BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780130|ref|YP_003064543.1| hypothetical protein
CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|317120757|gb|ADV02578.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 460

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 256 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 316 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 375

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 376 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 435

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 436 LQRLRTKSTIQDLLLNALKKETIHV 460


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547866|gb|ACT57668.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 434 LQRLRTKSTIQDLLLNALKKETIHV 458


>gi|317120700|gb|ADV02523.1| SNF2 Dead box helicase [Liberibacter phage SC1]
 gi|317120743|gb|ADV02565.1| SNF2 Dead box helicase [Liberibacter phage SC2]
 gi|317120804|gb|ADV02625.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039807|gb|ACT56603.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205


>gi|317120844|gb|ADV02665.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/205 (97%), Positives = 203/205 (99%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+CD+QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 LKLYRKFQRELFCDIQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|315122937|ref|YP_004063426.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496339|gb|ADR52938.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  330 bits (845), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 151/200 (75%), Positives = 179/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDESHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A  +P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGRSPVLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGTLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|315121969|ref|YP_004062458.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495371|gb|ADR51970.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  328 bits (840), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 151/200 (75%), Positives = 178/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDENHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A   P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGGCPLLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGPLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|212712312|ref|ZP_03320440.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
 gi|212685058|gb|EEB44586.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
          Length = 463

 Score =  273 bits (697), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 122/200 (61%), Positives = 163/200 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + ++E++ +L+ E +EA N+A+KTVKCLQ+A+GA+Y D+ K+W E+HD KI+ALE 
Sbjct: 264 KQYQEMEKEMFLELEHEGVEALNAAAKTVKCLQIASGAIYTDDSKNWVELHDTKIQALES 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II ++   PI+VAYH+  DL RL KAFP+GR LD DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 IISESGGMPILVAYHWKHDLERLLKAFPKGRNLDADPQTLRDWNAGKIPILFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG+ R VF+++LIA  T+DE+V+
Sbjct: 384 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGYNRPVFIHHLIAAGTMDEVVM 443

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +R  +K  IQDLLL A+K++
Sbjct: 444 ERRNSKREIQDLLLEAMKRK 463


>gi|238920126|ref|YP_002933641.1| hypothetical protein NT01EI_2232 [Edwardsiella ictaluri 93-146]
 gi|238869695|gb|ACR69406.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 433

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDTGSWSELHDAKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QDLLL+A+KK  I
Sbjct: 411 ERRNSKRTVQDLLLDAMKKRGI 432


>gi|323159216|gb|EFZ45206.1| DEAD box helicase [Escherichia coli E128010]
          Length = 435

 Score =  270 bits (691), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 233 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 292

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 293 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 352

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 353 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 412

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 413 ERRNSKRTVQDILLDAMKKRGI 434


>gi|218555139|ref|YP_002388052.1| hypothetical protein ECIAI1_2669 [Escherichia coli IAI1]
 gi|218361907|emb|CAQ99507.1| conserved hypothetical protein from bacteriophage origin
           [Escherichia coli IAI1]
          Length = 464

 Score =  270 bits (691), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|260845245|ref|YP_003223023.1| putative phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
 gi|257760392|dbj|BAI31889.1| predicted phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
          Length = 464

 Score =  270 bits (691), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|262043428|ref|ZP_06016553.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039254|gb|EEW40400.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 464

 Score =  270 bits (690), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAVDTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRDSKRTVQDILLDAMKKRGI 463


>gi|194429287|ref|ZP_03061814.1| dead box helicase [Escherichia coli B171]
 gi|194412695|gb|EDX28990.1| dead box helicase [Escherichia coli B171]
          Length = 464

 Score =  270 bits (690), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|191174014|ref|ZP_03035531.1| dead box helicase [Escherichia coli F11]
 gi|190905705|gb|EDV65327.1| dead box helicase [Escherichia coli F11]
 gi|324014343|gb|EGB83562.1| SNF2 domain protein [Escherichia coli MS 60-1]
          Length = 464

 Score =  270 bits (690), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|331654021|ref|ZP_08355022.1| putative protein p41 [Escherichia coli M718]
 gi|331048870|gb|EGI20946.1| putative protein p41 [Escherichia coli M718]
          Length = 465

 Score =  270 bits (690), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 263 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 322

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 323 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 382

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 383 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 442

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 443 ERRNSKRTVQDILLDAMKKRGI 464


>gi|188492213|ref|ZP_02999483.1| dead box helicase [Escherichia coli 53638]
 gi|188487412|gb|EDU62515.1| dead box helicase [Escherichia coli 53638]
 gi|332088071|gb|EGI93196.1| DEAD box helicase [Shigella boydii 5216-82]
          Length = 464

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE+IEA N+A+KT KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGESIEAPNAAAKTQKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|291283833|ref|YP_003500651.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763706|gb|ADD57667.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
          Length = 463

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GA+Y D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGALYTDDTGSWSELHDTKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|331648305|ref|ZP_08349394.1| putative protein p41 [Escherichia coli M605]
 gi|331042854|gb|EGI14995.1| putative protein p41 [Escherichia coli M605]
          Length = 464

 Score =  269 bits (688), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS  H
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASASH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LLNA+KK  I
Sbjct: 442 ERRNSKRTVQDILLNAMKKRGI 463


>gi|82777983|ref|YP_404332.1| hypothetical protein SDY_2798 [Shigella dysenteriae Sd197]
 gi|309784630|ref|ZP_07679265.1| DEAD box helicase [Shigella dysenteriae 1617]
 gi|81242131|gb|ABB62841.1| hypothetical bacteriophage protein [Shigella dysenteriae Sd197]
 gi|308927527|gb|EFP72999.1| DEAD box helicase [Shigella dysenteriae 1617]
          Length = 311

 Score =  268 bits (684), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 109 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 168

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 169 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 228

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 229 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 288

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           ++  +K T+QD+LL+A+KK  I
Sbjct: 289 EQRNSKRTVQDILLDAMKKRGI 310


>gi|323173123|gb|EFZ58754.1| DEAD box helicase [Escherichia coli LT-68]
          Length = 433

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGYILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 411 ERRNSKRTVQDILLDAMKKRGI 432


>gi|332160953|ref|YP_004297530.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665183|gb|ADZ41827.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 432

 Score =  267 bits (682), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 160/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 411 RRDSKREVQDILLEAMKKRGL 431


>gi|41179407|ref|NP_958716.1| Bbp47 [Bordetella phage BPP-1]
 gi|45569539|ref|NP_996608.1| DEAD box helicase [Bordetella phage BMP-1]
 gi|45580790|ref|NP_996656.1| DEAD box helicase [Bordetella phage BIP-1]
 gi|40950146|gb|AAR97712.1| Bbp47 [Bordetella phage BPP-1]
          Length = 464

 Score =  267 bits (682), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEV 61
           Y   +RE +  L+ G  IEAFN+ASKT+KCLQLANGA+Y D+    W +VHD K++ALE 
Sbjct: 263 YRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQALES 322

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A   P++VAYHF SDLARLQ+AFPQGR LD++P TI++WN GKIPLLFAHPAS GH
Sbjct: 323 IVAEAAGMPVLVAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASAGH 382

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+Y+++A +T+DELV+
Sbjct: 383 GLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVM 442

Query: 182 QRLRTKSTIQDLLLNALKK 200
            R  +K  +QDLLL A+K+
Sbjct: 443 ARRESKREVQDLLLEAMKR 461


>gi|170023443|ref|YP_001719948.1| hypothetical protein YPK_1197 [Yersinia pseudotuberculosis YPIII]
 gi|169749977|gb|ACA67495.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
          Length = 463

 Score =  266 bits (681), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 159/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +    IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 262 QYKEMEKEMFLQIGDHGIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 322 ITEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 382 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 441

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 442 RRDSKREVQDILLEAMKKRGL 462


>gi|204927042|ref|ZP_03218244.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323707|gb|EDZ08902.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 463

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+ P T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQGPQTLRDWNAGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++I  +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIITADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|295096884|emb|CBK85974.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 466

 Score =  266 bits (680), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E++ +L G+ IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 264 QHYREMEKEMFLELNGKGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL+KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 ILTEAAGAPVLVAYHWKHDLERLRKAFPKGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA  T+DE+V+
Sbjct: 384 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIATGTMDEMVM 443

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K  +QD+LL+A+KK  I
Sbjct: 444 ERRNSKRKVQDILLDAMKKRGI 465


>gi|330862108|emb|CBX72272.1| putative protein p41 [Yersinia enterocolitica W22703]
          Length = 432

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 159/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDL RL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLTRLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 411 RRDSKREVQDILLEAMKKRGL 431


>gi|9633588|ref|NP_051002.1| hypothetical protein APSE-1_41 [Acyrthosiphon pisum bacteriophage
           APSE-1]
 gi|9910955|sp|Q9T1Q7|VP41_BPAPS RecName: Full=Putative protein p41
 gi|6118036|gb|AAF03984.1|AF157835_41 P41 [Endosymbiont phage APSE-1]
          Length = 460

 Score =  264 bits (675), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 159/199 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I
Sbjct: 262 HYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHG
Sbjct: 322 VNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++
Sbjct: 382 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVME 441

Query: 183 RLRTKSTIQDLLLNALKKE 201
           R  +K  IQDLLL A+K++
Sbjct: 442 RRNSKRAIQDLLLEAMKRK 460


>gi|71900964|ref|ZP_00683077.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71729269|gb|EAO31387.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 160/201 (79%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|71276270|ref|ZP_00652548.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71162878|gb|EAO12602.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 160/202 (79%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71274496|ref|ZP_00650784.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71900325|ref|ZP_00682460.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71164228|gb|EAO13942.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71729900|gb|EAO31996.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 159/201 (79%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|170730331|ref|YP_001775764.1| hypothetical protein Xfasm12_1183 [Xylella fastidiosa M12]
 gi|167965124|gb|ACA12134.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 295

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKALEV 61
           Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL  
Sbjct: 82  YKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEALHD 141

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS GH
Sbjct: 142 IIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASAGH 201

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DELV+
Sbjct: 202 GLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDELVM 261

Query: 182 QRLRTKSTIQDLLLNALKK 200
            R  +K  +QDLLL A+K+
Sbjct: 262 ARRESKREVQDLLLEAVKR 280


>gi|71898924|ref|ZP_00681091.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731336|gb|EAO33400.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71901323|ref|ZP_00683419.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728907|gb|EAO31042.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71898992|ref|ZP_00681158.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731238|gb|EAO33303.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 158/201 (78%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPETIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|170729638|ref|YP_001775071.1| hypothetical protein Xfasm12_0427 [Xylella fastidiosa M12]
 gi|167964431|gb|ACA11441.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 472

 Score =  258 bits (658), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71275472|ref|ZP_00651758.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71163772|gb|EAO13488.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|212499736|ref|YP_002308544.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|238898727|ref|YP_002924408.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|75906050|gb|ABA29396.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|211731705|gb|ACJ10193.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|229466486|gb|ACQ68260.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 460

 Score =  257 bits (657), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 154/199 (77%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++EL+ +L    IEA N+A+KT+K LQ+A GA+Y D+  +W  +HD KI+ALE I
Sbjct: 262 HYQAMEKELFLELGDSAIEALNAAAKTIKTLQIAAGAIYSDDNHNWTAIHDAKIQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHG
Sbjct: 322 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++
Sbjct: 382 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVME 441

Query: 183 RLRTKSTIQDLLLNALKKE 201
           R  +K  IQDLLL A+K++
Sbjct: 442 RRNSKRAIQDLLLEAMKRK 460


>gi|71902063|ref|ZP_00684103.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728174|gb|EAO30365.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  257 bits (657), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71901494|ref|ZP_00683581.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728750|gb|EAO30894.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 464

 Score =  257 bits (656), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A++++
Sbjct: 437 VMARRESKREVQDLLLEAVRRK 458


>gi|273810423|ref|YP_003344894.1| helicase [Xylella phage Xfas53]
 gi|257097798|gb|ACV41104.1| helicase [Xylella phage Xfas53]
          Length = 472

 Score =  257 bits (656), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28199605|ref|NP_779919.1| hypothetical protein PD1730 [Xylella fastidiosa Temecula1]
 gi|182682346|ref|YP_001830506.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057720|gb|AAO29568.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632456|gb|ACB93232.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307578627|gb|ADN62596.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  257 bits (656), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 158/201 (78%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|28198299|ref|NP_778613.1| hypothetical protein PD0382 [Xylella fastidiosa Temecula1]
 gi|28199082|ref|NP_779396.1| hypothetical protein PD1194 [Xylella fastidiosa Temecula1]
 gi|182680936|ref|YP_001829096.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182681808|ref|YP_001829968.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28056369|gb|AAO28262.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|28057180|gb|AAO29045.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631046|gb|ACB91822.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182631918|gb|ACB92694.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307579404|gb|ADN63373.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  257 bits (656), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71899887|ref|ZP_00682035.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71730327|gb|EAO32410.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28199029|ref|NP_779343.1| hypothetical protein PD1137 [Xylella fastidiosa Temecula1]
 gi|182681751|ref|YP_001829911.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057127|gb|AAO28992.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631861|gb|ACB92637.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307580180|gb|ADN64149.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|15837282|ref|NP_297970.1| hypothetical protein XF0680 [Xylella fastidiosa 9a5c]
 gi|9105562|gb|AAF83490.1|AE003912_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ RLQ+AFP+GR LD+ P TI++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVTRLQRAFPKGRVLDQHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ++ERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIVERIGPTRQAQAGHDRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRS 458


>gi|48697218|ref|YP_024948.1| putative helicase protein [Burkholderia phage BcepC6B]
 gi|47779024|gb|AAT38387.1| gp28 [Burkholderia phage BcepC6B]
          Length = 459

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 156/202 (77%), Gaps = 5/202 (2%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKIKA 58
           Y   +R+++ ++    IEA N+ASKT+KCLQLANGAVY  E+       W EVHD K++A
Sbjct: 254 YRDMERQMFMEIDDSPIEAMNAASKTMKCLQLANGAVYKQEDDGSDTAPWHEVHDLKLQA 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE I+E+A   P++VAYHF SDLARLQ+AFP+GR LD++P TI++WN GKIP++FAHPAS
Sbjct: 314 LEEIVEEAAGMPVLVAYHFKSDLARLQRAFPRGRQLDQNPQTIRDWNAGKIPVMFAHPAS 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGNIL  F  WW+LEE+ Q++ERIG  RQ QAG +R VF+Y +IA++TIDE
Sbjct: 374 AGHGLNLQDGGNILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTIDE 433

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            V++R  TK  +QD+LL+A+K+
Sbjct: 434 DVVERRETKRAVQDILLDAMKR 455


>gi|15839118|ref|NP_299806.1| hypothetical protein XF2528 [Xylella fastidiosa 9a5c]
 gi|9107736|gb|AAF85326.1|AE004060_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 155/201 (77%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E+   L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKTMEQEMLIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LF HPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFVHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  250 bits (638), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 152/186 (81%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH+
Sbjct: 347 EGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHW 406

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS 
Sbjct: 407 KHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFSH 466

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+QD+LL+A
Sbjct: 467 WWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDILLDA 526

Query: 198 LKKETI 203
           +KK  I
Sbjct: 527 MKKRGI 532


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 152/186 (81%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH+
Sbjct: 263 EGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHW 322

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS 
Sbjct: 323 KHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFSH 382

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+Q++LL+A
Sbjct: 383 WWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQNILLDA 442

Query: 198 LKKETI 203
           +KK  I
Sbjct: 443 MKKRGI 448


>gi|211731857|gb|ACJ10155.1| DEAD box helicase [Bacteriophage APSE-3]
          Length = 440

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 144/179 (80%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I
Sbjct: 262 HYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHG
Sbjct: 322 VNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 382 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|211731851|gb|ACJ10150.1| DEAD box helicase [Bacteriophage APSE-4]
          Length = 442

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 143/181 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I
Sbjct: 262 HYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGHG
Sbjct: 322 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++
Sbjct: 382 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVME 441

Query: 183 R 183
           R
Sbjct: 442 R 442


>gi|159146252|gb|ABW90589.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146254|gb|ABW90590.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146256|gb|ABW90591.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 143/178 (80%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I
Sbjct: 118 HYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESI 177

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHG
Sbjct: 178 VNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHG 237

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 238 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|159146264|gb|ABW90595.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 140/178 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I
Sbjct: 118 HYHAMEKELFLELSDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESI 177

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHG
Sbjct: 178 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHG 237

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 238 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|159146260|gb|ABW90593.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  238 bits (606), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 141/179 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ LE 
Sbjct: 117 EHYQAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQVLES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 177 IVNEAGGMPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|211731841|gb|ACJ10144.1| DEAD box helicase [Bacteriophage APSE-5]
          Length = 440

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 140/179 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I
Sbjct: 262 HYQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHG
Sbjct: 322 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 382 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|159146258|gb|ABW90592.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 140/178 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I
Sbjct: 118 HYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALESI 177

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGHG
Sbjct: 178 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGHG 237

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 238 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|159146262|gb|ABW90594.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 139/178 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I
Sbjct: 118 HYQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESI 177

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHG
Sbjct: 178 VNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHG 237

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 238 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|273810587|ref|YP_003344968.1| gp33 [Sodalis phage SO-1]
 gi|258619872|gb|ACV84125.1| gp33 [Sodalis phage SO-1]
          Length = 474

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 138/206 (66%), Gaps = 8/206 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFESELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---CTIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  L K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVALGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNFEHFSQIVERIGPVRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+DELV +R  +K  IQD L+  +K
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMK 468


>gi|225220074|ref|YP_002720041.1| helicase [Enterobacteria phage SSL-2009a]
 gi|224986015|gb|ACN74579.1| helicase [Enterobacteria phage SSL-2009a]
          Length = 474

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/206 (49%), Positives = 138/206 (66%), Gaps = 8/206 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFEAELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---CTIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  + K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVAMGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNYEHFAQIVERIGPIRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+DELV +R  +K  IQD L+  +K
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMK 468


>gi|318064550|gb|ADV36504.1| helicase [Edwardsiella phage eiMSLS]
          Length = 449

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y      +  K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|318064334|gb|ADV36398.1| helicase [Edwardsiella phage eiAU]
          Length = 449

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y      +  K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|318064442|gb|ADV36452.1| helicase [Edwardsiella phage eiDWF]
          Length = 449

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y      +  K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 XHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|309702946|emb|CBJ02277.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 134

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 112/133 (84%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           ++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GGN
Sbjct: 1   MLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGN 60

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V++R  +K T+
Sbjct: 61  ILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMERRNSKRTV 120

Query: 191 QDLLLNALKKETI 203
           QD+LL+A+KK  I
Sbjct: 121 QDILLDAMKKRGI 133


>gi|160898846|ref|YP_001564428.1| helicase-like protein [Delftia acidovorans SPH-1]
 gi|160364430|gb|ABX36043.1| helicase-like protein [Delftia acidovorans SPH-1]
          Length = 477

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 138/200 (69%), Gaps = 2/200 (1%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY +  REL  ++ G+ IEAF++ +K+ K LQ+A+GA Y D++  W  VHDEKI+AL+ 
Sbjct: 275 RQYDEMARELATEIDGQVIEAFSAGTKSQKLLQIASGAAYTDDQGAWALVHDEKIEALKS 334

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E+A   P++V YHF SDLAR++KAFP+ RTLD D    +++  G++ +L  HPAS GH
Sbjct: 335 VVEEALGMPLLVFYHFKSDLARIRKAFPKARTLD-DKGAKEDFEAGRLQMLVVHPASAGH 393

Query: 122 GLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           G++ LQ+G    VFFS  W  E   Q IERIG TRQ Q+G+ R V V+ L+A++T++E  
Sbjct: 394 GVDGLQHGTCQCVFFSTNWSAENDAQAIERIGPTRQMQSGYDRPVTVHRLVARDTVEESA 453

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           + RLR++ ++ + L   LKK
Sbjct: 454 MYRLRSRVSVDEALRQGLKK 473


>gi|62327356|ref|YP_224069.1| hypothetical protein BPKS7gp47 [Salmonella phage SS3e]
 gi|57472390|gb|AAW51252.1| hypothetical protein [Salmonella phage SS3e]
          Length = 474

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 137/205 (66%), Gaps = 8/205 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+ A
Sbjct: 266 YIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKEWEKVHDTKLDA 325

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEWNEGKIPLLFAH 115
           LE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L  H
Sbjct: 326 LESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFSKGAKGNKQMESWNRGEIEILCVH 385

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A++T
Sbjct: 386 PASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAKDT 445

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE+V  R   K ++Q+ LLN +K+
Sbjct: 446 LDEVVAARTDEKKSVQEELLNYMKR 470


>gi|282535269|gb|ADA82475.1| putative helicase [Escherichia phage K1ind3]
 gi|282547318|gb|ADA82375.1| putative helicase [Escherichia phage K1ind1]
 gi|282547370|gb|ADA82426.1| putative helicase [Escherichia phage K1ind2]
          Length = 474

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 137/205 (66%), Gaps = 8/205 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+ A
Sbjct: 266 YIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKLDA 325

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEWNEGKIPLLFAH 115
           LE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L  H
Sbjct: 326 LESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILCVH 385

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A++T
Sbjct: 386 PASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAKDT 445

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE+V  R   K ++Q+ LLN +K+
Sbjct: 446 LDEVVAARTDEKKSVQEELLNYMKR 470


>gi|282534217|gb|ADA82325.1| putative helicase [Escherichia phage K1H]
          Length = 477

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 137/205 (66%), Gaps = 8/205 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+ A
Sbjct: 269 YIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKLDA 328

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEWNEGKIPLLFAH 115
           LE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L  H
Sbjct: 329 LESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILCVH 388

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A++T
Sbjct: 389 PASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAKDT 448

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE+V  R   K ++Q+ LLN +K+
Sbjct: 449 LDEVVAARTDEKKSVQEELLNYMKR 473


>gi|282533166|gb|ADA82275.1| putative helicase [Escherichia phage K1G]
          Length = 474

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 137/205 (66%), Gaps = 8/205 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+ A
Sbjct: 266 YIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDMKLDA 325

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEWNEGKIPLLFAH 115
           LE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L  H
Sbjct: 326 LESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILCVH 385

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A++T
Sbjct: 386 PASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAKDT 445

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE+V  R   K ++Q+ LLN +K+
Sbjct: 446 LDEVVAARTDEKKSVQEELLNYMKR 470


>gi|71276170|ref|ZP_00652450.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71898329|ref|ZP_00680502.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|170730598|ref|YP_001776031.1| hypothetical protein Xfasm12_1485 [Xylella fastidiosa M12]
 gi|71163088|gb|EAO12810.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71731852|gb|EAO33910.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|167965391|gb|ACA12401.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 470

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 130/197 (65%), Gaps = 13/197 (6%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ SKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGTEVEAFNATSKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT----------RQRQAGFKRAVFVYY 169
           GHGLNLQ GGNIL FF  WW    +  ++    V           R+R A   R V  Y 
Sbjct: 377 GHGLNLQDGGNILAFFGHWWAQVRNGVLMRTCTVCGGSGTVPISDRKRAAALGRDVSTYC 436

Query: 170 LIAQNTIDELVLQRLRT 186
           +  +  + E +L++LR 
Sbjct: 437 MRWRG-LYEWLLEKLRA 452


>gi|134288567|ref|YP_001110806.1| putative helicase [Salmonella phage SETP3]
 gi|125631932|gb|ABN47335.1| putative helicase [Salmonella phage SETP3]
          Length = 821

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 137/205 (66%), Gaps = 8/205 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+ A
Sbjct: 613 YIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKLDA 672

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEWNEGKIPLLFAH 115
           LE I+E+   AP++VAY F  +L R+ + FPQ +   K       ++ WN G+I +L  H
Sbjct: 673 LESIVEELQGAPLLVAYQFKHELERILRRFPQAQAFAKGAKGNKQMESWNRGEIEILCVH 732

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A++T
Sbjct: 733 PASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAKDT 792

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE+V  R   K ++Q+ LLN +K+
Sbjct: 793 LDEVVAARTDEKKSVQEELLNYMKR 817


>gi|15838886|ref|NP_299574.1| hypothetical protein XF2295 [Xylella fastidiosa 9a5c]
 gi|9107459|gb|AAF85094.1|AE004041_6 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 470

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 120/179 (67%), Gaps = 12/179 (6%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT----------RQRQAGFKRAVFVY 168
           GHGLNLQ GGNIL FF  WW    +  ++    V           R+R A   R V  Y
Sbjct: 377 GHGLNLQDGGNILAFFGHWWAQVRNGVLMRTCTVCGGSGTVPISERKRAAALGRDVSTY 435


>gi|331007741|ref|ZP_08330867.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
 gi|330418449|gb|EGG92989.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
          Length = 479

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 125/184 (67%), Gaps = 5/184 (2%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           E IE  N+A+ + K LQ +NGA+Y +++ HW+ VHD K+ ALE II++A   P++VAY++
Sbjct: 277 ETIEVLNAAALSNKLLQFSNGAIYTNDQGHWEAVHDLKLSALEEIIQEAAGQPVLVAYNY 336

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            SDLAR+++ FPQ   +     +I  WN GKI LL AHPAS GHGLNLQ+GGN +V+F L
Sbjct: 337 KSDLARIKEHFPQAECITDSEDSIDRWNAGKISLLLAHPASAGHGLNLQHGGNTIVWFGL 396

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W LE +QQ   R+     RQ G  + V +++L+   +IDE V++ L++K T Q  LLNA
Sbjct: 397 NWSLELYQQFNARL----HRQ-GQTKPVIIHHLVVNGSIDETVIEALKSKKTTQKALLNA 451

Query: 198 LKKE 201
           LKK+
Sbjct: 452 LKKD 455


>gi|300933380|ref|ZP_07148636.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 454

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 126/200 (63%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DEE +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEEGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ +  PQ R L      I+ WNEG IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRQRITERLPQARELTTS-ADIEAWNEGGIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+     RQ G  + V + +L + +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL----YRQ-GQDQPVTITHLASADTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L +K+ IQ  L++A+  E
Sbjct: 427 AALESKNDIQSALIDAVTSE 446


>gi|325687762|gb|EGD29783.1| SNF2 domain protein [Streptococcus sanguinis SK72]
          Length = 450

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 131/198 (66%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG +Y DE +    +HD+K+ ALE ++
Sbjct: 252 YKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANGMIY-DENRDTVLLHDQKLVALEEMV 310

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E  N  P++VAY F  DL R+++ FP+ R +  +   I+EWN+GKIPL   HPAS GHGL
Sbjct: 311 ESMNGRPLLVAYWFQHDLKRIKERFPEARVIQSNQ-DIEEWNKGKIPLGLIHPASSGHGL 369

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ + +F L W LE +QQ+  R+     RQ G K  V V+++I +NTIDE V++R
Sbjct: 370 NLQAGGHTICWFGLTWSLELYQQLNARL----WRQ-GQKETVVVHHIITKNTIDEQVMKR 424

Query: 184 LRTKSTIQDLLLNALKKE 201
           L+ K   Q  L++A+K E
Sbjct: 425 LKEKDISQQSLIDAVKYE 442


>gi|257088837|ref|ZP_05583198.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256997649|gb|EEU84169.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 430

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 6/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 227 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 286 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 345

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q    + V +++L+ + TIDE V+
Sbjct: 346 GLNLQKGGHIIVWFGLTWSLEFYQQANARL--DRQGQT---QPVIIHHLVTKGTIDEQVI 400

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L+ K   Q  L+ A+K
Sbjct: 401 KALQAKEQGQSALMAAVK 418


>gi|281416462|ref|YP_003347382.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|270209638|gb|ACZ64177.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|315160593|gb|EFU04610.1| protein, SNF2 family [Enterococcus faecalis TX0645]
 gi|315579439|gb|EFU91630.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 459

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 6/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q    + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQQANARL--DRQGQT---QPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L+ K   Q  L+ A+K
Sbjct: 430 KALQAKEQGQSALMAAVK 447


>gi|29374969|ref|NP_814122.1| SNF2 domain-containing protein [Enterococcus faecalis V583]
 gi|29342427|gb|AAO80193.1| SNF2 domain protein [Enterococcus faecalis V583]
          Length = 457

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 6/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 254 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKI LL AHP S GH
Sbjct: 313 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKISLLLAHPQSAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q    + V +++L+ + TIDE V+
Sbjct: 373 GLNLQKGGHIIVWFGLTWSLEFYQQANARL--DRQGQT---QPVIIHHLVTKGTIDEQVI 427

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L+ K   Q  L+ A+K
Sbjct: 428 KALQAKEQGQSALMAAVK 445


>gi|227520161|ref|ZP_03950210.1| helicase [Enterococcus faecalis TX0104]
 gi|227072406|gb|EEI10369.1| helicase [Enterococcus faecalis TX0104]
 gi|315574062|gb|EFU86253.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315582007|gb|EFU94198.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 455

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 6/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+  ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEETDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+     RQ G  + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQQANARL----DRQ-GQTQPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L+ K   Q  L+ A+K
Sbjct: 430 KALQAKEQGQSALMAAVK 447


>gi|306826832|ref|ZP_07460132.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
 gi|304430850|gb|EFM33859.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 440

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|139473885|ref|YP_001128601.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
 gi|134272132|emb|CAM30377.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 440

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|260579063|ref|ZP_05846962.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602814|gb|EEW16092.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
          Length = 453

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 122/197 (61%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL R+ + FPQ R L      I  WN  +IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDLQRITERFPQARELTTS-TDIAAWNAREIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+     RQ G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL----YRQ-GQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|28895337|ref|NP_801687.1| hypothetical protein SPs0425 [Streptococcus pyogenes SSI-1]
 gi|28810583|dbj|BAC63520.1| hypothetical protein (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 442

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 249 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 308 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 363

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 364 HGLNLQKGGHIIVWFGLTWSLEYYQQANARL--DRQGQT---EPVIVHHIVAENTVDEKV 418

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 419 LRILQGKEKNQNALLEAVKAQ 439


>gi|21910976|ref|NP_665244.1| putative helicase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876470|ref|NP_795678.1| putative helicase [Streptococcus pyogenes phage 315.6]
 gi|50913383|ref|YP_059355.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|21905184|gb|AAM80047.1| putative helicase - phage-associated [Streptococcus pyogenes
           MGAS315]
 gi|50902457|gb|AAT86172.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 440

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|225871338|ref|YP_002747285.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
 gi|225700742|emb|CAW95382.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
          Length = 440

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIY-DDDKTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|297242712|ref|ZP_06926650.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
 gi|296888923|gb|EFH27657.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
          Length = 479

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 128/198 (64%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++   L+G+ I+A N+A  + K LQ+A GAVY +E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKQDMVVSLEGKEIDAINAAYLSNKLLQMAGGAVY-NEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F   R + K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRF-NVREI-KTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+   RQ Q G    V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARL--NRQGQTG---TVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K+ +QD L++++K
Sbjct: 426 RALSMKAKVQDALIDSVK 443


>gi|209559301|ref|YP_002285773.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
 gi|209540502|gb|ACI61078.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
          Length = 440

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 127/201 (63%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNDLLEAVKAQ 437


>gi|71911260|ref|YP_282810.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94989079|ref|YP_597180.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94992970|ref|YP_601069.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
 gi|71854042|gb|AAZ52065.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542587|gb|ABF32636.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546478|gb|ABF36525.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 440

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIY-DDDKSTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  D  RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDFERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|226949727|ref|YP_002804818.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843727|gb|ACO86393.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 456

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 133/203 (65%), Gaps = 11/203 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + +Y + +++L  +L  ++I A N+A  T K LQ++NGA+Y  E+K   E+HDEK+KAL 
Sbjct: 252 INKYKQLEKDLVLELGEDDITAANAAVLTNKLLQMSNGAIY-SEDKQVIEIHDEKLKALL 310

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHP 116
            IIE AN  P+++ Y F  D  R+   F + + L+     D   I++WN G+IP+L  HP
Sbjct: 311 DIIESANGKPVLIFYSFKHDFDRIVNFF-KSKKLNAIGLGDSKDIKKWNNGEIPILLVHP 369

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQYGGNI+V+F L W LE +QQ   R+     RQ G K +V +++L++++T+
Sbjct: 370 ASAGHGLNLQYGGNIIVWFGLTWSLELYQQANARL----HRQ-GQKESVIIHHLVSKDTV 424

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           DE V++ L +K   Q++LL A+K
Sbjct: 425 DEDVIKTLGSKEVNQNVLLEAVK 447


>gi|313618477|gb|EFR90480.1| putative protein p41 [Listeria innocua FSL S4-378]
          Length = 450

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 124/198 (62%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+ ++  +L  + I+A N+A  + K LQ+ANGAVY D E     +HD+K+ ALE 
Sbjct: 254 KVYSDFKEDMVANLGDDEIDAVNAAVLSGKLLQMANGAVY-DSENKAHVIHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++  FP  +   +    I++WN+GKIP+   HPAS GH
Sbjct: 313 LIEGANGKPVLVAYWFKHDLERIKNRFPVRKI--QSSKDIEDWNDGKIPIAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+   RQ Q   +  V V+++I +NTIDE VL
Sbjct: 371 GLNLQSGGSTLIWFGLTWSLELYQQTNARL--YRQGQ---RDTVIVHHIITKNTIDEDVL 425

Query: 182 QRLRTKSTIQDLLLNALK 199
             L  K   QD L++A+K
Sbjct: 426 LALTKKEKTQDALIDAVK 443


>gi|150391738|ref|YP_001321787.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
 gi|149951600|gb|ABR50128.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
          Length = 414

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 123/196 (62%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y  F+ ++   L  E I+A N+A  + K LQ+ANGAVY DE+     +HD K+ ALE +I
Sbjct: 220 YSGFRDDMVASLGAEEIDAVNAAVLSGKLLQMANGAVY-DEKNKAHFIHDRKLDALEDLI 278

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY F  DL R+QK FP  R L K    I+EWNEG+IP+   HPAS GHGL
Sbjct: 279 EGANGKPVLIAYWFKHDLDRIQKRFP-ARQL-KSSRDIEEWNEGEIPVAVIHPASAGHGL 336

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ LV+F L W LE +QQ   R+     RQ G K  V ++++I ++TIDE V+  
Sbjct: 337 NLQSGGSTLVWFGLTWSLELYQQTNARL----YRQ-GQKDTVVIHHIITKDTIDEDVMTA 391

Query: 184 LRTKSTIQDLLLNALK 199
           L  K   Q  L++A+K
Sbjct: 392 LTKKEKTQASLIDAVK 407


>gi|153938777|ref|YP_001391667.1| SNF2 domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152934673|gb|ABS40171.1| SNF2 domain protein [Clostridium botulinum F str. Langeland]
 gi|295319699|gb|ADG00077.1| SNF2 domain protein [Clostridium botulinum F str. 230613]
          Length = 454

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 134/203 (66%), Gaps = 11/203 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M +Y + +++L  +L  ++I A N+A  T K LQ++NGA+Y  E+K   E+H+EK+KAL 
Sbjct: 252 MDKYKQLEKDLVIELGEDDITATNAAVLTNKLLQMSNGAIY-SEDKSVLEIHEEKLKALL 310

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----KDPCTIQEWNEGKIPLLFAHP 116
            IIE AN  P+++ Y F  D  R+   F + + L+    +D   I++WN G+IP+L  HP
Sbjct: 311 DIIEAANGKPVLIFYSFKHDFDRIVN-FLKTKKLNAIGLEDSKDIKKWNNGEIPILLVHP 369

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQYGGNI+V+F L W LE +QQ   R+     RQ G K +V +++L++++T+
Sbjct: 370 ASAGHGLNLQYGGNIIVWFGLTWSLELYQQANARL----HRQ-GQKESVIIHHLVSKDTV 424

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           DE V++ L +K   Q++LL A+K
Sbjct: 425 DEDVIKALDSKEVNQNVLLEAVK 447


>gi|298253802|ref|ZP_06977391.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
 gi|297532138|gb|EFH71111.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
          Length = 479

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 126/198 (63%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + ++   L+G+ I+A N+AS + K LQ+A GAVY +E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKADMVVSLEGKEIDAINAASLSNKLLQMAGGAVY-NEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F   R + K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRF-NVREI-KTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+   RQ Q      V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARL--NRQGQTS---TVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K+ +QD L+ ++K
Sbjct: 426 RALSMKAKVQDALIESVK 443


>gi|157311154|ref|YP_001469199.1| helicase [Streptococcus phage P9]
 gi|119104303|gb|ABL61048.1| helicase [Streptococcus phage P9]
          Length = 440

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D +K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLVNKLLQMANGAIY-DADKTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN G+IP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGRIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q      V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD--RQGQT---EPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|220930418|ref|YP_002507327.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000746|gb|ACL77347.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 457

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 128/200 (64%), Gaps = 9/200 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y K +R+L   L   +I A  +A  + K LQ ANGAVY +E +  +++H+ K+ ALE I
Sbjct: 255 KYRKLERDLLLPLVDGDIVANTAAVLSNKLLQFANGAVY-NENQEIQKIHNAKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---CTIQEWNEGKIPLLFAHPASC 119
           +E AN  P+++ Y +  DL+R+Q+ F Q RTL K P     I +WN GKI LL  HP S 
Sbjct: 314 LEAANGHPVLLFYSYKHDLSRIQERFTQTRTLRKGPEGSKDIADWNSGKIQLLAVHPGSA 373

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+I+V+F L W LE +QQ   R+     RQ G K++V +++L+A  TIDE 
Sbjct: 374 GHGLNLQDGGSIIVWFGLTWSLELYQQANARL----HRQ-GQKQSVIIHHLVADGTIDED 428

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           V++ L  K+T QD L+ A+K
Sbjct: 429 VMRALEDKATGQDALMEAVK 448


>gi|300856809|ref|YP_003781793.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300436924|gb|ADK16691.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 443

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 127/201 (63%), Gaps = 11/201 (5%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + +++L  +L  E+I A N+A  T K LQ++NGA+Y  E+K   ++HDEK+KAL  I
Sbjct: 239 KYKELEKDLVLELGKEDITAANAAVLTNKLLQMSNGAIY-SEDKKVVKIHDEKLKALFEI 297

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----KDPCTIQEWNEGKIPLLFAHPAS 118
           IE AN  P++V Y F  D  R+   F   + L     KD   I+ WN+G+IP+L  HPAS
Sbjct: 298 IEAANGKPVLVFYSFKHDFDRIIN-FLSSKKLKAVGLKDSADIKRWNKGEIPILLIHPAS 356

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQYGGNI+V+F L W LE +QQ   R+     RQ G K  V + ++IA+ T+DE
Sbjct: 357 AGHGLNLQYGGNIIVWFGLTWSLELYQQANARL----HRQ-GQKETVVINHIIAKGTVDE 411

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V++ L  K   Q++LL A+K
Sbjct: 412 DVMKSLGNKKVNQNILLEAVK 432


>gi|50843064|ref|YP_056291.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|50840666|gb|AAT83333.1| conserved phage-associated protein [Propionibacterium acnes
           KPA171202]
 gi|315106939|gb|EFT78915.1| protein, SNF2 family [Propionibacterium acnes HL030PA1]
          Length = 458

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+Y DE     EVH  K+ ALE II
Sbjct: 256 YEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAIY-DEHGDTVEVHGAKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN   ++VAY +  D  R+Q+ FPQ R L K    I+ WN G IPL   HPAS GHGL
Sbjct: 315 EAANGQTVLVAYWYRHDRERIQRRFPQAREL-KTSADIEAWNRGDIPLGLIHPASAGHGL 373

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG++LV+FSL W LE +QQ   R+   RQ QA     V + +L A  T+D+ VL+ 
Sbjct: 374 NLQSGGHLLVWFSLTWSLELYQQTNARL--YRQGQA---EPVTITHLTATGTLDQAVLKA 428

Query: 184 LRTKSTIQDLLLNALKKE 201
           L  K   Q  L++A+  E
Sbjct: 429 LEAKDMTQAALIDAVATE 446


>gi|167039884|ref|YP_001662869.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300915304|ref|ZP_07132618.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307724792|ref|YP_003904543.1| SNF2-like protein [Thermoanaerobacter sp. X513]
 gi|166854124|gb|ABY92533.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300888580|gb|EFK83728.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307581853|gb|ADN55252.1| SNF2-related protein [Thermoanaerobacter sp. X513]
          Length = 449

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 8/199 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK     +R+L  +++GE + A N+A+ + K LQ+ANGAVY D+      +HD K+ ALE
Sbjct: 253 MKTLDTMKRDLITNVKGEEVTAANAAALSGKLLQMANGAVY-DDHGTVLYIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +IE AN  P+++AY F  DL+R+QK F        D  +I+ WN+G+IP+   HPAS G
Sbjct: 312 DLIEAANGKPVLIAYWFKHDLSRIQKRFEVEVLSTSD--SIKRWNDGEIPIAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ LV+F L W LE +QQ   R+     RQ G K  V +++LI++ TIDE V
Sbjct: 370 HGLNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQ-GQKETVVIHHLISKGTIDERV 424

Query: 181 LQRLRTKSTIQDLLLNALK 199
           ++ L  K+  Q  L++A+K
Sbjct: 425 MKALNDKNNTQSALIDAVK 443


>gi|313813466|gb|EFS51180.1| protein, SNF2 family [Propionibacterium acnes HL025PA1]
          Length = 458

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+Y DE     EVH  K+ ALE II
Sbjct: 256 YEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAIY-DEHGDTVEVHGAKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN   ++VAY +  D  R+Q+ FPQ R L K    I+ WN G IPL   HPAS GHGL
Sbjct: 315 EAANGQTVLVAYWYRHDRERIQRRFPQAREL-KTSADIEAWNRGDIPLGLIHPASAGHGL 373

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG++LV+FSL W LE +QQ   R+   RQ QA     V + +L A  T+D+ VL+ 
Sbjct: 374 NLQSGGHLLVWFSLTWSLELYQQTNARL--YRQGQA---EPVTITHLTATGTLDQAVLKA 428

Query: 184 LRTKSTIQDLLLNALKKE 201
           L  K   Q  L++A+  E
Sbjct: 429 LEAKDMTQAALIDAVATE 446


>gi|167630964|ref|YP_001681463.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
 gi|167593704|gb|ABZ85452.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
          Length = 452

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 124/198 (62%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +REL   L+G+ I+A ++AS + K LQ+ANGAVY D+      +H  K+ ALE 
Sbjct: 254 KVYETMKRELVLSLEGQEIDAGSAASLSNKLLQMANGAVYADDGSV-VNIHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+E AN  P+++AY +  DL R+ K FP  R    D  +I+ WN+G+IP+   HPAS GH
Sbjct: 313 ILEAANGKPVLIAYWYKHDLNRILKRFPAERLDSVD--SIRRWNDGEIPVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+     RQ G K  V ++++I + TIDE V+
Sbjct: 371 GLNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQ-GQKETVVIHHIITKGTIDEQVM 425

Query: 182 QRLRTKSTIQDLLLNALK 199
           + LR K   Q  L++A+K
Sbjct: 426 KALRLKDKTQTALIDAVK 443


>gi|327461127|gb|EGF07460.1| SNF2 domain protein [Streptococcus sanguinis SK1057]
          Length = 450

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 130/198 (65%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG VY D+ +    +HD+K+ ALE ++
Sbjct: 252 YKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANGMVY-DDNRKTVLLHDQKLVALEEMV 310

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E  N  P+++AY F  DL R+++ +P+ R +  +   I++WN+GKI L   HPAS GHGL
Sbjct: 311 ESMNGRPLLIAYCFQHDLRRIKERYPEARVIQSNQ-DIEDWNKGKIVLGLIHPASSGHGL 369

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ + +F L W LE +QQ+  R+     RQ G K  V V+++I +N+IDE V++R
Sbjct: 370 NLQAGGHTICWFGLTWSLELYQQLNARL----WRQ-GQKETVVVHHIITKNSIDEQVMKR 424

Query: 184 LRTKSTIQDLLLNALKKE 201
           L+ K   Q  L++A+K E
Sbjct: 425 LKEKDISQQSLIDAVKYE 442


>gi|304389862|ref|ZP_07371821.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327038|gb|EFL94277.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 458

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 123/204 (60%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L   L  E I+A N+A+ + K LQLA+GA+Y  +   W  VHD K+ ALE 
Sbjct: 254 KVYEQLKADLVLQLGDETIDAANAAALSGKLLQLASGAIYTGD-GDWASVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E  N  P++VAY F  D  R+   FPQ R L K    I+ WN+G+I     HPAS GH
Sbjct: 313 LVEATNGNPLLVAYWFTHDRERITARFPQAREL-KTSADIEAWNKGEITFGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+   RQ Q+     V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL--YRQGQS---EPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L  K   Q  L+NA+ +E IH 
Sbjct: 427 RALDVKDATQAALINAVAQE-IHT 449


>gi|300933478|ref|ZP_07148734.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 453

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 120/197 (60%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+   FP  R L      I +WN  ++PL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRERITTRFPGARELTTS-ADITQWNAREVPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+     RQ G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL----YRQ-GQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|331085752|ref|ZP_08334835.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406675|gb|EGG86180.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 448

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 123/198 (62%), Gaps = 7/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+R++   +  E ++A N+A+ + K LQ+ANGAVY  E+K    +HD K+ ALE 
Sbjct: 252 KLYQSFERDMVLSIGEEELDAANAAALSNKLLQMANGAVY-GEDKKVISIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  PI+VAY +  DL R+QK  P+ R +D     I +WN G+I +   HPAS GH
Sbjct: 311 LVEAANGKPILVAYWYKHDLMRIQKRLPEARVIDTSK-DITDWNHGEIAIGLIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  +V+F L W LE +QQM  R+     RQ G K  V +++LI + T DE V+
Sbjct: 370 GLNLQEGGCTIVWFGLTWSLELYQQMNARL----WRQ-GQKHTVVIHHLITKGTHDEDVM 424

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K T Q  L++A++
Sbjct: 425 KALEKKETGQSALIHAVR 442


>gi|284048430|ref|YP_003398769.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
 gi|283952651|gb|ADB47454.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
          Length = 449

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y  F++ L  +L G  + A N+AS T+K  Q+ANGA+Y D+ K    +HD K+ ALE 
Sbjct: 252 KRYQDFKKSLVMELPGGEVTAANAASLTLKLTQMANGAIYTDDGKTI-HLHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ +   + R L K      +WN GKIP+   HPAS GH
Sbjct: 311 LVESANGRPVLVAYWFRHDKERICQRM-EAREL-KSSQDFADWNAGKIPVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL++F L W LE +QQ + R+     RQ    R V V +++ ++TIDE +L
Sbjct: 369 GLNLQQGGSILIWFGLTWSLELYQQTVARL----WRQGQESRTVIVQHIVTKSTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K + Q  L+ A+K +
Sbjct: 425 KALEKKDSSQAALIEAVKAD 444


>gi|325690428|gb|EGD32431.1| SNF2 domain protein [Streptococcus sanguinis SK115]
          Length = 450

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +F+ E+   ++G+ ++A NSAS + K LQ++NG VY DE +    +HD+K+ ALE ++
Sbjct: 252 YKEFKTEMMVSIKGQVLDAVNSASLSNKLLQMSNGMVY-DENRKAVLLHDQKLVALEEMV 310

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E  N  P++VAY F  DL R+++ F + R +  +   I++WN+GKI L   HPAS GHGL
Sbjct: 311 ESMNNRPLLVAYWFQHDLKRIKERFSEARVIQSNQ-DIEDWNKGKIVLGLVHPASSGHGL 369

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ + +F L W LE +QQ+  R+     RQ G K  V V+++I ++T+DE V++R
Sbjct: 370 NLQAGGHTICWFGLTWSLELYQQLNARL----WRQ-GQKETVVVHHIITKSTMDEQVMKR 424

Query: 184 LRTKSTIQDLLLNALKKE 201
           L+ K   Q  L++A+K E
Sbjct: 425 LKEKDISQQSLIDAVKYE 442


>gi|325478705|gb|EGC81816.1| type III restriction enzyme, res subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 448

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 129/196 (65%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+VY DE+K+   +HD K+ ALE +I
Sbjct: 256 YETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSVY-DEDKNMIHIHDRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY + SDL R++  F   R L K     +EWN+GKIP+   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYKSDLKRIKDRFDL-REL-KTSEDFKEWNQGKIPVAIIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++FSL W LE ++Q   R+     RQ G K  V +++++A+ TIDE V++ 
Sbjct: 373 NLQAGGSTLIWFSLTWSLELYEQTNARL----YRQ-GQKETVVIHHILAKGTIDEDVMKA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L  K+  Q  L++A+K
Sbjct: 428 LENKNKTQAALIDAVK 443


>gi|197303505|ref|ZP_03168544.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
 gi|197297503|gb|EDY32064.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 123/205 (60%), Gaps = 10/205 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   + E++  L+   I A N+A+ + K LQ+ANGAVY D+     ++HD+K+ ALE +I
Sbjct: 133 YDDMEAEMFLPLRTGEITAANAAALSGKLLQMANGAVYSDDGDEI-QIHDQKLDALEDLI 191

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASC 119
           E AN  P++VAY F  DL R+++   + +     LD +  +I++WN G++P+   HPAS 
Sbjct: 192 EAANGKPVMVAYWFKHDLTRIRRRLSERKISFEKLDSEE-SIRKWNRGELPVALIHPASA 250

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL++F L W LE +QQ + R+     RQ      V V ++I   TIDE 
Sbjct: 251 GHGLNLQSGGNILIWFGLTWSLELYQQTVARL----WRQGQSAETVVVQHIITAGTIDED 306

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           V++ L  K   Q+ L+ A+K    H
Sbjct: 307 VMKALANKDMTQNRLIAAVKARVTH 331


>gi|328913305|gb|AEB64901.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens LL3]
          Length = 424

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 125/197 (63%), Gaps = 7/197 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + +++L       ++ A  +A  + K LQLANGAVY DE    +++HDEK+ ALE I
Sbjct: 228 KYKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAVY-DENGEIQKLHDEKLNALEDI 286

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           ++ AN  PI+V Y +  DL R+Q+ F + +TLD     I +WN GKI +L AHPAS GHG
Sbjct: 287 VDAANGKPILVFYSYKHDLERIQQKFKKAKTLDS-SREIADWNNGKIEMLLAHPASTGHG 345

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+++V+F + W LE +QQ   R+     RQ G K +V V +L+ + T+DE V++
Sbjct: 346 LNLQDGGHVIVWFGMTWSLELYQQANARL----DRQ-GQKHSVIVNHLVTEGTVDEDVMR 400

Query: 183 RLRTKSTIQDLLLNALK 199
            L  K+  Q+ L+ A+K
Sbjct: 401 ALEGKAVGQNALMEAVK 417


>gi|218133421|ref|ZP_03462225.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990796|gb|EEC56802.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
          Length = 457

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 9/197 (4%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE +
Sbjct: 252 YDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALEDL 310

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS GHG
Sbjct: 311 IESANGKPLLVAYWFKHDRERILKRFP-ARDINTKK-DIEDWNEGKIPVALIHPASAGHG 368

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ +V+FSL W LE +QQ+  R+   RQ Q   K  V + +L+ + T+DE +L+
Sbjct: 369 LNLQEGGSTIVWFSLTWSLELYQQLNARL--YRQGQ---KHTVIIEHLVTEGTVDEDILR 423

Query: 183 RLRTKSTIQDLLLNALK 199
            +  K T Q+ ++ A+K
Sbjct: 424 AIEKKDTTQNAMIEAVK 440


>gi|227498325|ref|ZP_03928475.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903787|gb|EEH89705.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 457

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 124/200 (62%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y + ++ L  +L G  + A N+AS T+K  Q+ANGA+Y D+ K    +HD K+ ALE 
Sbjct: 252 ERYDELKKYLVLELPGGEVTAANAASLTLKLSQMANGAIYTDD-KDVVTIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R++K   + R L K+     +WNEGKIP+   HPAS GH
Sbjct: 311 LVESANGKPVLVAYWFKHDKDRIRKRM-EAREL-KESQDFADWNEGKIPVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ILV+F L W +E +QQ   R+     RQ    + V + +++A++TIDE +L
Sbjct: 369 GLNLQQGGSILVWFGLTWSMELYQQTNARL----WRQGQTDKTVIIQHIVAKSTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K   Q  L+ A+K +
Sbjct: 425 KVLEHKDGTQSALIEAVKAD 444


>gi|297587094|ref|ZP_06945739.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
 gi|297575075|gb|EFH93794.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
          Length = 447

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 129/196 (65%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+VY DE+K+   +HD K+ ALE +I
Sbjct: 256 YETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSVY-DEDKNMIHIHDRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY + SDL R++  F   R L K    ++EWN+G IP+   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYKSDLKRIKDRF-DVREL-KASEDLKEWNQGNIPVAIIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++FSL W LE ++Q   R+     RQ G K  V +++++A+ TIDE V++ 
Sbjct: 373 NLQAGGSTLIWFSLTWSLELYEQTNARL----YRQ-GQKETVVIHHILAKGTIDEDVMKA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L  K+  Q  L++A+K
Sbjct: 428 LENKNKTQAALIDAVK 443


>gi|302873665|ref|YP_003842298.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307686611|ref|ZP_07629057.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302576522|gb|ADL50534.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 457

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 125/202 (61%), Gaps = 15/202 (7%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y K ++EL    +  ++ A  +A  + K LQ+ANGAVY DE    KE+H+EK+KAL+ +
Sbjct: 255 KYKKLEKELLLPFEEADVVANTAAVLSNKLLQMANGAVY-DENGEVKEIHNEKLKALDDV 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQK-----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           IE AN   I+V Y +  DL RL K     AF    T  KD   I++WN+GKIP++  HPA
Sbjct: 314 IEAANGKSILVFYSYKHDLERLSKHLKNKAFKVLNT-SKD---IEKWNKGKIPIMLVHPA 369

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ+GGNI+V+F L W LE +QQ   R+   RQ Q    + V V ++IA+ TID
Sbjct: 370 SAGHGLNLQFGGNIIVWFGLTWSLELYQQANARL--YRQGQT---QGVIVNHIIAKGTID 424

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E V++ L  K   Q  L+ A+K
Sbjct: 425 EEVMKALENKEKGQSTLIEAVK 446


>gi|227875061|ref|ZP_03993206.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304390304|ref|ZP_07372257.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|306817348|ref|ZP_07451093.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
 gi|227844339|gb|EEJ54503.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304326060|gb|EFL93305.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304649789|gb|EFM47069.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y  + + W  VHD K+ ALE 
Sbjct: 254 KIYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIYTGDGQ-WAPVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           + E AN +P++VAY F  D  R+   FPQ R L K    I+ WN G+I L   HPAS GH
Sbjct: 313 LYEAANGSPLLVAYWFTHDRKRITARFPQAREL-KTSADIEAWNRGEIALGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+   RQ Q+     V +  L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL--YRQGQS---EPVTITNLVAEGTLDETVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K   Q  L++A+  E
Sbjct: 427 KALDAKDATQAALIDAVAAE 446


>gi|167746056|ref|ZP_02418183.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
 gi|167654571|gb|EDR98700.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
          Length = 452

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 10/204 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   + EL   L    I A N+AS + K  Q+ANGAVY D+E     VH+ K+ ALE 
Sbjct: 254 KKYEDMKAELVLALPEGEITAANAASLSNKLSQMANGAVYADDESIL-SVHERKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPA 117
           IIE AN  P++VAY F  DL R+++   + +     LD D  +++ WN+G++P+   HPA
Sbjct: 313 IIESANGKPLLVAYWFKHDLMRIEQRLNEKKIPFQKLDTD-ASMKRWNKGELPVALIHPA 371

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ GG+ LV+F + W LE +QQ + R+     RQ    R V + +++ Q T+D
Sbjct: 372 SAGHGLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQESRTVTIIHILTQGTVD 427

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +++ L  K + Q  L++A+K E
Sbjct: 428 EKIMKALADKDSTQSALIDAVKAE 451


>gi|302876787|ref|YP_003845420.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307687468|ref|ZP_07629914.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302579644|gb|ADL53656.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 456

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 125/205 (60%), Gaps = 10/205 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +++L   L G  I A N+AS + K  Q+ANGAVY D+ K + E HD+K+ ALE
Sbjct: 255 LDTYEEMKKDLVLSLPGGEITASNAASLSGKLSQMANGAVYTDD-KSYIEFHDKKLDALE 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            IIE AN  P++VAY +  DL R+++       Q + LD D  +I++WN G++P+   HP
Sbjct: 314 DIIEAANGQPLMVAYWYKHDLIRIEERLKSLGVQYQRLDSD-ASIEKWNRGELPVALVHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQ GG+ LV+F + W LE +QQ   R+     RQ      V + +LI++ TI
Sbjct: 373 ASAGHGLNLQSGGSTLVWFGITWSLELYQQTNARL----YRQGQTASCVKIIHLISKGTI 428

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE +++ L  K   Q  L++A+K +
Sbjct: 429 DERIVKALSDKDNTQAALIDAVKAD 453


>gi|297583090|ref|YP_003698870.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141547|gb|ADH98304.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 458

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 128/201 (63%), Gaps = 8/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M +    +R+L   ++GE+I A N+A+ + K LQ+ANGAVY D++     +H+ K+ ALE
Sbjct: 253 MARIEAIKRDLIITVEGEDITASNAAALSGKLLQMANGAVY-DDQGQPIAIHERKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E AN  P+++AY F  DL R+Q A+ +   L  +  +IQ+WNEG+I +   HPAS G
Sbjct: 312 DMVEAANGKPVLIAYWFKHDLDRIQ-AWIEATVL-SNAASIQQWNEGRIQVGLIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ+GG+ L++F L W LE +QQ   R+   RQ Q     +V +++LI + T+DE V
Sbjct: 370 HGLNLQFGGSTLIWFGLTWSLELYQQTNARL--YRQGQT---ESVAIHHLIGKGTLDERV 424

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++ L+ K   Q   ++A+K E
Sbjct: 425 MKALKKKDVSQTAFIDAVKAE 445


>gi|300853544|ref|YP_003778528.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433659|gb|ADK13426.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 453

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 125/198 (63%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +++L   L+GE I+A N+A+ + K  Q+ANGAVY  E+K    +HD+K+ ALE 
Sbjct: 254 KAYDGMKQDLVLSLKGEEIDAVNAAALSNKLCQMANGAVY-GEDKRVFTIHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY FN DL R++K F + R + K    I+ WN G+I +   HPAS GH
Sbjct: 313 LIESANGKPVLVAYWFNHDLERIKKRF-KVREI-KTSKDIKNWNNGEIEVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+     RQ G    V ++++I + TIDE ++
Sbjct: 371 GLNLQAGGSTLIWFGLTWSLELYQQTNARL----WRQ-GQNETVVIHHIITKGTIDEDIM 425

Query: 182 QRLRTKSTIQDLLLNALK 199
           + LR K  +Q  L+ A+K
Sbjct: 426 RALRRKEKVQSDLIAAVK 443


>gi|300909415|ref|ZP_07126876.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893280|gb|EFK86639.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 255 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALEDLV 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL +++  F + R + K P  IQ+WN GKIPL   HPAS GHGL
Sbjct: 314 EAANGKPVLVAYWFKHDLIQIKSRF-KVREI-KTPRDIQDWNAGKIPLALIHPASAGHGL 371

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG  L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  
Sbjct: 372 NLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQ-----PVVIHHIITEGTIDENILAA 426

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 427 LKRKDKTQLALINAVK 442


>gi|323693306|ref|ZP_08107524.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502789|gb|EGB18633.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 447

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 7/199 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + +Y + ++EL  +L    I A N+AS T K  QLANGA+Y D      E HD K+ ALE
Sbjct: 253 VTRYEELKQELVLELPDGEITAANAASLTGKLSQLANGAIYSDTGDT-IEFHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE AN  P++VAY F  DL+R++K F       K    I +WN GKIP+   HPAS G
Sbjct: 312 DIIESANGKPVLVAYWFKHDLSRIKKRFDVREI--KSSKDITDWNAGKIPVAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQ   R+     RQ      V + ++I + TIDE +
Sbjct: 370 HGLNLQAGGSTLIWFGLTWSLELYQQTNARL----WRQGQTSGTVVIEHIITKGTIDERI 425

Query: 181 LQRLRTKSTIQDLLLNALK 199
           L+ L  K   Q+ L++A+K
Sbjct: 426 LKALSKKELTQNALIDAVK 444


>gi|227530256|ref|ZP_03960305.1| helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227349829|gb|EEJ40120.1| helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 451

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 255 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALEDLV 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL +++  F + R + K P  IQ+WN GKIPL   HPAS GHGL
Sbjct: 314 EAANGKPVLVAYWFKHDLIQIKSRF-KVREI-KTPRDIQDWNAGKIPLALIHPASAGHGL 371

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG  L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  
Sbjct: 372 NLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQ-----PVVIHHIITEGTIDENILAA 426

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 427 LKRKDKTQLALINAVK 442


>gi|154504835|ref|ZP_02041573.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
 gi|153794718|gb|EDN77138.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 125/197 (63%), Gaps = 9/197 (4%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE +
Sbjct: 252 YDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALEDL 310

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS GHG
Sbjct: 311 IESANGKPLLVAYWFKHDRERILKRFP-ARDINTKK-DIEDWNEGKIPVALIHPASAGHG 368

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ +V+FSL W LE +QQ+  R+   RQ Q   K  V + +L+ + T+DE +L+
Sbjct: 369 LNLQEGGSTIVWFSLTWSLELYQQLNARL--YRQGQ---KHTVIIEHLVTEGTVDEDILR 423

Query: 183 RLRTKSTIQDLLLNALK 199
            +  K   Q+ ++ A+K
Sbjct: 424 AIEKKDNTQNAMIEAVK 440


>gi|308174984|ref|YP_003921689.1| SWI/SNF chromatin-remodeling complex subunit snf22 [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607848|emb|CBI44219.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 7/197 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + +++L       ++ A  +A  + K LQLANGAVY DE    +++HDEK+ ALE I
Sbjct: 255 KYKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAVY-DENGEIQKLHDEKLNALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           ++ AN  PI+V Y +  DL R+Q+ F + + LD     I +WN GKI +L AHPAS GHG
Sbjct: 314 VDAANGKPILVFYSYKHDLERIQQKFKKAKPLDSS-REIADWNNGKIEMLLAHPASTGHG 372

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+++V+F + W LE +QQ   R+     RQ G K +V V +L+ + T+DE V++
Sbjct: 373 LNLQDGGHVIVWFGMTWSLELYQQANARL----DRQ-GQKHSVIVNHLVTEGTVDEDVMR 427

Query: 183 RLRTKSTIQDLLLNALK 199
            L  K+  Q+ L+ A+K
Sbjct: 428 ALEGKAVGQNALMEAVK 444


>gi|315656930|ref|ZP_07909817.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492885|gb|EFU82489.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 458

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 123/204 (60%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y      W  VH+ K+  LE 
Sbjct: 254 KVYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIY-TSNGQWTAVHERKLDVLED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+   FPQ R L K    I+ WN+G+I L   HPAS GH
Sbjct: 313 LIEAANGNPLLVAYWFTHDRQRITARFPQAREL-KTSADIETWNKGEITLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+   RQ Q+     V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL--YRQGQS---EPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L  K   Q  L++A+  E IH 
Sbjct: 427 KALDAKDATQAALIDAVAHE-IHT 449


>gi|317132765|ref|YP_004092079.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315470744|gb|ADU27348.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 450

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 116/198 (58%), Gaps = 7/198 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y + + +L  +L G+ I A N+A+ T K  QLANGA+Y D+ K   E HD K+ ALE 
Sbjct: 256 KRYEELKNDLVLELHGDEITAANAATLTGKLSQLANGAIYSDDGK-IIEFHDRKLDALED 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE AN  P++VAY F  DL R+++ F       K    I +WN G IP+   HPAS GH
Sbjct: 315 IIEAANGKPLLVAYWFRHDLERIRRRFDVREI--KSSQDIDDWNAGNIPVAVIHPASAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+     RQ    R V + +++  +TID  +L
Sbjct: 373 GLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQKSRTVVIQHIVTASTIDGQIL 428

Query: 182 QRLRTKSTIQDLLLNALK 199
             L+ K   Q  L+ A+K
Sbjct: 429 NALKHKDKTQSALIAAVK 446


>gi|153814245|ref|ZP_01966913.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
 gi|145848641|gb|EDK25559.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
          Length = 457

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 125/197 (63%), Gaps = 9/197 (4%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE +
Sbjct: 252 YDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALEDL 310

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS GHG
Sbjct: 311 VESANGKPLLVAYWFKHDRERILKRFP-ARDINTKK-DIEDWNEGKIPVALIHPASAGHG 368

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ +V+FSL W LE +QQ+  R+     RQ G K  V + +L+ + T+DE +L+
Sbjct: 369 LNLQEGGSTIVWFSLTWSLELYQQLNARL----YRQ-GQKHTVIIEHLVTEGTVDEDILR 423

Query: 183 RLRTKSTIQDLLLNALK 199
            +  K   Q+ ++ A+K
Sbjct: 424 AIEKKDNTQNAMIEAVK 440


>gi|116630100|ref|YP_815272.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095682|gb|ABJ60834.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 450

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 123/196 (62%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 254 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQVVQIHQRKLDALEDLV 312

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY F  DLA++++ F Q R + K    I +WN GKIPL   HPAS GHGL
Sbjct: 313 EAANGKPVLIAYWFKHDLAQIKQRF-QVREI-KTTQDINDWNAGKIPLALIHPASAGHGL 370

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L+++ L W LE +QQ   R+   RQ   G ++ V +Y+LI + TIDE ++  
Sbjct: 371 NLQAGGSTLIWYGLTWSLELYQQTNARLW--RQ---GQQQPVVIYHLITEGTIDENIMTA 425

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 426 LKQKDKTQLALINAVK 441


>gi|320530608|ref|ZP_08031660.1| protein, SNF2 family [Selenomonas artemidis F0399]
 gi|320137135|gb|EFW29065.1| protein, SNF2 family [Selenomonas artemidis F0399]
          Length = 429

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + +REL   +   +I A  +A+ T K LQ+ANG+VY DE+     +H+ K  AL+
Sbjct: 226 MRKYAEMERELVLSIGASDITAVTAAALTGKLLQMANGSVY-DEDGEAVTIHEAKADALD 284

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            II       ++  Y +  D A L +  P+ R L K P  I++WN GKI LL  HPAS G
Sbjct: 285 EIIACNEGKSVMAIYSYRHDRATLLRRHPEAREL-KTPEDIRDWNAGKISLLLVHPASAG 343

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ+GG+I+V++ L W LE++QQ  +R+      + G    V +++LIA++T+DE V
Sbjct: 344 HGLNLQHGGHIVVWYGLTWSLEQYQQTNKRL-----HRPGQTEPVILHHLIAKDTVDEDV 398

Query: 181 LQRLRTKSTIQDLLLNALK 199
           ++ L  KST Q+ +L A+K
Sbjct: 399 MRALERKSTGQEGMLQAVK 417


>gi|238854134|ref|ZP_04644481.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833210|gb|EEQ25500.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 450

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 123/196 (62%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ A+E ++
Sbjct: 254 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQVVQIHQRKLDAIEDLV 312

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY F  DLA++++ F Q R + K    I +WN GKIPL   HPAS GHGL
Sbjct: 313 EAANGKPVLIAYWFKHDLAQIKQRF-QVREI-KTTQDINDWNAGKIPLALIHPASAGHGL 370

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L+++ L W LE +QQ   R+   RQ   G ++ V +Y+LI + TIDE ++  
Sbjct: 371 NLQAGGSTLIWYGLTWSLELYQQTNARLW--RQ---GQQQPVVIYHLITEGTIDENIMTA 425

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 426 LKQKDKTQLALINAVK 441


>gi|298346380|ref|YP_003719067.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236441|gb|ADI67573.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 452

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 11/205 (5%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+Y  E      VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAANAAVLAGKLTQLASGAIY-TEAGDSIVVHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ R L K    I+ WN G+IPL   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQARQL-KTSADIEAWNGGEIPLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL+++SL W LE HQQ   R+     RQ G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGGSILIWYSLTWSLELHQQTNARL----YRQ-GQTKPVTITHIATKDSIDQQIL 426

Query: 182 QRLRTKSTIQDLLLNA----LKKET 202
           + L +K+  Q  L++A    LK ET
Sbjct: 427 RALESKNMTQSALIDAVAQTLKGET 451


>gi|42779467|ref|NP_976714.1| phage-associated helicase [Bacillus cereus ATCC 10987]
 gi|42735383|gb|AAS39322.1| phage-associated helicase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +I
Sbjct: 256 YDRFREEMVLEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY +N DL R++  F   R + K    I++WN G I +   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYNHDLERIKAKF-NVREI-KTSKDIKDWNNGDISVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+     RQ G    V ++++I + TIDE V+  
Sbjct: 373 NLQSGGSTLIWFGLTWSLELYQQTNARL----WRQ-GQNETVVIHHIITKGTIDEDVMNA 427

Query: 184 LRTKSTIQDLLLNALK 199
           LR K   Q  L+NA+K
Sbjct: 428 LRRKEKTQSDLINAVK 443


>gi|313898006|ref|ZP_07831545.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312957034|gb|EFR38663.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 447

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 117/199 (58%), Gaps = 7/199 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + +Y + + +L  +L    I A N+AS T K  QLANGA+Y D  +   E HD K+ ALE
Sbjct: 253 VARYEELKSDLVLELPDGEITAANAASLTGKLSQLANGAIYSDTGE-IIEFHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE AN  P++VAY F  DL+R++K F       K    I +WN GKIP+   HPAS G
Sbjct: 312 DIIESANGKPVLVAYWFKHDLSRIKKRFDVREI--KSSKDITDWNAGKIPVAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQ   R+     RQ      V + ++I + TIDE +
Sbjct: 370 HGLNLQAGGSTLIWFGLTWSLELYQQTNARL----WRQGQTSGTVVIEHIITKGTIDERI 425

Query: 181 LQRLRTKSTIQDLLLNALK 199
           L+ L  K   Q+ L++A+K
Sbjct: 426 LKALSKKELTQNALIDAVK 444


>gi|323484110|ref|ZP_08089480.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
 gi|323402552|gb|EGA94880.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 8/199 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M  YH+ ++++    +  +I+A N+A  + K +Q+ANGAVY DE    K +HD K++ALE
Sbjct: 251 MNLYHQLEKDMLVPYEDGDIDAVNAAGLSNKLMQMANGAVY-DENGAVKHIHDRKLEALE 309

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E AN  P++VAY +  DLAR++        LD      ++WN G+IP+   HPAS G
Sbjct: 310 DLVEAANGKPVLVAYWYKHDLARIRDRLGVAE-LDAAE-DFRKWNAGEIPVAVIHPASAG 367

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQM  R+   RQ Q   K  V +++LIA++T+DE V
Sbjct: 368 HGLNLQTGGSTLIWFGLTWSLELYQQMNARL--WRQGQ---KETVVIHHLIAKDTLDERV 422

Query: 181 LQRLRTKSTIQDLLLNALK 199
           +  L  K   Q  L++A++
Sbjct: 423 MTALEKKDCGQSALVDAVR 441


>gi|259502599|ref|ZP_05745501.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
 gi|259169414|gb|EEW53909.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
          Length = 451

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 119/196 (60%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE +I
Sbjct: 255 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALEDLI 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL+++++ F   R + K    IQ+WN G IPL   HPAS GHGL
Sbjct: 314 EAANGKPVLVAYWFKHDLSQIKQRF-TAREI-KTVKDIQDWNAGNIPLALIHPASAGHGL 371

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG  L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  
Sbjct: 372 NLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQ-----TVVIHHIITEGTIDENILAA 426

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 427 LKRKDKTQLALINAVK 442


>gi|304439204|ref|ZP_07399122.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372336|gb|EFM25924.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 448

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 127/196 (64%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   +++L  +++ ++I+A N+A+ + K LQ+A+G+VY DE K+   +H+ K+ ALE +I
Sbjct: 256 YETLKKDLVVNIKDKDIDAVNAAALSNKLLQMASGSVY-DEYKNMIHIHNRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY + SDL R++  F   R L K     +EWN+ KIP+   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYKSDLKRIKDRF-DVREL-KTSEDFKEWNQSKIPVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++FSL W LE ++Q   R+     RQ G K  V +++++A+ TIDE V++ 
Sbjct: 373 NLQAGGSTLIWFSLTWSLELYEQTNARL----YRQ-GQKETVVIHHILAKGTIDEDVMKA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L  K+  Q  L+ A+K
Sbjct: 428 LENKNKTQAALIEAVK 443


>gi|219855697|ref|YP_002472819.1| hypothetical protein CKR_2354 [Clostridium kluyveri NBRC 12016]
 gi|219569421|dbj|BAH07405.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 469

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +I
Sbjct: 272 YDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDLI 330

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY +N DL R++  F   R + K    I++WN G I +   HPAS GHGL
Sbjct: 331 EGANGKPVLIAYWYNHDLERIKAKF-NVREI-KTSKDIKDWNNGDISVAVIHPASAGHGL 388

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+     RQ G    V ++++I + TIDE V+  
Sbjct: 389 NLQSGGSTLIWFGLTWSLELYQQTNARL----WRQ-GQNETVVIHHIITKGTIDEDVMNA 443

Query: 184 LRTKSTIQDLLLNALK 199
           LR K   Q  L+NA+K
Sbjct: 444 LRRKEKTQSDLINAVK 459


>gi|307317157|ref|ZP_07596598.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
 gi|306897245|gb|EFN27990.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
          Length = 522

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 123/205 (60%), Gaps = 12/205 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDE 54
           MK+Y +F++ L    Q  ++EA +    T K LQ ANG +Y      ++ ++    +HD 
Sbjct: 319 MKEYREFEKTLVA--QNYDVEAVSRGVLTGKLLQFANGGLYRLDEDVFNAKRETIAIHDY 376

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K+KALE I+E+A    ++VAY F  D  R++K FP+    D++P  +++WN GKI +  A
Sbjct: 377 KLKALESIVEEAAGQNVLVAYSFQFDKDRIRKKFPKAVFFDEEPNFVKKWNAGKIQMGVA 436

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           HPAS GHGLNLQ+GG+I V+F L W LE   Q   R+    Q+      +VF++ +IA+ 
Sbjct: 437 HPASIGHGLNLQHGGHIQVWFGLTWSLELWDQFNRRLARPGQKN----HSVFIHVIIAKG 492

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T+DE   + L+ K   QD ++NA++
Sbjct: 493 TMDEAQYETLQIKGVTQDQIMNAVR 517


>gi|153955274|ref|YP_001396039.1| Phage-related DNA helicase [Clostridium kluyveri DSM 555]
 gi|146348132|gb|EDK34668.1| Predicted Phage-related DNA helicase [Clostridium kluyveri DSM 555]
          Length = 453

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +I
Sbjct: 256 YDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY +N DL R++  F   R + K    I++WN G I +   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYNHDLERIKAKF-NVREI-KTSKDIKDWNNGDISVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+     RQ G    V ++++I + TIDE V+  
Sbjct: 373 NLQSGGSTLIWFGLTWSLELYQQTNARL----WRQ-GQNETVVIHHIITKGTIDEDVMNA 427

Query: 184 LRTKSTIQDLLLNALK 199
           LR K   Q  L+NA+K
Sbjct: 428 LRRKEKTQSDLINAVK 443


>gi|255306562|ref|ZP_05350733.1| SNF2-related protein [Clostridium difficile ATCC 43255]
          Length = 456

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 9/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y D +K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDKDIITASSAAVAANKLLQLANGAIY-DNDKNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            II+ +N  PII+ Y++  D  RL K F   + RT++ +   I +WN G+I LL  HPAS
Sbjct: 314 EIIDVSNGKPIIIFYNYKHDYNRLMKEFKSLKPRTIE-NSKDIYDWNNGRIQLLLCHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+    QR+      V +++LI + TIDE
Sbjct: 373 TGHGLNLQSGGSIIVWFGLTWSLELYQQANARLYRQGQRE-----TVIIHHLICKGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V++ L  K   Q  LL A+K
Sbjct: 428 QVMEALENKDKGQSALLEAVK 448


>gi|254975145|ref|ZP_05271617.1| SNF2-related protein [Clostridium difficile QCD-66c26]
 gi|255092535|ref|ZP_05322013.1| SNF2-related protein [Clostridium difficile CIP 107932]
 gi|255314272|ref|ZP_05355855.1| SNF2-related protein [Clostridium difficile QCD-76w55]
 gi|255516952|ref|ZP_05384628.1| SNF2-related protein [Clostridium difficile QCD-97b34]
 gi|255650054|ref|ZP_05396956.1| SNF2-related protein [Clostridium difficile QCD-37x79]
 gi|260683194|ref|YP_003214479.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260686790|ref|YP_003217923.1| snf2-related protein [Clostridium difficile R20291]
 gi|306519589|ref|ZP_07405936.1| snf2-related protein [Clostridium difficile QCD-32g58]
 gi|260209357|emb|CBA62788.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260212806|emb|CBE03974.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile R20291]
          Length = 456

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 9/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y D +K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDRDIITASSAAVAANKLLQLANGAIY-DNDKNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            II+ +N  PIIV Y++  D  RL K F   + RT++ +   I +WN G+I LL  HPAS
Sbjct: 314 EIIDVSNGKPIIVFYNYKHDYNRLMKEFKSLKPRTIE-NSKDIYDWNNGRIQLLLCHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+    QR+      V +++LI + TIDE
Sbjct: 373 TGHGLNLQSGGSIIVWFGLTWSLELYQQANARLYRQGQRE-----TVIIHHLICKGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V++ +  K   Q  LL A+K
Sbjct: 428 QVMEAIENKDKGQSALLEAVK 448


>gi|134299061|ref|YP_001112557.1| SNF2-like protein [Desulfotomaculum reducens MI-1]
 gi|134051761|gb|ABO49732.1| SNF2-related protein [Desulfotomaculum reducens MI-1]
          Length = 454

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 124/198 (62%), Gaps = 7/198 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + +R+L   L   ++ A  +A    K LQ+ANGAVY DE    +E H  K++ALE +
Sbjct: 255 QYEQLERDLLLPLADGDVVANTAAVLANKLLQMANGAVY-DENGMAQEFHKAKLEALEGV 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE+A   P++V Y +  DL R+++ F Q +  + K    I+ WN+GK+ ++ AHPAS GH
Sbjct: 314 IEEAAGKPVLVFYSYRHDLDRIKEHFKQYKPKELKTAEDIKNWNDGKVQIMLAHPASAGH 373

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNI+ +FS  W LE +QQ   R+     RQ G +RAV +++L+A+ TIDE V+
Sbjct: 374 GLNLQAGGNIIAWFSTPWSLELYQQANARL----HRQ-GQQRAVIIHHLVAKGTIDEDVI 428

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K   Q+ LL A+K
Sbjct: 429 RVLGYKERGQNALLEAVK 446


>gi|256847828|ref|ZP_05553273.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715517|gb|EEU30493.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 451

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+  N+ S + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 255 YDELNAQLVVSTQGKQIDVLNATSLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALEDLV 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL +++  F + R + K P  IQ+WN G IPL   HPAS GHGL
Sbjct: 314 EAANGKPVLVAYWFKHDLIQIKSRF-KVREI-KTPRDIQDWNAGNIPLALIHPASAGHGL 371

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG  L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  
Sbjct: 372 NLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQ-----PVVIHHIITEGTIDENILAA 426

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 427 LKRKDKTQLALINAVK 442


>gi|220930213|ref|YP_002507122.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000541|gb|ACL77142.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 453

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K    +HD K+ ALE +I
Sbjct: 256 YDHFREEMVLEFGDEEIDAMNAAVLSGKLLQMANGAIY-DDDKKPHIIHDRKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P+++AY +N DL R++  F   R + K    I++WN G I +   HPAS GHGL
Sbjct: 315 EGANGKPVLIAYWYNHDLERIKAKF-NVREI-KTSKDIKDWNNGDISVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+     RQ G K  V ++++I + TIDE V+  
Sbjct: 373 NLQSGGSTLIWFGLTWSLELYQQTNARL----WRQ-GQKETVVIHHIITKGTIDEDVMGA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 428 LKRKEKTQTDLINAVK 443


>gi|288799809|ref|ZP_06405268.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333057|gb|EFC71536.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 458

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 129/202 (63%), Gaps = 10/202 (4%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y+KF+R+   +L   + E I A ++A+ + K LQ + GA+Y DE+ +   +H +K++A
Sbjct: 256 KDYNKFERDCVLELFTEEDETITAASAAALSNKLLQFSGGAIY-DEDHNTHVIHTKKLEA 314

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPA 117
           LE ++E AN  PI++ Y F  + +R+ + F   R +  D P TI+ WN+G+I +  AHPA
Sbjct: 315 LEDVVEAANGQPILLFYAFKHEESRIIEHFKNLRVVKLDTPETIKAWNKGEIDIAIAHPA 374

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ+GGNI+V++ L W LE +QQ   R+     RQ G  + V +Y+LI++ TID
Sbjct: 375 SVGHGLNLQHGGNIIVWYGLTWSLELYQQANARL----HRQ-GQSKPVKIYHLISEGTID 429

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +++ L  K   Q+ L+ A+K
Sbjct: 430 EEIVKALSNKDKTQNGLMQAVK 451


>gi|297585287|ref|YP_003701067.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297143744|gb|ADI00502.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 460

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 127/202 (62%), Gaps = 13/202 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E     +  ++ A ++A    K LQLANGA+Y DE    +EVHDEK++AL+ 
Sbjct: 254 RAYTQLEKEWLLAFEDADVLAGSAAVVANKLLQLANGAIY-DETGDVQEVHDEKLEALKE 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK---AF-PQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +IE AN  P++V Y++  D  R+ K   AF P+    D+D   I++WN+G +P+L AHPA
Sbjct: 313 LIESANGKPVLVYYNYQHDRDRILKHLKAFKPRVLKTDQD---IRDWNKGNVPVLLAHPA 369

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ GG+++V+F L W LE +QQ   R+     RQ G    V V++LI + T+D
Sbjct: 370 SAGHGLNLQAGGHVMVWFGLNWSLELYQQANARL----HRQ-GQTETVVVHHLITKGTMD 424

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E V+  L+ K T Q+ L+ A+K
Sbjct: 425 ERVMAALKQKDTSQEALIAAVK 446


>gi|217965845|ref|YP_002351523.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|217335115|gb|ACK40909.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|307569607|emb|CAR82786.1| SNF2/RAD54 helicase family protein [Listeria monocytogenes L99]
          Length = 463

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 129/198 (65%), Gaps = 7/198 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E   + +  ++ A ++A  + K LQLANGA+Y DE + ++E+H++K++AL  I
Sbjct: 259 QYSELEKEFLLEFEHSDVVADSAAVLSNKLLQLANGAIY-DENQEYQEIHNKKLEALADI 317

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE++   P++V Y +  D  R+     Q +    KD  +I++WN GK  +L AHPAS GH
Sbjct: 318 IEESVGQPVLVFYSYKHDEKRILNHLKQYKPEKIKDSRSIRKWNAGKTRVLLAHPASAGH 377

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G K++V V++++A++T+DE V+
Sbjct: 378 GLNLQDGGHIVVWFGLTWSLELYQQANARL--FRQ---GQKKSVIVHHIVAKDTLDEKVI 432

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L +K   QD LL A+K
Sbjct: 433 EALSSKKVGQDALLEAVK 450


>gi|57234142|ref|YP_181811.1| SNF2 domain-containing protein [Dehalococcoides ethenogenes 195]
 gi|57224590|gb|AAW39647.1| SNF2 domain protein [Dehalococcoides ethenogenes 195]
          Length = 448

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 116/201 (57%), Gaps = 7/201 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y   ++E    L    + A N+AS T K  QLANGA+Y D  +   E HD K+ ALE I
Sbjct: 255 RYEDLKQEFILQLPDGEVTAANAASLTGKLSQLANGAIYADTGE-IIEFHDRKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL+R++  F   R + K    I +WN GKIP+   HPAS GHG
Sbjct: 314 IEAANEKPLLVAYWFRHDLSRIKNRF-NVREI-KTSRDIADWNAGKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TIDE +++
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQGQESHTVVIQHIITKGTIDERIMR 427

Query: 183 RLRTKSTIQDLLLNALKKETI 203
            L  K   Q  L++A+K E +
Sbjct: 428 ALTKKELTQSALIDAVKAEVV 448


>gi|304436366|ref|ZP_07396342.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370635|gb|EFM24284.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 447

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y     +L   ++G+ + A N+   + K  Q+ANG VY D+      +HD K+ ALE 
Sbjct: 252 KMYDSMCEQLVLQMKGDEVTAANAGVLSGKLAQMANGTVYTDDGSTL-HIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE  N  P++V Y F  D  R++K  P  R LD D   I  WN G+I +   HPAS GH
Sbjct: 311 IIESMNGKPLLVPYWFRHDAERIEKRLPCVR-LDTDDA-IARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+     RQ      V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQNSNTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L+ K   Q  L+ A+K E
Sbjct: 425 RALKRKDKTQTALIEAVKAE 444


>gi|57233543|ref|YP_180823.1| SNF2 family helicase [Dehalococcoides ethenogenes 195]
 gi|57223991|gb|AAW39048.1| SNF2 family helicase, putative [Dehalococcoides ethenogenes 195]
          Length = 513

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 123/204 (60%), Gaps = 10/204 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y + +++L   L   +I A N+A+ T K  QLANGA+Y D+   +  +HD K+ ALE 
Sbjct: 313 QRYDELKQDLVLQLPDGDITAANAAALTGKLCQLANGAIYTDDGDTFT-IHDRKLDALEN 371

Query: 62  IIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           IIE A+  PI+VAY F  DLAR    LQK       LD    +I++WN G++P+   HPA
Sbjct: 372 IIEAASGKPILVAYWFKHDLARITERLQKLHIPFSKLDSAD-SIRKWNAGELPVALIHPA 430

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ GG+ +V+F L W LE +QQ   R+     RQ      V V +++A++TID
Sbjct: 431 SAGHGLNLQSGGSCIVWFGLTWSLELYQQTNARL----WRQGQNAETVVVQHIVAKDTID 486

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +L+ L  K + Q  L+ A+K +
Sbjct: 487 ERILKVLSKKDSTQAALIAAVKAD 510


>gi|300764700|ref|ZP_07074691.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
 gi|300514586|gb|EFK41642.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
          Length = 451

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 122/198 (61%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y +F+ +L   L+   I+A N+A  + K LQ+ANGA+Y DE      +HD+K+ ALE 
Sbjct: 255 QKYDEFKADLVLQLKEATIDAANTAVLSNKLLQMANGAIY-DEFNVSHHIHDQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE  N  PI++AY F  DL R+++ F   +   K    I +WNEG IP+   HPAS GH
Sbjct: 314 LIEGTNGKPILIAYWFQHDLERIKERFNVRQI--KTSQDIIDWNEGSIPIAVIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE + Q   R+   RQ Q+     V ++++IA++TIDE V+
Sbjct: 372 GLNLQAGGSTLVWFGLTWSLELYLQTNARLW--RQGQSD---TVVIHHIIAKDTIDEDVM 426

Query: 182 QRLRTKSTIQDLLLNALK 199
             L+ K   Q  L++A+K
Sbjct: 427 LALKRKDKTQSCLIDAVK 444


>gi|91214213|ref|NP_919000.2| helicase [Burkholderia phage BcepNazgul]
 gi|88604906|gb|AAQ63367.2| helicase [Burkholderia phage BcepNazgul]
          Length = 522

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 9/199 (4%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
           Y KF+R+   DL  G  IEA  +A+   K LQLA+G VY  E+K HW  VHD KI+ L  
Sbjct: 309 YKKFERDFILDLPDGTEIEAETAAALNQKLLQLASGCVYDAEKKTHW--VHDHKIEDLTQ 366

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E+ N  P++VAY F S L RL+KAFP+ R +D +   + +WN+GKI +L  HPAS  H
Sbjct: 367 LVEELNGEPLLVAYWFKSSLERLKKAFPRARVMDAEGKLVGDWNKGKIKILLVHPASVAH 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG+ L  + +++ LE + Q+I R+    QR       V V++     T+D++ +
Sbjct: 427 GLNMQKGGHHLYIYDIFYSLELYLQLIGRLARQGQRH-----VVRVHHATMIGTVDDVAV 481

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L  K   QD L   L++
Sbjct: 482 SSLTRKRNAQDDLFVRLRR 500


>gi|300909460|ref|ZP_07126921.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893325|gb|EFK86684.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 255 YDELNAQLVVSAQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIIQIHQRKLDALEDLV 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL +++  F + R + K P  IQ+WN GKIPL   HPAS GHGL
Sbjct: 314 EAANGKPVLVAYWFKHDLIQIKSRF-KVREI-KTPRDIQDWNAGKIPLALIHPASAGHGL 371

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG  L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  
Sbjct: 372 NLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQ-----PVVIHHIITEGTIDENILAA 426

Query: 184 LRTKSTIQDLLLNALK 199
           L+ K   Q  L+NA+K
Sbjct: 427 LKRKDKTQLALINAVK 442


>gi|317501093|ref|ZP_07959299.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897480|gb|EFV19545.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 450

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 116/199 (58%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y   ++EL   L    + A N+AS T K  QLANGA+Y D  +   E HD K+ ALE I
Sbjct: 255 RYEDLKQELILQLPDGEVTAANAASLTGKLSQLANGAIYADTGEV-IEFHDRKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL+R++  F   R + K    I +WN GKIP+   HPAS GHG
Sbjct: 314 IEAANEKPLLVAYWFRHDLSRIKNRF-NVREI-KTSRDIADWNAGKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TIDE +++
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQGQESGTVVIQHIITKGTIDERIVK 427

Query: 183 RLRTKSTIQDLLLNALKKE 201
            L  K   Q  L++A+K +
Sbjct: 428 ALSKKEMTQTALIDAVKAD 446


>gi|325684273|gb|EGD26446.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 633

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+ DEKI+    
Sbjct: 434 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFDEKIECC-F 492

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 493 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 552

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+   RQ   G K+ V +++L+ + TID
Sbjct: 553 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL--YRQ---GQKKPVIIHHLLTKGTID 607

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 608 RHVLDSLKKKDLSQQALLAAVRR 630


>gi|313895516|ref|ZP_07829072.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975642|gb|EFR41101.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 454

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 118/196 (60%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + ++++   L G  I+A ++A+ + K LQ+ANGAVY +  K    +HD K+ ALE ++
Sbjct: 256 YDRMKQDMVVALGGTEIDAVSAAALSGKLLQMANGAVYTENGKS-VHLHDRKLDALEDLV 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY +  DL R+++  P      +    I+ WN  KI +   HPAS GHGL
Sbjct: 315 ESANGKPVLVAYWYRHDLERIKERLPVQEI--RSSADIENWNAEKISVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ+GG+ L++F L W LE +QQ   RI   RQ Q G    V ++++I   TIDE V+Q 
Sbjct: 373 NLQFGGSTLIWFGLTWSLELYQQTNARI--YRQGQKG---TVVIHHIITVGTIDENVMQA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L  K+  Q  L++A+K
Sbjct: 428 LGRKNKTQTALIDAVK 443


>gi|315654958|ref|ZP_07907863.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315490919|gb|EFU80539.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 452

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 122/205 (59%), Gaps = 11/205 (5%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+Y  E      VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAVNAAVLAGKLTQLASGAIY-TEAGDSIVVHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ   L K    I+ WN+G+IP+   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQASQL-KTSADIEAWNDGEIPIGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ G +IL+++SL W LE +QQ   R+     RQ G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGSSILIWYSLTWSLELYQQTNARL----YRQ-GQTKPVTITHIATKDSIDQRIL 426

Query: 182 QRLRTKSTIQDLLLNA----LKKET 202
             L +K+  Q  L++A    LK ET
Sbjct: 427 SALESKNMTQSALIDAVAQTLKGET 451


>gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 111/184 (60%), Gaps = 8/184 (4%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           +GE I A N+AS T K  QLANGA+Y D+E +  E HD K+ ALE IIE AN  P++VAY
Sbjct: 269 EGE-ITAANAASLTGKLSQLANGAIY-DDESNIVEFHDRKLDALEDIIESANGKPLLVAY 326

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F  DL R++K F       K    I +WN G IP+   HPAS GHGLNLQ GG+ L++F
Sbjct: 327 WFKHDLQRIKKHFDVREI--KTSKDIIDWNNGDIPVAVIHPASAGHGLNLQAGGSTLIWF 384

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W LE +QQ   R+     RQ      V + ++I + TIDE +L+ L  K   Q+ L+
Sbjct: 385 GLTWSLELYQQTNARL----WRQGQSSGTVVIEHIITKGTIDERILKALSLKEVSQNALI 440

Query: 196 NALK 199
           +A+K
Sbjct: 441 DAVK 444


>gi|303239099|ref|ZP_07325629.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302593437|gb|EFL63155.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 452

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 115/196 (58%), Gaps = 8/196 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K +RE        +++A N+A    K LQ++NGAVY DE    + +H  K++ LE +I
Sbjct: 256 YRKLEREALLPFVDGDVDAVNAAVLAGKLLQMSNGAVY-DENGGVRSIHRRKLEMLEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++V Y +  D  R+ KAF + R +D  P  I +WN+G+I +  AHPAS GHGL
Sbjct: 315 ESANGKPVLVYYAYKHDRERILKAF-KARDIDT-PKDISDWNDGRIGIAIAHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ +++F L W LE +QQ   RI     RQ G    V V ++I   T+DE V+  
Sbjct: 373 NLQAGGSTIIWFGLTWSLELYQQANGRI----HRQ-GQTETVIVNHIITAGTMDEQVMAA 427

Query: 184 LRTKSTIQDLLLNALK 199
           L  K T Q  L+NA++
Sbjct: 428 LNRKETGQTALINAVR 443


>gi|238018846|ref|ZP_04599272.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
 gi|237864612|gb|EEP65902.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
          Length = 428

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 122/197 (61%), Gaps = 8/197 (4%)

Query: 4   YHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y + +RE    L  ++ + A N+A+   K LQLANG++Y D+      VH+EKI+ L+ +
Sbjct: 231 YKQMEREHVLSLASDDDVSALNAAALAGKLLQLANGSIYNDD-GEIVVVHNEKIERLKEL 289

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E     P++V Y+F  DL  +++AFP+   L  D   + +WN+G I +L AHPAS G+G
Sbjct: 290 VETNEGKPMLVFYNFKHDLQSIKEAFPKAVELKTDD-DVAKWNKGNIQMLLAHPASAGYG 348

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNI+V++ L W LE++QQ   R+     RQ G  + V +++L+ + T+DE V++
Sbjct: 349 LNLQAGGNIIVWYGLTWSLEQYQQANARL----HRQ-GQTQPVIIHHLVTKGTMDEQVMK 403

Query: 183 RLRTKSTIQDLLLNALK 199
            L  K   QD LL A+K
Sbjct: 404 ALERKEAGQDALLEAIK 420


>gi|104773892|ref|YP_618872.1| hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422973|emb|CAI97646.1| Hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 638

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDSSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+   RQ Q   K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL--YRQGQ---KKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|300812688|ref|ZP_07093097.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496315|gb|EFK31428.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 636

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 437 KSYQQLKKDQVLDLPGQEISADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 495

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 496 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 555

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+   RQ Q   K+ V +++L+ + TID
Sbjct: 556 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL--YRQGQ---KKPVIIHHLLTKGTID 610

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 611 RHVLDSLKKKDLSQQALLAAVRR 633


>gi|116513899|ref|YP_812805.1| SNF2 family DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093214|gb|ABJ58367.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125562|gb|ADY84892.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 638

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+   RQ Q   K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL--YRQGQ---KKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|313896513|ref|ZP_07830064.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974937|gb|EFR40401.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 447

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 114/200 (57%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   +L   ++G+ + A N+   + K  Q+ANGAVY D+      +HD K+ ALE 
Sbjct: 252 KIYTEMCDQLVLQMKGDEVTAANAGVLSGKLAQMANGAVYTDDGTTL-HIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +E  N  P++VAY F  D  R++K     R LD D   I  WN G+I +   HPAS GH
Sbjct: 311 FVESMNGKPLLVAYWFRHDAERIEKRVTCVR-LDTDDA-IARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+     RQ    + V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQTAKTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L+ K   Q  L+ A+K E
Sbjct: 425 RALKRKDKTQAALIEAVKAE 444


>gi|319757800|gb|ADV69742.1| phage related DNA helicase [Streptococcus suis JS14]
          Length = 458

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 123/205 (60%), Gaps = 11/205 (5%)

Query: 3   QYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +Y +F++E +  +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE 
Sbjct: 255 KYSQFKKEYVMSELDGLEVTAANAASLTNKLVQLSNGAVYSDDHTV-VALHEQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           I+E AN  P++VAY F  DLAR+    +K   + R L K    I+EWN+G +P+   HPA
Sbjct: 314 ILESANGEPVLVAYWFKHDLARIINRIEKLRVKSRVL-KTEEDIREWNKGNVPVGLLHPA 372

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TID
Sbjct: 373 GAGHGLNLQKGGHNLVWFGLTWSLELYQQTNARL----WRQGQESETVVIQHIVTEGTID 428

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +L+ L  K   Q+ L+ A+K + 
Sbjct: 429 EEILKALENKDAQQERLIEAVKAQV 453


>gi|77412062|ref|ZP_00788388.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
 gi|77161867|gb|EAO72852.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
          Length = 458

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 124/203 (61%), Gaps = 9/203 (4%)

Query: 4   YHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++ +  DL+   + A N+AS + K LQ+ANGAVY ++ +    +HD+K+ ALE I
Sbjct: 256 YKQFKKDYVLADLENGEVTAANAASLSNKLLQMANGAVYSNDHQV-VSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  D+ R+++   + +   T+ K    I+EWN+GKI +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDVQRIEERLVKLKVKGTILKTEEDIREWNKGKISVGLLHPASA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ Q TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLIWSLELYQQTNARL----WRQGQQADTVVIQHIVTQGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L +K   Q  L+ A+K + 
Sbjct: 431 ILKALESKDAQQSRLIEAVKAQV 453


>gi|313123514|ref|YP_004033773.1| superfamily ii DNA/RNA helicase, snf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280077|gb|ADQ60796.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 626

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ + A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 427 KSYQQLKKDQVLDLPGQELSADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 485

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 486 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 545

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+   RQ Q   K+ V +++L+ + TID
Sbjct: 546 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL--YRQGQ---KKPVIIHHLLTKGTID 600

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 601 RHVLDSLKKKDLSQQALLAAVRR 623


>gi|225573262|ref|ZP_03782017.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039394|gb|EEG49640.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
          Length = 454

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 12/205 (5%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y  F+R+L   L    I A N+A+ + K  Q+ANGAVY DE +    +HD K+ ALE 
Sbjct: 254 QRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAVYTDEGET-IAIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           IIE     P++VAY F  DL R+         P  R LD    +I+ WN G++P+   HP
Sbjct: 313 IIESMGGKPLLVAYWFRHDLERITGRLHKLKIPFSR-LDSSK-SIRRWNSGELPVALIHP 370

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TI
Sbjct: 371 ASAGHGLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQQSDIVVIQHIITKGTI 426

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE +++ L  K T Q  L+ A+K +
Sbjct: 427 DERIMKALSEKDTTQAALIEAVKAD 451


>gi|331090252|ref|ZP_08339139.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401871|gb|EGG81446.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 453

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 8/198 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++    +  +++A N+A+ + K LQ+ANGAVY DE    + +HD+K+ ALE 
Sbjct: 250 KLYRQKEKDMLLPFEDGDVDAVNAAALSGKLLQMANGAVY-DENHKVRHIHDKKLDALED 308

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DL R+ + F       K    I++W EGKIP+   HPAS GH
Sbjct: 309 LIEAANGKPVLVAYWYQHDLDRIVERFKAVPL--KAAGDIRKWKEGKIPVAAIHPASAGH 366

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG+IL++F L W LE + Q   R+    QR+      V +Y++I + T+DE  +
Sbjct: 367 GLNIQDGGHILIWFGLTWSLELYMQCNARLWRQGQRE-----TVMIYHIINKGTLDEDAM 421

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K   Q  +++A+K
Sbjct: 422 RSLEQKDCGQSAIIDAVK 439


>gi|167757891|ref|ZP_02430018.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
 gi|167664545|gb|EDS08675.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
          Length = 454

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 117/206 (56%), Gaps = 12/206 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y  F+R+L   L    I A N+A+ + K  Q+ANGAVY D+ +    +HD K+ ALE
Sbjct: 253 VQRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAVYTDDGET-IAIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            IIE     P++VAY F  DL R+     +   P  R LD    +I  WN G++P+   H
Sbjct: 312 DIIESMGGKPLLVAYWFRHDLERIAGRLHKLKIPFSR-LDSSE-SIHRWNAGELPVALIH 369

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V V ++I + T
Sbjct: 370 PASAGHGLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQQSDTVVVQHIITKGT 425

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           IDE +++ L  K T Q  L+ A+K +
Sbjct: 426 IDERIMKALSEKDTTQAALIEAVKAD 451


>gi|260161780|emb|CAZ39324.1| phage related DNA helicase [Streptococcus suis]
 gi|313575362|emb|CBR26891.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 458

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 11/205 (5%)

Query: 2   KQYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++Y +F++E +  +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE
Sbjct: 254 EKYIQFKKEYVLSELDGLEVTAANAASLTNKLVQLSNGAVYSDDHTV-VSLHEQKLDALE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            I+E AN  PI+VAY F  DLAR    L+K   + + L K    I+EWN+G +P+   HP
Sbjct: 313 DILESANGEPILVAYWFKHDLARIMSRLEKLKLKSQVL-KTEEDIREWNKGNVPVGLLHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A  GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TI
Sbjct: 372 AGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQESETVVIQHIVTEGTI 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE +L+ L  K   Q+ L+ A+K +
Sbjct: 428 DEEILKALENKDAQQERLIAAVKAQ 452


>gi|76788487|ref|YP_329361.1| prophage LambdaSa04, SNF2 family helicase [Streptococcus agalactiae
           A909]
 gi|76563544|gb|ABA46128.1| prophage LambdaSa04, helicase, SNF2 family [Streptococcus
           agalactiae A909]
          Length = 458

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 9/203 (4%)

Query: 4   YHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++ +  DL+   + A N+AS + K +Q+ANGAVY D+++    +HD+K+ ALE I
Sbjct: 256 YSQFKKDYIMADLEDTEVTAANAASLSNKLVQMANGAVYSDDQQV-VSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  DL R+++   + +   T+ K    I+EWN+G + +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDLKRIEERLAKLKVKGTVLKTEEDIREWNKGNVSVGLLHPASS 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQQAETVVIQHIVTECTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q  LL A+K + 
Sbjct: 431 ILKVLENKDAQQARLLEAVKAQV 453


>gi|253581729|ref|ZP_04858953.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
 gi|251836078|gb|EES64615.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
          Length = 459

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 128/202 (63%), Gaps = 9/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK+Y + ++++  +L+ + I+  ++A+ + K +QLANGA+Y DE +   EVH+ KI+A  
Sbjct: 255 MKEYEELEKKMILELEDKTIDVTSAAALSNKLMQLANGAIY-DENRGIHEVHNCKIEAFM 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPA 117
            +IEK N    +V Y+F  DLARLQ+A  +     +   T+++   WN+ +I +L  HPA
Sbjct: 314 ELIEKLNGKAALVFYNFQHDLARLQEALKKTGLKVRILKTVEDQDAWNKKEIDILLTHPA 373

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +GLNLQ GGN +++F L W LE +QQ  +R+     RQ G K  V V++L+ Q+T D
Sbjct: 374 SSAYGLNLQEGGNHVIWFGLNWSLELYQQANKRL----HRQ-GQKEKVIVHHLVVQDTRD 428

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E V++ L TK  +Q+ LL +LK
Sbjct: 429 EDVIKALNTKGDVQEALLESLK 450


>gi|293400001|ref|ZP_06644147.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306401|gb|EFE47644.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 446

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 15/206 (7%)

Query: 1   MKQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           M  YH+F+RE    +  +  I A N+   T K LQ   GAVY DE    +E+HD K+KAL
Sbjct: 250 MVAYHRFKREKILQICEDGVITAANAGVVTNKLLQFTAGAVY-DENHEVQELHDTKLKAL 308

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPC--TIQEWNEGKIPLLFAH 115
           E ++E AN  P++V Y+F  D  R+   FP  + R ++   C   +++WN+GKI +L  H
Sbjct: 309 EDLLEAANGNPVMVFYYFKHDRDRIIDHFPDVEIRAIE---CQQDVKDWNDGKIEMLLVH 365

Query: 116 PASCGHGLNLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           PAS GHGLNLQ GGNI+++++L  W+LE + Q   R+     RQ G +  V +Y+LIA+ 
Sbjct: 366 PASVGHGLNLQQGGNIIIWYTLPNWNLELYLQANARL----HRQ-GQQNTVMIYHLIAKG 420

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T+DE +++ L  K   Q  L+ ALK+
Sbjct: 421 TVDEDMIRSLEQKDISQKTLIEALKR 446


>gi|87160506|ref|YP_494105.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87126480|gb|ABD20994.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
          Length = 423

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 246 AQNGASLSQKLLQLSNGAVYTDEEDV-RLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 304

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TLD D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 305 ERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 363

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 364 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 416


>gi|161509685|ref|YP_001575344.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294848484|ref|ZP_06789230.1| helicase [Staphylococcus aureus A9754]
 gi|160368494|gb|ABX29465.1| possible helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824510|gb|EFG40933.1| helicase [Staphylococcus aureus A9754]
 gi|320140665|gb|EFW32519.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142763|gb|EFW34566.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 455

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TLD D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|315197730|gb|EFU28064.1| possible helicase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 452

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TLD D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|291556509|emb|CBL33626.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 454

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 117/201 (58%), Gaps = 12/201 (5%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++   DL    I A N+A  + K  Q+ANGA+Y D+  +   +H++K+ ALE II
Sbjct: 256 YDEMKKQFILDLPEGEISAANAAVLSGKLSQMANGAIY-DDAGNAVSIHEQKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           E AN  P++VAY +  DL R+     ++  P  + LDK   +I+ WN G+I +   HPAS
Sbjct: 315 ESANGKPLLVAYWYQHDLERIMERLHERHIPFSK-LDK-ADSIRRWNNGEISVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGN +V+F L W LE + Q I R+     RQ   +  V V +++   TIDE
Sbjct: 373 AGHGLNLQAGGNTIVWFGLTWSLELYSQTIARL----WRQGQTEETVIVQHIVTDGTIDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            +L+ L+ K   Q  L+ A+K
Sbjct: 429 QILRALKAKDKTQSALIAAVK 449


>gi|50914495|ref|YP_060467.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|40218555|gb|AAR83209.1| phage helicase [Streptococcus pyogenes]
 gi|50261600|gb|AAT72368.1| helicase [Streptococcus pyogenes]
 gi|50903569|gb|AAT87284.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 458

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 122/206 (59%), Gaps = 11/206 (5%)

Query: 2   KQYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++Y +F++E +  +L G  + A N+AS   K +QL+NGAVY D+      +H++K+ ALE
Sbjct: 254 EKYIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAVYSDDHTV-VPLHEQKLDALE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            I+E AN  P++VAY F  DLAR    L+K     R L K    I+EWN+G +P+   HP
Sbjct: 313 DILESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVL-KTEEDIREWNKGNVPVGLIHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A  GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TI
Sbjct: 372 AGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQEAETVVIQHIVTEGTI 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           DE +L+ L  K   Q+ L+ A+K + 
Sbjct: 428 DEEILKALGNKDAQQERLIEAVKAQV 453


>gi|284024515|ref|ZP_06378913.1| SNF2-related protein [Staphylococcus aureus subsp. aureus 132]
          Length = 452

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|298693629|gb|ADI96851.1| putative DNA helicase [Staphylococcus aureus subsp. aureus ED133]
          Length = 455

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y K ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEKLEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALK 199
            + L+ K   Q+ L+ A+K
Sbjct: 430 YKALQNKELTQEELMKAIK 448


>gi|49485834|ref|YP_043055.1| hypothetical protein SAS0928 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244277|emb|CAG42704.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 455

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEE-DVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|258420304|ref|ZP_05683251.1| helicase [Staphylococcus aureus A9719]
 gi|258448843|ref|ZP_05696953.1| phage helicase [Staphylococcus aureus A6224]
 gi|257843729|gb|EEV68131.1| helicase [Staphylococcus aureus A9719]
 gi|257857880|gb|EEV80771.1| phage helicase [Staphylococcus aureus A6224]
 gi|329730625|gb|EGG67010.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 452

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|302333125|gb|ADL23318.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 452

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|209363583|ref|YP_002268001.1| phage helicase [Staphylococcus phage phi2958PVL]
 gi|208973084|dbj|BAG74400.1| phage helicase [Staphylococcus phage phi2958PVL]
          Length = 423

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 246 AQNGASLSQKLLQLSNGAVYTDEEDV-RLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 304

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 305 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 363

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 364 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 416


>gi|21283134|ref|NP_646222.1| hypothetical protein MW1405 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483700|ref|YP_040924.1| hypothetical protein SAR1523 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|148267489|ref|YP_001246432.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393543|ref|YP_001316218.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282905864|ref|ZP_06313719.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282919229|ref|ZP_06326964.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282921765|ref|ZP_06329482.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927343|ref|ZP_06334961.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|21204574|dbj|BAB95270.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49241829|emb|CAG40521.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|147740558|gb|ABQ48856.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945995|gb|ABR51931.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282317039|gb|EFB47413.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282331156|gb|EFB60670.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590667|gb|EFB95743.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594027|gb|EFB99016.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|283470735|emb|CAQ49946.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|295428024|ref|ZP_06820656.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591005|ref|ZP_06949643.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300911909|ref|ZP_07129352.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|295128382|gb|EFG58016.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575891|gb|EFH94607.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300886155|gb|EFK81357.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
          Length = 455

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|295407565|ref|ZP_06817358.1| helicase [Staphylococcus aureus A8819]
 gi|297246595|ref|ZP_06930428.1| helicase [Staphylococcus aureus A8796]
 gi|294967584|gb|EFG43620.1| helicase [Staphylococcus aureus A8819]
 gi|297176553|gb|EFH35818.1| helicase [Staphylococcus aureus A8796]
          Length = 455

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY DEE   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|70726780|ref|YP_253694.1| hypothetical protein SH1779 [Staphylococcus haemolyticus JCSC1435]
 gi|68447504|dbj|BAE05088.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 452

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQ---------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R+LY +L+            I A + AS + K LQL+NGAVY D+E   + +HD K+  
Sbjct: 252 ERKLYDELEKYYILEDETDGTIVAQSGASLSQKILQLSNGAVYTDDED-VRHIHDRKLDK 310

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE II++A   PI++ Y+F  D  R+ + F    TLD D     +WN GK  +L AHPAS
Sbjct: 311 LEEIIDEAQGQPILLFYNFKHDRDRILERFDDVLTLD-DKGYKDKWNSGKAKILLAHPAS 369

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q        +++++  NTID+
Sbjct: 370 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQGQT---HTTIIHHIMTDNTIDQ 424

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V Q L+ K   QD L+ A+K
Sbjct: 425 RVYQALQNKELTQDELMKAIK 445


>gi|296276324|ref|ZP_06858831.1| SNF2 family protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 455

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R++Y +L+            + A N AS + K LQL+NGAVY D+E   + +HD+K+  
Sbjct: 252 ERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDK 310

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 311 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 369

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 370 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 424

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 425 RVYKALQNKELTQEELMKAIK 445


>gi|256617084|ref|ZP_05473930.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|257088353|ref|ZP_05582714.1| phage-associated helicase [Enterococcus faecalis D6]
 gi|256596611|gb|EEU15787.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|256996383|gb|EEU83685.1| phage-associated helicase [Enterococcus faecalis D6]
          Length = 451

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 123/197 (62%), Gaps = 8/197 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y KF+ +L   L+  +I+A N+A  + K LQ+ANGA+Y DE      +HD+K+ ALE +
Sbjct: 255 KYDKFKADLVLQLKDADIDAANAAVLSNKLLQMANGAIY-DEFNVSHHIHDQKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN   I++AY F  DL R+++ F   +   K    I+EWN+G IP+   HPAS GHG
Sbjct: 314 IEGANGKSILIAYWFQHDLERIKERFKVRQI--KTAKDIEEWNKGNIPIGVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+     RQ G    V ++++IA++TIDE V+ 
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQ-GQNETVVIHHIIAKDTIDEDVML 426

Query: 183 RLRTKSTIQDLLLNALK 199
            L+ K   Q  L++A+K
Sbjct: 427 ALKLKDKTQASLIDAVK 443


>gi|315128428|gb|EFT84436.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329729408|gb|EGG65813.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 452

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R++Y +L+            + A N AS + K LQL+NGAVY D+E   + +HD+K+  
Sbjct: 252 ERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDK 310

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 311 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 369

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 370 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 424

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 425 RVYKALQNKELTQEELMKAIK 445


>gi|262113725|emb|CAR95392.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 458

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 11/206 (5%)

Query: 2   KQYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++Y +F++E +  +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE
Sbjct: 254 EKYIQFKKEYVLSELDGLEVTAANAASLTSKLVQLSNGAVYSDDHSV-VALHEQKLDALE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            I+E AN  P++ AY F  DLAR    L+K   + R L K    I+EWN+G + +   HP
Sbjct: 313 DILESANGEPVLGAYWFKHDLARILGRLEKLKVKSRVL-KTEEDIREWNKGNVSVGLLHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A  GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TI
Sbjct: 372 AGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQESETVIIQHIVTEGTI 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           DE +L+ L  K   Q+ L+ A+K + 
Sbjct: 428 DEEILKALENKDAQQERLIAAVKAQV 453


>gi|29028643|ref|NP_803332.1| helicase [Staphylococcus phage phi 12]
 gi|18920567|gb|AAL82307.1| phage helicase [Staphylococcus phage phi 12]
          Length = 423

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R++Y +L+            + A N AS + K LQL+NGAVY D+E   + +HD+K+  
Sbjct: 223 ERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDEDV-RLIHDKKLDK 281

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 282 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 340

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 341 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 395

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 396 RVYKALQNKELTQEELMKAIK 416


>gi|258427143|ref|ZP_05688065.1| SNF2 family protein [Staphylococcus aureus A9299]
 gi|257849921|gb|EEV73880.1| SNF2 family protein [Staphylococcus aureus A9299]
          Length = 455

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R++Y +L+            + A N AS + K LQL+NGAVY D+E   + +HD+K+  
Sbjct: 255 ERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDK 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 314 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 373 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 428 RVYKALQNKELTQEELMKAIK 448


>gi|66395664|ref|YP_240070.1| ORF008 [Staphylococcus phage 47]
 gi|88195255|ref|YP_500058.1| SNF2 family protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|258445562|ref|ZP_05693744.1| phage helicase [Staphylococcus aureus A6300]
 gi|258455568|ref|ZP_05703525.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|297207823|ref|ZP_06924257.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|62636088|gb|AAX91199.1| ORF008 [Staphylococcus phage 47]
 gi|87202813|gb|ABD30623.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|257855609|gb|EEV78542.1| phage helicase [Staphylococcus aureus A6300]
 gi|257862256|gb|EEV85027.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|296887539|gb|EFH26438.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 455

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R++Y +L+            + A N AS + K LQL+NGAVY D+E   + +HD+K+  
Sbjct: 255 ERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDK 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 314 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 373 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 428 RVYKALQNKELTQEELMKAIK 448


>gi|304406781|ref|ZP_07388436.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344314|gb|EFM10153.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 467

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 119/201 (59%), Gaps = 9/201 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K +++L   ++G  I A ++A  T K LQL NGA+Y D ++   E+HD KI+A   
Sbjct: 265 KLYDKLEKDLLLQVEGTEITATSAAVLTGKLLQLCNGALY-DGDRQVHEIHDNKIEAFME 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPAS 118
           +IE+ N    +V Y +  DLAR++ A  +     ++  T Q+   WN G++ +L AHPAS
Sbjct: 324 LIEQLNGKSALVFYSYQHDLARIKSALSKSGLRIRELSTPQDQLDWNAGEVDILLAHPAS 383

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +V+F L W LE +QQ   R+     RQ G K+ V +++L+ Q   DE
Sbjct: 384 AAYGLNLQDGGNHVVWFGLNWSLELYQQANGRL----HRQ-GQKQKVILHHLVVQGGADE 438

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V+  L  K+ +QD LL ALK
Sbjct: 439 DVMAALEGKAAMQDKLLEALK 459


>gi|257428238|ref|ZP_05604636.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257275079|gb|EEV06566.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
          Length = 455

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D+E   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|257432448|ref|ZP_05608811.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257283327|gb|EEV13459.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
          Length = 455

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D+E   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|66395597|ref|YP_239997.1| ORF009 [Staphylococcus phage 3A]
 gi|62635943|gb|AAX91054.1| ORF009 [Staphylococcus phage 3A]
          Length = 455

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D+E   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|227496460|ref|ZP_03926744.1| helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834016|gb|EEH66399.1| helicase [Actinomyces urogenitalis DSM 15434]
          Length = 457

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 116/199 (58%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + ++   L G  ++A N+A  + K LQ+A+G VY D+     EVH  KI AL  +
Sbjct: 255 HYEALREQMVLGLDGALVDAGNAAGLSNKLLQMASGCVY-DDGGAVVEVHRAKIDALADL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE A+ +P++VAY + SDL RL +A P    L +   ++++WN G IP+   HPAS GHG
Sbjct: 314 IEAASGSPVMVAYWYASDLERLLQAVPGAVEL-RSAESMRQWNAGCIPVGLIHPASAGHG 372

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+ +  W LE +QQ   R+   RQ Q      V +++LIA  TID  VL+
Sbjct: 373 LNLQAGGHHLVWLTAPWSLELYQQTNARLA--RQGQ---THPVSIHHLIAAGTIDVDVLR 427

Query: 183 RLRTKSTIQDLLLNALKKE 201
            L  K   Q  L++A++ +
Sbjct: 428 ALERKDVTQSALVDAVRAQ 446


>gi|312897717|ref|ZP_07757133.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
 gi|310621101|gb|EFQ04645.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
          Length = 463

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 125/203 (61%), Gaps = 11/203 (5%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y + +  +  +L   GE I A ++A+ + K  QLANGAVY DE ++  E+HD KI+A 
Sbjct: 254 RDYDEMETRMVLELVESGEEITAVSAAALSTKLQQLANGAVY-DELRNVHEIHDCKIEAF 312

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHP 116
           + +IE+ +  P +V Y+F  DL RL+ A  + + + K+       +EWNEGKI +L AHP
Sbjct: 313 KELIEQLSGKPALVFYNFKHDLERLKAALDKSKLIVKELKGATEEREWNEGKIDVLLAHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +GLNLQ GGN +++F L W LE +QQ  +R+     RQ G +  V +++LI+  T 
Sbjct: 373 ASTAYGLNLQDGGNHVIWFGLNWSLELYQQANKRL----HRQ-GQREKVIIHHLISIGTR 427

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           DE +++ L  K+  Q+ +L +LK
Sbjct: 428 DEDMMEALNRKADAQEYVLQSLK 450


>gi|160935260|ref|ZP_02082643.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441991|gb|EDP19688.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
          Length = 456

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 9/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + ++E   +L G+ I A ++A+   K LQLANGA Y D E +   +HD K+ AL 
Sbjct: 253 MRKYRELEKEKLLELDGKEITALSAAAVWGKLLQLANGAAY-DGEGNVIPLHDRKLDALA 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            I+E +   P++V Y+F  D  RL   F     RTL K    I++WNEG+IPLL A PAS
Sbjct: 312 EILEASGGHPVLVFYNFRHDYDRLMGRFKGYNPRTL-KSQQDIRDWNEGRIPLLLAQPAS 370

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLN+Q GG+I+V+F L   LE + Q   R+     RQ G   AV ++ LI + T+DE
Sbjct: 371 MGHGLNIQAGGHIIVWFGLNPSLELYLQANARL----HRQ-GQTEAVIIHRLITKGTVDE 425

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V+++L  K   QD L+ +LK
Sbjct: 426 DVVKKLWVKDETQDGLMESLK 446


>gi|269120031|ref|YP_003308208.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613909|gb|ACZ08277.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 458

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 13/204 (6%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y + ++E+  +L   GE I+  ++A+ T K LQL+NGAVY DE++   EVH+ KI+A 
Sbjct: 254 KAYDELEKEMILELIETGETIDVTSAAALTNKLLQLSNGAVY-DEDRKVHEVHNCKIEAF 312

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKIPLLFAH 115
             ++E  N  P +V Y F  D  R++KA  +     R L  D   + +WN  +I +L +H
Sbjct: 313 MELVEALNGQPALVFYSFQHDKDRIKKALSKLKLRVRELKTDQ-DVTDWNNREIDILLSH 371

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS  +GLNLQ GGN +++F L W LE +QQ  +R+     RQ G    VF+++LI + T
Sbjct: 372 PASSAYGLNLQRGGNHIIWFGLNWSLELYQQANKRL----HRQ-GQTEKVFIHHLITEGT 426

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
            D  V+  L  K  IQ+ LLN+LK
Sbjct: 427 RDTDVMAALGDKGDIQESLLNSLK 450


>gi|238898768|ref|YP_002924450.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466528|gb|ACQ68302.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 157

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 93/143 (65%), Gaps = 5/143 (3%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           +E +I++A   P++VAY++ SDLA ++  FP+   +     TI  WN GKIPLL AHPAS
Sbjct: 1   MEEMIQEAAGQPVLVAYNYQSDLALIKVRFPKAELIGHAADTIDRWNTGKIPLLLAHPAS 60

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGNI+V+F L W LE +QQ   R+     RQ G  R VF+++L+  ++ID 
Sbjct: 61  AGHGLNLQSGGNIIVWFGLNWSLELYQQFNARL----HRQ-GQTRPVFIHHLVMNDSIDL 115

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            VL+ L  K   Q  LL+ALKK+
Sbjct: 116 TVLEALENKHITQKALLDALKKD 138


>gi|322382458|ref|ZP_08056353.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153571|gb|EFX45960.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 10/173 (5%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           K LQ+A+GAVY DEE+  KE+H+ K+ ALE I+E +   P++V Y++   L R+Q+ FPQ
Sbjct: 283 KLLQMASGAVY-DEERGVKEIHEAKLDALEDILEASQGKPVMVFYNYKHSLQRVQQRFPQ 341

Query: 91  GRTLDKDPCTIQ---EWNEGKIPLLFAHPASCGHGLNLQYGG-NILVFFSLWWDLEEHQQ 146
            R L K    +Q   +WN  KIPLL  HP S GHGLNLQ      +++F   W LEE QQ
Sbjct: 342 ARILRKGKEGVQDITDWNTNKIPLLLLHPKSAGHGLNLQESNCQTVIWFDQIWSLEEFQQ 401

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  V RQ   G  R + V  L+A+ T+DE V++ +  K+T Q+ L+ A+K
Sbjct: 402 ANAR--VYRQ---GQTRKIVVMQLVAEGTMDEEVVEAIDKKATGQEELMQAVK 449


>gi|66395458|ref|YP_239852.1| ORF008 [Staphylococcus phage 2638A]
 gi|62635885|gb|AAX90996.1| ORF008 [Staphylococcus phage 2638A]
          Length = 452

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R+LY +L+            I A + AS + K LQL+NGAVY D+E   + +HD K+  
Sbjct: 252 ERKLYDELEKHYILESEEDGTIVAQSGASLSQKLLQLSNGAVYTDDES-VRHLHDRKLDK 310

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   P++V Y+F  D  R+ + F +  TL  D      W +GK+ +L AHPAS
Sbjct: 311 LEEIIEESQGQPLLVFYNFKHDKERIMERFDEVVTLG-DESYKDRWIKGKVKILLAHPAS 369

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ Q        +++++  NTID+
Sbjct: 370 AGHGLNLQKGGHIIVWFGLTWSLELYQQANARL--YRQGQT---HTTIIHHIMTDNTIDQ 424

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V Q L+ K   Q+ L+ A+K
Sbjct: 425 KVYQALQNKELTQEDLMQAIK 445


>gi|237738632|ref|ZP_04569113.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229424115|gb|EEO39162.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 438

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   +L+   I   N+A+ + K LQLANGA+Y DE +   EVHD KI+    
Sbjct: 227 KAYDELEKKAILELEDTEITVANAAALSNKLLQLANGAIY-DENRKVFEVHDCKIERFLE 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPAS 118
           +IE+ N  P +V Y+F  D  R+ +A    +    L K P    +WN+G+I +L AHPAS
Sbjct: 286 LIEQLNGKPALVFYNFQHDKDRIIEALKDSKLRIRLLKTPQDQLDWNKGEIDILLAHPAS 345

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W LE +QQ  +R+     RQ G    V +++L+ + T DE
Sbjct: 346 AAYGLNLQAGGNHVIWFGLNWSLELYQQANKRL----HRQ-GQTEKVIIHHLVCKETRDE 400

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V++ L+ K  +Q+ L+ +LK   + V
Sbjct: 401 DVMEALQNKGDVQEALVESLKVRIMKV 427


>gi|312438077|gb|ADQ77148.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH60]
          Length = 455

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D+E   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDDE-DVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      ++++I  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIITDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|282911093|ref|ZP_06318895.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324788|gb|EFB55098.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 455

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D+E   + +HD+K+  LE IIE++   PI++ Y+F  D 
Sbjct: 278 AQNGASLSQKLLQLSNGAVYTDDE-DVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDK 336

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 337 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 395

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      ++++I  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 396 ELYQQANARL--YRQ---GQNHTTIIHHIITDNTIDQRVYKALQNKELTQEELMKAIK 448


>gi|266623803|ref|ZP_06116738.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
 gi|288864375|gb|EFC96673.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
          Length = 457

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 9/201 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++ +RE+   L  E I   ++A+ + K LQLANGAVY DE+    EVH+ KI+A   
Sbjct: 255 KAYYEMEREMVLALPEEEISVTSAAALSNKLLQLANGAVY-DEDHSVHEVHNCKIEAFME 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPAS 118
           +IE     P +V Y+F  D AR+ KA  +     ++  T Q+   WN  KI +L  HPAS
Sbjct: 314 LIESLQGKPALVFYNFQHDRARILKALEKTGLRVRELKTTQDEDDWNARKIDILLTHPAS 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W+ E + Q  +R+     RQ G +  V +++LI   T DE
Sbjct: 374 SAYGLNLQQGGNHVIWFGLTWNYELYTQANKRL----HRQ-GQEEKVIIHHLICSGTRDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V++ L+ K  +Q  ++ +LK
Sbjct: 429 DVMEALKRKDDVQSWVMESLK 449


>gi|258646424|ref|ZP_05733893.1| SNF2 domain protein [Dialister invisus DSM 15470]
 gi|260403827|gb|EEW97374.1| SNF2 domain protein [Dialister invisus DSM 15470]
          Length = 459

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 12/203 (5%)

Query: 2   KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y++ ++++  DL  +++ +  ++A+ + K  QLANGAVY D+   W+E+H++KI+A  
Sbjct: 254 RDYNELEKKMVLDLGDDHVLDVTSAAALSNKLQQLANGAVYTDDGG-WQEIHNDKIEAFM 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWNEGKIPLLFAHP 116
            +IE+ N    IV Y+F  DL RL+ A  +     R L      + +WN GK+ +L AHP
Sbjct: 313 ELIEQLNGKHAIVFYNFRHDLDRLRAALQKTNLHIRQLQTSADEL-DWNAGKVDILLAHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +GLNLQ GGN +V+F L W LE +QQ  +R+     RQ G K  V V+ LI + T 
Sbjct: 372 ASTAYGLNLQDGGNHVVWFGLNWSLELYQQANKRL----HRQ-GQKNRVIVHQLICEGTR 426

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           DE + + L  K   Q  ++++LK
Sbjct: 427 DEDLARALLMKDAAQQYVMDSLK 449


>gi|156603990|ref|YP_001429936.1| hypothetical protein SPTP3102_gp41 [Staphylococcus phage tp310-2]
 gi|154818076|gb|ABS87503.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 455

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 120/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R+LY +L+            + A N AS + K LQL+NGAVY D+    +E+HD+K++ 
Sbjct: 255 ERKLYDELEKHYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD-GDVREIHDKKLEK 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 314 LEEIIEESQGQPILLFYNFKHDKERILERFKEATTLE-DSNYKERWNSGNIKLLIAHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 373 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQ 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 428 RVYEALQNKELTQEELMKAIK 448


>gi|283469596|emb|CAQ48807.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N AS + K LQL+NGAVY D     +E+HD+K++ LE IIE++   PI++ Y+F  D 
Sbjct: 275 AQNGASLSQKLLQLSNGAVYTDN-GDVREIHDKKLEKLEEIIEESQGQPILLFYNFKHDK 333

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W L
Sbjct: 334 ERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSL 392

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           E +QQ   R+   RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 393 ELYQQANARL--YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 445


>gi|66395514|ref|YP_239930.1| ORF006 [Staphylococcus phage 42E]
 gi|215401142|ref|YP_002332397.1| putative helicase [Staphylococcus phage phiSauS-IPLA35]
 gi|62636007|gb|AAX91118.1| ORF006 [Staphylococcus phage 42E]
 gi|215260493|gb|ACJ64623.1| gp34 [Staphylococcus phage phiSauS-IPLA35]
          Length = 455

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 119/201 (59%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R+LY +L+            + A N AS + K LQL+NGAVY D     +E+HD+K++ 
Sbjct: 255 ERKLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTDN-GDVREIHDKKLEK 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 314 LEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+   RQ   G      +++++  NTID+
Sbjct: 373 AGHGLNLQQGGHIIVWFGLTWSLELYQQANARL--YRQ---GQNHTTIMHHIMTDNTIDQ 427

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 428 RVYKALQNKELTQEELMKAIK 448


>gi|323438429|gb|EGA96184.1| phage helicase [Staphylococcus aureus O11]
          Length = 452

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 16/201 (7%)

Query: 8   QRELYCDLQGE---------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +R+LY +L+            + A N AS + K LQL+NGAVY D+    + +HD+K++ 
Sbjct: 252 ERKLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTDD-GDVRGIHDKKLEK 310

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS
Sbjct: 311 LEEIIEESQGQPILLFYNFKHDKERILERFKEATTLE-DSNYKERWNSGDIKLLIAHPAS 369

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V F L W LE +QQ   R+   RQ   G      +++L+  NTID+
Sbjct: 370 AGHGLNLQQGGHIIVSFGLTWSLELYQQANARL--YRQ---GQNHTTIIHHLMTDNTIDQ 424

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            V + L+ K   Q+ L+ A+K
Sbjct: 425 RVYKALQNKELTQEELMKAIK 445


>gi|322691254|ref|YP_004220824.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456110|dbj|BAJ66732.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 460

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  +   N+   T K  QL  G +Y D    E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTVANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIISAADG-PVLVFYQFTDELERMRARFPGMREVHEQ-GVLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+     RQ G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL----HRQ-GQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++AL+ ET  V
Sbjct: 433 KLDVLTGRMMLHEAVMDALEGETAGV 458


>gi|320458171|dbj|BAJ68792.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 460

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  + A N+   T K  QL  G +Y D    E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHEQ-GVLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+     RQ G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL----HRQ-GQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 433 KLDVLTGRMMLHEAVMDAVEGETTGI 458


>gi|213692059|ref|YP_002322645.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523520|gb|ACJ52267.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 464

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  + A N+   T K  QL  G +Y D    E   + V D K+ AL
Sbjct: 264 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 323

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 324 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHEQ-GVLEEWRNGRVPLLAAHPQAA 381

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+     RQ G KR V V+ L+  NT+D  
Sbjct: 382 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL----HRQ-GQKRTVRVHRLLESNTVDRR 436

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 437 KLDVLTGRMMLHEAVMDAVEGETTGI 462


>gi|227544270|ref|ZP_03974319.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|227185750|gb|EEI65821.1| possible helicase [Lactobacillus reuteri CF48-3A]
          Length = 224

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE ++
Sbjct: 102 YDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALEDLV 160

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL +++  F + R + K P  IQ+WN GKIPL   HPAS GHGL
Sbjct: 161 EAANGKPVLVAYWFKHDLIQIKSRF-KVREI-KTPRDIQDWNAGKIPLALIHPASAGHGL 218

Query: 124 NLQYGG 129
           NLQ GG
Sbjct: 219 NLQAGG 224


>gi|225405817|ref|ZP_03761006.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
 gi|225042657|gb|EEG52903.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
          Length = 459

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 13/205 (6%)

Query: 1   MKQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +  Y + +R++  +L  +  +I   ++A+ + K LQLANGAVY DE++   E+H  KI+A
Sbjct: 254 LNAYTELERKMILELPEDESDISVTSAAALSNKLLQLANGAVY-DEDRTVHEIHGCKIEA 312

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWNEGKIPLLFA 114
              +IE     P +V Y++  D  R+ KA        R L K P    +WN  KI +L  
Sbjct: 313 FLELIESLQGKPALVFYNYQHDRERILKALAGSKLRIRELKK-PQDEDDWNARKIDILLT 371

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           HPAS  +GLNLQ GGN +++F L W+ E + Q  +R+     RQ G    V +++L+   
Sbjct: 372 HPASSAYGLNLQQGGNHVIWFGLTWNYELYTQANKRL----HRQ-GQTEKVIIHHLVCSG 426

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T DE V+Q L+ K  +Q+ ++ +LK
Sbjct: 427 TRDEDVMQALQRKDDVQNWVMESLK 451


>gi|227872572|ref|ZP_03990908.1| helicase [Oribacterium sinus F0268]
 gi|227841573|gb|EEJ51867.1| helicase [Oribacterium sinus F0268]
          Length = 449

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 11/203 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++ +   L+   I A ++   T K  Q ANGA+Y DE+K    +HD K++   
Sbjct: 248 LKAYQELEKNMVLSLEESEITAVSAGVLTNKLSQCANGAIY-DEDKVVNHIHDCKLERFT 306

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWNEGKIPLLFAHP 116
            ++E+ N    +V Y+F  D  R+ KA  +     R   K P   ++WN+GKI +L AHP
Sbjct: 307 ELVEELNGESALVFYNFKHDKDRILKALEKSGLEVREF-KSPKDEEDWNKGKIDILLAHP 365

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +G+NLQYGG  +++FSL W  E + Q   R+   RQ   G ++ V V+ L+  +T+
Sbjct: 366 ASTAYGINLQYGGRNIIWFSLPWSYELYAQANARL--FRQ---GQEKPVIVHELLCTDTV 420

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           D  + + L  K   Q+ +L ALK
Sbjct: 421 DHDIKKSLSEKGQNQEDVLRALK 443


>gi|255994014|ref|ZP_05427149.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993682|gb|EEU03771.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
          Length = 467

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 18/207 (8%)

Query: 2   KQYHKFQRELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           + Y KF+R   C L+         ++ A  +A  + K LQLA GA+Y ++ K +  VHD 
Sbjct: 260 RAYAKFERG--CVLRYLDDTDSASSVMASTAADLSGKLLQLAGGAIYQEDSKDYVTVHDT 317

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPL 111
           K+KAL  ++E  N   II+ Y+F  + ARL  AF   +    + K    I +WN GK+ +
Sbjct: 318 KLKALTELVEPLNE-NIIIFYNFLHEKARLCNAFSDFKGEVRVFKSGKDIADWNAGKVNI 376

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L AHPA+ G+GLNLQ GG  +++F L    E++ Q  +R+     RQ G +  VFV+ L+
Sbjct: 377 LIAHPAAMGYGLNLQQGGRRIIWFGLPQSYEQYAQANKRL----HRQ-GQQDKVFVHRLV 431

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + T DE VL  L  K ++Q  LL++L
Sbjct: 432 CKGTRDEDVLSALAHKDSMQKYLLSSL 458


>gi|325662084|ref|ZP_08150703.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471747|gb|EGC74966.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 451

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 13/174 (7%)

Query: 31  KCLQLANGAVYYD--EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           K  Q+ANGA+Y D  E  H   +HD K++ALE IIE A   PI++ Y F  DL R+ +  
Sbjct: 283 KLCQMANGAIYSDSGEAVH---IHDRKLEALEDIIEAAQG-PILLCYWFKHDLERITEKL 338

Query: 89  PQGRTLDKDPCT---IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            Q +       T   I++WNEGK  +   HPAS GHGLNLQ+  N +V+F L W LE +Q
Sbjct: 339 EQLKVFYSRIVTEENIRKWNEGKYDVGLIHPASAGHGLNLQHSSNHIVWFGLTWSLELYQ 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Q   R+     RQ   +  V V +++   TIDE +L  L  K   Q  L++A+K
Sbjct: 399 QTNARLW----RQGQKQDTVVVQHIVTAGTIDEDILDALTHKDASQTRLIDAVK 448


>gi|268610658|ref|ZP_06144385.1| SNF2 domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 417

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 7/172 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y K ++E    L  +++ A N+A    K +QLA+G VY D+      +H+ K+ ALE
Sbjct: 249 IKAYRKLEKEYTLPLLHDDVSAANAAVLCGKLVQLASGCVY-DDGGTPSIIHNRKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY +  +  R++  F   R +  D   I +WN+GKIP+    P+S G
Sbjct: 308 DLLEAQNGKPVLVAYWYQHERERIKARF-DVREIKTDQ-DIADWNDGKIPVALIQPSSAG 365

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           HGLNLQ GG+ +++F++ W LE +QQ   R+     RQ      V +++L A
Sbjct: 366 HGLNLQDGGSTIIWFTMPWSLELYQQTNARL----WRQGQNADTVVIHHLTA 413


>gi|269975285|gb|ACZ55509.1| helicase [Staphylococcus phage SA1]
          Length = 491

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 105/203 (51%), Gaps = 27/203 (13%)

Query: 20  IEAFNSASKTVKCLQLANGAVY-------YDEEKHWKE-----VHDEKIKALEVIIEKAN 67
           IEA  +AS   K LQ+ +G +Y        +++K  K+     +HD K  ALE ++E   
Sbjct: 273 IEAEQAASLQSKLLQMCSGFIYDTKIVGITEDDKVIKQKDTYRLHDLKFDALEELLETTL 332

Query: 68  AAP-IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           A   +++AYHF   L RL++ F     +D D   I++WN GKI LL AHP S GHGLNLQ
Sbjct: 333 ADKNVLIAYHFKPTLERLKERFKDLVVMDDDGKCIKKWNAGKIRLLAAHPQSAGHGLNLQ 392

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ---------NTID 177
           +GG+++V+    W LE   Q   R+     RQ G K  V +Y   A           T D
Sbjct: 393 HGGHVIVYIDNPWSLERFLQFNGRL----HRQ-GQKFPVTIYQFKAMLRTPNGLLAETAD 447

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           ++V+Q L  K  +QD     L++
Sbjct: 448 DVVIQALVEKEDVQDAFFALLER 470


>gi|323441318|gb|EGA98983.1| phage helicase [Staphylococcus aureus O46]
          Length = 128

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 6/125 (4%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V+
Sbjct: 3   YNFKHDKERILERFKEATTLE-DSNYKERWNSGNIKLLIAHPASAGHGLNLQQGGHIIVW 61

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F L W LE +QQ   R+   RQ   G      +++L+  NTID+ V + L+ K   Q+ L
Sbjct: 62  FGLTWSLELYQQANARL--YRQ---GQNHTTIIHHLMTDNTIDQRVYKALQNKELTQEEL 116

Query: 195 LNALK 199
           + A+K
Sbjct: 117 MKAIK 121


>gi|260549505|ref|ZP_05823723.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
 gi|260407298|gb|EEX00773.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
          Length = 72

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 58/68 (85%)

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +FFS WWDLE++QQ+IERIG TRQ QAG+ R V++Y++IA++T+DE+V++R  +K  +QD
Sbjct: 1   MFFSHWWDLEQYQQIIERIGPTRQAQAGYDRPVYIYHIIAKDTMDEIVMERRESKREVQD 60

Query: 193 LLLNALKK 200
           LL+ A+KK
Sbjct: 61  LLMEAMKK 68


>gi|301321598|gb|ADK68988.1| Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
          Length = 735

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 28/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--------------EVHDEKIKAL 59
           D     IEA N      K LQ A GAVY D +K                 ++H  K   +
Sbjct: 512 DASAHYIEAVNGGVLRNKLLQFAAGAVYIDLDKGADGYAKATSLTSRPTLQLHSAKFDKV 571

Query: 60  EVIIEKANA----APIIVAYHFNSD----LARLQKA-FPQGRTLDKDPCTIQEWNEGKIP 110
             I ++  A      +++AY F+ +    + RL++A +   R  +  P T + WN G+IP
Sbjct: 572 IDICDQHFATGGDGSVLIAYRFDFEKTILIDRLRRAGYLGARAYNGMPDTKKAWNRGEIP 631

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++  HPAS GHGLNLQ+GG+ L++ +L    E + Q   R+      + G  + V V+ +
Sbjct: 632 VMLVHPASAGHGLNLQFGGHTLIWTTLPDSNEHYGQTPARL-----NRLGQTKPVVVHTI 686

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + +NTID  +   L  K   Q+ L+ A + E
Sbjct: 687 LTENTIDMAMPGALSDKQASQERLMQATRSE 717


>gi|12719426|ref|NP_075497.1| hypothetical protein phiSLTp35 [Staphylococcus phage phiSLT]
 gi|12697856|dbj|BAB21728.1| unnamed protein product [Staphylococcus phage phiSLT]
          Length = 116

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 6/107 (5%)

Query: 94  LDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           L+KD     + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +QQ   R+ 
Sbjct: 8   LEKDSKAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARL- 66

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 67  -YRQ---GQNHTTIIHHIMTDNTIDQKVYEALQNKELTQEELMKAIK 109


>gi|57651290|ref|YP_185255.1| hypothetical protein SACOL0363 [Staphylococcus aureus subsp. aureus
           COL]
 gi|57285476|gb|AAW37570.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
          Length = 116

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 6/107 (5%)

Query: 94  LDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           L+KD     + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +QQ   R+ 
Sbjct: 8   LEKDSKAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARL- 66

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             RQ   G      +++++  NTID+ V + L+ K   Q+ L+ A+K
Sbjct: 67  -YRQ---GQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIK 109


>gi|42766595|gb|AAS45429.1| prophage-encoded helicase [Selenomonas ruminantium]
          Length = 126

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I +WN GKIP+   HPAS GHGLNLQ GG+IL++FSL W LE +QQ   R+     RQ G
Sbjct: 25  IADWNAGKIPVALIHPASAGHGLNLQEGGSILIWFSLTWSLELYQQTNARL----YRQ-G 79

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V + ++  + TID  V++ L  K   Q  L+ A+K
Sbjct: 80  QKDTVSIIHITTEGTIDGDVMKALERKDKTQTALIEAVK 118


>gi|19552947|ref|NP_600949.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390624|ref|YP_226026.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324512|dbj|BAB99136.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325962|emb|CAF20125.1| Superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 613

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 58/237 (24%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------------------- 50
           I A ++A+  +K LQ A GAVY D E   +                              
Sbjct: 382 ISAVHAATLRMKLLQYAGGAVYVDPEDSAQSQDLDASTARDVIDATNTAMTTITSRPTMI 441

Query: 51  VHDEKI-KALEVIIEKA------------------NAAPIIVAYHFNSD----LARLQKA 87
           VH  K+ K +E++   A                     P +VAY F SD    L  L +A
Sbjct: 442 VHLHKVRKVIEILCNPALGGEPVNIDQDETGKQVYTPTPTLVAYRFISDKEILLHYLAQA 501

Query: 88  FPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             QG    D  P  +  WN G+IP+L   PAS GHGLN Q+GG+ LV+++L  + E + Q
Sbjct: 502 GVQGVEVFDGSPDMLSRWNAGRIPVLLLQPASAGHGLNFQHGGHRLVWYNLPDNNEHYMQ 561

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              R+      + G K  V ++ +I  +T D  +   L  K+  Q  L++A++++ +
Sbjct: 562 ANARL-----HRIGQKNPVTIHRIITADTYDANMPAILAGKANRQQRLIDAVRRDPV 613


>gi|71274979|ref|ZP_00651267.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71898395|ref|ZP_00680568.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
 gi|71164711|gb|EAO14425.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71731918|gb|EAO33976.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
          Length = 104

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +  DLE +QQ++ERIG TRQ QAG KR VF+++++A  T+DELV+ R  +K  +QDL
Sbjct: 23  LCPVHGDLEHYQQIVERIGPTRQAQAGHKRPVFIHHIVAAGTVDELVMARRESKREVQDL 82

Query: 194 LLNALKK 200
           LL A+K+
Sbjct: 83  LLEAVKR 89


>gi|290466810|gb|ADD25740.1| putative helicase [Lactococcus phage 1358]
          Length = 577

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 29/188 (15%)

Query: 34  QLANGAVY-------YDEEK-------HWK-----EVHDEKIKALEVIIEKANAAPIIVA 74
           QLA+GA+Y        DEE+       H K     EVHD K+ AL  IIE+     + V 
Sbjct: 346 QLASGAIYEQLDTTGLDEEEIAERYNEHMKNRKHIEVHDAKLDALADIIEREQD-NVFVF 404

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCT--IQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             +  +  R+++ F   R L+       +  WN GKIP+L A+PAS   GLN+Q GG+ +
Sbjct: 405 VSYKHEAERIRQRFEGVRFLNTANAAEVLPLWNAGKIPVLVANPASTKFGLNMQDGGHTI 464

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTI 190
           V++S+ +  E   Q   R+   RQ   G K  V VY L +      D+  L+ +    TI
Sbjct: 465 VWYSMGYSFEAFTQSNARLA--RQ---GQKHEVKVYMLQSWLAPIQDDTQLEDIMRAQTI 519

Query: 191 QDLLLNAL 198
              +++A+
Sbjct: 520 DSAIMDAI 527


>gi|256544992|ref|ZP_05472360.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
 gi|256399288|gb|EEU12897.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
          Length = 78

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 11 LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
          +   ++ ++I+A NSA+ + K LQ+A+G+VY DE+K+   +HD KI ALE +IE AN  P
Sbjct: 1  MVVSIKEKDIDAVNSAALSNKLLQMASGSVY-DEDKNMIRIHDRKIDALENLIEGANGKP 59

Query: 71 IIVAYHFNSDLARLQ 85
          + +AY + SDL R++
Sbjct: 60 VPIAYWYKSDLKRIK 74


>gi|125974159|ref|YP_001038069.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714384|gb|ABN52876.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 452

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y +  ++ Y +L    + A N  ++ ++  QL  G +  D+    ++V D K+KALE
Sbjct: 233 LKKYKELVKQSYTELSAGEVTATNILTRLLRLSQLTGGFIGSDDGGKIEQVSDAKLKALE 292

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            I+E +      ++V   F  ++  + +   +         G T D+     +   +   
Sbjct: 293 DILESSIQEGHKLVVIARFIPEIHAICRLLEKKNIGYACIYGATKDRQEQVNRFQYDPDC 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      + G K      Y
Sbjct: 353 MVFVGQIATAGLGITLT-AASTMVFYSLDYSMSNFEQTKARI-----HRVGQKNGCTYIY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA+ T+D  +L  LR K+ +  +L++  +K
Sbjct: 407 LIAKGTVDSKILTALRNKADLAKMLIDDYRK 437


>gi|223986447|ref|ZP_03636451.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
 gi|223961599|gb|EEF66107.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
          Length = 471

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 17/207 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y     E + +L    + A N  ++ ++  QL  G +  D+    ++V + K+  LE
Sbjct: 261 MKLYKNLVDESFAELSDGEVTATNVLTRLLRLNQLTGGFICSDDSSKAEQVSNAKMSVLE 320

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            I++ +      +++   F  +L  + K   +         G   ++D    Q  N+ ++
Sbjct: 321 DIVDASLQEGKKLVIIARFIPELHAICKMLGKKGIRHSLIMGGVNNRDEQVAQFQNDPEV 380

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      +AG K      Y
Sbjct: 381 SVFVGQIATAGMGITLT-AASTMVFYSLDYSMSNFEQTKARI-----HRAGQKFPCTYLY 434

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L A+ TID  VL+ L++K+++   L++
Sbjct: 435 LTAEGTIDTKVLKALKSKASLAKTLVD 461


>gi|315926199|ref|ZP_07922399.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620643|gb|EFV00624.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 478

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y+    + + +L+ + +   N  +K ++  QL  G +  DE    ++V   K+  LE
Sbjct: 268 LKLYYSLVEDSFAELEEDEVTTTNILTKLLRLSQLTGGFISGDESDVPEQVSTAKLSVLE 327

Query: 61  VIIEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            II+ A      +++   F  +L           +  +   G   +++    Q  N+  +
Sbjct: 328 DIIDSAADEGRKLVIIARFVPELHAICSLLDKKGINHSLIMGGVKNREEQISQFQNDPDV 387

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +  ++Q   RI      +AG K      +
Sbjct: 388 TVFVGQIATAGLGITLT-ASSTMVFYSLDYSMSTYEQTKARI-----HRAGQKYPCTYIH 441

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA  T+D+ VL+ LR+K+ +   L++  ++
Sbjct: 442 LIADGTVDQKVLRALRSKANLAKTLVDDYRR 472


>gi|325270384|ref|ZP_08136989.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987328|gb|EGC19306.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1326

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 21/207 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D  + WK +   K+ A  
Sbjct: 1107 MAMYEVRRRETEEKVRANAADKVSTLAEITRLRQMACSCSLVD--RKWK-LPSSKVLAFI 1163

Query: 61   VIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRT--LDKDPCT--------IQEWNEGK 108
             + E  N +    +V   F S L  +++A  + R   L  D  T        +Q++  G+
Sbjct: 1164 DLAESLNDSGNRALVFSQFTSFLDEVRRAMDKARLPYLYLDGSTPMAQREKLVQDFQTGR 1223

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+       IE+    R  + G K+ V VY
Sbjct: 1224 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWN-----PAIEQQATDRAYRIGQKQEVTVY 1277

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +LI+Q+TI+E +L+  RTK  + D LL
Sbjct: 1278 HLISQHTIEEKILRLHRTKRNLSDSLL 1304


>gi|309702945|emb|CBJ02276.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 286

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 36/43 (83%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE 44
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+
Sbjct: 241 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDD 283


>gi|307580244|gb|ADN64213.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 330

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 2/53 (3%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVH 52
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VH
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVH 309


>gi|302345308|ref|YP_003813661.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
 gi|302150135|gb|ADK96397.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
          Length = 1343

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+  GK P       + G GLNL  G N +V    WW+       IE+    R  + G
Sbjct: 1233 VKEFQTGKCPFFLISLKAGGLGLNLT-GANYVVHLDPWWN-----PAIEQQATDRAYRIG 1286

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ V VY+LI+Q+TI+E +L+  +TK  + D LL
Sbjct: 1287 QQQDVTVYHLISQHTIEEKILRLHKTKRNLSDSLL 1321


>gi|325853079|ref|ZP_08171228.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
 gi|325484453|gb|EGC87374.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
          Length = 1302

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++  GK P       + G GLNL  G N ++    WW+       IE+    R  + G
Sbjct: 1192 VKDFQTGKCPFFLISLKAGGLGLNLT-GANYVIHLDPWWN-----PAIEQQATDRAYRIG 1245

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             K+ V VY+LI+Q+TI+E +L+  +TK  + D LL
Sbjct: 1246 QKQNVTVYHLISQHTIEEKILRLHKTKRNLSDSLL 1280


>gi|288802766|ref|ZP_06408204.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
 gi|288334916|gb|EFC73353.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
          Length = 1343

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    +     +  ++ ++     Q+A      D  K WK +   K+ A  
Sbjct: 1124 MAMYEVKRRETEAKILENKADKVSTLAEITHLRQMACSCSLVD--KRWK-LPSSKVLAFI 1180

Query: 61   VIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRT----LD-KDPCT-----IQEWNEGK 108
             + E  N +    +V   F S    ++KA    +     LD   P +     ++E+  GK
Sbjct: 1181 DLAESLNDSGNRALVFSQFTSFFEEIKKAMETAKLPYLYLDGSTPMSMREKLVKEFQSGK 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+       IE+    R  + G K+ V VY
Sbjct: 1241 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWN-----PAIEQQATDRAYRIGQKQDVTVY 1294

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI+Q+TI+E +L+  +TK  + D LL
Sbjct: 1295 RLISQHTIEEKILRLHKTKRNLSDSLL 1321


>gi|327313991|ref|YP_004329428.1| SNF2 family N-terminal domain-containing protein [Prevotella
            denticola F0289]
 gi|326946179|gb|AEA22064.1| SNF2 family N-terminal domain protein [Prevotella denticola F0289]
          Length = 1340

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++  GK P       + G GLNL  G N ++    WW+       IE+    R  + G
Sbjct: 1230 VKDFQTGKCPFFLISLKAGGLGLNLT-GANYVIHLDPWWN-----PAIEQQATDRAYRIG 1283

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             K+ V VY+LI+Q+TI+E +L+  +TK  + D LL
Sbjct: 1284 QKQNVTVYHLISQHTIEEKILRLHKTKRNLSDSLL 1318


>gi|303238092|ref|ZP_07324632.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302481727|gb|EFL44782.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 1337

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 23/187 (12%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFN 78
            + ++ ++  +  QLA      D  K W+ V  +    I   E + +  N A  +V   F 
Sbjct: 1140 SVSTLAEITRLRQLACSTALVD--KKWEGVSSKTLAFIDLAESLNDSGNRA--LVFSQFT 1195

Query: 79   SDLARLQKAFPQ---------GRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S  A ++K   +         G T + K    ++E+ EG  P       + G GLNL  G
Sbjct: 1196 SYFAEIKKMMDKTHLPYLYLDGSTPMKKREQLVREFQEGDCPFFLISLKAGGLGLNLT-G 1254

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N ++    WW+       IE+    R  + G ++ V VY LIAQ+TI+E +L+  +TK 
Sbjct: 1255 ANYVIHLDPWWN-----PAIEQQATDRAYRIGQEQDVTVYRLIAQHTIEEKILRLHKTKR 1309

Query: 189  TIQDLLL 195
             + D LL
Sbjct: 1310 DLADSLL 1316


>gi|66392086|ref|YP_239310.1| possible DNA helicase [Xanthomonas phage Xp15]
 gi|62529196|gb|AAX84879.1| possible DNA helicase [Xanthomonas phage Xp15]
          Length = 587

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 20/205 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K + +L  + +   I A N+A K +K LQ+A+GAV  DE +  K     +  AL  
Sbjct: 382 KMYEKMKSDLLVEYEAGEITAVNAAVKAMKLLQIASGAVKDDEGRIVKVDASTREDALWE 441

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR-----TLDKD-PCT-----IQEWNEGKIP 110
           I E      +++   F + +  L   F Q R     T++ D P       +Q++ +  + 
Sbjct: 442 IFEGTGETKLVIFAAFRATIDHLVGYF-QDRNVKVATINGDVPHALRAKHVQDFQDSDLQ 500

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L   P S  HG+ L     I V++SL    E + Q   RI      +AG  R   +Y+L
Sbjct: 501 VLIIQPQSSAHGITLTASCTI-VWYSLVPSGEIYVQANGRI-----TRAGQSRKQTIYHL 554

Query: 171 IAQNTIDELVLQRLRTK-STIQDLL 194
           I     +  VL  L  K ST Q+LL
Sbjct: 555 IGCRP-ERHVLDILEGKVSTSQNLL 578


>gi|323340857|ref|ZP_08081108.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
 gi|323091708|gb|EFZ34329.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
          Length = 975

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC-TIQEWNEGKIPLLFAHPASCG 120
           IIV   F S L+ L+K   Q         G T  ++    ++E+N+  +P+      + G
Sbjct: 828 IIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFNQNDVPIFLISLKAGG 887

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL  G ++++ +  WW+     Q        R  + G  + V VY LI ++TI+E +
Sbjct: 888 TGLNL-VGADVIIHYDPWWNEAAQNQ-----ATDRAHRIGQTKNVLVYKLIVKDTIEEKI 941

Query: 181 LQRLRTKSTIQDLLLNA 197
           L+    KS + D +L+ 
Sbjct: 942 LKMQEQKSKLADDILSG 958


>gi|160944098|ref|ZP_02091328.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444774|gb|EDP21778.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
          Length = 562

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + +R  + +L  G++I A    +K ++ +QL  G    D+    ++V+  K+ ALE
Sbjct: 353 KLYEQLRRSSFAELDSGDSITATTVLTKMLRLMQLTGGFTQTDDGTRPQQVNTAKLDALE 412

Query: 61  VIIEK---ANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT--------IQEW 104
            I++       + +++   F +++A ++     K  P G      P           Q+ 
Sbjct: 413 DILDDYVLETGSKLVIFARFRAEIAAIENALRKKGIPYGSIYGDVPQAERGKIVDDFQQN 472

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E K+    A   + G G+ L +  ++ VF+S+ ++   + Q + RI      + G    
Sbjct: 473 PEAKV--FVAQIQTAGLGITL-HAASMAVFYSIDYNYANYAQALARI-----HRIGQHNP 524

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V   +L+ +++ID+ VL  L  K  I   ++++
Sbjct: 525 VTYIHLLVEDSIDDKVLAALENKEDIAKSIVDS 557


>gi|283795073|ref|ZP_06344226.1| Snf2 family protein [Clostridium sp. M62/1]
 gi|291077403|gb|EFE14767.1| Snf2 family protein [Clostridium sp. M62/1]
          Length = 254

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++N G +P+      + G GLNL    +I++ F  WW+L    Q        R  + G 
Sbjct: 146 EQFNSGDVPVFLISLKAGGTGLNL-TAASIVIHFDPWWNLAAQNQ-----ATDRAHRIGQ 199

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++ V V+ LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 200 EKQVTVFKLIAQNTIEEKIIKLQQEKQKLSSQILDG 235


>gi|295092105|emb|CBK78212.1| Superfamily II DNA/RNA helicases, SNF2 family [Clostridium cf.
            saccharolyticum K10]
          Length = 1085

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +++N G +P+      + G GLNL    +I++ F  WW+L    Q  +R       + G 
Sbjct: 977  EQFNSGDVPVFLISLKAGGTGLNLT-AASIVIHFDPWWNLAAQNQATDRA-----HRIGQ 1030

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V V+ LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 1031 EKQVTVFKLIAQNTIEEKIIKLQQEKQKLSSQILDG 1066


>gi|255038325|ref|YP_003088946.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254951081|gb|ACT95781.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 982

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 39/219 (17%)

Query: 12  YCDLQGENIEAFNSASKTVKCL-------------------------QLANGAVYYDEE- 45
           YCD+ GE  +A+  A    + L                         QLAN  V  D E 
Sbjct: 752 YCDMSGEQEKAYEEAKAYYRNLILQSIDSEGMSKSQLVVLQGLTRLRQLANHPVMVDPEY 811

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDP 98
            H     ++ +  L+ ++ + +   I   Y  + DL R       +  A+  G T D+  
Sbjct: 812 AHDSGKFEDVLYKLQTVMSEDHKILIFSQYIKHLDLFRHYLDEKEINYAYLDGATRDRQE 871

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+  I +      + G GLNL     + +    WW+       IE   V R  +
Sbjct: 872 QVESFQNDENIKIFLISLKAGGLGLNLTAADYVFIL-DPWWN-----PAIEAQAVDRAHR 925

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R VF Y  I +N+++E +L   R+K  + D L+++
Sbjct: 926 IGQDRTVFTYKFITKNSVEEKILALQRSKKQLADDLISS 964


>gi|282880921|ref|ZP_06289612.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
 gi|281305144|gb|EFA97213.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
          Length = 1254

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 21/185 (11%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
             ++ S+  K  Q+A      D  K WK+    K+     + E  N      +V   F S 
Sbjct: 1058 LSTLSEITKLRQMACSISLVD--KTWKKT-SSKLSTFIALAESLNDSGGRALVFSQFTSF 1114

Query: 81   LARLQKAFPQ---------GRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            LA +++   +         G T + K    + E+ +G  P       + G GLNL    N
Sbjct: 1115 LAEVRQVMDKIKLPYLYLDGATPIKKREEIVDEFQKGNYPFFLISLKAGGLGLNLT-AAN 1173

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++    WW+       IE+    R  + G +  V VY+LIAQ+TI+E +++  +TK  +
Sbjct: 1174 YVIHLDPWWN-----PAIEQQATDRAYRIGQRNDVTVYHLIAQHTIEEKIIRLHKTKRDL 1228

Query: 191  QDLLL 195
             D LL
Sbjct: 1229 ADSLL 1233


>gi|295103966|emb|CBL01510.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1098

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 21/184 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +        S++K   CL+L   AV      H   +  +    LE++ ++ + 
Sbjct: 910  REICCDPRLVADNWTGSSAKLEACLELVTEAV---AGGHRILLFSQFTSMLELLAKRLDE 966

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A +    HF      LQ + P+    ++    ++ +N+G+  +      + G GLNL   
Sbjct: 967  AGV---SHFT-----LQGSTPKPVRAEQ----VRRFNQGEADVFLISLRAGGTGLNLT-A 1013

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW+L    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1014 ADIVIHYDPWWNLAAQNQATDRA-----YRIGQRNPVQVYRLIAQDTIEEKIVELQQAKQ 1068

Query: 189  TIQD 192
            ++ D
Sbjct: 1069 SLAD 1072


>gi|160942559|ref|ZP_02089806.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
 gi|158446143|gb|EDP23146.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1098

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 21/184 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +        S++K   CL+L   AV      H   +  +    LE++ ++ + 
Sbjct: 910  REICCDPRLVADNWTGSSAKLDACLELVTEAV---AGGHRILLFSQFTSMLELLAKRLDE 966

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A +    HF      LQ + P+    ++    ++ +N+G+  +      + G GLNL   
Sbjct: 967  AGV---SHFT-----LQGSTPKPVRAEQ----VRRFNQGEADVFLISLRAGGTGLNLT-A 1013

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW+L    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1014 ADIVIHYDPWWNLAAQNQATDRA-----YRIGQRNPVQVYRLIAQDTIEEKIVELQQAKQ 1068

Query: 189  TIQD 192
            ++ D
Sbjct: 1069 SLAD 1072


>gi|168335382|ref|ZP_02693475.1| Non-specific serine/threonine protein kinase [Epulopiscium sp. 'N.t.
            morphotype B']
          Length = 1031

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+NEG + +      + G GLNL    +I++ +  WW+L    Q        R  + G
Sbjct: 923  VEEFNEGDMQVFLISLKAGGVGLNLT-AADIVIHYDPWWNLSAQNQ-----ATDRAYRMG 976

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K  V V+ LIA+NTI+E + Q   +K+ + + +L+
Sbjct: 977  QKNTVQVFKLIAKNTIEEKIKQLQDSKALLSESILS 1012


>gi|291520743|emb|CBK79036.1| Superfamily II DNA/RNA helicases, SNF2 family [Coprococcus catus
            GD/7]
          Length = 1096

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NE  IP+      + G GLNL  G +I++ +  WW+     Q  +R       + G
Sbjct: 988  VNAFNENAIPVFLISLKAGGTGLNLT-GADIVIHYDPWWNAAAQNQATDR-----AHRIG 1041

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                V VY LIA++TI+E +L+    K  + D +L+
Sbjct: 1042 QTHTVTVYKLIARHTIEEKILELQENKKALSDQILS 1077


>gi|300743764|ref|ZP_07072784.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
 gi|300380125|gb|EFJ76688.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
          Length = 1318

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            P  ++++ EG  P+      + G GLNL    +  +    WW+    QQ ++RI      
Sbjct: 1203 PQVLKDFAEGTAPVFLISLKAGGFGLNLTEADHCFIM-DPWWNPAAEQQAVDRI-----H 1256

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +R V VY L+A+ TI+E V+    +K+ + D ++N
Sbjct: 1257 RLGQERDVHVYRLVAEGTIEEKVMDLKASKAALFDAVVN 1295


>gi|311113008|ref|YP_003984230.1| hypothetical protein HMPREF0733_11339 [Rothia dentocariosa ATCC
            17931]
 gi|310944502|gb|ADP40796.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 1319

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            P  ++++ EG  P+      + G GLNL    +  +    WW+    QQ ++RI      
Sbjct: 1204 PQVLKDFAEGAAPVFLISLKAGGFGLNLTEADHCFIM-DPWWNPAAEQQAVDRI-----H 1257

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +R V VY L+A+ TI+E V+    +K+ + D ++N
Sbjct: 1258 RLGQERDVHVYRLVAEGTIEEKVMDLKASKAALFDAVVN 1296


>gi|295102130|emb|CBK99675.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii L2-6]
          Length = 1109

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 25/186 (13%)

Query: 9    RELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            RE+ CD  L  +N E    ++K   C +L + AV   E  H   +  +    LE++ ++ 
Sbjct: 920  REICCDPRLIADNWEG--GSAKLDACAELVSSAV---EGGHRILLFSQFTSMLELLAKRL 974

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            +A  I    HF      LQ + P+    +     ++ +N G++ +      + G GLNL 
Sbjct: 975  DAEGI---SHFT-----LQGSTPKPVRAE----LVRRFNGGEVSVFLISLRAGGTGLNLT 1022

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +I++ +  WW++    Q  +R       + G +  V VY LIAQ+TI+E +++  + 
Sbjct: 1023 -AADIVIHYDPWWNVAAQNQATDRA-----YRIGQQNPVQVYKLIAQDTIEEKIVELQQA 1076

Query: 187  KSTIQD 192
            K ++ D
Sbjct: 1077 KQSLAD 1082


>gi|238917469|ref|YP_002930986.1| hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
 gi|238872829|gb|ACR72539.1| Hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
          Length = 69

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 37 NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
          NGA+Y D  +   E HD K+ ALE IIE +N  P++VAY F  DL+R+++ F
Sbjct: 14 NGAIYSDTGE-IIEFHDRKLDALEDIIESSNGKPVLVAYWFKHDLSRIKERF 64


>gi|331218680|ref|XP_003322017.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309301007|gb|EFP77598.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1764

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W N  +I +      + G G+NL    + ++F+   W+    QQ ++R       + 
Sbjct: 1486 VMDWQNRPEIFIFLLSTRAGGLGINLT-AADTVIFYDCDWNPSNDQQAMDR-----AHRL 1539

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G KR V VY LI   TIDE +L+  RTK T+QD ++ +
Sbjct: 1540 GQKRQVTVYRLITTGTIDERILKLARTKKTVQDAVVGS 1577


>gi|288958707|ref|YP_003449048.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
 gi|288911015|dbj|BAI72504.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
          Length = 1160

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            GRTLD+    +  +   ++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 1039 GRTLDR-ALPVNRFQNREVPVFLISLKAGGRGLNLT-AADTVIHYDPWWNPAAEDQATDR 1096

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  + VFVY LIA NT++E +L   R K ++
Sbjct: 1097 -----AYRIGQDKPVFVYKLIAANTVEERILDLQRRKGSL 1131


>gi|167630922|ref|YP_001681421.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
 gi|167593662|gb|ABZ85410.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
          Length = 449

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y    R+ Y +L    + A N  ++ ++  Q+  G +   E    + V   K +ALE
Sbjct: 233 MKIYRDLVRDSYAELGKGEVTATNILTRLLRLSQITGGFIGGGEGGPVQRVSTAKEEALE 292

Query: 61  VIIE---KANAAPIIVAY---HFNSDLARLQK-----AFPQGRTLDKDPCTIQEWNEGKI 109
            IIE   ++    +I+A      N+    L+K     +   G   D++       N  ++
Sbjct: 293 DIIEDVLQSGKKLVIIARFIPEINAICRLLEKKGIRYSLLMGGVKDREEQVSAFQNGPEV 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      + G K      Y
Sbjct: 353 QVFVGQIATAGLGVTLT-AASTMVFYSLDYSMSNFEQARARI-----HRVGQKENCTYLY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L A+ T+DE VL+ LR K+ +  +L++
Sbjct: 407 LTAKGTVDEKVLKALRDKADLARMLVD 433


>gi|321253974|ref|XP_003192917.1| DNA repair protein [Cryptococcus gattii WM276]
 gi|317459386|gb|ADV21130.1| DNA repair protein, putative [Cryptococcus gattii WM276]
          Length = 993

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GG+ L+ F   W+     Q + RI      + G KR V++Y L+  N IDE 
Sbjct: 686 GVGLNL-IGGSRLILFDSDWNPSTDLQAMARI-----HRDGQKRPVYIYRLLTTNAIDEK 739

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR  TK+ + D +++
Sbjct: 740 IYQRQITKTGLSDQMMD 756


>gi|227364978|ref|ZP_03849019.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|325681709|ref|ZP_08161229.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
 gi|227069989|gb|EEI08371.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|324979021|gb|EGC15968.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
          Length = 292

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 19/156 (12%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQ 102
           KIKA   +I  E A+   I++   F S LA L++            +G+T  +D    + 
Sbjct: 125 KIKATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVD 184

Query: 103 EWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N    P +F     + G GLNL    ++++ F  WW++    Q  +R       + G 
Sbjct: 185 EFNSYDQPAVFLISLKAGGTGLNL-TSADVVIHFDPWWNIAAENQATDRA-----HRIGQ 238

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K  V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 239 KNNVTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 274


>gi|58265682|ref|XP_569997.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226229|gb|AAW42690.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 993

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GG+ L+ F   W+     Q + RI      + G KR V++Y  +  N IDE 
Sbjct: 686 GVGLNL-IGGSRLILFDSDWNPSTDLQAMARI-----HRDGQKRPVYIYRFLTTNAIDEK 739

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           + QR  TK+ + D +++  + E
Sbjct: 740 IYQRQITKTGLSDQMMDQTRTE 761


>gi|328856768|gb|EGG05888.1| hypothetical protein MELLADRAFT_36442 [Melampsora larici-populina
           98AG31]
          Length = 878

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W    +I +      + G G+NL    + ++F+   W+    QQ ++R       + 
Sbjct: 718 VMDWQTRPEIFIFLLSTRAGGLGINLT-AADTVIFYDCDWNPSNDQQAMDR-----AHRL 771

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G KR V VY LI   TIDE +L+  RTK T+QD ++ +
Sbjct: 772 GQKRQVTVYRLITSGTIDERILKLARTKKTVQDAVVGS 809


>gi|148544262|ref|YP_001271632.1| helicase domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|148531296|gb|ABQ83295.1| helicase domain protein [Lactobacillus reuteri DSM 20016]
          Length = 291

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 19/156 (12%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQ 102
           KIKA   +I  E A+   I++   F S LA L++            +G+T  +D    + 
Sbjct: 124 KIKATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVD 183

Query: 103 EWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N    P +F     + G GLNL    ++++ F  WW++    Q  +R       + G 
Sbjct: 184 EFNSYDQPAVFLISLKAGGTGLNL-TSADVVIHFDPWWNIAAENQATDRA-----HRIGQ 237

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K  V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 238 KNNVTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 273


>gi|134109445|ref|XP_776837.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259517|gb|EAL22190.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1045

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GG+ L+ F   W+     Q + RI      + G KR V++Y  +  N IDE 
Sbjct: 738 GVGLNL-IGGSRLILFDSDWNPSTDLQAMARI-----HRDGQKRPVYIYRFLTTNAIDEK 791

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           + QR  TK+ + D +++  + E
Sbjct: 792 IYQRQITKTGLSDQMMDQTRTE 813


>gi|237747228|ref|ZP_04577708.1| helicase [Oxalobacter formigenes HOxBLS]
 gi|229378579|gb|EEO28670.1| helicase [Oxalobacter formigenes HOxBLS]
          Length = 1126

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 16/144 (11%)

Query: 71   IIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I+V   F S L+ ++K         A   G T D+    I+ + +GK+P+      + G 
Sbjct: 970  ILVFSQFTSMLSLIEKELNSRRIPYALLTGDTADR-ASAIRHFQDGKVPVFLISLKAGGV 1028

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T++E + 
Sbjct: 1029 GLNLT-AADTVIHYDPWWN-----PAVENQATDRAWRIGQDKPVFVYKLIAKGTLEEQIQ 1082

Query: 182  QRLRTKSTIQDLLLNALKKETIHV 205
            +  + K+ + + +L++ + + + +
Sbjct: 1083 ELQQRKADLANAMLSSGQAQHVQI 1106


>gi|88857230|ref|ZP_01131873.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
 gi|88820427|gb|EAR30239.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
          Length = 1060

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 71   IIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +I+   F S L+ +++         A   G+T D+    +  + +G   +      + G 
Sbjct: 914  VIIFSQFTSMLSLIEQQLQALNLGYAILTGQTRDRQ-SAVDSFQQGDKSIFLISLKAGGT 972

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    + ++ F  WW+    QQ  +R       + G K+ VFVY LI Q+TI+E V 
Sbjct: 973  GLNLT-AADTVIHFDPWWNPAVEQQATDRA-----YRIGQKKPVFVYKLICQDTIEERVY 1026

Query: 182  QRLRTKSTIQDLLLNALKKE 201
            +  + K+ + +   +A  K+
Sbjct: 1027 EMQQNKAALAESFFDAASKQ 1046


>gi|331019536|gb|EGH99592.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 918

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|330967945|gb|EGH68205.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 918

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|213967360|ref|ZP_03395508.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|302058432|ref|ZP_07249973.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131163|ref|ZP_07257153.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927661|gb|EEB61208.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 918

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|28869303|ref|NP_791922.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852544|gb|AAO55617.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 918

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|283458684|ref|YP_003363319.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
 gi|283134734|dbj|BAI65499.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1388

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 53   DEKIKALEVIIEKANAAPIIVAY--HFNSDLARLQKA-----FPQGRTLDKDPCTIQEWN 105
            D  ++ L  ++EK +   +   +  +  S  ARL K      +  G T ++    I+ + 
Sbjct: 1221 DYLVQQLPDLLEKGHRVLVFSQFTGYLKSISARLAKEGIGHLYLDGSTRNRAE-VIEAFT 1279

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+ P+      + G GLNL    ++ +    WW+    QQ ++RI      + G  + V
Sbjct: 1280 SGQEPVFLISLKAGGFGLNLTEADHVFIM-DPWWNPAAEQQAVDRI-----HRIGQDKEV 1333

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VY L+A+ TI+E V+Q   +K+ + D ++
Sbjct: 1334 HVYRLVAEGTIEEKVMQLKESKAALFDAVV 1363


>gi|330961339|gb|EGH61599.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 885

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 695 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 754

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 755 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 813 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 849


>gi|330878594|gb|EGH12743.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 918

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|301381674|ref|ZP_07230092.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato Max13]
          Length = 918

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V +D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|330982693|gb|EGH80796.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 280

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    I++   F S L+ +++   Q         G T D+    I ++  GK+P+     
Sbjct: 118 AEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISL 176

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+     Q  +     R  + G  + VFVY +IA+ T+
Sbjct: 177 KAGGTGLNL-TAADTVIHYDPWWNPAAENQATD-----RAYRIGQDKPVFVYKMIARGTV 230

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E + +  R KS +   +L+ 
Sbjct: 231 EEKIQRLQREKSALASGVLDG 251


>gi|194466323|ref|ZP_03072310.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
 gi|194453359|gb|EDX42256.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
          Length = 1162

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 19/156 (12%)

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQ 102
            KIKA   +I  E A+   I++   F S LA L++            +G+T   D    + 
Sbjct: 995  KIKATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVD 1054

Query: 103  EWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+N    P +F     + G GLNL    ++++ F  WW++    Q  +R       + G 
Sbjct: 1055 EFNSYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQ 1108

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K  V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1109 KNNVTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1144


>gi|107100261|ref|ZP_01364179.1| hypothetical protein PaerPA_01001285 [Pseudomonas aeruginosa PACS2]
          Length = 773

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 616 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 674

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 675 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 728

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 729 EEKIQHLQQEKAALADGLFS 748


>gi|296390849|ref|ZP_06880324.1| helicase [Pseudomonas aeruginosa PAb1]
          Length = 773

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 616 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 674

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 675 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 728

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 729 EEKIQHLQQEKAALADGLFS 748


>gi|313105624|ref|ZP_07791890.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310878392|gb|EFQ36986.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 773

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 616 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 674

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 675 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 728

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 729 EEKIQHLQQEKAALADGLFS 748


>gi|227545238|ref|ZP_03975287.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300909872|ref|ZP_07127333.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
 gi|227184771|gb|EEI64842.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300893737|gb|EFK87096.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
          Length = 1161

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 19/156 (12%)

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQ 102
            KIKA   +I  E A+   I++   F S LA L++            +G+T   D    + 
Sbjct: 994  KIKATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVD 1053

Query: 103  EWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+N    P +F     + G GLNL    ++++ F  WW++    Q  +R       + G 
Sbjct: 1054 EFNSYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K  V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1108 KNNVTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1143


>gi|125974243|ref|YP_001038153.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714468|gb|ABN52960.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 375

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 26/206 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    + GE +    + +K +   QL +    Y+  KH         + L+ 
Sbjct: 192 KEYKKFKKDRVITIDGETLAGDTALTKLLYLRQLTS---IYNSNKH---------QVLKD 239

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK-AFPQGRTL---DKDPCTIQEWNEGKIPLLFAHPA 117
           I E +N    ++ Y+F  +   ++   F   R +   + D   ++ +      +      
Sbjct: 240 IFESSNDR-FVIFYNFKREFEIIKNICFKIDRPISYINGDGTDLENYENKSNSITLVQYQ 298

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G+NLQ   N +++FSL    E   Q  +RI      + G  R  F YYLI +N+I+
Sbjct: 299 AGASGVNLQ-KANRIIYFSLPLSSEFWMQSKKRI-----HRIGQNRTCFYYYLITENSIE 352

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L+ L+ +   +D  +   +KE +
Sbjct: 353 EKILEVLKQR---RDFTVELFEKEML 375


>gi|254245052|ref|ZP_04938374.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
 gi|126198430|gb|EAZ62493.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
          Length = 663

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 506 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 564

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 565 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 618

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 619 EEKIQHLQQEKAALADGLFS 638


>gi|254239157|ref|ZP_04932480.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
 gi|126171088|gb|EAZ56599.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
          Length = 663

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 506 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 564

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 565 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 618

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 619 EEKIQHLQQEKAALADGLFS 638


>gi|116048717|ref|YP_792483.1| helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583938|gb|ABJ09953.1| probable helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 663

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 506 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 564

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 565 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 618

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 619 EEKIQHLQQEKAALADGLFS 638


>gi|15595996|ref|NP_249490.1| helicase [Pseudomonas aeruginosa PAO1]
 gi|218893257|ref|YP_002442126.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|9946691|gb|AAG04188.1|AE004515_4 probable helicase [Pseudomonas aeruginosa PAO1]
 gi|218773485|emb|CAW29297.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 663

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  GK+P+     
Sbjct: 506 AEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISL 564

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 565 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 618

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 619 EEKIQHLQQEKAALADGLFS 638


>gi|300854652|ref|YP_003779636.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434767|gb|ADK14534.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1088

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+NEG+IP+      + G GLNL    +I++ +  WW+       +E     R  + G
Sbjct: 977  VREFNEGQIPIFLISLKAGGTGLNLT-SADIVIHYDPWWN-----PAVENQASDRAHRIG 1030

Query: 161  FKRAVFVYYLIAQNTIDELV 180
             K+ V V  LIA+ TI+E +
Sbjct: 1031 QKKTVEVIRLIAKGTIEEKI 1050


>gi|330954490|gb|EGH54750.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae Cit
           7]
          Length = 914

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 885


>gi|66045135|ref|YP_234976.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255842|gb|AAY36938.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
          Length = 914

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 885


>gi|170693768|ref|ZP_02884925.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
 gi|170141186|gb|EDT09357.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
          Length = 1162

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +Q + +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1045 VQRFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1098

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1099 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1134


>gi|193712533|ref|XP_001943954.1| PREDICTED: putative DNA helicase Ino80-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1335

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1078 NRSDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1131

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETI 203
              V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+
Sbjct: 1132 --VTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTL 1172


>gi|330889124|gb|EGH21785.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 914

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 885


>gi|325478692|gb|EGC81803.1| hypothetical protein HMPREF9290_0083 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 66

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +HD K+ ALE +IE AN  P+++AY + S L R++  F   R    +    +EWN G IP
Sbjct: 4   IHDIKLDALEDLIEGANGKPVLIAYWYKSYLRRIKDKF-DVREFKTNE-DFKEWNRGNIP 61

Query: 111 LLFAH 115
           +   H
Sbjct: 62  VAITH 66


>gi|227015822|gb|ACP17919.1| putative non-specific serine/threonine protein kinase [Pseudomonas
            nitroreducens]
          Length = 1093

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 18/150 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
            H  K+ AL  ++++  A    +++   F S LA +Q          A   G T D+    
Sbjct: 921  HSGKLSALLEMLDELLAEGRRVLLFSQFTSMLALIQAQLQARNIPYALLTGETRDRRQ-P 979

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++ +G++PL      + G GLNL    + ++ +  WW+    QQ  +R       + G
Sbjct: 980  VDDFQQGRVPLFLISLKAGGTGLNLT-TADTVIHYDPWWNPAVEQQATDR-----AYRIG 1033

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + VFVY LIA+ T++E + Q    K+ +
Sbjct: 1034 QDKPVFVYKLIARGTLEEKIQQLQARKAAL 1063


>gi|330897626|gb|EGH29045.1| SNF2-related:helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 559

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V  D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 369 VNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 428

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 429 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 486

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G  + VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 487 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 530


>gi|330973232|gb|EGH73298.1| SNF2-related:helicase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 880

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 705 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 763

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 764 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 817

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 818 PVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 851


>gi|255524582|ref|ZP_05391536.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296185768|ref|ZP_06854175.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255511735|gb|EET88021.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296049596|gb|EFG89023.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 929

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++E+NEG+IP+      + G GLNL    +I++ +  WW+       +E     R  + G
Sbjct: 818 VREFNEGEIPIFLISLKAGGTGLNLT-SADIVIHYDPWWN-----PAVENQASDRAHRIG 871

Query: 161 FKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLL 194
            K+ V V  LIA+ TI+E + + + + K  I D++
Sbjct: 872 QKKTVEVIRLIAKGTIEEKIHKIQEKKKEIINDVI 906


>gi|302184809|ref|ZP_07261482.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 880

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 705 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 763

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 764 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 817

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 818 PVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 851


>gi|158320324|ref|YP_001512831.1| helicase domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158140523|gb|ABW18835.1| helicase domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 419

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +  ++ Y  L+   + A N  +K ++  QL  G +  D+    K++   K+ AL+ 
Sbjct: 211 KLYKRILKDSYVQLEKGEVTAQNLLTKLLRLSQLTGGFIGADD-GTIKQISKAKLDALKE 269

Query: 62  IIEKANAA-----------PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           IIE    A           P I A     D   +  ++  G   D+     +   E  + 
Sbjct: 270 IIEDMKDAGKKLVVFARFLPEINAIKNMLDEMEISYSYITGEVKDRGEEVRKFQEEDGVR 329

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +  A   + G G+ L +  + +VF+SL ++   + Q   RI      + G K      +L
Sbjct: 330 VFIAQIQTAGLGITL-HAADTVVFYSLDFNYANYSQARARI-----HRIGQKNTCTYIHL 383

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           IA  T+DE +L+ L  K  I
Sbjct: 384 IAPGTVDEKILKALEKKENI 403


>gi|328718561|ref|XP_003246514.1| PREDICTED: putative DNA helicase Ino80-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1314

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1078 NRSDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1131

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETI 203
              V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+
Sbjct: 1132 --VTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTL 1172


>gi|237797684|ref|ZP_04586145.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020534|gb|EGI00591.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 918

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V  D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 728 VNQDMPANSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 787

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 788 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 845

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 846 DRA-----YRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 882


>gi|198283188|ref|YP_002219509.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218667367|ref|YP_002425417.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|198247709|gb|ACH83302.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218519580|gb|ACK80166.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
          Length = 1113

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    I  +  G++PL      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 989  GSTQDRK-TPIDRFQRGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 1046

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                   + G KR VFVY LI   +I+E +L     K+ +   +L   +KE +
Sbjct: 1047 -----AHRIGQKRQVFVYKLIVAGSIEEKILALQEKKAILAAGVLEKTQKEKL 1094


>gi|108885078|ref|NP_072678.2| SNF2 family helicase putative [Mycoplasma genitalium G37]
 gi|94730430|sp|P47264|Y018_MYCGE RecName: Full=Uncharacterized ATP-dependent helicase MG018
 gi|84626126|gb|AAC71234.2| helicase SNF2 family, putative [Mycoplasma genitalium G37]
 gi|166078676|gb|ABY79294.1| helicase SNF2 family, putative [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 1031

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            F   +T+      IQ++N  K P ++ A   + G G+NL     +++ F +WW+     
Sbjct: 908 VFDGRKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLT-AAEVVIHFDVWWN----- 961

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +E     R  + G  + V VY +IA+NTI+E V Q
Sbjct: 962 SAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQ 998


>gi|315650529|ref|ZP_07903595.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
 gi|315487184|gb|EFU77500.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
          Length = 1142

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            DK    + ++N     +      + G GLNL  G +I++ +  WW+     Q  +R    
Sbjct: 1027 DKRLTLVNKFNHDDTNVFLISLKAGGTGLNLT-GADIVIHYDPWWNFAAQNQATDR---- 1081

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K  V VY LIA+ TI+E +++   +K  + D +LN
Sbjct: 1082 -AHRIGQKNTVTVYRLIAKGTIEERIVKLQESKKDLADRVLN 1122


>gi|315303447|ref|ZP_07874044.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
 gi|313628192|gb|EFR96728.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
          Length = 1072

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   LA +++   + G+T      K P       +  +NEG+  +   
Sbjct: 910  RENGKRILIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPSRTRLDMVNSFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|295699426|ref|YP_003607319.1| SNF2-related protein [Burkholderia sp. CCGE1002]
 gi|295438639|gb|ADG17808.1| SNF2-related protein [Burkholderia sp. CCGE1002]
          Length = 1172

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A +  A   G T D+    ++ + +G++PL      + G GLNL    + ++ +  WW
Sbjct: 1035 DEAAIPYAMLTGDTTDR-VTPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWW 1092

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +     Q  +R       + G  + VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1093 NPAAENQATDR-----AHRLGQDKPVFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1143


>gi|255327378|ref|ZP_05368452.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255295658|gb|EET75001.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 1384

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+ +  G+ P+      + G GLNL    ++ +    WW+    QQ ++RI      + G
Sbjct: 1271 IEAFTSGQEPVFLISLKAGGFGLNLTEADHVFIM-DPWWNPAAEQQAVDRI-----HRIG 1324

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + V VY L+A+ TI+E V+Q   +K+ + D ++
Sbjct: 1325 QDKEVHVYRLVAEGTIEEKVMQLKESKAALFDAVV 1359


>gi|209521910|ref|ZP_03270580.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
 gi|209497652|gb|EDZ97837.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
          Length = 1162

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A +  A   G T D+    ++ + +G++PL      + G GLNL    + ++ +  WW
Sbjct: 1025 DEAAIPYAMLTGDTTDR-VTPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWW 1082

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +     Q  +R       + G  + VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1083 NPAAENQATDR-----AHRLGQDKPVFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1133


>gi|315282593|ref|ZP_07870972.1| SNF2 family helicase [Listeria marthii FSL S4-120]
 gi|313613760|gb|EFR87525.1| SNF2 family helicase [Listeria marthii FSL S4-120]
          Length = 1072

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L+ + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILIFSQFTGMLSIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|307727814|ref|YP_003911027.1| SNF2-related protein [Burkholderia sp. CCGE1003]
 gi|307588339|gb|ADN61736.1| SNF2-related protein [Burkholderia sp. CCGE1003]
          Length = 1227

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +Q + +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1110 VQRFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1163

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1164 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1199


>gi|156405034|ref|XP_001640537.1| predicted protein [Nematostella vectensis]
 gi|156227672|gb|EDO48474.1| predicted protein [Nematostella vectensis]
          Length = 1429

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY L+ +NTI+
Sbjct: 1066 GLGINLTAADTVIFYDSDWNPTVDEQAMDRAHRLGQTKQ--------VTVYRLVTKNTIE 1117

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1118 ERILQRAREKSEIQKMVISG 1137


>gi|330881511|gb|EGH15660.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 337

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    I++   F S L+ +++   Q         G T D+    I ++  GK+P+     
Sbjct: 175 AEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISL 233

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+     Q  +     R  + G  + VFVY +IA+ T+
Sbjct: 234 KAGGTGLNLT-AADTVIHYDPWWNPAAENQATD-----RAYRIGQDKPVFVYKMIARGTV 287

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E + +  R KS +   +L+ 
Sbjct: 288 EEKIQRLQREKSALAAGVLDG 308


>gi|71019185|ref|XP_759823.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
 gi|46099621|gb|EAK84854.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
          Length = 1060

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G N LV     W+     Q + RI      + G K+  ++Y L+   T+D
Sbjct: 762 SGGVGLNL-IGANRLVLIDSDWNPSTDLQAMARI-----HRDGQKKPCYIYRLLLSGTMD 815

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E + QR  +K  + D L+NA KK T
Sbjct: 816 EKIYQRQISKLGLSDSLMNAEKKTT 840


>gi|114777053|ref|ZP_01452073.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
 gi|114552574|gb|EAU55034.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
          Length = 1095

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T D++   ++ +  G++PL      + G GLNL    + ++ +  WW+       +E 
Sbjct: 975  GQTRDRE-TPVERFQNGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWN-----PAVEA 1027

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                R  + G  +AVFVY L+ + T++E +L+    K  + D
Sbjct: 1028 QATDRAHRIGQDKAVFVYKLLTEGTVEERILEMQDRKRELAD 1069


>gi|298486414|ref|ZP_07004475.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159042|gb|EFI00102.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 914

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTI 190
            VFVY +IA+ T++E + +  R KS +
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSAL 878


>gi|289624075|ref|ZP_06457029.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869863|gb|EGH04572.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 914

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTI 190
            VFVY +IA+ T++E + +  R KS +
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSAL 878


>gi|289434930|ref|YP_003464802.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171174|emb|CBH27716.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1071

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   +++   F   LA +++   + G+T      K P       +  +NEG+  +   
Sbjct: 910  RENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E + +  + K  + D L+
Sbjct: 1024 TIEERIFELQKKKQALVDELI 1044


>gi|289648568|ref|ZP_06479911.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 914

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTI 190
            VFVY +IA+ T++E + +  R KS +
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSAL 878


>gi|330944324|gb|EGH46382.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           V  D   + K+    K+ +L  + E+  A    I++   F S L+ +++   Q       
Sbjct: 309 VNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYAL 368

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T D+    I ++  GK+P+      + G GLNL    + ++ +  WW+     Q  
Sbjct: 369 LTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQAT 426

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +     R  + G  + VFVY +IA+ T++E + +  R KS +
Sbjct: 427 D-----RAYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSAL 463


>gi|320329151|gb|EFW85148.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 914

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|323530052|ref|YP_004232204.1| SNF2-like protein [Burkholderia sp. CCGE1001]
 gi|323387054|gb|ADX59144.1| SNF2-related protein [Burkholderia sp. CCGE1001]
          Length = 1175

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  GK+PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1058 VERFQHGKVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1111

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1112 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1147


>gi|320324786|gb|EFW80858.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330986243|gb|EGH84346.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013173|gb|EGH93229.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 914

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTI 190
            VFVY +IA+ T++E + +  R KS +
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSAL 878


>gi|71733698|ref|YP_274080.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554251|gb|AAZ33462.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 914

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+ +L  + E+  A    I++   F S L+ +++   Q         G T D+    I +
Sbjct: 739 KLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRR-TPIHD 797

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK+P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 798 FQSGKLPIFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAENQATDRA-----YRIGQDK 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTI 190
            VFVY +IA+ T++E + +  R KS +
Sbjct: 852 PVFVYKMIARGTVEEKIQRLQREKSAL 878


>gi|301633331|gb|ADK86885.1| SNF2 family N-terminal domain protein [Mycoplasma pneumoniae FH]
          Length = 1030

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 101  IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+++N  K P +L A   + G G+NL     +++ F +WW+       +E     R  + 
Sbjct: 921  IEKFNNAKNPCVLLASLKAGGVGINLT-AAEVVIHFDVWWN-----TAVENQATDRAHRI 974

Query: 160  GFKRAVFVYYLIAQNTIDELVL------QRLRTKSTIQDL 193
            G K+ V VY +IA+NTI+E V       Q L +K+ ++D+
Sbjct: 975  GQKKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDV 1014


>gi|13507759|ref|NP_109708.1| helicases [Mycoplasma pneumoniae M129]
 gi|2493354|sp|P75093|Y020_MYCPN RecName: Full=Uncharacterized ATP-dependent helicase MPN_020
 gi|1673793|gb|AAB95782.1| helicase-like protein [Mycoplasma pneumoniae M129]
          Length = 1030

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 101  IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+++N  K P +L A   + G G+NL     +++ F +WW+       +E     R  + 
Sbjct: 921  IEKFNNAKNPCVLLASLKAGGVGINLT-AAEVVIHFDVWWN-----TAVENQATDRAHRI 974

Query: 160  GFKRAVFVYYLIAQNTIDELVL------QRLRTKSTIQDL 193
            G K+ V VY +IA+NTI+E V       Q L +K+ ++D+
Sbjct: 975  GQKKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDV 1014


>gi|313623518|gb|EFR93710.1| SNF2 family helicase [Listeria innocua FSL J1-023]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
           + N   I++   F   LA +++   + G++L     K P       +  +NEG+  +   
Sbjct: 488 RENGKRILIFSQFTGMLAIIRRKLEEDGQSLFYMDGKTPAKTRLDMVNAFNEGENDIFLI 547

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 548 SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 601

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           TI+E +    + K  + D L+
Sbjct: 602 TIEERIFDLQKKKQALVDELI 622


>gi|77361962|ref|YP_341536.1| helicase domain-containing protein [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76876873|emb|CAI89090.1| putative protein with helicase domain [Pseudoalteromonas haloplanktis
            TAC125]
          Length = 1351

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++  G+ PL      + G GLNL    + ++    WW+       +E+    R  + G
Sbjct: 1242 VDKFQAGEAPLFLISLKAGGTGLNLT-AADYVLHLDPWWN-----PAVEQQASDRAHRLG 1295

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V VY LIAQNTI+E +LQ    K  + D +L+ 
Sbjct: 1296 QTRPVTVYRLIAQNTIEEKILQLHEHKQALADKVLSG 1332


>gi|71008587|ref|XP_758230.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
 gi|46097848|gb|EAK83081.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
          Length = 870

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T++K    +  +N  EGK  +      + G GLNL  G N LV F   W+    QQ + R
Sbjct: 680 TINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPASDQQALAR 738

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +      + G K++ FVY  IA  +I+E +LQR   K ++   +++  +    H
Sbjct: 739 VW-----RDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCVVDEAQDAARH 787


>gi|91793580|ref|YP_563231.1| SNF2-related [Shewanella denitrificans OS217]
 gi|91715582|gb|ABE55508.1| SNF2-related [Shewanella denitrificans OS217]
          Length = 1088

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG+ P+      + G GLNL     + + F  WW+        ER    R  + G
Sbjct: 980  IDDFQEGRKPVFLISLKAGGTGLNLTTADTV-IHFDPWWN-----PAAERQATDRAHRIG 1033

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                VFVY LIAQ T++E + +  + K  + D +L+
Sbjct: 1034 QLNPVFVYKLIAQGTVEEKIHEMQQHKQGLADSILS 1069


>gi|257069450|ref|YP_003155705.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
 gi|256560268|gb|ACU86115.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
          Length = 1110

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 79   SDLAR--LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            S+L R  ++ A   G T D+D   +  + EG  P+      + G GL L     + +   
Sbjct: 979  SELERREVRYAHLDGSTRDRD-AAVAGFREGDAPVFLISLKAGGFGLTLTEADYVFLL-D 1036

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+     Q ++R       + G  R V VY +IA++TI+E VL   R K+ + D L +
Sbjct: 1037 PWWNPAAENQAVDR-----AHRIGQDRTVMVYRMIAEDTIEEKVLALQRRKAELFDALTD 1091

Query: 197  A 197
             
Sbjct: 1092 G 1092


>gi|160874619|ref|YP_001553935.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|160860141|gb|ABX48675.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|315266860|gb|ADT93713.1| SNF2-related protein [Shewanella baltica OS678]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + VFVY LIA+ T++E + +  + K ++ D +L    K T
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|163791108|ref|ZP_02185528.1| Snf2 family protein [Carnobacterium sp. AT7]
 gi|159873664|gb|EDP67748.1| Snf2 family protein [Carnobacterium sp. AT7]
          Length = 1075

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC-TIQEWNEGKIPLLFA 114
            + N   I++   F S LA ++K   Q         G+T  K+    +  +N G+  +   
Sbjct: 915  RENGRRILIFSQFTSMLAIIEKELAQQSVETFYLSGQTKPKERIEMVNRFNAGEKEVFLI 974

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G ++++ + LWW+       +E     R  + G K+ V V  LIA+ 
Sbjct: 975  SLKAGGTGLNLT-GADMVILYDLWWN-----PAVEEQAAGRAHRIGQKKVVQVLRLIAEG 1028

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            TI+E + Q  + K  + D ++ 
Sbjct: 1029 TIEEKIDQLQQEKKALFDQIIT 1050


>gi|125543874|gb|EAY90013.1| hypothetical protein OsI_11583 [Oryza sativa Indica Group]
          Length = 1411

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       + G  + 
Sbjct: 1157 NRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDRT-----HRLGQTKE 1210

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1211 VTVYRLICKDTIEEKILQRAKQKNAVQELVM 1241


>gi|108708155|gb|ABF95950.1| transcriptional activator, putative, expressed [Oryza sativa Japonica
            Group]
          Length = 1457

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       + G  + 
Sbjct: 1203 NRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDRT-----HRLGQTKE 1256

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1257 VTVYRLICKDTIEEKILQRAKQKNAVQELVM 1287


>gi|16803684|ref|NP_465169.1| hypothetical protein lmo1644 [Listeria monocytogenes EGD-e]
 gi|16411080|emb|CAC99722.1| lmo1644 [Listeria monocytogenes EGD-e]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E + +  + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFELQKKKQALVDELI 1044


>gi|284802036|ref|YP_003413901.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284995178|ref|YP_003416946.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
 gi|284057598|gb|ADB68539.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284060645|gb|ADB71584.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E + +  + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFELQKKKQALVDELI 1044


>gi|313112827|ref|ZP_07798474.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624897|gb|EFQ08205.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1100

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 28/187 (14%)

Query: 9    RELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            RE+ CD  L  +N +    ++K   C++L   AV   E  H   +  +    LE++ ++ 
Sbjct: 913  REICCDPRLVADNWDG--GSAKLDACMELVTAAV---EGGHRILLFSQFTSMLELLAKRL 967

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            + A +    HF      LQ + P+    +     ++ +N G+  +      + G GLNL 
Sbjct: 968  DEAGV---SHFT-----LQGSTPKPVRAE----LVRRFNSGEADVFLISLRAGGTGLNLT 1015

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +I++ +  WW++    Q  +R     QR       V VY LIAQ+TI+E +++  + 
Sbjct: 1016 -AADIVIHYDPWWNVAAQNQATDRAYRIGQRNP-----VQVYKLIAQDTIEEKIVELQQA 1069

Query: 187  KSTIQDL 193
            K   QDL
Sbjct: 1070 K---QDL 1073


>gi|152999998|ref|YP_001365679.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
 gi|151364616|gb|ABS07616.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + VFVY LIA+ T++E + +  + K ++ D +L    K T
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|47096999|ref|ZP_00234573.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|254898188|ref|ZP_05258112.1| hypothetical protein LmonJ_00195 [Listeria monocytogenes J0161]
 gi|254912319|ref|ZP_05262331.1| helicase [Listeria monocytogenes J2818]
 gi|254936646|ref|ZP_05268343.1| helicase [Listeria monocytogenes F6900]
 gi|47014621|gb|EAL05580.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|258609243|gb|EEW21851.1| helicase [Listeria monocytogenes F6900]
 gi|293590301|gb|EFF98635.1| helicase [Listeria monocytogenes J2818]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E + +  + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFELQKKKQALVDELI 1044


>gi|302671400|ref|YP_003831360.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
 gi|302395873|gb|ADL34778.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
          Length = 1034

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  + E   P+      + G GLNL    +I++ +  WW++      +E     R  + G
Sbjct: 926  VDAFQEDDTPVFCISLKAGGTGLNLT-AADIVIHYDHWWNI-----AVENQATDRAHRIG 979

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K  V VY LI QNTI+E ++     K  + D LLN 
Sbjct: 980  QKNVVTVYRLIMQNTIEERIILLQNKKKELADQLLNT 1016


>gi|254832046|ref|ZP_05236701.1| hypothetical protein Lmon1_11855 [Listeria monocytogenes 10403S]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E + +  + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFELQKKKQALVDELI 1044


>gi|116873076|ref|YP_849857.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|116741954|emb|CAK21078.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   LA +++   + G +L     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILIFSQFTGMLAIIRRKLEEEGHSLFYMDGKTPAKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|304409583|ref|ZP_07391203.1| SNF2-related protein [Shewanella baltica OS183]
 gi|307303941|ref|ZP_07583694.1| SNF2-related protein [Shewanella baltica BA175]
 gi|304352101|gb|EFM16499.1| SNF2-related protein [Shewanella baltica OS183]
 gi|306912839|gb|EFN43262.1| SNF2-related protein [Shewanella baltica BA175]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + VFVY LIA+ T++E + +  + K ++ D +L    K T
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|217974039|ref|YP_002358790.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
 gi|217499174|gb|ACK47367.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + VFVY LIA+ T++E + +  + K ++ D +L    K T
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|126173709|ref|YP_001049858.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS155]
 gi|125996914|gb|ABN60989.1| SNF2-related protein [Shewanella baltica OS155]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + VFVY LIA+ T++E + +  + K ++ D +L    K T
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|229828003|ref|ZP_04454072.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
 gi|229792597|gb|EEP28711.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
          Length = 1314

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N+ + P+      + G GLNL  G ++++ +  WW+L    Q  +R       + G
Sbjct: 1206 VHAFNDDETPVFLISLKAGGTGLNLT-GADLVIHYDPWWNLAAQNQATDRA-----HRIG 1259

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V V+ LIA+ TI++ +L+    K  + D +L+ 
Sbjct: 1260 QTKDVSVFRLIAKGTIEDRILEMQEKKKDLADAILSG 1296


>gi|125586260|gb|EAZ26924.1| hypothetical protein OsJ_10853 [Oryza sativa Japonica Group]
          Length = 1396

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       + G  + 
Sbjct: 1203 NRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDRT-----HRLGQTKE 1256

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1257 VTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 1289


>gi|242040921|ref|XP_002467855.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
 gi|241921709|gb|EER94853.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
          Length = 1478

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+ + W+  + QQ ++R       + G  + V VY LI ++TI+E 
Sbjct: 1232 GLGINLT-AADTVIFYEIDWNPTQDQQAMDRT-----HRLGQTKEVTVYRLICKDTIEEK 1285

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +LQR + K+ +Q+L++  
Sbjct: 1286 ILQRAKQKNAVQELVMKG 1303


>gi|313632979|gb|EFR99905.1| DNA/RNA helicase protein [Listeria seeligeri FSL N1-067]
          Length = 1071

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   +++   F   LA +++   + G+T      K P       +  +NEG+  +   
Sbjct: 910  RENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|310827837|ref|YP_003960194.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
 gi|308739571|gb|ADO37231.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
          Length = 1029

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NE   P+      + G GLNL  G ++++ +  WW+L    Q  +R       + G
Sbjct: 921  VNAFNEDDTPVFLISLKAGGTGLNLT-GADVVIHYDPWWNLSAQNQATDR-----AHRIG 974

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +V VY LIA+++I+E + +  + K+ + D ++
Sbjct: 975  QTNSVQVYNLIAKDSIEEKIQKMQQAKAELADSII 1009


>gi|330808509|ref|YP_004352971.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
 gi|327376617|gb|AEA67967.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1096

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    ++E+  GK+ L      + G GLNL    + ++ F  WW+       +E 
Sbjct: 974  GSTTDRR-TPVREFQSGKVSLFLISLKAGGTGLNLT-AADTVIHFDPWWN-----PAVEN 1026

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  + VFVY LIA+ T++E +      K+ +   LL+ 
Sbjct: 1027 QATDRAYRIGQNKPVFVYKLIARGTVEEKIQALQEDKAALAGSLLDG 1073


>gi|242280237|ref|YP_002992366.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
 gi|242123131|gb|ACS80827.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
          Length = 1069

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y
Sbjct: 969  IPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRIGQKRQVFAY 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
             +I QNT++E +L     K ++ D ++   +ALK  T
Sbjct: 1023 KMICQNTVEEKILGLQEMKKSVADAIIPGQSALKSLT 1059


>gi|222528088|ref|YP_002571970.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222454935|gb|ACM59197.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1112

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N G+  +      + G GLNL  G ++++ + LWW+       +E   + R  + G
Sbjct: 1003 VNKFNSGQKQVFLVSLKAGGFGLNLT-GADVVILYDLWWN-----PAVENQAMDRAHRIG 1056

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + +V V+ LI +NTI+E + +  + K  + D ++++
Sbjct: 1057 QENSVQVFRLITRNTIEERIFELQQKKKDLFDSIVSS 1093


>gi|297203431|ref|ZP_06920828.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
 gi|297148407|gb|EFH28976.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
          Length = 297

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G IP+L     + G GLNL   G++ V F  WW+    +Q  +     R  + G
Sbjct: 184 VDRFQSGAIPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWNPAVEEQATD-----RAYRIG 237

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L +K  + D +L +
Sbjct: 238 QTQPVQVHRLITEGTVEDRIAEMLESKRALADAILGS 274


>gi|254829448|ref|ZP_05234135.1| helicase [Listeria monocytogenes FSL N3-165]
 gi|258601864|gb|EEW15189.1| helicase [Listeria monocytogenes FSL N3-165]
          Length = 1072

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L  + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|313637601|gb|EFS03000.1| DNA/RNA helicase protein [Listeria seeligeri FSL S4-171]
          Length = 512

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
           + N   +++   F   LA +++   + G+T      K P       +  +NEG+  +   
Sbjct: 351 RENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIFLI 410

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 411 SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 464

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           TI+E + +  + K  + D L+
Sbjct: 465 TIEERIFELQKKKQALVDELI 485


>gi|47093680|ref|ZP_00231434.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|47017941|gb|EAL08720.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|328465005|gb|EGF36284.1| SNF2 family helicase [Listeria monocytogenes 1816]
          Length = 1072

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L  + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|226224245|ref|YP_002758352.1| SNF2-type helicase [Listeria monocytogenes Clip81459]
 gi|225876707|emb|CAS05416.1| Putative SNF2-type helicase [Listeria monocytogenes serotype 4b str.
            CLIP 80459]
          Length = 1072

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L  + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|91778444|ref|YP_553652.1| putative helicase [Burkholderia xenovorans LB400]
 gi|91691104|gb|ABE34302.1| Putative helicase [Burkholderia xenovorans LB400]
          Length = 1150

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ + +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1033 VERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1086

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1087 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1122


>gi|46907873|ref|YP_014262.1| SNF2 family helicase [Listeria monocytogenes str. 4b F2365]
 gi|254931583|ref|ZP_05264942.1| helicase [Listeria monocytogenes HPB2262]
 gi|46881142|gb|AAT04439.1| helicase, Snf2 family [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583138|gb|EFF95170.1| helicase [Listeria monocytogenes HPB2262]
          Length = 1072

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L  + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|16800753|ref|NP_471021.1| hypothetical protein lin1685 [Listeria innocua Clip11262]
 gi|16414172|emb|CAC96916.1| lin1685 [Listeria innocua Clip11262]
          Length = 1072

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   LA +++   + G+ L     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +    + K  + D L+
Sbjct: 1024 TIEERIFDLQKKKQALVDELI 1044


>gi|296159842|ref|ZP_06842663.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295889825|gb|EFG69622.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1150

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ + +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1033 VERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1086

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1087 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1122


>gi|156101331|ref|XP_001616359.1| helicase [Plasmodium vivax SaI-1]
 gi|148805233|gb|EDL46632.1| helicase, putative [Plasmodium vivax]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIERIGVTRQRQAGF 161
           N+  + +      +CG GLNL    N +VF  L+W    + + +    RIG T +     
Sbjct: 680 NDDHVKIALLSLTACGIGLNLT-AANTVVFGELYWVPGQIIQAEDRAHRIGTTHE----- 733

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V ++YLIAQNTIDE+V + +  K       LN ++
Sbjct: 734 --VVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGME 769


>gi|325110937|ref|YP_004272005.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
 gi|324971205|gb|ADY61983.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
          Length = 1120

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 72   IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            IV  H   D A +   +  G T D+D       N+  IP+      + G GLNL    + 
Sbjct: 985  IVKNHL--DKANIPYVYLDGSTKDRDAVVQTFQNDKDIPVFLISLKAGGLGLNLT-AADY 1041

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+       +E   + R  + G  R V  Y LIA+ TI+E + +  + K  + 
Sbjct: 1042 VFLLDPWWN-----PAVEAQAIDRAHRVGQTRNVIAYRLIARGTIEEKIAELQQNKRKLA 1096

Query: 192  DLLLN 196
            D +L+
Sbjct: 1097 DAILS 1101


>gi|261854732|ref|YP_003262015.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
 gi|261835201|gb|ACX94968.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
          Length = 1086

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 22/139 (15%)

Query: 71   IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I+V   F S LA + +A  +         G T D++   ++++  G  P+      + G 
Sbjct: 935  ILVFSQFTSMLALISEALTKAKLAHSMLTGETRDRE-TVVRQFQNGDTPVFLISLKAGGV 993

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GLNL    + ++ +  WW+     Q  +R   IG TRQ        VFVY L+ + +I+E
Sbjct: 994  GLNLT-AADTVIHYDPWWNPAAEDQATDRAHRIGQTRQ--------VFVYKLVTEGSIEE 1044

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +L     K+ + + +L+ 
Sbjct: 1045 KILALQDKKAKLAEGVLSG 1063


>gi|270208570|ref|YP_003329341.1| putative helicase [Sinorhizobium meliloti]
 gi|76880844|gb|ABA56014.1| putative helicase [Sinorhizobium meliloti]
          Length = 1126

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 17/132 (12%)

Query: 57   KALEVIIEKANAA-PIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
            + +E++ E A+    +IV   F S         D A +  A   G T+D+    ++ +  
Sbjct: 965  RLMELVGELADEGRKVIVFSQFTSMLDLIRRRLDDADIAYALLTGDTVDRG-TQVESFQH 1023

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G +P+      + G GLNL    + ++ +  WW+    +Q I+R       + G  + VF
Sbjct: 1024 GTMPVFLISLKAGGVGLNLT-AADTVILYDPWWNPAVEEQAIDR-----AHRIGQDKPVF 1077

Query: 167  VYYLIAQNTIDE 178
            VY L+A +TI+E
Sbjct: 1078 VYRLVAADTIEE 1089


>gi|303388827|ref|XP_003072647.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
 gi|303301788|gb|ADM11287.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
          Length = 1257

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 28/186 (15%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKALEVIIEKANA-- 68
             DL+   I+  N   K  + L LA   +      H+K+  +   K+KALE II       
Sbjct: 1046 VDLEYGKIDQKNVGFKRTRDLLLAVSHM-----SHFKDSSEVSCKVKALEDIISLCGGED 1100

Query: 69   --APIIVAYHFNSDLARLQK------AFPQGRTLDKDPCTI-----QEWNEGKIPLLFAH 115
              + I++ + F S +  + K       F   R     P +      +E+N G   +LF  
Sbjct: 1101 LRSKILIFFQFKSSIDFVIKDIMEKYKFKYSRLDGSVPSSTRAKIAEEFNTGTTQILFLT 1160

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL     ++++   W    + Q M       R  + G KR V V+ LIA+NT
Sbjct: 1161 TQVGGLGLNLTGADTVVMYEHDWNPFNDLQAM------DRAHRIGQKRTVNVFRLIAKNT 1214

Query: 176  IDELVL 181
            ++E V+
Sbjct: 1215 LEEKVM 1220


>gi|167519292|ref|XP_001743986.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777948|gb|EDQ91564.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1542

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFF 135
            + D  RL+      R   KD C   ++N+   P  L      +   GLN+ YGGN ++ F
Sbjct: 1063 DQDFFRLEGETSSARR--KDMC--DQFNQPDEPCRLFLVSIRAGATGLNM-YGGNRVILF 1117

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + W+     Q I R       + G ++ V+VY L+A  TI+E +L R   K TI
Sbjct: 1118 DVSWNPATDNQAISRC-----HRYGQQKTVYVYRLVAAGTIEEHILSRQINKMTI 1167


>gi|254824296|ref|ZP_05229297.1| helicase [Listeria monocytogenes FSL J1-194]
 gi|255520940|ref|ZP_05388177.1| hypothetical protein LmonocFSL_06916 [Listeria monocytogenes FSL
            J1-175]
 gi|293593530|gb|EFG01291.1| helicase [Listeria monocytogenes FSL J1-194]
          Length = 1072

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E +    + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFDLQKKKQALVDELI 1044


>gi|217964204|ref|YP_002349882.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|217333474|gb|ACK39268.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|307571229|emb|CAR84408.1| helicase, Snf2 family [Listeria monocytogenes L99]
          Length = 1072

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E +    + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFDLQKKKQALVDELI 1044


>gi|328957397|ref|YP_004374783.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
 gi|328673721|gb|AEB29767.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
          Length = 1075

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC-TIQ 102
            K++ L+  I+ A  N   I++   F S LA ++K   +         G+T  K+    + 
Sbjct: 903  KLEQLKETIQTARENGRRILIFSQFTSMLAIIEKELDEQEVETFYLSGQTKPKERIEMVN 962

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N G+  +      + G GLNL  G ++++ + LWW+       +E     R  + G K
Sbjct: 963  KFNAGEKDVFLISLKAGGTGLNLT-GADMVILYDLWWN-----PAVEEQAAGRAHRIGQK 1016

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V V  LIA+ TI+E + Q  + K  + D ++ 
Sbjct: 1017 KVVQVLRLIAEGTIEEKIDQLQQEKKALFDQIIT 1050


>gi|254852266|ref|ZP_05241614.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300766136|ref|ZP_07076102.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
 gi|258605574|gb|EEW18182.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300513159|gb|EFK40240.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
          Length = 1072

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 956  VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 1009

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ +I + TI+E +    + K  + D L+
Sbjct: 1010 QKRVVQVFRMITKGTIEERIFDLQKKKQALVDELI 1044


>gi|158292419|ref|XP_313902.4| AGAP005035-PA [Anopheles gambiae str. PEST]
 gi|157016983|gb|EAA09385.4| AGAP005035-PA [Anopheles gambiae str. PEST]
          Length = 1608

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1190 NRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1243

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR R KS IQ +++N 
Sbjct: 1244 --VTVYRLICKGTIEERILQRAREKSEIQRMVING 1276


>gi|187919690|ref|YP_001888721.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
 gi|187718128|gb|ACD19351.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
          Length = 1155

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ + +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G
Sbjct: 1038 VERFQKGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLG 1091

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1092 QDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1127


>gi|254497098|ref|ZP_05109919.1| DNA helicase [Legionella drancourtii LLAP12]
 gi|254353678|gb|EET12392.1| DNA helicase [Legionella drancourtii LLAP12]
          Length = 1091

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              ++++ EGK P+      + G GLNL     + + +  WW+       +E     R  +
Sbjct: 978  AMVEKFQEGKTPVFLISLKAGGTGLNLTRADTV-IHYDPWWN-----PAVEDQATDRTHR 1031

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G +  VFVY LI   T++E +L     K  + D +L+A
Sbjct: 1032 IGQENPVFVYKLITAGTVEEAILGMQERKRQLVDGILSA 1070


>gi|168042770|ref|XP_001773860.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162674847|gb|EDQ61350.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1566

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N+  GKI +L A   +CG G+ L  G + +VF  + W+       + R  + R  +
Sbjct: 1366 IERFNDRKGKIRVLLASTKACGEGITLT-GASRVVFMDVLWN-----PAVIRQAIHRAFR 1419

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             G + AV VY L+A  T++E   QR+ +K
Sbjct: 1420 IGQRNAVHVYRLVASGTMEESKYQRMVSK 1448


>gi|240170156|ref|ZP_04748815.1| SNF2-related protein [Mycobacterium kansasii ATCC 12478]
          Length = 1077

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            GRT ++ P  IQ++ EG  P+      + G GLNL    +       WW+     Q ++R
Sbjct: 960  GRTRNR-PKVIQQFKEGTAPVFLISLKAGGFGLNLTEA-DYCFLLDPWWNPATETQAVDR 1017

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                   + G +R V VY LIA++TI+  V+
Sbjct: 1018 -----THRIGQQRNVMVYRLIARDTIEAKVM 1043


>gi|152986052|ref|YP_001350061.1| helicase [Pseudomonas aeruginosa PA7]
 gi|150961210|gb|ABR83235.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 773

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
           A    +++   F S LA ++ A  Q         G T D+    +Q +  G++P+     
Sbjct: 616 AEGRRVLLFSQFTSMLALVEDALRQRGVDYVLLTGETRDRR-APVQRFQGGQVPVFLISL 674

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T+
Sbjct: 675 KAGGVGLNLT-AADTVIHYDPWWN-----PAVENQASDRAYRIGQDKPVFVYRLIARGTV 728

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +    + K+ + D L +
Sbjct: 729 EEKIQHLQQEKAALADGLFS 748


>gi|323487763|ref|ZP_08093021.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
 gi|323398497|gb|EGA91285.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
          Length = 1047

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +NEG+  L      + G GLNL  G + +V + LWW+    QQ        R  + G 
Sbjct: 939  RRFNEGQGELFLISLKAGGTGLNLT-GADTVVLYDLWWNPAVEQQ-----AADRAHRMGQ 992

Query: 162  KRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLLLNA 197
            ++ V V  LIA+ TI+E + + +++ K+ I D++L+ 
Sbjct: 993  EKEVQVVRLIAKGTIEEKINELQMKKKNLIDDVILSG 1029


>gi|321460021|gb|EFX71068.1| hypothetical protein DAPPUDRAFT_309233 [Daphnia pulex]
          Length = 1322

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+    QQ ++R     Q +   +  V VY LI + TI+E 
Sbjct: 1205 GLGINLT-AADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQAREHIVTVYRLICKGTIEER 1263

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +LQR R KS IQ ++++ 
Sbjct: 1264 ILQRAREKSKIQKIVISG 1281


>gi|116623003|ref|YP_825159.1| SNF2-like protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116226165|gb|ABJ84874.1| SNF2-related protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 1073

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A ++  +  G T D+        N+ +  L      + G GLNL      +     WW
Sbjct: 944  DAAGVRYEYLDGSTRDRQARVDTFQNDPQCTLFLISLKAGGLGLNLT-AAEYVFLLDPWW 1002

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +       +E   V R  + G  R VF Y LIA++T++E VL+  +TK  + D +L
Sbjct: 1003 N-----PAVEAQAVDRAHRIGQTRPVFAYRLIARDTVEEKVLELQKTKRELADAIL 1053


>gi|328881666|emb|CCA54905.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 948

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL   G++ V +  WW+       +E     R  + G
Sbjct: 835 VDRFQAGEVPVFLLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVEEQATDRAYRIG 888

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ L+A+ T+++ + + LR K  + D +L +
Sbjct: 889 QTQPVQVHRLVAEGTVEDRIAEMLRAKRALADAVLGS 925


>gi|313618637|gb|EFR90589.1| SNF2 family helicase [Listeria innocua FSL S4-378]
          Length = 208

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ-GRTL----DKDPC-----TIQEWNEGKIPLLFA 114
           + N   I++   F   LA +++   + G+ L     K P       +  +NEG+  +   
Sbjct: 46  RENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEGENDIFLI 105

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 106 SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 159

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           TI+E +    + K  + D L+
Sbjct: 160 TIEERIFDLQKKKQALVDELI 180


>gi|326329299|ref|ZP_08195624.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325952874|gb|EGD44889.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 907

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + EG++P+      + G GLNL    ++ +    WW+       +E     R  + G
Sbjct: 785 VERFQEGEVPVFLLSLKAGGVGLNLTRADHV-IHVDRWWN-----PAVEDQATDRAHRIG 838

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LI Q T++E V + L+ K  + D +L A
Sbjct: 839 QTRTVQVHRLITQGTVEERVAELLQRKRVLADAVLGA 875


>gi|313608461|gb|EFR84385.1| SNF2 family helicase [Listeria monocytogenes FSL F2-208]
          Length = 966

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +NEG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G
Sbjct: 850 VNAFNEGENDIFLISLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIG 903

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            KR V V+ +I + TI+E +    + K  + D L+
Sbjct: 904 QKRVVQVFRMITKGTIEERIFDLQKKKQALVDELI 938


>gi|253745191|gb|EET01274.1| Transcriptional activator, putative [Giardia intestinalis ATCC 50581]
          Length = 1837

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL     + +F+   W+  +  Q ++R+      + G K++V +Y L+ + +IDE +L
Sbjct: 1725 GLNLTRASTV-IFYENDWNPTQDAQAMDRV-----HRLGQKKSVVIYRLVTEGSIDEKIL 1778

Query: 182  QRLRTKSTIQDLLLNALKKE 201
            ++ R+K  +Q+L+L   +++
Sbjct: 1779 EKARSKEIVQELVLRGQRRD 1798


>gi|195451229|ref|XP_002072824.1| GK13479 [Drosophila willistoni]
 gi|194168909|gb|EDW83810.1| GK13479 [Drosophila willistoni]
          Length = 1892

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1240 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1291

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1292 ERILQRAREKSEIQRMVISG 1311


>gi|47459148|ref|YP_016010.1| SWF/SNF family helicase [Mycoplasma mobile 163K]
 gi|47458477|gb|AAT27799.1| swf/snf family helicase-like protein [Mycoplasma mobile 163K]
          Length = 958

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 23/160 (14%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW-N 105
           IK+++++ +K     +++   F  ++   +K F +         G+T  K+   I E+ N
Sbjct: 800 IKSIKLLKQK-----VLIFTQFTKNIPFFEKNFIKSNIKYDIISGKTNKKERFKITEYFN 854

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E   I +L     +   GLNL    N+ + + +WW+     Q I+R+      + G KR 
Sbjct: 855 ESSDIDVLIISLRAGSLGLNLTSANNV-ILYDIWWNQSVESQAIDRV-----HRIGQKRG 908

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
           V V+ LI ++TI+E V +    K  I D++L N+L+ + I
Sbjct: 909 VNVFKLIMKDTIEEKVFELQSQKQKIIDIVLENSLETKNI 948


>gi|159111807|ref|XP_001706134.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
 gi|157434227|gb|EDO78460.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
          Length = 1859

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL     + +F+   W+  +  Q ++R+      + G K++V +Y L+ + +IDE +L
Sbjct: 1747 GLNLTRASTV-IFYENDWNPTQDAQAMDRV-----HRLGQKKSVVIYRLVTEGSIDEKIL 1800

Query: 182  QRLRTKSTIQDLLLNALKKE 201
            ++ R+K  +Q+L+L   +++
Sbjct: 1801 EKARSKEIVQELVLRGQRRD 1820


>gi|319949229|ref|ZP_08023314.1| SNF2-related protein [Dietzia cinnamea P4]
 gi|319437114|gb|EFV92149.1| SNF2-related protein [Dietzia cinnamea P4]
          Length = 818

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAY--HFNSDLARLQK-----AFPQGRTLDKDPCTIQEWN 105
           DE I AL  ++ + + A +   +  + ++ +ARL+      A   G T D+    + E+ 
Sbjct: 656 DELIAALREVVAEGHRALVFSQFTTYLDTVVARLRDEGITVAHLDGSTTDR-AGAVGEFT 714

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG   +      + G GLNL  G + +     WW+     Q ++R       + G  R V
Sbjct: 715 EGGAQVFCLSLKAGGVGLNL-VGADYVFLLDPWWNPATEAQAVDR-----AHRIGQTRPV 768

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
            VY ++A++TI+E V++  + K+ +
Sbjct: 769 LVYRMVARDTIEERVVELQQRKAEL 793


>gi|157132188|ref|XP_001662505.1| helicase [Aedes aegypti]
 gi|108871256|gb|EAT35481.1| helicase [Aedes aegypti]
          Length = 1372

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1187 NRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1240

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1241 --VTVYRLICKGTIEERILQRAREKSEIQRMVISG 1273


>gi|66801511|ref|XP_629681.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60463108|gb|EAL61303.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2129

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 110  PLLFAHPAS---CGHGLNLQYGGNILVFFSLWWDL--EEHQQMIERIGVTRQRQAGFKRA 164
            P +FA   S   CG G+NL     ++ + S W     E+ Q    R+G TR         
Sbjct: 1833 PSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTR--------P 1884

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V VY LI +NTI+E +L+R + K  IQ +++   K E+
Sbjct: 1885 VTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFES 1922


>gi|198455503|ref|XP_001360023.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
 gi|198133273|gb|EAL29175.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
          Length = 1662

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1244 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1295

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1296 ERILQRAREKSEIQRMVISG 1315


>gi|302607772|emb|CBW45684.1| putative helicase [Streptomyces pristinaespiralis]
          Length = 936

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 823 VQRFQDGEVPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVEAQATDRAYRIG 876

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R+V V+ +IA+ TI++ +   L +K  + D +L +
Sbjct: 877 QTRSVQVHKMIAEGTIEDRIAALLESKKDLADAVLGS 913


>gi|297196538|ref|ZP_06913936.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153265|gb|EFH32249.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 923

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 810 VQRFQDGEVPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVEAQATDRAYRIG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R+V V+ +IA+ TI++ +   L +K  + D +L +
Sbjct: 864 QTRSVQVHKMIAEGTIEDRIAALLESKKDLADAVLGS 900


>gi|260790077|ref|XP_002590070.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
 gi|229275258|gb|EEN46081.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
          Length = 1878

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1498 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1549

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +LQR R KS IQ ++++  K
Sbjct: 1550 ERILQRAREKSEIQRMVISGGK 1571


>gi|17862908|gb|AAL39931.1| SD02886p [Drosophila melanogaster]
          Length = 1638

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1235 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1286

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1287 ERILQRAREKSEIQRMVISG 1306


>gi|24648168|ref|NP_732413.1| Ino80 [Drosophila melanogaster]
 gi|75026769|sp|Q9VDY1|INO80_DROME RecName: Full=Putative DNA helicase Ino80; Short=dINO80
 gi|23171713|gb|AAF55658.2| Ino80 [Drosophila melanogaster]
          Length = 1638

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1235 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1286

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1287 ERILQRAREKSEIQRMVISG 1306


>gi|308160724|gb|EFO63198.1| Transcriptional activator, putative [Giardia lamblia P15]
          Length = 1860

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL     + +F+   W+  +  Q ++R+      + G K++V +Y L+ + +IDE +L
Sbjct: 1748 GLNLTRASTV-IFYENDWNPTQDAQAMDRV-----HRLGQKKSVVIYRLVTEGSIDEKIL 1801

Query: 182  QRLRTKSTIQDLLLNALKKE 201
            ++ R+K  +Q+L+L   +++
Sbjct: 1802 EKARSKEIVQELVLRGQRRD 1821


>gi|224371758|ref|YP_002605922.1| putative helicase [Desulfobacterium autotrophicum HRM2]
 gi|223694475|gb|ACN17758.1| putative helicase [Desulfobacterium autotrophicum HRM2]
          Length = 942

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+     +   +     L     + G GLNL    + +  F  WW++    Q I+R
Sbjct: 823 GATRDRSAIVERFQTDNSCAALMMTLKTGGLGLNLT-AADYVFLFDPWWNVAAENQAIDR 881

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  VF Y LIA+NTI+E +L+    K  + D L+ A
Sbjct: 882 -----AHRMGQKNTVFSYRLIARNTIEEKILKLQAKKKALFDSLIAA 923


>gi|195109608|ref|XP_001999375.1| GI24474 [Drosophila mojavensis]
 gi|193915969|gb|EDW14836.1| GI24474 [Drosophila mojavensis]
          Length = 1663

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1249 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1300

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1301 ERILQRAREKSEIQRMVISG 1320


>gi|195062800|ref|XP_001996256.1| GH22391 [Drosophila grimshawi]
 gi|193899751|gb|EDV98617.1| GH22391 [Drosophila grimshawi]
          Length = 1659

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1255 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1306

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1307 ERILQRAREKSEIQRMVISG 1326


>gi|307192391|gb|EFN75626.1| Putative DNA helicase Ino80 [Harpegnathos saltator]
          Length = 1449

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1033 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1084

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1085 ERILQRAREKSEIQRMVISG 1104


>gi|242012609|ref|XP_002427022.1| predicted protein [Pediculus humanus corporis]
 gi|212511267|gb|EEB14284.1| predicted protein [Pediculus humanus corporis]
          Length = 1570

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1216 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1267

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1268 ERILQRAREKSEIQRMVISG 1287


>gi|326789214|ref|YP_004307035.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
 gi|326539978|gb|ADZ81837.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
          Length = 1119

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+N   IP+      + G GLNL  G ++++ +  WW+L    Q        R  + G
Sbjct: 1009 VNEFNTSDIPVFLISLKAGGTGLNLT-GADVVIHYDPWWNLSSQNQ-----ATDRAYRIG 1062

Query: 161  FKRAVFVYYLIAQNTIDELV 180
             K  V V+ +I +N+I+E +
Sbjct: 1063 QKNKVQVFQMITKNSIEEKI 1082


>gi|221057618|ref|XP_002261317.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|194247322|emb|CAQ40722.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 875

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIE 149
           +DK    I+ + N+ KI +      +CG GLNL    N +VF  L+W    + + +    
Sbjct: 666 IDKRELYIKSFQNDDKIKIALLSLTACGLGLNLT-AANTVVFGELYWVPGQIIQAEDRAH 724

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           RIG T +        + ++YLIAQ TIDE V + +  K       LN ++
Sbjct: 725 RIGTTHE-------VINIHYLIAQKTIDETVWRIINRKWNTLTTALNGME 767


>gi|195391896|ref|XP_002054595.1| GJ24541 [Drosophila virilis]
 gi|194152681|gb|EDW68115.1| GJ24541 [Drosophila virilis]
          Length = 1632

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1249 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1300

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1301 ERILQRAREKSEIQRMVISG 1320


>gi|194364294|ref|YP_002026904.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194347098|gb|ACF50221.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1104

 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +Q + +G++PL      + G GLNL    + ++ F  WW+     Q  +R       + G
Sbjct: 977  VQRFMQGEVPLFLISLKAGGVGLNLT-AADTVIHFDPWWNPAAENQASDR-----AHRIG 1030

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ VFVY LIA  +I+E + +    K+ + + +L
Sbjct: 1031 QQQPVFVYRLIAAGSIEERIAELQERKAMLAESIL 1065


>gi|330443940|ref|YP_004376926.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
 gi|328807050|gb|AEB41223.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
          Length = 1117

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GNI++ +  WW+  +  Q ++R+      + G K  VF+Y LI +NT++
Sbjct: 1012 AAGTGINLT-AGNIVIMYDRWWNPAKENQALDRV-----HRFGQKNTVFIYKLITENTLE 1065

Query: 178  ELV 180
            E +
Sbjct: 1066 ERI 1068


>gi|70944659|ref|XP_742238.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521100|emb|CAH78659.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIE 149
           +DK    I+ + ++ KI +      +CG GLNL    N +VF  L+W    + + +    
Sbjct: 223 IDKREVYIKNFQSDEKIRIAILSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDRAH 281

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           RIG T          + ++YL+AQNTIDE+V
Sbjct: 282 RIGTTHD-------TINIHYLVAQNTIDEVV 305


>gi|170070470|ref|XP_001869591.1| helicase [Culex quinquefasciatus]
 gi|167866368|gb|EDS29751.1| helicase [Culex quinquefasciatus]
          Length = 1569

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1255 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1306

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1307 ERILQRAREKSEIQRMVISG 1326


>gi|328543336|ref|YP_004303445.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
 gi|326413081|gb|ADZ70144.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 26/209 (12%)

Query: 4   YHKFQRELYCDLQ---GENIEAFNSAS--KTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
           Y K + E+ C+++   GE   A+ S +  K  + +QLA N ++ + E     E    K +
Sbjct: 255 YDKMRDEMVCEIEAMSGEQYRAYASTALAKLTRLVQLACNPSLIFPE----AEGTPAKFE 310

Query: 58  ALEVIIEKANAAP---IIVAYHF----NSDLARLQKA---FPQGRTLDKDPCTIQEWNEG 107
           AL+ +IE   + P   +I+  ++     + LAR+  A   +    T ++         + 
Sbjct: 311 ALDGVIEDILSVPGRKVILWSNYIRTIETLLARIPGAVAIYGGTPTSERQEIAASFQQDP 370

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L A+PA+ G G  L    +  ++ SL W  + + Q  +R       + G    V  
Sbjct: 371 DVRVLIANPAAAGTGFTLT-AASFTIYESLSWRYDHYAQSQDR-----NHRIGQTEPVTY 424

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LIA +TI+E ++  L  KS +   LL 
Sbjct: 425 LRLIAADTIEEAIVVALERKSALARTLLG 453


>gi|282891309|ref|ZP_06299811.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498806|gb|EFB41123.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1166

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 101  IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++NE + IP+      + G GLNL  G + ++ + +WW+     Q  +R+      + 
Sbjct: 1056 VKKFNEDENIPIFLVSLKAGGTGLNL-IGADTVIHYDMWWNPAVENQATDRV-----HRL 1109

Query: 160  GFKRAVFVYYLIAQNTIDELVLQ 182
            G K++V  Y LI   TI+E +LQ
Sbjct: 1110 GQKKSVLSYKLITLGTIEEKILQ 1132


>gi|317491226|ref|ZP_07949662.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
 gi|316920773|gb|EFV42096.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
          Length = 1085

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    +Q +  G++PL      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 965  GSTADRH-APVQRFQRGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 1022

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  + VFVY LIA  +I+E ++     K+ + + +L+
Sbjct: 1023 -----AHRMGQDKPVFVYKLIAAGSIEEKIVALQDKKAALANSILS 1063


>gi|302916069|ref|XP_003051845.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
 gi|256732784|gb|EEU46132.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
          Length = 1919

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+ +NEG   +      + G GLN+ +G N +V F + W+       +E+ G+ R  + G
Sbjct: 1340 IKRFNEGSKEVYLISTTAGGVGLNI-HGANRVVIFDIKWN-----PTVEQQGIGRAYRLG 1393

Query: 161  FKRAVFVYYLIAQNTIDELV 180
             K+ VFVY+L    T ++++
Sbjct: 1394 QKKPVFVYWLTTAGTFEQII 1413


>gi|94985591|ref|YP_604955.1| SNF2-related [Deinococcus geothermalis DSM 11300]
 gi|94555872|gb|ABF45786.1| Superfamily II DNA/RNA helicase, SNF2 family [Deinococcus
            geothermalis DSM 11300]
          Length = 1126

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T D+    +Q + +G++P+      + G GLNL    + ++    WW+     Q  +R
Sbjct: 997  GQTKDR-ATPVQRFQQGEVPVFLISLKAGGVGLNLT-AADTVIHLDPWWNPAAENQATDR 1054

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFVY LIA  +++E +L   + KS +   +L+ 
Sbjct: 1055 -----AYRIGQDKPVFVYKLIAAGSVEERILDLQQRKSALAQGVLDG 1096


>gi|260584382|ref|ZP_05852129.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
 gi|260157900|gb|EEW92969.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
          Length = 790

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 24/189 (12%)

Query: 11  LYCDLQGENIEAFNSASKTVKC--LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           L+ +   + IE + S + + KC  ++L   A   ++ +  K++ D   +A E      N 
Sbjct: 565 LWSEFSDKQIELYESEAFSEKCSVMKLRRMAFLGEDSEKIKQIIDICKEARE------NG 618

Query: 69  APIIVAYHFNSD-LARLQKAFPQGRTL----DKDPCTIQE-----WNEGKIPLLFAHPAS 118
             ++V   F +D L RL++  P   +     D  P   QE       +    +L A   +
Sbjct: 619 MKVLVFSFFKTDVLYRLRELVPNTASDILSGDISPARRQEVIDEFSKDSNQTVLLAQIEA 678

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLN+Q   NI++     W     QQ I R+      + G  R V VY L+ +++IDE
Sbjct: 679 GGVGLNIQ-SANIVILCEPQWKPSTEQQAISRV-----YRMGQTRDVLVYRLLTKDSIDE 732

Query: 179 LVLQRLRTK 187
            ++  +  K
Sbjct: 733 PIMALIHKK 741


>gi|312877116|ref|ZP_07737087.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796090|gb|EFR12448.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 1126

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G ++++ + LWW+       +E   + R  + G + 
Sbjct: 1020 FNSGQKQVFLISLKAGGFGLNLT-GADVVILYDLWWN-----PAVENQAMDRAHRIGQEN 1073

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +V V+ LI +NTI+E + +  + K  + D ++ +
Sbjct: 1074 SVQVFRLITKNTIEERIFELQQKKKDLFDTIIQS 1107


>gi|307189408|gb|EFN73818.1| Putative DNA helicase Ino80 [Camponotus floridanus]
          Length = 1624

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1157 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1208

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1209 ERILQRAREKSEIQRMVISG 1228


>gi|139438973|ref|ZP_01772433.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
 gi|133775684|gb|EBA39504.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
          Length = 1173

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++  G++P+      + G GLNL    ++++ +  WW++    Q  +R       + G
Sbjct: 1061 VAQFQAGEVPVFLISLKAGGVGLNLT-AADVVIHYDPWWNVAAQDQATDR-----AHRIG 1114

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +  V VY LIA++TI+E +   +R + + +DL+ + L  + I
Sbjct: 1115 QQHTVTVYKLIAKDTIEERI---MRMQESKRDLVNSVLGGDGI 1154


>gi|229489289|ref|ZP_04383153.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
 gi|229323782|gb|EEN89539.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
          Length = 1060

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D  R+  ++  G T ++    ++E+  G +P+      + G GLNL       +    WW
Sbjct: 932  DEERIPYSYLDGSTRNRGE-VLEEFKSGAVPVFLISLKAGGFGLNLTEADYCFIL-DPWW 989

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q ++R       + G  R V VY LIA++TI+E V+     KS +   +++A
Sbjct: 990  NPAAEAQAVDR-----THRIGQTRNVMVYRLIAKDTIEEKVMALKAKKSALFSNVMDA 1042


>gi|328867774|gb|EGG16155.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 2377

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +CG G+NL    + ++FF   W+    +Q ++R       + G +R V VY L+ + T++
Sbjct: 2091 ACGIGINLT-AADTVIFFDSDWNPTMDEQAMDRC-----HRLGQQRPVTVYRLVTKGTVE 2144

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E V++R + K  IQ +++   K E
Sbjct: 2145 ERVIKRAKQKHQIQSIVIAGGKFE 2168


>gi|312170918|emb|CBX79177.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 852

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 734 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 792 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|292900753|ref|YP_003540122.1| helicase [Erwinia amylovora ATCC 49946]
 gi|291200601|emb|CBJ47732.1| putative helicase [Erwinia amylovora ATCC 49946]
          Length = 852

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 734 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 792 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|156538236|ref|XP_001602268.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1536

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1137 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1188

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1189 ERILQRAREKSEIQRMVISG 1208


>gi|292486850|ref|YP_003529720.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
 gi|291552267|emb|CBA19304.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
          Length = 852

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 734 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 792 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|160935631|ref|ZP_02083006.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
 gi|158441375|gb|EDP19085.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
          Length = 1075

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++ + ++P+      + G GLNL    +I++ +  WW++    Q  +R       + G
Sbjct: 965  VGDFGKDEVPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVAAQNQATDRT-----HRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + V VY LI +NTI+E +L+    KS + D ++
Sbjct: 1019 QDKQVTVYKLITRNTIEENILKLQEAKSHLADAVV 1053


>gi|328786874|ref|XP_393832.4| PREDICTED: putative DNA helicase Ino80-like [Apis mellifera]
          Length = 1636

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1178 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1229

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ ++++ 
Sbjct: 1230 ERILQRAREKSEIQRMVISG 1249


>gi|332024475|gb|EGI64673.1| Putative DNA helicase Ino80 [Acromyrmex echinatior]
          Length = 1115

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 644 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 695

Query: 178 ELVLQRLRTKSTIQDLLLNA--LKKETI 203
           E +LQR R KS IQ ++++    K +T+
Sbjct: 696 ERILQRAREKSEIQRMVISGGNFKPDTL 723


>gi|255564822|ref|XP_002523405.1| Helicase, putative [Ricinus communis]
 gi|223537355|gb|EEF38984.1| Helicase, putative [Ricinus communis]
          Length = 2029

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            KI L      S G G+NL +G + ++F+   W+    QQ  +R       + G  R V +
Sbjct: 1101 KIFLFILSTRSGGVGINL-FGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHI 1154

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1155 YRLISESTIEENILKKANQKRALDDLVIQS 1184


>gi|83649604|ref|YP_438039.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83637647|gb|ABC33614.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis KCTC
            2396]
          Length = 1106

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+D   +  +  G++ L      + G GLNL     + + +  WW+       +E 
Sbjct: 987  GATKDRD-TPVNRFQNGEVSLFLISLKAGGVGLNLTAADTV-IHYDPWWN-----PAVEN 1039

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G  + VFVY LI + T++E +++  + K  + D LL
Sbjct: 1040 QATDRAYRIGQDKPVFVYKLITEGTVEEKIVELQKQKQALADNLL 1084


>gi|168703233|ref|ZP_02735510.1| SNF2-related protein [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +Q  +  GRT D+D    +   +    L      + G GLNL      +     WW+   
Sbjct: 973  IQFEYLDGRTRDRDKRVERFQTDPACKLFLVSLKAGGVGLNLT-AAEYVFLLDPWWNPAA 1031

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              Q I+R       + G  + VF Y LIA+ T++E VL+  ++K  + D +L
Sbjct: 1032 EAQAIDR-----SYRIGQTKPVFAYRLIARGTVEEKVLELQQSKRELADAIL 1078


>gi|120611497|ref|YP_971175.1| SNF2-like protein [Acidovorax citrulli AAC00-1]
 gi|120589961|gb|ABM33401.1| SNF2-related protein [Acidovorax citrulli AAC00-1]
          Length = 991

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG  P+L A   + G GLNL    + ++    WW+    +Q        R  + G  R V
Sbjct: 857 EGSAPILLASLKAGGTGLNLT-AADTVIHLDPWWNPAVMEQ-----ASARAHRIGQDRPV 910

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           F+++L+A+ +I+E +L+    K  + D +L
Sbjct: 911 FIHHLVAEGSIEERMLELQARKQALADGVL 940


>gi|320587436|gb|EFW99916.1| DNA repair and recombination protein rad54 [Grosmannia clavigera
           kw1407]
          Length = 809

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 643 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 696

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           + QR   K ++   +++A   + + 
Sbjct: 697 IFQRQSHKQSLSTCVVDAAAGDDVE 721


>gi|24373219|ref|NP_717262.1| Snf2 family protein [Shewanella oneidensis MR-1]
 gi|24347445|gb|AAN54706.1|AE015611_4 Snf2 family protein [Shewanella oneidensis MR-1]
          Length = 1070

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+        ER    R  + G
Sbjct: 962  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWN-----PAAERQATDRAHRIG 1015

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  VFVY LIA+ T++E + +  + K  + D +L  
Sbjct: 1016 QENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILEG 1052


>gi|256828244|ref|YP_003156972.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
 gi|256577420|gb|ACU88556.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
          Length = 1068

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  +IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 964  NTPEIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVEDQATDRTHRIGQTRQ 1017

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y +I +NT++E +L+   +K  I D ++
Sbjct: 1018 VFAYKMICENTVEEKILKLQESKKGIADSII 1048


>gi|269302622|gb|ACZ32722.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1215

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y LI ++T++
Sbjct: 1092 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLITEDTLE 1145

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D ++ +     +H+
Sbjct: 1146 ERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|297155115|gb|ADI04827.1| SNF2/RAD54 family helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1008

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + EG++P+      + G GLNL   G++ V +  WW+       +E     R  + G
Sbjct: 894 VDRFQEGEVPVFLLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVEAQATDRAYRIG 947

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ T+++ +   L  K  + D +L A
Sbjct: 948 QTQPVQVHRLIAEGTVEDRIAAILERKRELADAVLGA 984


>gi|329922954|ref|ZP_08278470.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328941727|gb|EGG38012.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 1111

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +NEG+  +      + G GLNL  G + ++ + LWW+    QQ ++R       + G 
Sbjct: 1001 ERFNEGEREVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAMDR-----AHRIGQ 1054

Query: 162  KRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLL 194
            K+ V V   +AQ+TI D++V  + + K  I++L+
Sbjct: 1055 KKVVQVIRFVAQDTIEDKMVALQQKKKDLIEELV 1088


>gi|254304002|ref|ZP_04971360.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324194|gb|EDK89444.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 65  KANA-APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPAS 118
           +AN  A I++ Y+FN +   ++K       +      I ++++     GK  L+     +
Sbjct: 262 RANTEANILIFYNFNREAREIKKIIKVDFEVSGAVSNIPKFDDYDTLKGKTTLV--QIQA 319

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+ LQY   + +FFS  W  +++ Q      + R  + G K  V VY  I + TI+E
Sbjct: 320 GGAGIELQYNSEV-IFFSPTWSFQDYSQ-----ALGRAYRIGQKNKVTVYKYIGKRTIEE 373

Query: 179 LVLQRLRTKSTIQDLLL 195
            V  RL  K    + LL
Sbjct: 374 RVYARLDEKKDFAEKLL 390


>gi|15618744|ref|NP_225030.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|16752203|ref|NP_445571.1| Snf2/Rad54 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242195|ref|NP_877136.1| SNF protein [Chlamydophila pneumoniae TW-183]
 gi|4377149|gb|AAD18973.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|7189947|gb|AAF38809.1| helicase, Snf2/Rad54 family [Chlamydophila pneumoniae AR39]
 gi|33236706|gb|AAP98793.1| SNF protein [Chlamydophila pneumoniae TW-183]
          Length = 1215

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y LI ++T++
Sbjct: 1092 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLITEDTLE 1145

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D ++ +     +H+
Sbjct: 1146 ERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|238063663|ref|ZP_04608372.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
 gi|237885474|gb|EEP74302.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
          Length = 929

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 25/180 (13%)

Query: 34  QLANGAVYYDEEKHWKEV-HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARL---- 84
           Q+ N   +Y +E H +     EK+  L    E I+ +   A +   Y     +ARL    
Sbjct: 736 QVCNHPAHYLKEPHGRLTGRSEKLHLLDDLLETILAEEGGALVFTQY---VQMARLLKRH 792

Query: 85  --QKAFPQ-----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             ++  P      G  + +    ++ +  G++P+      + G GLNL    ++ + F  
Sbjct: 793 LAERGVPAQLLHGGTPVPQREEMVRRFQAGEVPVFLLSLKAAGTGLNLTRADHV-IHFDR 851

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WW+       +E     R  + G  + V V+ LIAQ T+++ +   L +K  + D +L  
Sbjct: 852 WWN-----PAVEEQATDRAYRIGQTKPVQVHRLIAQGTLEDRIAALLESKRELADAVLTG 906


>gi|323697573|ref|ZP_08109485.1| SNF2-related protein [Desulfovibrio sp. ND132]
 gi|323457505|gb|EGB13370.1| SNF2-related protein [Desulfovibrio desulfuricans ND132]
          Length = 1069

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 101  IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +NE   IP+      + G GLNL    + ++ +  WW+       +E     R  + 
Sbjct: 960  VDRFNENPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRI 1013

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
            G KR VF Y +I QNT++E +L+    K  + + ++   +ALK  T
Sbjct: 1014 GQKRQVFAYKMIRQNTVEERILKLQEQKKDVAEAIIPGQSALKSLT 1059


>gi|217076139|ref|YP_002333855.1| helicase [Thermosipho africanus TCF52B]
 gi|217035992|gb|ACJ74514.1| helicase [Thermosipho africanus TCF52B]
          Length = 835

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 27/188 (14%)

Query: 30  VKCLQLAN-GAVYYDEE--KH----------WKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           +K LQ+ + GA Y+DE   KH            E+ ++K KAL  I  K      I+   
Sbjct: 641 IKLLQVCDFGADYFDENFYKHSGKLNKLKDLMIEIKNKKEKAL--IFTKFIMTQQIIKAF 698

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             ++L    +       ++     ++++N+GKI +L  +P   G GLNL    N ++ ++
Sbjct: 699 LRNELGIESEILNGTVPIETRNYIVKQFNDGKIDVLIINPRVGGVGLNL-VAANHVIHYT 757

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTI 190
             W+     Q        R  + G  + V+VYY  ++       TI+E  ++ L  K  I
Sbjct: 758 PEWNPAVTSQ-----ATDRAYRIGQDKDVYVYYFFSKFRNNHNKTIEEYFMKLLERKKQI 812

Query: 191 QDLLLNAL 198
           +++LL+ +
Sbjct: 813 KNILLDNI 820


>gi|270014503|gb|EFA10951.1| hypothetical protein TcasGA2_TC004111 [Tribolium castaneum]
          Length = 1441

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + +I+
Sbjct: 1167 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGSIE 1218

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ L+++ 
Sbjct: 1219 ERILQRAREKSEIQKLVISG 1238


>gi|315639730|ref|ZP_07894869.1| Snf2 family protein [Enterococcus italicus DSM 15952]
 gi|315484507|gb|EFU74964.1| Snf2 family protein [Enterococcus italicus DSM 15952]
          Length = 1055

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPC-TIQE 103
            E++K L ++  K N   +++   F S L+          L   + +G T  KD    +  
Sbjct: 887  EQVKDL-LLAAKENKRRVLLFSQFTSMLSLIADELDEMGLSHFYLRGSTPPKDRIEMVDA 945

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  +      + G GLNL  G N ++ + LWW+       +E     R  + G K+
Sbjct: 946  FNEGEADVFLISLKAGGTGLNLT-GANTVILYDLWWN-----PAVEEQAAGRAHRMGQKQ 999

Query: 164  AVFVYYLIAQNTIDE 178
             V ++ +I++ TI+E
Sbjct: 1000 VVEIWRMISEGTIEE 1014


>gi|189233685|ref|XP_970280.2| PREDICTED: similar to helicase [Tribolium castaneum]
          Length = 1427

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + +I+
Sbjct: 1153 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGSIE 1204

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR R KS IQ L+++ 
Sbjct: 1205 ERILQRAREKSEIQKLVISG 1224


>gi|255659992|ref|ZP_05405401.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
 gi|260847745|gb|EEX67752.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
          Length = 1078

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+N G +P+      + G GLNL  G +++V F  WW+       +E     R  + G
Sbjct: 969  VREFNRGAVPIFLISLKAGGTGLNLT-GADMVVHFDPWWN-----PAVEDQATDRAYRLG 1022

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +  V V+ LI + T++E + +    K ++ D ++ 
Sbjct: 1023 QRNNVQVFKLIMKGTVEEKIYELQEKKKSLIDQMIQ 1058


>gi|239623482|ref|ZP_04666513.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521513|gb|EEQ61379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1088

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+    +P+      + G GLNL    +I++ +  WW++    Q  +R       + G
Sbjct: 975  VGEFQRDDVPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVAAQNQATDRT-----HRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++ V VY LI +NTI+E +L+   +K  + D ++ 
Sbjct: 1029 QEKQVTVYKLITRNTIEENILKLQESKQYLADQIVT 1064


>gi|123977009|ref|XP_001330686.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
 gi|121897321|gb|EAY02446.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
          Length = 1326

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L  A  ++ GHG+NL    N++VFF L W+     Q  +R+      + G K+ V +Y +
Sbjct: 1196 LFIATKSAAGHGINLT-AANVVVFFELNWNPAIDLQAEDRV-----HRIGQKKQVRIYSI 1249

Query: 171  IAQNTIDELVLQRLRTKSTIQD 192
            + + TIDE +    + K  I D
Sbjct: 1250 VMEGTIDERIENSQKRKKMIMD 1271


>gi|171915800|ref|ZP_02931270.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++  G +P+      + G G+ L    + ++ +  WW+       IE     R  + G
Sbjct: 787 VEQFQNGDMPVFLISLKAGGVGITLT-AADTVIHYDPWWN-----PAIEAQATDRAYRIG 840

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ VFV+ LI Q TI+E +++  R KS + + LL  
Sbjct: 841 QKKPVFVHKLICQGTIEERIVEMQRRKSALINGLLTG 877


>gi|90409119|ref|ZP_01217240.1| Snf2 family protein [Psychromonas sp. CNPT3]
 gi|90309770|gb|EAS37934.1| Snf2 family protein [Psychromonas sp. CNPT3]
          Length = 1080

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T D+    I+ +  G++P+      + G GLNL    + ++ +  WW+       +E 
Sbjct: 960  GQTRDRG-AIIERFQSGEVPIFLISLKAGGVGLNLT-AADTVIHYDPWWN-----PAVEN 1012

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                R  + G  + VFVY LI + T++E VL
Sbjct: 1013 QATDRAYRIGQDKPVFVYKLICEQTVEERVL 1043


>gi|326317215|ref|YP_004234887.1| SNF2-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374051|gb|ADX46320.1| SNF2-related protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 947

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG  P+L A   + G GLNL    + +V    WW+    +Q        R  + G  + V
Sbjct: 813 EGSAPILLASLKAGGTGLNLT-AADTVVHLDPWWNPAVMEQ-----ASARAHRIGQDKPV 866

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           FV++L+A+ +I+E +L+    K  + D +L
Sbjct: 867 FVHHLVAEGSIEERMLELQARKQALADGVL 896


>gi|308472052|ref|XP_003098255.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
 gi|308269241|gb|EFP13194.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      + G K+ VF
Sbjct: 101 GGAKVMLLSLTAGGVGLNL-TGGNHLIMIDLHWNPALEQQAFDRI-----YRMGQKKPVF 154

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++ LI + TI++ V++  ++K T+   +L+ 
Sbjct: 155 IHRLITKGTIEQRVVELQKSKLTLASSVLDG 185


>gi|291436286|ref|ZP_06575676.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339181|gb|EFE66137.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 692

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 579 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 632

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L++K  + D +L +
Sbjct: 633 QTQPVQVHRLITEGTVEDRIAEMLQSKRALADAILGS 669


>gi|289768102|ref|ZP_06527480.1| helicase [Streptomyces lividans TK24]
 gi|289698301|gb|EFD65730.1| helicase [Streptomyces lividans TK24]
          Length = 974

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 861 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 914

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L++K  + D +L +
Sbjct: 915 QTQPVQVHRLITEGTVEDRIAEMLQSKRALADAILGS 951


>gi|256784218|ref|ZP_05522649.1| helicase [Streptomyces lividans TK24]
          Length = 979

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 866 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 919

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L++K  + D +L +
Sbjct: 920 QTQPVQVHRLITEGTVEDRIAEMLQSKRALADAILGS 956


>gi|239927952|ref|ZP_04684905.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 701

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 588 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 641

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L++K  + D +L +
Sbjct: 642 QTQPVQVHRLITEGTVEDRIAEMLQSKRALADAILGS 678


>gi|21224583|ref|NP_630362.1| helicase [Streptomyces coelicolor A3(2)]
 gi|6273667|emb|CAB60181.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 977

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 864 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 917

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L++K  + D +L +
Sbjct: 918 QTQPVQVHRLITEGTVEDRIAEMLQSKRALADAILGS 954


>gi|330819988|ref|YP_004348850.1| SNF2-related protein [Burkholderia gladioli BSR3]
 gi|327371983|gb|AEA63338.1| SNF2-related protein [Burkholderia gladioli BSR3]
          Length = 1119

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A +      G T D+    +Q + +G++PL      + G GLNL    + ++ +  WW
Sbjct: 969  DAAGIAHVMLTGDTTDR-VTPVQRFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWW 1026

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +E     R  + G  + VFVY LI   +++E +L     K+ +   +L+
Sbjct: 1027 N-----PSVENQATDRAHRLGQDKPVFVYKLIVAGSVEEKILVLQEQKAALASAILS 1078


>gi|313902711|ref|ZP_07836109.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467008|gb|EFR62524.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
          Length = 1191

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + EG +P+      + G GLNL    + ++ +  WW+    +Q        R  + G  R
Sbjct: 1084 FQEGDVPVFLISLKAGGTGLNLT-AASYVIHYDPWWNPAAEEQ-----ATGRAHRIGQDR 1137

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VF Y LI + T++E +LQ    K  +   LL
Sbjct: 1138 PVFSYKLITRGTVEEKILQLQEQKRALAGALL 1169


>gi|302695791|ref|XP_003037574.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
 gi|300111271|gb|EFJ02672.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
          Length = 1161

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 12/81 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQN 174
            + G G+NL    + +VF+   W+     Q ++R   +G TRQ        V VY LI +N
Sbjct: 989  AGGVGINLT-AADTVVFYDHDWNPSNDAQAMDRAHRLGQTRQ--------VTVYRLICRN 1039

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T+DE VL+  R K  +QD+++
Sbjct: 1040 TVDERVLKMARRKKDVQDVVV 1060


>gi|170084045|ref|XP_001873246.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164650798|gb|EDR15038.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1573

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQN 174
            + G G+NL    + +VF+   W+     Q ++R   +G TRQ        V VY LI + 
Sbjct: 1393 AGGLGINLT-AADTVVFYDHDWNPSNDAQAMDRAHRLGQTRQ--------VTVYRLITKG 1443

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TIDE ++Q  R K  +QD+++
Sbjct: 1444 TIDERIIQLARVKKDVQDIVV 1464


>gi|317131242|ref|YP_004090556.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315469221|gb|ADU25825.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 1081

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N    P+      + G GLNL    +I++ +  WW++    Q  +R       + G K 
Sbjct: 968  FNNDDTPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVSAQNQATDR-----AHRIGQKS 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +V VY LIA++TI+E +L+  + K  + D +++
Sbjct: 1022 SVQVYKLIAKDTIEEKILKLQQDKLKLADSVIS 1054


>gi|270285639|ref|ZP_06195033.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270289648|ref|ZP_06195950.1| SNF2 family helicase [Chlamydia muridarum Weiss]
 gi|301337035|ref|ZP_07225237.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1199

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 14/128 (10%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +Q A  QG++ ++     +  N+    +      + G G+NL   GN+++ +  WW+  +
Sbjct: 1055 IQYALVQGKSQNRKEEIDRFSNDPNCRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAK 1113

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV-------LQRLRTKSTIQDL-LL 195
              Q ++R+      + G K  VF+Y L+ ++T++E +       ++ L   +T QD  +L
Sbjct: 1114 ENQALDRV-----HRIGQKNTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNIL 1168

Query: 196  NALKKETI 203
            + L +E +
Sbjct: 1169 HVLNREDL 1176


>gi|86741104|ref|YP_481504.1| SNF2-related [Frankia sp. CcI3]
 gi|86567966|gb|ABD11775.1| SNF2-related [Frankia sp. CcI3]
          Length = 1163

 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            ++  +  GRT D+    ++ +  G  P+      + G GLNL    +       WW+   
Sbjct: 1039 VEHCYLDGRTRDRS-TVLERFKTGSAPVFLVSLKAGGFGLNLTEA-DYCFLLDPWWNPAT 1096

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL----QRLRTKSTIQD 192
             +Q ++R       + G  R V VY L+A++TI+E V+    ++ R  S++ D
Sbjct: 1097 EEQAVDR-----THRIGQSRNVMVYRLVARDTIEEKVMAMKDRKARLFSSVMD 1144


>gi|317122409|ref|YP_004102412.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
 gi|315592389|gb|ADU51685.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
          Length = 1191

 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + EG +P+      + G GLNL    + ++ +  WW+       +E     R  + G  R
Sbjct: 1084 FQEGDVPVFLISLKAGGTGLNLT-AASYVIHYDPWWN-----PAVEEQATGRAHRIGQDR 1137

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VF Y LI + T++E +LQ    K  +   LL
Sbjct: 1138 PVFSYKLITRGTVEEKILQLQEQKRALAGALL 1169


>gi|15835457|ref|NP_297216.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163332|gb|AAF73609.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1202

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 14/128 (10%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +Q A  QG++ ++     +  N+    +      + G G+NL   GN+++ +  WW+  +
Sbjct: 1058 IQYALVQGKSQNRKEEIDRFSNDPNCRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAK 1116

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV-------LQRLRTKSTIQDL-LL 195
              Q ++R+      + G K  VF+Y L+ ++T++E +       ++ L   +T QD  +L
Sbjct: 1117 ENQALDRV-----HRIGQKNTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNIL 1171

Query: 196  NALKKETI 203
            + L +E +
Sbjct: 1172 HVLNREDL 1179


>gi|315122947|ref|YP_004064953.1| DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016707|gb|ADT70044.1| DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 1058

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T  +D   I E+  G   +      + G GLNL     + + F  WW+       +E+
Sbjct: 940  GQTRHRDKV-IDEFTSGNTSVFLISLKAGGTGLNLTQADTV-IHFDPWWN-----PAVEK 992

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G    VFVY LI  N+I++ V Q  + K  + D L 
Sbjct: 993  QATDRAYRIGQTNPVFVYKLIMANSIEQKVFQMQQDKQALVDALF 1037


>gi|332035338|gb|EGI71840.1| Snf2 family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T  +D   I E+  GK  +      + G GLNL     + + F  WW+       +E+
Sbjct: 37  GQTRQRDKV-IDEFTSGKTSVFLISLKAGGTGLNLTQADTV-IHFDPWWN-----PAVEK 89

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G    VFVY LI  N+I++ V +  + K  + D L  
Sbjct: 90  QATDRAYRIGQTNPVFVYKLIMSNSIEQKVFKMQQDKQALVDALFT 135


>gi|110639993|ref|YP_680203.1| SNF2 family DNA/RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282674|gb|ABG60860.1| superfamily II DNA/RNA helicase, SNF2 family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 977

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A ++ A+  G+T D+     +  NE  I +      + G GLNL    + +     WW
Sbjct: 848 DKAGIKYAYLDGQTRDRQAEVERFQNEEGIRVFLISLKAGGLGLNLT-AADYVFLLDPWW 906

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--- 196
           +       +E   V R  + G K  VF Y  I +NT++E +L   + K  + + L++   
Sbjct: 907 N-----PAVEAQAVDRAYRIGQKNTVFTYKFITKNTVEEKILNLQKNKLKLANDLISSEE 961

Query: 197 ----ALKKETIH 204
               AL KE I 
Sbjct: 962 TFFKALSKEDIQ 973


>gi|29840686|ref|NP_829792.1| Snf2/Rad54 family helicase [Chlamydophila caviae GPIC]
 gi|29835036|gb|AAP05670.1| helicase, Snf2/Rad54 family [Chlamydophila caviae GPIC]
          Length = 1205

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1090 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLMTEDTLE 1143

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D +++      +H+
Sbjct: 1144 ERIHYLIEKKIRLLDKVISTQNSNILHM 1171


>gi|299755713|ref|XP_001828834.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
 gi|298411348|gb|EAU92841.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
          Length = 1625

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQN 174
            + G G+NL    + ++F+   W+     Q ++R   +G TRQ        V VY LI + 
Sbjct: 1431 AGGLGINLT-AADTVIFYDHDWNPSNDAQAMDRAHRLGQTRQ--------VTVYRLITKG 1481

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TIDE ++Q  R K  +QD+++
Sbjct: 1482 TIDERIIQLARVKKDVQDIVV 1502


>gi|302780671|ref|XP_002972110.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
 gi|300160409|gb|EFJ27027.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
          Length = 1011

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 13/92 (14%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   R+      + G K+ V++Y  +A  TI+E 
Sbjct: 544 GCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRFLATGTIEEK 597

Query: 180 VLQRLRTKSTIQDLL-------LNALKKETIH 204
           V QR  +K  +Q ++       +NAL  E + 
Sbjct: 598 VYQRQMSKEGLQKVISGDSKAEVNALSTEDLR 629


>gi|302555175|ref|ZP_07307517.1| helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302472793|gb|EFL35886.1| helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 284

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 171 VDRFQAGSTPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 224

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L  K  + D +L +
Sbjct: 225 QTQPVQVHRLITEGTVEDRIAEMLEAKRALADAILGS 261


>gi|289620805|emb|CBI52539.1| putative RAD54 protein [Sordaria macrospora]
          Length = 824

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 645 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 698

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 699 IFQRQSHKQSLSSCVVDS 716


>gi|302386693|ref|YP_003822515.1| SNF2-related protein [Clostridium saccharolyticum WM1]
 gi|302197321|gb|ADL04892.1| SNF2-related protein [Clostridium saccharolyticum WM1]
          Length = 1047

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  + + +IPL      + G GLNL    ++++ F  WW++    Q  +R       + G
Sbjct: 938  VNSFKDDEIPLFLISLKAGGTGLNLT-AADVVIHFDPWWNVAAQNQATDR-----AHRIG 991

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++ V V+ LI +NTI+E +L+   +K  + + ++ 
Sbjct: 992  QEKQVSVFKLITKNTIEENILKLQESKKDLAEQIIT 1027


>gi|311742706|ref|ZP_07716515.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
 gi|311314334|gb|EFQ84242.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
          Length = 867

 Score = 44.3 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q+++ G+ P+      + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 756 VQQFSAGEAPVFVLSLKAAGTGLNLTRADHV-IHYDRWWN-----PAVEDQATDRAHRIG 809

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V+ L+++ TI+E + + + +K  + D ++NA
Sbjct: 810 QTKSVQVHRLMSEGTIEESIAELIASKRALADAVVNA 846


>gi|89897890|ref|YP_515000.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331262|dbj|BAE80855.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1206

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1090 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLMTEDTLE 1143

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D +++      +H+
Sbjct: 1144 ERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|312794614|ref|YP_004027537.1| SNF2-like protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181754|gb|ADQ41924.1| SNF2-related protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 1108

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G ++++ + LWW+       +E   + R  + G + 
Sbjct: 1002 FNSGQKQVFLISLKAGGFGLNLT-GADVVILYDLWWN-----PAVENQAMDRAHRIGQEN 1055

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +V V+ LI +NTI+E + +  + K  + D ++ +
Sbjct: 1056 SVQVFRLITKNTIEERIFELQQKKKDLFDSIVQS 1089


>gi|114048179|ref|YP_738729.1| SNF2-like protein [Shewanella sp. MR-7]
 gi|113889621|gb|ABI43672.1| SNF2-related protein [Shewanella sp. MR-7]
          Length = 1082

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 974  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1027

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +  VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1028 QENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILEGKGK 1067


>gi|7384851|dbj|BAA93079.1| Rad54 homolog [Neurospora crassa]
          Length = 834

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 652 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 705

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 706 IFQRQSHKQSLSSCVVDS 723


>gi|85092588|ref|XP_959470.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|28920899|gb|EAA30234.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|40804592|emb|CAF05853.1| Rad54 homolog MUS-25 [Neurospora crassa]
          Length = 831

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 648 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 701

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 702 IFQRQSHKQSLSSCVVDS 719


>gi|254384222|ref|ZP_04999566.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
 gi|194343111|gb|EDX24077.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
          Length = 936

 Score = 44.3 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL   G++ + F  WW+       +E     R  + G
Sbjct: 823 VDRFQAGEVPVFLLSLKAAGTGLNLTRAGHV-IHFDRWWN-----PAVEEQATDRAYRIG 876

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +IA+ T+++ + + L  K  + D +L +
Sbjct: 877 QTQPVQVHRIIAEGTVEDRIAEMLEAKRALADAVLGS 913


>gi|113970955|ref|YP_734748.1| SNF2-like protein [Shewanella sp. MR-4]
 gi|113885639|gb|ABI39691.1| SNF2-related protein [Shewanella sp. MR-4]
          Length = 1082

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 974  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1027

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +  VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1028 QENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILEGKGK 1067


>gi|329767794|ref|ZP_08259310.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
 gi|328838895|gb|EGF88489.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEWNEG 107
           +H+E  K     I  +    +I+ Y+FN +   ++   P+ R +   + +    + +N  
Sbjct: 173 IHNENKKEKLKDIINSTEGRLIIFYNFNHEKEAIKSCIPKDRPISYVNGELVDKENYNNA 232

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +   G N+Q   N L+F+S     E++ Q I+RI      + G ++  F 
Sbjct: 233 DNSITLMQYQAGAKGHNMQ-KANHLIFYSPTEKCEDYMQSIKRI-----HRIGQEKPCFY 286

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+ QN+I+E + + L       + L N 
Sbjct: 287 YKLVVQNSIEEDIYKALERGEDYTNELFNT 316


>gi|253581922|ref|ZP_04859146.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
 gi|251836271|gb|EES64808.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
          Length = 926

 Score = 44.3 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+     +   + K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 807 GSTKDRQSLVDRFQKDNKYKVFIMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 860

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  R VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 861 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 906


>gi|313851062|ref|NP_001186586.1| putative DNA helicase INO80 complex homolog 1 [Gallus gallus]
          Length = 1560

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1169 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1222

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1223 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255


>gi|330797148|ref|XP_003286624.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
 gi|325083372|gb|EGC36826.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
          Length = 1848

 Score = 43.9 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 110  PLLFAHPAS---CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            P +FA   S   CG G+NL    + +VF+   W+    +Q ++R       + G +R V 
Sbjct: 1576 PSIFAFLLSTRACGIGINLT-SADTVVFYDSDWNPTVDEQAMDRC-----HRLGQQRPVT 1629

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY LI + TI+E +L+R + K  IQ +++   K E
Sbjct: 1630 VYRLITKGTIEEKILKRAKQKHHIQSIVITGGKFE 1664


>gi|290956330|ref|YP_003487512.1| helicase [Streptomyces scabiei 87.22]
 gi|260645856|emb|CBG68947.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 968

 Score = 43.9 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 855 VDRFQSGATPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 908

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L +K  + D +L +
Sbjct: 909 QTQPVQVHRLITEGTVEDRIAEMLESKRALSDAVLGS 945


>gi|189091948|ref|XP_001929807.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803083|emb|CAD60786.1| unnamed protein product [Podospora anserina]
 gi|188219327|emb|CAP49307.1| unnamed protein product [Podospora anserina S mat+]
          Length = 800

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 638 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 691

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 692 IFQRQSHKQSLSSCVVDS 709


>gi|117921236|ref|YP_870428.1| SNF2-like protein [Shewanella sp. ANA-3]
 gi|117613568|gb|ABK49022.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 1082

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++ EG  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 974  IDKFQEGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1027

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +  VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1028 QENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILEGKGK 1067


>gi|328474032|gb|EGF44843.1| SNF2 family helicase [Listeria monocytogenes 220]
          Length = 1038

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 16/127 (12%)

Query: 65   KANAAPIIVAYHFNSDLARL-QKAFPQGRTL----DKDPC-----TIQEWNEGKIPLLFA 114
            + N   I++   F   L  + QK    G+TL     K P       +  +NEG+  +   
Sbjct: 910  RENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLI 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I + 
Sbjct: 970  SLKAGGTGLNL-VGADTVILYDLWWN-----PAVEEQATGRAHRIGQKRVVQVFRMITKG 1023

Query: 175  TIDELVL 181
            TI+E + 
Sbjct: 1024 TIEERIF 1030


>gi|323456317|gb|EGB12184.1| hypothetical protein AURANDRAFT_19973 [Aureococcus anophagefferens]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           ARL +      T+      I++++     + F    + G G+NL +    ++ F + W+ 
Sbjct: 114 ARLARRLDGDTTVTARQALIEDFSSSDAVVFFLSVRAAGVGINL-HAATRVILFDVSWNP 172

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +  Q I      R  + G +R VFVY L+A  T++E V  R   K  +
Sbjct: 173 ADDAQAI-----ARAHRFGQERPVFVYRLVAAGTVEERVFNRQIAKGAV 216


>gi|55963369|emb|CAI11899.1| novel protein containing an SNF2 family N-terminal domain and a
            Helicase conserved C-terminal domain [Danio rerio]
          Length = 1582

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1211 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1262

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1263 ERILQRAKEKSEIQRMVISG 1282


>gi|329943269|ref|ZP_08292043.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|313848419|emb|CBY17423.1| putative DNA helicase-related protein [Chlamydophila psittaci RD1]
 gi|325506669|gb|ADZ18307.1| putative DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814816|gb|EGF84806.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|328915108|gb|AEB55941.1| helicase, Snf2/Rad54 family [Chlamydophila psittaci 6BC]
          Length = 1205

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1090 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLMTEDTLE 1143

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D +++      +H+
Sbjct: 1144 ERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|297696366|ref|XP_002825369.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA helicase INO80 complex
            homolog 1-like [Pongo abelii]
          Length = 1537

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1146 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1199

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1200 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1232


>gi|310795007|gb|EFQ30468.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 852

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 690 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 743

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 744 IFQRQSHKQSLSSCVVDS 761


>gi|113676533|ref|NP_001038584.1| INO80 complex homolog 1 [Danio rerio]
 gi|56207300|emb|CAI20655.1| novel protein similar to H.sapiens INOC1, INO80 complex homolog 1 (S.
            cerevisiae) (INOC1) [Danio rerio]
          Length = 1552

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1178 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1229

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1230 ERILQRAKEKSEIQRMVISG 1249


>gi|6330933|dbj|BAA86573.1| KIAA1259 protein [Homo sapiens]
          Length = 1561

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1170 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1223

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1224 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256


>gi|291403204|ref|XP_002718017.1| PREDICTED: INO80 complex homolog 1 [Oryctolagus cuniculus]
          Length = 1559

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1168 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1221

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1222 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|114656423|ref|XP_510320.2| PREDICTED: INO80 complex homolog 1 [Pan troglodytes]
          Length = 1556

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1165 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1218

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1219 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|38708321|ref|NP_060023.1| putative DNA helicase INO80 complex homolog 1 [Homo sapiens]
 gi|114149322|sp|Q9ULG1|INO80_HUMAN RecName: Full=Putative DNA helicase INO80 complex homolog 1;
            Short=hINO80
 gi|119612875|gb|EAW92469.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|119612876|gb|EAW92470.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|148921591|gb|AAI46786.1| INO80 protein [Homo sapiens]
 gi|168269776|dbj|BAG10015.1| DNA helicase INO80 complex homolog 1 [synthetic construct]
          Length = 1556

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1165 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1218

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1219 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|317063195|ref|ZP_07927680.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313688871|gb|EFS25706.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 926

 Score = 43.9 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+     +   + K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 807 GSTKDRQSLVDRFQKDNKYKVFIMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 860

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  R VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 861 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 906


>gi|257468947|ref|ZP_05633041.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 915

 Score = 43.9 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+     +   + K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 796 GSTKDRQSLVDRFQKDNKYKVFIMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 849

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  R VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 850 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 895


>gi|149692054|ref|XP_001503533.1| PREDICTED: INO80 complex homolog 1 (S. cerevisiae) [Equus caballus]
          Length = 1561

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1170 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1223

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1224 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256


>gi|52082146|ref|YP_080937.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52787537|ref|YP_093366.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|319648023|ref|ZP_08002240.1| YwqA protein [Bacillus sp. BT1B_CT2]
 gi|52005357|gb|AAU25299.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52350039|gb|AAU42673.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|317389658|gb|EFV70468.1| YwqA protein [Bacillus sp. BT1B_CT2]
          Length = 921

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 20/139 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           ++ ++EK+   P+      N  L++L++        DK    ++++   + P+L     +
Sbjct: 778 MKRLLEKSFGEPV---KFLNGSLSKLER--------DK---MVEQFQNKEFPILILSLKA 823

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    N ++ +  WW+       +E     R  + G KR V V+ LI   TI+E
Sbjct: 824 GGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTIEE 877

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            + Q L +K ++ D ++ +
Sbjct: 878 KIDQMLESKQSLNDQIIQS 896


>gi|119612877|gb|EAW92471.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_c [Homo sapiens]
          Length = 1616

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1196 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1249

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1250 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1282


>gi|62185500|ref|YP_220285.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
 gi|62148567|emb|CAH64339.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
          Length = 1206

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1090 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLMTEDTLE 1143

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D +++      +H+
Sbjct: 1144 ERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|308176367|ref|YP_003915773.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307743830|emb|CBT74802.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1115

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQR 157
            I+++ EG+ PL      + G GLNL    +       WW+     Q I+R   IG TRQ 
Sbjct: 1007 IEQFKEGEAPLFLISLKAGGFGLNLTEA-DYCFLLDPWWNPAVEAQAIDRTHRIGQTRQ- 1064

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTK----STIQD 192
                   V VY +I+Q TI+E V+    +K    ST+ D
Sbjct: 1065 -------VMVYRMISQGTIEEKVVALQESKRKLISTVMD 1096


>gi|73999785|ref|XP_535436.2| PREDICTED: similar to yeast INO80-like protein isoform 1 [Canis
            familiaris]
          Length = 1519

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1128 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1181

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1182 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1214


>gi|329904224|ref|ZP_08273705.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
 gi|327548098|gb|EGF32821.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
          Length = 1101

 Score = 43.9 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    ++ + EG++PL      + G GLNL    + ++ +  WW+     Q  + 
Sbjct: 977  GDTTDR-ATPVRRFQEGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATD- 1033

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G ++ VFVY LI   +I+E ++     K+ + + +L+
Sbjct: 1034 ----RAHRLGQEKPVFVYKLIVAGSIEEKIVALQDKKAALAEGILS 1075


>gi|327259622|ref|XP_003214635.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Anolis
            carolinensis]
          Length = 1421

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1169 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1222

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1223 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255


>gi|114562478|ref|YP_749991.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
 gi|114333771|gb|ABI71153.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
          Length = 1070

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 80   DLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +L RL  ++ +  G+T D+    I  + EG   +      + G GLNL    + ++ F  
Sbjct: 940  ELKRLTISYSKLTGQTRDRQ-TQIDAFQEGDNSVFLISLKAGGTGLNLT-AADTVIHFDP 997

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+        ER    R  + G    VFVY LIAQ T++E + +  + K  + D +L+
Sbjct: 998  WWN-----PAAERQATDRAHRIGQLNPVFVYKLIAQGTVEEKIQEMQQHKQGLADSILS 1051


>gi|301754870|ref|XP_002913258.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Ailuropoda melanoleuca]
 gi|281338216|gb|EFB13800.1| hypothetical protein PANDA_001057 [Ailuropoda melanoleuca]
          Length = 1561

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1170 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1223

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1224 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256


>gi|326920472|ref|XP_003206496.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Meleagris gallopavo]
          Length = 1545

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1168 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1221

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1222 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|297296191|ref|XP_002804786.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Macaca
            mulatta]
          Length = 1478

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1087 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1140

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1141 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1173


>gi|73999781|ref|XP_849183.1| PREDICTED: similar to yeast INO80-like protein isoform 3 [Canis
            familiaris]
          Length = 1560

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1169 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1222

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1223 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255


>gi|156039515|ref|XP_001586865.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980]
 gi|154697631|gb|EDN97369.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 861

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 699 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 752

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 753 IFQRQSHKQSLSSCVVDS 770


>gi|296214144|ref|XP_002753574.1| PREDICTED: putative DNA helicase INO80 complex homolog 1 [Callithrix
            jacchus]
          Length = 1556

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1166 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1219

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1220 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1252


>gi|119612874|gb|EAW92468.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_a [Homo
           sapiens]
          Length = 1313

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
           N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 893 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 946

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 947 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 979


>gi|73999783|ref|XP_858164.1| PREDICTED: similar to yeast INO80-like protein isoform 4 [Canis
            familiaris]
          Length = 1584

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1193 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1246

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1247 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1279


>gi|150388431|ref|YP_001318480.1| non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
 gi|149948293|gb|ABR46821.1| Non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
          Length = 1141

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+NEGK  +      + G GLNL  G + ++ F  WW+       +E     R  + G
Sbjct: 1033 VKEFNEGKGSIFLISLKAGGTGLNLT-GADTVIHFDPWWN-----PAVEDQATDRAYRIG 1086

Query: 161  FKRAVFVYYLIAQNTIDELVLQ 182
             K  V V   IAQ TI+E + +
Sbjct: 1087 QKNKVHVMKFIAQGTIEEKIFK 1108


>gi|296414511|ref|XP_002836943.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632788|emb|CAZ81134.1| unnamed protein product [Tuber melanosporum]
          Length = 1444

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++TI+
Sbjct: 816 AGGLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQKAHVMVYRLVSKDTIE 869

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E VL+R R K  ++ L+++
Sbjct: 870 EEVLERARNKMILEHLVIS 888


>gi|71279360|ref|YP_270079.1| Snf2 family protein [Colwellia psychrerythraea 34H]
 gi|71145100|gb|AAZ25573.1| Snf2 family protein [Colwellia psychrerythraea 34H]
          Length = 1134

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++  G++P+      + G GLNL    + ++ F  WW+       +E     R  + G
Sbjct: 1022 VDKFQRGEVPVFLISLRAGGVGLNLT-AADTVIHFDPWWN-----PAVENQATDRAYRIG 1075

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LI +N+I+E + +  + K+ +   LL+
Sbjct: 1076 QNKPVFVYKLIIENSIEEKIQKIQQNKAELAKALLS 1111


>gi|311244967|ref|XP_003121636.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Sus
            scrofa]
          Length = 1566

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1175 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1228

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1229 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1261


>gi|158261765|dbj|BAF83060.1| unnamed protein product [Homo sapiens]
          Length = 1307

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1165 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1218

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1219 --VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|317153779|ref|YP_004121827.1| SNF2-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944030|gb|ADU63081.1| SNF2-related protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1069

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y
Sbjct: 969  IPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRIGQKRQVFAY 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
             +I QNT++E +L+    K  + + ++   +ALK  T
Sbjct: 1023 KMICQNTVEERILKLQEQKKDVAESIIPGQSALKGLT 1059


>gi|319425773|gb|ADV53847.1| SNF2-related protein [Shewanella putrefaciens 200]
          Length = 1073

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  + +G  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDRFQDGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQNLADSILEGKGK 1058


>gi|62234443|ref|NP_080850.2| putative DNA helicase INO80 complex homolog 1 [Mus musculus]
 gi|114149323|sp|Q6ZPV2|INO80_MOUSE RecName: Full=Putative DNA helicase INO80 complex homolog 1
 gi|123232376|emb|CAM22022.1| INO80 homolog (S. cerevisiae) [Mus musculus]
 gi|123236330|emb|CAM25341.1| INO80 homolog (S. cerevisiae) [Mus musculus]
          Length = 1559

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1183 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1234

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1235 ERILQRAKEKSEIQRMVISG 1254


>gi|255507152|ref|ZP_05382791.1| SWI/SNF family helicase [Chlamydia trachomatis D(s)2923]
          Length = 1199

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|323359978|ref|YP_004226374.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
 gi|323276349|dbj|BAJ76494.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
          Length = 983

 Score = 43.9 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A L  A   G T  +    +  +  G+ P+      + G GL L     + V    WW
Sbjct: 854 DAAGLAYAHLDGSTARRGD-VVAGFRAGEAPVFLISLKAGGFGLTLTEADYVFVL-DPWW 911

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q I+R       + G  ++VFVY LIA  TI+E VL   R K+ + D +++
Sbjct: 912 NPAAEAQAIDR-----AHRIGQDKSVFVYRLIAAGTIEEKVLALQRRKAALFDAVID 963


>gi|293358005|ref|XP_230473.5| PREDICTED: yeast INO80-like protein [Rattus norvegicus]
          Length = 1559

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1183 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1234

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1235 ERILQRAKEKSEIQRMVISG 1254


>gi|15836368|ref|NP_300892.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
 gi|8979209|dbj|BAA99043.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
          Length = 1215

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y LI ++T++
Sbjct: 1092 AAGTGINLT-AGNVVIMYDRWWNPAKEIQALDRV-----HRIGQKNTVFIYKLITEDTLE 1145

Query: 178  ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            E +   +  K  + D ++ +     +H+
Sbjct: 1146 ERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|120599532|ref|YP_964106.1| SNF2-like protein [Shewanella sp. W3-18-1]
 gi|120559625|gb|ABM25552.1| SNF2-related protein [Shewanella sp. W3-18-1]
          Length = 1073

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  + +G  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDRFQDGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQNLADSILEGKGK 1058


>gi|289525600|emb|CBJ15078.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis Sweden2]
 gi|296435160|gb|ADH17338.1| SWI/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296438880|gb|ADH21033.1| SWI/SNF family helicase [Chlamydia trachomatis E/11023]
          Length = 1199

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|255348934|ref|ZP_05380941.1| SWI/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503474|ref|ZP_05381864.1| SWI/SNF family helicase [Chlamydia trachomatis 70s]
          Length = 1199

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|296122550|ref|YP_003630328.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296014890|gb|ADG68129.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 1112

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
            H +E+  E  K L  +  +  +   IV  H   D A +   +  G+T D+  C  +  N+
Sbjct: 954  HLEELVGEGHKTL--VFSQFTSMLAIVRKHL--DRAGITYEYLDGQTRDRKECVERFQND 1009

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKR 163
                +      + G GLNL     + +    WW+     Q I+R   +G TRQ       
Sbjct: 1010 KDCGVFLISLKAGGLGLNLTAADYVFIL-DPWWNPAVETQAIDRAHRVGQTRQ------- 1061

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VF Y LI +NT++E + +  + K  + D +L
Sbjct: 1062 -VFAYRLICKNTVEEKIAELQKQKRELADAIL 1092


>gi|109470653|ref|XP_001080838.1| PREDICTED: yeast INO80-like protein-like [Rattus norvegicus]
          Length = 1559

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1183 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1234

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1235 ERILQRAKEKSEIQRMVISG 1254


>gi|188532517|ref|YP_001906314.1| Putative helicase [Erwinia tasmaniensis Et1/99]
 gi|188027559|emb|CAO95406.1| Putative helicase [Erwinia tasmaniensis Et1/99]
          Length = 890

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 772 GSTRDRNE-PVRRFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 829

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA +TI+E ++   + K+ + + +L+
Sbjct: 830 A-----YRLGQDKPVFVYKLIAADTIEEKIVALQQQKADLAEEILS 870


>gi|15605284|ref|NP_220070.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328995|gb|AAC68157.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296437016|gb|ADH19186.1| SWI/SNF family helicase [Chlamydia trachomatis G/11222]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|237804906|ref|YP_002889060.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
 gi|231273206|emb|CAX10119.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|156549903|ref|XP_001601964.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 899

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + L+ F   W+     Q + RI      + G KR+VF+Y L+   TI+E 
Sbjct: 716 GVGLNL-VGASRLILFDSDWNPANDAQAMARIW-----RDGQKRSVFIYRLLTTGTIEEK 769

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR  +K+ + + +++A
Sbjct: 770 IYQRQISKTGLSEAVVDA 787


>gi|146292471|ref|YP_001182895.1| SNF2-like protein [Shewanella putrefaciens CN-32]
 gi|145564161|gb|ABP75096.1| SNF2-related protein [Shewanella putrefaciens CN-32]
          Length = 1073

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  + +G  P+      + G GLNL    + ++ +  WW+    +Q  +R       + G
Sbjct: 965  IDRFQDGDTPVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + VFVY LIA+ T++E + +  + K  + D +L    K
Sbjct: 1019 QDKPVFVYKLIAEGTVEEKIQEMQQHKQNLADSILEGKGK 1058


>gi|126348422|emb|CAJ90145.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
          Length = 976

 Score = 43.5 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 862 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHFDRWWN-----PAVEAQATDRAYRIG 915

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ L+A+ T+++ +   L  K  + D +L A
Sbjct: 916 QTRPVQVHRLVAEGTVEDRIAALLHRKRKLADAVLGA 952


>gi|300708513|ref|XP_002996434.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
 gi|239605736|gb|EEQ82763.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
          Length = 858

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T+ +W  G   +      + G G+NL    + ++F+   W+    QQ ++R       + 
Sbjct: 759 TVNDWQTGDKFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AYRI 812

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V VY LI +NTI+E V+++   K  +Q +++  
Sbjct: 813 GQTKDVTVYRLITKNTIEERVIEKATHKGNLQKMVIKG 850


>gi|166154770|ref|YP_001654888.1| helicase [Chlamydia trachomatis 434/Bu]
 gi|166155645|ref|YP_001653900.1| helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336044|ref|ZP_07224288.1| helicase [Chlamydia trachomatis L2tet1]
 gi|165930758|emb|CAP04255.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis 434/Bu]
 gi|165931633|emb|CAP07209.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|76789292|ref|YP_328378.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|237802984|ref|YP_002888178.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
 gi|76167822|gb|AAX50830.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|231274218|emb|CAX11012.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|257438160|ref|ZP_05613915.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199491|gb|EEU97775.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 1119

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 24/185 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +         ++K   C++L   AV   E  H   +  +    LE++ ++ +A
Sbjct: 931  REICCDPRLIADNWTGGSAKLDACIELVTSAV---ESGHRILLFSQFTSMLELLAKRLDA 987

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
              +    HF      LQ + P+    +     ++ +N G+  +      + G GLNL   
Sbjct: 988  EGV---SHFT-----LQGSTPKPVRAE----LVRRFNGGEASVFLISLRAGGTGLNLT-A 1034

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW++    Q  +R       + G +  V VY LI Q+TI+E +++  + K 
Sbjct: 1035 ADIVIHYDPWWNVAAQNQATDRA-----YRIGQQNPVQVYKLITQDTIEEKIVELQQAK- 1088

Query: 189  TIQDL 193
              QDL
Sbjct: 1089 --QDL 1091


>gi|329664944|ref|NP_001192313.1| putative DNA helicase INO80 complex homolog 1 [Bos taurus]
 gi|296483346|gb|DAA25461.1| brahma-like [Bos taurus]
          Length = 1566

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1190 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1241

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR + KS IQ ++++ 
Sbjct: 1242 ERILQRAKEKSEIQRMVISG 1261


>gi|331003253|ref|ZP_08326760.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330412906|gb|EGG92286.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1137

 Score = 43.5 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N     +      + G GLNL  G +I++ +  WW+     Q  +R       + G
Sbjct: 1028 VNDFNNDDTNVFLISLKAGGTGLNL-VGADIVIHYDPWWNFAAQNQATDR-----AHRIG 1081

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K  V VY LI + TI+E +++   +K  + D +LN
Sbjct: 1082 QKNNVTVYRLITKGTIEERIVKLQESKKDLADRVLN 1117


>gi|220904807|ref|YP_002480119.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869106|gb|ACL49441.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1091

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 987  NSPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1040

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI QNT++E +L+    K  + + ++
Sbjct: 1041 VFSYKLICQNTVEEKILKLQEAKRGVAEAII 1071


>gi|295835221|ref|ZP_06822154.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825374|gb|EDY45121.2| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 923

 Score = 43.5 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 810 VRRFQDGEVPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVEAQATDRAHRIG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ TI++ +   + +K  + D +L +
Sbjct: 864 QTRPVQVHRLIAEGTIEDRIAALMESKRELADAVLGS 900


>gi|297748685|gb|ADI51231.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749565|gb|ADI52243.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1202

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1092 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1145

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1146 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1179


>gi|212702386|ref|ZP_03310514.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
 gi|212674185|gb|EEB34668.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
          Length = 1085

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 981  NSPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1034

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI QNT++E +L+    K  + + ++
Sbjct: 1035 VFSYKLICQNTVEEKILKLQEAKRGVAEAII 1065


>gi|325661424|ref|ZP_08150050.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472373|gb|EGC75585.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 493

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWK--EVHDEKIKALE 60
           K QR+ Y D+  +  E  N  SK   T K ++L      +  +K+    +    K   LE
Sbjct: 295 KNQRKYYNDILNDIKEHINEWSKFEFTAKLMKLREVVSGFVIQKNGDVTDFKTNKDNILE 354

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
             + +     +IV   F  ++ +L + F       +T ++D   I+ +  G I LLFAHP
Sbjct: 355 DTLNEIGDKQVIVWCQFIHEIEKLAEKFDGTALTSKTKNRDD-IIRSFKNGDIKLLFAHP 413

Query: 117 ASCGHG---LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              G G    N  Y     +++SL +  EE +Q  +RI     R     +  ++  L  +
Sbjct: 414 KLLGKGATFTNCTYN----IYYSLSFSYEEFKQSQDRI----HRIGQANKCTYI-ILQGK 464

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           NTID+ +   L+ K    D L
Sbjct: 465 NTIDKRIYNSLQRKGNAVDEL 485


>gi|296436088|gb|ADH18262.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9768]
 gi|296437949|gb|ADH20110.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/11074]
 gi|297140449|gb|ADH97207.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9301]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|108763874|ref|YP_633501.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467754|gb|ABF92939.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1083

 Score = 43.5 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 22/162 (13%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            ++K  + LQL    V    E H   V  +  + LE++ ++A             D   L+
Sbjct: 913  SAKVERFLQLVEDLV---AEGHRALVFSQFTEMLELLKQEA-------------DKKGLR 956

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +  GRT D+     +  N    PL F    + G GLNL    + ++ F  WW+     
Sbjct: 957  YLYLDGRTKDRMGKVDEYNNPDGPPLFFISLKAGGTGLNLT-AADYVIHFDPWWN----- 1010

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +E     R  + G  RAV  Y LI + T++E +L   R K
Sbjct: 1011 PAVEDQATDRTHRIGQTRAVISYKLITRGTVEEKILALQRRK 1052


>gi|302823829|ref|XP_002993563.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
 gi|300138630|gb|EFJ05392.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
          Length = 852

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   R+      + G K+ V++Y  +A  TI+E 
Sbjct: 588 GCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRFLATGTIEEK 641

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V QR  +K  +Q ++    K E
Sbjct: 642 VYQRQISKEGLQKVISGDSKAE 663


>gi|255311373|ref|ZP_05353943.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276]
 gi|255317674|ref|ZP_05358920.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276s]
          Length = 1199

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++
Sbjct: 1089 AAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLVTEDTLE 1142

Query: 178  ELV-------LQRLRTKSTIQDL-LLNALKKETI 203
            E +       ++ L   +T QD  +L+ L +E +
Sbjct: 1143 EHIHYLIEKKMRLLNQVTTTQDSNILHVLNREDL 1176


>gi|169830699|ref|YP_001716681.1| helicase domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637543|gb|ACA59049.1| helicase domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1147

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q++ EG+I +L A  A+ G G+NLQ   NIL  + + W+    +Q + RI      + G 
Sbjct: 548 QQFREGEIQVLVATEAA-GEGINLQVC-NILFNYDIPWNPNRLEQRMGRI-----HRYGQ 600

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           ++   ++  +A NTI+  VLQRL  K   I+D L
Sbjct: 601 RKDCLIFNFVATNTIEGRVLQRLLEKLQEIRDAL 634


>gi|29828520|ref|NP_823154.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605624|dbj|BAC69689.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 962

 Score = 43.5 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+L     + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 849 VDRFQSGTTPVLVLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEEQATDRAYRIG 902

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ + + L  K  + D +L +
Sbjct: 903 QTQPVQVHRLITEGTVEDRIAEMLEAKRALADAILGS 939


>gi|330797032|ref|XP_003286567.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
 gi|325083472|gb|EGC36924.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
          Length = 1281

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 18/104 (17%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGV 153
           + EWN    P    +L  H  + G G+NLQ    +++F S W    DL+  Q    RIG 
Sbjct: 851 VVEWNRPDSPFWIFVLSTH--AGGLGMNLQTADTVIIFDSDWNPQMDLQ-AQDRCHRIGQ 907

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           T         AV VY LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 908 TN--------AVNVYRLISANSIEEKILERATDKLEIDAKIIQA 943


>gi|302408325|ref|XP_003001997.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
 gi|261358918|gb|EEY21346.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
          Length = 857

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 695 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 748

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 749 IFQRQSHKQSLSSCVVDS 766


>gi|37360298|dbj|BAC98127.1| mKIAA1259 protein [Mus musculus]
          Length = 1196

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 820 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 871

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +LQR + KS IQ ++++ 
Sbjct: 872 ERILQRAKEKSEIQRMVISG 891


>gi|195158016|ref|XP_002019890.1| GL11967 [Drosophila persimilis]
 gi|194116481|gb|EDW38524.1| GL11967 [Drosophila persimilis]
          Length = 220

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 13/78 (16%)

Query: 131 ILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           +++F+   W+    QQ ++R   +G T+Q        V VY LI + TI+E +LQR R K
Sbjct: 2   LVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIEERILQRAREK 53

Query: 188 STIQDLLLNA--LKKETI 203
           S IQ ++++    K +T+
Sbjct: 54  SEIQRMVISGGNFKPDTL 71


>gi|300718555|ref|YP_003743358.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
 gi|299064391|emb|CAX61511.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 91  GRTLDK-DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T D+ +P  ++ + EG++P+      + G GLNL    + ++ +  WW+     Q  +
Sbjct: 758 GSTRDRIEP--VRRFQEGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATD 814

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + G  + VFVY LIA  +I+E ++     K+ + D +L
Sbjct: 815 RA-----YRLGQDKPVFVYKLIAAGSIEEKIVALQGQKAELADSIL 855


>gi|288962950|ref|YP_003453244.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
 gi|288915216|dbj|BAI76700.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
          Length = 1172

 Score = 43.5 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 80   DLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +L RL   F +  G T D++   +  +  G++PL      + G GLNL    + ++ +  
Sbjct: 1038 ELERLAIPFVELTGDTRDRE-TPVNRFQAGEVPLFLISLKAGGTGLNLT-AADTVIHYDP 1095

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            WW+       +E     R  + G  + VFVY L+   T++E ++Q
Sbjct: 1096 WWN-----PAVEDQATDRAHRIGQDKPVFVYKLVTTGTVEERMVQ 1135


>gi|237749385|ref|ZP_04579865.1| helicase [Oxalobacter formigenes OXCC13]
 gi|229380747|gb|EEO30838.1| helicase [Oxalobacter formigenes OXCC13]
          Length = 1125

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 71   IIVAYHFNSDLARLQ-----KAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I+V   F S L+ ++     ++ P     G T D+    I+ + +GK+ +      + G 
Sbjct: 969  ILVFSQFTSMLSLIETELKNRSIPYEILTGDTTDR-ASAIRNFQDGKVSVFLISLKAGGV 1027

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    + ++ +  WW+       +E     R  + G  + VFVY LIA+ T++E + 
Sbjct: 1028 GLNLT-AADTVIHYDPWWN-----PAVENQATDRAWRIGQDKPVFVYKLIAKGTLEEKIQ 1081

Query: 182  QRLRTKSTIQDLLLNALKKETIHV 205
            +  + K+ +   +L++ + + + +
Sbjct: 1082 ELQQRKADLATAMLSSGQAQHVQI 1105


>gi|226943215|ref|YP_002798288.1| helicase protein [Azotobacter vinelandii DJ]
 gi|226718142|gb|ACO77313.1| helicase protein [Azotobacter vinelandii DJ]
          Length = 872

 Score = 43.5 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++E+  G++P+      + G GLNL    + ++ F  WW+     Q  +     R  + G
Sbjct: 761 VEEFQAGRVPVFLISLKAGGAGLNLT-AADTVIHFDPWWNPAAEAQASD-----RAYRIG 814

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLLLNALKKE 201
             + VFVY LIA+ +++E +    + K+ +   LL  A++ E
Sbjct: 815 QDKPVFVYRLIARGSVEEKIQHLQKAKAELAHGLLEGAIQGE 856


>gi|303327511|ref|ZP_07357952.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862451|gb|EFL85384.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 1085

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 981  NSPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1034

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI QNT++E +L+    K  + + ++
Sbjct: 1035 VFSYKLICQNTVEEKILKLQEAKRGVAEAII 1065


>gi|189211141|ref|XP_001941901.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977994|gb|EDU44620.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 812

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + ++N+ + P    LL +    CG  LNL  G N LV F   W+    QQ + R+     
Sbjct: 622 VDKFNDPESPEFVFLLSSKAGGCG--LNL-IGANRLVLFDPDWNPAADQQALARVW---- 674

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+  FVY  I   TI+E V QR   K ++   ++++
Sbjct: 675 -RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDS 714


>gi|315648297|ref|ZP_07901398.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315276943|gb|EFU40286.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 1109

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +NEG+  +      + G GLNL  G + ++ + LWW+    QQ  +R       + G 
Sbjct: 999  ERFNEGEREVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQATDR-----AHRIGQ 1052

Query: 162  KRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLL 194
            K+ V V  L+AQ+TI D++   + + K+ I++L+
Sbjct: 1053 KKVVQVIRLVAQDTIEDKMYALQQKKKNLIEELV 1086


>gi|330930041|ref|XP_003302867.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
 gi|311321495|gb|EFQ89043.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
          Length = 812

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + ++N+ + P    LL +    CG  LNL  G N LV F   W+    QQ + R+     
Sbjct: 622 VDKFNDPESPEFVFLLSSKAGGCG--LNL-IGANRLVLFDPDWNPAADQQALARVW---- 674

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+  FVY  I   TI+E V QR   K ++   ++++
Sbjct: 675 -RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDS 714


>gi|289706474|ref|ZP_06502828.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
 gi|289556793|gb|EFD50130.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
          Length = 1143

 Score = 43.5 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D   ++ A+  G T  +    I+ + EG+ P+      + G GL L     + +    WW
Sbjct: 1007 DHLEIEHAYLDGSTRGRAE-VIRGFREGEAPVFLISLKAGGFGLTLTEADYVFLM-DPWW 1064

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     Q ++R       + G +R V VY L+++ TI+E VL+  R K+ +   L++
Sbjct: 1065 NPAAEAQAVDR-----AHRIGQERTVMVYRLVSEGTIEEKVLELQRRKAELFGALMD 1116


>gi|19173110|ref|NP_597661.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
 gi|19168777|emb|CAD26296.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
          Length = 1256

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 31/148 (20%)

Query: 55   KIKALEVIIEKANA----APIIVAYHFNSDL---------------ARLQKAFPQG-RTL 94
            K+KALE II         + I++ + F S +               +RL  + P   RT 
Sbjct: 1084 KVKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKKYKFKYSRLDGSVPSAART- 1142

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                   +E+N G   +LF      G GLNL     ++++   W    + Q M       
Sbjct: 1143 ----KIAEEFNTGTTQMLFLTTQVGGLGLNLTGADTVVMYEHDWNPFNDLQAM------D 1192

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            R  + G KR V V+  IA+NT++E V+ 
Sbjct: 1193 RAHRIGQKRTVNVFRFIARNTLEEKVMN 1220


>gi|146297575|ref|YP_001181346.1| helicase domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411151|gb|ABP68155.1| helicase domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +N G+  +      + G GLNL  G ++++ + LWW+       +E   + R  + G
Sbjct: 68  VNRFNGGEKQVFLVSLKAGGFGLNLT-GADVVILYDLWWN-----PAVENQAMDRAHRIG 121

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +V V+ LI +NTI+E + +  + K  + D ++++
Sbjct: 122 QENSVQVFRLITKNTIEERIFELQQKKKDLFDQVVSS 158


>gi|70954393|ref|XP_746245.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56526791|emb|CAH81164.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 1024

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D +  + QE +  +  +      S G GLNLQ    +++F S   D   HQ +     + 
Sbjct: 770 DINDLSNQELDTDEAMIFILSTRSGGLGLNLQAADTVIIFDS---DFNPHQDI---QAMC 823

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G K  V V+  I  ++++ELV QR + K  I D ++ A
Sbjct: 824 RCHRIGQKNVVKVFRFITLSSVEELVFQRAKDKLNINDKVIQA 866


>gi|318059790|ref|ZP_07978513.1| SNF2-like protein [Streptomyces sp. SA3_actG]
 gi|318075191|ref|ZP_07982523.1| SNF2-like protein [Streptomyces sp. SA3_actF]
          Length = 951

 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 838 VRRFQDGEVPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVEAQATDRAHRIG 891

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V V+ LIA+ TI++ +   + +K  + D +L
Sbjct: 892 QTRPVQVHRLIAEGTIEDRIAALMESKRELADAVL 926


>gi|302523347|ref|ZP_07275689.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
 gi|302432242|gb|EFL04058.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
          Length = 968

 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 855 VRRFQDGEVPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVEAQATDRAHRIG 908

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V V+ LIA+ TI++ +   + +K  + D +L
Sbjct: 909 QTRPVQVHRLIAEGTIEDRIAALMESKRELADAVL 943


>gi|302883714|ref|XP_003040756.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
 gi|256721646|gb|EEU35043.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 643 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 696

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 697 IFQRQSHKQSLSSCVVDS 714


>gi|326774662|ref|ZP_08233927.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654995|gb|EGE39841.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1039

 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +  G+ P+      + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 925  VNRFQSGEAPVFLLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEAQATDRAYRIG 978

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V V+ LIA+ TI++ + + L  K  + D +L +
Sbjct: 979  QTQPVQVHRLIAEGTIEDRIAEMLTRKQGLADAVLGS 1015


>gi|182434140|ref|YP_001821859.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462656|dbj|BAG17176.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1006

 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+ P+      + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 892 VNRFQSGEAPVFLLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEAQATDRAYRIG 945

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ TI++ + + L  K  + D +L +
Sbjct: 946 QTQPVQVHRLIAEGTIEDRIAEMLTRKQGLADAVLGS 982


>gi|29828134|ref|NP_822768.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605236|dbj|BAC69303.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 979

 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  + +    +  + EG++P+      + G GLNL    ++ V +  WW+       +E 
Sbjct: 855 GTPVHEREAMVHRFQEGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEA 908

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G  R V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 909 QATDRAYRIGQTRPVQVHRLIAEGTIEDRIADMLLRKRELADAVLGS 955


>gi|322707957|gb|EFY99534.1| recombinational repair protein [Metarhizium anisopliae ARSEF 23]
          Length = 807

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 645 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 698

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 699 IFQRQSHKQSLSSCVVDS 716


>gi|255555479|ref|XP_002518776.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
 gi|223542157|gb|EEF43701.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
          Length = 940

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   RI      + G K+ V++Y  ++  TI+E 
Sbjct: 625 GCGLNL-IGGNRLVLFDPDWNPANDKQAAARIW-----RDGQKKRVYIYRFLSTGTIEEK 678

Query: 180 VLQRLRTKSTIQDLLLNALKKETI 203
           V QR  +K  +Q ++ +     TI
Sbjct: 679 VYQRQMSKEGLQKVIQHEQNDSTI 702


>gi|37590263|gb|AAH59235.1| Ino80 protein [Mus musculus]
          Length = 1088

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 712 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 763

Query: 178 ELVLQRLRTKSTIQDLLLNA--LKKETI 203
           E +LQR + KS IQ ++++    K +T+
Sbjct: 764 ERILQRAKEKSEIQRMVISGGNFKPDTL 791


>gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbaspirillum seropedicae SmR1]
 gi|300076654|gb|ADJ66053.1| superfamily II helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  + + + PL+     + G GLNL    + +V    WW+       +E   + R  + G
Sbjct: 709 IAGFQQEQTPLMLVSLKAGGVGLNLT-AADTVVLVDPWWN-----PAVEEQAIARAHRLG 762

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R VFVY L+ + +I+E +L+    KS + + +L
Sbjct: 763 QQRQVFVYKLVIEGSIEERLLELQARKSALAEGML 797


>gi|150865881|ref|XP_001385272.2| helicase [Scheffersomyces stipitis CBS 6054]
 gi|149387137|gb|ABN67243.2| helicase [Scheffersomyces stipitis CBS 6054]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + ++N+  I +      S G GLNL  G + L+ F   W+     Q + RI      + G
Sbjct: 575 VNQFNKSNINVFLLSSKSGGMGLNL-VGASRLILFDNDWNPSVDLQSMSRI-----HRDG 628

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             R  F+Y ++   TIDE + QR   KS +    L+   + T  V
Sbjct: 629 QTRPCFIYRILTTGTIDEKIFQRQLMKSKLSSKFLDNESQSTSDV 673


>gi|75759628|ref|ZP_00739713.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492873|gb|EAO56004.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 168

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 62  FNEGEGELFLISLKAGGTGLNL-TGADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 115

Query: 164 AVFVYYLIAQNTIDE 178
            V V  L+AQ TI+E
Sbjct: 116 TVQVIKLVAQGTIEE 130


>gi|322706938|gb|EFY98517.1| chromo domain-containing protein 1 [Metarhizium anisopliae ARSEF
           23]
          Length = 1668

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G KR V +Y L+++ T++
Sbjct: 856 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKRPVNIYRLVSKETVE 909

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E VL+R R K  ++ L + A
Sbjct: 910 EEVLERARNKLLLEYLTIQA 929


>gi|329940611|ref|ZP_08289892.1| helicase [Streptomyces griseoaurantiacus M045]
 gi|329300672|gb|EGG44569.1| helicase [Streptomyces griseoaurantiacus M045]
          Length = 940

 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + EG  P+L     + G GLNL   G++ V    WW+       +E     R  + G
Sbjct: 826 VDRFQEGATPVLVLSLKAAGTGLNLTRAGHV-VHVDRWWN-----PAVEEQATDRAYRIG 879

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LI + T+++ +   LR K  + D +L +
Sbjct: 880 QTQPVQVHRLITEGTVEDRIDDMLRAKRALADAILGS 916


>gi|322701089|gb|EFY92840.1| chromo domain-containing protein 1 [Metarhizium acridum CQMa 102]
          Length = 1663

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G KR V +Y L+++ T++
Sbjct: 868 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKRPVNIYRLVSKETVE 921

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E VL+R R K  ++ L + A
Sbjct: 922 EEVLERARNKLLLEYLTIQA 941


>gi|297190045|ref|ZP_06907443.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150349|gb|EFH30576.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 700

 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 586 VNRFQNGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 639

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ TI++ + + L  K  + D +L A
Sbjct: 640 QDRPVQVHRLIAEGTIEDRIARMLERKKDLADSVLGA 676


>gi|46127169|ref|XP_388138.1| hypothetical protein FG07962.1 [Gibberella zeae PH-1]
          Length = 856

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 694 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 747

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 748 IFQRQSHKQSLSSCVVDS 765


>gi|194899988|ref|XP_001979539.1| GG15997 [Drosophila erecta]
 gi|190651242|gb|EDV48497.1| GG15997 [Drosophila erecta]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 11/70 (15%)

Query: 131 ILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           +++F+   W+    QQ ++R   +G T+Q        V VY LI + TI+E +LQR R K
Sbjct: 1   MVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIEERILQRAREK 52

Query: 188 STIQDLLLNA 197
           S IQ ++++ 
Sbjct: 53  SEIQRMVISG 62


>gi|46125449|ref|XP_387278.1| hypothetical protein FG07102.1 [Gibberella zeae PH-1]
          Length = 1627

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G KR V +Y L+++ T++
Sbjct: 841 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKRPVNIYRLVSKETVE 894

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E VL+R R K  ++ L + A
Sbjct: 895 EEVLERARNKLLLEYLTIQA 914


>gi|257081744|ref|ZP_05576105.1| Snf2 family protein [Enterococcus faecalis E1Sol]
 gi|256989774|gb|EEU77076.1| Snf2 family protein [Enterococcus faecalis E1Sol]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|315148655|gb|EFT92671.1| protein, SNF2 family [Enterococcus faecalis TX4244]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|126277710|ref|XP_001370967.1| PREDICTED: similar to INO80 complex homolog 1 [Monodelphis domestica]
          Length = 1558

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFK 162
            N   I +      + G G+NL     ++ + S W    + Q M    R+G T+Q      
Sbjct: 1167 NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ------ 1220

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY LI + TI+E +LQR   KS IQ ++++ 
Sbjct: 1221 --VTVYRLICKGTIEERILQRANEKSEIQQMVISG 1253


>gi|327535910|gb|AEA94744.1| Snf2 family protein [Enterococcus faecalis OG1RF]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|315162049|gb|EFU06066.1| protein, SNF2 family [Enterococcus faecalis TX0645]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|304310231|ref|YP_003809829.1| predicted helicase [gamma proteobacterium HdN1]
 gi|301795964|emb|CBL44165.1| predicted helicase [gamma proteobacterium HdN1]
          Length = 990

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           D  +  LE ++E+     I+V   F S LA +++A  Q         G T ++    ++ 
Sbjct: 809 DHLLVMLEELVEEGRR--ILVFSQFTSMLALIREALQQRKIPHLLLTGATQNRQ-ALVER 865

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +     P+      + G GLNL    + ++ F  WW+    +Q  +R       + G  +
Sbjct: 866 FQAENEPIFLISLKAGGVGLNLT-AADTVIHFDPWWNPAAEEQATDRA-----YRIGQDK 919

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFVY LI + TI+E ++     K  +QD +  A
Sbjct: 920 PVFVYKLICEGTIEEKIVLLQERKRALQDAITGA 953


>gi|257420085|ref|ZP_05597079.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257161913|gb|EEU91873.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|229549191|ref|ZP_04437916.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
 gi|229305428|gb|EEN71424.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|322701898|gb|EFY93646.1| recombinational repair protein [Metarhizium acridum CQMa 102]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 599 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 652

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 653 IFQRQSHKQSLSSCVVDS 670


>gi|257087662|ref|ZP_05582023.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300861266|ref|ZP_07107353.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|307288690|ref|ZP_07568670.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|256995692|gb|EEU82994.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300850305|gb|EFK78055.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|306500356|gb|EFM69693.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|315025539|gb|EFT37471.1| protein, SNF2 family [Enterococcus faecalis TX2137]
 gi|315035196|gb|EFT47128.1| protein, SNF2 family [Enterococcus faecalis TX0027]
 gi|315165356|gb|EFU09373.1| protein, SNF2 family [Enterococcus faecalis TX1302]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|315168675|gb|EFU12692.1| protein, SNF2 family [Enterococcus faecalis TX1341]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|255971908|ref|ZP_05422494.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|312953715|ref|ZP_07772550.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|255962926|gb|EET95402.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|295113640|emb|CBL32277.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterococcus sp. 7L76]
 gi|310628362|gb|EFQ11645.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|315149934|gb|EFT93950.1| protein, SNF2 family [Enterococcus faecalis TX0012]
 gi|315151814|gb|EFT95830.1| protein, SNF2 family [Enterococcus faecalis TX0031]
 gi|315159334|gb|EFU03351.1| protein, SNF2 family [Enterococcus faecalis TX0312]
 gi|323481616|gb|ADX81055.1| SNF2-type helicase [Enterococcus faecalis 62]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|85860994|ref|YP_463196.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
 gi|85724085|gb|ABC79028.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
          Length = 1407

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  GK  L      + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 1298 VEAFQAGKGSLFLISLRAGGVGLNLT-AADFVIHMDPWWN-----PAVEDQASDRAHRIG 1351

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V VY L+ +NTI+E +L+   +K  + D LL+ 
Sbjct: 1352 QKRPVTVYRLVTKNTIEEKILKLHASKRDLADSLLDG 1388


>gi|256957920|ref|ZP_05562091.1| Snf2 family protein [Enterococcus faecalis DS5]
 gi|256948416|gb|EEU65048.1| Snf2 family protein [Enterococcus faecalis DS5]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|255974902|ref|ZP_05425488.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|307278760|ref|ZP_07559826.1| protein, SNF2 family [Enterococcus faecalis TX0860]
 gi|255967774|gb|EET98396.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|306504566|gb|EFM73770.1| protein, SNF2 family [Enterococcus faecalis TX0860]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|148696004|gb|EDL27951.1| INO80 complex homolog 1 (S. cerevisiae) [Mus musculus]
          Length = 1032

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 656 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 707

Query: 178 ELVLQRLRTKSTIQDLLLNA--LKKETI 203
           E +LQR + KS IQ ++++    K +T+
Sbjct: 708 ERILQRAKEKSEIQRMVISGGNFKPDTL 735


>gi|315170383|gb|EFU14400.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|229544926|ref|ZP_04433651.1| Snf2 family helicase [Enterococcus faecalis TX1322]
 gi|229309818|gb|EEN75805.1| Snf2 family helicase [Enterococcus faecalis TX1322]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|94986612|ref|YP_594545.1| SNF2 family DNA/RNA helicase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730861|emb|CAJ54224.1| Superfamily II DNA/RNA helicases, SNF2 family [Lawsonia
            intracellularis PHE/MN1-00]
          Length = 1073

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  +IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 969  NTPEIPVFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1022

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI QNT++E +L+    K  + + ++
Sbjct: 1023 VFSYKLICQNTVEEKILKLQEMKRGVAEAII 1053


>gi|257090879|ref|ZP_05585240.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312902516|ref|ZP_07761722.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|256999691|gb|EEU86211.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310634186|gb|EFQ17469.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|315579675|gb|EFU91866.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|256853990|ref|ZP_05559355.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|307290304|ref|ZP_07570220.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|256710933|gb|EEU25976.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|306498725|gb|EFM68226.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|315030488|gb|EFT42420.1| protein, SNF2 family [Enterococcus faecalis TX4000]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|315174973|gb|EFU18990.1| protein, SNF2 family [Enterococcus faecalis TX1346]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|257416863|ref|ZP_05593857.1| Snf2 family protein [Enterococcus faecalis AR01/DG]
 gi|257158691|gb|EEU88651.1| Snf2 family protein [Enterococcus faecalis ARO1/DG]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|302915751|ref|XP_003051686.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
 gi|256732625|gb|EEU45973.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
          Length = 1557

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G KR V +Y L+++ T++
Sbjct: 847 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKRPVNIYRLVSKETVE 900

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E VL+R R K  ++ L + A
Sbjct: 901 EEVLERARNKLLLEYLTIQA 920


>gi|261203723|ref|XP_002629075.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
 gi|239586860|gb|EEQ69503.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
          Length = 828

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 662 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 715

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 716 IFQRQSHKQSLSSCVVDS 733


>gi|29377168|ref|NP_816322.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227554179|ref|ZP_03984226.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256763318|ref|ZP_05503898.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256963798|ref|ZP_05567969.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|257084340|ref|ZP_05578701.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257421693|ref|ZP_05598683.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|307271745|ref|ZP_07553016.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|312900055|ref|ZP_07759372.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|29344634|gb|AAO82392.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227176678|gb|EEI57650.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256684569|gb|EEU24264.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256954294|gb|EEU70926.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|256992370|gb|EEU79672.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257163517|gb|EEU93477.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|306511623|gb|EFM80622.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|311292812|gb|EFQ71368.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|315155557|gb|EFT99573.1| protein, SNF2 family [Enterococcus faecalis TX0043]
 gi|315573810|gb|EFU86001.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315580246|gb|EFU92437.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|256616806|ref|ZP_05473652.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
 gi|256596333|gb|EEU15509.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|169600905|ref|XP_001793875.1| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
 gi|160705541|gb|EAT90036.2| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
          Length = 831

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + ++N+ + P    LL +    CG  LNL  G N LV F   W+    QQ + R+     
Sbjct: 622 VDKFNDPEGPEFVFLLSSKAGGCG--LNL-IGANRLVLFDPDWNPAADQQALARVW---- 674

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+  FVY  I   TI+E V QR   K ++   ++++
Sbjct: 675 -RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDS 714


>gi|149023010|gb|EDL79904.1| rCG26684 [Rattus norvegicus]
          Length = 1032

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 656 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 707

Query: 178 ELVLQRLRTKSTIQDLLLNA--LKKETI 203
           E +LQR + KS IQ ++++    K +T+
Sbjct: 708 ERILQRAKEKSEIQRMVISGGNFKPDTL 735


>gi|77361926|ref|YP_341500.1| DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876837|emb|CAI89054.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1048

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T  +D   I E+  G   +      + G GLNL     + + +  WW+       +E+
Sbjct: 930  GQTRQRDKV-IDEFTSGATSVFLISLKAGGTGLNLTQADTV-IHYDPWWN-----PAVEK 982

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G    VFVY LI  N+I+E V +  + K  + D L 
Sbjct: 983  QATDRAYRIGQTNPVFVYKLIMANSIEEKVFKMQQDKQALVDALF 1027


>gi|257079857|ref|ZP_05574218.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294780417|ref|ZP_06745783.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|307269625|ref|ZP_07550961.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|256987887|gb|EEU75189.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294452517|gb|EFG20953.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|306514042|gb|EFM82627.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|329570678|gb|EGG52395.1| protein, SNF2 family [Enterococcus faecalis TX1467]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|307276930|ref|ZP_07558040.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|306506353|gb|EFM75513.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|315143788|gb|EFT87804.1| protein, SNF2 family [Enterococcus faecalis TX2141]
          Length = 1065

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|320164602|gb|EFW41501.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 2139

 Score = 42.7 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 81   LARLQKAFPQ--GRTLDKD-PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFF 135
            L+ LQ  F +  G TL+ D    I ++N    P+        + G G+NL     I++F 
Sbjct: 955  LSHLQMPFCRLDGSTLNTDRQHLIDKFNAPNSPIFCFLLSTRAGGLGINLHTADTIIMFD 1014

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            S   D   H  M     ++R  + G K+ V VY L+  +TI+E +LQR R K  +  +++
Sbjct: 1015 S---DFNPHSDMQ---ALSRAHRIGQKKPVTVYRLVTSDTIEEGILQRARKKLLLGHVVV 1068

Query: 196  NALK 199
              L+
Sbjct: 1069 EKLE 1072


>gi|312221998|emb|CBY01938.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1469

 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + ++N+ + P    LL +    CG  LNL  G N LV F   W+    QQ + R+     
Sbjct: 622 VDKFNDPEGPEFVFLLSSKAGGCG--LNL-IGANRLVLFDPDWNPAADQQALARVW---- 674

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+  FVY  I   TI+E V QR   K ++   ++++
Sbjct: 675 -RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDS 714


>gi|227519520|ref|ZP_03949569.1| Snf2 family helicase [Enterococcus faecalis TX0104]
 gi|227073045|gb|EEI11008.1| Snf2 family helicase [Enterococcus faecalis TX0104]
          Length = 1065

 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIP 110
            ++  K N   +++   F S L+ L+K          + +G T  +D  T+   +NEG+  
Sbjct: 904  LVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKD 963

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL     + + + LWW+       +E     R  + G K+ V V+ +
Sbjct: 964  VFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAAGRAHRMGQKKVVEVWRM 1017

Query: 171  IAQNTIDE 178
            IA+ T++E
Sbjct: 1018 IAEGTVEE 1025


>gi|145616124|ref|XP_361006.2| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
 gi|145009888|gb|EDJ94544.1| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 657 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 710

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 711 IFQRQSHKQSLSSCVVDS 728


>gi|225684006|gb|EEH22290.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb03]
          Length = 821

 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 655 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 708

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 709 IFQRQSHKQSLSSCVVDS 726


>gi|82596817|ref|XP_726418.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481821|gb|EAA17983.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 875

 Score = 42.7 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIE 149
           +DK    I+ + ++ KI +      +CG GLNL    N +VF  L+W    + + +    
Sbjct: 628 IDKREIYIKNFQSDEKIRIALLSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDRAH 686

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RIG T          V ++YL+AQNTIDE+V + +  K       LN 
Sbjct: 687 RIGTTHD-------TVNIHYLVAQNTIDEVVWKIINRKWNTLTTALNG 727


>gi|190572706|ref|YP_001970551.1| putative helicase [Stenotrophomonas maltophilia K279a]
 gi|190010628|emb|CAQ44237.1| putative helicase [Stenotrophomonas maltophilia K279a]
          Length = 1105

 Score = 42.7 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    +Q + +G+IP+      + G GLNL    + ++ F  WW+     Q  + 
Sbjct: 968  GDTQDR-ATPVQRFMQGEIPVFLISLKAGGVGLNLT-AADTVIHFDPWWNPAAENQASD- 1024

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G ++ VFVY LI   +I+E + +    K+ + + +L
Sbjct: 1025 ----RAHRIGQQQPVFVYRLITAGSIEERIAELQERKALLAESIL 1065


>gi|119943907|ref|YP_941587.1| SNF2-related protein [Psychromonas ingrahamii 37]
 gi|119862511|gb|ABM01988.1| SNF2-related protein [Psychromonas ingrahamii 37]
          Length = 1080

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             I ++  G +P+      + G GLNL    + ++ +  WW+       +E     R  + 
Sbjct: 968  VIDKFQNGNVPIFLISLKAGGVGLNLT-AADTVIHYDPWWN-----PAVENQATDRAYRI 1021

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + VFVY LI ++T++E VL     K  + D +  + ++E
Sbjct: 1022 GQDKPVFVYKLICEHTVEERVLALQTRKQKLADSVYGSEQEE 1063


>gi|225428788|ref|XP_002282100.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   R+      + G K+ V++Y  ++  TI+E 
Sbjct: 617 GCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRFLSTGTIEEK 670

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 671 VFQRQMSKEGLQKVI 685


>gi|22775414|dbj|BAC11858.1| recombinational repair protein [Magnaporthe grisea]
          Length = 803

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 641 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 694

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 695 IFQRQSHKQSLSSCVVDS 712


>gi|327349292|gb|EGE78149.1| DsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis ATCC 18188]
          Length = 849

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 683 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 736

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 737 IFQRQSHKQSLSSCVVDS 754


>gi|157130680|ref|XP_001661961.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
 gi|108881922|gb|EAT46147.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
          Length = 791

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L+A  TI+E 
Sbjct: 566 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLATGTIEEK 619

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  + + +++
Sbjct: 620 IFQRQTHKKALSNTVVD 636


>gi|74177549|dbj|BAB31000.3| unnamed protein product [Mus musculus]
          Length = 559

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 434 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 485

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +LQR + KS IQ ++++ 
Sbjct: 486 ERILQRAKEKSEIQRMVISG 505


>gi|325089155|gb|EGC42465.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           H88]
          Length = 830

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 664 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 717

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 718 IFQRQSHKQSLSSCVVDS 735


>gi|302533833|ref|ZP_07286175.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
 gi|302442728|gb|EFL14544.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL   G++ + +  WW+       +E     R  + G
Sbjct: 532 VDRFQSGEVPVFLLSLKAAGTGLNLTRAGHV-IHYDRWWN-----PAVEEQATDRAYRIG 585

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +IA+ T+++ + + L  K  + D +L +
Sbjct: 586 QTQPVQVHRIIAEGTVEDRIAELLEAKRALADAVLGS 622


>gi|184201460|ref|YP_001855667.1| SNF2 family helicase [Kocuria rhizophila DC2201]
 gi|183581690|dbj|BAG30161.1| putative helicase [Kocuria rhizophila DC2201]
          Length = 925

 Score = 42.7 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A +  A+  G T D+    ++ +  G+ P+      + G G+NL    +       WW
Sbjct: 796 DEAGIAYAYLDGSTKDR-AAALKTFRSGRAPVFLVSLKAGGFGINLTEA-DYCYLLDPWW 853

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q ++R       + G  R V VY ++AQ+TI+E V++    K+ +   +L+
Sbjct: 854 NPAAENQAVDR-----THRIGQTRKVMVYRMVAQDTIEEKVMELKARKAELFSAVLD 905


>gi|312901374|ref|ZP_07760654.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|311291537|gb|EFQ70093.1| protein, SNF2 family [Enterococcus faecalis TX0470]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 25/179 (13%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
           E +++ SK      LA+G  YY  +K       +K+   +++ E    + II+ Y++  +
Sbjct: 231 EEYDTPSK------LAHGLRYYANQK-------DKLDYAQMLCE-GTESNIIIFYYYQKE 276

Query: 81  LARLQ-----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +  L+     K F +      +    Q W   K  + F    +   G+ LQY  N ++F+
Sbjct: 277 IEALKEKIKNKTFFEVNGKHSNLPPKQSWKSLKNSVTFVQYMAGSAGIELQY-ANTVIFY 335

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  +  +++ Q      + R  + G  + V VY  I Q TI++ V Q L  K    + L
Sbjct: 336 TPTYSYQDYSQ-----ALGRAYRNGQTKKVTVYRFITQQTIEQAVYQALENKEDFSEEL 389


>gi|225441419|ref|XP_002275336.1| PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
            1); ATP binding / DNA binding / helicase [Vitis vinifera]
          Length = 2049

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            KI +      S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +
Sbjct: 1115 KIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHI 1168

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1169 YRLISESTIEENILKKANQKRALDDLVIQS 1198


>gi|331238296|ref|XP_003331803.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309310793|gb|EFP87384.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1611

 Score = 42.7 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL+    +++F S W    + Q M       R  + G K  V VY L+ ++T++E 
Sbjct: 733 GLGINLETADTVIIFDSDWNPQNDLQAM------ARAHRIGQKNHVNVYRLVTKDTVEED 786

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           VL+R + K  ++  ++N +     HV
Sbjct: 787 VLERAKRKMILEYAIINQMDTSGKHV 812


>gi|266620561|ref|ZP_06113496.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
 gi|288867854|gb|EFD00153.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
          Length = 1154

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +NE   P+      + G GLNL    +I++ F  WW+     Q  +     R  + G
Sbjct: 1037 VRAFNEDDTPVFLISLKAGGTGLNLT-AASIVIHFDPWWNQAAQNQATD-----RAHRIG 1090

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++ V VY LI ++T++E +L+    K+ + + ++ 
Sbjct: 1091 QQQVVTVYKLIMKDTLEEKILEMQEKKAGLSEEIIT 1126


>gi|83767454|dbj|BAE57593.1| unnamed protein product [Aspergillus oryzae]
          Length = 815

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 649 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 702

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 703 IFQRQSHKQSLSSCVVDS 720


>gi|262193501|ref|YP_003264710.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262076848|gb|ACY12817.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 777

 Score = 42.7 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+V   F S LA L +   +         G T ++    + E+ EG+  +      + G 
Sbjct: 628 ILVFSQFTSMLALLSQGLEERGVAHSVLTGATANRQR-AVDEFQEGRTEVFLISLKAGGT 686

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    + +V +  WW+     Q  +     R  + G  R VFVY LI   +++E +L
Sbjct: 687 GLNLTR-ADTVVHYDPWWNPAAQAQATD-----RAYRIGQTRPVFVYNLITAGSVEERML 740

Query: 182 QRLRTKSTIQDLLL 195
              + K  + D +L
Sbjct: 741 ALQQRKRHLADTIL 754


>gi|239608107|gb|EEQ85094.1| DNA repair and recombination protein RAD54 [Ajellomyces
           dermatitidis ER-3]
          Length = 795

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 629 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 682

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 683 IFQRQSHKQSLSSCVVDS 700


>gi|284041008|ref|YP_003390938.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283820301|gb|ADB42139.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1003

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            ++ A+  G T+D+         +  + L      + G G NL     + +    WW+   
Sbjct: 878  IKYAYLDGSTVDRQSQVELFQTDDSVKLFLISLKAGGLGHNLTAADYVFIL-DPWWN--- 933

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS-------TIQDLLLN 196
                IE   V R  + G ++ VF Y  IA+NT++E +L   R K        T ++  + 
Sbjct: 934  --PAIEAQAVDRAHRIGQQKTVFTYKFIAKNTVEEKILSLQRAKQQLAGSLITTEENFMK 991

Query: 197  ALKKETIHV 205
            AL KE I V
Sbjct: 992  ALTKEDIMV 1000


>gi|115389990|ref|XP_001212500.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
 gi|114194896|gb|EAU36596.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
          Length = 821

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 655 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 708

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 709 IFQRQSHKQSLSSCVVDS 726


>gi|221485219|gb|EEE23509.1| hypothetical protein TGGT1_105260 [Toxoplasma gondii GT1]
          Length = 1244

 Score = 42.7 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTI 176
            +CGHGLNL   G + VF  L+W      QMI+     R  + G +  +V ++YLIA+ T+
Sbjct: 1021 ACGHGLNLTAAGTV-VFAELYW---VPGQMIQ--AEDRSHRIGTEFSSVQIHYLIAEGTL 1074

Query: 177  DELVLQRLRTK 187
            DE V + L+ K
Sbjct: 1075 DETVFRILQRK 1085


>gi|218233639|ref|YP_002366534.1| putative helicase [Bacillus cereus B4264]
 gi|218161596|gb|ACK61588.1| putative helicase [Bacillus cereus B4264]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|259485020|tpe|CBF81736.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 833

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 667 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 720

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 721 IFQRQSHKQSLSSCVVDS 738


>gi|229043607|ref|ZP_04191314.1| Helicase, SWF/SNF [Bacillus cereus AH676]
 gi|228725682|gb|EEL76932.1| Helicase, SWF/SNF [Bacillus cereus AH676]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|229178258|ref|ZP_04305628.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
 gi|228605137|gb|EEK62588.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|226293396|gb|EEH48816.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb18]
          Length = 863

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 697 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 750

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 751 IFQRQSHKQSLSSCVVDS 768


>gi|60688369|gb|AAH90481.1| Hells protein [Danio rerio]
          Length = 252

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 68  DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQ-AQDRCHRI 126

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V VY LI  NTIDE +L+R   K  ++ +++
Sbjct: 127 GQTK--------PVVVYRLITANTIDEKILERASAKRKLEKMVI 162


>gi|229144464|ref|ZP_04272868.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
 gi|228638999|gb|EEK95425.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|229150056|ref|ZP_04278279.1| Helicase, SWF/SNF [Bacillus cereus m1550]
 gi|228633355|gb|EEK89961.1| Helicase, SWF/SNF [Bacillus cereus m1550]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|237842313|ref|XP_002370454.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211968118|gb|EEB03314.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|221502587|gb|EEE28307.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1231

 Score = 42.7 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTI 176
            +CGHGLNL   G + VF  L+W      QMI+     R  + G +  +V ++YLIA+ T+
Sbjct: 1008 ACGHGLNLTAAGTV-VFAELYW---VPGQMIQ--AEDRSHRIGTEFSSVQIHYLIAEGTL 1061

Query: 177  DELVLQRLRTK 187
            DE V + L+ K
Sbjct: 1062 DETVFRILQRK 1072


>gi|317143637|ref|XP_001819595.2| DNA repair protein rhp54 [Aspergillus oryzae RIB40]
          Length = 827

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 661 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 714

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 715 IFQRQSHKQSLSSCVVDS 732


>gi|228938966|ref|ZP_04101566.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|228971848|ref|ZP_04132469.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228978456|ref|ZP_04138833.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228781473|gb|EEM29674.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228787938|gb|EEM35896.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228820815|gb|EEM66840.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|326939468|gb|AEA15364.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|229109309|ref|ZP_04238907.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
 gi|228674146|gb|EEL29392.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|284031541|ref|YP_003381472.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283810834|gb|ADB32673.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 961

 Score = 42.7 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  + K    ++ +  G+IP+      + G GLNL    ++ V +  WW+       +E 
Sbjct: 837 GTPVRKREEMVERFQAGEIPVFLLSLKAAGTGLNLTRADHV-VHYDRWWN-----PAVED 890

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G  R V V+ LIA+ TI++ +   L  K  + D +L A
Sbjct: 891 QATDRAYRIGQIRPVQVHRLIAEGTIEDRIAAMLAGKRALADSVLTA 937


>gi|228964841|ref|ZP_04125946.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794779|gb|EEM42280.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|229069404|ref|ZP_04202693.1| Helicase, SWF/SNF [Bacillus cereus F65185]
 gi|228713543|gb|EEL65429.1| Helicase, SWF/SNF [Bacillus cereus F65185]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|304439383|ref|ZP_07399295.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372165|gb|EFM25759.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 50 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
          ++HD K+ ALE +IE AN  P+++AY F  DL R+++
Sbjct: 15 QIHDRKLDALEDLIEGANGKPVLIAYWFKHDLTRIKE 51


>gi|119472846|ref|XP_001258430.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
 gi|119406582|gb|EAW16533.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
          Length = 835

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 669 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 722

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 723 IFQRQSHKQSLSSCVVDS 740


>gi|218896786|ref|YP_002445197.1| putative helicase [Bacillus cereus G9842]
 gi|218540700|gb|ACK93094.1| putative helicase [Bacillus cereus G9842]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGELFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|133778670|gb|AAI33862.1| Hells protein [Danio rerio]
          Length = 270

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 86  DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQ-AQDRCHRI 144

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V VY LI  NTIDE +L+R   K  ++ +++
Sbjct: 145 GQTK--------PVVVYRLITANTIDEKILERASAKRKLEKMVI 180


>gi|328856433|gb|EGG05554.1| hypothetical protein MELLADRAFT_87820 [Melampsora larici-populina
           98AG31]
          Length = 593

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNS---DLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           DEKI    +++    +   ++  H  S    L RL    PQ +  D     +Q +N    
Sbjct: 287 DEKI----ILVSNFTSTLDVIEAHCRSQNYSLCRLDGKTPQTKRDD----IVQTFNRMTA 338

Query: 110 PLLFA---HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              F       S G GLNL  G + L+ F   W+     Q + RI     RQ G K+A  
Sbjct: 339 RSQFVFLLSSKSGGVGLNL-IGASRLILFDSDWNPATDLQAMARI----WRQ-GQKKACH 392

Query: 167 VYYLIAQNTIDELVLQRLRTKSTI-QDLLLNA 197
           +Y  +A  TIDE + QR  TK+ +  DL+ +A
Sbjct: 393 IYRFLATGTIDECIFQRQVTKTGLATDLIKDA 424


>gi|242062862|ref|XP_002452720.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
 gi|241932551|gb|EES05696.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
          Length = 901

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 12/81 (14%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQN 174
           S G G+NL  G + ++F+   W+    QQ  +R   IG TR+        V +Y LI+++
Sbjct: 53  SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE--------VHIYRLISES 103

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           TI+E +L++   K  + DL++
Sbjct: 104 TIEENILKKANQKRALDDLVI 124


>gi|302871105|ref|YP_003839741.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573964|gb|ADL41755.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 1139

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G
Sbjct: 1031 VNRFNSGEKNVFLLSLKAGGFGLNIT-GADVVIHFDAWWN-----PAVENQATARSHRLG 1084

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K  V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1085 QKNVVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|228900434|ref|ZP_04064661.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
 gi|228859174|gb|EEN03607.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGELFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|228907542|ref|ZP_04071399.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
 gi|228852034|gb|EEM96831.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ TI+E
Sbjct: 1012 TVQVIKLVAQGTIEE 1026


>gi|124513860|ref|XP_001350286.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23615703|emb|CAD52695.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 906

 Score = 42.7 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIERIGVTRQRQAGF 161
           N+  + +      +CG GLNL    N +VF  L+W    + + +    RIG         
Sbjct: 708 NDDNVKIALLSITACGMGLNLT-AANTVVFGELFWVPGQIIQAEDRAHRIGTAHD----- 761

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V ++YLIAQNTIDE+V + +  K       LN ++
Sbjct: 762 --VVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGIE 797


>gi|127512820|ref|YP_001094017.1| SNF2-related protein [Shewanella loihica PV-4]
 gi|126638115|gb|ABO23758.1| SNF2-related protein [Shewanella loihica PV-4]
          Length = 1161

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            GR+  +D   I+ +  G++ +      + G GLNL    ++++    WW+    +Q  +R
Sbjct: 1037 GRSRHRDRI-IERFRRGEVNVFLISLKAGGSGLNLTEA-DVVIHVDPWWNPAAEEQASDR 1094

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  + VFVY LI QNT++E + Q  ++K  +
Sbjct: 1095 A-----YRIGQDKPVFVYKLICQNTVEERIQQLQQSKQAL 1129


>gi|254565555|ref|XP_002489888.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|238029684|emb|CAY67607.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|328350301|emb|CCA36701.1| putative SNF2 family helicase/ATPase [Pichia pastoris CBS 7435]
          Length = 1009

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGF 161
           + +  IP+      + G G+NL    N+++F   +   D ++ +    R+G T++     
Sbjct: 887 YEDETIPVFLLSTKAGGFGINLVCANNVIIFDQSFNPHDDKQAEDRAHRVGQTKE----- 941

Query: 162 KRAVFVYYLIAQNTIDELVLQ----RLRTKSTIQD 192
              V VY ++ +NTIDE +LQ    +L+  ST+ D
Sbjct: 942 ---VNVYRMVTKNTIDESILQLALNKLQLDSTVSD 973


>gi|120602191|ref|YP_966591.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|304569715|ref|YP_011298.2| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562420|gb|ABM28164.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|311234232|gb|ADP87086.1| SNF2-related protein [Desulfovibrio vulgaris RCH1]
          Length = 1071

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 967  NSPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1020

Query: 165  VFVYYLIAQNTIDELVLQ 182
            VF Y LI QNT++E +L+
Sbjct: 1021 VFSYKLICQNTVEEKILK 1038


>gi|46449909|gb|AAS96558.1| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1055

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 951  NSPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1004

Query: 165  VFVYYLIAQNTIDELVLQ 182
            VF Y LI QNT++E +L+
Sbjct: 1005 VFSYKLICQNTVEEKILK 1022


>gi|255721613|ref|XP_002545741.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
 gi|240136230|gb|EER35783.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
          Length = 1368

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL     ++ + S W    + Q M       R  + G  + V VY L+ +NTI+E 
Sbjct: 1297 GLGLNLTSADTVIFYDSDWNPTVDAQAM------DRAHRIGQTKVVTVYRLLTKNTIEER 1350

Query: 180  VLQRLRTKSTIQDLLLN 196
            + Q+ + K  IQ L++N
Sbjct: 1351 IRQKAQNKEEIQKLVIN 1367


>gi|119470636|ref|ZP_01613304.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
 gi|119446106|gb|EAW27384.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
          Length = 1048

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 16/134 (11%)

Query: 71   IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +I+   F S L  + K   +         G+T  +D   I E+  GK  +      + G 
Sbjct: 901  VIIFSQFTSALDLIAKQLSELDINFSLLTGQTRHRDKV-IDEFTSGKTSVFLISLKAGGT 959

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL     + + F  WW+       +E+    R  + G    VFVY LI  ++I++ V 
Sbjct: 960  GLNLTQADTV-IHFDPWWN-----PAVEKQATDRAYRIGQTNPVFVYKLIMSHSIEQKVF 1013

Query: 182  QRLRTKSTIQDLLL 195
            +    K  + D L 
Sbjct: 1014 KMQEDKQALVDALF 1027


>gi|242059437|ref|XP_002458864.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
 gi|241930839|gb|EES03984.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
          Length = 1207

 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 14/107 (13%)

Query: 100  TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVT 154
            +I+E+N  E +I +      + G G++L     ++++   F+ + DL+  Q    RIG T
Sbjct: 905  SIKEYNRAESEIFIFLMSTRAGGLGVDLPGADRVIIYDPDFNPFMDLQA-QARAHRIGQT 963

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R         V VY LI + +++E +LQ+ + K  ++++L+N+  K+
Sbjct: 964  R--------PVVVYQLITKCSVEEKILQKSKKKLAVENMLMNSSNKK 1002


>gi|255946938|ref|XP_002564236.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591253|emb|CAP97480.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 653 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 706

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 707 IFQRQSHKQSLSSCVVDS 724


>gi|50546160|ref|XP_500607.1| YALI0B07513p [Yarrowia lipolytica]
 gi|49646473|emb|CAG82840.1| YALI0B07513p [Yarrowia lipolytica]
          Length = 807

 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G GLNL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 632 EGQEFIFLLSSKAGGCGLNL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 685

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY LIA  TI+E + QR   K ++   +++ ++    H
Sbjct: 686 FVYRLIATGTIEEKIFQRQSMKQSLSTCVVDEVQDVERH 724


>gi|224070615|ref|XP_002303179.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840611|gb|EEE78158.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1682

 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 91  GRTLDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T  +D  T+ Q +N   KI +      S G G+NL  G + ++F+   W+    QQ  
Sbjct: 721 GSTQPEDRQTLMQRFNTNPKIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQ 779

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 780 DRC-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 823


>gi|78356607|ref|YP_388056.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219012|gb|ABB38361.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
          Length = 1068

 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G GLNL    + ++ +  WW+       +E     R  + G K  VF Y
Sbjct: 968  IPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVENQATDRAHRIGQKNQVFAY 1021

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +I QNT++E +L+    K  + D ++
Sbjct: 1022 KMICQNTVEEKILKLQDMKRGVADAII 1048


>gi|291455081|ref|ZP_06594471.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
 gi|291358030|gb|EFE84932.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + EG+ P+L     + G GLNL    ++   +  WW+       +E     R  + G
Sbjct: 577 VDRFQEGRTPVLVLSLKAAGTGLNLTRASHVF-HYDRWWN-----PAVEEQATDRAYRIG 630

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LI + T+++ + + L  K  + D +L +
Sbjct: 631 QTRPVQVHRLITEGTVEDRIAELLTAKRALADAVLGS 667


>gi|239983251|ref|ZP_04705775.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 616

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + EG+ P+L     + G GLNL    ++   +  WW+       +E     R  + G
Sbjct: 503 VDRFQEGRTPVLVLSLKAAGTGLNLTRASHVF-HYDRWWN-----PAVEEQATDRAYRIG 556

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LI + T+++ + + L  K  + D +L +
Sbjct: 557 QTRPVQVHRLITEGTVEDRIAELLTAKRALADAVLGS 593


>gi|146324514|ref|XP_751168.2| dsDNA-dependent ATPase Rad54 [Aspergillus fumigatus Af293]
 gi|129557284|gb|EAL89130.2| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           Af293]
          Length = 807

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 641 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 694

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 695 IFQRQSHKQSLSSCVVDS 712


>gi|328865915|gb|EGG14301.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1343

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQRQAGFK 162
           + +I L      S G GLNL  G + ++F+   W+     + Q    RIG TR+      
Sbjct: 304 DNRIFLFILSTRSGGLGLNL-TGADTVIFYDTDWNPSMDAQAQDRCHRIGQTRE------ 356

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +Y LI Q+TI+E +L++   K  + D+++
Sbjct: 357 --VHIYRLITQHTIEENILKKSNQKRQLDDMVI 387


>gi|289617844|emb|CBI55421.1| unnamed protein product [Sordaria macrospora]
          Length = 1667

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ TI+
Sbjct: 866 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTIE 919

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V++R R K  ++ L + A
Sbjct: 920 EEVVKRARNKLFLEYLTIQA 939


>gi|225560868|gb|EEH09149.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           G186AR]
          Length = 1511

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 572 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 625

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 626 IFQRQSHKQSLSSCVVDS 643


>gi|68076919|ref|XP_680379.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56501303|emb|CAH95084.1| DNA helicase, putative [Plasmodium berghei]
          Length = 835

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIE 149
           +DK    I+ + ++ KI +      +CG GLNL    N +VF  L+W    + + +    
Sbjct: 629 IDKREIYIKNFQSDEKIRIALLSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDRAH 687

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RIG T          + ++YL+AQNTIDE+V + +  K       LN 
Sbjct: 688 RIGTTHD-------TINIHYLVAQNTIDEVVWKIINRKWNTLTTALNG 728


>gi|294660619|ref|NP_853484.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284812282|gb|AAP57052.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284930981|gb|ADC30920.1| SNF2 family helicase [Mycoplasma gallisepticum str. R(high)]
 gi|284931739|gb|ADC31677.1| SNF2 family helicase [Mycoplasma gallisepticum str. F]
          Length = 1108

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + ++N  K P +F A   + G GLNL  G  I++ + LWW+L    Q        R  + 
Sbjct: 999  VNDFNNAKEPAVFIASLKAGGVGLNLT-GAEIVIHYDLWWNLALQNQ-----ATDRAHRI 1052

Query: 160  GFKRAVFVYYLIAQNTIDELVL 181
            G +  + VY +IA +TI+E ++
Sbjct: 1053 GQRNHLQVYRIIAADTIEERIV 1074


>gi|317031306|ref|XP_001393160.2| DNA repair protein rhp54 [Aspergillus niger CBS 513.88]
          Length = 813

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 647 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 700

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 701 IFQRQSHKQSLSSCVVDS 718


>gi|298711307|emb|CBJ26552.1| DNA repair and recombination protein RAD54 homolog [Ectocarpus
           siliculosus]
          Length = 1510

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   R+      + G K+  FVY  ++  TI+E 
Sbjct: 645 GCGLNL-IGGNRLVLFDPDWNPAVDKQAAARVW-----RDGQKKRCFVYRFVSTGTIEEK 698

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q+++
Sbjct: 699 VFQRQLSKEGLQNIV 713


>gi|297195014|ref|ZP_06912412.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152588|gb|EDY65843.2| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 969

 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PCTIQE-----WNEG 107
           LE I+ +  +  +   Y     +ARL  A    R +         P T +E     +  G
Sbjct: 806 LETILSEDGSVLVFTQY---VSMARLLSAHLTSRAIPSQLLHGGTPITERERMVDRFQSG 862

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL   G++ + +  WW+       +E     R  + G  + V V
Sbjct: 863 EVPVFILSLKAAGTGLNLTRAGHV-IHYDRWWN-----PAVEEQATDRAYRIGQTQPVQV 916

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + L+ + T+++ + + L +K  + D +L +
Sbjct: 917 HRLVTEGTVEDRIAEMLASKRALADAVLGS 946


>gi|218191385|gb|EEC73812.1| hypothetical protein OsI_08529 [Oryza sativa Indica Group]
          Length = 1765

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI+++TI+
Sbjct: 877 SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISESTIE 930

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L++   K  + DL++
Sbjct: 931 ENILKKANQKRALDDLVI 948


>gi|222619629|gb|EEE55761.1| hypothetical protein OsJ_04298 [Oryza sativa Japonica Group]
          Length = 1129

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 12/86 (13%)

Query: 120 GHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G++L     ++++   F+ + DL+  Q    RIG TR         V VY LI + ++
Sbjct: 903 GMGVDLPGADRVIIYDPDFNPFMDLQA-QSRAHRIGQTR--------PVVVYQLITKCSV 953

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           +E +LQ+ + K  I+++L+N+ KK +
Sbjct: 954 EEKILQKSKQKLAIENMLMNSSKKPS 979


>gi|115441433|ref|NP_001044996.1| Os01g0881000 [Oryza sativa Japonica Group]
 gi|56784632|dbj|BAD81679.1| putative chromatin remodeling factor CHD3 [Oryza sativa Japonica
            Group]
 gi|113534527|dbj|BAF06910.1| Os01g0881000 [Oryza sativa Japonica Group]
          Length = 1150

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 12/86 (13%)

Query: 120  GHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            G G++L     ++++   F+ + DL+  Q    RIG TR         V VY LI + ++
Sbjct: 924  GMGVDLPGADRVIIYDPDFNPFMDLQA-QSRAHRIGQTR--------PVVVYQLITKCSV 974

Query: 177  DELVLQRLRTKSTIQDLLLNALKKET 202
            +E +LQ+ + K  I+++L+N+ KK +
Sbjct: 975  EEKILQKSKQKLAIENMLMNSSKKPS 1000


>gi|310766267|gb|ADP11217.1| SWI/SNF-like matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia sp. Ejp617]
          Length = 852

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 734 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 792 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 832


>gi|294812014|ref|ZP_06770657.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326440261|ref|ZP_08214995.1| helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294324613|gb|EFG06256.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 986

 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+IP+      + G GLNL   G++ + +  WW+       +E     R  + G
Sbjct: 873 VDRFQSGEIPVFVLSLKAAGTGLNLTRAGHV-IHYDRWWN-----PAVEEQATDRAYRIG 926

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LI + T+++ +   L  K  + D +L +
Sbjct: 927 QTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVLGS 963


>gi|289618348|emb|CBI55072.1| unnamed protein product [Sordaria macrospora]
          Length = 972

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R LD DP T          +L A    C  GLNL    N ++    WW      Q ++R+
Sbjct: 861 RALDYDPNTR---------ILLASLGVCSVGLNL-VSANTVILADSWWAPAIEDQAVDRV 910

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                 + G  R   VY L+ +NTI+E VL
Sbjct: 911 -----HRLGQTRETNVYRLVMENTIEERVL 935


>gi|254391562|ref|ZP_05006762.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197705249|gb|EDY51061.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+IP+      + G GLNL   G++ + +  WW+       +E     R  + G
Sbjct: 641 VDRFQSGEIPVFVLSLKAAGTGLNLTRAGHV-IHYDRWWN-----PAVEEQATDRAYRIG 694

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LI + T+++ +   L  K  + D +L +
Sbjct: 695 QTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVLGS 731


>gi|317484825|ref|ZP_07943719.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923919|gb|EFV45111.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1073

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  +IP+      + G G+NL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 969  NSPEIPIFLISLKAGGTGINLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1022

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI QNT++E +L+    K  + + ++
Sbjct: 1023 VFSYKLICQNTVEEKILKLQEMKRGVAEAVI 1053


>gi|283476853|emb|CAY72692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
           12163]
          Length = 852

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 734 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNL-TAADTVIHYDPWWNPAAENQATDR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 792 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 832


>gi|308807292|ref|XP_003080957.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
 gi|116059418|emb|CAL55125.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 91  GRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           G T+ K    ++E+N+      + LL +    CG  +NL  GGN LV F   W+    +Q
Sbjct: 593 GTTIGKRQKLVKEFNDPTSNSFVFLLSSKAGGCG--INL-IGGNRLVLFDPDWNPANDKQ 649

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                   R  + G K+  ++Y  +A  TI+E V QR  +K ++Q+++
Sbjct: 650 -----AAARCWRDGQKKKCYLYRFLAAGTIEEKVFQRQLSKESLQNVV 692


>gi|38637850|ref|NP_942824.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527188|gb|AAP85938.1| putative helicase, superfamily II [Ralstonia eutropha H16]
          Length = 1106

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ + +G++PL      + G GLNL    + ++ +  WW+       +E     R  + G
Sbjct: 976  VERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWN-----PAVENQATDRAHRLG 1029

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFVY LI   +++E ++     K+ + + +L+
Sbjct: 1030 QDKPVFVYKLITGGSVEEKIVAMQAQKAALAEAILS 1065


>gi|307323253|ref|ZP_07602463.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
 gi|306890742|gb|EFN21718.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
          Length = 978

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL   G++ V +  WW+       +E     R  + G
Sbjct: 864 VRSFQDGEVPVFLLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVEAQATDRAYRIG 917

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +IA+ T+++ +   L  K  + D +L +
Sbjct: 918 QTQPVQVHRIIAEGTVEDRIAAMLTRKQELADAVLGS 954


>gi|218189474|gb|EEC71901.1| hypothetical protein OsI_04668 [Oryza sativa Indica Group]
          Length = 1105

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 12/86 (13%)

Query: 120 GHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G++L     ++++   F+ + DL+  Q    RIG TR         V VY LI + ++
Sbjct: 908 GMGVDLPGADRVIIYDPDFNPFMDLQA-QSRAHRIGQTR--------PVVVYQLITKCSV 958

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           +E +LQ+ + K  I+++L+N+ KK +
Sbjct: 959 EEKILQKSKQKLAIENMLMNSSKKPS 984


>gi|290962297|ref|YP_003493479.1| hypothetical protein SCAB_79891 [Streptomyces scabiei 87.22]
 gi|260651823|emb|CBG74949.1| putative helicase (fragment) [Streptomyces scabiei 87.22]
          Length = 953

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +  G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 839 VERFQAGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 892

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V V+ LIA+ TI++ +   L +K  + D +L
Sbjct: 893 QTRPVQVHRLIAEGTIEDRIADMLLSKRKLADAVL 927


>gi|213625823|gb|AAI71410.1| Helicase, lymphoid-specific [Danio rerio]
 gi|213627472|gb|AAI71408.1| Helicase, lymphoid-specific [Danio rerio]
 gi|220677979|emb|CAX14759.1| helicase, lymphoid-specific [Danio rerio]
          Length = 853

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 669 DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQ-AQDRCHRI 727

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V VY LI  NTIDE +L+R   K  ++ +++
Sbjct: 728 GQTK--------PVVVYRLITANTIDEKILERASAKRKLEKMVI 763


>gi|134077689|emb|CAK45729.1| unnamed protein product [Aspergillus niger]
          Length = 846

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 680 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 733

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 734 IFQRQSHKQSLSSCVVDS 751


>gi|259907055|ref|YP_002647411.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
 gi|224962677|emb|CAX54132.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
          Length = 883

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 765 GATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR 822

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 823 AW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 863


>gi|261157174|gb|ACX54781.1| DEAD/DEAH box helicase domain-containing protein PIE1 [Oryza sativa
            Japonica Group]
          Length = 2044

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI+++TI+
Sbjct: 1156 SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISESTIE 1209

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L++   K  + DL++
Sbjct: 1210 ENILKKANQKRALDDLVI 1227


>gi|295664715|ref|XP_002792909.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226278430|gb|EEH33996.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 502 EGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 555

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY  IA  TI+E + QR   K ++   ++++
Sbjct: 556 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDS 587


>gi|159154987|gb|AAI54480.1| Hells protein [Danio rerio]
          Length = 290

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 106 DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQ-AQDRCHRI 164

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V VY LI  NTIDE +L+R   K  ++ +++
Sbjct: 165 GQTK--------PVVVYRLITANTIDEKILERASAKRKLEKMVI 200


>gi|154277928|ref|XP_001539795.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
 gi|150413380|gb|EDN08763.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
          Length = 684

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 518 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 571

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 572 IFQRQSHKQSLSSCVVDS 589


>gi|297599769|ref|NP_001047786.2| Os02g0689800 [Oryza sativa Japonica Group]
 gi|255671175|dbj|BAF09700.2| Os02g0689800 [Oryza sativa Japonica Group]
          Length = 1059

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI+++TI+
Sbjct: 171 SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISESTIE 224

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L++   K  + DL++
Sbjct: 225 ENILKKANQKRALDDLVI 242


>gi|164427331|ref|XP_963868.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
 gi|157071698|gb|EAA34632.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
          Length = 1664

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ TI+
Sbjct: 863 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTIE 916

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V++R R K  ++ L + A
Sbjct: 917 EEVVKRARNKLFLEYLTIQA 936


>gi|170032260|ref|XP_001844000.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167872116|gb|EDS35499.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 821

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 44/162 (27%)

Query: 59  LEVIIEKANAAPIIVAY-------------HFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
           LE +IE+     +IV+Y             H+N    RL  A P               +
Sbjct: 565 LEALIERREKV-VIVSYFSKTLDMIAGLCEHYNYKFCRLDGATPS-------------QD 610

Query: 106 EGKIPLLFAHPAS-----------CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            GK+   F +P+S            G GLNL  G + LV F   W+     Q + RI   
Sbjct: 611 RGKLVATFNNPSSDIFIFLLSAKAGGIGLNL-VGASRLVLFDNDWNPASDLQAMSRIW-- 667

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 668 ---RDGQTRNVFIYRLITAFSIEEKIFQRQISKTSLSGSVVD 706


>gi|15896547|ref|NP_349896.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026382|gb|AAK81236.1|AE007827_4 Superfamily II DNA/RNA helicases, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510706|gb|ADZ22342.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1077

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +Q++NEG   +      + G GLNL    ++++ F  WW+       +E     R  + G
Sbjct: 966  VQDFNEGNNSVFLISLKAGGTGLNLT-SADVVIHFDPWWN-----PAVEEQATDRAHRIG 1019

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K  V V  L+A+ TI+E +++    K  + D LL+
Sbjct: 1020 QKNIVEVIKLVAKGTIEEKIIRLQEEKKRLVDSLLS 1055


>gi|171687883|ref|XP_001908882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943903|emb|CAP69555.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1700

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ TI+
Sbjct: 866 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTIE 919

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V++R R K  ++ L + A
Sbjct: 920 EEVVKRARNKLFLEYLTIQA 939


>gi|254567481|ref|XP_002490851.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238030647|emb|CAY68571.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328351234|emb|CCA37634.1| DNA repair and recombination protein RAD54B [Pichia pastoris CBS
           7435]
          Length = 840

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     + G GLNL  G + L+ F   W+     Q + R+      + G KR  F+Y L
Sbjct: 610 IMLLSSKAGGVGLNL-IGASRLILFDNDWNPSVDIQAMARV-----HRDGQKRHTFIYRL 663

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
             + TIDE +LQR   K  + D  L+
Sbjct: 664 YTKGTIDEKILQRQLMKQNLSDKFLD 689


>gi|312623213|ref|YP_004024826.1| SNF2-like protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203680|gb|ADQ47007.1| SNF2-related protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 1140

 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G
Sbjct: 1031 VNRFNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWN-----PAVENQATARAHRLG 1084

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K  V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1085 QKNVVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|297741293|emb|CBI32424.3| unnamed protein product [Vitis vinifera]
          Length = 1112

 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q   R+      + G K+ V++Y  ++  TI+E 
Sbjct: 795 GCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRFLSTGTIEEK 848

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 849 VFQRQMSKEGLQKVI 863


>gi|320589247|gb|EFX01709.1| chromodomain helicase [Grosmannia clavigera kw1407]
          Length = 1719

 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ TI+
Sbjct: 862 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTIE 915

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V++R R K  ++ L + A
Sbjct: 916 EEVVKRARNKLFLEYLTIQA 935


>gi|318081201|ref|ZP_07988533.1| helicase [Streptomyces sp. SA3_actF]
          Length = 770

 Score = 42.0 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  +D     +  +  G +P+L     + G GLNL   G++ V +  WW+       +E 
Sbjct: 646 GTPVDARDQLVDRFQSGALPVLVLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVED 699

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G  R V V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 700 QATDRAHRIGQTRHVQVHRLLAEGTVEDRIADLVAGKQALADAVL 744


>gi|318057744|ref|ZP_07976467.1| helicase [Streptomyces sp. SA3_actG]
          Length = 939

 Score = 42.0 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  +D     +  +  G +P+L     + G GLNL   G++ V +  WW+       +E 
Sbjct: 815 GTPVDARDQLVDRFQSGALPVLVLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVED 868

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G  R V V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 869 QATDRAHRIGQTRHVQVHRLLAEGTVEDRIADLVAGKQALADAVL 913


>gi|222623475|gb|EEE57607.1| hypothetical protein OsJ_07989 [Oryza sativa Japonica Group]
          Length = 2104

 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI+++TI+
Sbjct: 1216 SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISESTIE 1269

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L++   K  + DL++
Sbjct: 1270 ENILKKANQKRALDDLVI 1287


>gi|41052809|dbj|BAD07677.1| putative photoperiod independent early flowering1 [Oryza sativa
            Japonica Group]
          Length = 2021

 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI+++TI+
Sbjct: 1133 SGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISESTIE 1186

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L++   K  + DL++
Sbjct: 1187 ENILKKANQKRALDDLVI 1204


>gi|222528487|ref|YP_002572369.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222455334|gb|ACM59596.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1139

 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G
Sbjct: 1031 VNRFNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWN-----PAVENQATARAHRLG 1084

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K  V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1085 QKNVVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|144369229|dbj|BAF56217.1| OsRad54 [Oryza sativa Japonica Group]
          Length = 980

 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN L+ F   W+    +Q   R+      + G K+ V++Y  ++  TI+E 
Sbjct: 670 GCGLNL-VGGNRLILFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRFLSTGTIEEK 723

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 724 VYQRQMSKEGLQKVI 738


>gi|237744605|ref|ZP_04575086.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229431834|gb|EEO42046.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 1088

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++    +PL      + G GLNL    ++++    WW++    Q        R  + G
Sbjct: 978  VEDFQNEAVPLFLISLKAGGTGLNLT-KASVVIHLDPWWNISAQNQ-----ATDRAHRIG 1031

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V+ LI +NTI+E +L     K  + D+ +
Sbjct: 1032 QEDTVQVFNLITKNTIEEKILNLQNKKKELSDIFV 1066


>gi|159130376|gb|EDP55489.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           A1163]
          Length = 681

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 515 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 568

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 569 IFQRQSHKQSLSSCVVDS 586


>gi|121700154|ref|XP_001268342.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
 gi|119396484|gb|EAW06916.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 516 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 569

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 570 IFQRQSHKQSLSSCVVDS 587


>gi|195569689|ref|XP_002102841.1| GD20115 [Drosophila simulans]
 gi|194198768|gb|EDX12344.1| GD20115 [Drosophila simulans]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 11/69 (15%)

Query: 132 LVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           ++F+   W+    QQ ++R   +G T+Q        V VY LI + TI+E +LQR R KS
Sbjct: 15  VIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIEERILQRAREKS 66

Query: 189 TIQDLLLNA 197
            IQ ++++ 
Sbjct: 67  EIQRMVISG 75


>gi|238487360|ref|XP_002374918.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
 gi|220699797|gb|EED56136.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 516 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 569

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 570 IFQRQSHKQSLSSCVVDS 587


>gi|156037672|ref|XP_001586563.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980]
 gi|154697958|gb|EDN97696.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 938

 Score = 42.0 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA---HPASCGHGLNLQYGGNILV 133
            N    RL  + PQ +  D     +  +N+      FA      S G G+NL  G + LV
Sbjct: 662 LNLPFLRLDGSTPQAKRQD----LVNTFNKTPASKYFAFLLSAKSGGAGINL-IGASRLV 716

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F + W+     Q + RI      + G KR+V +Y  +    +DE + QR  TK  + D 
Sbjct: 717 LFDVDWNPATDLQAMARI-----HRDGQKRSVKIYRFLMSGGMDEKIYQRQVTKIGLADS 771

Query: 194 LLNALKKE 201
           +++  K E
Sbjct: 772 VMDGKKNE 779


>gi|67538714|ref|XP_663131.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
 gi|40743497|gb|EAA62687.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
          Length = 1776

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 667 GCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 720

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 721 IFQRQSHKQSLSSCVVDS 738


>gi|317058831|ref|ZP_07923316.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
 gi|313684507|gb|EFS21342.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1009

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+     +     K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 890 GSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 943

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + R  + G  R VF Y LI ++TI+E +LQ    KS + D
Sbjct: 944 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLD 985


>gi|256027374|ref|ZP_05441208.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289765340|ref|ZP_06524718.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289716895|gb|EFD80907.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 1088

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++    +PL      + G GLNL    ++++    WW++    Q        R  + G
Sbjct: 978  VEDFQNEAVPLFLISLKAGGTGLNLT-KASVVIHLDPWWNISAQNQ-----ATDRAHRIG 1031

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V+ LI +NTI+E +L     K  + D+ +
Sbjct: 1032 QEDTVQVFNLITKNTIEEKILNLQNKKKELSDIFV 1066


>gi|315917068|ref|ZP_07913308.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690943|gb|EFS27778.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1143

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+     +     K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 1024 GSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 1077

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + R  + G  R VF Y LI ++TI+E +LQ    KS + D
Sbjct: 1078 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLD 1119


>gi|307822478|ref|ZP_07652709.1| SNF2-related protein [Methylobacter tundripaludum SV96]
 gi|307736082|gb|EFO06928.1| SNF2-related protein [Methylobacter tundripaludum SV96]
          Length = 1083

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T ++D   I+ +  G++ +      + G GLNL     ++++   WW+     Q    
Sbjct: 963  GQTRNRDEA-IERFKSGEVNVFLISLKAGGVGLNLTEADTVIIY-DPWWNPAAESQ---- 1016

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                R  + G  + VFVY LI +NT++E ++
Sbjct: 1017 -AADRAHRIGQDKPVFVYKLITENTVEEKII 1046


>gi|162452831|ref|YP_001615198.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
 gi|161163413|emb|CAN94718.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
          Length = 1270

 Score = 42.0 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+ EG  PL      + G G+NL    N+ +    WW+       +E     R  + G
Sbjct: 1137 VREFQEGSAPLFLISLKAGGFGINLTAATNV-IHLDPWWN-----PAVEDQASDRAHRLG 1190

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             +R V +Y L+A  TI+E +L
Sbjct: 1191 QRRPVTIYRLVALGTIEEKML 1211


>gi|115313218|gb|AAI24095.1| Hells protein [Danio rerio]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 669 DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFGSDWNPQADLQ-AQDRCHRI 727

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V VY LI  NTIDE +L+R   K  ++ +++
Sbjct: 728 GQTK--------PVVVYRLITANTIDEKILERASAKRKLEKMVI 763


>gi|257465912|ref|ZP_05630223.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1134

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+     +     K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 1015 GSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 1068

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + R  + G  R VF Y LI ++TI+E +LQ    KS + D
Sbjct: 1069 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLD 1110


>gi|257452288|ref|ZP_05617587.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1134

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+     +     K  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 1015 GSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLTAADTIFIY-DPWWN-----KTVEN 1068

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + R  + G  R VF Y LI ++TI+E +LQ    KS + D
Sbjct: 1069 QAIDRAYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLD 1110


>gi|212542839|ref|XP_002151574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
 gi|210066481|gb|EEA20574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
          Length = 1497

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G  R V VY L++++TI+
Sbjct: 832 AGGLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQTRPVSVYRLVSKDTIE 885

Query: 178 ELVLQRLRTK 187
           E VL+R R K
Sbjct: 886 EEVLERARNK 895


>gi|194760847|ref|XP_001962644.1| GF14336 [Drosophila ananassae]
 gi|292630861|sp|B3MMA5|RAD54_DROAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190616341|gb|EDV31865.1| GF14336 [Drosophila ananassae]
          Length = 791

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  TI+E 
Sbjct: 583 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGTIEEK 636

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 637 ILQRQTHKKSLSSTIID 653


>gi|240274021|gb|EER37539.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           H143]
          Length = 294

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +L A    C  GLNL    N ++    WW        IE   V R  + G KR 
Sbjct: 187 NDSNCTVLLASLNVCSVGLNL-VAANQVILADSWW-----APAIEDQAVDRVYRLGQKRP 240

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ L+ +N+I++ VL + + K T+
Sbjct: 241 TTIWRLVMENSIEDRVLDKQKEKRTL 266


>gi|19115202|ref|NP_594290.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe 972h-]
 gi|3123262|sp|P41410|RAD54_SCHPO RecName: Full=DNA repair protein rhp54; AltName: Full=RAD54 homolog
           1
 gi|2239180|emb|CAB10100.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe]
          Length = 852

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N L+ F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 691 GCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 744

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K ++   +++
Sbjct: 745 IFQRQSHKQSLSSCVVD 761


>gi|28199206|ref|NP_779520.1| hypothetical protein PD1321 [Xylella fastidiosa Temecula1]
 gi|182681936|ref|YP_001830096.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|28057312|gb|AAO29169.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632046|gb|ACB92822.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|307578194|gb|ADN62163.1| hypothetical protein XFLM_00705 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 55

 Score = 42.0 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 29/36 (80%)

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           VF+++++A +T+DELV+ R  +K  +QDLLL A+K+
Sbjct: 5   VFIHHIVAADTVDELVMVRRESKREVQDLLLEAVKR 40


>gi|452690|emb|CAA82750.1| DNA repair protein [Schizosaccharomyces pombe]
          Length = 852

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N L+ F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 691 GCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 744

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K ++   +++
Sbjct: 745 IFQRQSHKQSLSSCVVD 761


>gi|297807991|ref|XP_002871879.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317716|gb|EFH48138.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1061

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    ++++NE + P  +      + G GLNLQ    I++F S W     + QM ++  
Sbjct: 747 DQRGVLLKQFNEPESPYFMFLLSTRAGGLGLNLQTADTIIIFDSDW-----NPQM-DQQA 800

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 801 EDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQA 845


>gi|195353657|ref|XP_002043320.1| GM26909 [Drosophila sechellia]
 gi|194127434|gb|EDW49477.1| GM26909 [Drosophila sechellia]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 11/69 (15%)

Query: 132 LVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           ++F+   W+    QQ ++R   +G T+Q        V VY LI + TI+E +LQR R KS
Sbjct: 15  VIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIEERILQRAREKS 66

Query: 189 TIQDLLLNA 197
            IQ ++++ 
Sbjct: 67  EIQRMVISG 75


>gi|111018652|ref|YP_701624.1| helicase [Rhodococcus jostii RHA1]
 gi|110818182|gb|ABG93466.1| probable helicase [Rhodococcus jostii RHA1]
          Length = 1070

 Score = 42.0 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+ EG  P+      + G GLNL       +    WW+     Q ++R       + G
Sbjct: 962  LREFKEGAAPVFLISLKAGGFGLNLTEADYCFIL-DPWWNPATEAQAVDR-----AHRIG 1015

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V VY LIA++TI++ V+     KS +   +++A
Sbjct: 1016 QTRNVMVYRLIAKDTIEDKVMALKAKKSALFASVMDA 1052


>gi|257463846|ref|ZP_05628233.1| SWF/SNF family helicase [Fusobacterium sp. D12]
 gi|317061380|ref|ZP_07925865.1| metal dependent hydrolase [Fusobacterium sp. D12]
 gi|313687056|gb|EFS23891.1| metal dependent hydrolase [Fusobacterium sp. D12]
          Length = 1134

 Score = 42.0 bits (97), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL     I ++   WW+     + +E   + R  + G  R VF Y LI ++TI+
Sbjct: 1042 TGGVGLNLTAADTIFIY-DPWWN-----KTVENQAIDRAYRLGQDRTVFSYKLILKDTIE 1095

Query: 178  ELVLQRLRTKSTIQD 192
            E +LQ    KS + D
Sbjct: 1096 EKILQLQELKSKLLD 1110


>gi|212534456|ref|XP_002147384.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
 gi|210069783|gb|EEA23873.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
          Length = 808

 Score = 42.0 bits (97), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 642 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 695

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 696 IFQRQSHKQSLSSCVVDS 713


>gi|302549833|ref|ZP_07302175.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302467451|gb|EFL30544.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 948

 Score = 42.0 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 834 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 887

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ ++A+ TI++ + + L  K  + D +L +
Sbjct: 888 QTRPVQVHRIVAEGTIEDRIAELLTRKRALADAVLGS 924


>gi|282862053|ref|ZP_06271116.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282563078|gb|EFB68617.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 979

 Score = 42.0 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +   ++P+      + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 866 VDRFQSAEVPVFLLSLKAAGTGLNLTRAAHV-IHYDRWWN-----PAVEEQATDRAYRIG 919

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ T+++ + + LR+K  + D +L +
Sbjct: 920 QTQPVQVHRLIAEGTVEDRISELLRSKRALADAVLGS 956


>gi|297739617|emb|CBI29799.3| unnamed protein product [Vitis vinifera]
          Length = 1557

 Score = 42.0 bits (97), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     ++ + S W    + Q M       R  + G  + V VY LI + T++
Sbjct: 1290 AGGLGINLTAADTVIFYESDWNPTLDLQAM------DRAHRLGQTKDVTVYRLICKETVE 1343

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR   KST+Q L++  
Sbjct: 1344 EKILQRASQKSTVQQLVMTG 1363


>gi|229819960|ref|YP_002881486.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
 gi|229565873|gb|ACQ79724.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
          Length = 1118

 Score = 42.0 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A L  ++  G T  +D   I+ + EG  P+      + G GLNL    +  V    WW
Sbjct: 971  DAAGLAYSYLDGTTRRRD-AVIRGFAEGTDPVFLISLKAGGVGLNLAMA-DYAVLADPWW 1028

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            +    +Q ++R       + G  + V VY L+A +TI+E V+
Sbjct: 1029 NPATEEQAVDR-----AHRIGQTKPVMVYRLVATDTIEEKVM 1065


>gi|327183628|gb|AEA32075.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1118]
          Length = 1179

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            IQ +N  K P +F     + G G+NL    ++++ +  WW++    Q  +R       + 
Sbjct: 1070 IQHFNSLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRI 1123

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K +V +Y ++ Q+TI+E +++  + K+ +   +LN
Sbjct: 1124 GQKNSVKIYKMVTQDTIEERIIKLQQKKAELAQAILN 1160


>gi|225441914|ref|XP_002278785.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1563

 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     ++ + S W    + Q M       R  + G  + V VY LI + T++
Sbjct: 1290 AGGLGINLTAADTVIFYESDWNPTLDLQAM------DRAHRLGQTKDVTVYRLICKETVE 1343

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +LQR   KST+Q L++  
Sbjct: 1344 EKILQRASQKSTVQQLVMTG 1363


>gi|240145145|ref|ZP_04743746.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|257202823|gb|EEV01108.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|291537657|emb|CBL10769.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            M50/1]
 gi|291537792|emb|CBL10903.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            XB6B4]
          Length = 1099

 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +N   +P+      + G GLNL    +I++ +  WW++    Q        R  + G
Sbjct: 991  VESFNNDDVPVFCISLKAGGTGLNLT-SADIVIHYDPWWNVAVQNQ-----ATDRAHRIG 1044

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V VY L+A+ TI+E ++
Sbjct: 1045 QKHVVTVYKLVAEGTIEEKII 1065


>gi|169607597|ref|XP_001797218.1| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
 gi|160701447|gb|EAT85508.2| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
          Length = 1249

 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G ++ V VY L++++TI+
Sbjct: 509 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQQKPVSVYRLVSKDTIE 562

Query: 178 ELVLQRLRTKSTIQ 191
           E +L+R R K  ++
Sbjct: 563 EEILERARNKRMLE 576


>gi|195497929|ref|XP_002096309.1| GE25130 [Drosophila yakuba]
 gi|194182410|gb|EDW96021.1| GE25130 [Drosophila yakuba]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 11/69 (15%)

Query: 132 LVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           ++F+   W+    QQ ++R   +G T+Q        V VY LI + TI+E +LQR R KS
Sbjct: 3   VIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIEERILQRAREKS 54

Query: 189 TIQDLLLNA 197
            IQ ++++ 
Sbjct: 55  EIQRMVISG 63


>gi|322386968|ref|ZP_08060592.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321269250|gb|EFX52186.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 1037

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+         + G GLNL  G N ++   LWW+       +E   + R  + G +R
Sbjct: 925  FNQGERSAFLISLKAGGVGLNLT-GANTVILVDLWWN-----PAVEAQAIGRAHRIGQER 978

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V VY +I + TI+E + +   TK  +   +L+ 
Sbjct: 979  NVKVYRMITRGTIEEKIQELQDTKRNLVSTILDG 1012


>gi|68491912|ref|XP_710254.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|68491929|ref|XP_710247.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|74679547|sp|Q59KI4|INO80_CANAL RecName: Full=Putative DNA helicase INO80
 gi|46431413|gb|EAK90982.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|46431421|gb|EAK90989.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
          Length = 1387

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 101  IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQR 157
            +Q W       +F      G  GLNL     ++ + S W    + Q M    RIG T+Q 
Sbjct: 1295 VQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQ- 1353

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                   V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1354 -------VKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1387


>gi|299751759|ref|XP_002911684.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
 gi|298409521|gb|EFI28190.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
          Length = 1055

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G  + +  S W    + Q M       R  + G KR VF+Y L+   TIDE 
Sbjct: 798 GVGINLIGGSRLFLIDSDWNPSHDLQAM------ARCHRDGQKRPVFIYRLVTAGTIDEK 851

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR  TK  +   L+ +
Sbjct: 852 IFQRQITKLGLSASLIGS 869


>gi|227543556|ref|ZP_03973605.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227186396|gb|EEI66467.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  L+ K   Q
Sbjct: 2   LIWYGLTWSLELYQQTNARLWRQGQRQP-----VVIHHIITEGTIDENILAALKRKDKTQ 56

Query: 192 DLLLNALK 199
             L+NA+K
Sbjct: 57  LALINAVK 64


>gi|58262478|ref|XP_568649.1| DNA dependent ATPase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230823|gb|AAW47132.1| DNA dependent ATPase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1036

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL     +++F   W   ++ Q M       R  + G KR V VY LI Q TI+EL
Sbjct: 712 GVGLNLTAANKVVIFDPSWNPADDLQAM------DRAFRIGQKRTVEVYRLIGQGTIEEL 765

Query: 180 VLQR 183
           + +R
Sbjct: 766 IYER 769


>gi|260494465|ref|ZP_05814595.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
 gi|260197627|gb|EEW95144.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
          Length = 683

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++    +PL      + G GLNL    ++++    WW++    Q        R  + G
Sbjct: 573 VEDFQNEAVPLFLISLKAGGTGLNLT-KASVVIHLDPWWNISAQNQ-----ATDRAHRIG 626

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  V V+ LI +NTI+E +L     K  + D+ +
Sbjct: 627 QEDTVQVFNLITKNTIEEKILNLQNKKKELSDIFV 661


>gi|227544624|ref|ZP_03974673.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185390|gb|EEI65461.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+++ L W LE +QQ   R+    QRQ      V ++++I + TIDE +L  L+ K   Q
Sbjct: 2   LIWYGLTWSLELYQQTNARLWRQGQRQP-----VVIHHIITEGTIDENILAALKRKDKTQ 56

Query: 192 DLLLNALK 199
             L+NA+K
Sbjct: 57  LALINAVK 64


>gi|308178567|ref|YP_003917973.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307746030|emb|CBT77002.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1071

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  ++  + P+ F    S G G+NL    +  +    WW+ +   Q I+R       + G
Sbjct: 961  IDGFSAEQFPVFFISLKSGGFGINL-TSADYCILLDPWWNPQAEAQAIDRA-----HRIG 1014

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              R V+VY L+A++TI+  VL  L+ K T
Sbjct: 1015 QTRPVYVYRLVAKDTIESKVLA-LQAKKT 1042


>gi|238879929|gb|EEQ43567.1| hypothetical protein CAWG_01805 [Candida albicans WO-1]
          Length = 1388

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 101  IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQR 157
            +Q W       +F      G  GLNL     ++ + S W    + Q M    RIG T+Q 
Sbjct: 1296 VQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQ- 1354

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                   V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1355 -------VKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1388


>gi|213405783|ref|XP_002173663.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001710|gb|EEB07370.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
          Length = 853

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N L+ F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 699 GCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 752

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K ++   +++
Sbjct: 753 IFQRQSHKQSLSSCVVD 769


>gi|298528668|ref|ZP_07016072.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512320|gb|EFI36222.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1387

 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            IQ + EG+  L      + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 1276 IQAFQEGRGDLFLISLKAGGLGLNLT-AADYVIHLDPWWN-----PAVEDQATDRSHRIG 1329

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V VY L+A+NTI+E +++    K  + D LL  
Sbjct: 1330 QENPVTVYRLVAENTIEEKIVRLHAEKRDLADSLLEG 1366


>gi|268566403|ref|XP_002639713.1| C. briggsae CBR-RAD-54 protein [Caenorhabditis briggsae]
          Length = 782

 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 593 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEK 646

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   +++A
Sbjct: 647 MFQRQTHKKALSSCVVDA 664


>gi|325120874|emb|CBZ56429.1| putative SNF2 family N-terminal domain-containing protein [Neospora
           caninum Liverpool]
          Length = 791

 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTI 176
           +CGHGLNL   G + +F  L+W      QMI+     R  + G +  ++ ++YLIA+ T+
Sbjct: 559 ACGHGLNLTAAGTV-IFAELYW---VPGQMIQ--AEDRSHRIGTEFSSIQIHYLIAEGTL 612

Query: 177 DELVLQRLRTK 187
           DE V + L+ K
Sbjct: 613 DETVFRILQRK 623


>gi|158293531|ref|XP_557901.3| AGAP008748-PA [Anopheles gambiae str. PEST]
 gi|157016752|gb|EAL40287.3| AGAP008748-PA [Anopheles gambiae str. PEST]
          Length = 789

 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L+A  TI+E 
Sbjct: 566 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLATGTIEEK 619

Query: 180 VLQR 183
           + QR
Sbjct: 620 IFQR 623


>gi|309364522|emb|CAP24766.2| hypothetical protein CBG_03965 [Caenorhabditis briggsae AF16]
          Length = 1109

 Score = 41.6 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L+   L W+    QQ  +RI      + G K+ VF++ L+  NTI++ 
Sbjct: 1018 GVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YRMGQKKPVFIHRLVTNNTIEQR 1071

Query: 180  VLQRLRTKSTIQDLLLNA 197
            V +  ++K  +   +L+ 
Sbjct: 1072 VAELQKSKLQLASSILDG 1089


>gi|170092399|ref|XP_001877421.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
 gi|164647280|gb|EDR11524.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
          Length = 1291

 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 666 AGGLGINLETADTVIIFDSDWNPQNDLQAM------ARAHRIGQKSHVSVYRFVSKDTME 719

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E VL+R + K  ++  ++N +     H+
Sbjct: 720 EDVLERAKKKMVLEYAIINQMDTSQAHL 747


>gi|296411575|ref|XP_002835506.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629290|emb|CAZ79663.1| unnamed protein product [Tuber melanosporum]
          Length = 812

 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  TI+E 
Sbjct: 650 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEK 703

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           + QR   K ++   +++ ++    H
Sbjct: 704 IFQRQSHKQSLSTSVVDGVEDVERH 728


>gi|241958618|ref|XP_002422028.1| DNA helicase, putative [Candida dubliniensis CD36]
 gi|223645373|emb|CAX40029.1| DNA helicase, putative [Candida dubliniensis CD36]
          Length = 1366

 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 101  IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQR 157
            +Q W       +F      G  GLNL     ++ + S W    + Q M    RIG T+Q 
Sbjct: 1274 VQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQ- 1332

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                   V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1333 -------VKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1366


>gi|299755187|ref|XP_001828488.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
 gi|298411108|gb|EAU93321.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
          Length = 1471

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            + G GLNLQ    +++F S W    DL + Q    RIG T        RAV +   I + 
Sbjct: 980  AGGLGLNLQTADTVIIFDSDWNPHADL-QAQDRAHRIGQT--------RAVLILRFITEK 1030

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +++E + QR R K  I D ++ A
Sbjct: 1031 SVEEAMYQRARYKLDIDDKVIQA 1053


>gi|288917855|ref|ZP_06412216.1| SNF2-related protein [Frankia sp. EUN1f]
 gi|288350783|gb|EFC84999.1| SNF2-related protein [Frankia sp. EUN1f]
          Length = 1198

 Score = 41.6 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            A ++  +  G T D+    ++ + EG  P+      + G GLNL    +       WW+ 
Sbjct: 1072 AGIEHCYLDGSTRDR-AGVLRRFKEGSAPVFLISLKAGGSGLNLTEA-DYCFLLDPWWNP 1129

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                Q ++R       + G  R V VY L+A++TI+E V+
Sbjct: 1130 ATEAQAVDR-----THRIGQSRNVMVYRLVARDTIEEKVM 1164


>gi|242790191|ref|XP_002481516.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718104|gb|EED17524.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 808

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 642 GCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 695

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 696 IFQRQSHKQSLSSCVVDS 713


>gi|298710164|emb|CBJ31874.1| Probable chromatin remodelling complex ATPase chain [Ectocarpus
           siliculosus]
          Length = 1485

 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ    ++++ S W    + Q M       R  + G KR V VY L+ +NT++
Sbjct: 647 AGGLGINLQTADTVILYDSDWNPQADLQAM------DRAHRIGQKRPVSVYRLVTENTVE 700

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E V++R + K  +  +++
Sbjct: 701 EKVVERAQQKLKLDAMIV 718


>gi|297583813|ref|YP_003699593.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297142270|gb|ADH99027.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 919

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           IP +     + G GLNL     +L  F  WW+     Q  +R+      + G K+AV V+
Sbjct: 816 IPFMIISLRAGGFGLNLTEASAVL-HFDRWWNPAVEDQATDRV-----HRIGQKQAVEVH 869

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+A+ TI+E +   ++ K  +Q+ L++ 
Sbjct: 870 TLMAEGTIEERIDDLIQKKQQLQEALIDG 898


>gi|268565237|ref|XP_002639379.1| Hypothetical protein CBG03965 [Caenorhabditis briggsae]
          Length = 1094

 Score = 41.6 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L+   L W+    QQ  +RI      + G K+ VF++ L+  NTI++ 
Sbjct: 1003 GVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YRMGQKKPVFIHRLVTNNTIEQR 1056

Query: 180  VLQRLRTKSTIQDLLLNA 197
            V +  ++K  +   +L+ 
Sbjct: 1057 VAELQKSKLQLASSILDG 1074


>gi|116180352|ref|XP_001220025.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
 gi|88185101|gb|EAQ92569.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
          Length = 1644

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ TI+
Sbjct: 858 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTIE 911

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V+ R R K  ++ L + A
Sbjct: 912 EEVVNRARNKLFLEYLTIQA 931


>gi|218885893|ref|YP_002435214.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756847|gb|ACL07746.1| Non-specific serine/threonine protein kinase [Desulfovibrio vulgaris
            str. 'Miyazaki F']
          Length = 1069

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  +IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 965  NTPEIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVESQATDRTHRIGQTRQ 1018

Query: 165  VFVYYLIAQNTIDELVLQ 182
            VF Y LI +NT++E +L+
Sbjct: 1019 VFSYKLICENTVEEKILK 1036


>gi|17540630|ref|NP_502137.1| hypothetical protein F54E12.2 [Caenorhabditis elegans]
 gi|3873712|emb|CAA97421.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3877578|emb|CAB05213.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1091

 Score = 41.6 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+ G GLNL  GGN LV   L W+    QQ  +RI      + G K+ VF++ L+ + TI
Sbjct: 994  AAGGVGLNLT-GGNHLVMVDLHWNPALEQQAFDRI-----YRMGQKKDVFIHRLVTKGTI 1047

Query: 177  DELVLQRLRTKSTIQDLLL--NALKK 200
            ++ V+   + K  +   +L  NA +K
Sbjct: 1048 EQRVVMLQKDKVALASSVLDGNATRK 1073


>gi|260905640|ref|ZP_05913962.1| DNA/RNA helicase, superfamily II, SNF2 family protein
           [Brevibacterium linens BL2]
          Length = 1012

 Score = 41.6 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----QKAFP----QGRTLDKDPC 99
           VH  K+ AL   +E   A     IV   F S L ++     ++  P     G T ++   
Sbjct: 833 VHSSKLAALMERLEDVVAEGHRSIVFSQFTSFLDKVAEDLDRRGVPYVVLDGSTRNRGQ- 891

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+  G  P+      + G GLNL     + +    WW+     Q I+R       + 
Sbjct: 892 VVDEFRSGAAPVFLISLKAGGFGLNLTEADYVFLM-DPWWNPATENQAIDR-----AHRI 945

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  + V VY  +A+ TI+E VL   + K+ + D L+
Sbjct: 946 GQTKNVMVYRYVAEGTIEEKVLALQKKKAELFDSLM 981


>gi|327308794|ref|XP_003239088.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
 gi|326459344|gb|EGD84797.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
          Length = 808

 Score = 41.6 bits (96), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 642 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 695

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 696 IFQRQSHKQSLSSCVIDS 713


>gi|309360381|emb|CAP31417.2| CBR-RAD-54 protein [Caenorhabditis briggsae AF16]
          Length = 1079

 Score = 41.6 bits (96), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 890 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEK 943

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   +++A
Sbjct: 944 MFQRQTHKKALSSCVVDA 961


>gi|313233227|emb|CBY24342.1| unnamed protein product [Oikopleura dioica]
          Length = 1202

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+  F+Y L+A  TI+E 
Sbjct: 578 GCGLNL-IGANRLIMFDPDWNPANDDQAMARVW-----RDGQKKRCFIYRLVAAGTIEEK 631

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +LQR   K  +  ++++A
Sbjct: 632 MLQRQLHKKALSGVVVDA 649


>gi|220914252|ref|YP_002489561.1| non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
 gi|219861130|gb|ACL41472.1| Non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
          Length = 1160

 Score = 41.6 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+  G  P+      + G GLNL     + +    WW+     Q ++R       + G
Sbjct: 1051 VSEFKNGSAPVFLISLKAGGFGLNLTEADYVFLL-DPWWNPASEAQAVDR-----THRIG 1104

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              R V VY L+A++TI+E V+  L+T+ +
Sbjct: 1105 QARNVMVYRLVAKDTIEEKVMA-LKTRKS 1132


>gi|71909481|ref|YP_287068.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
 gi|71849102|gb|AAZ48598.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
          Length = 1091

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T+D++   I+ + + ++P+      + G GLNL    + ++ +  WW+       +E 
Sbjct: 970  GDTVDRE-VPIRRFQDCEVPIFLISLKAGGVGLNLT-AADTVIHYDPWWN-----PAVEN 1022

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                R  + G  + VFVY LI   +I+E +L
Sbjct: 1023 QATDRAHRLGQDKPVFVYKLIVSGSIEEKIL 1053


>gi|310779269|ref|YP_003967602.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
 gi|309748592|gb|ADO83254.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
          Length = 920

 Score = 41.6 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D   ++  +  G T D+     +  N+ K  +      + G GLNL     I ++   WW
Sbjct: 790 DKHNIKHLYMTGATKDRQSLVEKFQNDKKCKVFVMTLKTGGVGLNLTAADTIFIY-DPWW 848

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +     Q ++R       + G  R VF Y LI + TI+E +L+    KS + + L+++
Sbjct: 849 NKTAEDQAVDR-----SHRMGQDRTVFSYKLITKGTIEEKILKLQEEKSRLFEKLISS 901


>gi|296814920|ref|XP_002847797.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
 gi|238840822|gb|EEQ30484.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 653 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 706

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 707 IFQRQSHKQSLSSCVVDS 724


>gi|229817614|ref|ZP_04447896.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
 gi|229785403|gb|EEP21517.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
          Length = 1229

 Score = 41.6 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N   +P+      +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1120 VNQFNMDDVPVFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQSQATDR-----AHRIG 1173

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + V VY ++AQ+TI+E +L+  + KS +
Sbjct: 1174 QTQDVNVYQIVAQHTIEERILRLQKEKSAL 1203


>gi|294462184|gb|ADE76644.1| unknown [Picea sitchensis]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           LL +    CG  LNL  GGN LV F   W+    +Q   R+      + G K+ V++Y  
Sbjct: 73  LLSSKAGGCG--LNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYIYRF 124

Query: 171 IAQNTIDELVLQRLRTKSTIQDLL 194
           +   TI+E V QR  +K  +Q ++
Sbjct: 125 LTTGTIEEKVYQRQMSKEGLQKVV 148


>gi|168066598|ref|XP_001785222.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162663184|gb|EDQ49963.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1727

 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW----DLEEHQQMIERIGVTRQRQAGFKR 163
            KI L      S G G+NL  G + ++F+   W    DL+  Q    RIG TR+       
Sbjct: 1094 KIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDLQ-AQDRCHRIGQTRE------- 1144

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1145 -VHIYRLISESTIEENILKKANQKRILDDLVIQS 1177


>gi|226360762|ref|YP_002778540.1| helicase [Rhodococcus opacus B4]
 gi|226239247|dbj|BAH49595.1| putative helicase [Rhodococcus opacus B4]
          Length = 1073

 Score = 41.2 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D A +  A+  G T  +    ++++ EG  P+      + G GLNL       +    WW
Sbjct: 945  DDAGIAHAYLDGATRRRGD-VLRDFKEGDAPVFLISLKAGGFGLNLTEADYCFIL-DPWW 1002

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q ++R       + G  R V VY LIA++TI++ V+     KS +   +++A
Sbjct: 1003 NPATEAQAVDR-----AHRIGQTRNVMVYRLIAKDTIEDKVMALKAKKSALFSSVMDA 1055


>gi|170041242|ref|XP_001848380.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167864826|gb|EDS28209.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 787

 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 565 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLATGSIEEK 618

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  + + +++
Sbjct: 619 IFQRQTHKKALSNTVVD 635


>gi|116672340|ref|YP_833273.1| SNF2-related protein [Arthrobacter sp. FB24]
 gi|116612449|gb|ABK05173.1| SNF2-related protein [Arthrobacter sp. FB24]
          Length = 1154

 Score = 41.2 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+  G  P+      + G GLNL     + +    WW+     Q ++R       + G
Sbjct: 1045 VNEFKNGSAPVFLISLKAGGFGLNLTEADYVFLL-DPWWNPASEAQAVDR-----THRIG 1098

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              R V VY L+A++TI+E V+     KS +
Sbjct: 1099 QARNVMVYRLVAKDTIEEKVMALKAKKSQL 1128


>gi|300786586|ref|YP_003766877.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299796100|gb|ADJ46475.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 838

 Score = 41.2 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G +P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 725 VARFQAGAVPVFLLSLKAAGTGLNLTRADHV-VHFDRWWN-----PAVEDQATDRAYRIG 778

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V V+ L+A+ T+++ +   LR K  + + +L
Sbjct: 779 QTRPVQVHRLVAEGTVEDRIAAMLREKRALAEAVL 813


>gi|134301077|ref|YP_001114573.1| SNF2 helicase associated domain-containing protein [Desulfotomaculum
            reducens MI-1]
 gi|134053777|gb|ABO51748.1| SNF2 helicase associated domain protein [Desulfotomaculum reducens
            MI-1]
          Length = 1084

 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 18/138 (13%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNS-------DLARLQKAF--PQGRTLDKDPCTI-Q 102
            K++ L  IIE    N   ++V   F S       +L RL K++    G+T  KD   + Q
Sbjct: 917  KLEQLMEIIENTLENKRRLLVFSQFASMLGIICEELDRLNKSYFYLDGQTPAKDRVEMTQ 976

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +N G+  L      + G GLNL     + + + LWW+       IE     R  + G K
Sbjct: 977  RFNNGEKDLFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAIEEQAAGRAHRMGQK 1030

Query: 163  RAVFVYYLIAQNTIDELV 180
              V V  LI + TI+E +
Sbjct: 1031 NCVQVIKLITKGTIEEKI 1048


>gi|14548140|gb|AAK66797.1|U40238_20 SWI/SNF family helicase [uncultured crenarchaeote 4B7]
          Length = 570

 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  + +G+  L+ A   +   G+NL      ++F  L W    H+Q  +R+      + G
Sbjct: 454 IDRFQKGQTKLMIAGLRAGNVGINLT-TAKYVIFAELDWSPAIHRQAEDRL-----HRIG 507

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  VF YYL+ + T+DE V + L  KS   D +L+
Sbjct: 508 QKNTVFAYYLVGKGTLDEHVAEILVDKSYEIDTILD 543


>gi|320011393|gb|ADW06243.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 964

 Score = 41.2 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 851 VDGFQSGEVPVFLLSLKAAGTGLNLTRAAHV-IHYDRWWN-----PAVEEQATDRAYRIG 904

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ T+++ + + L++K  + D +L +
Sbjct: 905 QTQPVQVHRLIAEGTVEDRISELLQSKRALADAVLGS 941


>gi|295835764|ref|ZP_06822697.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825680|gb|EFG64393.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 788

 Score = 41.2 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  ++     +  +  G +P+L     + G GLNL   G++ V +  WW+       +E 
Sbjct: 664 GTPVEARDALVDRFQSGALPVLVLSLKAAGTGLNLTRAGHV-VHYDRWWN-----PAVED 717

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G  R V V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 718 QATDRAHRIGQTRHVQVHRLLAEGTVEDRIADLVAGKQALADAVL 762


>gi|190345413|gb|EDK37294.2| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score = 41.2 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + L+ F   W+     Q + RI      + G KR VF+Y L+    IDE 
Sbjct: 679 GVGLNL-VGASRLILFDNDWNPSVDLQAMARI-----HRDGQKRPVFIYRLLTTGCIDEK 732

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K+ + D  L+
Sbjct: 733 IFQRQLMKNNLSDKFLD 749


>gi|94309439|ref|YP_582649.1| SNF2-like protein [Cupriavidus metallidurans CH34]
 gi|93353291|gb|ABF07380.1| Superfamily II DNA/RNA helicase, SNF2 family [Cupriavidus
            metallidurans CH34]
          Length = 1025

 Score = 41.2 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + +V    WW+     Q      + R  + G +R V VY LIA  TI+E 
Sbjct: 930  GFGLNLT-AADYIVIADPWWNPAAEDQ-----AMGRAHRIGQQRPVTVYRLIAAGTIEER 983

Query: 180  VLQRLRTKSTIQDLLLNALKKETI 203
            ++   + K  + D +L+A+  E I
Sbjct: 984  IVDLHQGKRALADGVLDAMDGEAI 1007


>gi|291449545|ref|ZP_06588935.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291352492|gb|EFE79396.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 946

 Score = 41.2 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+ P+      + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 832 VARFQSGEAPVFLLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEAQATDRAYRIG 885

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 886 QTQPVQVHRLIAEGTIEDRIAGMLARKQGLADAVLGS 922


>gi|239946094|ref|ZP_04698031.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|239992567|ref|ZP_04713231.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 1005

 Score = 41.2 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+ P+      + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 891 VARFQSGEAPVFLLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEAQATDRAYRIG 944

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 945 QTQPVQVHRLIAEGTIEDRIAGMLARKQGLADAVLGS 981


>gi|152975221|ref|YP_001374738.1| non-specific serine/threonine protein kinase [Bacillus cereus subsp.
            cytotoxis NVH 391-98]
 gi|152023973|gb|ABS21743.1| Non-specific serine/threonine protein kinase [Bacillus cytotoxicus
            NVH 391-98]
          Length = 1066

 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 960  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPSVEQQ-----AADRAYRMGQKN 1013

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A+ TI+E
Sbjct: 1014 TVQVIKLVARGTIEE 1028


>gi|299751086|ref|XP_001830045.2| transcription regulator [Coprinopsis cinerea okayama7#130]
 gi|298409213|gb|EAU91710.2| transcription regulator [Coprinopsis cinerea okayama7#130]
          Length = 1441

 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 768 AGGLGINLETADTVIIFDSDWNPQNDLQAM------ARAHRIGQKSHVSVYRFVSKDTME 821

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E VL+R + K  ++  ++N +     H+
Sbjct: 822 EDVLERAKRKMVLEYAIINQMDTTQAHL 849


>gi|281203153|gb|EFA77354.1| chromo domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1842

 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     +++F S W    + Q         R  + G K  V +Y L++++TI+E 
Sbjct: 1099 GLGINLSTADTVIIFDSDWNPQNDLQ------AEARAHRIGQKNTVNIYRLVSKSTIEEE 1152

Query: 180  VLQRLRTKSTIQDLLLNALKKETIHV 205
            +L+R + K  +  L++ +++K +   
Sbjct: 1153 ILERAKQKMVLDHLVIQSMEKSSTKT 1178


>gi|30687235|ref|NP_197432.2| homeotic gene regulator, putative [Arabidopsis thaliana]
 gi|332005300|gb|AED92683.1| Homeotic gene regulator [Arabidopsis thaliana]
          Length = 1064

 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    ++++NE   P  +      + G GLNLQ    I++F S W     + QM ++  
Sbjct: 748 DQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDW-----NPQMDQQ-A 801

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 802 EDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQA 846


>gi|323449406|gb|EGB05294.1| hypothetical protein AURANDRAFT_17107 [Aureococcus anophagefferens]
          Length = 92

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L A  A+ G GLN+    N+L F   WW+   H Q ++     R  + G  R V V
Sbjct: 9   SVNVLLATVATAGVGLNIVEANNVL-FLDRWWNPTVHDQAMD-----RTHRLGQTRPVDV 62

Query: 168 YYLIAQNTIDELV 180
            +L   +T+DE++
Sbjct: 63  RFLDGVDTVDEVM 75


>gi|300855333|ref|YP_003780317.1| putative SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
 gi|300435448|gb|ADK15215.1| predicted SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1080

 Score = 41.2 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N+GK  +      + G GLNL    ++++ F  WW+       +E     R  + G
Sbjct: 967  VKKFNKGKNSVFLISLKAGGTGLNLT-SADVVIHFDPWWN-----TAVEEQAADRTHRIG 1020

Query: 161  FKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNAL 198
             K  V V  +IA+ TI+E +VL +   K  I+ L+ N L
Sbjct: 1021 QKNVVEVIKIIAKGTIEEKIVLLQNEKKKLIEKLMENKL 1059


>gi|146419519|ref|XP_001485721.1| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score = 41.2 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + L+ F   W+     Q + RI      + G KR VF+Y L+    IDE 
Sbjct: 679 GVGLNL-VGASRLILFDNDWNPSVDLQAMARI-----HRDGQKRPVFIYRLLTTGCIDEK 732

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K+ + D  L+
Sbjct: 733 IFQRQLMKNNLSDKFLD 749


>gi|294949971|ref|XP_002786396.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
 gi|239900688|gb|EER18192.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN LV F   W+    +Q + RI      + G  +  ++Y L++  TI+E 
Sbjct: 583 GCGLNL-IGGNRLVMFDPDWNPANDRQAMARIW-----RDGQTKVCWIYRLLSTGTIEEK 636

Query: 180 VLQRLRTKSTIQDLLL 195
           + QR   K ++ +L++
Sbjct: 637 IYQRQMKKDSLSELVV 652


>gi|58266666|ref|XP_570489.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110324|ref|XP_775989.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74685408|sp|Q5KHM0|INO80_CRYNE RecName: Full=Putative DNA helicase INO80
 gi|50258657|gb|EAL21342.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57226722|gb|AAW43182.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1765

 Score = 41.2 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+     Q ++R       + G  + V VY L+A+ TI+E 
Sbjct: 1532 GLGINLT-AADTVIFYDHDWNPSSDAQAMDR-----AHRVGQTKQVTVYRLVARGTIEER 1585

Query: 180  VLQRLRTKSTIQDLLL 195
            +LQ  R K  IQD+++
Sbjct: 1586 ILQMARGKKDIQDVVV 1601


>gi|325956842|ref|YP_004292254.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
 gi|325333407|gb|ADZ07315.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
          Length = 1179

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            IQ +N  K P +F     + G G+NL    ++++ +  WW++    Q  +R       + 
Sbjct: 1070 IQHFNSLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRI 1123

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K +V +Y ++ Q+T++E +++  + K+ +   +LN
Sbjct: 1124 GQKNSVKIYKMVTQDTVEERIIKLQQKKAELAQAILN 1160


>gi|315038431|ref|YP_004031999.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
 gi|312276564|gb|ADQ59204.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
          Length = 1180

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            IQ +N  K P +F     + G G+NL    ++++ +  WW++    Q  +R       + 
Sbjct: 1071 IQHFNSLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRI 1124

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K +V +Y ++ Q+T++E +++  + K+ +   +LN
Sbjct: 1125 GQKNSVKIYKMVTQDTVEERIIKLQQKKAELAQAILN 1161


>gi|50311185|ref|XP_455616.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644752|emb|CAG98324.1| KLLA0F11814p [Kluyveromyces lactis]
          Length = 931

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+  I +      S G GLNL  G + LV F   W+     Q + RI      + G +R 
Sbjct: 700 NDPSIFVFLLSAKSGGVGLNL-IGASRLVLFDNDWNPSIDLQAMSRI-----HRDGQRRP 753

Query: 165 VFVYYLIAQNTIDELVLQR 183
            F+Y L+    IDE +LQR
Sbjct: 754 CFIYRLVTTGCIDEKILQR 772


>gi|156843751|ref|XP_001644941.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115595|gb|EDO17083.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1507

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 800 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 853

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 854 EEVLERARKKMILE 867


>gi|70729334|ref|YP_259071.1| helicase/SNF2 domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68343633|gb|AAY91239.1| helicase/SNF2 family domain protein [Pseudomonas fluorescens Pf-5]
          Length = 875

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           A   G+T D+    ++++  GK+ +      + G GLNL    + ++ +  WW+     Q
Sbjct: 745 ALLTGQTRDRR-TPVRDFQSGKLQIFLISLKAGGVGLNLTEA-DTVIHYDPWWNPATESQ 802

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +R       + G ++ VFVY LIA+ T++E +    + KS +   +L+  K
Sbjct: 803 ATDRA-----YRIGQEKPVFVYKLIARGTVEEKIQHLQQEKSDLAAGVLDGRK 850


>gi|50293735|ref|XP_449279.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528592|emb|CAG62253.1| unnamed protein product [Candida glabrata]
          Length = 1476

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 788 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 841

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 842 EEVLERARKKMILE 855


>gi|170739234|ref|YP_001767889.1| non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
 gi|168193508|gb|ACA15455.1| Non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
          Length = 1120

 Score = 41.2 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 24/156 (15%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC------------T 100
            K+  L+ ++E   A    ++V   F S L  ++       TL K PC             
Sbjct: 955  KLDRLDELLESLIAEGRRVLVFSQFTSMLDLIKPRL----TLAKTPCLELTGRSRDRAEV 1010

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  G+ P+      + G GLNL    + ++ +  WW+     Q I+R       + G
Sbjct: 1011 VRRFEAGEAPVFLISLKAGGTGLNL-VAADTVILYDPWWNPAVEAQAIDR-----AHRIG 1064

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFV+ L+A  TI+E +      K  + D L +
Sbjct: 1065 QDKPVFVHKLVASRTIEEKMGVLKERKGALADSLFD 1100


>gi|118576973|ref|YP_876716.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
 gi|118195494|gb|ABK78412.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
          Length = 574

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  + EG+  L+ A   +   G+NL      ++F  L W    H+Q  +R+      + G
Sbjct: 454 IDSFQEGRSKLMIAGLRAGNVGINLSRA-RYVIFAELDWSPAIHRQAEDRL-----HRIG 507

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  VF YYLI   T+DE V   L  KS   D +++
Sbjct: 508 QKNTVFAYYLIGNGTLDEHVANILVDKSYEIDSIMD 543


>gi|302504353|ref|XP_003014135.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
 gi|291177703|gb|EFE33495.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
          Length = 790

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 624 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 677

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 678 IFQRQSHKQSLSSCVVDS 695


>gi|198417079|ref|XP_002130103.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
          Length = 775

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T+ K    ++++N    P  +      + G GLNL  G N LV F   W+    +Q + R
Sbjct: 576 TIKKRAKVVEKFNNPSSPEFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMAR 634

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G K+  F+Y L+   TI+E + QR   K  +   +++
Sbjct: 635 VW-----RDGQKKPCFIYRLLGTGTIEEKIFQRQAHKKALSSCVVD 675


>gi|325964972|ref|YP_004242878.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
 gi|323471059|gb|ADX74744.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
          Length = 1144

 Score = 41.2 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+  G  P+      + G GLNL     + +    WW+     Q ++R       + G
Sbjct: 1035 VNEFKNGSAPVFLISLKAGGFGLNLTEADYVFLL-DPWWNPASEAQAVDR-----THRIG 1088

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              R V VY L+A++TI+E V+     KS +
Sbjct: 1089 QARNVMVYRLVAKDTIEEKVMALKARKSQL 1118


>gi|198428806|ref|XP_002129178.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
           intestinalis]
          Length = 936

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 17/102 (16%)

Query: 101 IQEWNEGKIPLLFAHPASC---GHGLNLQYGGNILVFFSLWW---DLEEHQQMIERIGVT 154
           I E+N  + P LF    S    G G+NL     ++++ S W    DL+  Q    RIG T
Sbjct: 773 IDEYN--RDPDLFIFLLSTRAGGLGINLTSADTVVIYDSDWNPQNDLQ-AQDRCHRIGQT 829

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R        +V +Y  ++ NT+D+ +++R   K  ++ +++N
Sbjct: 830 R--------SVLIYRFVSSNTVDQFMVERAEAKRVLERMIIN 863


>gi|145614554|ref|XP_362144.2| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
 gi|145021462|gb|EDK05591.1| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
          Length = 1654

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G KR V VY L+A+ T++
Sbjct: 859 AGGLGINLMTADTVIIYDSDWNPQADLQAM------ARAHRIGQKRPVNVYRLVAKQTVE 912

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E V+ R R K  ++ L + A
Sbjct: 913 EEVVNRARNKLFLEYLTIQA 932


>gi|77460089|ref|YP_349596.1| SNF2-like [Pseudomonas fluorescens Pf0-1]
 gi|77384092|gb|ABA75605.1| putative helicase [Pseudomonas fluorescens Pf0-1]
          Length = 896

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           A   G+T D+    ++E+  GK  +      + G GLNL     + + +  WW+     Q
Sbjct: 766 ALLTGQTRDRR-TPVKEFQSGKRQIFLISLKAGGVGLNLTEADTV-IHYDPWWNPATENQ 823

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +R       + G ++ VFVY +IA+ T++E +    R KS +   +L+  K
Sbjct: 824 ATDRA-----YRIGQEKPVFVYKMIARGTVEEKIQLLQREKSDLAAGVLDGRK 871


>gi|19704495|ref|NP_604057.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
 gi|19714769|gb|AAL95356.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
          Length = 1089

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +    +PL      + G GLNL    ++++    WW++    Q        R  + G
Sbjct: 979  VENFQNEAVPLFLISLKAGGTGLNLT-KASVVIHLDPWWNISAQNQ-----ATDRAHRIG 1032

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V+ LI +NTI+E +L     K  + D+ +
Sbjct: 1033 QEDTVQVFNLITKNTIEEKILNLQSKKKELSDIFV 1067


>gi|226307557|ref|YP_002767517.1| helicase [Rhodococcus erythropolis PR4]
 gi|226186674|dbj|BAH34778.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 1060

 Score = 41.2 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++E+  G  P+      + G GLNL       +    WW+     Q ++R       + G
Sbjct: 952  LEEFKSGVAPVFLISLKAGGFGLNLTEADYCFIL-DPWWNPAAEAQAVDR-----THRIG 1005

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V VY LIA++TI+E V+     KS +   +++A
Sbjct: 1006 QTRNVMVYRLIAKDTIEEKVMALKAKKSALFSNVMDA 1042


>gi|149200479|ref|ZP_01877493.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
 gi|149136441|gb|EDM24880.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
          Length = 1021

 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGR 92
            EE   KE+   K +  + ++E  + ++   +V   F S L+ +++          +  G 
Sbjct: 845  EEFKAKEIESSKFQLFQELVEEIRDSSHRALVFSQFTSMLSLMREWLDEQGIKYCYLDGS 904

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  +     Q   +  I        + G GLNL  G + ++ +  WW+      M+    
Sbjct: 905  TKKRQDLVDQFNEDDSIQFFLLSLKAGGTGLNLT-GADTVIHYDNWWN-----PMVVNQA 958

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R  + G  R V +  L+AQNTI++ ++Q  +TK  + D L+
Sbjct: 959  SDRAHRIGQTRNVNIIKLVAQNTIEDKIIQLQKTKEKLFDQLV 1001


>gi|299753319|ref|XP_001833199.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298410246|gb|EAU88472.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 840

 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + ++N+  GK  +      + G G+NL  G N L+ F   W+    QQ + R+      +
Sbjct: 658 VDQFNDPNGKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALARVW-----R 711

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  FVY  I+  TI+E + QR  +K  +   +++
Sbjct: 712 DGQKKECFVYRFISTGTIEEKIFQRQASKQALSSAVVD 749


>gi|17508659|ref|NP_492438.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-54) [Caenorhabditis elegans]
 gi|6580237|emb|CAB63308.1| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|6580248|emb|CAA22254.2| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 818

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 628 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKMCFIYRLLATGSIEEK 681

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   +++A
Sbjct: 682 MFQRQTHKKALSSCVVDA 699


>gi|162312570|ref|XP_001713118.1| SNF2 family helicase Swr1 [Schizosaccharomyces pombe 972h-]
 gi|46397086|sp|O13682|SWR1_SCHPO RecName: Full=Helicase swr1
 gi|159884045|emb|CAA22447.2| SNF2 family helicase Swr1 [Schizosaccharomyces pombe]
          Length = 1288

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 12/94 (12%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQRQAGF 161
            N+ KIP+      S G G+NL  G + ++F+   W+ +   + Q    RIG TR      
Sbjct: 1055 NDDKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD----- 1108

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V +Y LI++ T++  +L+R   K  +  +++
Sbjct: 1109 ---VHIYRLISEYTVESNMLRRANQKRMLDKIVI 1139


>gi|326484392|gb|EGE08402.1| DNA repair and recombination protein RAD54 [Trichophyton equinum
           CBS 127.97]
          Length = 820

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 654 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 707

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 708 IFQRQSHKQSLSSCVVDS 725


>gi|167757932|ref|ZP_02430059.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
 gi|167664364|gb|EDS08494.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G    L A+    G  LNLQ+  NI ++ S  WDL +  Q  +R+      + G    V+
Sbjct: 348 GDSDYLIANRNCAGFSLNLQFCHNI-IYMSNDWDLGKRMQSEDRV-----HRLGQGHDVY 401

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +  + A+NTIDE +L+ L  K  I + + + + K
Sbjct: 402 ITDICAENTIDEQILKCLSRKENILECIKSDIGK 435


>gi|254578924|ref|XP_002495448.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
 gi|238938338|emb|CAR26515.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
          Length = 1478

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 780 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 833

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 834 EEVLERARKKMILE 847


>gi|195342153|ref|XP_002037666.1| GM18177 [Drosophila sechellia]
 gi|194132516|gb|EDW54084.1| GM18177 [Drosophila sechellia]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 513 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 566

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 567 ILQRQTHKKSLSSTIID 583


>gi|119964500|ref|YP_949262.1| helicase/SNF2 family domain-containing protein [Arthrobacter
            aurescens TC1]
 gi|119951359|gb|ABM10270.1| putative helicase/SNF2 family domain protein [Arthrobacter aurescens
            TC1]
          Length = 1151

 Score = 41.2 bits (95), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+  G  P+      + G GLNL     + +    WW+     Q ++R       + G
Sbjct: 1042 VSEFKNGAAPVFLISLKAGGFGLNLTEADYVFLL-DPWWNPASEAQAVDR-----THRIG 1095

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              R V VY L+A++TI+E V+     KS +
Sbjct: 1096 QARNVMVYRLVAKDTIEEKVMALKAKKSQL 1125


>gi|193083817|gb|ACF09499.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           SAT1000-23-F7]
          Length = 571

 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 91  GRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G   DKD    I  +  G   L+ A   +   G+NL      ++F  L W    H+Q  +
Sbjct: 443 GGQTDKDRQANIDRFQNGDTKLMIAGLRAGNLGINLTRA-KYVIFGELDWSPAIHRQAED 501

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K  VF YYLI   T+DE V   L  KS   D +++
Sbjct: 502 RL-----HRIGQKNTVFAYYLIGNGTLDEHVANILVDKSYEIDTIMD 543


>gi|302525636|ref|ZP_07277978.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
 gi|302434531|gb|EFL06347.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 601 VAAFQSGEVPVFLLSLKAGGVGLNLTQATHV-IHYDRWWN-----PAVEDQATDRAYRIG 654

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ T++E +   L TK  + D ++ A
Sbjct: 655 QDRPVQVHRLIAEGTLEERIAAVLETKRGLADAVVGA 691


>gi|307199888|gb|EFN80285.1| DNA repair and recombination protein RAD54B [Harpegnathos saltator]
          Length = 509

 Score = 41.2 bits (95), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +E KI LL A     G GLNL  G + LV F   W+     Q + RI      + G K+ 
Sbjct: 311 DESKILLLSAKAG--GVGLNLP-GASRLVLFDSDWNPASDMQAMARIW-----RDGQKKD 362

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V++Y L+   TI+E + QR  +K+ + + +++
Sbjct: 363 VYIYRLLTTGTIEEKIYQRQISKAGLSEFVVD 394


>gi|281211035|gb|EFA85201.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2415

 Score = 41.2 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQRQAGFK 162
            + KI L      S G GLNL  G + ++F+   W+     + Q    RIG TR+      
Sbjct: 1327 DNKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDRCHRIGQTRE------ 1379

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V +Y LI Q+TI+E +L++   K  + D+++  
Sbjct: 1380 --VNIYRLITQHTIEENILRKSNQKRQLDDVVIQG 1412


>gi|237654129|ref|YP_002890443.1| SNF2-related protein [Thauera sp. MZ1T]
 gi|237625376|gb|ACR02066.1| SNF2-related protein [Thauera sp. MZ1T]
          Length = 1100

 Score = 41.2 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++ +G++P+      + G GLNL    + ++ +  WW+     Q  +     R  + G
Sbjct: 985  VEDFQKGRVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATD-----RAHRIG 1038

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + VFV+ L+   +I+E +L     K+ + + +L+
Sbjct: 1039 QDKPVFVFKLVCAGSIEEKILALQERKAALAESVLS 1074


>gi|241640781|ref|XP_002410926.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503624|gb|EEC13118.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + RI      + G K+  +VY L++  +I+E 
Sbjct: 487 GCGLNL-IGANRLVMFDPDWNPANDAQAMARIW-----RDGQKKPCYVYRLVSSGSIEEK 540

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +LQR   K  +   ++++
Sbjct: 541 ILQRQTHKKALSSCVVDS 558


>gi|315053993|ref|XP_003176371.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
 gi|311338217|gb|EFQ97419.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
          Length = 831

 Score = 41.2 bits (95), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 665 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 718

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 719 IFQRQSHKQSLSSCVVDS 736


>gi|168019895|ref|XP_001762479.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162686212|gb|EDQ72602.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1780

 Score = 41.2 bits (95), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW----DLEEHQQMIERIGVTRQRQAGFKR 163
            KI L      S G G+NL  G + ++F+   W    DL+  Q    RIG TR+       
Sbjct: 1113 KIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDLQA-QDRCHRIGQTRE------- 1163

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1164 -VHIYRLISESTIEENILKKANQKRILDDLVIQS 1196


>gi|156838524|ref|XP_001642966.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113549|gb|EDO15108.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%)

Query: 44  EEKHWKEVHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQK-------AFPQ-- 90
           + K+ +EV   K+K L    + I + +N   +++  ++   L  ++K       +F +  
Sbjct: 45  DSKYNREVDSGKLKVLSELLKSITQISNKEKVVIVSNYTQTLDIIEKMLHSLSLSFTRLD 104

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFA---HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G T ++   +I      + P +FA      S G GLNL  G + L+ F   W+     Q 
Sbjct: 105 GSTPNRQRDSIVSL-FNRSPHVFAFLLSAKSGGVGLNL-IGASRLILFDNDWNPAIDLQA 162

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           + RI      + G KR  F+Y L+    IDE +LQR
Sbjct: 163 MSRI-----HRDGQKRPCFIYRLVTTGCIDEKILQR 193


>gi|281208073|gb|EFA82251.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 2100

 Score = 40.8 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +CG G+NL     ++ F S W    + Q M       R  + G  + V VY LI + T++
Sbjct: 1849 ACGIGINLTSADTVIFFDSDWNPTMDEQAM------DRCHRLGQLKPVTVYRLITKGTVE 1902

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E V++R + K  IQ +++   K E
Sbjct: 1903 EKVIKRAKQKHQIQSIVIAGGKFE 1926


>gi|260221226|emb|CBA29577.1| hypothetical protein Csp_A12850 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 784

 Score = 40.8 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q +   ++P+L     + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 647 VQRFQNQEVPVLLVSLKTGGVGLNLT-AADTVIHMDPWWN-----PAVEEQATARAHRIG 700

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + VFVY L+ + +I+E +L+    K  + D +L
Sbjct: 701 QDQPVFVYKLVVEGSIEERMLELQARKLALSDSVL 735


>gi|251778792|ref|ZP_04821712.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
 gi|243083107|gb|EES48997.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
          Length = 1086

 Score = 40.8 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 975  VDDFNEGENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1029 QENTVEVIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|170087336|ref|XP_001874891.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
 gi|164650091|gb|EDR14332.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
          Length = 816

 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +GK  +      + G G+NL  G N L+ F   W+    QQ + R+      + G K+  
Sbjct: 641 DGKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKEC 694

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           FVY  I+  TI+E + QR   K  +   +++
Sbjct: 695 FVYRFISTGTIEEKIFQRQANKQALSSAVVD 725


>gi|321262603|ref|XP_003196020.1| ATPase; Ino80p [Cryptococcus gattii WM276]
 gi|317462495|gb|ADV24233.1| ATPase, putative; Ino80p [Cryptococcus gattii WM276]
          Length = 1813

 Score = 40.8 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+     Q ++R       + G  + V VY L+A+ TI+E 
Sbjct: 1580 GLGINLT-AADTVIFYDHDWNPSSDAQAMDR-----AHRVGQTKQVTVYRLVARGTIEER 1633

Query: 180  VLQRLRTKSTIQDLLL 195
            +LQ  R K  +QD+++
Sbjct: 1634 ILQMARGKKDVQDVVV 1649


>gi|229102446|ref|ZP_04233153.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
 gi|228680931|gb|EEL35101.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V V  L+A  TI+E + +   TK  +
Sbjct: 1016 TVQVIKLVAHGTIEEKMHELQETKKNL 1042


>gi|229074784|ref|ZP_04207799.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
 gi|228708296|gb|EEL60454.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V V  L+A  TI+E + +   TK  +
Sbjct: 1016 TVQVIKLVAHGTIEEKMHELQETKKNL 1042


>gi|226360588|ref|YP_002778366.1| helicase [Rhodococcus opacus B4]
 gi|226239073|dbj|BAH49421.1| putative helicase [Rhodococcus opacus B4]
          Length = 934

 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +  G +P+L     + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 815 VERFQSGDVPVLILSLKAAGTGLNLTRADHV-VHFDRWWN-----PAVEDQATDRAYRIG 868

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               V V+ L+   TI+E +   L +K  + D +L+
Sbjct: 869 QTHPVVVHRLVTAGTIEEHIAAMLASKRQLADSVLS 904


>gi|259146092|emb|CAY79352.1| Chd1p [Saccharomyces cerevisiae EC1118]
 gi|323348857|gb|EGA83095.1| Chd1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1468

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 826

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 827 EEVLERARKKMILE 840


>gi|256271313|gb|EEU06383.1| Chd1p [Saccharomyces cerevisiae JAY291]
          Length = 1468

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 826

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 827 EEVLERARKKMILE 840


>gi|19115879|ref|NP_594967.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe 972h-]
 gi|15214050|sp|O14139|HRP3_SCHPO RecName: Full=Chromodomain helicase hrp3; AltName:
           Full=ATP-dependent helicase hrp3
 gi|2408073|emb|CAB16277.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe]
          Length = 1388

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N    P  +      + G G+NL     +++F S W    + Q M       R 
Sbjct: 747 TSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAM------ARA 800

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + G K  V VY L++++TI+E VL+R R K  ++
Sbjct: 801 HRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILE 835


>gi|151944881|gb|EDN63140.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
           YJM789]
          Length = 1468

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 826

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 827 EEVLERARKKMILE 840


>gi|67594179|ref|XP_665781.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis TU502]
 gi|54656607|gb|EAL35548.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFS 136
           N D+  L  + P    L      ++ +N+ +   LF   +  G  GLN+  G N ++ + 
Sbjct: 405 NKDVLTLDGSTP----LSTRFSLVKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYD 459

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            WW+     Q  ER       + G K+ V VY LI ++TI+E + QR
Sbjct: 460 PWWNPMTDVQAKERCW-----RIGQKKEVIVYRLITRDTIEEKIFQR 501


>gi|291441044|ref|ZP_06580434.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343939|gb|EFE70895.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 619

 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 505 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 558

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ +IA+ T+++ + + L  K  + D +L +
Sbjct: 559 QTRPVQVHRIIAEGTVEDRIAELLVRKRELADAVLGS 595


>gi|239932688|ref|ZP_04689641.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 624

 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 510 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 563

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ +IA+ T+++ + + L  K  + D +L +
Sbjct: 564 QTRPVQVHRIIAEGTVEDRIAELLVRKRELADAVLGS 600


>gi|229096334|ref|ZP_04227307.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
 gi|228687294|gb|EEL41199.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V V  L+A  TI+E + +   TK  +
Sbjct: 1016 TVQVIKLVAHGTIEEKMHELQETKKNL 1042


>gi|195550742|ref|XP_002076092.1| GD12001 [Drosophila simulans]
 gi|194201741|gb|EDX15317.1| GD12001 [Drosophila simulans]
          Length = 783

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 579 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 632

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 633 ILQRQTHKKSLSSTIID 649


>gi|195116621|ref|XP_002002852.1| GI10760 [Drosophila mojavensis]
 gi|292630864|sp|B4KHL5|RAD54_DROMO RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193913427|gb|EDW12294.1| GI10760 [Drosophila mojavensis]
          Length = 783

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 574 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 627

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 628 ILQRQTHKKSLSSTIID 644


>gi|229115289|ref|ZP_04244698.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
 gi|228668121|gb|EEL23554.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V V  L+A  TI+E + +   TK  +
Sbjct: 1016 TVQVIKLVAHGTIEEKMHELQETKKNL 1042


>gi|6321012|ref|NP_011091.1| Chd1p [Saccharomyces cerevisiae S288c]
 gi|418395|sp|P32657|CHD1_YEAST RecName: Full=Chromo domain-containing protein 1; AltName:
           Full=ATP-dependent helicase CHD1
 gi|603404|gb|AAB64691.1| Chd1p: transcriptional regulator [Saccharomyces cerevisiae]
 gi|285811798|tpg|DAA07826.1| TPA: Chd1p [Saccharomyces cerevisiae S288c]
          Length = 1468

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 826

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 827 EEVLERARKKMILE 840


>gi|115891453|ref|XP_781410.2| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
 gi|115930718|ref|XP_001181304.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
          Length = 1335

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL     +++F S W    + Q M       R  + G +R V +Y L+ ++TI+E 
Sbjct: 872 GLGLNLASADTVIIFDSDWNPQNDIQAM------ARAHRIGQRRQVNIYRLVTKDTIEEE 925

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 926 IIERAKRKMVLDHLVIQRM 944


>gi|328861412|gb|EGG10515.1| hypothetical protein MELLADRAFT_47048 [Melampsora larici-populina
           98AG31]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 18/145 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTL--DKDPCTIQ 102
           EK+K L VI  K+  + I++   F   LA L+K             G T   D+ P   +
Sbjct: 482 EKLKEL-VIRLKSKGSRILIFSQFTQMLAILEKVMECIGVKFLILTGSTSVGDRQPLVDE 540

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I +      + G GLNL     +++F     D   H    +R    R  + G K
Sbjct: 541 FTNDESITVFLLSTKAGGLGLNLMAADTVVIF---DQDFNPHN---DRQAEDRAYRLGQK 594

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
           R V V   + ++TI+E +LQ  +TK
Sbjct: 595 RDVHVIKFVTKHTIEEDILQLAQTK 619


>gi|313898599|ref|ZP_07832134.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956483|gb|EFR38116.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 1077

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N    P+      + G GLNL     +++ F  WW++    Q        R  + G
Sbjct: 970  VNSFNSDDTPIFLISLKAGGTGLNLT-SAEVVIHFDPWWNVSAQNQ-----ATDRAYRIG 1023

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                V V  LIA++TI+E ++Q    K  + D ++
Sbjct: 1024 QHNNVQVVKLIAKDTIEEKIMQLQSLKQDLSDSII 1058


>gi|237836947|ref|XP_002367771.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965435|gb|EEB00631.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221482002|gb|EEE20368.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
 gi|221505079|gb|EEE30733.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii VEG]
          Length = 693

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 26/193 (13%)

Query: 18  ENIEAFNSASKTVKC-LQLANGAVY-YDEEKHWKEVHD----EKIKALE---VIIEKANA 68
           E +++F    KTV   L L+N   + YD    +    D     K++ LE   + I  ++ 
Sbjct: 479 EVLKSFVPPKKTVAIYLNLSNQQRFAYDTVCKFTLTRDVRMHTKLQFLENLLLSIRSSSN 538

Query: 69  APIIVAYHFNSDLARLQ-----KAFP----QGRTLDKDPCT-IQEWNEGKIPLLFAHPAS 118
             I++  +F S L  ++     K +      G T  KD    ++ +NE K    F   + 
Sbjct: 539 DKIVIVSNFTSTLDNIEIFMQAKGYSFLRLDGSTAVKDRTGLVKTFNESKECFAFLLSSK 598

Query: 119 CGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G  GLNL  G N LV     W+    QQ + R+      + G    V++Y L+   TI+
Sbjct: 599 AGGVGLNL-IGANRLVLLDPDWNPANDQQALARVW-----RPGQINPVYIYRLVGARTIE 652

Query: 178 ELVLQRLRTKSTI 190
           E +LQR   K+T+
Sbjct: 653 EKILQRQAYKATL 665


>gi|198473012|ref|XP_001356143.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
 gi|292630937|sp|Q29KH2|RAD54_DROPS RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|198139260|gb|EAL33203.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
          Length = 782

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 578 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 631

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 632 ILQRQTHKKSLSSTIID 648


>gi|190405721|gb|EDV08988.1| chromo domain protein 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 1436

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 741 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 794

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 795 EEVLERARKKMILE 808


>gi|296163436|ref|ZP_06846189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295886324|gb|EFG66189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1117

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    I+ + +  +PL      + G GLNL    + ++ +  WW+       +E 
Sbjct: 978  GDTTDRR-TPIRRFQQRAVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWN-----PAVEN 1030

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  + VFVY LI   +++E ++     K+ + D +L+
Sbjct: 1031 QATDRAHRLGQDKPVFVYKLITAGSVEEKIVAMQEQKAALADAILS 1076


>gi|229166704|ref|ZP_04294454.1| Helicase, SWF/SNF [Bacillus cereus AH621]
 gi|228616701|gb|EEK73776.1| Helicase, SWF/SNF [Bacillus cereus AH621]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|145338703|ref|NP_188552.3| ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|112419506|dbj|BAF03042.1| Rad54 [Arabidopsis thaliana]
 gi|116518260|gb|ABJ99465.1| RAD54-like protein [Arabidopsis thaliana]
          Length = 910

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q   R+      + G K+ V+VY  ++  TI+E 
Sbjct: 615 GCGLNL-IGANRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYVYRFLSTGTIEEK 668

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 669 VYQRQMSKEGLQKVI 683


>gi|229011148|ref|ZP_04168341.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
 gi|228750031|gb|EEL99863.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|41055574|ref|NP_957438.1| DNA repair and recombination protein RAD54-like [Danio rerio]
 gi|28277973|gb|AAH46050.1| RAD54-like (S. cerevisiae) [Danio rerio]
          Length = 738

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 571 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 624

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K  +   +++
Sbjct: 625 ILQRQAHKKALSSCVVD 641


>gi|302561960|ref|ZP_07314302.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302479578|gb|EFL42671.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 538 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 591

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ +IA+ T+++ +   L  K  + D +L +
Sbjct: 592 QTRPVQVHRIIAEGTVEDRIAALLERKRELADAVLGS 628


>gi|17136368|ref|NP_476661.1| okra [Drosophila melanogaster]
 gi|74960637|sp|O76460|RAD54_DROME RecName: Full=DNA repair and recombination protein RAD54-like;
           Short=DmRAD54; AltName: Full=Protein okra; AltName:
           Full=RAD54 DNA repair protein
 gi|3264618|gb|AAC24577.1| Rad54 homolog OKR [Drosophila melanogaster]
 gi|7295868|gb|AAF51168.1| okra [Drosophila melanogaster]
 gi|220947310|gb|ACL86198.1| okr-PA [synthetic construct]
 gi|220956782|gb|ACL90934.1| okr-PA [synthetic construct]
          Length = 784

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 580 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 633

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 634 ILQRQTHKKSLSSTIID 650


>gi|182419549|ref|ZP_02950797.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237667122|ref|ZP_04527106.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182376584|gb|EDT74159.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237655470|gb|EEP53026.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1060

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+N  K   +F     + G GLNL    N+++ F  WW+       IE     R  + 
Sbjct: 948  VEEFNNDKNKRVFLISLKAGGTGLNLT-SANMVIHFDPWWN-----PSIEDQATDRAHRI 1001

Query: 160  GFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNALKKETI 203
            G KR V V  LIA+ TI+E +VL +   ++ I D+L N L    +
Sbjct: 1002 GQKRDVEVIKLIAKGTIEEKIVLLQEDKRNLINDVLTNELNDSEV 1046


>gi|146308259|ref|YP_001188724.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
 gi|145576460|gb|ABP85992.1| Non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
          Length = 876

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+    ++ +  G+ P+      + G GLNL    + ++ F  WW+     Q  +R
Sbjct: 756 GSTQDRR-TPVERFQAGEFPVFLISLKAGGSGLNL-TAADTVIHFDPWWNPAAEAQASDR 813

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G  + VFVY LI + +++E + Q  + K+++
Sbjct: 814 A-----YRIGQDKPVFVYKLITRGSVEEKIQQLQQAKASL 848


>gi|319650819|ref|ZP_08004956.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
 gi|317397417|gb|EFV78118.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
          Length = 939

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE  N    ++   F  D+  L  + P+    ++D   I  + + + P+      + G G
Sbjct: 796 IEMGNMIARLLKKQFGFDVPFLNGSVPKQ---ERD-NMISRFQDHEFPVFLLSLKAGGTG 851

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ +IA  T++E +  
Sbjct: 852 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKMIATGTLEEKIDA 905

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ D ++ +
Sbjct: 906 MLEKKQSLNDQIITS 920


>gi|229017133|ref|ZP_04174048.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
 gi|229023310|ref|ZP_04179819.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228738015|gb|EEL88502.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228744153|gb|EEL94240.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|1765914|emb|CAA71278.1| RAD54 [Drosophila melanogaster]
          Length = 784

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 580 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 633

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 634 ILQRQTHKKSLSSTIID 650


>gi|323337858|gb|EGA79098.1| Chd1p [Saccharomyces cerevisiae Vin13]
          Length = 1329

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 826

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 827 EEVLERARKKMILE 840


>gi|297833338|ref|XP_002884551.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330391|gb|EFH60810.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1130

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    ++++NE   P  +      + G GLNLQ    +++F S W     + QM ++  
Sbjct: 795 DQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQMDQQ-A 848

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 849 EDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 893


>gi|262374572|ref|ZP_06067846.1| predicted protein [Acinetobacter junii SH205]
 gi|262310568|gb|EEY91658.1| predicted protein [Acinetobacter junii SH205]
          Length = 1115

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T  +D   I  +  G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 996  GKTKKRDEV-ITAFQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDR 1053

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFVY LI   +I+E +L   + K+ +   +L+ 
Sbjct: 1054 AW-----RIGQDKPVFVYKLITNKSIEEKILALQQNKAELAQSILST 1095


>gi|229029537|ref|ZP_04185617.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
 gi|228731736|gb|EEL82638.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|194855241|ref|XP_001968502.1| GG24469 [Drosophila erecta]
 gi|292630862|sp|B3NAN8|RAD54_DROER RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190660369|gb|EDV57561.1| GG24469 [Drosophila erecta]
          Length = 784

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 580 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 633

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 634 ILQRQTHKKSLSSTIID 650


>gi|66356826|ref|XP_625591.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
 gi|46226589|gb|EAK87577.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
          Length = 1181

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++ +N+ +   LF   +  G  GLN+  G N ++ +  WW+     Q  ER       + 
Sbjct: 783 VKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYDPWWNPMTDVQAKERCW-----RI 836

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G K+ V VY LI ++TI+E + QR   K  I   +L   K ++
Sbjct: 837 GQKKEVIVYRLITRDTIEEKIFQRQLFKEFIAKQILKDPKSQS 879


>gi|328861599|gb|EGG10702.1| hypothetical protein MELLADRAFT_22404 [Melampsora larici-populina
           98AG31]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S W    + Q M       R  + G K  V VY L+ ++T++
Sbjct: 545 AGGLGINLETADTVIIFDSDWNPQNDLQAM------ARAHRIGQKNHVNVYRLVTKDTVE 598

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E VL+R + K  ++  ++N +
Sbjct: 599 EDVLERAKRKMILEYAIINQM 619


>gi|297834836|ref|XP_002885300.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331140|gb|EFH61559.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 910

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q   R+      + G K+ V+VY  ++  TI+E 
Sbjct: 615 GCGLNL-IGANRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYVYRFLSTGTIEEK 668

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 669 VYQRQMSKEGLQKVI 683


>gi|294055867|ref|YP_003549525.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615200|gb|ADE55355.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 843

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQ-------GRTLDKD-PCTIQEWNE 106
           LE  +E A A  +++   F   L RL+      FP+       G+T D+  P    +  +
Sbjct: 676 LEEALEGAGARKVVIFSQFVQLLTRLKPEIKAKFPKVALLELTGQTRDRSKPVETFQNKD 735

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   +L +  A  G G+ L +  + +     WW+     Q ++R+      + G ++ VF
Sbjct: 736 GPAVILVSLRAG-GTGITL-HAADYVFLLDPWWNPAVENQAVDRV-----HRIGQQKRVF 788

Query: 167 VYYLIAQNTIDELVLQRLRTKSTI 190
           VY +I Q TI+E +    R K  +
Sbjct: 789 VYRMITQGTIEERIQHLKREKREL 812


>gi|291239296|ref|XP_002739559.1| PREDICTED: Lodestar protein-like [Saccoglossus kowalevskii]
          Length = 1134

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L    + W+    QQ  +RI      + G ++ VF++  + +NT++E 
Sbjct: 1044 GVGLNL-IGGNHLFLLDMHWNPALEQQACDRI-----YRVGQEKEVFIHKFVCKNTVEEK 1097

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +L+  + K+ +   +L+ 
Sbjct: 1098 ILELQKKKTNLATNVLSG 1115


>gi|89902690|ref|YP_525161.1| SNF2-like protein [Rhodoferax ferrireducens T118]
 gi|89347427|gb|ABD71630.1| SNF2-related [Rhodoferax ferrireducens T118]
          Length = 1178

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G++  +D   I+++  G +PL      + G GLNL    + ++ +  WW+       +E 
Sbjct: 1056 GQSQKRD-ALIEQFTSGAVPLFLISLKAGGVGLNLPQA-DTVIHYDPWWN-----PAVEN 1108

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                R  + G  ++V+V  L+AQ TI+E +L     K+ + +
Sbjct: 1109 QATDRAHRIGQTQSVWVVKLVAQGTIEERILGLQERKAALAE 1150


>gi|301053386|ref|YP_003791597.1| helicase, SWF/SNF family [Bacillus anthracis CI]
 gi|300375555|gb|ADK04459.1| helicase, SWF/SNF family [Bacillus cereus biovar anthracis str. CI]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|27819922|gb|AAL39744.2| LD35220p [Drosophila melanogaster]
          Length = 788

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 584 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 637

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 638 ILQRQTHKKSLSSTIID 654


>gi|326779993|ref|ZP_08239258.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660326|gb|EGE45172.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1001

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +   ++P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 888 VDRFQSAEVPVFLLSLKAAGTGLNLTRAAHV-VHFDRWWN-----PAVEEQATDRAYRIG 941

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +IA+ T+++ + + L +K  + D +L +
Sbjct: 942 QTQPVQVHRIIAEGTVEDRIAELLESKRVLADAVLGS 978


>gi|225863710|ref|YP_002749088.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786052|gb|ACO26269.1| putative helicase [Bacillus cereus 03BB102]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|182439336|ref|YP_001827055.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467852|dbj|BAG22372.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1004

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +   ++P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 891 VDRFQSAEVPVFLLSLKAAGTGLNLTRAAHV-VHFDRWWN-----PAVEEQATDRAYRIG 944

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +IA+ T+++ + + L +K  + D +L +
Sbjct: 945 QTQPVQVHRIIAEGTVEDRIAELLESKRVLADAVLGS 981


>gi|229172496|ref|ZP_04300055.1| Helicase, SWF/SNF [Bacillus cereus MM3]
 gi|228610967|gb|EEK68230.1| Helicase, SWF/SNF [Bacillus cereus MM3]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|167521471|ref|XP_001745074.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776688|gb|EDQ90307.1| predicted protein [Monosiga brevicollis MX1]
          Length = 827

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLN+  G + LV F   W+     Q + RI      + G  R VF+Y L+A  TI+E 
Sbjct: 634 GVGLNI-VGASRLVLFDTDWNPSHDLQAMARIW-----REGQTRPVFIYRLVATGTIEEK 687

Query: 180 VLQRLRTKSTI 190
           + QR   KS +
Sbjct: 688 IYQRQIVKSAL 698


>gi|228984941|ref|ZP_04145110.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
 gi|228774764|gb|EEM23161.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|218902968|ref|YP_002450802.1| putative helicase [Bacillus cereus AH820]
 gi|228930936|ref|ZP_04093897.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
 gi|229121402|ref|ZP_04250630.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|218535984|gb|ACK88382.1| putative helicase [Bacillus cereus AH820]
 gi|228662045|gb|EEL17657.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|228828715|gb|EEM74390.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|217959332|ref|YP_002337880.1| putative helicase [Bacillus cereus AH187]
 gi|229138547|ref|ZP_04267132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
 gi|217067719|gb|ACJ81969.1| putative helicase [Bacillus cereus AH187]
 gi|228644907|gb|EEL01154.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|325116690|emb|CBZ52243.1| hypothetical protein NCLIV_020290 [Neospora caninum Liverpool]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+     W+    QQ + RI      + G    VF+Y L+   TI+E 
Sbjct: 601 GVGLNL-IGANRLILLDPDWNPANDQQALARI-----WRPGQVNPVFIYRLVGARTIEEK 654

Query: 180 VLQRLRTKSTI 190
           +LQR   K+T+
Sbjct: 655 ILQRQAYKTTL 665


>gi|237756840|ref|ZP_04585323.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691004|gb|EEP60129.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 22/138 (15%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D+ IK L+ I++       IV+YH    L   +K     + ++ + C +           
Sbjct: 237 DKIIKNLKTILQPQQ----IVSYH--GSLKPEEKNLAVKKFVEDEKCLV----------F 280

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    + ++FF L W+  +  Q  +R+      + G K  V +Y  I 
Sbjct: 281 VGTINAAGEGLTLT-SSSYVIFFDLHWNPAKMWQAEDRV-----HRIGQKNKVNIYTFIT 334

Query: 173 QNTIDELVLQRLRTKSTI 190
           QNT++E +LQ+L  K ++
Sbjct: 335 QNTVEEKILQKLEEKRSM 352


>gi|228933137|ref|ZP_04095994.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
 gi|228826494|gb|EEM72270.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|228952232|ref|ZP_04114322.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
 gi|228807447|gb|EEM53976.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|229090820|ref|ZP_04222049.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
 gi|228692523|gb|EEL46253.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|196045190|ref|ZP_03112423.1| putative helicase [Bacillus cereus 03BB108]
 gi|229184042|ref|ZP_04311255.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
 gi|196024192|gb|EDX62866.1| putative helicase [Bacillus cereus 03BB108]
 gi|228599425|gb|EEK57032.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|206975015|ref|ZP_03235930.1| putative helicase [Bacillus cereus H3081.97]
 gi|206747034|gb|EDZ58426.1| putative helicase [Bacillus cereus H3081.97]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|118477275|ref|YP_894426.1| SWF/SNF family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|118416500|gb|ABK84919.1| helicase, SWF/SNF family [Bacillus thuringiensis str. Al Hakam]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|30261851|ref|NP_844228.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47527092|ref|YP_018441.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184685|ref|YP_027937.1| helicase [Bacillus anthracis str. Sterne]
 gi|165869343|ref|ZP_02214002.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167633415|ref|ZP_02391740.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167638796|ref|ZP_02397071.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170686032|ref|ZP_02877254.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170707256|ref|ZP_02897711.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177650600|ref|ZP_02933567.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190566481|ref|ZP_03019399.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227815374|ref|YP_002815383.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229599991|ref|YP_002866233.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254683351|ref|ZP_05147212.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254734706|ref|ZP_05192418.1| putative helicase [Bacillus anthracis str. Western North America
            USA6153]
 gi|254741114|ref|ZP_05198802.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755357|ref|ZP_05207391.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759895|ref|ZP_05211919.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30256079|gb|AAP25714.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47502240|gb|AAT30916.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178612|gb|AAT53988.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714783|gb|EDR20301.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167513260|gb|EDR88631.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167531453|gb|EDR94131.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170127755|gb|EDS96627.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170669729|gb|EDT20470.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172083744|gb|EDT68804.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190562616|gb|EDV16583.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003172|gb|ACP12915.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229264399|gb|ACQ46036.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|296502447|ref|YP_003664147.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296323499|gb|ADH06427.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|228945457|ref|ZP_04107809.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
 gi|228814210|gb|EEM60479.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|196041238|ref|ZP_03108533.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196027946|gb|EDX66558.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|121712768|ref|XP_001273995.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119402148|gb|EAW12569.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 953

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D  T +  N+    +L A  + C  GLNL    N  +    WW      Q ++R+    
Sbjct: 838 RDSSTYKFSNDPGCKVLLASLSVCSVGLNL-VAANQAILADSWWAPTIEDQAVDRV---- 892

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G KR   V+ L+ +NTI++ VL+    + T + L+L A ++ +  V
Sbjct: 893 -YRLGQKRETTVWRLVMENTIEDRVLE---IQDTKRKLMLAAFRETSKKV 938


>gi|49481102|ref|YP_035985.1| SWF/SNF family helicase [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49332658|gb|AAT63304.1| helicase, SWF/SNF family [Bacillus thuringiensis serovar konkukian
            str. 97-27]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|163939654|ref|YP_001644538.1| non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
 gi|163861851|gb|ABY42910.1| Non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1016 TVQVIKLVAHGTIEE 1030


>gi|324325873|gb|ADY21133.1| helicase, putative [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|254723933|ref|ZP_05185719.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|229132678|ref|ZP_04261525.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
 gi|228650805|gb|EEL06793.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1016 TVQVIKLVAHGTIEE 1030


>gi|229155427|ref|ZP_04283536.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
 gi|228627988|gb|EEK84706.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|327481349|gb|AEA84659.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri DSM
           4166]
          Length = 773

 Score = 40.8 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +++   F S LA +++A  +         G T D+    ++ +  G++PL      + G 
Sbjct: 624 VLLFSQFTSMLALIEQALLKRGITYVKLTGETDDRR-TPVERFQAGEVPLFLISLKAGGT 682

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNL    + ++ +  WW+     Q  +     R  + G  + VFVY LI + T++E +
Sbjct: 683 GLNLT-AADTVIHYDPWWNPAAENQATD-----RAYRIGQDKPVFVYRLITRGTVEERI 735


>gi|229079035|ref|ZP_04211586.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
 gi|228704209|gb|EEL56644.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|196033339|ref|ZP_03100751.1| putative helicase [Bacillus cereus W]
 gi|195993773|gb|EDX57729.1| putative helicase [Bacillus cereus W]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|146282998|ref|YP_001173151.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145571203|gb|ABP80309.1| helicase/SNF2 family domain protein [Pseudomonas stutzeri A1501]
          Length = 773

 Score = 40.8 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +++   F S LA +++A  +         G T D+    ++ +  G++PL      + G 
Sbjct: 624 VLLFSQFTSMLALIEQALLKRGITYVKLTGETDDRR-TPVERFQAGEVPLFLISLKAGGT 682

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNL    + ++ +  WW+     Q  +     R  + G  + VFVY LI + T++E +
Sbjct: 683 GLNLT-AADTVIHYDPWWNPAAENQATD-----RAYRIGQDKPVFVYRLITRGTVEERI 735


>gi|322806869|emb|CBZ04439.1| hypothetical protein H04402_02632 [Clostridium botulinum H04402
           065]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 33/206 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINNTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDL-------ARLQK--AFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +E +    +I+ Y+F  ++        RL+K  +   G+T D     ++ +      ++
Sbjct: 230 SLE-STEDRVIIFYNFTEEMKQIKEVCGRLEKPVSIVNGQTKD-----LENYKTKDNAVV 283

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   GLNLQ   N +V++SL    E  +Q        R  + G  R    +YLI 
Sbjct: 284 LVQYQAGAMGLNLQLS-NKIVYYSLPLASELFEQ-----SKKRTHRIGQTRTCMYWYLIT 337

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+I+E + + L+ +    D L   L
Sbjct: 338 KNSIEEQIFETLKERKDFTDKLFEEL 363


>gi|229059502|ref|ZP_04196884.1| Helicase, SWF/SNF [Bacillus cereus AH603]
 gi|228719785|gb|EEL71379.1| Helicase, SWF/SNF [Bacillus cereus AH603]
          Length = 1068

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1016 TVQVIKLVAHGTIEE 1030


>gi|229189952|ref|ZP_04316960.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
 gi|228593444|gb|EEK51255.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|229196057|ref|ZP_04322809.1| Helicase, SWF/SNF [Bacillus cereus m1293]
 gi|228587439|gb|EEK45505.1| Helicase, SWF/SNF [Bacillus cereus m1293]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|222095476|ref|YP_002529536.1| helicase, putative [Bacillus cereus Q1]
 gi|221239534|gb|ACM12244.1| helicase, putative [Bacillus cereus Q1]
          Length = 1064

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|195161916|ref|XP_002021802.1| GL26701 [Drosophila persimilis]
 gi|292630865|sp|B4GS98|RAD54_DROPE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194103602|gb|EDW25645.1| GL26701 [Drosophila persimilis]
          Length = 782

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 578 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 631

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 632 ILQRQTHKKSLSSTIID 648


>gi|47575794|ref|NP_001001241.1| RAD54-like [Xenopus (Silurana) tropicalis]
 gi|45708870|gb|AAH67986.1| RAD54-like (S. cerevisiae) [Xenopus (Silurana) tropicalis]
          Length = 742

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L++  TI+E 
Sbjct: 575 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCFIYRLLSTGTIEEK 628

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 629 IFQRQTHKKALSSCVVD 645


>gi|228958135|ref|ZP_04119868.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
 gi|228801518|gb|EEM48402.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
          Length = 1064

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|195031155|ref|XP_001988299.1| GH10642 [Drosophila grimshawi]
 gi|292630863|sp|B4JCS7|RAD54_DROGR RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193904299|gb|EDW03166.1| GH10642 [Drosophila grimshawi]
          Length = 786

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 574 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 627

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 628 ILQRQTHKKSLSSTIID 644


>gi|206970802|ref|ZP_03231754.1| putative helicase [Bacillus cereus AH1134]
 gi|206734438|gb|EDZ51608.1| putative helicase [Bacillus cereus AH1134]
          Length = 1064

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|30019888|ref|NP_831519.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|229127175|ref|ZP_04256172.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
 gi|29895433|gb|AAP08720.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|228656291|gb|EEL12132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
          Length = 1064

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|237737828|ref|ZP_04568309.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229419708|gb|EEO34755.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 913

 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL     I ++   WW+     + +E   + R  + G  R VF Y LI ++TI+E 
Sbjct: 823 GVGLNLTAADTIFIY-DPWWN-----KTVENQAIDRAYRLGQDRTVFSYKLILKDTIEEK 876

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQ   +K  + D L++
Sbjct: 877 ILQLQESKIKLLDSLIS 893


>gi|229160810|ref|ZP_04288801.1| Helicase, SWF/SNF [Bacillus cereus R309803]
 gi|228622658|gb|EEK79493.1| Helicase, SWF/SNF [Bacillus cereus R309803]
          Length = 1068

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 962  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1015

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1016 TVQVIKLVAHGTIEE 1030


>gi|224139776|ref|XP_002323271.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867901|gb|EEF05032.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1540

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++ + S W    + Q M       R  + G  + V VY LI + T++E 
Sbjct: 1296 GLGINLTAADTVIFYESDWNPTLDLQAM------DRAHRLGQTKDVTVYRLICKETVEEK 1349

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +LQR   K+T+Q L++  
Sbjct: 1350 ILQRASQKNTVQQLVMTG 1367


>gi|195435389|ref|XP_002065674.1| GK15573 [Drosophila willistoni]
 gi|292630875|sp|B4MX21|RAD54_DROWI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194161759|gb|EDW76660.1| GK15573 [Drosophila willistoni]
          Length = 784

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 578 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 631

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 632 ILQRQTHKKSLSSTIID 648


>gi|145349626|ref|XP_001419229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579460|gb|ABO97522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 983

 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  GGN LV F   W+    +Q        R  + G K+  ++Y  +A  TI+E 
Sbjct: 614 GCGINL-IGGNRLVLFDPDWNPANDKQ-----AAARCWRDGQKKKCYLYRFLAAGTIEEK 667

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K ++Q+++
Sbjct: 668 VFQRQLSKESLQNVV 682


>gi|303279422|ref|XP_003059004.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460164|gb|EEH57459.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1131

 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 25/162 (15%)

Query: 50  EVHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARL---QKAFPQ-----GRTLDK 96
           E H  K   L  ++     E  +   II  Y    DL +    Q  +P      G ++ K
Sbjct: 531 EFHSGKFAVLARLLAILRAETKDRIVIISNYTQTLDLVQFLCKQNNYPHCRLDGGTSITK 590

Query: 97  DPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++++N+      + LL +    CG  +NL  GGN LV F   W+    +Q      
Sbjct: 591 RQKLVRQFNDPTENCFVFLLSSKAGGCG--INL-IGGNRLVLFDPDWNPANDKQ-----A 642

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G K+  ++Y L A  +I+E V QR  +K ++Q+++
Sbjct: 643 AARCWRDGQKKKCYLYRLFATGSIEEKVFQRQLSKESLQNVV 684


>gi|229542960|ref|ZP_04432020.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
 gi|229327380|gb|EEN93055.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
          Length = 1081

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G + +V + LWW+       +E     R  + G K 
Sbjct: 975  FNSGEKNVFLISLKAGGTGLNLT-GADTVVLYDLWWN-----PAVEEQAAGRAHRIGQKN 1028

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI-------QDLLLNALKKETI 203
             V V  LIA+ TI+E + +  + K  +        + +LN+L +E I
Sbjct: 1029 VVQVIRLIARGTIEEKIYELQQKKKELIEKVIQPGETMLNSLNEEEI 1075


>gi|119194699|ref|XP_001247953.1| hypothetical protein CIMG_01724 [Coccidioides immitis RS]
          Length = 846

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 618 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 671

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   ++++
Sbjct: 672 IFQRQSHKQLLSSCVVDS 689


>gi|52143616|ref|YP_083212.1| SWF/SNF family helicase [Bacillus cereus E33L]
 gi|51977085|gb|AAU18635.1| helicase, SWF/SNF family [Bacillus cereus E33L]
          Length = 1064

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|255941182|ref|XP_002561360.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585983|emb|CAP93720.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2162

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH---QQMIERIGVTRQ 156
            TIQ  +  K  L+     S   GLNLQ   N ++F S ++    H     M + IG  R 
Sbjct: 2045 TIQPPSRPKA-LILNLGTSMAAGLNLQCA-NHVIFLSPYFTTSHHDYDSGMTQAIG--RA 2100

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            R+ G +R V+VY+L+ +NT D  + Q+ ++   ++
Sbjct: 2101 RRFGQEREVYVYHLLVKNTYDVNIFQKAQSSKLVE 2135


>gi|193084005|gb|ACF09679.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-202-A2]
          Length = 569

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T       I  + +G   L+ A   +   G+NL      ++F  L W    H+Q  +R
Sbjct: 444 GQTDKVRQLNIDRFQDGDTKLMIAGLRAGNLGINLTRA-KYVIFGELDWSPAIHRQAEDR 502

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +      + G K  VF YYLI   T+DE V   L  KS   D +++ +++
Sbjct: 503 L-----HRIGQKNTVFAYYLIGNGTLDEHVANILVDKSYEIDTIMDEVRE 547


>gi|115654057|ref|XP_001202164.1| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
 gi|115679178|ref|XP_790055.2| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  TI+E 
Sbjct: 168 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKRCFIYRLLATGTIEEK 221

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 222 IFQRQAHKKALSSCVVD 238


>gi|9294624|dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thaliana]
          Length = 959

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q   R+      + G K+ V+VY  ++  TI+E 
Sbjct: 615 GCGLNL-IGANRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVYVYRFLSTGTIEEK 668

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  +Q ++
Sbjct: 669 VYQRQMSKEGLQKVI 683


>gi|228990815|ref|ZP_04150780.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
 gi|228769341|gb|EEM17939.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
          Length = 1071

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 965  FNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1018

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1019 TVQVIKLVAHGTIEE 1033


>gi|124007753|ref|ZP_01692456.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
 gi|123986875|gb|EAY26647.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
          Length = 1207

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    N+ + + LWW+       +E     R  + G +  V VY +I Q T +
Sbjct: 1112 AGGTGLNLTKASNV-IHYDLWWN-----PAVENQATDRAYRIGQQNNVMVYRMITQGTFE 1165

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +   ++TK  + DL ++ 
Sbjct: 1166 EKINAMIQTKKELADLTVST 1185


>gi|328887305|emb|CCA60544.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 1036

 Score = 40.4 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +  G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 919  VARFQSGEVPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 972

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R V V+ LIA+ TI++ +   L  K  + D +L
Sbjct: 973  QDRPVQVHRLIAEGTIEDRIATMLDRKRELADTVL 1007


>gi|317126523|ref|YP_004100635.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
 gi|315590611|gb|ADU49908.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
          Length = 1043

 Score = 40.4 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F++D+A L    P+ R   +D    Q   +G  P+      + G GLNL    N ++   
Sbjct: 906  FDTDVAYLHGGTPKKR---RDELVTQFQGDGGAPIFLLSLKAGGTGLNLTA-ANHVIHLD 961

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+       +E     R  + G +R V V   +   T++E + Q +  K  + +L++
Sbjct: 962  RWWN-----PAVENQATDRAYRIGQQRRVQVRKFVCTGTLEEKIDQMIEEKLALANLVV 1015


>gi|321465306|gb|EFX76308.1| RAD54, DNA repair and recombination protein [Daphnia pulex]
          Length = 748

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L++  TI+E 
Sbjct: 582 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKPCFIYRLLSTGTIEEK 635

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 636 IFQRQAHKKALSSCVVD 652


>gi|312130874|ref|YP_003998214.1| snf2-related protein [Leadbetterella byssophila DSM 17132]
 gi|311907420|gb|ADQ17861.1| SNF2-related protein [Leadbetterella byssophila DSM 17132]
          Length = 962

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    N+ +    WW+       IE   V R  + G  + VF Y  I QNTI+
Sbjct: 871 AGGVGLNLTAAENVFLL-DPWWN-----PAIEAQAVDRAHRIGQTKTVFSYKFITQNTIE 924

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +++   TK  + D L+
Sbjct: 925 EKIVELQNTKRQLFDELI 942


>gi|162451262|ref|YP_001613629.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
 gi|161161844|emb|CAN93149.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
          Length = 1141

 Score = 40.4 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+     +  N+  +P+      + G GLNL    + ++ F  WW+    QQ  +R
Sbjct: 1021 GSTKDRAERVERFQNDPSVPVFLISLKAGGTGLNLT-AADTVIHFDPWWNPAVEQQATDR 1079

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                   + G  + V  Y LIA+ TI+E +L
Sbjct: 1080 -----AHRIGQTKVVTAYRLIAEGTIEEKIL 1105


>gi|294933433|ref|XP_002780713.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890749|gb|EER12508.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFS 136
           N  L R+    PQ     K P  ++++ E   I +      +C  GL L    +++VF  
Sbjct: 147 NFGLIRIDGQTPQ----TKRPELVKKFQEDDDIRVAVLSITACSEGLTLT-AASVVVFAE 201

Query: 137 LWW---DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           L+W    +E+ +  + RIG T       K  V ++YLIA+ + DE V   L+ K      
Sbjct: 202 LYWVPGTIEQAEARVHRIGQT-------KSCVDIHYLIARGSPDEAVYACLKRKKEDTSA 254

Query: 194 LLNA 197
           +LN 
Sbjct: 255 ILNG 258


>gi|282865750|ref|ZP_06274800.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282559394|gb|EFB64946.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 957

 Score = 40.4 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G  P+      + G GLNL   G++ V F  WW+       +E     R  + G
Sbjct: 843 VNRFQAGDAPVFLLSLKAAGTGLNLTRAGHV-VHFDRWWN-----PAVEAQATDRAYRIG 896

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + V V+ LIA+ TI++ +   L  K  + D +L
Sbjct: 897 QTQPVQVHRLIAEGTIEDRIAGMLARKQGLADAVL 931


>gi|158288154|ref|XP_310015.4| AGAP009344-PA [Anopheles gambiae str. PEST]
 gi|157019247|gb|EAA05751.4| AGAP009344-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++     W+    QQ I RI      + G KR  +VY LIA  T++E 
Sbjct: 784 GQGINLT-GANRVIILDTSWNPSNDQQNIFRIF-----RLGQKRKCYVYRLIAAGTMEEK 837

Query: 180 VLQRLRTKSTI 190
           V  R  TK  +
Sbjct: 838 VYSRSVTKQAL 848


>gi|332019859|gb|EGI60320.1| DNA repair and recombination protein RAD54B [Acromyrmex echinatior]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +  K+ LL A     G GLNL  G + LV F   W+     Q + RI      + G KR 
Sbjct: 676 DNSKVLLLSAKAG--GVGLNLP-GASRLVLFDSDWNPASDMQAMARIW-----RDGQKRN 727

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V++Y L+   TI+E + QR  +K+ + + +++
Sbjct: 728 VYIYRLLTTGTIEEKIYQRQISKANLSETVVD 759


>gi|312891015|ref|ZP_07750539.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311296482|gb|EFQ73627.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 945

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 106 EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           EG    +F      G+ GLNL    + ++ F  WW+    QQ I+R       + G  + 
Sbjct: 841 EGNTTNIFLISLMAGNMGLNLT-AADYVILFDPWWNTAVEQQAIDRT-----HRIGQTKK 894

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y +I ++TI+E ++     K ++ D L+  
Sbjct: 895 VFAYKMICRDTIEEKIINLQEKKKSLSDSLIGG 927


>gi|312196824|ref|YP_004016885.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311228160|gb|ADP81015.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 1282

 Score = 40.4 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            A ++  +  GRT D+    ++ +  GK  +      + G GLNL    +       WW+ 
Sbjct: 1156 AGVEYCYLDGRTRDRAD-VVERFRSGKASVFLISLKAGGFGLNLTEA-DYCFLLDPWWNP 1213

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                Q ++R       + G  R V VY L+A++TI+E V+
Sbjct: 1214 ATEAQAVDR-----THRIGQTRNVLVYRLVARDTIEEKVM 1248


>gi|308446187|ref|XP_003087115.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
 gi|308262104|gb|EFP06057.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T  +D   I  +  G IP+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 320 GQTKKRDEV-ITAFQAGDIPVFLISLKAGGVGLNL-TAADTVIHYDPWWNPAAEDQASDR 377

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LI   +I+E +L   + K+ +   +L+
Sbjct: 378 AW-----RIGQDKPVFVYKLITNQSIEEKILALQKNKADLAKSILS 418


>gi|258650324|ref|YP_003199480.1| SNF2-like protein [Nakamurella multipartita DSM 44233]
 gi|258553549|gb|ACV76491.1| SNF2-related protein [Nakamurella multipartita DSM 44233]
          Length = 1141

 Score = 40.4 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            GRT D+    ++ +  G  P+      + G GLNL    +  +    WW+     Q I+R
Sbjct: 1020 GRTKDRS-AVVEAFRTGVAPVFLISLKAGGFGLNLTEA-DYCILLDPWWNPAAEAQAIDR 1077

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + V VY  +A+ TI+E V+     K+ + D +L A
Sbjct: 1078 -----AHRIGQTKNVIVYRYVARGTIEEKVMALKAGKAKLFDDVLGA 1119


>gi|261368900|ref|ZP_05981783.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282568998|gb|EFB74533.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 811

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++ +    +      + G GLNL    +++++   WW+    QQ I+R       + G
Sbjct: 705 VEQFEKASAGIFLISIKAGGVGLNLTSAQDVIIY-DPWWNPFVEQQAIDR-----AYRIG 758

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ++AV VY L+A NTI+E +L   + K    + L+N +  +
Sbjct: 759 QQQAVNVYKLVAANTIEEKILDMQKDKEQDFEELINGISTD 799


>gi|3329473|gb|AAC26857.1| RAD54 DNA repair protein [Drosophila melanogaster]
          Length = 628

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 424 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 477

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 478 ILQRQTHKKSLSSTIID 494


>gi|156845511|ref|XP_001645646.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116312|gb|EDO17788.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 941

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           LL +    CG  L    G N L+     W+    QQ + R+      + G K+  F+Y  
Sbjct: 772 LLSSKAGGCGINL---IGANRLILLDPDWNPAADQQALARVW-----RDGQKKDCFIYRF 823

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           IA  TI+E V QR   K ++   +++A
Sbjct: 824 IATGTIEEKVYQRQSMKMSLSSCVVDA 850


>gi|72012428|ref|XP_783733.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
 gi|115973296|ref|XP_001183354.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
          Length = 834

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  TI+E 
Sbjct: 667 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKRCFIYRLLATGTIEEK 720

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 721 IFQRQAHKKALSSCVVD 737


>gi|83591548|ref|YP_425300.1| SNF2 helicase-like protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574462|gb|ABC21013.1| SNF2 helicase-related protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1209

 Score = 40.4 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+D   +  +  G +P+      + G GL L    + ++ +  WW+       +E 
Sbjct: 1089 GETRDRD-TPVTRFQSGAVPVFLISLKAGGTGLTLT-AADTVIHYDPWWN-----PAVEA 1141

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  + VFV+ L+A  T++E +L     K  + D L + 
Sbjct: 1142 QATDRAHRIGQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGLFDG 1188


>gi|229004592|ref|ZP_04162330.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
 gi|228756633|gb|EEM05940.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
          Length = 887

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 781 FNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 834

Query: 164 AVFVYYLIAQNTIDE 178
            V V  L+A  TI+E
Sbjct: 835 TVQVIKLVAHGTIEE 849


>gi|260815483|ref|XP_002602502.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
 gi|229287813|gb|EEN58514.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T+ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q + R
Sbjct: 504 TIKKRAKVVERFNNPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMAR 562

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G K+  ++Y L+A  TI+E + QR   K  +   +++
Sbjct: 563 VW-----RDGQKKQCYIYRLLATGTIEEKIFQRQAHKKALSSCVVD 603


>gi|228920559|ref|ZP_04083904.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
 gi|228839189|gb|EEM84485.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
          Length = 1064

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGNLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|242047042|ref|XP_002461267.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
 gi|241924644|gb|EER97788.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
          Length = 1205

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EGK  +L A   +C  G++L  G + LV     W+  + +Q I      R  + G +R V
Sbjct: 1082 EGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI-----ARAFRPGQERMV 1135

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            FVY L+A  T +E      R K+ I  ++ 
Sbjct: 1136 FVYLLVASGTWEEDKYNSNRRKAWIAKMVF 1165


>gi|241950361|ref|XP_002417903.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
 gi|223641241|emb|CAX45621.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
          Length = 839

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + ++N+   P  +      + G G+NL  G N LV     W+    QQ + R+      +
Sbjct: 656 VDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQQALARVW-----R 709

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  F+Y LI+  TI+E + QR   K ++   +++
Sbjct: 710 DGQKKDCFIYRLISTGTIEEKIFQRQSMKMSLSSCVVD 747


>gi|26554357|ref|NP_758291.1| helicase/SNF2 domain-containing protein [Mycoplasma penetrans HF-2]
 gi|26454367|dbj|BAC44695.1| helicase with SNF2 domain [Mycoplasma penetrans HF-2]
          Length = 1041

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  I +      + G GL L    N ++ +  WW+L      +E     R  + G ++ 
Sbjct: 935  NKNNIKIFLISLKAGGTGLTLT-SANAVIHYDPWWNLS-----LENQATDRAHRIGQEKN 988

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETIHV 205
            VF+Y LI +++I+E +L    +K  I + +   N+  K +I++
Sbjct: 989  VFIYKLIVKDSIEEKILSLQESKREIINQIFDENSSNKNSINI 1031


>gi|325118669|emb|CBZ54220.1| hypothetical protein NCLIV_046520 [Neospora caninum Liverpool]
          Length = 1703

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  + +L     + G GLNLQ    I      WW+     Q I+R     QRQ    + 
Sbjct: 1597 NDPSLKVLLISLKAGGEGLNLQIASRIF-LMDPWWNPAAEMQAIQRAHRIGQRQ----KE 1651

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 1652 VIAVRFIAEKTIEERILQLQEKKQLVFDGTVGA 1684


>gi|168051599|ref|XP_001778241.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162670338|gb|EDQ56908.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1245

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  K   L +  A  G G+NL     ++++ S W    + Q M       R  + G +  
Sbjct: 684 NSTKFCFLLSTRAG-GLGINLATADTVIIYDSDWNPHADLQAM------ARAHRLGQQNK 736

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           V ++ L+ + TI+E ++Q  + K  ++ L++  +KKE I+
Sbjct: 737 VMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRMKKENIN 776


>gi|302681469|ref|XP_003030416.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
 gi|300104107|gb|EFI95513.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
          Length = 1312

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 630 AGGLGINLETADTVIIFDSDWNPQNDLQAM------ARAHRIGQKSHVSVYRFVSKDTVE 683

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E +L++ + K  ++  ++N +     H+
Sbjct: 684 EEILEKAKAKMVLEYAIINQMDTTQAHL 711


>gi|300784409|ref|YP_003764700.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299793923|gb|ADJ44298.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 933

 Score = 40.4 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+IP+      + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 821 VDRFQAGEIPVFLLSLKAGGVGLNLTRATHV-IHYDRWWN-----PAVEDQATDRAYRIG 874

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ T++E + Q L  K  + + ++ A
Sbjct: 875 QDRPVQVHRLIAEGTLEERIAQVLEKKRGLAESIVGA 911


>gi|195398201|ref|XP_002057711.1| GJ18280 [Drosophila virilis]
 gi|292630877|sp|B4M9A8|RAD54_DROVI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194141365|gb|EDW57784.1| GJ18280 [Drosophila virilis]
          Length = 786

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L+A  +I+E 
Sbjct: 574 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRLVASGSIEEK 627

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 628 ILQRQTHKKSLSSSIID 644


>gi|320039340|gb|EFW21274.1| SNF2 family domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 797

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 631 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 684

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   ++++
Sbjct: 685 IFQRQSHKQLLSSCVVDS 702


>gi|228996916|ref|ZP_04156549.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
 gi|228762795|gb|EEM11709.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
          Length = 1025

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +NEG+  L      + G GLNL  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 919 FNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQ-----AADRAYRMGQKN 972

Query: 164 AVFVYYLIAQNTIDE 178
            V V  L+A  TI+E
Sbjct: 973 TVQVIKLVAHGTIEE 987


>gi|62738897|pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           Eukaryotic Rad54
          Length = 644

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 480 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 533

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K  +   +++
Sbjct: 534 ILQRQAHKKALSSCVVD 550


>gi|261408135|ref|YP_003244376.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261284598|gb|ACX66569.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 1111

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +NEG+  +      + G GLNL    + ++ + LWW+    QQ ++     R  + G 
Sbjct: 1001 ERFNEGEREVFLISLKAGGTGLNLTG-ADTVILYDLWWNPAVEQQAMD-----RAHRIGQ 1054

Query: 162  KRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLL 194
            K+ V V   ++Q+TI D++V  + + K  I++L+
Sbjct: 1055 KKVVQVIRFVSQDTIEDKMVALQQKKKDLIEELV 1088


>gi|15230608|ref|NP_187252.1| ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|6671969|gb|AAF23228.1|AC013454_15 putative transcriptional regulator [Arabidopsis thaliana]
          Length = 1132

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    ++++NE   P  +      + G GLNLQ    +++F S W     + QM ++  
Sbjct: 796 DQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQM-DQQA 849

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K+ V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 850 EDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQA 894


>gi|327351006|gb|EGE79863.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 931

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GR--TLD 95
           E    KI+AL  I+     AP      F+  ++ L    PQ            GR  +  
Sbjct: 755 ETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARIDGRMSSAK 814

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    +L A    C  GLNL    N ++    WW      Q ++R+    
Sbjct: 815 RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV---- 869

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 870 -YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 903


>gi|239610082|gb|EEQ87069.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 931

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GR--TLD 95
           E    KI+AL  I+     AP      F+  ++ L    PQ            GR  +  
Sbjct: 755 ETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARIDGRMSSAK 814

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    +L A    C  GLNL    N ++    WW      Q ++R+    
Sbjct: 815 RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV---- 869

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 870 -YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 903


>gi|261198487|ref|XP_002625645.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239594797|gb|EEQ77378.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 929

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GR--TLD 95
           E    KI+AL  I+     AP      F+  ++ L    PQ            GR  +  
Sbjct: 753 ETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARIDGRMSSAK 812

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    +L A    C  GLNL    N ++    WW      Q ++R+    
Sbjct: 813 RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV---- 867

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 868 -YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 901


>gi|205375279|ref|ZP_03228069.1| SNF2 family helicase [Bacillus coahuilensis m4-4]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q++  G+ P+      + G GLNL    N +V +  WW+       +E     R  + G
Sbjct: 139 VQQFQNGEFPVFILSLKAGGTGLNLT-AANHVVHYDRWWN-----PAVENQATDRAYRIG 192

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA  T++E +   L  K  + D ++ +
Sbjct: 193 QTKFVHVHKLIASGTLEEKIDGMLEKKQALNDDIIQS 229


>gi|167535609|ref|XP_001749478.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772106|gb|EDQ85763.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1903

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     I++F S W    + Q       + R  + G K  V VY  ++ NT++E 
Sbjct: 1023 GLGINLTTADTIIIFDSDWNPHADLQ------ALARAHRIGQKNLVMVYRFVSVNTVEER 1076

Query: 180  VLQRLRTKSTI-QDLLLNALKKETI 203
            +L+R R K  + Q + ++ LKK  +
Sbjct: 1077 ILRRAREKLRLDQAVRMDKLKKSEL 1101


>gi|79748111|ref|NP_001032178.1| helicase, lymphoid-specific [Danio rerio]
 gi|52001265|gb|AAU21503.1| PASG [Danio rerio]
          Length = 853

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERI 151
           D+D    +  ++ ++ L      + G G+NL     +++F S W    DL+  Q    RI
Sbjct: 669 DRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQ-AQDRCHRI 727

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G T+         V V+ LI  NTIDE +L+R   K  ++ +++
Sbjct: 728 GQTK--------PVVVHRLITANTIDEKILERASAKRKLEKMVI 763


>gi|15896248|ref|NP_349597.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026052|gb|AAK80937.1|AE007796_7 Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510403|gb|ADZ22039.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1052

 Score = 40.0 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 66   ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIPLLFAH 115
            AN   I+V   F S L  ++           +  G T  KD   +  E+N+GK  +    
Sbjct: 895  ANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNTKMKDRFQLADEFNKGKGEVFLIS 954

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL  G +I+V F  WW+       +E     R  + G K+ V +  LI + T
Sbjct: 955  LKAGGTGLNLT-GADIVVHFDPWWN-----PAVENQASDRAHRIGQKKNVEIIKLITRGT 1008

Query: 176  IDELVLQRLRTKSTIQDLLL 195
            I+E + +  + K  + D +L
Sbjct: 1009 IEEKIYKLQQEKKKMVDNVL 1028


>gi|307776522|pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-Atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY L++++T++
Sbjct: 634 AGGLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRLVSKDTVE 687

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 688 EEVLERARKKMILE 701


>gi|303390899|ref|XP_003073680.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302827|gb|ADM12320.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 879

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I++W      +      + G G+NL     ++ + S W    + Q M       R  + G
Sbjct: 781 IRDWQTNDKFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAM------DRAHRLG 834

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V VY LI + T++E VL+    K  IQ ++++ 
Sbjct: 835 QTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVIHG 871


>gi|302691444|ref|XP_003035401.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
 gi|300109097|gb|EFJ00499.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
          Length = 842

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  K   L +  A  G G+NL  G N L+ F   W+    QQ + R+      + G K+ 
Sbjct: 667 NTEKFVFLLSSKAG-GCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKE 719

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FVY  I+  TI+E + QR   K  +   +++
Sbjct: 720 CFVYRFISTGTIEEKIFQRQANKQALSSSVVD 751


>gi|224165209|ref|XP_002338786.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
 gi|222873460|gb|EEF10591.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
          Length = 101

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 103 EWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++  G+I P L A+    G G+NL     +      WW+ E  +Q I+R+      Q G 
Sbjct: 5   QYTPGRIFPTLLANVKVSGAGINLTAASEVY-LMEPWWNSEFEEQAIDRV-----HQYGQ 58

Query: 162 KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNALKK 200
           ++ V +  LI Q++I+E +++ + R K  I+   +   K+
Sbjct: 59  EKNVIIVRLIVQDSIEERILMMQERKKQAIEAFGMQGPKE 98


>gi|303311053|ref|XP_003065538.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105200|gb|EER23393.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 799

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 633 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 686

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   ++++
Sbjct: 687 IFQRQSHKQLLSSCVVDS 704


>gi|330504452|ref|YP_004381321.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
 gi|328918738|gb|AEB59569.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
          Length = 876

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D+    ++ +  G+ P+      + G GLNL    + ++ F  WW+     Q  +R
Sbjct: 756 GSTQDRR-TPVERFQAGEFPVFLISLKAGGSGLNL-TAADTVIHFDPWWNPAAEAQASDR 813

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
                  + G  + VFVY LIA+ +++E
Sbjct: 814 A-----YRIGQDKPVFVYKLIARGSVEE 836


>gi|258405011|ref|YP_003197753.1| SNF2-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257797238|gb|ACV68175.1| SNF2-related protein [Desulfohalobium retbaense DSM 5692]
          Length = 1068

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  + 
Sbjct: 964  NNPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWN-----PAVEDQATDRTHRIGQTKK 1017

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI +NT++E +L+    K  + + ++
Sbjct: 1018 VFSYKLICENTVEEKILKLQEQKKGVAEAII 1048


>gi|322791142|gb|EFZ15704.1| hypothetical protein SINV_11452 [Solenopsis invicta]
          Length = 843

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +  K+ LL A     G GLNL  G + LV F   W+     Q + RI      + G KR 
Sbjct: 645 DNSKVLLLSAKAG--GVGLNLP-GASRLVLFDSDWNPASDMQAMARIW-----RDGQKRN 696

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V++Y L+   TI+E + QR  +K+ + + +++
Sbjct: 697 VYIYRLLTTGTIEEKIYQRQISKANLSESVVD 728


>gi|289773131|ref|ZP_06532509.1| helicase [Streptomyces lividans TK24]
 gi|289703330|gb|EFD70759.1| helicase [Streptomyces lividans TK24]
          Length = 988

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G  P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 874 VRRFQDGDAPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 927

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 928 QTRPVQVHRLIAEGTIEDRIAALLNCKRELADAVLGS 964


>gi|256789242|ref|ZP_05527673.1| helicase [Streptomyces lividans TK24]
          Length = 887

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G  P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 773 VRRFQDGDAPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 826

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 827 QTRPVQVHRLIAEGTIEDRIAALLNCKRELADAVLGS 863


>gi|227893708|ref|ZP_04011513.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
 gi|227864568|gb|EEJ71989.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
          Length = 1180

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+E+N  + P +F     + G G+NL    ++++ +  WW+L    Q  +R       + 
Sbjct: 1071 IREFNTMEQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNLAAENQATDR-----AHRI 1124

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K +V VY ++ +NTI+E +++  + K+ +   +L
Sbjct: 1125 GQKHSVKVYKMVTKNTIEERIIKLQQKKAELAQAIL 1160


>gi|221124460|ref|XP_002165434.1| PREDICTED: similar to TATA-binding protein-associated factor 172
           [Hydra magnipapillata]
          Length = 562

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +Q +   ++P+L     + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 425 VQRFQNQEVPVLLVSLKTGGVGLNL-TAADTVIHMDPWWN-----PAVEEQATARAHRIG 478

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + VFVY L+ + +I+E +L+    K  + D +L 
Sbjct: 479 QDQPVFVYKLVVEGSIEERMLELQARKLALSDSVLG 514


>gi|311063653|ref|YP_003970378.1| helicase [Bifidobacterium bifidum PRL2010]
 gi|310865972|gb|ADP35341.1| Helicase [Bifidobacterium bifidum PRL2010]
          Length = 1339

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            A P+ R L+     +  +N    P+      +   GLNL  G  ++V    WW+     Q
Sbjct: 1217 ATPKKRRLE----LVDRFNADATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQ 1271

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +R       + G  + V VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1272 ATDR-----AHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|310286756|ref|YP_003938014.1| helicase [Bifidobacterium bifidum S17]
 gi|309250692|gb|ADO52440.1| helicase [Bifidobacterium bifidum S17]
          Length = 1339

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            A P+ R L+     +  +N    P+      +   GLNL  G  ++V    WW+     Q
Sbjct: 1217 ATPKKRRLE----LVDRFNADATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQ 1271

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +R       + G  + V VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1272 ATDR-----AHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|292630953|sp|B4NXB8|RAD54_DROYA RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
          Length = 784

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y ++A  +I+E 
Sbjct: 580 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRMVASGSIEEK 633

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 634 ILQRQTHKKSLSSTIID 650


>gi|224282308|ref|ZP_03645630.1| helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139453|ref|ZP_07801646.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
 gi|313131963|gb|EFR49580.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 1339

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            A P+ R L+     +  +N    P+      +   GLNL  G  ++V    WW+     Q
Sbjct: 1217 ATPKKRRLE----LVDRFNADATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQ 1271

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +R       + G  + V VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1272 ATDR-----AHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|320353039|ref|YP_004194378.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320121541|gb|ADW17087.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 1447

 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  G+  L      + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 1338 VEAFQAGQGDLFLISLKAGGLGLNLT-AADYVIHMDPWWN-----PAVEDQASDRAHRIG 1391

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +R V VY L+AQ TI+E +++    K  + D LL+A
Sbjct: 1392 QQRPVTVYRLVAQQTIEEKIVRLHAEKRDLADSLLDA 1428


>gi|223936025|ref|ZP_03627939.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223895247|gb|EEF61694.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1046

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+     +   + +IP+      + G GLNL    + ++ F  WW+       +E 
Sbjct: 927  GATKDRAQVVERFQRDSRIPVFLISLKAGGTGLNLTG-ADTVIHFDPWWN-----PAVEA 980

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLL 194
                R  + G KR V  Y LI + T++E +L  + R ++  Q +L
Sbjct: 981  QATDRAHRIGQKRVVTSYKLITRGTVEEKILNLQTRKRALFQGML 1025


>gi|302655807|ref|XP_003019687.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
 gi|291183425|gb|EFE39042.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
          Length = 629

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G  +  FVY  IA  TI+E 
Sbjct: 463 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQSKDCFVYRFIATGTIEEK 516

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K ++   ++++
Sbjct: 517 IFQRQSHKQSLSSCVVDS 534


>gi|296327606|ref|ZP_06870151.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155280|gb|EFG96052.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|237745383|ref|ZP_04575864.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229432612|gb|EEO42824.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|168012021|ref|XP_001758701.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162690311|gb|EDQ76679.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1220

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G +  V ++ L+ + TI+
Sbjct: 696 AGGLGINLATADTVIIYDSDWNPHADLQAM------ARAHRLGQQNKVMIFRLVTRGTIE 749

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
           E ++Q  + K  ++ L++  +KKE I+
Sbjct: 750 ERMMQMTKKKMVLEHLVVGRMKKENIN 776


>gi|320103193|ref|YP_004178784.1| SNF2-like protein [Isosphaera pallida ATCC 43644]
 gi|319750475|gb|ADV62235.1| SNF2-related protein [Isosphaera pallida ATCC 43644]
          Length = 1912

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  +P+      + G GLNL      +     WW+     Q I+R       + G    
Sbjct: 1808 NDPNVPVFLISLKAGGLGLNLT-AAEYVYLLDPWWNPAVEAQAIDR-----SHRIGQTSH 1861

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LI ++T+++ +++  +TK  + D +L
Sbjct: 1862 VFAYRLICRDTVEQKIIELQKTKRALADAIL 1892


>gi|256028234|ref|ZP_05442068.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289766166|ref|ZP_06525544.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289717721|gb|EFD81733.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|239918579|ref|YP_002958137.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
 gi|239839786|gb|ACS31583.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
          Length = 1143

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D   ++ A+  G T  +    I+ + EG+ P+      + G GL L     + +    WW
Sbjct: 1007 DHLEIEHAYLDGSTRGRAD-VIRGFREGEAPVFLISLKAGGFGLTLTEADYVFLM-DPWW 1064

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +     Q ++R       + G +R V VY L+++ TI+E VL+
Sbjct: 1065 NPAAEAQAVDR-----AHRIGQERTVMVYRLVSEGTIEEKVLE 1102


>gi|151943650|gb|EDN61960.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 722 EGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 775

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 776 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|326427315|gb|EGD72885.1| hypothetical protein PTSG_12193 [Salpingoeca sp. ATCC 50818]
          Length = 2049

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     + ++ S W    ++Q       + R  + G KR V VY L+A+ T+DE 
Sbjct: 1489 GLGINLNTADTVFIYDSDWNPHMDNQ------AIARAHRIGQKRLVMVYRLVAKGTVDEK 1542

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            ++++ R K  + + ++    K
Sbjct: 1543 IVEQARKKLALDEAVVEQKHK 1563


>gi|312959636|ref|ZP_07774153.1| SNF2-like protein [Pseudomonas fluorescens WH6]
 gi|311286353|gb|EFQ64917.1| SNF2-like protein [Pseudomonas fluorescens WH6]
          Length = 896

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           A   G+T D+    ++++  GK+ +      + G GLNL     + + +  WW+     Q
Sbjct: 766 ALLTGQTRDRR-TPVKDFQSGKLQIFLISLKAGGVGLNLTEADTV-IHYDPWWNPATENQ 823

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G ++ VFVY +IA+ T++E +    + KS +   +L+ 
Sbjct: 824 ATD-----RAYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLDG 869


>gi|256272233|gb|EEU07224.1| Rad54p [Saccharomyces cerevisiae JAY291]
 gi|259146347|emb|CAY79604.1| Rad54p [Saccharomyces cerevisiae EC1118]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 722 EGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 775

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 776 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|302879469|ref|YP_003848033.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
 gi|302582258|gb|ADL56269.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
          Length = 1100

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             ++++ +G++P+      + G GLNL    + ++ +  WW+       +E     R  + 
Sbjct: 983  VVRQFQDGEVPIFLISLKAGGVGLNLT-SADTVIHYDPWWN-----PAVENQATDRAHRL 1036

Query: 160  GFKRAVFVYYLIAQNTIDELVL 181
            G  + VFVY L+   +I+E +L
Sbjct: 1037 GQTKNVFVYKLVVAGSIEEKIL 1058


>gi|229589086|ref|YP_002871205.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|229360952|emb|CAY47812.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 897

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           A   G+T D+    ++++  GK+ +      + G GLNL     + + +  WW+     Q
Sbjct: 767 ALLTGQTRDRR-TPVKDFQSGKLQIFLISLKAGGVGLNLTEADTV-IHYDPWWNPATENQ 824

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G ++ VFVY +IA+ T++E +    + KS +   +L+ 
Sbjct: 825 ATD-----RAYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLDG 870


>gi|190407107|gb|EDV10374.1| DNA repair and recombination protein RAD54 [Saccharomyces
           cerevisiae RM11-1a]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 722 EGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 775

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 776 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|309774808|ref|ZP_07669829.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917366|gb|EFP63085.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 520

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +N    P+      + G GLNL     +++ F  WW++    Q        R  + G
Sbjct: 413 VNSFNSDDTPVFLISLKAGGTGLNLT-SAEVVIHFDPWWNVSAQNQ-----ATDRAYRIG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V V  LIA++TI+E ++Q    K  + D ++
Sbjct: 467 QHNNVQVVKLIAKDTIEEKIMQLQSLKQDLSDSII 501


>gi|260495666|ref|ZP_05815790.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
 gi|260196849|gb|EEW94372.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|50547625|ref|XP_501282.1| YALI0C00363p [Yarrowia lipolytica]
 gi|49647149|emb|CAG81577.1| YALI0C00363p [Yarrowia lipolytica]
          Length = 1320

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 692 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 745

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 746 EQVLERARKKMILE 759


>gi|19111970|ref|NP_595178.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723497|sp|Q10332|YBMA_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C582.10c
 gi|5420446|emb|CAB46673.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe]
          Length = 830

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 119 CGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           CG  GLNL     + +   +WW+    +Q I+R+      + G +R V VY L+ +NTI+
Sbjct: 731 CGALGLNLTCASRV-ILCDVWWNPAIEEQAIDRV-----HRIGQRRDVLVYKLVVENTIE 784

Query: 178 ELVLQ 182
           E +++
Sbjct: 785 EKIVE 789


>gi|166240364|ref|XP_638342.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988561|gb|EAL64859.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1604

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 101  IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGV 153
            + EWN    P    +L  H  + G G+NLQ    +++F S W    DL+  Q    RIG 
Sbjct: 997  VVEWNRPDSPFWIFVLSTH--AGGLGMNLQTADTVIIFDSDWNPQMDLQA-QDRCHRIGQ 1053

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            T         +V V+ LI+ N+I+E +L R   K  I   ++ A
Sbjct: 1054 T--------NSVSVFRLISANSIEEKILGRATDKLEIDAKIIQA 1089


>gi|32141133|ref|NP_733524.1| helicase [Streptomyces coelicolor A3(2)]
 gi|24413742|emb|CAD55164.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 890

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G  P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 776 VRRFQDGDAPVFLLSLKAAGTGLNLTRAEHV-VHYDRWWN-----PAVEAQATDRAYRIG 829

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ TI++ +   L  K  + D +L +
Sbjct: 830 QTRPVQVHRLIAEGTIEDRIAALLNRKRELADAVLGS 866


>gi|84495493|ref|ZP_00994612.1| SNF2-like [Janibacter sp. HTCC2649]
 gi|84384986|gb|EAQ00866.1| SNF2-like [Janibacter sp. HTCC2649]
          Length = 1099

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R++  D    + EA+   + + K   L         E H   V  +    L ++ ++   
Sbjct: 912  RQMALDPSLVDAEAYGGVAPSAKVEALVEQVAELAAEGHRALVFSQFTSFLSIVRDRLEE 971

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
              I  AY   S   R                 ++E+ EG+ P+      + G GL L   
Sbjct: 972  EGIAYAYLDGSTRNRAD--------------VVKEFREGEAPVFLISLKAGGFGLTLTEA 1017

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
              + V    WW+     Q I+     R  + G  ++V VY L++ +TI+E V+
Sbjct: 1018 DYVFV-LDPWWNPAAENQAID-----RAHRIGQTKSVNVYRLVSTDTIEEKVV 1064


>gi|304389525|ref|ZP_07371488.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327335|gb|EFL94570.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 988

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A +  A+  G + D+D   +  +  G++ +      + G GLNL     + +    WW
Sbjct: 858 DQAGIDYAYLDGTSRDRDR-QVARFQNGEVDVFLISLKAGGFGLNLTQADYVFLT-DPWW 915

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +     Q ++R       + G KR V VY L+A +TI++ VL+
Sbjct: 916 NPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLE 953


>gi|19704721|ref|NP_604283.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715039|gb|AAL95582.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 892

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 773 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 831

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 832 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 872


>gi|6321275|ref|NP_011352.1| Rad54p [Saccharomyces cerevisiae S288c]
 gi|417577|sp|P32863|RAD54_YEAST RecName: Full=DNA repair and recombination protein RAD54
 gi|172343|gb|AAA34949.1| recombination and repair protein [Saccharomyces cerevisiae]
 gi|728692|emb|CAA88534.1| RAD54 [Saccharomyces cerevisiae]
 gi|1322760|emb|CAA96875.1| RAD54 [Saccharomyces cerevisiae]
 gi|285812049|tpg|DAA07949.1| TPA: Rad54p [Saccharomyces cerevisiae S288c]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 722 EGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 775

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 776 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|325279022|ref|YP_004251564.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
 gi|324310831|gb|ADY31384.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
          Length = 994

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL     + +    WW++    Q      V+R  + G KRAVFVY  I   T++
Sbjct: 906 AGGVGLNLTEADYVFIL-DPWWNVAAENQ-----AVSRAHRIGQKRAVFVYRFITAGTLE 959

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +L     K  + D ++ A
Sbjct: 960 EKILAIQERKQRLADSVITA 979


>gi|298346771|ref|YP_003719458.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236832|gb|ADI67964.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 988

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A +  A+  G + D+D   +  +  G++ +      + G GLNL     + +    WW
Sbjct: 858 DQAGIDYAYLDGTSRDRDR-QVARFQNGEVDVFLISLKAGGFGLNLTQADYVFLT-DPWW 915

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +     Q ++R       + G KR V VY L+A +TI++ VL+
Sbjct: 916 NPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLE 953


>gi|29826907|ref|NP_821541.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29604004|dbj|BAC68076.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 950

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL    ++ V +  WW+       +E     R  + G
Sbjct: 837 VDRFQRGEVPVFLLSLKAAGTGLNLTRATHV-VHYDRWWN-----PAVEDQATDRAYRIG 890

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ LIA+ T+++ V + L  K  + D ++ +
Sbjct: 891 QDKPVQVHKLIAEGTVEDKVAKLLEAKRALADAVVGS 927


>gi|83646526|ref|YP_434961.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83634569|gb|ABC30536.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis
           KCTC 2396]
          Length = 947

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 22/166 (13%)

Query: 46  KHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSD--LA-RLQKAFPQGR----TLD 95
           KH K  +D K++ L+ II+        P+I   +  +   LA  L  AFPQ      T D
Sbjct: 456 KHLKSGNDPKLQTLKQIIKPVLDEGYNPVIFCRYIATAEYLADELNSAFPQREVIHVTGD 515

Query: 96  KDPC----TIQEWNEG-KIPLLFAHPASC-GHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             P      I++  E  K PLL A    C   G+NLQ   N ++ + L W+   H+Q   
Sbjct: 516 LTPTERLERIEQLKESDKAPLLVA--TDCLSEGVNLQEQFNAVIHYDLSWNPTRHEQREG 573

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR-LRTKSTIQDLL 194
           R+    Q+    K    +YY   +N +D  VLQ  LR   +I+  L
Sbjct: 574 RVDRFGQKAKNVK--ALMYY-GEENPVDGAVLQVILRKAESIRKAL 616


>gi|324507205|gb|ADY43057.1| DNA repair and recombination protein RAD54-like protein [Ascaris
           suum]
          Length = 755

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + RI      + G K+  F+Y L+A  TI+E 
Sbjct: 589 GCGLNL-IGANRLVMFDPDWNPANDDQAMARIW-----RDGQKKHCFIYRLLATGTIEEK 642

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 643 MFQRQTHKKALSSCVVD 659


>gi|297742194|emb|CBI33981.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/157 (18%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE- 106
           + E  +EK+      ++        + YHF+  + +        R + +   +I  +N+ 
Sbjct: 355 FSETMNEKVLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDP 414

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             ++ +L A   +C  G++L  G + ++   + W+       +ER  ++R  + G ++ V
Sbjct: 415 ASQVRVLLASTKACSEGISL-VGASRVILLDVVWN-----PSVERQAISRAYRLGQRKVV 468

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++Y+L+   T++E    R   K  + +L+ ++  K +
Sbjct: 469 YIYHLLTSGTMEEEKYCRQAKKDRLSELVFSSKDKTS 505


>gi|50306047|ref|XP_452985.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642118|emb|CAH01836.1| KLLA0C17578p [Kluyveromyces lactis]
          Length = 1525

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 785 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 838

Query: 178 ELVLQRLRTK 187
           E VL+R R K
Sbjct: 839 EEVLERARKK 848


>gi|315656771|ref|ZP_07909658.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492726|gb|EFU82330.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 988

 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A +  A+  G + D+D   +  +  G++ +      + G GLNL     + +    WW
Sbjct: 858 DQAGIDYAYLDGTSRDRDR-QVARFQNGEVDVFLISLKAGGFGLNLTQADYVFLT-DPWW 915

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +     Q ++R       + G KR V VY L+A +TI++ VL+
Sbjct: 916 NPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLE 953


>gi|312383263|gb|EFR28419.1| hypothetical protein AND_03670 [Anopheles darlingi]
          Length = 814

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 592 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLATGSIEEK 645

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 646 IFQRQTHKKALSTTVVD 662


>gi|255718763|ref|XP_002555662.1| KLTH0G14498p [Lachancea thermotolerans]
 gi|238937046|emb|CAR25225.1| KLTH0G14498p [Lachancea thermotolerans]
          Length = 1436

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 754 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 807

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 808 EEVLERARKKMILE 821


>gi|195470937|ref|XP_002087763.1| GE14966 [Drosophila yakuba]
 gi|194173864|gb|EDW87475.1| GE14966 [Drosophila yakuba]
          Length = 772

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y ++A  +I+E 
Sbjct: 568 GCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRMVASGSIEEK 621

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K ++   +++
Sbjct: 622 ILQRQTHKKSLSSTIID 638


>gi|325095596|gb|EGC48906.1| transcription factor [Ajellomyces capsulatus H88]
          Length = 929

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +L A    C  GLNL    N ++    WW        IE   V R  + G KR 
Sbjct: 822 NDSNCTVLLASLNVCSVGLNL-VAANQVILADSWW-----APAIEDQAVDRVYRLGQKRP 875

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ L+ +N+I++ VL + + K T+
Sbjct: 876 TTIWRLVMENSIEDRVLDKQKEKRTL 901


>gi|308499699|ref|XP_003112035.1| CRE-RAD-54 protein [Caenorhabditis remanei]
 gi|308268516|gb|EFP12469.1| CRE-RAD-54 protein [Caenorhabditis remanei]
          Length = 1096

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 903 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEK 956

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 957 MFQRQTHKKALSSCVVS 973


>gi|262377834|ref|ZP_06071049.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262307224|gb|EEY88372.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 1115

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T  +D   I  +  G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 996  GKTKKRDEV-ITAFQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDR 1053

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFVY LI   +I+E ++   + K+ +   +L+ 
Sbjct: 1054 AW-----RIGQDKPVFVYKLITNKSIEEKIIALQQNKAELAQSILST 1095


>gi|320581684|gb|EFW95903.1| Nucleosome remodeling factor [Pichia angusta DL-1]
          Length = 1384

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 753 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 806

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 807 EQVLERARRKMILE 820


>gi|149244356|ref|XP_001526721.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449115|gb|EDK43371.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1500

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 806 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNQVLVYRFVSKDTVE 859

Query: 178 ELVLQRLRTKSTIQ 191
           E +L+R R K  ++
Sbjct: 860 EQILERARKKMILE 873


>gi|283851358|ref|ZP_06368640.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
 gi|283573308|gb|EFC21286.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
          Length = 1072

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y +I QNT++
Sbjct: 981  AGGTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRIGQKRQVFSYKMICQNTVE 1034

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L+    K  + + ++
Sbjct: 1035 EKILKLQEQKKDVAEAII 1052


>gi|315655316|ref|ZP_07908216.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490256|gb|EFU79881.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 988

 Score = 40.0 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D A +  A+  G + D+D   +  +  G++ +      + G GLNL     + +    WW
Sbjct: 858 DQAGIDYAYLDGTSRDRDR-QVARFQNGEVDVFLISLKAGGFGLNLTQADYVFLT-DPWW 915

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +     Q ++R       + G KR V VY L+A +TI++ VL+
Sbjct: 916 NPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLE 953


>gi|302792356|ref|XP_002977944.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
 gi|300154647|gb|EFJ21282.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
          Length = 835

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    N+ V    WW+    +Q ++R+      + G  R V V+ L+A ++I+
Sbjct: 763 AAGVGLNLVSASNV-VMLDPWWNPAAEEQAMDRV-----HRLGQTRDVHVFRLVATDSIE 816

Query: 178 ELVLQ 182
           E +LQ
Sbjct: 817 ERLLQ 821


>gi|294786039|ref|ZP_06751326.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
 gi|294486376|gb|EFG33739.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|237740914|ref|ZP_04571395.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
 gi|229431211|gb|EEO41423.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|225557865|gb|EEH06150.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           G186AR]
          Length = 928

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +L A    C  GLNL    N ++    WW      Q ++R+      + G KR 
Sbjct: 821 NDSNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV-----YRLGQKRP 874

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ L+ +N+I++ VL + + K T+
Sbjct: 875 TTIWRLVMENSIEDRVLDKQKEKRTL 900


>gi|254304375|ref|ZP_04971733.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324567|gb|EDK89817.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 899

 Score = 40.0 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|94271432|ref|ZP_01291955.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93450447|gb|EAT01631.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 940

 Score = 40.0 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++  G   L      + G GLNL  G + ++    WW+    QQ  +R       + G
Sbjct: 833 VEDFQRGGKDLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQQASDR-----AHRIG 886

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V VY LI  NTI+E +L   + K  +   LL+ 
Sbjct: 887 QDRPVTVYRLITSNTIEEKILSLHQRKRNLAGDLLDG 923


>gi|222475692|ref|YP_002564213.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454063|gb|ACM58327.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 584

 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           AF  G +  +    ++++ E G I        +   G NLQ+  N+LV   L W+     
Sbjct: 411 AFHGGHSSSEKEQIVEDFEEEGGI---LVSTDAMSEGRNLQFC-NLLVNLGLSWN---PM 463

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +M +RIG  R  + G KR VFV+ +  + T++E VL+RL
Sbjct: 464 RMEQRIG--RVHRIGQKRDVFVFNMALKGTVEEYVLERL 500


>gi|34763541|ref|ZP_00144479.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886790|gb|EAA23925.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 899

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|326444829|ref|ZP_08219563.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 980

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL    ++ V    WW+       +E     R  + G
Sbjct: 864 VTRFQNGEVPVFLLSLKAAGTGLNLTRAEHV-VHLDRWWN-----PAVEAQATDRAYRIG 917

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ LIA+ T+++ + + L  K  + D +L +
Sbjct: 918 QTRPVQVHRLIAEGTVEDRIAELLARKRELADAVLGS 954


>gi|312212592|emb|CBX92675.1| similar to chromodomain helicase (Chd1) [Leptosphaeria maculans]
          Length = 1610

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G ++ V VY L++++TI+E 
Sbjct: 862 GLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQQKPVSVYRLVSKDTIEEE 915

Query: 180 VLQRLRTKSTIQ 191
           +L+R R K  ++
Sbjct: 916 ILERARNKRMLE 927


>gi|294816509|ref|ZP_06775152.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
 gi|294329108|gb|EFG10751.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1040

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +  G++P+      + G GLNL    ++ V    WW+       +E     R  + G
Sbjct: 924  VTRFQNGEVPVFLLSLKAAGTGLNLTRAEHV-VHLDRWWN-----PAVEAQATDRAYRIG 977

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V V+ LIA+ T+++ + + L  K  + D +L +
Sbjct: 978  QTRPVQVHRLIAEGTVEDRIAELLARKRELADAVLGS 1014


>gi|256846855|ref|ZP_05552310.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
 gi|256717821|gb|EEU31379.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
          Length = 899

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  N+ +  +      + G GLNL     I ++   WW+     Q I+R
Sbjct: 780 GQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWNTTVENQAIDR 838

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VF Y +I +NTI+E +L+    K+ + D L++
Sbjct: 839 -----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|326925324|ref|XP_003208867.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Meleagris gallopavo]
          Length = 792

 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 625 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 678

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 679 IFQRQTHKKALSSCVVD 695


>gi|296138502|ref|YP_003645745.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
 gi|296026636|gb|ADG77406.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
          Length = 1081

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            ++ A+  G T D+    I+++  G++ +      + G GLNL    +       WW+   
Sbjct: 956  VEYAYLDGSTTDR-AAAIEKFTSGEVQVFLISLKAGGFGLNL-VQADYCFLLDPWWNPAA 1013

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q I+R       + G  R+V VY L++  TI++ V++    K+ +
Sbjct: 1014 EAQAIDR-----AHRIGQTRSVMVYRLVSAGTIEDKVMELKERKAAL 1055


>gi|255586403|ref|XP_002533848.1| ATP binding protein, putative [Ricinus communis]
 gi|223526215|gb|EEF28539.1| ATP binding protein, putative [Ricinus communis]
          Length = 1339

 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++ + S W    + Q M       R  + G  + V VY LI + T++E 
Sbjct: 1225 GLGINLTAADTVIFYESDWNPTLDLQAM------DRAHRLGQTKDVTVYRLICKETVEEK 1278

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +LQR   K+T+Q L++  
Sbjct: 1279 ILQRASQKNTVQQLVMTG 1296


>gi|317484163|ref|ZP_07943092.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924512|gb|EFV45669.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1343

 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 80   DLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            D A     +  G T D++    +  +  GK  L      + G GLNL    + ++    W
Sbjct: 1215 DAAGYGYQYLDGSTPDRERQAAVAAFQSGKGDLFLISLKAGGQGLNLT-AADYVIHLDPW 1273

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            W+       +E     R  + G +R V VY L+A+ T++E +L+  R+K  +
Sbjct: 1274 WN-----PAVEDQASDRAYRLGQQRPVTVYRLVARGTVEESILKLHRSKRAL 1320


>gi|326426828|gb|EGD72398.1| chromodomain helicase DNA binding protein 1 [Salpingoeca sp. ATCC
            50818]
          Length = 1534

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 118  SCGHGLNLQYGGNILVFFSLWW---DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            + G G+NL     +++F S W    DL+  Q    RIG TRQ        V +Y  +++N
Sbjct: 974  AGGLGVNLATADTVIIFDSDWNPQNDLQA-QARAHRIGQTRQ--------VNIYRFVSKN 1024

Query: 175  TIDELVLQRLRTKSTIQDLLLNAL 198
            T++E +L+R + K  +  L++  +
Sbjct: 1025 TVEEDILERAKKKMVLDHLVIQRM 1048


>gi|326428031|gb|EGD73601.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 2192

 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL     ++++ S W    + Q       + R  + G  +AV VY LI  NT+DE 
Sbjct: 475 GLGLNLTKADAVILYDSDWNPFADIQ------AIDRAHRIGQTKAVKVYRLITDNTVDEH 528

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           + QR   K     L LNAL
Sbjct: 529 IQQRAEAK-----LYLNAL 542


>gi|302810562|ref|XP_002986972.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
 gi|300145377|gb|EFJ12054.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
          Length = 849

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    N+ V    WW+    +Q ++R+      + G  R V V+ L+A ++I+
Sbjct: 758 AAGVGLNLVSASNV-VMLDPWWNPAAEEQAMDRV-----HRLGQTRDVHVFRLVATDSIE 811

Query: 178 ELVLQ 182
           E +LQ
Sbjct: 812 ERLLQ 816


>gi|225427375|ref|XP_002279753.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1084

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/158 (18%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
             + E  +EK+      ++        + YHF+  + +        R + +   +I  +N+
Sbjct: 884  RFSETMNEKVLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFND 943

Query: 107  --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               ++ +L A   +C  G++L  G + ++   + W+       +ER  ++R  + G ++ 
Sbjct: 944  PASQVRVLLASTKACSEGISL-VGASRVILLDVVWN-----PSVERQAISRAYRLGQRKV 997

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V++Y+L+   T++E    R   K  + +L+ ++  K +
Sbjct: 998  VYIYHLLTSGTMEEEKYCRQAKKDRLSELVFSSKDKTS 1035


>gi|315604148|ref|ZP_07879214.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313854|gb|EFU61905.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1045

 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 72   IVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
            +V   F S LAR++ A  +         G T D+D   I+E+  G+  +      + G G
Sbjct: 901  LVFSQFTSFLARIRGALERRGIAVVQLDGSTRDRDR-VIEEFRSGQAQVFLISLKAGGAG 959

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            L L     + V    WW+    +Q I+R       + G  + V VY L+A +TI+  V++
Sbjct: 960  LTLTEADYVYVM-DPWWNPAAEEQAIDR-----AHRIGQTKKVNVYRLVAADTIEAKVVE 1013

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   ++N 
Sbjct: 1014 LQDRKRRLISSVMNG 1028


>gi|270157430|ref|ZP_06186087.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|289164177|ref|YP_003454315.1| DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
 gi|269989455|gb|EEZ95709.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|288857350|emb|CBJ11178.1| putative DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
          Length = 1091

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++ EG  P+      + G GLNL     + + +  WW+       +E     R  + G
Sbjct: 980  VDKFQEGNTPVFLISLKAGGTGLNLTRADTV-IQYDPWWN-----PAVEAQATDRAHRIG 1033

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             +  VFVY LI   T++E +L
Sbjct: 1034 QENPVFVYKLITAGTVEEAIL 1054


>gi|311070141|ref|YP_003975064.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
 gi|310870658|gb|ADP34133.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
          Length = 924

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   ++++ + + P L     + G GLNL    N ++ +  WW+       +E     
Sbjct: 804 DRDSL-VEKFQKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 856

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G +R V V+ +I   TI+E +   L TK T+ D ++ +
Sbjct: 857 RAYRIGQERFVHVHKMITTGTIEEKIDMMLETKQTLNDQIIQS 899


>gi|294056264|ref|YP_003549922.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615597|gb|ADE55752.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 1024

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+NE   IP+      + G GLNL  G + +V +  WW+     Q  +R       + G 
Sbjct: 914 EFNEDASIPVFLISLKAGGTGLNL-TGADTVVHYDPWWNPAAEAQATDRA-----HRIGQ 967

Query: 162 KRAVFVYYLIAQNTIDELVLQ 182
           ++ V    LIA NT++E VL+
Sbjct: 968 EKVVTSIKLIAANTVEEKVLE 988


>gi|118094595|ref|XP_422447.2| PREDICTED: similar to putative recombination factor GdRad54 [Gallus
           gallus]
          Length = 804

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 637 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 690

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 691 IFQRQTHKKALSSCVVD 707


>gi|45201219|ref|NP_986789.1| AGR123Cp [Ashbya gossypii ATCC 10895]
 gi|44986073|gb|AAS54613.1| AGR123Cp [Ashbya gossypii ATCC 10895]
          Length = 1422

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 753 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 806

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 807 EEVLERARKKMILE 820


>gi|330808510|ref|YP_004352972.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376618|gb|AEA67968.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 897

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+    ++E+  GK  +      + G GLNL     + + +  WW+     Q  +R
Sbjct: 771 GQTRDRR-TPVKEFQSGKRQIFLISLKAGGVGLNLTEADTV-IHYDPWWNPATENQATDR 828

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
                  + G ++ VFVY LIA+ T++E
Sbjct: 829 A-----YRIGQEKPVFVYKLIARGTVEE 851


>gi|327439414|dbj|BAK15779.1| superfamily II DNA/RNA helicase, SNF2 family [Solibacillus silvestris
            StLB046]
          Length = 1061

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K 
Sbjct: 955  FNDGERDMFLISLKAGGTGLNLT-GADTVILYDLWWN-----PAVEEQAADRAHRMGQKE 1008

Query: 164  AVFVYYLIAQNTIDELV--LQRLRTKSTIQDLL 194
             V V  LIA  TI+E +  LQ+ + K  I D+L
Sbjct: 1009 VVQVIKLIANGTIEEKMSELQQ-KKKMLISDIL 1040


>gi|308160977|gb|EFO63440.1| Transcriptional regulator ATRX, putative [Giardia lamblia P15]
          Length = 1367

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N ++ F+  W L+  +Q      + R  + G KR V VY L   NT++E ++
Sbjct: 739 GLNLT-GANRVILFAPAWSLQIEEQ-----AIARAYRMGQKRNVVVYKLACINTLEEKMV 792

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
            R   K+ I ++ L+  K  ++
Sbjct: 793 VRQLQKAGIANVTLDDEKHRSV 814


>gi|289450552|ref|YP_003475678.1| SNF2 family N-terminal domain-containing protein [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185099|gb|ADC91524.1| SNF2 family N-terminal domain protein [Clostridiales genomosp. BVAB3
            str. UPII9-5]
          Length = 1107

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N G+  +      + G GLNL  G + ++    WW+    QQ  +R       + G
Sbjct: 998  VNKFNAGEGEVFLISLKAGGTGLNLT-GADTVILMDPWWNPAVEQQATDR-----SHRLG 1051

Query: 161  FKRAVFVYYLIAQNTIDELV 180
             +R V VY LIA+ TI+E +
Sbjct: 1052 QQRRVQVYRLIAKGTIEEKI 1071


>gi|262371025|ref|ZP_06064348.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
 gi|262314101|gb|EEY95145.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
          Length = 1115

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T  +D   I  +  G++P+      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 996  GKTKKRDEV-ITAFQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDR 1053

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFVY LI   +I+E ++   + K+ +   +L+ 
Sbjct: 1054 AW-----RIGQNKPVFVYKLITNKSIEEKIIALQQNKAELAHSILST 1095


>gi|326923617|ref|XP_003208031.1| PREDICTED: lymphoid-specific helicase-like [Meleagris gallopavo]
          Length = 871

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 12/94 (12%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGF 161
           N+ ++ L      + G G+NL     ++++ S W    DL + Q    RIG T       
Sbjct: 695 NDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDL-QAQDRCHRIGQT------- 746

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 747 -KPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 779


>gi|298385406|ref|ZP_06994964.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
 gi|298261547|gb|EFI04413.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
          Length = 502

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCGHGL 123
           +IV    +  +  LQK FP+  T+      I +        N   + L+     + G GL
Sbjct: 352 LIVFCSLHEIVDELQKVFPKAVTVTGRDSAINKQASVDAFQNNPNVQLIICSIKAAGVGL 411

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L    N+  F  L W   +  Q  +R       + G K  V  YYL+ + TID  +   
Sbjct: 412 TLTASSNV-AFIELAWTYADCCQCEDR-----AHRIGQKDNVTCYYLLGRGTIDHTIYSL 465

Query: 184 LRTKSTIQDLLLNA 197
           +  K +I   ++N+
Sbjct: 466 IHRKKSIASEIMNS 479


>gi|55820334|ref|YP_138776.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736319|gb|AAV59961.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 1031

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G          + G GLNL  G + ++   LWW+       +E   ++R  + G K+
Sbjct: 923  FNQGSRDAFLISLKAGGVGLNLT-GADTVILIDLWWN-----PAVEMQAISRAHRIGQKQ 976

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 977  NVEVFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|291398984|ref|XP_002715711.1| PREDICTED: RAD54-like protein [Oryctolagus cuniculus]
          Length = 755

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 585 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 638

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 639 IFQRQSHKKALSSCVVD 655


>gi|118092730|ref|XP_421626.2| PREDICTED: similar to proliferation-associated SNF2-like protein
           [Gallus gallus]
          Length = 822

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 12/94 (12%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGF 161
           N+ ++ L      + G G+NL     ++++ S W    DL + Q    RIG T       
Sbjct: 646 NDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDL-QAQDRCHRIGQT------- 697

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 698 -KPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 730


>gi|224090059|ref|XP_002308925.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222854901|gb|EEE92448.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1483

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++ + S W    + Q M       R  + G  + V VY LI + T++E 
Sbjct: 1240 GLGINLTAADTVIFYESDWNPTLDLQAM------DRAHRLGQTKDVTVYRLICKETVEEK 1293

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +LQR   K T+Q L++  
Sbjct: 1294 ILQRASQKHTVQQLVMTG 1311


>gi|23099744|ref|NP_693210.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22777974|dbj|BAC14245.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1051

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   +      + G GLNL  G + ++ + +WW+    +Q I+R       + G + 
Sbjct: 941  FNQGNREVCLISLKAGGTGLNL-VGADTVILYDVWWNPAVEEQAIDR-----AHRIGQQS 994

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  L+++ TI+E + +  R K  + + L+N 
Sbjct: 995  EVTVIRLLSEGTIEEKMYELQRKKRELMNYLVNG 1028


>gi|325190696|emb|CCA25192.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 835

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE-EHQQMIERIGVTRQRQAGFKR 163
           ++ ++ +L     +   G+NL +  N LV F + W+   +HQ M       R  + G  +
Sbjct: 678 SDNRVKVLLVSTRAGAEGINL-HAANRLVLFDVSWNPSYDHQSM------CRSHRLGQSK 730

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V VY L++  T++ ++ ++ R K+++   L++  K
Sbjct: 731 TVHVYRLVSTGTMERMIYEQQRKKTSLSMALVDRSK 766


>gi|226313275|ref|YP_002773169.1| hypothetical protein BBR47_36880 [Brevibacillus brevis NBRC 100599]
 gi|226096223|dbj|BAH44665.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 1090

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLN+  G + ++ + LWW+    QQ        R  + G K 
Sbjct: 984  FNEGERDLFLMSLKAGGTGLNVT-GADTVILYDLWWNPAVEQQ-----AADRAHRIGQKN 1037

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A+ T++E
Sbjct: 1038 VVQVIRLVAEGTVEE 1052


>gi|188587846|ref|YP_001921061.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|188498127|gb|ACD51263.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
          Length = 1086

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N+G+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 975  VDDFNDGENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1029 QENTVEVIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|195539537|ref|NP_001124238.1| DNA repair and recombination protein RAD54-like [Bos taurus]
 gi|119935983|gb|ABM06051.1| RAD54-like protein [Bos taurus]
 gi|296488837|gb|DAA30950.1| RAD54-like [Bos taurus]
          Length = 749

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 578 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 631

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 632 IFQRQSHKKALSSCVVD 648


>gi|51316190|sp|O12944|RAD54_CHICK RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Putative recombination factor GdRad54;
           AltName: Full=RAD54 homolog
 gi|1905887|gb|AAB54115.1| putative recombination factor GdRad54 [Gallus gallus]
          Length = 733

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 566 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 619

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 620 IFQRQTHKKALSSCVVD 636


>gi|187934555|ref|YP_001886021.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187722708|gb|ACD23929.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 1086

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N+G+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 975  VDDFNDGENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  V V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1029 QENTVEVIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|258568006|ref|XP_002584747.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
 gi|237906193|gb|EEP80594.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
          Length = 1534

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  IA  +I+E 
Sbjct: 502 GCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGSIEEK 555

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   ++++
Sbjct: 556 IFQRQSHKQLLSSCVVDS 573


>gi|108762463|ref|YP_629793.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108466343|gb|ABF91528.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1208

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ + EG +PL      + G GLNL      ++    WW+       +E     R  + G
Sbjct: 1085 VRAFQEGDVPLFLISLKAGGFGLNLT-AATTVIHLDPWWN-----PAVEDQASDRAHRIG 1138

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             +R V VY L+ + TI+E +L
Sbjct: 1139 QERPVTVYRLVTRGTIEEQML 1159


>gi|116627171|ref|YP_819790.1| SNF2 family DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116100448|gb|ABJ65594.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus LMD-9]
          Length = 1031

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G          + G GLNL  G + ++   LWW+       +E   ++R  + G K+
Sbjct: 923  FNQGSRDAFLISLKAGGVGLNLT-GADTVILIDLWWN-----PAVEMQAISRAHRIGQKQ 976

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 977  NVEVFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|312277649|gb|ADQ62306.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus ND03]
          Length = 1031

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G          + G GLNL  G + ++   LWW+       +E   ++R  + G K+
Sbjct: 923  FNQGSRDAFLISLKAGGVGLNLT-GADTVILIDLWWN-----PAVEMQAISRAHRIGQKQ 976

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 977  NVEVFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|296207850|ref|XP_002750833.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Callithrix jacchus]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 576 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 629

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 630 IFQRQSHKKALSSCVVD 646


>gi|55822225|ref|YP_140666.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738210|gb|AAV61851.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 1031

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G          + G GLNL  G + ++   LWW+       +E   ++R  + G K+
Sbjct: 923  FNQGSRDAFLISLKAGGVGLNLT-GADTVILIDLWWN-----PAVEMQAISRAHRIGQKQ 976

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 977  NVEVFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|327271091|ref|XP_003220321.1| PREDICTED: DNA repair and recombination protein RAD54-like [Anolis
           carolinensis]
          Length = 906

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 739 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEK 792

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 793 IFQRQTHKKALSSCVVD 809


>gi|299751451|ref|XP_001830276.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
 gi|298409380|gb|EAU91423.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
          Length = 1032

 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    ++ +    WW     Q+ IE   V R  + G K+ V VY LIA+NT++  VL
Sbjct: 921 GLNLTVANHVYLM-DPWW-----QEGIESQAVDRVNRIGQKKPVHVYQLIAENTVESKVL 974

Query: 182 Q-RLRTKSTIQDLLLNALKKET 202
           + + R K  ++        +ET
Sbjct: 975 EIQDRKKQLVKQAFSGIKSRET 996


>gi|242021397|ref|XP_002431131.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516380|gb|EEB18393.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 745

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T+ K    ++++N  E K  +      + G GLNL  G N LV F   W+     Q + R
Sbjct: 549 TIKKRGKVVEKFNDPESKDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMAR 607

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G K+  F+Y L++  TI+E + QR   K  +   +++
Sbjct: 608 VW-----RDGQKKPCFIYRLLSTGTIEEKIFQRQAHKKALSSTVVD 648


>gi|178056748|ref|NP_001116655.1| DNA repair and recombination protein RAD54-like [Sus scrofa]
 gi|168084900|dbj|BAG09488.1| DNA repair protein RAD54 [Sus scrofa]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|94264348|ref|ZP_01288140.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93455242|gb|EAT05455.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 1285

 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++  G   L      + G GLNL  G + ++    WW+    QQ  +R       + G
Sbjct: 1178 VEDFQRGGKDLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQQASDR-----AHRIG 1231

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V VY LI  NTI+E +L   + K  +   LL+ 
Sbjct: 1232 QDRPVTVYRLITSNTIEEKILSLHQRKRNLAGDLLDG 1268


>gi|188996818|ref|YP_001931069.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931885|gb|ACD66515.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 559

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL L    + ++FF L W+  +  Q  +R+      + G K  V +Y  I QNT++
Sbjct: 462 AAGEGLTLT-SSSYVIFFDLHWNPAKMWQAEDRV-----HRIGQKNKVNIYTFITQNTVE 515

Query: 178 ELVLQRLRTKSTI 190
           E ++Q+L  K ++
Sbjct: 516 EKIMQKLEEKRSM 528


>gi|216548186|ref|NP_003570.2| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|216548193|ref|NP_001136020.1| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|51316508|sp|Q92698|RAD54_HUMAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=hHR54; Short=hRAD54
 gi|47777671|gb|AAT38113.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|56204069|emb|CAI22117.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111307699|gb|AAI21061.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111309424|gb|AAI21060.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|119627335|gb|EAX06930.1| RAD54-like (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|224541793|ref|ZP_03682332.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525290|gb|EEF94395.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1067

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 22/153 (14%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL--- 94
            + +D+ KH       K++A   II+  K N   IIV   F S L  L K   + +T    
Sbjct: 888  IVFDDVKH----KSSKMEACLNIIQTYKDNNKKIIVFSSFKSLLNLLAKELDKSKTSYYM 943

Query: 95   -------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +K    +  +      +      + G GLNL     + V F  WW++    Q 
Sbjct: 944  LTGDTEKEKRKGLVDAYQNDDTTVFLISLKAGGTGLNLTAAEGV-VHFDPWWNMSAQNQ- 1001

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                   R  + G K  VFVY LI  ++I+E +
Sbjct: 1002 ----ATDRAYRIGQKNKVFVYKLIMADSIEEKI 1030


>gi|328352490|emb|CCA38889.1| chromodomain-helicase-DNA-binding protein 1 [Pichia pastoris CBS
           7435]
          Length = 1387

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 745 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 798

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 799 EEVLERARKKMILE 812


>gi|281415208|ref|ZP_06246950.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Micrococcus
           luteus NCTC 2665]
          Length = 630

 Score = 39.7 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D   ++ A+  G T  +    I+ + EG+ P+      + G GL L     + +    WW
Sbjct: 494 DHLEIEHAYLDGSTRGRAD-VIRGFREGEAPVFLISLKAGGFGLTLTEADYVFLM-DPWW 551

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +     Q ++R       + G +R V VY L+++ TI+E VL+
Sbjct: 552 NPAAEAQAVDR-----AHRIGQERTVMVYRLVSEGTIEEKVLE 589


>gi|254567734|ref|XP_002490977.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
 gi|238030774|emb|CAY68697.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
          Length = 1387

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++T++
Sbjct: 745 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFVSKDTVE 798

Query: 178 ELVLQRLRTKSTIQ 191
           E VL+R R K  ++
Sbjct: 799 EEVLERARKKMILE 812


>gi|158258659|dbj|BAF85300.1| unnamed protein product [Homo sapiens]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|150017499|ref|YP_001309753.1| non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149903964|gb|ABR34797.1| Non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1085

 Score = 39.7 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+N G+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 972  VDEFNNGENTVFLVSLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRIG 1025

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             K  V V  LIAQ TI+E +++   +K  + + +L
Sbjct: 1026 QKNVVEVIKLIAQGTIEEKIVELQDSKRELINKIL 1060


>gi|1495483|emb|CAA66379.1| RAD54 [Homo sapiens]
          Length = 747

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|329903743|ref|ZP_08273604.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548223|gb|EGF32923.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 824

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + E ++P+L     + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 713 VAAFQERQVPILLISLKAGGVGLNLT-AADTVIHLDPWWN-----PAVEEQATARAHRIG 766

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + V VY LI + +I+E +L     K+ + D
Sbjct: 767 QTQTVLVYKLIVEGSIEERILALQARKAALAD 798


>gi|299822681|ref|ZP_07054567.1| Snf2 family helicase [Listeria grayi DSM 20601]
 gi|299816210|gb|EFI83448.1| Snf2 family helicase [Listeria grayi DSM 20601]
          Length = 1063

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT-IQEWNEGKIPLLFA 114
            + N   +++   F S L  +Q           +  G+T  K+    +  +NEG   +   
Sbjct: 904  RENGKRMLIFSQFTSMLGIIQSELKKIGMEYFYMDGQTPSKERVNLVNAFNEGGKDIFLI 963

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL     + + + LWW+       +E    +R  + G K  V V  ++A+ 
Sbjct: 964  SLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQAASRAHRIGQKNVVQVIRMVAKG 1017

Query: 175  TIDELVLQRLRTKSTIQD 192
            TI+E +    + K  + D
Sbjct: 1018 TIEERIFDLQKKKQALID 1035


>gi|218960404|ref|YP_001740179.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729061|emb|CAO79972.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1065

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 59   LEVIIEKANAA-PIIVAYHFNSDLARLQKA---------FPQGRTLDK-DPCTIQEWNEG 107
            LE++ E  NA   +++   F   L+ ++K          +  G+T D+  P    E N  
Sbjct: 902  LELVTEATNAGHKVLIFSQFVQMLSIIRKVLEANSLPYCYLDGQTKDRVTPIKSFETNP- 960

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I L      + G GLNL    + ++ +  WW+      M+E   + R  + G    V V
Sbjct: 961  EIKLFLISLKAGGTGLNLT-AADTVILYDPWWN-----PMVENQAIDRTHRIGQTHKVQV 1014

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDL-------LLNALKKETI 203
            + LI + T++E +LQ  + K  + +        +L A+ KE I
Sbjct: 1015 FRLITKGTVEEKILQLQQNKRELFETVIEGGQNVLKAMTKEDI 1057


>gi|158334343|ref|YP_001515515.1| SNF2 family helicase putative [Acaryochloris marina MBIC11017]
 gi|158304584|gb|ABW26201.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
          Length = 1407

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A+NTI+E 
Sbjct: 1317 GTGLNL-TAADYVIHMDPWWN-----PAVEDQASDRAHRIGQRRPVTIYRLVAKNTIEEK 1370

Query: 180  VLQRLRTKSTIQDLLLNA 197
            ++   R K  + D LL  
Sbjct: 1371 IVDLHRHKRDLADSLLEG 1388


>gi|296418213|ref|XP_002838736.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634697|emb|CAZ82927.1| unnamed protein product [Tuber melanosporum]
          Length = 1100

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               + +N G+  +      + G GLNL     I++F   W  + E Q       V R  +
Sbjct: 966  SATKSFNSGRSDVFLVSTEAGGLGLNLPGANRIIIFDFKWSPMWEEQ------AVGRAYR 1019

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G K+ VFVY   A  T ++L   ++  KS +Q  +++
Sbjct: 1020 MGQKKHVFVYRFHAVGTFEDLKRNKILFKSQLQSRVVD 1057


>gi|330916188|ref|XP_003297327.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
 gi|311330071|gb|EFQ94584.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
          Length = 1580

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G ++ V VY L++++TI+E 
Sbjct: 843 GLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQQKPVSVYRLVSKDTIEEE 896

Query: 180 VLQRLRTKSTIQ 191
           +L+R R K  ++
Sbjct: 897 ILERARNKRMLE 908


>gi|189189128|ref|XP_001930903.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972509|gb|EDU40008.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1570

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G ++ V VY L++++TI+E 
Sbjct: 833 GLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQQKPVSVYRLVSKDTIEEE 886

Query: 180 VLQRLRTKSTIQ 191
           +L+R R K  ++
Sbjct: 887 ILERARNKRMLE 898


>gi|115910510|ref|XP_795650.2| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
 gi|115960830|ref|XP_001193156.1| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
          Length = 1571

 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY LI + TI+
Sbjct: 1253 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICKGTIE 1304

Query: 178  ELVLQRLRTKSTIQ 191
            E +L+R R KS ++
Sbjct: 1305 EHILERAREKSEVR 1318


>gi|118722509|gb|ABL09965.1| helicase [Streptomyces echinatus]
          Length = 1011

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 72  IVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
           ++A H + +L   +  F  G T     D+     QE ++   PLL     + G GLNL  
Sbjct: 863 LLARHLSGELGLARVPFLHGGTPTEHRDRMVRAFQE-DDDAPPLLLISLKAGGFGLNLTR 921

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +++  +  WW+       +E     R  + G  + V V+ L+  +T +E +   L++K
Sbjct: 922 ASHVM-HYDRWWN-----PAVEDQATDRAHRIGQTKTVLVHKLVTADTFEERIDALLQSK 975

Query: 188 STIQDLLLNA 197
            ++ D ++ A
Sbjct: 976 RSLADAVVGA 985


>gi|294674417|ref|YP_003575033.1| SNF2 helicase family protein [Prevotella ruminicola 23]
 gi|294472802|gb|ADE82191.1| SNF2 helicase family protein [Prevotella ruminicola 23]
          Length = 713

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T ++D    Q  ++  I +      + G GLNL     + +    WW+       +E 
Sbjct: 599 GDTRNRDIPVRQFQSDSSITVFLISLKAGGFGLNLTSADRV-ILLDDWWN-----PAVED 652

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + R  + G K  V V  L+ ++T++E +LQ    K    DL  N  +K T+
Sbjct: 653 QAMARAHRIGQKNNVLVLRLVCKDTVEEKILQLQAQKRQTVDLFNNTSEKLTL 705


>gi|224136438|ref|XP_002326860.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222835175|gb|EEE73610.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 576

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   +C  G+NL  G + +V   + W+       +ER  ++R  + G ++ V++Y+L
Sbjct: 442 VLLASTRACSEGINL-VGASRVVLLDVLWN-----PSVERQAISRAYRLGQEKVVYIYHL 495

Query: 171 IAQNTIDE 178
           I   T++E
Sbjct: 496 ITSGTMEE 503


>gi|50290001|ref|XP_447432.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526742|emb|CAG60369.1| unnamed protein product [Candida glabrata]
          Length = 942

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 766 EGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDC 819

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 820 FIYRFISTGTIEEKIYQRQSMKMSLSSCVVDA 851


>gi|323454465|gb|EGB10335.1| hypothetical protein AURANDRAFT_52962 [Aureococcus anophagefferens]
          Length = 258

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDE 178
           G G+NL  G N +V F + W+        +R  + R  + G KR VFVY L+A + T++ 
Sbjct: 93  GEGINLT-GANRVVLFDVCWN-----PCFDRQAMCRAHRFGQKRPVFVYRLVAPRGTMEA 146

Query: 179 LVLQRLRTK 187
            VL++ R K
Sbjct: 147 KVLRQQRRK 155


>gi|290982366|ref|XP_002673901.1| predicted protein [Naegleria gruberi]
 gi|284087488|gb|EFC41157.1| predicted protein [Naegleria gruberi]
          Length = 873

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+     W+    +Q + R+      + G K++VF+Y +I   TI+E 
Sbjct: 683 GCGLNL-IGANRLIMIDPDWNPSNDEQAMARVW-----RDGQKKSVFIYRMIGCGTIEEK 736

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K+ +    L+
Sbjct: 737 IFQRQIVKTGLSKSTLD 753


>gi|255082185|ref|XP_002508311.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523587|gb|ACO69569.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1126

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  GGN LV F   W+    +Q        R  + G K+  ++Y  +A  +I+E 
Sbjct: 620 GCGINL-IGGNRLVLFDPDWNPANDKQ-----AAARCWRDGQKKKCYLYRFLATGSIEEK 673

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K ++Q+++
Sbjct: 674 VFQRQLSKESLQNVV 688


>gi|281351942|gb|EFB27526.1| hypothetical protein PANDA_008144 [Ailuropoda melanoleuca]
          Length = 716

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 547 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 600

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 601 IFQRQSHKKALSSCVVD 617


>gi|225848989|ref|YP_002729153.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644628|gb|ACN99678.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 561

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GL L    + ++FF L W+  +  Q  +R+      + G  +AV +Y  + +NT+
Sbjct: 462 TAAGEGLTLT-SSSYIIFFDLHWNPAKVWQAEDRV-----HRIGQTKAVNIYNFVTKNTV 515

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E ++Q+L  K +I + L++
Sbjct: 516 EEKIIQKLEEKKSIINNLID 535


>gi|298528450|ref|ZP_07015854.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512102|gb|EFI36004.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1068

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G  + 
Sbjct: 964  NNPDIPVFLISLKAGGTGLNLT-AADYVIHYDPWWN-----PAVENQATDRTHRIGQTKQ 1017

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
            VF Y +I +NT++E +L+    K  + + ++   NA K  T
Sbjct: 1018 VFSYKMICENTVEEKILKLQEQKKGVAEAVIPGQNAWKSLT 1058


>gi|260907213|ref|ZP_05915535.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Brevibacterium
            linens BL2]
          Length = 1132

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I ++  G+ P+      + G GL L     + +    WW+       +E   V R  + G
Sbjct: 1023 IDDFRAGEAPIFLISLKAGGFGLTLTEADYVFLL-DPWWN-----PAVEAQAVDRAHRIG 1076

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V VY ++++ TI+E VL     K+ + D L+N
Sbjct: 1077 QTKNVMVYRMVSEKTIEEKVLALQERKAQLFDSLVN 1112


>gi|224058089|ref|XP_002191829.1| PREDICTED: RAD54-like (S. cerevisiae) [Taeniopygia guttata]
          Length = 757

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 590 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKMCYIYRLLSTGTIEEK 643

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 644 IFQRQTHKKALSSCVVD 660


>gi|213404262|ref|XP_002172903.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000950|gb|EEB06610.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1356

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++TI+E 
Sbjct: 767 GLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVMVYRFLSKDTIEED 820

Query: 180 VLQRLRTKSTIQ 191
           VL+R R K  ++
Sbjct: 821 VLERARRKMILE 832


>gi|260945000|ref|XP_002616798.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
 gi|238850447|gb|EEQ39911.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
          Length = 1259

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K+ V VY  ++++T++
Sbjct: 597 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKKHVSVYRFVSKDTVE 650

Query: 178 ELVLQRLRTKSTIQ 191
           E +L+R R K  ++
Sbjct: 651 EEILERARKKMILE 664


>gi|210075955|ref|XP_504989.2| YALI0F04356p [Yarrowia lipolytica]
 gi|199424920|emb|CAG77796.2| YALI0F04356p [Yarrowia lipolytica]
          Length = 1242

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 101  IQEWNEGKIPLLF-AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +NE   P +F     + G G+NL    ++++F S W   ++ Q       + R  + 
Sbjct: 1070 IDAFNEESGPSIFLITTRAGGTGINLTAADSVVIFDSDWNPQQDKQ------AIDRSHRI 1123

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+   +Y LI+ NT++E++++    K  + ++++ A
Sbjct: 1124 GQKKPCVIYRLISTNTMEEMLVRVASDKKRLDEMVIQA 1161


>gi|194207506|ref|XP_001915622.1| PREDICTED: similar to RAD54-like protein [Equus caballus]
          Length = 755

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|110801800|ref|YP_698913.1| Snf2/Rad54 family helicase [Clostridium perfringens SM101]
 gi|110682301|gb|ABG85671.1| helicase, SNF2/RAD54 family [Clostridium perfringens SM101]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|258514714|ref|YP_003190936.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778419|gb|ACV62313.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 891

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 28/146 (19%)

Query: 65  KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPC--TIQEWNEGKIPLLF 113
           +AN   ++V   F S L+ ++K          +  G T+ +     + +  +EG   + F
Sbjct: 739 QANHEKVVVFSQFTSMLSIMKKWAEEQGYATFYLDGATMKRQEVVDSFERSDEG---VFF 795

Query: 114 AHPASCGHGLNL---QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
               + G GLN+   QY     + +  WW+     Q  +RI      + G K+ VFVY+L
Sbjct: 796 ISLKAGGVGLNIVSCQYA----IIYDPWWNPAVENQASDRI-----YRIGQKKNVFVYHL 846

Query: 171 IAQNTIDELVLQRLRT-KSTIQDLLL 195
           +  N+I+E + ++L+T K  I D LL
Sbjct: 847 VTANSIEEKI-EKLKTEKREIADNLL 871


>gi|297192312|ref|ZP_06909710.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719707|gb|EDY63615.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 44/208 (21%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANG-------AVYYDEEKHWKEVHDEKIKALEVI 62
           EL   LQ E  E F++A        +A+G       A Y   EK  K    E+++ L V 
Sbjct: 472 ELPSLLQVEEWEEFSAADAEAYREAVASGNFMAMRRAAYARPEKSAKL---ERLREL-VD 527

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP------------ 110
              AN   ++V  +F   LA + +A  +G      P +      G +P            
Sbjct: 528 DAAANGLKVVVFSYFRDVLAAVGEALDEGVF---GPVS------GSVPAARRQQLVDEFT 578

Query: 111 ------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L A   + G GLNLQ    +++         EHQ       V R  + G  RA
Sbjct: 579 AAPGHAVLLAQIEAGGVGLNLQAASVVIICEPQVKPTMEHQ------AVARAHRMGQVRA 632

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V V+ L+A N++D+ +L  L +KS + D
Sbjct: 633 VQVHRLLATNSVDQRMLDILESKSRLFD 660


>gi|168217982|ref|ZP_02643607.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
 gi|182379962|gb|EDT77441.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|168213595|ref|ZP_02639220.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
 gi|170714879|gb|EDT27061.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|18310607|ref|NP_562541.1| helicase, SNF2/RAD54 family [Clostridium perfringens str. 13]
 gi|18145288|dbj|BAB81331.1| SWI/SNF family helicase [Clostridium perfringens str. 13]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|307177261|gb|EFN66439.1| DNA repair and recombination protein RAD54B [Camponotus floridanus]
          Length = 845

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +  KI LL A     G GLNL  G + LV F   W+     Q + RI      + G K+ 
Sbjct: 661 DNSKILLLSAKAG--GVGLNLP-GASRLVLFDSDWNPASDVQAMARIW-----RDGQKKN 712

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V++Y L+   TI+E + QR  +K+++ + +++
Sbjct: 713 VYIYRLLTTGTIEEKIYQRQISKASLSESVVD 744


>gi|168207158|ref|ZP_02633163.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
 gi|170661452|gb|EDT14135.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|182416600|ref|ZP_02948017.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237669036|ref|ZP_04529020.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182379558|gb|EDT77042.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237657384|gb|EEP54940.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1077

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+N+G   +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 966  VNEFNDGNKNIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRLG 1019

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K  V V  LIA  TI+E ++    +K  + D +L+
Sbjct: 1020 QKNVVEVIKLIASGTIEEKIIDLQNSKRELIDKVLS 1055


>gi|110800752|ref|YP_696312.1| Snf2/Rad54 family helicase [Clostridium perfringens ATCC 13124]
 gi|110675399|gb|ABG84386.1| helicase, SNF2/RAD54 family [Clostridium perfringens ATCC 13124]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|190347873|gb|EDK40225.2| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++TI+
Sbjct: 721 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVSVYRFVSKDTIE 774

Query: 178 ELVLQRLRTKSTIQ 191
           E +L+R R K  ++
Sbjct: 775 EEILERARKKMILE 788


>gi|67969780|dbj|BAE01238.1| unnamed protein product [Macaca fascicularis]
          Length = 489

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 319 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 372

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 373 IFQRQSHKKALSSCVVD 389


>gi|312086053|ref|XP_003144925.1| hypothetical protein LOAG_09349 [Loa loa]
 gi|307759908|gb|EFO19142.1| hypothetical protein LOAG_09349 [Loa loa]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A+ G GLNL  G + ++ F   W+     Q++ RI     RQ G K    +Y LI   T+
Sbjct: 4   ATGGLGLNL-VGASRMILFDSDWNPAVDMQVMARI----WRQ-GQKSPCHIYRLITGGTV 57

Query: 177 DELVLQRLRTKSTIQDLL 194
           DE +LQR   KS++  ++
Sbjct: 58  DEKILQRQIKKSSLNTVV 75


>gi|303389620|ref|XP_003073042.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302186|gb|ADM11682.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 556

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + QE  E K  LL     +C  GL L   G  +VF  L+W+     Q  +RI      + 
Sbjct: 442 SFQENEEIKTALL--SITACSTGLTLT-AGRAVVFAELYWNPGVLLQAEDRI-----HRI 493

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G K +V + YL+A+ TIDE V  +L +K  + + L
Sbjct: 494 GQKNSVDIIYLVARGTIDEYVWPKLLSKLNVLESL 528


>gi|330840007|ref|YP_004414587.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
 gi|329747771|gb|AEC01128.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
          Length = 1091

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 18/153 (11%)

Query: 55   KIKALEVIIEKANAAP--IIVAYHFNS---------DLARLQKAFPQGRTLDKDPCT-IQ 102
            K+  LE ++  A AA   I++   F +         D+  L  A+  G T   +    ++
Sbjct: 925  KLDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVR 984

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N G  PL      + G GLNL  G ++++ +  WW+       +E     R  + G K
Sbjct: 985  DFNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWN-----PAVEDQATDRAYRIGQK 1038

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              V V   I ++TI+E + +    K  + D ++
Sbjct: 1039 NNVQVLKFITKDTIEEKIYELQEKKKALIDQMI 1071


>gi|156399887|ref|XP_001638732.1| predicted protein [Nematostella vectensis]
 gi|156225855|gb|EDO46669.1| predicted protein [Nematostella vectensis]
          Length = 911

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G GLNL     ++++ S W    DL+  Q    RIG T+         + VY L+  NT+
Sbjct: 761 GLGLNLSAADTVIIYDSDWNPQSDLQ-AQDRCHRIGQTK--------PILVYRLVTSNTV 811

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D+ +++R  +K  ++ +++
Sbjct: 812 DQKIVERAASKRKLEKMVI 830


>gi|224543399|ref|ZP_03683938.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523686|gb|EEF92791.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
          Length = 856

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P +     + G GLNL    N ++ F  WW+       +E     R  + G  + VFV+
Sbjct: 752 VPYIVLSLKAAGTGLNLT-AANHVIHFDRWWN-----PAVENQASDRAYRIGQTKEVFVH 805

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L++  TI+E + Q + +K  + + +L
Sbjct: 806 KLVSNGTIEEKINQIIESKQELAESIL 832


>gi|309388673|gb|ADO76553.1| SNF2-related protein [Halanaerobium praevalens DSM 2228]
          Length = 1082

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 101  IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+N   ++ +      + G GLNL    +++V    WW+      M+ER    R  + 
Sbjct: 967  VKEFNNNCEVKIFLISLKAGGVGLNLT-AADMVVHVDPWWN-----PMVERQATDRAHRL 1020

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G +  V VY LI + T++E +L+    K   QDL  N ++
Sbjct: 1021 GQQNRVMVYKLITRGTVEEKMLKLQERK---QDLFNNVIE 1057


>gi|119897130|ref|YP_932343.1| SWI/SNF family helicase [Azoarcus sp. BH72]
 gi|119669543|emb|CAL93456.1| SWI/SNF family helicase [Azoarcus sp. BH72]
          Length = 1098

 Score = 39.3 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++ +G+ P+      + G GLNL    + ++ +  WW+     Q  +     R  + G
Sbjct: 985  VEDFQKGRAPVFLISLKAGGVGLNLT-TADTVIHYDPWWNPAAENQATD-----RAHRIG 1038

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKK 200
              + VFV+ LI   +I+E +L     K+ +   +L    NAL K
Sbjct: 1039 QDKPVFVFKLICAGSIEERILSLQDKKAALAASVLSEDANALAK 1082


>gi|328711442|ref|XP_001943462.2| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Acyrthosiphon pisum]
          Length = 842

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLNL    N++++ S W    + Q M       R  + G K+ V +Y L
Sbjct: 662 VLLLSAKAGGVGLNLVGASNLILYDSDWNPASDQQAM------ARIWRDGQKKNVHIYRL 715

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +   TI+E + QR  +K+ + + + N 
Sbjct: 716 LTSGTIEEKIFQRQISKTGLSEAITNP 742


>gi|308511103|ref|XP_003117734.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
 gi|308238380|gb|EFO82332.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
          Length = 3156

 Score = 39.3 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNLQ    +++F S W     HQ M  +    R  + G K  V V+ LI  N+++E 
Sbjct: 1964 GLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKAEVRVFRLITSNSVEEK 2017

Query: 180  VLQRLRTKSTIQDLLLNALK 199
            +L   R K  + + ++ A K
Sbjct: 2018 ILASARFKLNVDEKVIQAGK 2037


>gi|308175364|ref|YP_003922069.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307608228|emb|CBI44599.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 924

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + + + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VERFQKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 863 QERFVHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|168209303|ref|ZP_02634928.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
 gi|170712526|gb|EDT24708.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
          Length = 1084

 Score = 39.3 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|66362430|ref|XP_628179.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
 gi|46227356|gb|EAK88291.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
          Length = 2055

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++++ S W    + Q         R  + G K+ V +Y L+ +++I+E 
Sbjct: 952  GLGINLTTADTVIIYDSDWNPQNDLQ------AEARAHRIGQKKQVQIYRLVTKDSIEEN 1005

Query: 180  VLQRLRTKSTIQDLLLNAL 198
            +L+R +TK  +  L++  L
Sbjct: 1006 ILERAKTKMVLDTLVVQGL 1024


>gi|328555338|gb|AEB25830.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens TA208]
 gi|328913706|gb|AEB65302.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens LL3]
          Length = 924

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + + + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VERFQKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 863 QERFVHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|169342801|ref|ZP_02863835.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
 gi|169299058|gb|EDS81130.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
          Length = 1084

 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRIG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|146415248|ref|XP_001483594.1| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K  V VY  ++++TI+
Sbjct: 721 AGGLGINLMTADTVIIFDSDWNPQADLQAM------ARAHRIGQKNHVSVYRFVSKDTIE 774

Query: 178 ELVLQRLRTKSTIQ 191
           E +L+R R K  ++
Sbjct: 775 EEILERARKKMILE 788


>gi|260888136|ref|ZP_05899399.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
 gi|260862165|gb|EEX76665.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
          Length = 1098

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 18/153 (11%)

Query: 55   KIKALEVIIEKANAAP--IIVAYHFNS---------DLARLQKAFPQGRTLDKDPCT-IQ 102
            K+  LE ++  A AA   I++   F +         D+  L  A+  G T   +    ++
Sbjct: 932  KLDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVR 991

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N G  PL      + G GLNL  G ++++ +  WW+       +E     R  + G K
Sbjct: 992  DFNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWN-----PAVEDQATDRAYRIGQK 1045

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              V V   I ++TI+E + +    K  + D ++
Sbjct: 1046 NNVQVLKFITKDTIEEKIYELQEKKKALIDQMI 1078


>gi|260941370|ref|XP_002614851.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
 gi|238851274|gb|EEQ40738.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
          Length = 885

 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            N    RL  + P  +  DK      +    KI LL A     G GLNL  G + L+ F 
Sbjct: 669 LNLQYCRLDGSTP-AKVRDKLVLDFNKCPTHKIFLLSAKAG--GVGLNL-VGASRLILFD 724

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+     Q + R+      + G  + VF+Y L     IDE + QR   K+ + D+ L+
Sbjct: 725 NDWNPSVDLQAMARV-----HRYGQTKPVFIYRLFTTGAIDEKIFQRQLMKNNLSDMFLD 779


>gi|157128256|ref|XP_001661368.1| hypothetical protein AaeL_AAEL002341 [Aedes aegypti]
 gi|108882255|gb|EAT46480.1| conserved hypothetical protein [Aedes aegypti]
          Length = 851

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 26/153 (16%)

Query: 59  LEVIIEKANAAPIIVAY------------HFNSDLARLQKAFPQGRTLDKDPCTI-QEWN 105
           LE +I++   A I+  Y            H+N    RL      G T  +D C I   +N
Sbjct: 584 LETLIQRQEKAVIVSYYGKTLDMIMGLCEHYNYKYCRLD-----GSTPSQDRCKIVSSFN 638

Query: 106 E-GKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +F   A  G  GLNL  G + L+ +   W+     Q + RI      + G  R
Sbjct: 639 SPSSDTFIFLLSAKAGGIGLNLT-GASRLILYDNDWNPASDLQAMSRIW-----RDGQTR 692

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 693 NVFIYRLITAFSIEEKIYQRQISKTSLSGTVVD 725


>gi|239986923|ref|ZP_04707587.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 914

 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +   ++P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 801 VDRFQSAEVPVFLLSLKAAGTGLNLTRAAHV-VHFDRWWN-----PAVEEQATDRAYRIG 854

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +I + T+++ + + L +K  + D +L +
Sbjct: 855 QTQPVQVHRIITEGTVEDRIAELLESKRALADAVLGS 891


>gi|239940441|ref|ZP_04692378.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291443871|ref|ZP_06583261.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291346818|gb|EFE73722.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1006

 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +   ++P+      + G GLNL    ++ V F  WW+       +E     R  + G
Sbjct: 893 VDRFQSAEVPVFLLSLKAAGTGLNLTRAAHV-VHFDRWWN-----PAVEEQATDRAYRIG 946

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+ +I + T+++ + + L +K  + D +L +
Sbjct: 947 QTQPVQVHRIITEGTVEDRIAELLESKRALADAVLGS 983


>gi|17551114|ref|NP_508736.1| hypothetical protein C52B9.8 [Caenorhabditis elegans]
 gi|13775404|gb|AAK39219.1| Hypothetical protein C52B9.8 [Caenorhabditis elegans]
          Length = 1336

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNLQ    +++F S W     HQ M       R  + G K  V V+ L
Sbjct: 754 LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRAHRIGQKAEVRVFRL 807

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           I  N+++E +L   R K  + + ++ A K
Sbjct: 808 ITANSVEEKILAAARYKLNVDEKVIQAGK 836


>gi|308491646|ref|XP_003108014.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
 gi|308249961|gb|EFO93913.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
          Length = 1375

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            D  T+    + K  L      + G GLNLQ    +++F S W     HQ M       R 
Sbjct: 906  DLLTLYNAPDSKYFLFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRA 959

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 960  HRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1002


>gi|198437252|ref|XP_002124935.1| PREDICTED: similar to transcription termination factor, RNA
            polymerase II [Ciona intestinalis]
          Length = 1071

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L    + W+    +Q  +RI      + G K+ VFV+  I + T++E 
Sbjct: 980  GVGLNL-IGGNHLFLLDMHWNPALEKQAFDRI-----YRVGQKKEVFVHKFIMEETVEEQ 1033

Query: 180  VLQ 182
            +LQ
Sbjct: 1034 ILQ 1036


>gi|256080936|ref|XP_002576731.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
 gi|242318369|emb|CAZ32968.2| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
          Length = 832

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  ++Y LI+  TI+E 
Sbjct: 664 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKQCYIYRLISTGTIEEK 717

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K  +   +++
Sbjct: 718 MLQRQAHKKALSSCVVD 734


>gi|326670150|ref|XP_689596.5| PREDICTED: hypothetical protein LOC553504 [Danio rerio]
          Length = 1269

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 91  GRTLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T  KD   I +E+N  + + L      + G GLN   G N++V F   W+     Q I
Sbjct: 490 GNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQAI 548

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 549 DRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 590


>gi|238878261|gb|EEQ41899.1| DNA repair and recombination protein RAD54 [Candida albicans WO-1]
          Length = 848

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + ++N+   P  +      + G G+NL  G N LV     W+    QQ + R+      +
Sbjct: 665 VDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQQALARVW-----R 718

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 719 DGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 756


>gi|58263400|ref|XP_569110.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57223760|gb|AAW41803.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1277

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 21/149 (14%)

Query: 59   LEVIIEKANAAPIIVAYHFNS--DLARL---QKAFPQGRTL-----DKDPCTIQEWN--- 105
            ++ IIE+  +  IIV   F    DL  +   ++  P  + +     D+   TI+++N   
Sbjct: 1104 IDAIIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKDFNRPM 1163

Query: 106  -EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E K P        CG  GLNL    +++     W    E+Q       V R  + G  R
Sbjct: 1164 EEDKSPRCLLMSLKCGGVGLNLCIANHVICLDLAWNAATENQ------AVDRAHRIGQTR 1217

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1218 EVVVHRLVVENTIDQRLMELQQQKQALSD 1246


>gi|284040459|ref|YP_003390389.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283819752|gb|ADB41590.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1185

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    N ++ F LWW+       +E     R  + G  + V VY L+ Q T++
Sbjct: 1092 AGGTGLNLTQA-NHVIHFDLWWN-----PAVESQATDRAFRIGQTKNVMVYRLMNQGTLE 1145

Query: 178  ELVLQRLRTKSTIQDL 193
            E +   +R+K  + DL
Sbjct: 1146 EKIDAMIRSKRELADL 1161


>gi|296131142|ref|YP_003638392.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
 gi|296022957|gb|ADG76193.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
          Length = 1096

 Score = 38.9 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            A L   +  GRT  +    +  +  G  PL      + G GLNL    + +     WW+ 
Sbjct: 968  AGLAYEYLDGRTRRRGD-VVDRFRTGSAPLFLVSLRAGGFGLNLTEA-DYVYLLDPWWNP 1025

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               QQ ++R       + G  R V V  L+A  TI+E V+     K  + D +L
Sbjct: 1026 AVEQQAVDR-----THRIGQDRKVMVNRLVAAGTIEEKVMALAARKRAVFDAVL 1074


>gi|124481796|gb|AAI33116.1| LOC553504 protein [Danio rerio]
          Length = 1105

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 91  GRTLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T  KD   I +E+N  + + L      + G GLN   G N++V F   W+     Q I
Sbjct: 488 GNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQAI 546

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 547 DRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 588


>gi|61402625|gb|AAH91795.1| LOC553504 protein [Danio rerio]
          Length = 1069

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 91  GRTLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T  KD   I +E+N  + + L      + G GLN   G N++V F   W+     Q I
Sbjct: 488 GNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQAI 546

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 547 DRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 588


>gi|321468014|gb|EFX79001.1| hypothetical protein DAPPUDRAFT_319936 [Daphnia pulex]
          Length = 547

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 23/142 (16%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW---- 104
           V  + + AL++I E    NA+ +   ++ N D  R+  +    + L        EW    
Sbjct: 307 VFSQSLAALDLIEEFLANNASEVSKTWNLNKDYFRMDGSTKPEKRL--------EWGTAF 358

Query: 105 NEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           N+ K P          + G G+NL+ G N ++ F + W+    +Q      V R  + G 
Sbjct: 359 NDPKNPRARFFLTSTKAGGIGINLK-GANRVIIFDVSWNPSVDEQ-----SVFRAYRLGQ 412

Query: 162 KRAVFVYYLIAQNTIDELVLQR 183
            +  +VY  +AQ T++E++  R
Sbjct: 413 HKPCYVYRFVAQGTMEEIMYYR 434


>gi|302845062|ref|XP_002954070.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
 gi|300260569|gb|EFJ44787.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
          Length = 520

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    QQ   R+    QR     + VFVY  ++  +I+E 
Sbjct: 452 GCGLNL-IGANRLVLFDPDWNPANDQQAAARVWRDGQR-----KRVFVYRFLSTGSIEEK 505

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  ++ L+
Sbjct: 506 VYQRQLSKEGLKQLV 520


>gi|201066350|ref|NP_001128432.1| RAD54 like [Rattus norvegicus]
 gi|197246624|gb|AAI69034.1| Rad54l protein [Rattus norvegicus]
          Length = 748

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|68467321|ref|XP_722322.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
 gi|68467550|ref|XP_722208.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444164|gb|EAL03441.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444289|gb|EAL03565.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
          Length = 848

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + ++N+   P  +      + G G+NL  G N LV     W+    QQ + R+      +
Sbjct: 665 VDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQQALARVW-----R 718

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 719 DGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 756


>gi|149239498|ref|XP_001525625.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451118|gb|EDK45374.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 875

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV     W+    QQ + R+      + G K+  F+Y  I+  TI+E 
Sbjct: 713 GCGINL-IGANRLVLIDPDWNPASDQQALARVW-----RDGQKKDCFIYRFISTGTIEEK 766

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K ++   +++
Sbjct: 767 IFQRQSMKMSLSSCVVD 783


>gi|156052901|ref|XP_001592377.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980]
 gi|154704396|gb|EDO04135.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1505

 Score = 38.9 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G K+ V +Y L+++ T++E 
Sbjct: 826 GLGINLMTADTVVIFDSDWNPQADLQAM------ARAHRIGQKKPVSIYRLVSKETVEEE 879

Query: 180 VLQRLRTK-----STIQDLLLNALKKE 201
           +L+R R K      TIQ  + +  KKE
Sbjct: 880 ILERARNKLMLEFITIQRGVTDKEKKE 906


>gi|154687749|ref|YP_001422910.1| YwqA [Bacillus amyloliquefaciens FZB42]
 gi|154353600|gb|ABS75679.1| YwqA [Bacillus amyloliquefaciens FZB42]
          Length = 924

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + + + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VERFQKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 863 QERFVHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|330842982|ref|XP_003293445.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
 gi|325076230|gb|EGC30034.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
          Length = 1044

 Score = 38.9 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 22/170 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII--VAYHFNSDLARLQK 86
            + KC++L        +E   KE+H+ K K L +  +      I+  V   F     RL  
Sbjct: 868  SAKCIKL--------KEILQKEIHENKSKVL-IFSQMTKVLDILEDVLSIFGESFTRLDG 918

Query: 87   AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              P     D     I  +   K IP+      + G G+NL    N+++F+ L ++ +   
Sbjct: 919  QTPVNERQD----IIDHFTNSKDIPVFLLSTNAGGLGINLTCA-NVVIFYDLSFNPQ--- 970

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++R    R  + G +R V VY L+ +NT+D  +      K  + D +L
Sbjct: 971  --VDRQAEDRAHRLGQEREVIVYKLLTENTVDIDIFNSANEKKKLNDNIL 1018


>gi|126659998|ref|ZP_01731121.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618763|gb|EAZ89509.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 854

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + ++    WW+       +E     R  + G +R V VY L+A++TI+E 
Sbjct: 766 GTGLNLT-AADYVIHLDPWWN-----PAVEDQATDRAYRIGQQRPVTVYRLVAKDTIEEK 819

Query: 180 VLQRLRTKSTIQDLLLNA 197
           ++Q    K  + D LL+ 
Sbjct: 820 IVQLHHRKRDLADSLLSG 837


>gi|1495708|emb|CAA66380.1| RAD54 [Mus musculus]
          Length = 747

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|26353994|dbj|BAC40627.1| unnamed protein product [Mus musculus]
          Length = 747

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|170720849|ref|YP_001748537.1| non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
 gi|169758852|gb|ACA72168.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
          Length = 1108

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    +Q++ +G   +      + G GLNL    + ++ F  WW+     Q  +R
Sbjct: 983  GDTRDRR-TPVQQFQQGDSEVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPASENQATDR 1040

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFV+ LI + T++E + Q  + K+ +   LL+ 
Sbjct: 1041 A-----YRIGQDKPVFVFKLITRGTVEEKIQQLQQEKAALAASLLDG 1082


>gi|91974494|ref|YP_567153.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
 gi|91680950|gb|ABE37252.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
          Length = 924

 Score = 38.9 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E  I L+ A  A+C  GLNLQ  G  L+   L W+    +Q I RI    QR+       
Sbjct: 759 ERTIRLVVATDAAC-EGLNLQTLGT-LINVDLPWNPSRLEQRIGRIKRFGQRRERVDMLN 816

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            VY+   Q T+DE V Q+L ++
Sbjct: 817 LVYHGSQQLTVDEKVYQKLSSR 838


>gi|171906595|ref|NP_033041.3| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906597|ref|NP_001116430.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906599|ref|NP_001116431.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|51316197|sp|P70270|RAD54_MOUSE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=mHR54; Short=mRAD54
 gi|123244614|emb|CAM20670.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|123253898|emb|CAM22667.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|148698674|gb|EDL30621.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|20987234|gb|AAH21643.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 577 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 630

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 631 IFQRQSHKKALSSCVVD 647


>gi|170085783|ref|XP_001874115.1| RAD5-like protein [Laccaria bicolor S238N-H82]
 gi|164651667|gb|EDR15907.1| RAD5-like protein [Laccaria bicolor S238N-H82]
          Length = 1156

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+     Q I+R+      + G ++ V+V + I  NTI+  
Sbjct: 1067 GVGLNLT-AANHVFMMDCWWNAATENQAIDRV-----HRIGQEKTVYVTHFIVANTIESR 1120

Query: 180  VLQRLRTKSTI 190
            +LQ  + K+ I
Sbjct: 1121 ILQIQKRKTAI 1131


>gi|311069060|ref|YP_003973983.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
 gi|310869577|gb|ADP33052.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
          Length = 556

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK+ +L A  A  G G+NLQ+  NI + + L W+    +Q I RI      + G +R V 
Sbjct: 420 GKVQVLIATEAG-GEGINLQFCNNI-INYDLPWNPMRLEQRIGRI-----HRLGQERDVH 472

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           +Y +  ++T++E +L+ L  K
Sbjct: 473 IYNMATKHTVEEHILKLLYEK 493


>gi|194386250|dbj|BAG59689.1| unnamed protein product [Homo sapiens]
          Length = 567

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 397 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 450

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 451 IFQRQSHKKALSSCVVD 467


>gi|224071533|ref|XP_002303505.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840937|gb|EEE78484.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2327

 Score = 38.9 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1122 IARFNQDKSRFVFLLSTRSCGLGINLASADTVIIYDS---DFNPHSDIQ---AMNRAHRI 1175

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  R K  +  L +N
Sbjct: 1176 GQSKRLLVYRLVVRASVEERILQLARKKLVLDQLFVN 1212


>gi|307197496|gb|EFN78730.1| Transcription termination factor 2 [Harpegnathos saltator]
          Length = 935

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           P  I  +N+      +L     + G GLNL  G N L+ F + W+ +   Q  +RI    
Sbjct: 820 PAIIDSFNKSNSDPRILLLSLTAGGVGLNL-VGANHLLLFDIHWNPQLESQAQDRI---- 874

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELV 180
             + G K+ V++Y  I  NTI+E +
Sbjct: 875 -YRFGQKKDVYIYKFICSNTIEERI 898


>gi|316969757|gb|EFV53807.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 527

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQR 157
           +  + +G+  +      +   GLNL     +++F S W    DL+   +   RIG T+  
Sbjct: 391 VDRFTKGEASVFLISTRAGNLGLNLMAADTVILFDSDWNPQCDLQASDR-CHRIGQTK-- 447

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  V +Y L+A+ TIDE+++ R ++K  +++
Sbjct: 448 ------PVLIYRLVAKGTIDEIMVDRAQSKRKLEN 476


>gi|119627334|gb|EAX06929.1| RAD54-like (S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 567

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 397 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 450

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 451 IFQRQSHKKALSSCVVD 467


>gi|118401967|ref|XP_001033303.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89287651|gb|EAR85640.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1040

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 9/145 (6%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +K K+L     +   A ++ A     D ++ ++    G+    D     + N  + P + 
Sbjct: 886  QKQKSLYHFENQTTNADLLQASTLKEDSSQQEQTM--GQEEQYDNSNQNQENTSQTPTVL 943

Query: 114  AHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                  G+ GLNL  G N L+    WW+     Q I RI      + G ++  ++Y +I 
Sbjct: 944  LASLMSGYVGLNLT-GANNLILCDSWWNPAVEDQAINRI-----HRLGQQKQTYIYKMIC 997

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            ++TI+E + Q    K  I   + N+
Sbjct: 998  KDTIEEKIQQINDQKRDIFQTIFNS 1022


>gi|316969354|gb|EFV53467.1| DNA repair protein Rhp54 [Trichinella spiralis]
          Length = 328

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  F+Y L+A  +I+E 
Sbjct: 165 GCGLNL-IGANRLVMFDPDWNPANDGQAMARVW-----RDGQKKICFIYRLLATGSIEEK 218

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 219 IFQRQTHKKALSSCVVD 235


>gi|209882890|ref|XP_002142880.1| SNF2 family helicase [Cryptosporidium muris RN66]
 gi|209558486|gb|EEA08531.1| SNF2 family helicase, putative [Cryptosporidium muris RN66]
          Length = 1313

 Score = 38.9 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNLQ    +++F S W     HQ +  +   +R  + G K  V V+ L++ + ++EL
Sbjct: 886 GLGLNLQAADTVIIFDSDW---NPHQDLQAQ---SRAHRMGQKNEVRVFRLVSISGVEEL 939

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           VL+R + K  I   ++ A K
Sbjct: 940 VLKRAQKKLDIDQKIIQAGK 959


>gi|241765480|ref|ZP_04763446.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
 gi|241364765|gb|EER59758.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
          Length = 940

 Score = 38.5 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q  +E   P+L     + G GLNL    + +V    WW+       +E     R  + G 
Sbjct: 797 QAQDETSAPILLVSLKAGGLGLNLT-AADTVVHLDPWWN-----PAVEEQATARAHRIGQ 850

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + VFVY L+ + +I+E +L+    K+ +
Sbjct: 851 DQPVFVYKLVVEGSIEERMLELQARKAAL 879


>gi|134108572|ref|XP_777237.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259922|gb|EAL22590.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1399

 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 21/149 (14%)

Query: 59   LEVIIEKANAAPIIVAYHFNS--DLARL---QKAFPQGRTL-----DKDPCTIQEWN--- 105
            ++ IIE+  +  IIV   F    DL  +   ++  P  + +     D+   TI+++N   
Sbjct: 1226 IDAIIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKDFNRPM 1285

Query: 106  -EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E K P        CG  GLNL    +++     W    E+Q       V R  + G  R
Sbjct: 1286 EEDKSPRCLLMSLKCGGVGLNLCIANHVICLDLAWNAATENQ------AVDRAHRIGQTR 1339

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1340 EVVVHRLVVENTIDQRLMELQQQKQALSD 1368


>gi|297737012|emb|CBI26213.3| unnamed protein product [Vitis vinifera]
          Length = 1110

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM ++    R  + G K+ V V+ L++  +I+
Sbjct: 788 AGGLGLNLQTADTVIIFDSDW-----NPQMDQQ-AEDRAHRIGQKKEVRVFVLVSVGSIE 841

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E++L+R + K  I   ++ A
Sbjct: 842 EVILERAKQKMGIDAKVIQA 861


>gi|168019640|ref|XP_001762352.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
 gi|162686430|gb|EDQ72819.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
          Length = 1289

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +Q++N    P  +      + G GLNLQ    +++F S W     + QM ++    R  +
Sbjct: 916  LQKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVILFDSDW-----NPQM-DQQAEDRAHR 969

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 970  IGQKKEVRVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 1008


>gi|149177854|ref|ZP_01856453.1| Snf2 family protein [Planctomyces maris DSM 8797]
 gi|148843344|gb|EDL57708.1| Snf2 family protein [Planctomyces maris DSM 8797]
          Length = 1110

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
            I  LE +IE+ + A  +V   F S L+ +Q+   Q         G+T D+     +   +
Sbjct: 950  IPHLEELIEEGHKA--LVFSQFTSMLSIVQEHLDQKNIVYEYLDGQTRDRKERVDRFQTD 1007

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL     + +    WW+       +E   + R  + G  + VF
Sbjct: 1008 KDCGVFLISLKAGGLGLNLTAADYVFIL-DPWWN-----PAVETQAIDRAHRVGQTKRVF 1061

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Y LI +NT++E + +  + K  + D +L
Sbjct: 1062 AYKLICRNTVEEKITELQQQKRELADAIL 1090


>gi|320528040|ref|ZP_08029206.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320131666|gb|EFW24230.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 706

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 77  FNSDLARLQKAFP--QGR-TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           F SDL  L KA P   G+ +L+K    + +++E    +L     + G GLN+Q    I++
Sbjct: 562 FVSDLL-LGKALPVISGKLSLEKRQDILHQFDEPIARVLPIQIHAGGIGLNIQ-TAEIVI 619

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                    +  Q I R+      + G    VFVY L++ +TIDE +++RL  K  I D
Sbjct: 620 LCEPQLKPSDEMQAISRV-----YRMGQVNHVFVYRLLSADTIDETLVKRLHEKQNIFD 673


>gi|119498441|ref|XP_001265978.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119414142|gb|EAW24081.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 928

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++  +D  T +   + +  +L A  + C  GLNL    N  +    WW      Q ++R+
Sbjct: 809 KSTARDASTYKFSKDPQCKVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV 867

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G KR   V+ L+ +NTI++ VL+    + T + L+L A +++
Sbjct: 868 -----YRLGQKRETTVWRLVMENTIEDRVLE---IQDTKRKLMLAAFREK 909


>gi|126660775|ref|ZP_01731871.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126617919|gb|EAZ88692.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V VY L+A++TI+E 
Sbjct: 1312 GTGLNLT-AADYVIHLDPWWN-----PAVEDQATDRAYRIGQQRPVTVYRLVAKDTIEEK 1365

Query: 180  VLQRLRTKSTIQDLLLNA 197
            ++Q    K  + D LL+ 
Sbjct: 1366 IVQLHHRKRDLADSLLSG 1383


>gi|172057599|ref|YP_001814059.1| non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990120|gb|ACB61042.1| Non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 876

 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 55  KIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE 103
           K++ L  +IE+  AA   I++   +   LAR+++             G T  +D   + E
Sbjct: 702 KLERLLTLIEEKLAAGHRILIFSQYTKMLARIRERLAAQQRAHFLLTGETPVEDRVALCE 761

Query: 104 -WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N G++ L      + G GLNL     ++++ S WW+    QQ  +     R  + G +
Sbjct: 762 RFNAGEVDLFLISLKAGGTGLNLATADTVILYDS-WWNPAVEQQAAD-----RAHRLGQQ 815

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V V  L+   TI+E + +    K+T+ D +L+  K + + +
Sbjct: 816 SPVEVIKLLMTGTIEEKMAELQDRKATMIDAVLSDQKPDILTI 858


>gi|237739928|ref|ZP_04570409.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
 gi|229421945|gb|EEO36992.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
          Length = 896

 Score = 38.5 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  ++ +  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 777 GQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWN-----KTVEN 830

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 831 QAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|237833999|ref|XP_002366297.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
 gi|211963961|gb|EEA99156.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
          Length = 1667

 Score = 38.5 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  + +L     + G GLNLQ    I +    WW+     Q I+R     QR     + 
Sbjct: 1561 NDPSLKVLLISLKAGGEGLNLQIASRIFL-MDPWWNPAAEMQAIQRAHRIGQRH----KE 1615

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V     IA+ TI+E +LQ    K  + D
Sbjct: 1616 VIAIRFIAEKTIEERILQLQEKKQLVFD 1643


>gi|66811390|ref|XP_639875.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60466825|gb|EAL64871.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 989

 Score = 38.5 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  GGN LV +   W+     Q +ERI      + G  + VF+Y L +  TI+E 
Sbjct: 720 GVGINL-IGGNHLVLYDPDWNPAIDIQAMERIW-----REGQTKPVFIYRLFSTGTIEEK 773

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K +I + +++
Sbjct: 774 IYQRQLMKESISNSIVD 790


>gi|310822580|ref|YP_003954938.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309395652|gb|ADO73111.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1282

 Score = 38.5 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            IQ + EGK  +      + G G+NL    + ++    WW+       +E     R  + G
Sbjct: 1154 IQAFQEGKGDVFLISLKAGGTGINLT-AADYVIHLDPWWN-----PAVEDQATDRAHRIG 1207

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
              R V VY LIA+ TI+E +L
Sbjct: 1208 QTRPVTVYRLIARGTIEEQIL 1228


>gi|331244727|ref|XP_003335003.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309313993|gb|EFP90584.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 964

 Score = 38.5 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 29/206 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           QY   +R      Q    E FNS   KT++ +  +N  ++ D     KE+   KI     
Sbjct: 697 QYKSLRR-----FQLSRDEFFNSGKVKTLQLILASNNNLHADPSSSSKEIDKSKI----- 746

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIP 110
            +++ + +  ++   F   L  L+               Q    ++     Q  N+  I 
Sbjct: 747 -VKQDSPSRFLIFSQFTQMLDILKVVLKLLDVKFLVLTGQTNVTERQSLVDQFTNDPSIT 805

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL     +++F     D   H    +R    R  + G  R V V+ L
Sbjct: 806 VFLLSTRAGGLGLNLMAADTVILFDQ---DFNPHN---DRQAEDRAYRLGQTRDVKVFKL 859

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           I++ TI+E +LQ   TK  I + + N
Sbjct: 860 ISKGTIEEDILQLASTKIEIDNSISN 885


>gi|294782979|ref|ZP_06748305.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481620|gb|EFG29395.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 896

 Score = 38.5 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  ++ +  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 777 GQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWN-----KTVEN 830

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 831 QAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|221486521|gb|EEE24782.1| DNA repair helicase rad5,16, putative [Toxoplasma gondii GT1]
          Length = 1667

 Score = 38.5 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  + +L     + G GLNLQ    I +    WW+     Q I+R     QR     + 
Sbjct: 1561 NDPSLKVLLISLKAGGEGLNLQIASRIFL-MDPWWNPAAEMQAIQRAHRIGQRH----KE 1615

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V     IA+ TI+E +LQ    K  + D
Sbjct: 1616 VIAIRFIAEKTIEERILQLQEKKQLVFD 1643


>gi|193203249|ref|NP_001032980.2| hypothetical protein T23H2.3 [Caenorhabditis elegans]
 gi|163644490|gb|AAM15608.2|U80033_3 Hypothetical protein T23H2.3 [Caenorhabditis elegans]
          Length = 1001

 Score = 38.5 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN L+   L W+    QQ  +RI      + G K+ VF++ LI + TI++ 
Sbjct: 903 GVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YRMGQKKEVFIHRLIVKGTIEQR 956

Query: 180 VL 181
           V+
Sbjct: 957 VM 958


>gi|313895499|ref|ZP_07829055.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975625|gb|EFR41084.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +     A+ G G+ L      +VFFS+ + +   +Q   RI    Q     K      Y+
Sbjct: 1   MFVGQIAAAGLGITL-IAAATMVFFSMDYSMSNFEQAKARIHRVSQ-----KENCHYIYI 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +A  T+D  VL+ LR K+ +  LL++  +K
Sbjct: 55  VAAGTVDRKVLKALRDKADLAKLLVDDYRK 84


>gi|126660084|ref|ZP_01731204.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618604|gb|EAZ89353.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V VY L+A++TI+E 
Sbjct: 1312 GTGLNLT-AADYVIHLDPWWN-----PAVEDQATDRAYRIGQQRPVTVYRLVAKDTIEEK 1365

Query: 180  VLQRLRTKSTIQDLLLNA 197
            ++Q    K  + D LL+ 
Sbjct: 1366 IVQLHHRKRDLADSLLSG 1383


>gi|268579039|ref|XP_002644502.1| Hypothetical protein CBG14390 [Caenorhabditis briggsae]
 gi|187027870|emb|CAP32941.1| hypothetical protein CBG_14390 [Caenorhabditis briggsae AF16]
          Length = 2938

 Score = 38.5 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNLQ    +++F S W     HQ M  +    R  + G K  V V+ LI  N+++E 
Sbjct: 2028 GLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKAEVRVFRLITANSVEEK 2081

Query: 180  VLQRLRTKSTIQDLLLNALK 199
            +L   R K  + + ++ A K
Sbjct: 2082 ILASARFKLNVDEKVIQAGK 2101


>gi|328705070|ref|XP_001948023.2| PREDICTED: DNA repair and recombination protein RAD54-like
           [Acyrthosiphon pisum]
          Length = 751

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  FVY  +A  +I+E 
Sbjct: 565 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKPCFVYRFLATGSIEEK 618

Query: 180 VLQR 183
           ++QR
Sbjct: 619 MMQR 622


>gi|317473515|ref|ZP_07932807.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899026|gb|EFV21048.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1116

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N     +      + G GLNL    +I++ +  WW+L    Q        R  + G
Sbjct: 1008 VEDFNNDDTSVFCISLKAGGTGLNLT-SADIVIHYDPWWNLAVQNQ-----ATDRAHRIG 1061

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V VY LI + TI++ +++    K  + D +L  
Sbjct: 1062 QENVVMVYRLIVEGTIEDNIVKLQEKKKELADQILGG 1098


>gi|303248715|ref|ZP_07334968.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
 gi|302489880|gb|EFL49808.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
          Length = 1072

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ +  WW+       +E     R  + G +R VF Y +I QNT++E 
Sbjct: 983  GTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRIGQQRQVFSYKMICQNTVEEK 1036

Query: 180  VLQRLRTKSTIQDLLL 195
            +L+    K  + + ++
Sbjct: 1037 ILKLQEQKKDVAEAII 1052


>gi|299754940|ref|XP_001828301.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
 gi|298410995|gb|EAU93652.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
          Length = 836

 Score = 38.5 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLN+    N+ V    WW+       +E   ++R  + G ++ V VY + A NT++
Sbjct: 741 SGGTGLNITSCNNV-VILDPWWN-----PYVEEQAISRAHRLGQEKEVNVYRITAPNTVE 794

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
           + + +    K  I D L +     TIH
Sbjct: 795 DKICKTQHRKFNIIDPLQDRCAATTIH 821


>gi|225432582|ref|XP_002281240.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1103

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM ++    R  + G K+ V V+ L++  +I+
Sbjct: 788 AGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKKEVRVFVLVSVGSIE 841

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E++L+R + K  I   ++ A
Sbjct: 842 EVILERAKQKMGIDAKVIQA 861


>gi|182626118|ref|ZP_02953879.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
 gi|177908639|gb|EDT71160.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
          Length = 1084

 Score = 38.5 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+NEG+  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 967  VNEFNEGENSVFLISLKAGGIGLNLT-SADIVIHFDPWWN-----PAVENQATDRAHRMG 1020

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K  V V  LIA+ TI+E V+
Sbjct: 1021 QKNVVEVIKLIAKGTIEEKVV 1041


>gi|167747531|ref|ZP_02419658.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
 gi|167652893|gb|EDR97022.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
          Length = 1117

 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N     +      + G GLNL    +I++ +  WW+L    Q        R  + G
Sbjct: 1009 VEDFNNDDTSVFCISLKAGGTGLNLT-SADIVIHYDPWWNLAVQNQ-----ATDRAHRIG 1062

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V VY LI + TI++ +++    K  + D +L  
Sbjct: 1063 QENVVMVYRLIVEGTIEDNIVKLQEKKKELADQILGG 1099


>gi|317482426|ref|ZP_07941443.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916086|gb|EFV37491.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1394

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1270 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1323

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1324 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1353


>gi|312134029|ref|YP_004001368.1| superfamily ii DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
 gi|311773336|gb|ADQ02824.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
          Length = 1286

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1162 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1215

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1216 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1245


>gi|296454690|ref|YP_003661833.1| SNF2-like protein [Bifidobacterium longum subsp. longum JDM301]
 gi|296184121|gb|ADH01003.1| SNF2-related protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 1420

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1296 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1349

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1350 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1379


>gi|239621668|ref|ZP_04664699.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239515543|gb|EEQ55410.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1388

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1264 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1317

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1318 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1347


>gi|227546637|ref|ZP_03976686.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212954|gb|EEI80833.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 1394

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1270 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1323

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1324 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1353


>gi|213691499|ref|YP_002322085.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|213522960|gb|ACJ51707.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|320457574|dbj|BAJ68195.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1423

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1299 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1352

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1353 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1382


>gi|189440776|ref|YP_001955857.1| superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
 gi|189429211|gb|ACD99359.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1394

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1270 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1323

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1324 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1353


>gi|23466281|ref|NP_696884.1| helicase [Bifidobacterium longum NCC2705]
 gi|322689764|ref|YP_004209498.1| helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691713|ref|YP_004221283.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23327031|gb|AAN25520.1| possible helicase [Bifidobacterium longum NCC2705]
 gi|320456569|dbj|BAJ67191.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461100|dbj|BAJ71720.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1394

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 1270 VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 1323

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 1324 QTEDVNVYQVVAKDTIEERILELQHTKSEL 1353


>gi|332024911|gb|EGI65099.1| DNA repair and recombination protein RAD54-like protein [Acromyrmex
           echinatior]
          Length = 681

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  FVY  ++  TI+E 
Sbjct: 517 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKPCFVYRFLSTGTIEEK 570

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 571 IFQRQAHKKALSSTVVD 587


>gi|308067420|ref|YP_003869025.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
 gi|305856699|gb|ADM68487.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
          Length = 1121

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL     + + + LWW+       +E     R  + G K+
Sbjct: 1015 FNEGERELFLISLKAGGTGLNLTGADTV-ILYDLWWN-----PAVEEQATNRAHRMGQKK 1068

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ T+++
Sbjct: 1069 VVQVIRLVAQGTVED 1083


>gi|165971312|gb|AAI58841.1| Rad54l protein [Rattus norvegicus]
          Length = 470

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N    P  +      + G GLNL  G N LV F   W+    +Q + R+      +
Sbjct: 278 VERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----R 331

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 332 DGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 369


>gi|320169825|gb|EFW46724.1| DNA repair protein RAD54 [Capsaspora owczarzaki ATCC 30864]
          Length = 941

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 101 IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + E+N     + L      + G G+NL  GGN LV F   W+     Q + R+      +
Sbjct: 669 VDEFNNPSSNVFLFLLSSKAGGCGINL-IGGNRLVLFDPDWNPASDGQAMARVW-----R 722

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQR 183
            G K+ V++Y  +   TI+E + QR
Sbjct: 723 DGQKKKVYLYRFLGTGTIEEKIFQR 747


>gi|159898290|ref|YP_001544537.1| non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159891329|gb|ABX04409.1| Non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1055

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D   L  A+  G+T ++     +   + +I        + G GLNL    + ++    WW
Sbjct: 926  DRRNLSYAYLDGKTNNRAAVVDRFQTDPQIHFFLISLKAGGVGLNLT-AADYVIHIDPWW 984

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +    QQ  +R       + G  + VF+Y LI +N+++E +LQ
Sbjct: 985  NPAVEQQATDRT-----HRIGQDKPVFIYKLIVRNSVEEKILQ 1022


>gi|255552319|ref|XP_002517204.1| ATP binding protein, putative [Ricinus communis]
 gi|223543839|gb|EEF45367.1| ATP binding protein, putative [Ricinus communis]
          Length = 1079

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W         +++    R  + G K+ V V+ L++  +I+
Sbjct: 711 AGGLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 764

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E++L+R + K  I   ++ A
Sbjct: 765 EVILERAKQKMGIDAKVIQA 784


>gi|310640172|ref|YP_003944930.1| helicase, swf/snf [Paenibacillus polymyxa SC2]
 gi|309245122|gb|ADO54689.1| Helicase, SWF/SNF [Paenibacillus polymyxa SC2]
          Length = 1121

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL    + ++ + LWW+       +E     R  + G K+
Sbjct: 1015 FNEGERELFLISLKAGGTGLNLTG-ADTVILYDLWWN-----PAVEEQATNRAHRMGQKK 1068

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+AQ T+++
Sbjct: 1069 VVQVIRLVAQGTVED 1083


>gi|159126292|gb|EDP51408.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 975

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++  +D  T +   + +  +L A  + C  GLNL    N  +    WW      Q ++R+
Sbjct: 856 KSTARDASTYKFSKDPQCKVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV 914

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G KR   V+ L+ +NTI++ VL+    + T + L+L A +++
Sbjct: 915 -----YRLGQKRETTVWRLVMENTIEDRVLE---IQDTKRKLMLAAFREK 956


>gi|159489044|ref|XP_001702507.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280529|gb|EDP06286.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 533

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q   R+    QR     + VFVY  ++  +I+E 
Sbjct: 433 GCGLNL-IGANRLVLFDPDWNPANDAQAAARVWRDGQR-----KRVFVYRFLSTGSIEEK 486

Query: 180 VLQRLRTKSTIQDLL 194
           V QR  +K  ++ L+
Sbjct: 487 VFQRQMSKEGLKQLV 501


>gi|147790062|emb|CAN75984.1| hypothetical protein VITISV_012188 [Vitis vinifera]
          Length = 399

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM ++    R  + G K+ V V+ L++  +I+
Sbjct: 84  AGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKKEVRVFVLVSVGSIE 137

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E++L+R + K  I   ++ A
Sbjct: 138 EVILERAKQKMGIDAKVIQA 157


>gi|70998504|ref|XP_753974.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66851610|gb|EAL91936.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
          Length = 975

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++  +D  T +   + +  +L A  + C  GLNL    N  +    WW        IE  
Sbjct: 856 KSTARDASTYKFSKDPQCKVLLASLSVCSVGLNL-VAANQAILADSWW-----APAIEDQ 909

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V R  + G KR   V+ L+ +NTI++ VL+    + T + L+L A +++
Sbjct: 910 AVDRVYRLGQKRETTVWRLVMENTIEDRVLE---IQDTKRKLMLAAFREK 956


>gi|330506407|ref|YP_004382835.1| SNF2 family helicase [Methanosaeta concilii GP-6]
 gi|328927215|gb|AEB67017.1| SNF2 family helicase [Methanosaeta concilii GP-6]
          Length = 1035

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           IQ + +G  P+      + G GLNL    N +  F  WW+       +E     R  + G
Sbjct: 908 IQRFQQGSSPIFILSLKAGGFGLNLT-AANHVFHFDRWWN-----PAVENQATDRAFRIG 961

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K+ VFV+  +   T++E + Q +  K  + + ++ 
Sbjct: 962 QKKNVFVHKFVCAGTLEERIDQMIEQKKALAESVIG 997


>gi|320581998|gb|EFW96217.1| DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 828

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N L+     W+    QQ + R+      + G K+  F+Y  IA  TI+E 
Sbjct: 667 GCGINL-IGANRLILLDPDWNPASDQQALARVW-----RDGQKKNCFIYRFIATGTIEEK 720

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR   K  +   ++++
Sbjct: 721 IFQRQSAKMELSTCVVDS 738


>gi|238814383|ref|NP_001154953.1| RAD54-like [Nasonia vitripennis]
          Length = 749

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  FVY  +   TI+E 
Sbjct: 584 GCGLNL-VGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKPCFVYRFLCTGTIEEK 637

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 638 IFQRQAHKKALSSTVVD 654


>gi|50294037|ref|XP_449430.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528744|emb|CAG62406.1| unnamed protein product [Candida glabrata]
          Length = 920

 Score = 38.5 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + LV F   W+     Q + RI      + G KR  ++Y LI    IDE 
Sbjct: 712 GVGLNL-IGASRLVLFDNDWNPAVDLQAMSRI-----HREGQKRPCYIYRLITTGCIDEK 765

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +LQR   K  +    L++   +T
Sbjct: 766 ILQRQLMKHNLTRKFLSSNTSDT 788


>gi|19074741|ref|NP_586247.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
 gi|19069383|emb|CAD25851.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
          Length = 823

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 106 EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           EG    LF      G  G+NL     +++F S W     + QM +     R  + G K+ 
Sbjct: 417 EGSEKFLFLLTTRAGGLGINLSTADTVILFDSDW-----NPQM-DLQAQDRAHRIGQKKQ 470

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI++NT++E ++ R   K  + D+LL  
Sbjct: 471 VVVFRLISENTVEERIVYRSLQKLKLDDILLQG 503


>gi|149035611|gb|EDL90292.1| rCG50332, isoform CRA_c [Rattus norvegicus]
          Length = 568

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 397 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIEEK 450

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 451 IFQRQSHKKALSSCVVD 467


>gi|17539642|ref|NP_502082.1| Phasmid Socket Absent family member (psa-4) [Caenorhabditis elegans]
 gi|10312098|gb|AAG16655.1|AF230280_1 SWI2/SNF2-like protein [Caenorhabditis elegans]
 gi|3875463|emb|CAA92768.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|3879468|emb|CAA92978.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1474

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNLQ    +++F S W     HQ M  +    R  + G K+ V V  L
Sbjct: 921  LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKKEVRVLRL 974

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I  N+++E +L   R K  + + ++ A K
Sbjct: 975  ITANSVEEKILAAARYKLNVDEKVIQAGK 1003


>gi|302764876|ref|XP_002965859.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
 gi|300166673|gb|EFJ33279.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
          Length = 429

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +CG G++L  G  ++V  + W           R  V+R  + G K+ V+VY L+  NT++
Sbjct: 296 ACGEGISLVGGSRVVVLDTAW------NPSTVRQAVSRAFRIGQKKKVYVYRLLVGNTLE 349

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
             V ++LR +S  +D L  AL
Sbjct: 350 HEV-EKLR-RSMRKDFLAMAL 368


>gi|254573876|ref|XP_002494047.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|238033846|emb|CAY71868.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
          Length = 728

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           T++E+NE     +      CG  GLNL    N +V +  WW+ +   Q I+R+      +
Sbjct: 607 TLKEFNENPETTVLLCSLKCGAIGLNLTIA-NRVVIYDPWWNPQVEDQAIDRV-----YR 660

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            G  + V VY LI +++++E +++    K  + + +++   K+ + +
Sbjct: 661 FGQTKEVDVYRLIIKDSVEENIVRLQEKKRQVAEAVVDIHGKKKVSL 707


>gi|195380475|ref|XP_002048996.1| GJ21345 [Drosophila virilis]
 gi|194143793|gb|EDW60189.1| GJ21345 [Drosophila virilis]
          Length = 714

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 101 IQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           IQE+N E     +F      G  G+NL     ++++ S W    + Q M       R  +
Sbjct: 499 IQEYNMEKSTKFIFLLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAM------DRAHR 552

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V+ L+ +NT+DE +++R   K  +  +++ A
Sbjct: 553 IGQKKQVRVFRLVTENTVDEKIVERAEVKLRLDRMVIQA 591


>gi|149238896|ref|XP_001525324.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|206558165|sp|A5E0W5|INO80_LODEL RecName: Full=Putative DNA helicase ino80
 gi|146450817|gb|EDK45073.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1575

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G TRQ        V VY L+ +NTI+
Sbjct: 1390 GLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQ--------VTVYRLLTRNTIE 1441

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +  R + K  +Q +++
Sbjct: 1442 ERMRDRAKQKEQVQQVVM 1459


>gi|313676698|ref|YP_004054694.1| snf2-related protein [Marivirga tractuosa DSM 4126]
 gi|312943396|gb|ADR22586.1| SNF2-related protein [Marivirga tractuosa DSM 4126]
          Length = 976

 Score = 38.5 bits (88), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + +     WW+       IE+  V R  + G K+ VF Y  I +NT++
Sbjct: 885 AGGLGLNLT-AADYVFLLDPWWN-----PAIEQQAVDRAHRIGQKQQVFTYKFITKNTVE 938

Query: 178 ELVLQRLRTKSTI-QDLL------LNALKKETIH 204
           E +L     K T+ +DL+      + +L KE I 
Sbjct: 939 EKILALQEKKLTLARDLISTEESFMKSLSKEDIQ 972


>gi|303391164|ref|XP_003073812.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302960|gb|ADM12452.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 823

 Score = 38.5 bits (88), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W     + QM +     R  + G K+ V V+ LI++NT++E 
Sbjct: 432 GLGINLSTADTVILFDSDW-----NPQM-DLQAQDRAHRIGQKKQVVVFRLISENTVEER 485

Query: 180 VLQRLRTKSTIQDLLLNA 197
           ++ R   K  + D+LL  
Sbjct: 486 IVYRSLQKLKLDDILLQG 503


>gi|302794729|ref|XP_002979128.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
 gi|300152896|gb|EFJ19536.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
          Length = 851

 Score = 38.5 bits (88), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    N+ +    WW+    +Q ++R+      + G  R V V+ LIA ++I+
Sbjct: 758 AAGVGLNLVTASNVFMM-DPWWNPAVEEQAMDRV-----HRLGQTRDVHVFRLIATDSIE 811

Query: 178 ELVLQ 182
           E +LQ
Sbjct: 812 ERLLQ 816


>gi|254569384|ref|XP_002491802.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
 gi|238031599|emb|CAY69522.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
          Length = 1061

 Score = 38.5 bits (88), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           + G G+NL     ++++ S W    + Q M    RIG T+Q        V+VY L+ +N 
Sbjct: 544 AGGLGINLTSADTVILYDSDWNPQADLQAMDRAHRIGQTKQ--------VYVYRLVTENA 595

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E VL+R + K  +  L++
Sbjct: 596 IEEKVLERAQQKLRLDQLVI 615


>gi|332173366|gb|AEE22620.1| SNF2-related protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1440

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++  +  G+  +      + G GLNL    + ++    WW+       +E     R  +
Sbjct: 1328 ASVNAFQRGQGDIFLISLKAGGSGLNLT-AADYVIHMDPWWN-----PAVEEQASDRAHR 1381

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI QNTI+E ++   + K  + D LL
Sbjct: 1382 IGQLRPVTIYRLITQNTIEEKIVALHKQKRDLADNLL 1418


>gi|330803641|ref|XP_003289812.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
 gi|325080071|gb|EGC33642.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
          Length = 731

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  GGN LV +   W+     Q +ER+      + G  + VF+Y L +  TI+E 
Sbjct: 462 GVGINL-IGGNHLVLYDPDWNPAIDIQAMERVW-----REGQNKPVFIYRLFSTGTIEEK 515

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K +I + +++
Sbjct: 516 IYQRQLMKESISNSIVD 532


>gi|296328143|ref|ZP_06870674.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154655|gb|EFG95441.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +    +PL      + G GLNL     +++    WW++    Q        R  + G
Sbjct: 115 VENFQNEAVPLFLISLKAGGTGLNLTKAS-VVIHLDPWWNISVQNQ-----ATDRAHRIG 168

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  V ++ LI +NTI+E +L     K  + D+ +
Sbjct: 169 QEDTVQLFNLITKNTIEEKILNLQSKKKELSDIFV 203


>gi|288559877|ref|YP_003423363.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
 gi|288542587|gb|ADC46471.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
          Length = 698

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G GLNL    N+ + + LWW+     Q  +R+      + G ++ V VY  
Sbjct: 597 ILIATLKTGGVGLNLTAASNV-IHYDLWWNPAVENQATDRV-----HRIGQEKDVMVYRF 650

Query: 171 IAQNTIDELVLQRLRTK 187
           I + T++E +   ++TK
Sbjct: 651 ITKGTLEEEIDSIIKTK 667


>gi|294867966|ref|XP_002765317.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239865330|gb|EEQ98034.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 1182

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            LL    ++ G GLNLQ   ++ +    WW+    +Q I+R       + G ++ V  ++L
Sbjct: 1082 LLLVSISAGGEGLNLQRASHVFIL-DPWWNPAVEKQAIQRC-----HRLGQQQIVRSHHL 1135

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL-----NALKKETI 203
            I++NTI+E +      K  I D  +      AL+K TI
Sbjct: 1136 ISENTIEERIKALQEKKQLIFDGTIGGNFNGALEKLTI 1173


>gi|224099763|ref|XP_002311608.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851428|gb|EEE88975.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1131

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM ++    R  + G K+ V V+ L++  +++
Sbjct: 805 AGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKKEVRVFVLVSVGSVE 858

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E++L+R + K  I   ++ A
Sbjct: 859 EVILERAKQKKGIDAKVIQA 878


>gi|154488700|ref|ZP_02029549.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
 gi|154082837|gb|EDN81882.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
          Length = 721

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G GLN+Q    +++         + +  IE   ++R  + G  R V VY L
Sbjct: 586 VLVAQIVAGGTGLNIQSASVVIICEP------QLKPSIENQAISRAYRMGQARNVLVYRL 639

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +A+NTIDE +   L  K  +     NA   E+
Sbjct: 640 LAENTIDEKITDILARKQEV----FNAFANES 667


>gi|326430759|gb|EGD76329.1| hypothetical protein PTSG_01031 [Salpingoeca sp. ATCC 50818]
          Length = 752

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G  +  FVY  +   TI+E 
Sbjct: 559 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQTKLCFVYRFVTTGTIEEK 612

Query: 180 VLQR 183
           +LQR
Sbjct: 613 ILQR 616


>gi|326332924|ref|ZP_08199181.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325949282|gb|EGD41365.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 1055

 Score = 38.5 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            +N  A  SA   ++ L L  G V  +++       D  +  +E +  + + A  +V   F
Sbjct: 858  DNRVAILSALTRLRQLSLDPGLVDPEDDHVGSAKLDTLVDHIEELAAEGHKA--LVFSQF 915

Query: 78   NSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
             S L R         +  A+  G T D+    I+ + +G  P+      + G GL L   
Sbjct: 916  TSFLGRARTRLAEAGIDAAYLDGATRDRG-AVIESFRDGDAPVFLISLKAGGVGLTLTEA 974

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + V    WW+     Q ++R       + G  + V VY L++ +TI+E V++    K+
Sbjct: 975  DYVFVL-DPWWNPAAEAQAVDR-----AHRIGQTQHVMVYRLVSTDTIEEKVMELKERKA 1028

Query: 189  TI 190
             +
Sbjct: 1029 EL 1030


>gi|302802704|ref|XP_002983106.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
 gi|300149259|gb|EFJ15915.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
          Length = 429

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +CG G++L  G  ++V  + W           R  V+R  + G K+ V+VY L+  NT++
Sbjct: 296 ACGEGISLVGGSRVVVLDTAW------NPSTVRQAVSRAFRIGQKKKVYVYRLLVGNTLE 349

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
             V ++LR +S  +D L  AL
Sbjct: 350 HEV-EKLR-RSMRKDFLAMAL 368


>gi|50414862|gb|AAH77794.1| HELLS protein [Xenopus laevis]
          Length = 756

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     ++++ S W    DL+  Q    RIG TR         V VY L+  NTI
Sbjct: 681 GLGINLTAADTVIIYDSDWNPQADLQ-AQDRCHRIGQTR--------PVVVYRLVTANTI 731

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D+ +++R   K  ++ L++
Sbjct: 732 DQKIVERAAAKRKLEKLVI 750


>gi|307203835|gb|EFN82771.1| DNA repair and recombination protein RAD54-like [Harpegnathos
           saltator]
          Length = 679

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  FVY  ++  TI+E 
Sbjct: 515 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKPCFVYRFLSTGTIEEK 568

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 569 IFQRQAHKKALSSTVVD 585


>gi|255956043|ref|XP_002568774.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590485|emb|CAP96675.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1331

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 120  GHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            G GLN+Q    +++F   F+  W         E   + R  + G K+ VFVY L+A  T+
Sbjct: 1164 GVGLNIQTANRVVIFDFEFNPTW---------EEQAIGRAYRIGQKKKVFVYRLVAAGTV 1214

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +  +   KS +   LL+
Sbjct: 1215 EEKIFCKATFKSQLAGRLLD 1234


>gi|254452793|ref|ZP_05066230.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
 gi|198267199|gb|EDY91469.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
          Length = 970

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+    I ++  G   +      + G GLNL    + ++ +  WW+       +ER
Sbjct: 850 GQTRDRS-SEIDKFQSGDAQVFLISLKAGGTGLNLT-AADTVILYDPWWN-----PAVER 902

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  + G  + VFVY L  + T++  +      K  + D L   
Sbjct: 903 QAMDRAHRIGQDKPVFVYRLYTEGTVESAIQNMQARKQALADALFEG 949


>gi|196008607|ref|XP_002114169.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
 gi|190583188|gb|EDV23259.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
          Length = 687

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + LV + + W+     Q + RI      + G KR V++Y L+   TI+E 
Sbjct: 574 GTGLNL-IGASRLVLYDIDWNPANDLQAMARIW-----RDGQKRDVYIYRLVTTGTIEEK 627

Query: 180 VLQR 183
           + QR
Sbjct: 628 IFQR 631


>gi|145497571|ref|XP_001434774.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401902|emb|CAK67377.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 90  QGRTLDKD--PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           QG+ +DK+    +I+++ E +I ++     +  +G+NL    ++L+    WW+     Q 
Sbjct: 829 QGK-MDKNQRKASIKDFFEKQITVMLISLKAGAYGINLSCANHVLLV-DPWWNPAVEDQA 886

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           +ER+      + G ++ V +   I  NTI+E VLQ  + K
Sbjct: 887 VERV-----HRLGQQKQVQIVSFICDNTIEERVLQMHKMK 921


>gi|50302399|ref|XP_451134.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640265|emb|CAH02722.1| KLLA0A03069p [Kluyveromyces lactis]
          Length = 895

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 720 EGQEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALARVW-----RDGQKKDC 773

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 774 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 804


>gi|255552930|ref|XP_002517508.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223543519|gb|EEF45050.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1138

 Score = 38.1 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 101  IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+++N+ K    ++ A   +C  G+NL  G + +V   + W+       + R  ++R  +
Sbjct: 990  IKDFNDRKSEAKVMLASTKACSEGINL-VGASRVVLLDVVWN-----PSVVRQAISRAYR 1043

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G ++ V++Y+LIA  T++E    R   K  + +L+ ++
Sbjct: 1044 LGQEKVVYIYHLIASETLEEDKYCRQAEKERLSELVFDS 1082


>gi|292630869|sp|B3LN76|RDH54_YEAS1 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|190408764|gb|EDV12029.1| helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 924

 Score = 38.1 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 708 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 761

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 762 EKILQRQLMKNSLSQKFL 779


>gi|323508306|emb|CBQ68177.1| related to INO80-ATPase with chromatin remodeling and helicase
            activity [Sporisorium reilianum]
          Length = 1910

 Score = 38.1 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+     Q ++R       + G  + V VY LI + TIDE 
Sbjct: 1663 GLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AHRLGQTKQVTVYRLITKGTIDER 1716

Query: 180  VLQRLRTKSTIQDLLL 195
            +++  R K  +QD+++
Sbjct: 1717 IVRLARNKKEVQDIVV 1732


>gi|262066952|ref|ZP_06026564.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379300|gb|EFE86818.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 896

 Score = 38.1 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T D+     +  ++ +  +      + G GLNL     I ++   WW+     + +E 
Sbjct: 777 GQTKDRQSLVDKFQSDDRYKVFVMTLKTGGVGLNLVSADTIFIY-DPWWN-----KTVEN 830

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 831 QAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|238882009|gb|EEQ45647.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            albicans WO-1]
          Length = 1680

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1172 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1225

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1226 EMILERAHKKLEIDGKVIQAGK 1247


>gi|193084170|gb|ACF09835.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-207-H3]
          Length = 569

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +  G   LL A   +   G+NL      ++F  L W    H+Q  +R+      + 
Sbjct: 453 NIDYFQNGDTKLLIAGLRAGNLGINLTRA-KYVIFAELDWVPAVHRQAEDRL-----HRI 506

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K  VF YYLI + T+DE V   L  KS   D +++
Sbjct: 507 GQKNTVFAYYLIGKRTLDEHVANILVDKSYEIDAIMD 543


>gi|68467034|ref|XP_722432.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
 gi|46444408|gb|EAL03683.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
          Length = 1690

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1180 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1233

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1234 EMILERAHKKLEIDGKVIQAGK 1255


>gi|307174075|gb|EFN64762.1| DNA repair and recombination protein RAD54-like [Camponotus
           floridanus]
          Length = 682

 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  FVY  ++  TI+E 
Sbjct: 518 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKTCFVYRFLSTGTIEEK 571

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 572 IFQRQAHKKALSSTVVD 588


>gi|255724370|ref|XP_002547114.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
 gi|240135005|gb|EER34559.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
          Length = 1680

 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1180 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1233

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1234 EMILERAHAKLEIDGKVIQAGK 1255


>gi|257094640|ref|YP_003168281.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047164|gb|ACV36352.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1003

 Score = 38.1 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 71  IIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I++   F S LA ++K             G T D++   ++ +   ++P+      + G 
Sbjct: 853 ILLFSQFTSMLALIEKELKLAGIDYVILTGDTRDRE-AQVRRFQACEVPVFLISLKTGGV 911

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    + ++ +  WW+     Q  +R       + G  + VFVY LI   +I+E +L
Sbjct: 912 GLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLGQDKPVFVYKLIVAGSIEEKIL 965

Query: 182 QRLRTKSTIQDLLLN 196
                K+ +   +L+
Sbjct: 966 ALQERKAELAAHILS 980


>gi|292630891|sp|B5VE38|RDH54_YEAS6 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|207347718|gb|EDZ73802.1| YBR073Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 924

 Score = 38.1 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 708 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 761

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 762 EKILQRQLMKNSLSQKFL 779


>gi|292630870|sp|A6ZL17|RDH54_YEAS7 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|151946464|gb|EDN64686.1| rad54-like protein [Saccharomyces cerevisiae YJM789]
          Length = 924

 Score = 38.1 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 708 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 761

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 762 EKILQRQLMKNSLSQKFL 779


>gi|88857070|ref|ZP_01131713.1| helicase [Pseudoalteromonas tunicata D2]
 gi|88820267|gb|EAR30079.1| helicase [Pseudoalteromonas tunicata D2]
          Length = 1402

 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V VY LIA+ TI+E 
Sbjct: 1311 GSGLNLT-AADYVIHMDPWWN-----PAVEEQASDRAHRMGQQRPVTVYRLIAKGTIEEQ 1364

Query: 180  VLQRLRTKSTIQDLLL 195
            ++   + K  + D LL
Sbjct: 1365 IVAMHQHKRDLADTLL 1380


>gi|68466749|ref|XP_722570.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|46444555|gb|EAL03829.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|74099650|gb|AAZ99066.1| Swi/Snf core member protein [Candida albicans]
          Length = 1690

 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1180 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1233

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1234 EMILERAHKKLEIDGKVIQAGK 1255


>gi|46108786|ref|XP_381451.1| hypothetical protein FG01275.1 [Gibberella zeae PH-1]
          Length = 1023

 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E+NE   IP+      + G G+NL     +++F     D  ++ Q  +     R  + 
Sbjct: 903  IDEFNEDSDIPVFLLTTGAGGTGINLTAANKVIIF-----DQSDNPQ-DDIQAENRAHRL 956

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            G KR V +  LIA NTI+EL+ +  + K  + + +  A+  E   V
Sbjct: 957  GQKRDVEIIRLIATNTIEELIYKACQKKIELANKVTGAVADEDPAV 1002


>gi|198430961|ref|XP_002124279.1| PREDICTED: similar to MGC115661 protein [Ciona intestinalis]
          Length = 831

 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D  R+  + P  R    +    QE +  K+ LL    A+ G  L   +  +++VF  L+W
Sbjct: 591 DYIRIDGSTPSERR-QTEVARFQENSSCKVALLSITAANMGITL---HSASLVVFAELFW 646

Query: 140 D---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           +   L + +    RIG   QR       V V+YLIA+NT D+L+ Q ++ K
Sbjct: 647 NPGILVQAEDRCYRIG---QRDV-----VNVHYLIAKNTADDLIWQMIKKK 689


>gi|145342259|ref|XP_001416174.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
 gi|144576399|gb|ABO94467.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
          Length = 1053

 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 101 IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +Q +N  K   +F     S G G+NL  G + ++F+   W+    QQ  +R       + 
Sbjct: 870 MQRFNSDKRLFVFILSTRSGGFGINLT-GADTVIFYDSDWNPAMDQQAQDRC-----HRI 923

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  R V +Y LI++ TI+E +LQ+   K  + ++ +
Sbjct: 924 GQTREVHIYRLISEGTIEESILQKAVQKRELDNMAI 959


>gi|327538183|gb|EGF24865.1| SWF/SNF family helicase [Rhodopirellula baltica WH47]
          Length = 966

 Score = 38.1 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+  L      + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 855 VDAFQNGEGDLFLISLKAGGTGLNLT-AADYVLHLDPWWN-----PAVEDQATDRAHRIG 908

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
            +RAV VY L+A+ TI+E +LQ
Sbjct: 909 QERAVTVYRLVAERTIEEQILQ 930


>gi|326381641|ref|ZP_08203335.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199888|gb|EGD57068.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 1154

 Score = 38.1 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+++ +G+  +      + G GLNL    +       WW+     Q ++R       + G
Sbjct: 1046 IEQFTDGRTRVFLISLKAGGFGLNLT-AADYCFMTDPWWNPAAEAQAVDR-----AHRIG 1099

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              RAV VY +++  TI+E V+     K  + D LL+
Sbjct: 1100 QHRAVTVYRMVSTGTIEEKVIDLQTRKRELFDALLD 1135


>gi|89095677|ref|ZP_01168571.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
 gi|89089423|gb|EAR68530.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
          Length = 942

 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  + +G+ P+      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 833 ITRFQDGEFPVFLLSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 886

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ LI   T++E +   L  K T+ D ++ +
Sbjct: 887 QERFVHVHKLICTGTLEEKIDLMLEKKQTLNDQVIQS 923


>gi|71033491|ref|XP_766387.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353344|gb|EAN34104.1| hypothetical protein TP01_0866 [Theileria parva]
          Length = 1816

 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++++ S W    + Q         R  + G  + V +Y L+ +++I++ 
Sbjct: 1196 GLGINLTSADTVIIYDSDWNPQNDLQ------AEARAHRIGQTKTVQIYRLVTKDSIEQT 1249

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +L+R +TK  +  L++  L K
Sbjct: 1250 ILERAKTKMVLDALVVQGLNK 1270


>gi|269119290|ref|YP_003307467.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613168|gb|ACZ07536.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 1125

 Score = 38.1 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N G  P+      + G GLNL  G + ++    WW+       +E     R  + G
Sbjct: 1016 VNSFNAGNTPIFLISLKAGGTGLNLT-GSDTVIHVDPWWN-----PSVENQASDRSHRIG 1069

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-------LLLNALKKETI 203
             K +V V  LI + TI+E +++    K  + D        L+N L +E I
Sbjct: 1070 QKNSVQVIKLITKGTIEEKIMKLQNKKKKLIDNVLTSEGSLINTLSEEDI 1119


>gi|187779662|ref|ZP_02996135.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
 gi|187773287|gb|EDU37089.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
          Length = 1077

 Score = 38.1 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDEL----------VLQRLRTKSTIQDLLLNALKKETI 203
             K+ V V  LIA+ TI+E           ++ ++  K+  +++LL+ + +E I
Sbjct: 1019 QKKTVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVIDKNLGEEVLLSNMAEEEI 1071


>gi|32470671|ref|NP_863664.1| helicase [Rhodopirellula baltica SH 1]
 gi|32442816|emb|CAD71334.1| helicase [Rhodopirellula baltica SH 1]
          Length = 1176

 Score = 38.1 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +  G+  L      + G GLNL    + ++    WW+       +E     R  + G
Sbjct: 1065 VDAFQNGEGDLFLISLKAGGTGLNLT-AADYVLHLDPWWN-----PAVEDQATDRAHRIG 1118

Query: 161  FKRAVFVYYLIAQNTIDELVLQ 182
             +RAV VY L+A+ TI+E +LQ
Sbjct: 1119 QERAVTVYRLVAERTIEEQILQ 1140


>gi|292630874|sp|C7GQI8|RDH54_YEAS2 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|256271911|gb|EEU06936.1| Rdh54p [Saccharomyces cerevisiae JAY291]
          Length = 924

 Score = 38.1 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 708 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 761

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 762 EKILQRQLMKNSLSQKFL 779


>gi|164656581|ref|XP_001729418.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
 gi|159103309|gb|EDP42204.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
          Length = 1517

 Score = 38.1 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+     Q ++R       + G  + V VY LI + TIDE 
Sbjct: 1281 GLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AHRLGQTKQVTVYRLITKGTIDER 1334

Query: 180  VLQRLRTKSTIQDLLL 195
            +++  R K  +QD+++
Sbjct: 1335 IVKLARNKKEVQDIVV 1350


>gi|71004464|ref|XP_756898.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
 gi|74704380|sp|Q4PGL2|INO80_USTMA RecName: Full=Putative DNA helicase INO80
 gi|46095890|gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
          Length = 1910

 Score = 38.1 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++F+   W+     Q ++R       + G  + V VY LI + TIDE 
Sbjct: 1658 GLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AHRLGQTKQVTVYRLITKGTIDER 1711

Query: 180  VLQRLRTKSTIQDLLL 195
            +++  R K  +QD+++
Sbjct: 1712 IVRLARNKKEVQDIVV 1727


>gi|290878090|emb|CBK39149.1| Rdh54p [Saccharomyces cerevisiae EC1118]
          Length = 924

 Score = 38.1 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 708 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 761

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 762 EKILQRQLMKNSLSQKFL 779


>gi|257064055|ref|YP_003143727.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256791708|gb|ACV22378.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 907

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +N+ + P+L     + G GLN+      ++    W +  + Q        +R  + G
Sbjct: 799 VDAFNKDETPVLLVSMRAGGVGLNMTGASTAIIADPFWHEAAQTQ------AYSRLWRLG 852

Query: 161 FKRAVFVYYLIAQNTIDELVL 181
              +VFVY +IA+NTI++ +L
Sbjct: 853 QDSSVFVYQIIAENTIEDRIL 873


>gi|321255221|ref|XP_003193350.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus gattii
           WM276]
 gi|317459820|gb|ADV21563.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           gattii WM276]
          Length = 899

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    N+      WW     Q  IE   + R  + G K+ V V+ LIA+NTI+  VL
Sbjct: 806 GLNLTAASNVF-LCDPWW-----QSAIEAQAIDRAHRMGQKKIVRVFQLIAENTIESSVL 859


>gi|218282742|ref|ZP_03488939.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
 gi|218216387|gb|EEC89925.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
          Length = 1054

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL      ++ F  WW++    Q        R  + G  + V VY L+ +NTI+E 
Sbjct: 963  GTGLNLT-KAQAVIHFDPWWNVSAQNQ-----ATDRAYRIGQTKNVLVYQLLMKNTIEEK 1016

Query: 180  VLQRLRTKSTIQDLLL 195
            + +  + K  + DL +
Sbjct: 1017 IYEMQKRKKEMSDLFV 1032


>gi|260818894|ref|XP_002604617.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
 gi|229289945|gb|EEN60628.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
          Length = 1277

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N ++ + LW++  +  Q  +R       + G  + VFVY  I++NT +E 
Sbjct: 1186 GVGLNLT-AANHVIHYDLWFNPAKENQATDR-----AFRIGQTKTVFVYRFISENTFEEK 1239

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +   L  K  + DL + A
Sbjct: 1240 INVMLEKKKDLSDLSVQA 1257


>gi|84998372|ref|XP_953907.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1 )
            [Theileria annulata]
 gi|65304905|emb|CAI73230.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1
            homologue), putative [Theileria annulata]
          Length = 1816

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++++ S W    + Q         R  + G  + V +Y L+ +++I++ 
Sbjct: 1195 GLGINLTSADTVIIYDSDWNPQNDLQ------AEARAHRIGQTKTVQIYRLVTKDSIEQT 1248

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +L+R +TK  +  L++  L K
Sbjct: 1249 ILERAKTKMVLDALVVQGLNK 1269


>gi|19074332|ref|NP_585838.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19068974|emb|CAD25442.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 556

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +C  GL L   G  +VF  L+W+     Q  +RI      + G K +V + YL+A+ TI
Sbjct: 454 TACSTGLTLT-AGRAVVFAELYWNPGVLLQAEDRI-----HRIGQKSSVDIIYLVAKGTI 507

Query: 177 DELVLQRLRTKSTIQDLL 194
           DE V  +L +K  + + L
Sbjct: 508 DEYVWPKLLSKLNVLESL 525


>gi|66827655|ref|XP_647182.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475337|gb|EAL73272.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3069

 Score = 38.1 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIE 149
            +DK     + +N + KI L      S G GLNL  G + ++F+   W+     + Q    
Sbjct: 1431 IDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDRCH 1489

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RIG TR+        V +Y  I Q+TI+E +L++   K  +  +++ A
Sbjct: 1490 RIGQTRE--------VNIYRFITQHTIEENILKKSNQKRQLDKMVIKA 1529


>gi|224111230|ref|XP_002315787.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864827|gb|EEF01958.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1132

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNLQ    +++F S W         +++    R  + G K+ V V+ L++  +++E+
Sbjct: 808 GLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEV 861

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +L+R + K  I   ++ A
Sbjct: 862 ILERAKQKKGIDAKVIQA 879


>gi|329954230|ref|ZP_08295324.1| helicase protein [Bacteroides clarus YIT 12056]
 gi|328527936|gb|EGF54922.1| helicase protein [Bacteroides clarus YIT 12056]
          Length = 562

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCGHGL 123
           +IV  +    +  L+K FPQ  T+  +   I++        N     L+  +  S G GL
Sbjct: 415 LIVFAYLKEVVMELKKMFPQAVTVTGEDNAIRKQMSVDAFQNNPDCTLIILNYKSGGTGL 474

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L     +  F    W   + +Q  +R       + G K  V  YY + +NTIDE +   
Sbjct: 475 TLTASSRV-AFIEFPWTFSDCEQAEDR-----AHRNGQKNNVNCYYFLGKNTIDEYMYDV 528

Query: 184 LRTKSTIQD 192
           ++ K  I +
Sbjct: 529 IQRKKGIAN 537


>gi|261334500|emb|CBH17494.1| DNA repair and recombination protein RAD54,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 1037

 Score = 38.1 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  +I  L +  A  G GLNL  G N L+ F   W+     Q + R+      + G K+ 
Sbjct: 767 NSQEIVFLLSSKAG-GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKR 819

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           VF+Y L++  +I+E + QR  +K   Q L  N +  +T
Sbjct: 820 VFIYRLLSTGSIEEKIYQRQVSK---QGLSANVVDMQT 854


>gi|241950892|ref|XP_002418168.1| ATP-dependent helicase, putative; SWI/SNF chromatin remodelling
            complex protein, putative; SWI/SNF complex component,
            putative; transcription regulatory protein, putative
            [Candida dubliniensis CD36]
 gi|223641507|emb|CAX43468.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1663

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1153 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1206

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1207 EMILERAHKKLEIDGKVIQAGK 1228


>gi|50308261|ref|XP_454131.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643266|emb|CAG99218.1| KLLA0E04159p [Kluyveromyces lactis]
          Length = 826

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K  L      + G G+NL    ++++F S W         ++   + R  + G  + V 
Sbjct: 639 SKANLFLLSTRAAGLGINLTAADSVIIFDSDW------NPQVDLQAMDRAHRIGQTKPVI 692

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL-----NALKK 200
           VY L   NTI+ +++ R   K  ++ L++     N LKK
Sbjct: 693 VYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKK 731


>gi|71755407|ref|XP_828618.1| DNA repair/recombination protein RAD54 [Trypanosoma brucei TREU927]
 gi|70834004|gb|EAN79506.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           brucei]
          Length = 1037

 Score = 38.1 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  +I  L +  A  G GLNL  G N L+ F   W+     Q + R+      + G K+ 
Sbjct: 767 NSQEIVFLLSSKAG-GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKR 819

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           VF+Y L++  +I+E + QR  +K   Q L  N +  +T
Sbjct: 820 VFIYRLLSTGSIEEKIYQRQVSK---QGLSANVVDMQT 854


>gi|321265706|ref|XP_003197569.1| helicase domain DNA excision repair protein (Rad26L) [Cryptococcus
           gattii WM276]
 gi|317464049|gb|ADV25782.1| Helicase domain DNA excision repair protein (Rad26L), putative
           [Cryptococcus gattii WM276]
          Length = 1016

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           ++ L++I    + +P +  + F++ L     A  +   +D+     Q+  +    +L + 
Sbjct: 644 VRLLKIISRFISTSPSLSGFEFDA-LTGEASAVERQEMIDR----FQDREKDHFIMLIST 698

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            A  G GLNL     +++F   W              + R  + G KR V VY LI Q T
Sbjct: 699 RAG-GVGLNLTAANKVVIFDPSWT-------------MDRAFRIGQKRTVEVYRLIGQGT 744

Query: 176 IDELVLQR 183
           I+EL+ +R
Sbjct: 745 IEELIYER 752


>gi|242767903|ref|XP_002341462.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724658|gb|EED24075.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1499

 Score = 38.1 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G  + V VY L++++TI+E 
Sbjct: 834 GLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQTKPVSVYRLVSKDTIEEE 887

Query: 180 VLQRLRTKSTIQ 191
           VL+R R K  ++
Sbjct: 888 VLERARNKLMLE 899


>gi|330443433|ref|NP_009629.4| Rdh54p [Saccharomyces cerevisiae S288c]
 gi|329136720|tpg|DAA07193.2| TPA: Rdh54p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score = 38.1 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 742 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 795

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 796 EKILQRQLMKNSLSQKFL 813


>gi|153006894|ref|YP_001381219.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030467|gb|ABS28235.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 931

 Score = 38.1 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P L     + G GLNL    ++ V F  WW+       +E     R  + G KR V V+
Sbjct: 820 LPFLVLSLKAGGTGLNLTAASHV-VHFDRWWN-----PAVENQATDRAFRIGQKRPVLVH 873

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+ + T++E +   L  K  +   LL
Sbjct: 874 KLVCRGTVEERIDSMLEDKRRLSQELL 900


>gi|159131149|gb|EDP56262.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           A1163]
          Length = 1523

 Score = 38.1 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G  R V VY L++++T++E 
Sbjct: 839 GLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQTRPVSVYRLVSKDTVEEE 892

Query: 180 VLQRLRTK 187
           V++R R K
Sbjct: 893 VIERARNK 900


>gi|119495934|ref|XP_001264742.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
 gi|119412904|gb|EAW22845.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
          Length = 1523

 Score = 38.1 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G  R V VY L++++T++E 
Sbjct: 839 GLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQTRPVSVYRLVSKDTVEEE 892

Query: 180 VLQRLRTK 187
           V++R R K
Sbjct: 893 VIERARNK 900


>gi|315499178|ref|YP_004087982.1| snf2-related protein [Asticcacaulis excentricus CB 48]
 gi|315417190|gb|ADU13831.1| SNF2-related protein [Asticcacaulis excentricus CB 48]
          Length = 1107

 Score = 38.1 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 16/117 (13%)

Query: 71   IIVAYHFNSDL----ARLQKA-----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +I+   F S L    ARL KA        G+T ++    +  +  G  P+      + G 
Sbjct: 961  LIIFSQFTSMLDLIAARLDKAGLGYGILTGKTQNRKK-EVDAFQSGDNPIFLISLKAGGT 1019

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GLNL    + ++ +  WW+     Q I+R       + G  + VFVY L A+ TI++
Sbjct: 1020 GLNLT-SADTVILYDPWWNPAVEAQAIDR-----AYRIGQDKPVFVYRLCAEGTIED 1070


>gi|73977923|ref|XP_532592.2| PREDICTED: similar to DNA repair and recombination protein
           RAD54-like (RAD54 homolog) (hRAD54) (hHR54) [Canis
           familiaris]
          Length = 907

 Score = 38.1 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 737 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 790

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 791 IFQRQSHKKALSSCVVD 807


>gi|28211487|ref|NP_782431.1| SWF/SNF family helicase [Clostridium tetani E88]
 gi|28203928|gb|AAO36368.1| SWF/SNF family helicase [Clostridium tetani E88]
          Length = 1093

 Score = 38.1 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D + L  + P  + ++     ++++N+GK  +      + G GLNL    ++++ F  WW
Sbjct: 964  DFSYLDGSIPSEKRMN----MVRDFNDGKNSVFLISLKAGGTGLNLT-SADVVIHFDPWW 1018

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNAL 198
            +       +E     R  + G +  V V  +IA+ TI+E ++L +   K  I +L+ + L
Sbjct: 1019 N-----PAVEDQATDRAHRIGQQNVVEVIKIIAKGTIEEKIILLQEEKKKLISELMGDEL 1073


>gi|70995269|ref|XP_752395.1| chromodomain helicase (Chd1) [Aspergillus fumigatus Af293]
 gi|66850030|gb|EAL90357.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           Af293]
          Length = 1523

 Score = 38.1 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M       R  + G  R V VY L++++T++E 
Sbjct: 839 GLGINLMTADTVILFDSDWNPQADLQAM------ARAHRIGQTRPVSVYRLVSKDTVEEE 892

Query: 180 VLQRLRTK 187
           V++R R K
Sbjct: 893 VIERARNK 900


>gi|291455433|ref|ZP_06594823.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
 gi|291358382|gb|EFE85284.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 958

 Score = 38.1 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V    WW+       +E     R  + G
Sbjct: 844 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHVDRWWN-----PAVEAQATDRAYRIG 897

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ ++ + TI++ + + L  K  + D +L  
Sbjct: 898 QTRPVQVHRIVTEGTIEDRIAELLVRKQALADAVLTG 934


>gi|293401290|ref|ZP_06645434.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305416|gb|EFE46661.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1075

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD------KDPCT-----I 101
            KI A    IE  +A+   +++   F S L+ ++K   Q R +D        P       +
Sbjct: 910  KINACMEFIENCRASGKKVLLFSQFTSLLSLIEKELKQ-REIDYYLLKGSTPKVQRQQYV 968

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +N    P+      + G GLNL     +++ F  WW++    Q        R  + G 
Sbjct: 969  NAFNVDATPVFLISLKAGGTGLNLT-SAEVVIHFDPWWNVSAQNQ-----ATDRAYRIGQ 1022

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V V  LIA++TI+E ++     K  + D ++
Sbjct: 1023 HNNVQVVKLIAKDTIEEKIMHLQELKQDLSDSII 1056


>gi|239983620|ref|ZP_04706144.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 956

 Score = 38.1 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + +G++P+      + G GLNL    ++ V    WW+       +E     R  + G
Sbjct: 842 VRRFQDGEVPVFLLSLKAAGTGLNLTRAEHV-VHVDRWWN-----PAVEAQATDRAYRIG 895

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ ++ + TI++ + + L  K  + D +L  
Sbjct: 896 QTRPVQVHRIVTEGTIEDRIAELLVRKQALADAVLTG 932


>gi|300709133|ref|XP_002996734.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
 gi|239606056|gb|EEQ83063.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
          Length = 1243

 Score = 38.1 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N G IP+LF      G GLNL  G + ++F+   W+     Q ++     R  + G K
Sbjct: 1136 DFNTGNIPILFLTTHIGGLGLNLT-GADTVIFYEHDWNPFNDLQAMD-----RAHRIGQK 1189

Query: 163  RAVFVYYLIAQNTIDELVL 181
              V V+ LI +++I+E V+
Sbjct: 1190 NTVNVFRLITKDSIEEKVM 1208


>gi|157870081|ref|XP_001683591.1| DNA repair and recombination protein RAD54 [Leishmania major strain
           Friedlin]
 gi|68126657|emb|CAJ04466.1| putative DNA repair and recombination protein RAD54 [Leishmania
           major strain Friedlin]
          Length = 1127

 Score = 38.1 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  TI+E 
Sbjct: 874 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKCVFIYRLLSTGTIEEK 927

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 928 IYQRQVSK 935


>gi|46190976|ref|ZP_00120784.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
            [Bifidobacterium longum DJO10A]
          Length = 1062

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G
Sbjct: 938  VDQFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIG 991

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V VY ++A++TI+E +L+   TKS +
Sbjct: 992  QTEDVNVYQVVAKDTIEERILELQHTKSEL 1021


>gi|325841031|ref|ZP_08167240.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
 gi|325490097|gb|EGC92440.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
          Length = 1080

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T D+   T +++N+    +      + G GLNL  G ++++ +  WW++    Q     
Sbjct: 959  KTSDRLALT-EQFNQDDTKVFLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQNQ----- 1011

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
               R  + G  + V V+ L+ +NTI+E +
Sbjct: 1012 ATDRAHRLGQDKTVQVFKLMVKNTIEERI 1040


>gi|309363526|emb|CAP26346.2| hypothetical protein CBG_06016 [Caenorhabditis briggsae AF16]
          Length = 1380

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNLQ    +++F S W     HQ M       R  + G K+ V V  L
Sbjct: 963  LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRAHRIGQKKEVRVLRL 1016

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I  N+++E +L   R K  + + ++ A K
Sbjct: 1017 ITANSVEEKILAAARYKLNVDEKVIQAGK 1045


>gi|47208011|emb|CAF91219.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 454

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           L      + G G+NL     +++F S W    DL+  Q    RIG T+         V V
Sbjct: 306 LFLLSTRAGGLGINLTAADTVIIFDSDWNPQADLQA-QDRCHRIGQTK--------PVVV 356

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y L+  NTID+ +L+R   K  ++ +++
Sbjct: 357 YRLVTANTIDQKILERASNKRKLEQMVI 384


>gi|260942759|ref|XP_002615678.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
 gi|238850968|gb|EEQ40432.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
          Length = 1563

 Score = 38.1 bits (87), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI +++I+
Sbjct: 1104 AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITEDSIE 1157

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E+VL+R   K  I   ++ A K
Sbjct: 1158 EMVLERAVAKLEIDGKVIQAGK 1179


>gi|293375830|ref|ZP_06622099.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
 gi|292645538|gb|EFF63579.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
          Length = 1080

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T D+   T +++N+    +      + G GLNL  G ++++ +  WW++    Q     
Sbjct: 959  KTSDRLALT-EQFNQDDTKVFLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQNQ----- 1011

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
               R  + G  + V V+ L+ +NTI+E +
Sbjct: 1012 ATDRAHRLGQDKTVQVFKLMVKNTIEERI 1040


>gi|291221939|ref|XP_002730974.1| PREDICTED: helicase, lymphoid specific-like [Saccoglossus
           kowalevskii]
          Length = 905

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N  K   +F      G  GLNL     ++++ S W    + Q         R  + 
Sbjct: 723 ISTFNNDKDAFIFLLSTRAGGLGLNLASADTVIIYDSDWNPQSDLQ------AQDRCHRI 776

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  + V V+ L+ QNTID+ +++R   K  ++ +++
Sbjct: 777 GQNKPVTVFRLVTQNTIDQKIVERASAKRKLEKMVI 812


>gi|154270293|ref|XP_001536002.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410016|gb|EDN05404.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 884

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +L A    C  GLNL    N ++    WW      Q ++R+      + G KR 
Sbjct: 780 NDSNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV-----YRLGQKRP 833

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             ++ L+ +N+I++ VL + + K   +D
Sbjct: 834 TTIWRLVMENSIEDRVLDKQKEKHRKRD 861


>gi|92116907|ref|YP_576636.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91799801|gb|ABE62176.1| helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 928

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E  I L+ A  A+C  GLNLQ  G  L+   L W+    +Q I RI    QR+       
Sbjct: 759 ERTIRLIVATDAAC-EGLNLQTLGT-LINVDLPWNPSRLEQRIGRIKRFGQRRDRVDMLN 816

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            +Y+  AQ T+DE V  +L ++
Sbjct: 817 LLYHGSAQPTVDEKVYAKLSSR 838


>gi|195119131|ref|XP_002004085.1| GI19521 [Drosophila mojavensis]
 gi|193914660|gb|EDW13527.1| GI19521 [Drosophila mojavensis]
          Length = 1865

 Score = 38.1 bits (87), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++     W+    QQ I RI      + G K+  ++Y LIA  T++E 
Sbjct: 315 GQGINLT-GANRVIILDTSWNPSNDQQNIFRI-----FRLGQKKNCYIYRLIAMGTMEEK 368

Query: 180 VLQRLRTK 187
           V  R  TK
Sbjct: 369 VYSRSVTK 376


>gi|66821527|ref|XP_644229.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60472422|gb|EAL70375.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1400

 Score = 38.1 bits (87), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 22/81 (27%)

Query: 113  FAHPASC----------GHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQA 159
            F + ASC          G GL L    N++VF  L+W    L + +  I RIG T+    
Sbjct: 1064 FQNNASCKVALLSITAAGTGLTLT-ASNLVVFVELYWTPGVLRQAEDRIHRIGQTK---- 1118

Query: 160  GFKRAVFVYYLIAQNTIDELV 180
                  +++YLI +NT+D+ +
Sbjct: 1119 ----TCYIHYLIGKNTLDDRI 1135


>gi|328862601|gb|EGG11702.1| hypothetical protein MELLADRAFT_115234 [Melampsora larici-populina
           98AG31]
          Length = 1138

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 101 IQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N EG    +F      G  G+NL    +I+V F   W+ +   Q ++R       +
Sbjct: 574 IDEYNKEGSSKFIFLLTTRAGGLGINLTTA-DIVVLFDSDWNPQADLQAMDRA-----HR 627

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+ V+V+  + +N ++E VL+R   K  +  L++
Sbjct: 628 IGQKKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVI 664


>gi|254586199|ref|XP_002498667.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
 gi|238941561|emb|CAR29734.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
          Length = 1651

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI QN+++
Sbjct: 1116 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVKILRLITQNSVE 1169

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L++   K  I   ++ A K
Sbjct: 1170 EVILEKAHKKLDIDGKVIQAGK 1191


>gi|301768186|ref|XP_002919520.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Ailuropoda melanoleuca]
          Length = 838

 Score = 37.7 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 668 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 721

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 722 IFQRQSHKKALSSCVVD 738


>gi|114556131|ref|XP_513146.2| PREDICTED: RAD54-like protein [Pan troglodytes]
          Length = 901

 Score = 37.7 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 731 GCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIEEK 784

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 785 IFQRQSHKKALSSCVVD 801


>gi|268536304|ref|XP_002633287.1| Hypothetical protein CBG06016 [Caenorhabditis briggsae]
          Length = 1369

 Score = 37.7 bits (86), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNLQ    +++F S W     HQ M       R  + G K+ V V  L
Sbjct: 956  LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRAHRIGQKKEVRVLRL 1009

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I  N+++E +L   R K  + + ++ A K
Sbjct: 1010 ITANSVEEKILAAARYKLNVDEKVIQAGK 1038


>gi|324526853|gb|ADY48722.1| Transcription activator BRG1 [Ascaris suum]
          Length = 245

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     HQ M       R  + G  R V V  L+  N+I+
Sbjct: 32  AGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRAHRIGQSREVRVLRLVTVNSIE 85

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L   R K  + + ++ A K
Sbjct: 86  EKILAAARYKLNVDEKVIQAGK 107


>gi|213402947|ref|XP_002172246.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000293|gb|EEB05953.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
          Length = 749

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G N L+ F   W+     Q + RI      + G  R+V +Y L++   +D
Sbjct: 533 SGGAGLNL-VGANRLILFEPSWNPAYDLQALGRI-----YRYGQNRSVLIYTLLSTGMLD 586

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +  R  TK+ + +  +++
Sbjct: 587 EQIYIRQHTKTGLSNAFMDS 606


>gi|156086846|ref|XP_001610830.1| chromo-helicase DNA-binding protein [Babesia bovis T2Bo]
 gi|154798083|gb|EDO07262.1| chromo-helicase DNA-binding protein, putative [Babesia bovis]
          Length = 1729

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++++ S W    + Q         R  + G  + V +Y L+ +++I++ 
Sbjct: 1120 GLGINLTTADTVIIYDSDWNPQNDLQ------AEARAHRIGQTKTVQIYRLVTKDSIEQT 1173

Query: 180  VLQRLRTKSTIQDLLLNALKKE 201
            +L+R +TK  +  L++  L K+
Sbjct: 1174 ILERAKTKMVLDALVVQGLNKK 1195


>gi|329764968|ref|ZP_08256555.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138505|gb|EGG42754.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 574

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I ++ +G+  L+ A   +   G+NL      ++F  L W    H+Q  +R+      + G
Sbjct: 459 IDKFQKGESKLMIAGLRAGNVGINLTRA-KYVIFAELDWSPAIHRQAEDRL-----HRIG 512

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  VF YYLI   T+D+ V   L  KS   D +++
Sbjct: 513 QKNTVFAYYLIGNGTLDDHVANILVDKSYEIDSIMD 548


>gi|209945988|gb|ACI97225.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 97  LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 150

Query: 171 IAQNTIDELVLQR 183
           +A  +I+E +LQR
Sbjct: 151 VASGSIEEKILQR 163


>gi|159109590|ref|XP_001705059.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
 gi|157433137|gb|EDO77385.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
          Length = 1367

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N ++ F+  W L+  +Q      + R  + G K  V VY L   NT++E ++
Sbjct: 739 GLNLT-GANRVILFAPAWSLQVEEQ-----AIARAYRMGQKHNVVVYKLACINTLEEKMV 792

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
            R   K+ I ++ L+  K  ++
Sbjct: 793 VRQLQKAGIANVTLDDEKHRSV 814


>gi|331245961|ref|XP_003335615.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309314605|gb|EFP91196.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 894

 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 101 IQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N EG    +F      G  G+NL    +I+V F   W+ +   Q ++R       +
Sbjct: 397 IDEYNKEGSSKFVFLLTTRAGGLGINLTTA-DIVVLFDSDWNPQADLQAMDRA-----HR 450

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+ V+V+  + +N ++E VL+R   K  +  L++
Sbjct: 451 IGQKKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVI 487


>gi|221369955|ref|YP_002521051.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
 gi|221163007|gb|ACM03978.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
          Length = 990

 Score = 37.7 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMI---ERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           GLNL +  + ++FFSL W+++   Q+I   +R+G T +R+ G +R + ++ ++ + +
Sbjct: 445 GLNLHHVADGIIFFSLPWEIDSIDQLIGRVDRLGATGERKGG-RRVIDIWRILIEGS 500


>gi|119385698|ref|YP_916753.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119376293|gb|ABL71057.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 634

 Score = 37.7 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMI---ERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           GLNL +  + ++FFSL W+++   Q+I   +R+G T +R+ G +R + ++ ++ + +
Sbjct: 89  GLNLHHVADGIIFFSLPWEIDSIDQLIGRVDRLGATGERKGG-RRVIDIWRILIEGS 144


>gi|209945942|gb|ACI97202.1| okra [Drosophila simulans]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 97  LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 150

Query: 171 IAQNTIDELVLQR 183
           +A  +I+E +LQR
Sbjct: 151 VASGSIEEKILQR 163


>gi|209945934|gb|ACI97198.1| okra [Drosophila simulans]
 gi|209945936|gb|ACI97199.1| okra [Drosophila simulans]
 gi|209945938|gb|ACI97200.1| okra [Drosophila melanogaster]
 gi|209945940|gb|ACI97201.1| okra [Drosophila simulans]
 gi|209945944|gb|ACI97203.1| okra [Drosophila melanogaster]
 gi|209945946|gb|ACI97204.1| okra [Drosophila melanogaster]
 gi|209945948|gb|ACI97205.1| okra [Drosophila melanogaster]
 gi|209945950|gb|ACI97206.1| okra [Drosophila melanogaster]
 gi|209945952|gb|ACI97207.1| okra [Drosophila melanogaster]
 gi|209945954|gb|ACI97208.1| okra [Drosophila melanogaster]
 gi|209945956|gb|ACI97209.1| okra [Drosophila melanogaster]
 gi|209945958|gb|ACI97210.1| okra [Drosophila melanogaster]
 gi|209945962|gb|ACI97212.1| okra [Drosophila melanogaster]
 gi|209945964|gb|ACI97213.1| okra [Drosophila melanogaster]
 gi|209945966|gb|ACI97214.1| okra [Drosophila melanogaster]
 gi|209945968|gb|ACI97215.1| okra [Drosophila melanogaster]
 gi|209945970|gb|ACI97216.1| okra [Drosophila melanogaster]
 gi|209945972|gb|ACI97217.1| okra [Drosophila melanogaster]
 gi|209945974|gb|ACI97218.1| okra [Drosophila melanogaster]
 gi|209945976|gb|ACI97219.1| okra [Drosophila melanogaster]
 gi|209945978|gb|ACI97220.1| okra [Drosophila melanogaster]
 gi|209945980|gb|ACI97221.1| okra [Drosophila melanogaster]
 gi|209945982|gb|ACI97222.1| okra [Drosophila melanogaster]
 gi|209945984|gb|ACI97223.1| okra [Drosophila melanogaster]
 gi|209945986|gb|ACI97224.1| okra [Drosophila melanogaster]
 gi|209945990|gb|ACI97226.1| okra [Drosophila melanogaster]
 gi|209945992|gb|ACI97227.1| okra [Drosophila melanogaster]
 gi|209945996|gb|ACI97229.1| okra [Drosophila melanogaster]
 gi|209945998|gb|ACI97230.1| okra [Drosophila melanogaster]
 gi|209946000|gb|ACI97231.1| okra [Drosophila melanogaster]
 gi|209946002|gb|ACI97232.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 97  LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 150

Query: 171 IAQNTIDELVLQR 183
           +A  +I+E +LQR
Sbjct: 151 VASGSIEEKILQR 163


>gi|316932603|ref|YP_004107585.1| helicase domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600317|gb|ADU42852.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 956

 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T D     ++++ E  +P+L +  A  G GLN+    +IL+ + L W+     ++ +R
Sbjct: 563 GHTADDKRAAVEKF-EDDVPVLISTEAG-GEGLNMHRNCHILINYDLPWN---PSRISQR 617

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           IG  R  + G K+ V V+   A++TID  +L
Sbjct: 618 IG--RLYRYGQKQRVIVFNFHAKDTIDNEIL 646


>gi|261420703|ref|YP_003254385.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|319768373|ref|YP_004133874.1| SNF2-related protein [Geobacillus sp. Y412MC52]
 gi|261377160|gb|ACX79903.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|317113239|gb|ADU95731.1| SNF2-related protein [Geobacillus sp. Y412MC52]
          Length = 924

 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 808 VDEFQAKKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWN-----PAVENQATDRAYRIG 861

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + DL+
Sbjct: 862 QTKFVHVHKLITIGTIEEKIDEMLEQKQALADLI 895


>gi|330804383|ref|XP_003290175.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
 gi|325079732|gb|EGC33319.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
          Length = 1134

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL     +L+F   W         I+   V R  + G KR V VY LI   TI+E + 
Sbjct: 744 GLNLTSADRVLIFDPSW-------NTIDNQAVDRAYRIGQKRDVVVYRLITCGTIEEKIY 796

Query: 182 QRLRTKSTIQDLLLN 196
           ++   K ++   +LN
Sbjct: 797 RKQVFKGSLMKTMLN 811


>gi|134114696|ref|XP_774056.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256686|gb|EAL19409.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1514

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S +    + Q M       R  + G +R V ++ L+++ TI+
Sbjct: 834 AGGLGINLETADTVIIFDSDYNPQNDLQAM------ARAHRIGQQRHVSIFRLVSKGTIE 887

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E +L+R   K  ++  ++N +     H+
Sbjct: 888 EDILERAMRKMLLEYAIINKMDTTGAHI 915


>gi|322707430|gb|EFY99008.1| DNA repair and recombination protein RAD5B [Metarhizium anisopliae
           ARSEF 23]
          Length = 769

 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ +  ++ A  A C  GLNL    + ++    WW      Q I+R+      + G  R 
Sbjct: 662 NDAETRVMLASLAVCSVGLNL-VSADTVILSDSWWAPAIEDQAIDRV-----HRLGQTRK 715

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ LI + T++E VL   + K   +DL+  A +++
Sbjct: 716 TTVWRLIVEGTVEERVLDVQKEK---RDLVTKAFQEK 749


>gi|291233872|ref|XP_002736874.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Saccoglossus kowalevskii]
          Length = 678

 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV F   W+     Q + R+      + G K+  ++Y L++  TI+E 
Sbjct: 512 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKKQCYIYRLLSTGTIEEK 565

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 566 IFQRQAHKKALSSCVVD 582


>gi|313898327|ref|ZP_07831864.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312956709|gb|EFR38340.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 377

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E  +P +     + G GLNL    N ++ F  WW+       +E     R  + G K+ V
Sbjct: 269 EAYVPYIVLSLKAAGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAFRIGQKKNV 322

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            V+ LI++ T++E + + +++K
Sbjct: 323 IVHKLISKGTVEEKIDELIKSK 344


>gi|115921268|ref|XP_787494.2| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115974812|ref|XP_001181201.1| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 629

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + L+ + + W+     Q + R+      + G K+ V++Y LI   TI+E 
Sbjct: 495 GVGLNL-IGASRLLLYDIDWNPANDLQAMARVW-----RDGQKKTVYIYRLITAGTIEEK 548

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + QR  +K ++   +++A
Sbjct: 549 IYQRQISKQSLSGAVVDA 566


>gi|226943915|ref|YP_002798988.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
 gi|226718842|gb|ACO78013.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
          Length = 1357

 Score = 37.7 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A+NTI+E 
Sbjct: 1267 GTGLNLT-AADYVIHLDPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEER 1320

Query: 180  VLQRLRTKSTIQDLLL 195
            +L     K  + D LL
Sbjct: 1321 ILALHGQKRDLADSLL 1336


>gi|321261786|ref|XP_003195612.1| chromodomain helicase [Cryptococcus gattii WM276]
 gi|317462086|gb|ADV23825.1| Chromodomain helicase, putative [Cryptococcus gattii WM276]
          Length = 1502

 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S +    + Q M       R  + G +R V ++ L+++ TI+
Sbjct: 822 AGGLGINLETADTVIIFDSDYNPQNDLQAM------ARAHRIGQQRHVSIFRLVSKGTIE 875

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E +L+R   K  ++  ++N +     H+
Sbjct: 876 EDILERAMRKMLLEYAIINKMDTTGAHI 903


>gi|209945994|gb|ACI97228.1| okra [Drosophila melanogaster]
          Length = 167

 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 96  LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 149

Query: 171 IAQNTIDELVLQR 183
           +A  +I+E +LQR
Sbjct: 150 VASGSIEEKILQR 162


>gi|50549907|ref|XP_502425.1| YALI0D04961p [Yarrowia lipolytica]
 gi|74689630|sp|Q6CA87|SWR1_YARLI RecName: Full=Helicase SWR1
 gi|49648293|emb|CAG80613.1| YALI0D04961p [Yarrowia lipolytica]
          Length = 1772

 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + KIP+      S G G+NL  G + ++F+   W+    +Q  +R       + G  R 
Sbjct: 1533 TDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPSMDKQCQDRC-----HRIGQTRD 1586

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1587 VHIYRFVSEHTIESNILKKANQKQILDNVVI 1617


>gi|321252272|ref|XP_003192348.1| hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
 gi|317458816|gb|ADV20561.1| Hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
          Length = 1283

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 59   LEVIIEKANAAPIIVAYHFNS--DLARL---QKAFPQGRTL-----DKDPCTIQEWN--- 105
            ++ IIE+  +  IIV   F    DL  +   ++  P  + +     D+   TI+ +N   
Sbjct: 1110 IDAIIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKNFNRPM 1169

Query: 106  -EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E K P        CG  GLNL    +++     W    E+Q       V R  + G  R
Sbjct: 1170 EEDKSPRCLLMSLKCGGVGLNLCIANHVICLDLAWNAATENQ------AVDRAHRIGQTR 1223

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1224 EVVVHRLVVENTIDQRLMELQQQKQALSD 1252


>gi|34495520|ref|NP_899735.1| SWI/SNF family helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101375|gb|AAQ57744.1| probable SWI/SNF family helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 910

 Score = 37.7 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + ++    WW+       +E     R  + G +R V VY L+A  TI+E 
Sbjct: 818 GTGLNLT-AADYVIHLDPWWN-----PAVEDQASDRAYRMGQQRPVTVYRLVAAGTIEEK 871

Query: 180 VLQRLRTKSTIQDLLL 195
           +++  R K  + D LL
Sbjct: 872 IVELHRDKRALADSLL 887


>gi|32475836|ref|NP_868830.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
 gi|32446379|emb|CAD76207.1| probable swi/snf family helicase 2 [Rhodopirellula baltica SH 1]
          Length = 1386

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            K   ++  + +G+  +      + G GLNL    + ++    WW+       +E     R
Sbjct: 1274 KRKTSVDAFQDGEGDVFLISLKAGGVGLNLT-AADYVIHMDPWWN-----PAVEDQASDR 1327

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G +R V VY  I   TI+E +LQ   +K  + D LL  
Sbjct: 1328 AHRMGQQRPVTVYRFITTGTIEERILQLHESKRDLADSLLEG 1369


>gi|320581375|gb|EFW95596.1| hypothetical protein HPODL_2930 [Pichia angusta DL-1]
          Length = 687

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQ 158
           I  ++  ++ +      + G GLNL    ++++F S W    + Q M  + RIG T    
Sbjct: 517 IDRFSTEEVDVFLLSTRAGGLGLNLTAADSVILFDSDWNPQVDLQAMDRVHRIGQT---- 572

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + V VY L+  NT++E++L +  +K  ++ L++
Sbjct: 573 ----KPVSVYRLVIANTVEEIMLAKADSKRRLERLVI 605


>gi|307180292|gb|EFN68325.1| Lymphoid-specific helicase [Camponotus floridanus]
          Length = 773

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+  + L      + G GLNL     ++++ S W    + Q M       R  + G  + 
Sbjct: 627 NDPNVFLFLISTRAGGVGLNLASADTVIIYDSDWNPQADIQAM------ARCHRIGQTKP 680

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V VY L  + T+DE +++R   K  ++ ++++
Sbjct: 681 VVVYRLCTRGTVDETIIKRSEAKRILEKVVIS 712


>gi|190348945|gb|EDK41499.2| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 639 EGQEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALARVW-----RDGQKKDC 692

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 693 FIYRFISTGTIEEKIFQRQSMKLSLSSCVVD 723


>gi|126643947|ref|XP_001388153.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
 gi|126117230|gb|EAZ51330.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
          Length = 807

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++   ++PL      + G GLNL    ++++      DL+ + Q IE+    R  + G
Sbjct: 712 IEKFQTTQVPLFLLSTKAAGQGLNLTVASSVIMM-----DLDYNPQ-IEKQAEDRVHRIG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + V ++ L+ ++TI+E +    ++K T+ +
Sbjct: 766 QSKQVKIFKLVCKDTIEENIFNCCQSKLTLDN 797


>gi|66827541|ref|XP_647125.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475296|gb|EAL73231.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1159

 Score = 37.7 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      S G G+NL    N+++F+ L ++ +     ++R    R  + G +R V +Y
Sbjct: 1053 IPVFLLSTNSGGLGINLTCA-NVVIFYDLSFNPQ-----VDRQAEDRAHRLGQEREVIIY 1106

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             L+A+NT+D  + +    K  + D +L
Sbjct: 1107 KLLAENTVDINIHESANQKKKLNDNVL 1133


>gi|291547356|emb|CBL20464.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus sp.
            SR1/5]
          Length = 1130

 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +NE    +      + G GLNL    +I++ +  WW+L    Q  +R       + G
Sbjct: 1021 VHAFNEDDTSVFCISLKAGGTGLNLT-AADIVIHYDPWWNLAVQNQATDR-----AHRIG 1074

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V VY L  ++TI+E +      K  + D +LN 
Sbjct: 1075 QQNVVSVYRLFMKDTIEERIRALQERKRELADEILNG 1111


>gi|67624283|ref|XP_668424.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis TU502]
 gi|54659629|gb|EAL38197.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis]
          Length = 807

 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++   ++PL      + G GLNL    ++++      DL+ + Q IE+    R  + G
Sbjct: 712 IEKFQTTQVPLFLLSTKAAGQGLNLTVASSVIMM-----DLDYNPQ-IEKQAEDRVHRIG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + V ++ L+ ++TI+E +    ++K T+ +
Sbjct: 766 QSKQVKIFKLVCKDTIEENIFNCCQSKLTLDN 797


>gi|328354133|emb|CCA40530.1| hypothetical protein PP7435_Chr4-0362 [Pichia pastoris CBS 7435]
          Length = 689

 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 100 TIQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           T++E+NE     +      CG  GLNL    N +V +  WW+ +   Q I+R+      +
Sbjct: 607 TLKEFNENPETTVLLCSLKCGAIGLNLTIA-NRVVIYDPWWNPQVEDQAIDRV-----YR 660

Query: 159 AGFKRAVFVYYLIAQNTIDE 178
            G  + V VY LI +++++E
Sbjct: 661 FGQTKEVDVYRLIIKDSVEE 680


>gi|58271342|ref|XP_572827.1| transcription regulator [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229086|gb|AAW45520.1| transcription regulator, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1519

 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL+    +++F S +    + Q M       R  + G +R V ++ L+++ TI+
Sbjct: 839 AGGLGINLETADTVIIFDSDYNPQNDLQAM------ARAHRIGQQRHVSIFRLVSKGTIE 892

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E +L+R   K  ++  ++N +     H+
Sbjct: 893 EDILERAMRKMLLEYAIINKMDTTGAHI 920


>gi|289580072|ref|YP_003478538.1| helicase [Natrialba magadii ATCC 43099]
 gi|289529625|gb|ADD03976.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 584

 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   G NLQ+  N+LV   L W+    +Q   RIG  R  + G KR VF++ + 
Sbjct: 434 ILVSTDAMSEGRNLQFC-NLLVNMDLPWNPMRVEQ---RIG--RVHRIGQKRDVFIFNMA 487

Query: 172 AQNTIDELVLQRL 184
            ++T++E VL+RL
Sbjct: 488 LKDTVEEYVLERL 500


>gi|22326612|ref|NP_196132.2| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|20260624|gb|AAM13210.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
 gi|31711770|gb|AAP68241.1| At5g05130 [Arabidopsis thaliana]
 gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis thaliana]
          Length = 862

 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL     +   F  WW+    +Q ++RI      + G K+ V +  +
Sbjct: 762 VLLASLKASGTGINLTAASRVY-LFDPWWNPAVEEQAMDRI-----HRIGQKQEVKMIRM 815

Query: 171 IAQNTIDELVLQ 182
           IA+N+I+E VL+
Sbjct: 816 IARNSIEERVLE 827


>gi|320006862|gb|ADW01712.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 992

 Score = 37.7 bits (86), Expect = 1.00,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  + +    +  +  G++P+      + G GLNL    ++ V    WW+       +E 
Sbjct: 868 GTPIAEREAMVDRFQAGRVPVFLLSLKAAGTGLNLTRAEHV-VHVDRWWN-----PAVEA 921

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G  R V V+ LI + TI++ +   L  K  + D +L
Sbjct: 922 QATDRAYRIGQTRPVQVHRLITEGTIEDRIAAMLARKQGLADAVL 966


>gi|228904537|ref|ZP_04068620.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
 gi|228855101|gb|EEM99677.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
          Length = 413

 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 20/195 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA     Y+E K         ++ ++ 
Sbjct: 229 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGS---YNEHK---------LQYIKD 276

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IE  N   II+ Y+F  +   L     +   T++ D   +  + +    +      +  
Sbjct: 277 LIESTNDR-IIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGA 335

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +V+F+L     +  ++ E+    R  + G KR  F YYL+   +I+  +
Sbjct: 336 MGLNLQ-KANKIVYFTL----TDKSELFEQ-SKKRTHRIGQKRPCFYYYLLTDGSIEWRM 389

Query: 181 LQRLRTKSTIQDLLL 195
           L  L+ +    D L 
Sbjct: 390 LDVLKERRDYTDALF 404


>gi|25144179|ref|NP_498468.2| yeast ISW (imitation SWI) homolog family member (isw-1)
           [Caenorhabditis elegans]
 gi|21264515|sp|P41877|ISW1_CAEEL RecName: Full=Chromatin-remodeling complex ATPase chain isw-1;
           AltName: Full=Nucleosome-remodeling factor subunit isw-1
 gi|16950408|gb|AAA50636.2| Yeast isw (imitation swi) homolog protein 1 [Caenorhabditis
           elegans]
          Length = 1009

 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G K+ V V+ LI +NT+D
Sbjct: 513 AGGLGINLATADVVIIYDSDWNPQSDLQAM------DRAHRIGQKKQVRVFRLITENTVD 566

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E ++++   K  + ++++
Sbjct: 567 ERIIEKAEAKLRLDNIVI 584


>gi|330841728|ref|XP_003292844.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
 gi|325076886|gb|EGC30638.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
          Length = 931

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 12/67 (17%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            + G GL L    N++VF  L+W    L + +  + RIG T+         V+++YLI +
Sbjct: 169 TAAGTGLTLT-ASNLVVFVELYWTPGVLRQAEDRVHRIGQTKD--------VYIHYLIGK 219

Query: 174 NTIDELV 180
           NT+D+ +
Sbjct: 220 NTLDDRI 226


>gi|308198272|ref|XP_001386950.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Scheffersomyces stipitis CBS 6054]
 gi|149388940|gb|EAZ62927.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Pichia stipitis CBS 6054]
          Length = 821

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N L+     W+    QQ + R+      + G K+  F+Y  I+  TI+E 
Sbjct: 660 GCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDCFIYRFISTGTIEEK 713

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K ++   +++
Sbjct: 714 IFQRQSMKMSLSSCVVD 730


>gi|158320075|ref|YP_001512582.1| non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
 gi|158140274|gb|ABW18586.1| Non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
          Length = 1085

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N+G   +      + G GLNL  G ++++ F  WW+       +E     R  + G
Sbjct: 975  VSDFNKGNSDVFLISLKAGGTGLNLT-GADMVIHFDPWWN-----PAVEEQATDRAYRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + +V V  LI + TI+E + +    K  + D ++
Sbjct: 1029 QQNSVHVMKLITKGTIEEKIAKLQERKRELIDAVI 1063


>gi|221508291|gb|EEE33878.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 998

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+  + +L     + G GLNLQ    I      WW+     Q I+R     QR     + 
Sbjct: 892 NDPSLKVLLISLKAGGEGLNLQIASRIF-LMDPWWNPAAEMQAIQRAHRIGQRH----KE 946

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 947 VIAIRFIAEKTIEERILQLQEKKQLVFDGTVGA 979


>gi|325982657|ref|YP_004295059.1| helicase domain-containing protein [Nitrosomonas sp. AL212]
 gi|325532176|gb|ADZ26897.1| helicase domain protein [Nitrosomonas sp. AL212]
          Length = 934

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ   +I+V F L W+     ++++R+G  R  + G KR V V+ + A  T+D
Sbjct: 586 AGGEGINLQRNCHIIVNFDLPWN---PMRLVQRVG--RLYRYGQKRKVIVFNMHAPQTLD 640

Query: 178 ELVLQRL--RTKSTIQDL 193
             ++Q L  R    + D+
Sbjct: 641 ADIMQMLYFRISQVVLDM 658


>gi|322499392|emb|CBZ34465.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1126

 Score = 37.7 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  TI+E 
Sbjct: 873 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSTGTIEEK 926

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 927 IYQRQVSK 934


>gi|322492128|emb|CBZ27402.1| DNA repair and recombination protein RAD54,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1130

 Score = 37.7 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  TI+E 
Sbjct: 880 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSTGTIEEK 933

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 934 IYQRQVSK 941


>gi|146087788|ref|XP_001465905.1| DNA repair and recombination protein RAD54 [Leishmania infantum
           JPCM5]
 gi|134070006|emb|CAM68336.1| putative DNA repair and recombination protein RAD54 [Leishmania
           infantum JPCM5]
          Length = 1126

 Score = 37.7 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  TI+E 
Sbjct: 873 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSTGTIEEK 926

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 927 IYQRQVSK 934


>gi|154338237|ref|XP_001565343.1| DNA repair and recombination protein RAD54 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062392|emb|CAM42253.1| putative DNA repair and recombination protein RAD54 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1126

 Score = 37.7 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  TI+E 
Sbjct: 874 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSTGTIEEK 927

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 928 IYQRQVSK 935


>gi|60390959|sp|Q9FF61|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1; Short=SMARCA3-like protein 1
 gi|10178052|dbj|BAB11535.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
          Length = 881

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL     +   F  WW+    +Q ++RI      + G K+ V +  +
Sbjct: 781 VLLASLKASGTGINLTAASRVY-LFDPWWNPAVEEQAMDRI-----HRIGQKQEVKMIRM 834

Query: 171 IAQNTIDELVLQ 182
           IA+N+I+E VL+
Sbjct: 835 IARNSIEERVLE 846


>gi|302698345|ref|XP_003038851.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
 gi|300112548|gb|EFJ03949.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
          Length = 1135

 Score = 37.7 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+     Q I+R+      + G ++ VFV + I  +TI+  
Sbjct: 1042 GVGLNLT-NANYVFMMDCWWNAATENQAIDRV-----HRLGQEKPVFVKHFIISDTIEGR 1095

Query: 180  VLQRLRTKSTI 190
            +LQ  + K+ I
Sbjct: 1096 ILQIQKRKTAI 1106


>gi|282890240|ref|ZP_06298770.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499897|gb|EFB42186.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 883

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 18/142 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           D  ++ LE + E+   A  +V   F S L  + K F +         G T +++    Q 
Sbjct: 721 DVLMQDLETLAEEGKKA--LVYSQFTSMLGLIAKEFQKRGWNFVYLDGSTHNREKVVTQF 778

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +  IP       + G GLNL    + +  F  WW+     + IE   + R  + G + 
Sbjct: 779 QEDASIPFFLISLKAGGVGLNLT-SADYVYLFDPWWN-----EAIENQAIDRAHRIGRQD 832

Query: 164 AVFVYYLIAQNTIDELVLQRLR 185
            V    LIA  +I+E + Q+L+
Sbjct: 833 TVIAKRLIAIESIEEKI-QKLK 853


>gi|299756460|ref|XP_001829349.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
 gi|298411686|gb|EAU92309.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
          Length = 1155

 Score = 37.7 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+     Q I+R+      + G ++ V+V + +  NTI+  
Sbjct: 1061 GVGLNLT-AANHVFMMDCWWNAATENQAIDRV-----HRIGQEKTVYVKHFVISNTIEGR 1114

Query: 180  VLQRLRTKSTI 190
            +LQ  + K+ I
Sbjct: 1115 ILQIQKRKTAI 1125


>gi|255728815|ref|XP_002549333.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
 gi|240133649|gb|EER33205.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
          Length = 847

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV     W+    QQ + R+      + G K+  F+Y  I+  TI+E 
Sbjct: 685 GCGINL-IGANRLVLIDPDWNPASDQQALARVW-----RDGQKKDCFIYRFISTGTIEEK 738

Query: 180 VLQR 183
           + QR
Sbjct: 739 IFQR 742


>gi|67483974|ref|XP_657207.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474451|gb|EAL51818.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 955

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+  GK+ +      S G G+NLQ    ++++ S W    + Q M       R  +
Sbjct: 466 IKDFNDPNGKVSIFLLSTRSGGLGINLQSADTVILYDSDWNPQSDIQAM------DRAHR 519

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V VY LI + T ++ +++    K  +  L++ + K  T
Sbjct: 520 IGQTKPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGKTAT 563


>gi|211997722|gb|ACJ14807.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKD 50


>gi|211997714|gb|ACJ14802.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211997717|gb|ACJ14804.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKD 50


>gi|296111469|ref|YP_003621851.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
 gi|295833001|gb|ADG40882.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
          Length = 616

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQR 157
           I  + +G +P+L ++PA+ G  ++L    +  V+F   ++L    + +  I R+G+   +
Sbjct: 497 INNFRDGNVPVLISNPATLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRIHRLGLPDNQ 556

Query: 158 QAGFKRAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
              +      YYL+ +        ID+ V +RL+ K  I   +LNA+  + +
Sbjct: 557 YTRY------YYLMTEGDHAHNGYIDQQVYERLKEKEII---MLNAIDGDML 599


>gi|170594229|ref|XP_001901866.1| BRM protein [Brugia malayi]
 gi|158590810|gb|EDP29425.1| BRM protein, putative [Brugia malayi]
          Length = 1412

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ M  +    R  + G  R V V  L+  N+I+
Sbjct: 981  AGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQSREVRVLRLVTVNSIE 1034

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L   R K  + + ++ A K
Sbjct: 1035 EKILAAARYKLNVDEKVIQAGK 1056


>gi|308475524|ref|XP_003099980.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
 gi|308266032|gb|EFP09985.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
          Length = 1429

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNLQ    +++F S W     HQ M  +    R  + G K+ V V  L
Sbjct: 875 LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKKEVRVLRL 928

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           I  N+++E +L   R K  + + ++ A K
Sbjct: 929 ITANSVEEKMLAVARYKLNVDEKVIQAGK 957


>gi|268553029|ref|XP_002634497.1| Hypothetical protein CBG08287 [Caenorhabditis briggsae]
          Length = 1480

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ M  +    R  + G K+ V V  LI  N+++
Sbjct: 926  AGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKKEVRVLRLITANSVE 979

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L   R K  + + ++ A K
Sbjct: 980  EKMLAVARYKLNVDEKVIQAGK 1001


>gi|326431585|gb|EGD77155.1| CHD1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1497

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 101 IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++E+N  + +I +      + G GLNLQ    +++F S W     HQ +       R  +
Sbjct: 855 VKEFNSPDSQIDVFVLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDL---QAQDRAHR 908

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K  V V+ L + N+++E +L+  R K  + + ++ A
Sbjct: 909 IGQKNEVRVFRLCSINSVEETILEAARFKLNVDEKVIQA 947


>gi|294659015|ref|XP_002770883.1| DEHA2F23188p [Debaryomyces hansenii CBS767]
 gi|218511864|sp|Q6BKC2|SWR1_DEBHA RecName: Full=Helicase SWR1
 gi|202953552|emb|CAR66400.1| DEHA2F23188p [Debaryomyces hansenii]
          Length = 1616

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + KIP+      S G G+NL  G + ++F+   W+    +Q  +R       + G  R V
Sbjct: 1397 DSKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDRC-----HRIGQSRDV 1450

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Y  +++ TI+  +L++   K  + ++++
Sbjct: 1451 HIYRFVSEYTIESNILRKANQKRQLDNVVI 1480


>gi|161528234|ref|YP_001582060.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
 gi|160339535|gb|ABX12622.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
          Length = 574

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           Q  TL +D   I ++ +G+  L+ A   +   G+NL     + +F  L W    H+Q  +
Sbjct: 450 QSDTLRQD--QIDKFQKGESKLMIAGIRAGNVGINLTRAKYV-IFAELDWSPAIHRQAED 506

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           R+      + G +  VF YYLI   T+D+ V   L  KS
Sbjct: 507 RL-----HRIGQQNTVFAYYLIGNGTLDDHVANVLVDKS 540


>gi|309362352|emb|CAP28139.2| hypothetical protein CBG_08287 [Caenorhabditis briggsae AF16]
          Length = 1512

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ M  +    R  + G K+ V V  LI  N+++
Sbjct: 926  AGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKKEVRVLRLITANSVE 979

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L   R K  + + ++ A K
Sbjct: 980  EKMLAVARYKLNVDEKVIQAGK 1001


>gi|254519060|ref|ZP_05131116.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226912809|gb|EEH98010.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 1084

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 18/138 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            EE H   V  +    L+ I  K  +  I+ +Y        L  + P  + L+     + E
Sbjct: 927  EEGHKILVFSQFTSVLKNIASKLRSEHILFSY--------LDGSIPSEKRLE----LVNE 974

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG   +      + G GLNL    +I++ F  WW+       +E     R  + G   
Sbjct: 975  FNEGINSVFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQATDRAHRFGQTN 1028

Query: 164  AVFVYYLIAQNTIDELVL 181
             V V  LIA+N+I+E ++
Sbjct: 1029 IVEVIKLIARNSIEEKII 1046


>gi|255713990|ref|XP_002553277.1| KLTH0D13046p [Lachancea thermotolerans]
 gi|238934657|emb|CAR22839.1| KLTH0D13046p [Lachancea thermotolerans]
          Length = 1540

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1089 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1142

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L R   K  I   ++ A K
Sbjct: 1143 EVILDRAHKKLDIDGKVIQAGK 1164


>gi|190345390|gb|EDK37263.2| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 42/191 (21%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            E    F  ++K  KC++L N                        I  K++   IIV   F
Sbjct: 914  EETNGFTPSTKIEKCIELVNQ-----------------------IRTKSSEEKIIVFSQF 950

Query: 78   NS--DLARL---QKAFPQGR-----TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             +  DL +L   +K  P  R     +LD    TI+ + +G   +L     +   GL L  
Sbjct: 951  TTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGSTQVLLISLRAGNVGLTLTC 1010

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++    W    E Q M       R  + G +R VFV+ ++  +TI+  +++  + K
Sbjct: 1011 ANHVILMDPFWNPFVEEQAM------DRAHRIGQQREVFVHRILLNDTIEGRIMELQKYK 1064

Query: 188  STIQDLLLNAL 198
               ++++ NAL
Sbjct: 1065 ---KEMVQNAL 1072


>gi|302786754|ref|XP_002975148.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
 gi|300157307|gb|EFJ23933.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
          Length = 1017

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +Q +N    P  +      + G GLNLQ    +++F S W     + QM ++    R  +
Sbjct: 704 LQMFNAEDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQMDQQ-AEDRAHR 757

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 758 IGQKKEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|251773066|gb|EES53622.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 824

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +F  G   D+ P  ++ + E     +F    +   GLNLQ+  ++LV   L W+    +Q
Sbjct: 569 SFHGGIPSDRRPALVERFREDPDCRVFLSTDAGSTGLNLQH-ASVLVNMDLPWNPAILEQ 627

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I RI      + G KR V +   +A+  I+E +L  L  K ++ + +L+ 
Sbjct: 628 RIARI-----HRMGQKRPVQIVNFVAKGGIEEGMLGLLSFKQSLSEGILDG 673


>gi|149239807|ref|XP_001525779.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449902|gb|EDK44158.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1139

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + E+N  + I +      S G G+NL  G + L+ F   W+     Q + RI      + 
Sbjct: 889 VNEFNRNEEIHVFLLSSKSGGMGINL-VGASRLILFDNDWNPSTDLQSLSRI-----HRD 942

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  +  F+Y L     IDE + QR   KS +    L+
Sbjct: 943 GQTKPCFIYRLFTAGCIDEKIFQRQLMKSKLSSKFLD 979


>gi|312071167|ref|XP_003138483.1| hypothetical protein LOAG_02898 [Loa loa]
 gi|307766356|gb|EFO25590.1| hypothetical protein LOAG_02898 [Loa loa]
          Length = 755

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 101 IQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           ++++N+ K    + LL +    CG  LNL  G N L+ F   W+     Q + R+    Q
Sbjct: 547 VEKFNDPKSVEYVFLLSSKAGGCG--LNL-IGANRLIMFDPDWNPANDDQAMARVWRDGQ 603

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R     +  F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 604 R-----KNCFIYRLLASGSIEEKMFQRQAHKKALSSCVID 638


>gi|239908234|ref|YP_002954975.1| putative helicase [Desulfovibrio magneticus RS-1]
 gi|239798100|dbj|BAH77089.1| putative helicase [Desulfovibrio magneticus RS-1]
          Length = 1075

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ +  WW+       +E     R  + G  R VF Y LI QNT++E 
Sbjct: 986  GTGLNLT-SADYVIHYDPWWN-----PAVENQATDRTHRIGQLRQVFSYKLICQNTVEEK 1039

Query: 180  VLQRLRTKSTIQDLLL 195
            +L+    K  + + ++
Sbjct: 1040 ILKLQEQKKDVAEAVI 1055


>gi|209882325|ref|XP_002142599.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209558205|gb|EEA08250.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1866

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 12/86 (13%)

Query: 120  GHGLNLQYGGNILVFFSLWW---DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            G G+NL     ++++ S W    DL+   +   RIG T+Q Q        +Y L+ +++I
Sbjct: 944  GLGINLTTADTVIIYDSDWNPQNDLQAEARA-HRIGQTKQVQ--------IYRLVTKDSI 994

Query: 177  DELVLQRLRTKSTIQDLLLNALKKET 202
            +E +L+R +TK  +  L++  L   +
Sbjct: 995  EENILERAKTKMVLDTLVVQGLNNTS 1020


>gi|294656433|ref|XP_002770263.1| DEHA2D05456p [Debaryomyces hansenii CBS767]
 gi|199431470|emb|CAR65619.1| DEHA2D05456p [Debaryomyces hansenii]
          Length = 838

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG   +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 662 EGSEFIFLLSSKAGGCGINL-IGANRLILIDPDWNPASDQQALARVW-----RDGQKKDC 715

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 716 FIYRFISTGTIEEKIFQRQSMKLSLSSCVVD 746


>gi|302852393|ref|XP_002957717.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
 gi|300257011|gb|EFJ41266.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
          Length = 610

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           LL     + G GLN+  G N LV F   W+     Q + R  V RQ Q   K+ V++Y L
Sbjct: 340 LLLLSSKAGGVGLNI-IGANRLVLFDPDWNPANDLQAMAR--VWRQGQ---KKKVWIYRL 393

Query: 171 IAQNTIDELVLQR 183
           +   TI+E V QR
Sbjct: 394 LTTGTIEEKVYQR 406


>gi|302791571|ref|XP_002977552.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
 gi|300154922|gb|EFJ21556.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
          Length = 1032

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +Q +N    P  +      + G GLNLQ    +++F S W     + QM ++    R  +
Sbjct: 704 LQMFNAEDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHR 757

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 758 IGQKKEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|281211743|gb|EFA85905.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1675

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 18/94 (19%)

Query: 101  IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGV 153
            + EWN    P    +L  H  + G G+NLQ    +++F S W    DL+  Q    R+G 
Sbjct: 1045 VVEWNRKDSPYFIFVLSTH--AGGLGMNLQTADTVIIFDSDWNPQMDLQ-AQDRCHRVGQ 1101

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +        V V+ LI+ +TI+E +L+R   K
Sbjct: 1102 VNR--------VNVFRLISASTIEERILERATDK 1127


>gi|255712323|ref|XP_002552444.1| KLTH0C05038p [Lachancea thermotolerans]
 gi|238933823|emb|CAR22006.1| KLTH0C05038p [Lachancea thermotolerans]
          Length = 894

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 109 IPLLFA---HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +P LFA      S G GLNL  G + LV F   W+     Q + RI      + G +R  
Sbjct: 679 VPSLFAFLLSAKSGGVGLNL-IGASRLVLFDNDWNPAIDLQAMSRI-----HRDGQRRPC 732

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
           F+Y L+    IDE + QR   K ++
Sbjct: 733 FIYRLLTTGCIDEKIFQRQLMKISL 757


>gi|110004998|emb|CAK99329.1| hypothetical dna/rna helicase protein [Spiroplasma citri]
          Length = 1098

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 84   LQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDL 141
            LQ  +  G+T  +    + E +NE KI  +F      G  GLNL    ++++ F  WW+ 
Sbjct: 968  LQYFYLDGKTRSESRVLMTEKFNEDKIINVFLISLKAGGVGLNLT-AADVVIHFDPWWN- 1025

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  +E     R  + G +  V V  LIA+ TI+E +L     K  + + +LN
Sbjct: 1026 ----PSVENQATDRAHRFGQQNTVQVIKLIAKGTIEEKILTIQNNKQEVINAVLN 1076


>gi|67609421|ref|XP_666977.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis TU502]
 gi|54658055|gb|EAL36743.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis]
          Length = 2025

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     ++++ S W    + Q         R  + G K+ V +Y L+ +++I+E 
Sbjct: 950  GLGINLTTADTVIIYDSDWNPQNDLQ------AEARAHRIGQKKQVQIYRLVTKDSIEEN 1003

Query: 180  VLQRLRTKSTIQDLLLNAL 198
            +L+R +TK  +  L++  L
Sbjct: 1004 ILERAKTKMVLDTLVVQGL 1022


>gi|281357099|ref|ZP_06243589.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
 gi|281316657|gb|EFB00681.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
          Length = 1041

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  +IPL      + G GLNL     ++++   WW+       +E     R  + G  RA
Sbjct: 937  NSPEIPLFLLSLKAGGTGLNLTSADTVIIY-DPWWN-----PAVELQAADRTHRIGQTRA 990

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V    L+ +++I+E +L+    K  I D +++
Sbjct: 991  VSSVKLVVKDSIEEKILELQERKREIFDSVID 1022


>gi|254444760|ref|ZP_05058236.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259068|gb|EDY83376.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 831

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 22/168 (13%)

Query: 48  WKEVHDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLAR----LQKAFPQ-------G 91
           W E   E    L V++EK          +++   F   L R    ++++FP+       G
Sbjct: 647 WMESSIEDSGKLMVLLEKLIEVLGTGHKVVIFSQFVRFLKRARIMVEESFPELPIFELTG 706

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T D++    +  N  +   +     +   G+ L +  + +     WW+     Q I+R+
Sbjct: 707 STHDREAPVREFQNTDQTAAMLVSLKAASVGITL-HTADYVFLLDPWWNPAVESQAIDRV 765

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 + G    VFVY L+AQ TI+E +    + K  + D ++N  K
Sbjct: 766 -----HRIGQTNNVFVYRLLAQGTIEEKIHHLQKEKRDLFDSIVNDSK 808


>gi|211906285|gb|ACJ11660.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211906292|gb|ACJ11664.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 7   RLHRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKD 53


>gi|308800202|ref|XP_003074882.1| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
 gi|119358821|emb|CAL52149.3| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
          Length = 1023

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +I +      S G G+NL  G + ++F+   W+    QQ  +R       + G  R V
Sbjct: 857 DDRIFIFILSTRSGGFGINLT-GADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTRDV 910

Query: 166 FVYYLIAQNTIDELVLQR 183
            +Y LI + TI+E +LQ+
Sbjct: 911 HIYRLIGEGTIEESILQK 928


>gi|209877571|ref|XP_002140227.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209555833|gb|EEA05878.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1100

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 93  TLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T D+D   I ++N+    I +      + G G+NL     ++++ S W         ++ 
Sbjct: 542 TEDRD-TQISDFNKPNSDISIFLLSTRAGGLGVNLATADIVIIYDSDW------NPQVDL 594

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + R  + G K+ V++Y L  +NTI+E +L+R   K
Sbjct: 595 QAMDRAHRIGQKKPVYIYRLFHENTIEEKILERANLK 631


>gi|119715910|ref|YP_922875.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119536571|gb|ABL81188.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 723

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++ ++     + G G+NLQ   N+ V   L W   E  Q I+R+      + G +  
Sbjct: 603 NDPEVAVIVCSLTAAGVGVNLQVASNV-VLAELSWTDAEQTQAIDRV-----HRIGQEEP 656

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V  + +IA  TID  V + + +K+ +  + L+   +E
Sbjct: 657 VTAWRIIASQTIDTRVAELIDSKAGLAAVALDGSDEE 693


>gi|82595847|ref|XP_726017.1| nucleotide excision repair protein [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481248|gb|EAA17582.1| similar nucleotide excision repair proteins-related [Plasmodium
           yoelii yoelii]
          Length = 818

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++ +L     + G GLNLQ    I +    WW+     Q I+     R  + G  + 
Sbjct: 713 NDKQLRVLLISLKAGGEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQTKT 766

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V+    I +NT++E ++Q    K  + D
Sbjct: 767 VYAIRFIIENTVEEKIIQLQNKKQLVFD 794


>gi|224139702|ref|XP_002323235.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867865|gb|EEF04996.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 398

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   +L A   + G G+NL     + +    WW+    +Q I R+      Q G +  V 
Sbjct: 295 GADTVLLASLKTSGTGINLTAASKVYLL-EPWWNSAVEEQAINRV-----HQYGQQENVR 348

Query: 167 VYYLIAQNTIDELVLQ 182
           +  LIAQN+I+E +L+
Sbjct: 349 IVRLIAQNSIEERILE 364


>gi|211906290|gb|ACJ11663.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 7   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKD 53


>gi|310795289|gb|EFQ30750.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 903

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           LD DP T          ++ A  A C  GLNL    + ++    WW      Q ++R+  
Sbjct: 795 LDHDPDTR---------VMLASLAVCSVGLNL-VAADTVILADSWWAPAIEDQAVDRV-- 842

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G KR   V+ L+ + T++E VL     K T+
Sbjct: 843 ---HRLGQKRPTTVWRLVMEGTVEERVLDIQHEKRTL 876


>gi|259149765|emb|CAY86569.1| Snf2p [Saccharomyces cerevisiae EC1118]
          Length = 1706

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1168 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1221

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1222 EVILERAHKKLDIDGKVIQAGK 1243


>gi|58261298|ref|XP_568059.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57230141|gb|AAW46542.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 900

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    N+      WW     Q  IE   + R  + G K+ V V+ LIA++TI+  VL
Sbjct: 807 GLNLTAASNVF-LCDPWW-----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVL 860


>gi|67624313|ref|XP_668439.1| DNA repair protein RAD54-like [Cryptosporidium hominis TU502]
 gi|54659648|gb|EAL38216.1| DNA repair protein RAD54-like [Cryptosporidium hominis]
          Length = 877

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T  + N      L +  A  G G+NL  G N LV F   W+    +Q + R+      + 
Sbjct: 572 TFNDPNSNSFAFLLSSKAG-GCGINL-IGANRLVMFDPDWNPANDKQALARVW-----RD 624

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K+  ++Y L +  TI+E + QR   K  +  +L+ +
Sbjct: 625 GQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTS 662


>gi|66361996|ref|XP_627962.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
 gi|46227534|gb|EAK88469.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
          Length = 877

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T  + N      L +  A  G G+NL  G N LV F   W+    +Q + R+      + 
Sbjct: 572 TFNDPNSNSFAFLLSSKAG-GCGINL-IGANRLVMFDPDWNPANDKQALARVW-----RD 624

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K+  ++Y L +  TI+E + QR   K  +  +L+ +
Sbjct: 625 GQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTS 662


>gi|254583686|ref|XP_002497411.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
 gi|238940304|emb|CAR28478.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
          Length = 848

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N L+     W+    QQ + R+      + G K+  
Sbjct: 672 EGQEFVFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALARVW-----RDGQKKDC 725

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F+Y  I+  +I+E + QR   K ++   +++A
Sbjct: 726 FIYRFISTGSIEEKIYQRQSMKLSLSSCVVDA 757


>gi|145610651|ref|XP_368232.2| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
 gi|145018030|gb|EDK02309.1| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
          Length = 1111

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 99  CTIQEWNE-GKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVT 154
             I E+N+ G    +F      G  G+NL     +++F S W    + Q M    RIG T
Sbjct: 547 AAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQT 606

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +Q        V+VY  +  NTI+E VL+R   K  +  L++
Sbjct: 607 KQ--------VYVYRFLVDNTIEEKVLERAAQKLHLDRLVI 639


>gi|308493124|ref|XP_003108752.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
 gi|308248492|gb|EFO92444.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
          Length = 1496

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNLQ    +++F S W     HQ M       R  + G K+ V V  L
Sbjct: 923  LFMLSTRAGGLGLNLQTADTVIIFDSDW---NPHQDM---QAQDRAHRIGQKKEVRVLRL 976

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I  N+++E +L   R K  + + ++ A K
Sbjct: 977  ITANSVEEKMLAVARYKLNVDEKVIQAGK 1005


>gi|304438573|ref|ZP_07398512.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368411|gb|EFM22097.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 819

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  + + K  + F    + G GLNL      ++ +  WW+    +Q  +RI      + G
Sbjct: 709 ISLFEQSKEGIFFISLKAGGVGLNLT-SAQFVIIYEPWWNPSAERQASDRI-----YRIG 762

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + VF+Y+ I  +TI+E +++
Sbjct: 763 QDKPVFIYHFIVNDTIEEKIIE 784


>gi|26350683|dbj|BAC38978.1| unnamed protein product [Mus musculus]
          Length = 1069

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R    RQ  +     V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRAHRIRQCSS-----VNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|260943410|ref|XP_002616003.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
 gi|238849652|gb|EEQ39116.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
          Length = 879

 Score = 37.4 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T++K    +  +N  EG   +      + G G+NL  G N LV     W+    QQ + R
Sbjct: 688 TINKRQKIVDRFNDPEGNEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPAADQQALAR 746

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  +   TI+E + QR   K ++   +++A
Sbjct: 747 VW-----RDGQKKDCFIYRFMCTGTIEEKIFQRQSMKLSLSSCVVDA 788


>gi|170050421|ref|XP_001861304.1| helicase [Culex quinquefasciatus]
 gi|167872038|gb|EDS35421.1| helicase [Culex quinquefasciatus]
          Length = 1024

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 101 IQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N EG    +F      G  G+NL     ++++ S W    + Q M       R  +
Sbjct: 494 IDEYNAEGSQKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAM------DRAHR 547

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+ V V+ LI +NTI+E +++R   K  +  L++
Sbjct: 548 IGQKKQVRVFRLITENTIEEKIVERAEIKLKLDKLVI 584


>gi|83318941|emb|CAJ38808.1| Lodestar protein [Platynereis dumerilii]
          Length = 1244

 Score = 37.4 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L+   L W+     Q  +RI      + G K+ VF++  + +NT++E 
Sbjct: 1120 GVGLNL-IGGNHLIMVDLHWNPALEAQACDRI-----YRVGQKKDVFIHRFVCKNTVEEK 1173

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +    ++K  + + +L+ 
Sbjct: 1174 IQMLQKSKMALAENILSG 1191


>gi|134115669|ref|XP_773548.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256174|gb|EAL18901.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 899

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    N+      WW     Q  IE   + R  + G K+ V V+ LIA++TI+  VL
Sbjct: 806 GLNLTAASNVF-LCDPWW-----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVL 859


>gi|322694613|gb|EFY86438.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1027

 Score = 37.4 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E+NE   IP+      + G G+NL     +++F     DL ++ Q  +     R  + 
Sbjct: 907  IDEFNEDASIPVFLLTTGAGGTGINLTAANKVIIF-----DLSDNPQD-DIQAENRAHRL 960

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            G KR V V  LIA  +I+EL+ +  + K  + + +  A   E  H
Sbjct: 961  GQKRDVEVIRLIASQSIEELIYKACQKKIELANKVTGAGALEDTH 1005


>gi|313228968|emb|CBY18120.1| unnamed protein product [Oikopleura dioica]
          Length = 996

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL     ++++ S W    + Q M       R  + G K+ V+VY +
Sbjct: 498 LFMLSTKAGGLGINLMTANVVIIYDSDWNPQNDLQAM------DRAHRIGQKKQVYVYRM 551

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I   ++DE +++R   K  +  +++ +
Sbjct: 552 ITDESVDERIIERSELKMRLDSVVIQS 578


>gi|134118954|ref|XP_771980.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254584|gb|EAL17333.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1060

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL     +++F   W              + R  + G KR V VY LI Q TI+EL
Sbjct: 743 GVGLNLTAANKVVIFDPSWT-------------MDRAFRIGQKRTVEVYRLIGQGTIEEL 789

Query: 180 VLQR 183
           + +R
Sbjct: 790 IYER 793


>gi|296134095|ref|YP_003641342.1| helicase domain protein [Thermincola sp. JR]
 gi|296032673|gb|ADG83441.1| helicase domain protein [Thermincola potens JR]
          Length = 469

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 25/116 (21%)

Query: 76  HFNSDLARLQKAFPQGRTLDKD----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           HFN  L R QK + +    +KD     CT                 S   GLN Q+  N+
Sbjct: 341 HFNGKLKRNQKEYTKWLFQNKDYRVMICT----------------DSGSQGLNFQFC-NV 383

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           +V F L W+  + +Q I RI     R       V+VY  + Q+T++E +   L +K
Sbjct: 384 IVNFDLPWNPMKVEQRIGRI----DRLGQTADEVYVYNFVLQDTVEEKIFHILSSK 435


>gi|255037622|ref|YP_003088243.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
 gi|254950378|gb|ACT95078.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
          Length = 1261

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T+D+     +  N+    +      + G GLNL    + +     WW+       +ER
Sbjct: 1143 GQTVDRAGRVNRFQNDDTCRVFLMSLKAGGVGLNLT-EADYVYLVDPWWN-----PAVER 1196

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
              + R  + G  R VF Y +I ++TI+E ++L + R +   +DL+
Sbjct: 1197 QAIDRTHRIGQTRKVFAYKMICKDTIEEKILLLQQRKQDLAEDLV 1241


>gi|193084056|gb|ACF09729.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           KM3-86-C1]
          Length = 569

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  +  G   L+     +   G+NL      ++F  L W    H+Q  +R+      + G
Sbjct: 454 IDNFQNGGTKLIIVGLRAGNLGINLTRA-KYVIFAELDWSPAIHRQAEDRL-----HRIG 507

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  VF YYLI + T+DE V   L  KS   D +++
Sbjct: 508 QKNTVFAYYLIGKRTLDEHVANILVDKSYEIDAIMD 543


>gi|296415159|ref|XP_002837259.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633120|emb|CAZ81450.1| unnamed protein product [Tuber melanosporum]
          Length = 1362

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     ++E+N    P  +      + G GLNLQ    ++++ S W     HQ +  +  
Sbjct: 851 DDRSALLKEFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ-- 905

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  N+++E +L+R + K  I   ++ A K
Sbjct: 906 -DRAHRIGQKNEVRILRLITSNSVEERILERAQYKLDIDGKVIQAGK 951


>gi|190344615|gb|EDK36323.2| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++DP         KIP+      S G G+NL  G + ++F+   W+    +Q  +R  
Sbjct: 281 TFNRDP---------KIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDRC- 329

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  R V +Y  +++ TI+  +L++   K  + ++++
Sbjct: 330 ----HRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVVI 368


>gi|170580649|ref|XP_001895355.1| recombination factor GdRad54 [Brugia malayi]
 gi|158597754|gb|EDP35808.1| recombination factor GdRad54, putative [Brugia malayi]
          Length = 865

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+  F+Y L++  +I+E 
Sbjct: 678 GCGLNL-IGANRLIMFDPDWNPANDDQAMARVW-----RDGQKKNCFIYRLLSTGSIEEK 731

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           + QR   K  +   +++ +     H
Sbjct: 732 MFQRQAHKKALSSCVVDEISDVARH 756


>gi|296186183|ref|ZP_06854588.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|296049451|gb|EFG88880.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1034

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+N   K+ +      + G GLNL    N+++ F  WW+       +E     R  + 
Sbjct: 920  VNEFNSCTKVKVFLISLKAGGTGLNLT-SANLVIHFDPWWN-----PAVEDQATDRAHRI 973

Query: 160  GFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNALKKETI 203
            G K  V V  L+A+ TI+E ++L +   K  I +++   LK   +
Sbjct: 974  GQKNVVEVIKLVARGTIEEKIILLQEHKKELIHNIITGELKNSNV 1018


>gi|160880712|ref|YP_001559680.1| non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
 gi|160429378|gb|ABX42941.1| Non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
          Length = 1069

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +N G+  +      + G GLNL  G + ++ +  WW+    +Q  +R+      + G
Sbjct: 961  VKRFNAGEGSIFLISLKAGGTGLNL-VGADTVIHYDPWWNPAVEEQATDRV-----YRIG 1014

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-------LLLNALKKETI 203
             K  V V  L+ +NTI+E + +  + K  + D       + +N L KE +
Sbjct: 1015 QKNNVHVIKLLTKNTIEEKIFKLQKKKKELSDSIIQSKEVFINTLSKEEL 1064


>gi|227875351|ref|ZP_03993493.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844256|gb|EEJ54423.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
          Length = 966

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A+NTI+
Sbjct: 873 SGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVAKNTIE 926

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + VL     K  + D +L
Sbjct: 927 QRVLAMQAQKRELFDQVL 944


>gi|226355788|ref|YP_002785528.1| DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti VCD115]
 gi|226317778|gb|ACO45774.1| putative DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti
            VCD115]
          Length = 1132

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T D+    I  +  G+  +      + G GLNL    + ++ +  WW+     Q  +R
Sbjct: 994  GQTQDRQ-TQIDRFQNGETHVFLITLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQATDR 1051

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFVY LIA  +++E +L     K+++   +L+ 
Sbjct: 1052 -----AYRIGQDKPVFVYKLIAAGSVEERILDLQSRKASLARGILDG 1093


>gi|47216738|emb|CAG01012.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 381

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           + G GL      ++ VF  L+W+   +++ +    RIG T         ++ V+YLIA+ 
Sbjct: 67  AAGQGLTFTAASHV-VFAELYWNPGHIKQAEDRAHRIGQTS--------SINVHYLIAKG 117

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T D ++   L  K T+    LN  K+
Sbjct: 118 TFDTVMWSMLNRKETVTGTTLNGKKE 143


>gi|269976365|ref|ZP_06183357.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
 gi|269935436|gb|EEZ91978.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
          Length = 970

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A+NTI+
Sbjct: 877 SGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVAKNTIE 930

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + VL     K  + D +L
Sbjct: 931 QRVLAMQAQKRELFDQVL 948


>gi|255523219|ref|ZP_05390190.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|255513087|gb|EET89356.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
          Length = 1005

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + E+N   K+ +      + G GLNL    N+++ F  WW+       +E     R  + 
Sbjct: 891 VNEFNSCTKVKVFLISLKAGGTGLNLT-SANLVIHFDPWWN-----PAVEDQATDRAHRI 944

Query: 160 GFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNALKKETI 203
           G K  V V  L+A+ TI+E ++L +   K  I +++   LK   +
Sbjct: 945 GQKNVVEVIKLVARGTIEEKIILLQEHKKELIHNIITGELKNSNV 989


>gi|295319060|gb|ADF99437.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. 230613]
          Length = 1050

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDELVLQ 182
             K+ V V  LIA+ TI+E + +
Sbjct: 1019 QKKTVEVIRLIAKGTIEEKIYK 1040


>gi|209945932|gb|ACI97197.1| okra [Drosophila yakuba]
          Length = 168

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y +
Sbjct: 97  LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRM 150

Query: 171 IAQNTIDELVLQR 183
           +A  +I+E +LQR
Sbjct: 151 VASGSIEEKILQR 163


>gi|168050295|ref|XP_001777595.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162671080|gb|EDQ57638.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 775

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           SCG G+NL     ++++ S   D   H  +     + R  + G  + + VY L+ + +++
Sbjct: 621 SCGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRIGQSKTLLVYRLVVRASVE 674

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +LQ  R K  ++ L  N
Sbjct: 675 ERILQLARKKLMLEYLFAN 693


>gi|325274896|ref|ZP_08140906.1| DNA helicase [Pseudomonas sp. TJI-51]
 gi|324099980|gb|EGB97816.1| DNA helicase [Pseudomonas sp. TJI-51]
          Length = 659

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 19/137 (13%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E A A    V +  ++   R QKA     T   DP          + +      + G GL
Sbjct: 524 EFAKAGIQTVTFTGSNSGTRKQKAID---TFMSDPA---------VKVFIGTTKAAGVGL 571

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    N + F SL W     +Q  +R       + G KRAV V   +   TIDE V+  
Sbjct: 572 NL-VAANYVFFASLPWTAAAKRQAEDR-----AYRNGQKRAVTVLMPVISGTIDEQVVLL 625

Query: 184 LRTKSTI-QDLLLNALK 199
           L+ K +I QDLL ++++
Sbjct: 626 LQHKESIEQDLLDDSVQ 642


>gi|307700797|ref|ZP_07637822.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307613792|gb|EFN93036.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 970

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A+NTI+
Sbjct: 877 SGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVAKNTIE 930

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + VL     K  + D +L
Sbjct: 931 QRVLAMQAQKRELFDQVL 948


>gi|306818666|ref|ZP_07452388.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
 gi|304648352|gb|EFM45655.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
          Length = 970

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A+NTI+
Sbjct: 877 SGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVAKNTIE 930

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + VL     K  + D +L
Sbjct: 931 QRVLAMQAQKRELFDQVL 948


>gi|213406015|ref|XP_002173779.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
 gi|212001826|gb|EEB07486.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
          Length = 1276

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQRQAGFKRA 164
            +IP+      S G G+NL  G + ++F+   W+ +   + Q    RIG TR         
Sbjct: 1063 RIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD-------- 1113

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y LI++ T++  +L+R   K  +  +++
Sbjct: 1114 VHIYRLISEYTVESNMLKRANQKRMLDKIVI 1144


>gi|237795092|ref|YP_002862644.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
 gi|229260925|gb|ACQ51958.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|68073367|ref|XP_678598.1| DNA repair protein rhp16 [Plasmodium berghei strain ANKA]
 gi|56499117|emb|CAH97553.1| DNA repair protein rhp16, putative [Plasmodium berghei]
          Length = 1545

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+ ++ +L     + G GLNLQ    I +    WW+     Q I+     R  + G  + 
Sbjct: 1440 NDNQLRVLLISLKAGGEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQTKT 1493

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V+    I +NT++E ++Q    K  + D
Sbjct: 1494 VYAIRFIIENTVEEKIIQLQNKKQLVFD 1521


>gi|19115773|ref|NP_594861.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe 972h-]
 gi|46397295|sp|Q9UTN6|SNF21_SCHPO RecName: Full=Chromatin structure-remodeling complex subunit snf21;
           AltName: Full=ATP-dependent helicase snf21; AltName:
           Full=RSC complex subunit snf21
 gi|5830480|emb|CAB54824.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe]
 gi|42558224|dbj|BAD11105.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Schizosaccharomyces pombe]
          Length = 1199

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKR 163
            ++ L      + G GLNLQ    +++F S W    DL + Q    RIG T++       
Sbjct: 803 AEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDL-QAQDRAHRIGQTKE------- 854

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +Y LI + +++E +L R + K  I   ++ A K
Sbjct: 855 -VRIYRLITEKSVEENILARAQYKLDIDGKVIQAGK 889


>gi|317025573|ref|XP_001389339.2| ISWI chromatin-remodeling complex ATPase ISW2 [Aspergillus niger
           CBS 513.88]
          Length = 1121

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 44/150 (29%)

Query: 81  LARLQKA------FPQ-GRTLD--KDPCTIQEWNEGKIPLLFAH------------PAS- 118
           LAR+QK       F Q  R LD  +D C  +E+N  +I    AH            P S 
Sbjct: 510 LARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDRIAAIDEYNKPGSE 569

Query: 119 ----------CGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAV 165
                      G G+NL    +I+V F   W+ +   Q ++R   IG T+Q        V
Sbjct: 570 KFIFLLTTRAGGLGINLTTA-DIVVLFDSDWNPQADLQAMDRAHRIGQTKQ--------V 620

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+  + +N I+E VL+R   K  +  L++
Sbjct: 621 VVFRFVTENAIEEKVLERAAQKLRLDQLVI 650


>gi|148379627|ref|YP_001254168.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 3502]
 gi|153931482|ref|YP_001384006.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153936716|ref|YP_001387549.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. Hall]
 gi|226948994|ref|YP_002804085.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
 gi|148289111|emb|CAL83205.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927526|gb|ABS33026.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 19397]
 gi|152932630|gb|ABS38129.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. Hall]
 gi|226841046|gb|ACO83712.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|50286955|ref|XP_445907.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74691046|sp|Q6FV37|INO80_CANGA RecName: Full=Putative DNA helicase INO80
 gi|49525213|emb|CAG58826.1| unnamed protein product [Candida glabrata]
          Length = 1484

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+NL     ++ + S W    + Q M    R+G T+Q        V VY L+ + TI+
Sbjct: 1374 GLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQ--------VTVYRLLVRGTIE 1425

Query: 178  ELVLQRLRTKSTIQDLLLNALKKET 202
            E +  R + K  +Q +++    K+T
Sbjct: 1426 ERMRDRAKQKEQVQQVVMEGKTKDT 1450


>gi|311032686|ref|ZP_07710776.1| SWF/SNF family helicase [Bacillus sp. m3-13]
          Length = 1044

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +N G+         + G GLNL  G + ++ + LWW+       +E     R  + G 
Sbjct: 936  ERFNSGERDFFLISLKAGGTGLNLT-GADTVILYDLWWN-----PAVEEQAADRAHRMGQ 989

Query: 162  KRAVFVYYLIAQNTIDE 178
             + V V  L+A+ TI+E
Sbjct: 990  TQTVQVIKLVARGTIEE 1006


>gi|302308944|ref|NP_986109.2| AFR562Cp [Ashbya gossypii ATCC 10895]
 gi|299790868|gb|AAS53933.2| AFR562Cp [Ashbya gossypii ATCC 10895]
          Length = 1445

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 961  AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITDNSVE 1014

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1015 EVILERAHRKLDIDGKVIQAGK 1036


>gi|229084801|ref|ZP_04217060.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
 gi|228698515|gb|EEL51241.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
          Length = 1071

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL     + + + LWW+    QQ        R  + G K 
Sbjct: 965  FNEGEGDLFLISLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAYRMGQKN 1018

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1019 TVQVIKLVAHGTIEE 1033


>gi|294658308|ref|XP_002770756.1| DEHA2F06446p [Debaryomyces hansenii CBS767]
 gi|202953033|emb|CAR66284.1| DEHA2F06446p [Debaryomyces hansenii]
          Length = 884

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G  + VF+Y ++    ID
Sbjct: 671 SGGVGLNL-IGASRLILFDNDWNPSIDLQAMARI-----HRDGQTKPVFIYRIMTTGCID 724

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K+ + D  L+
Sbjct: 725 EKIFQRQMMKNNLSDKFLD 743


>gi|170755378|ref|YP_001781299.1| Snf2/Rad54 family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120590|gb|ACA44426.1| helicase, SNF2/RAD54 family [Clostridium botulinum B1 str. Okra]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|168180326|ref|ZP_02614990.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
 gi|182668683|gb|EDT80661.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|17561718|ref|NP_503548.1| hypothetical protein F59A7.8 [Caenorhabditis elegans]
 gi|2291218|gb|AAB65339.1| Hypothetical protein F59A7.8 [Caenorhabditis elegans]
          Length = 518

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  GGN L+   L W+    QQ  +RI      + G K+ V ++ LI + TI++ 
Sbjct: 419 GVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YRMGQKKEVHIHRLIVKETIEQR 472

Query: 180 VL 181
           V+
Sbjct: 473 VM 474


>gi|292495070|sp|P38086|RDH54_YEAST RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|433837|emb|CAA53930.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|536326|emb|CAA85017.1| RDH54 [Saccharomyces cerevisiae]
          Length = 958

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 742 SGGVGLNL-VGRSRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 795

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +LQR   K+++    L
Sbjct: 796 EKILQRQLMKNSLSQKFL 813


>gi|228914427|ref|ZP_04078038.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
 gi|228845210|gb|EEM90250.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
          Length = 1064

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL     + + + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|42780946|ref|NP_978193.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42736867|gb|AAS40801.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 1064

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL     + + + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|193084404|gb|ACF10057.1| SNF2-related protein [uncultured marine crenarchaeote
           SAT1000-21-C11]
          Length = 569

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  +  G   L+     +   G+NL      ++F  L W    H+Q  +R+      + G
Sbjct: 454 IDNFQNGGTKLIVVGLRAGNLGINLTRA-KYVIFAELDWSPAIHRQAEDRL-----HRIG 507

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  VF YYLI + T+DE V   L  KS   D +++
Sbjct: 508 QKNTVFAYYLIGKRTLDEHVANILVDKSYEIDAIMD 543


>gi|167383963|ref|XP_001736758.1| helicase [Entamoeba dispar SAW760]
 gi|165900796|gb|EDR27036.1| helicase, putative [Entamoeba dispar SAW760]
          Length = 954

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I ++N+  GK+ +      S G G+NLQ    ++++ S W    + Q M       R  +
Sbjct: 466 INDFNDPNGKVSIFLLSTRSGGLGINLQSADTVILYDSDWNPQSDIQAM------DRAHR 519

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V VY LI + T ++ +++    K  +  L++ + K  T
Sbjct: 520 IGQTKPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGKTAT 563


>gi|39978121|ref|XP_370448.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
 gi|145013481|gb|EDJ98122.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G GLN+     +++F   W   WDL+  Q    RIG TR         V V+ L++Q TI
Sbjct: 650 GVGLNITSANKVVIFDPHWNPSWDLQ-AQDRAYRIGQTRD--------VDVFRLVSQGTI 700

Query: 177 DELVLQR 183
           +E+V  R
Sbjct: 701 EEIVYAR 707


>gi|322805986|emb|CBZ03553.1| swf/SNF family helicase [Clostridium botulinum H04402 065]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|168184681|ref|ZP_02619345.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
 gi|182672230|gb|EDT84191.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|297625268|ref|YP_003687031.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296921033|emb|CBL55571.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1132

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            GRT  +D   +Q + +G          + G GL L     + V    WW+     Q I+R
Sbjct: 1015 GRTRHRDE-RVQRFKDGNATAFLISLKAGGFGLTLTEADYVYVL-DPWWNPAAENQAIDR 1072

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                   + G  + V VY +++ NTI+E V+   + K  + D
Sbjct: 1073 -----THRIGQDKQVMVYRMVSTNTIEEKVVALQQRKRDLFD 1109


>gi|209881905|ref|XP_002142390.1| helicase  [Cryptosporidium muris RN66]
 gi|209557996|gb|EEA08041.1| helicase conserved C-terminal domain-containing protein
           [Cryptosporidium muris RN66]
          Length = 836

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE------WN 105
           H E + A+E I+ K            N  L+ + K F   R   K P   +E       N
Sbjct: 685 HHEMLDAIETILVKRKR---------NKSLSEINKHFVYIRIDGKTPGNKREEYVKEFQN 735

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      +CG GLNL   G + +F  L+W      Q  +R      R       +
Sbjct: 736 NINCKVAVLSITACGQGLNLTSAGTV-IFAELYWVPGFMLQAEDRC----HRMGTQYSCI 790

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            ++YL+A+NT+D+ +   L  K  I    L+ +
Sbjct: 791 NIHYLVAENTLDDKMWGILYKKQKIMASTLDGI 823


>gi|1769947|emb|CAA67095.1| SNF [Bacillus cereus ATCC 10987]
          Length = 1064

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL     + + + LWW+    QQ        R  + G K 
Sbjct: 958  FNEGEGDLFLISLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAYRMGQKN 1011

Query: 164  AVFVYYLIAQNTIDE 178
             V V  L+A  TI+E
Sbjct: 1012 TVQVIKLVAHGTIEE 1026


>gi|321257722|ref|XP_003193686.1| DNA recombination and repair protein Rad54B [Cryptococcus gattii
           WM276]
 gi|317460156|gb|ADV21899.1| DNA recombination and repair protein Rad54B, putative [Cryptococcus
           gattii WM276]
          Length = 818

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY      TI+E 
Sbjct: 657 GCGINL-IGANRLVLFDPDWNPASDQQALARVW-----RDGQKKECFVYRFQTTGTIEEK 710

Query: 180 VLQR 183
           + QR
Sbjct: 711 IFQR 714


>gi|153939497|ref|YP_001391002.1| Snf2/Rad54 family helicase [Clostridium botulinum F str. Langeland]
 gi|152935393|gb|ABS40891.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. Langeland]
          Length = 1077

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V V  LIA+ TI+E
Sbjct: 1019 QKKTVEVIRLIAKGTIEE 1036


>gi|146422206|ref|XP_001487044.1| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++DP         KIP+      S G G+NL  G + ++F+   W+    +Q  +R  
Sbjct: 281 TFNRDP---------KIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDRC- 329

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  R V +Y  +++ TI+  +L++   K  + ++++
Sbjct: 330 ----HRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVVI 368


>gi|198434196|ref|XP_002124510.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
            intestinalis]
          Length = 1444

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+E+N      LF      G  G+NL  G + ++ +   W+ +   Q  +R       + 
Sbjct: 1263 IEEFNNDPNVFLFLLSTRAGGLGINLT-GADTVIIYDSDWNPQNDSQAQDRC-----HRI 1316

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G +R V VY ++   TID+ +++R   K T++ ++++  K
Sbjct: 1317 GQERPVMVYRMVTMATIDQQIMERAARKRTMEKMIMHEDK 1356


>gi|295695376|ref|YP_003588614.1| helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295410978|gb|ADG05470.1| helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 572

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ+  N ++ F L W+    +Q I RI      + G  R VF++ L   +TI+
Sbjct: 434 AGGEGLNLQFC-NQIINFDLPWNPMRVEQRIGRI-----HRLGQTRDVFIHNLATADTIE 487

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           + +++ L+ K  + +L++  L
Sbjct: 488 QYIVELLQEKIRLFELVIGEL 508


>gi|229199361|ref|ZP_04326026.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
 gi|228584075|gb|EEK42228.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
          Length = 855

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|228975316|ref|ZP_04135873.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981952|ref|ZP_04142247.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228778064|gb|EEM26336.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228784449|gb|EEM32471.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 855

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 742 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 794

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 795 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|156095999|ref|XP_001614034.1| DNA repair protein rhp16 [Plasmodium vivax SaI-1]
 gi|148802908|gb|EDL44307.1| DNA repair protein rhp16, putative [Plasmodium vivax]
          Length = 1589

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +NE K + +L     + G GLNLQ    I +    WW+     Q I+     R  + G  
Sbjct: 1482 FNEDKHLRVLLISLKAGGEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQT 1535

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
            + V+    I +NT++E ++Q    K  + D  +    NA++K T
Sbjct: 1536 KTVYATRFIIENTVEEKIVQLQNKKQLVFDCTIGDSGNAMQKLT 1579


>gi|221062029|ref|XP_002262584.1| DNA repair protein rhp16 [Plasmodium knowlesi strain H]
 gi|193811734|emb|CAQ42462.1| DNA repair protein rhp16, putative [Plasmodium knowlesi strain H]
          Length = 1527

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +NE K + +L     + G GLNLQ    I +    WW+     Q I+     R  + G  
Sbjct: 1420 FNEDKHLRVLLISLKAGGEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQT 1473

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
            + V+    I +NT++E ++Q    K  + D  +    NA++K T
Sbjct: 1474 KTVYATRFIIENTVEEKIVQLQNKKQLVFDCTIGDSGNAMQKLT 1517


>gi|115453047|ref|NP_001050124.1| Os03g0352500 [Oryza sativa Japonica Group]
 gi|113548595|dbj|BAF12038.1| Os03g0352500 [Oryza sativa Japonica Group]
          Length = 214

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1   AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 44


>gi|297737996|emb|CBI27197.3| unnamed protein product [Vitis vinifera]
          Length = 1638

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 101 IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 577 IARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 630

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 631 GQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 667


>gi|229050914|ref|ZP_04194465.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
 gi|228722459|gb|EEL73853.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|294659915|ref|XP_462354.2| DEHA2G18722p [Debaryomyces hansenii CBS767]
 gi|199434332|emb|CAG90861.2| DEHA2G18722p [Debaryomyces hansenii]
          Length = 834

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 119 CGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           CG  GLNL     + + F  WW+ +  +Q I+R+      + G  + V +Y L  +NT++
Sbjct: 730 CGSVGLNLTCASQV-ILFDPWWNPQIQEQAIDRV-----YRIGQTKPVDIYELTVKNTVE 783

Query: 178 ELVLQRLRTKSTIQD 192
           + +L+  +TK  + +
Sbjct: 784 DNILKLQKTKRQLAN 798


>gi|311032005|ref|ZP_07710095.1| SNF2 family helicase [Bacillus sp. m3-13]
          Length = 937

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           IQE+ +G+  +L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 828 IQEFQDGEFHVLVLSLKAGGTGLNLT-AANHVIHYDRWWN-----PAVENQATDRAYRIG 881

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+  IA  T++E +   + +K  + + ++ +
Sbjct: 882 QSRFVHVHKFIATGTLEEKIDAMIESKQALNNQIITS 918


>gi|302406510|ref|XP_003001091.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
 gi|261360349|gb|EEY22777.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
          Length = 1392

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 898 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 951

Query: 178 ELVLQRLRTK 187
           E +L+R R K
Sbjct: 952 EKILERARFK 961


>gi|195387391|ref|XP_002052379.1| GJ22014 [Drosophila virilis]
 gi|194148836|gb|EDW64534.1| GJ22014 [Drosophila virilis]
          Length = 267

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++     W+    QQ I RI      + G K+  ++Y LIA  T++E 
Sbjct: 107 GQGINL-IGANRVIILDTSWNPSNDQQNIFRIF-----RLGQKKNCYIYRLIAMGTMEEK 160

Query: 180 VLQRLRTKSTI 190
           V  R  TK  +
Sbjct: 161 VYSRSVTKQAM 171


>gi|302673648|ref|XP_003026510.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
 gi|300100193|gb|EFI91607.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
          Length = 1361

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)

Query: 118 SCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           + G GLNLQ    +++F S W    DL + Q    RIG T        +AV +   I + 
Sbjct: 883 AGGLGLNLQTADTVIIFDSDWNPHADL-QAQDRAHRIGQT--------KAVLILRFITEK 933

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +++E + QR R K  I   ++ A
Sbjct: 934 SVEEAMYQRARYKLDIDGKVIQA 956


>gi|228923978|ref|ZP_04087255.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835777|gb|EEM81141.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228955491|ref|ZP_04117496.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804283|gb|EEM50897.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|326431158|gb|EGD76728.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 1797

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNLQ    ++++ S W     HQ +  +    R  + G  R V V+ L+  N+++E 
Sbjct: 1199 GLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQTREVRVFRLVTVNSVEER 1252

Query: 180  VLQRLRTKSTIQDLLLNALK 199
            +L+R + K  +   ++ A K
Sbjct: 1253 ILERAKYKLDVDQKVIQAGK 1272


>gi|302916021|ref|XP_003051821.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
 gi|256732760|gb|EEU46108.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
          Length = 1427

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 951  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 1004

Query: 178  ELVLQRLRTK 187
            E +L+R R K
Sbjct: 1005 EKILERARFK 1014


>gi|228961502|ref|ZP_04123113.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798216|gb|EEM45218.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|58266612|ref|XP_570462.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110952|ref|XP_775940.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258606|gb|EAL21293.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226695|gb|AAW43155.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 818

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY      TI+E 
Sbjct: 657 GCGINL-IGANRLVLFDPDWNPASDQQALARVW-----RDGQKKECFVYRFQTTGTIEEK 710

Query: 180 VLQR 183
           + QR
Sbjct: 711 IFQR 714


>gi|229147777|ref|ZP_04276120.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
 gi|228635790|gb|EEK92277.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229193493|ref|ZP_04320440.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
 gi|228590025|gb|EEK47897.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|166240632|ref|XP_001732968.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988704|gb|EDR41103.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1838

 Score = 37.0 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    ++ +    WW+    +Q I+R+      + G  + V V   + +++I+E 
Sbjct: 1751 GLGLNLVAASHVFLM-DPWWNPSTEEQAIDRV-----YRIGQNKNVNVIRFLIKDSIEER 1804

Query: 180  VLQRLRTKSTIQDLLLNALKKET 202
            +L   ++K  +    LN +KK+T
Sbjct: 1805 ILNLQKSKKDLAKEALNTMKKQT 1827


>gi|156369786|ref|XP_001628155.1| predicted protein [Nematostella vectensis]
 gi|156215124|gb|EDO36092.1| predicted protein [Nematostella vectensis]
          Length = 756

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG---FKRAVFVYYLIAQNTI 176
           G GLNL  G N LV F   W+     Q + R+    Q++         VF+Y L++  TI
Sbjct: 582 GCGLNL-IGANRLVMFDPDWNPANDDQAMARVWRDGQKKKAIFDLLLQVFIYRLLSTGTI 640

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E + QR   K  +   +++
Sbjct: 641 EEKIFQRQAHKKALSSCVVD 660


>gi|229542511|ref|ZP_04431571.1| SNF2-related protein [Bacillus coagulans 36D1]
 gi|229326931|gb|EEN92606.1| SNF2-related protein [Bacillus coagulans 36D1]
          Length = 933

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F  D+  L  + P+     K    I+++     P+      + G GLNL    N ++ + 
Sbjct: 803 FGLDVPFLNGSMPKA----KRDQLIRDFQNKAFPVFLLSLKAGGTGLNLTA-ANHVIHYD 857

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+       +E     R  + G +R V V+ LIA  T++E +   L  K  + D ++ 
Sbjct: 858 RWWN-----PAVENQATDRAHRIGQQRFVHVHKLIATGTLEEKIDAMLEKKQALNDEIIQ 912

Query: 197 A 197
           +
Sbjct: 913 S 913


>gi|228968365|ref|ZP_04129360.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791331|gb|EEM38938.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229153405|ref|ZP_04281583.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
 gi|228630009|gb|EEK86660.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|126665998|ref|ZP_01736978.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
 gi|126629320|gb|EAZ99937.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
          Length = 942

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ   +I+V + L W+     ++++RIG  R  + G K+ V V+ L + +T D
Sbjct: 594 AGGEGINLQRKCHIMVNYDLPWN---PMRLVQRIG--RLYRYGQKKRVVVFNLHSPDTAD 648

Query: 178 ELVLQRLRTK 187
           E V++ + T+
Sbjct: 649 EQVMELMYTR 658


>gi|326473788|gb|EGD97797.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
 gi|326485394|gb|EGE09404.1| SNF2 family helicase/ATPase PasG [Trichophyton equinum CBS 127.97]
          Length = 861

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + TI
Sbjct: 697 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTI 747

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 748 EQTLLERAGSKRRLEKLVI 766


>gi|322701606|gb|EFY93355.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Metarhizium acridum CQMa 102]
          Length = 1416

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 926 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 979

Query: 178 ELVLQRLRTK 187
           E +L+R R K
Sbjct: 980 EKILERARFK 989


>gi|229072708|ref|ZP_04205910.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
 gi|229181505|ref|ZP_04308833.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228602080|gb|EEK59573.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228710684|gb|EEL62657.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|224125208|ref|XP_002329920.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222871157|gb|EEF08288.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2332

 Score = 37.0 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1123 IARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1176

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1177 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1213


>gi|149248412|ref|XP_001528593.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448547|gb|EDK42935.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1926

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +++++
Sbjct: 1325 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITEDSVE 1378

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1379 EMILERAHAKLEIDGKVIQAGK 1400


>gi|56421797|ref|YP_149115.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56381639|dbj|BAD77547.1| DNA/RNA helicase (SNF2 family) [Geobacillus kaustophilus HTA426]
          Length = 919

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 803 VDEFQAKKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAYRIG 856

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + D++
Sbjct: 857 QTKFVHVHKLITTGTIEEKIDEMLEQKQALADVI 890


>gi|322707206|gb|EFY98785.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Metarhizium anisopliae ARSEF 23]
          Length = 1416

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 926 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 979

Query: 178 ELVLQRLRTK 187
           E +L+R R K
Sbjct: 980 EKILERARFK 989


>gi|312068394|ref|XP_003137194.1| BRM protein [Loa loa]
 gi|307767650|gb|EFO26884.1| BRM protein [Loa loa]
          Length = 619

 Score = 37.0 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNLQ    +++F S W     HQ M  +    R  + G  R V V  L+  N+I+E 
Sbjct: 189 GLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQSREVRVLRLVTVNSIEEK 242

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           +L   R K  + + ++ A K
Sbjct: 243 ILAAARYKLNVDEKVIQAGK 262


>gi|229082458|ref|ZP_04214921.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
 gi|228700890|gb|EEL53413.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|294659312|ref|XP_461680.2| DEHA2G03102p [Debaryomyces hansenii CBS767]
 gi|199433866|emb|CAG90128.2| DEHA2G03102p [Debaryomyces hansenii]
          Length = 1590

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +++++
Sbjct: 1095 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITEDSVE 1148

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1149 EMILERAHAKLEIDGKVIQAGK 1170


>gi|67523009|ref|XP_659565.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|40745970|gb|EAA65126.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|259487320|tpe|CBF85901.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_4G10830)
            [Aspergillus nidulans FGSC A4]
          Length = 1502

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++     + +   +W      Q  IE   + R  + G  R VFV  L+ ++T+++
Sbjct: 941  ASHGLHIAQASRVYIVNPIW------QPNIESQAIKRAHRIGQTRPVFVETLVLRDTLED 994

Query: 179  LVLQRLRTKSTIQ---DLL 194
             +LQR +  + ++   DLL
Sbjct: 995  KILQRRKAMADVEIQNDLL 1013


>gi|326943035|gb|AEA18931.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 918

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|239828513|ref|YP_002951137.1| non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
 gi|239808806|gb|ACS25871.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
          Length = 925

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 809 VEEFQARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + D++
Sbjct: 863 QTKFVHVHKLITVGTIEEKIDEMLEQKQALADII 896


>gi|228911082|ref|ZP_04074889.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
 gi|228848586|gb|EEM93433.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229130493|ref|ZP_04259449.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
 gi|228652832|gb|EEL08714.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
          Length = 856

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229141981|ref|ZP_04270506.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
 gi|228641270|gb|EEK97576.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
          Length = 855

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|195395955|ref|XP_002056599.1| GJ10137 [Drosophila virilis]
 gi|194143308|gb|EDW59711.1| GJ10137 [Drosophila virilis]
          Length = 1061

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N+ + P  +L     + G GLNL  G N L+ F L W+ +   Q  +RI      +
Sbjct: 952  VNEFNDERNPKRILLLSLTAGGVGLNL-IGANHLILFDLHWNPQLEAQAQDRI-----YR 1005

Query: 159  AGFKRAVFVYYLIAQNTIDELV 180
             G K+ V +Y ++  +T+++ +
Sbjct: 1006 VGQKKDVIIYKIVCLDTVEQRI 1027


>gi|24581780|ref|NP_608883.1| Marcal1 [Drosophila melanogaster]
 gi|75027220|sp|Q9VMX6|SMAL1_DROME RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1
 gi|22945611|gb|AAF52182.2| Marcal1 [Drosophila melanogaster]
 gi|39752623|gb|AAR30193.1| RE44811p [Drosophila melanogaster]
 gi|220948472|gb|ACL86779.1| Marcal1-PA [synthetic construct]
          Length = 755

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQ 156
           T Q+ +  K+ LL     +C  G+ L     I+VF  L W+   L + +    RIG T+ 
Sbjct: 580 TFQKKSSCKVALLSLK--ACNSGITLT-AAEIIVFAELDWNPSTLAQAESRAHRIGQTK- 635

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   V   YLIA NT D+++   L+ K  +
Sbjct: 636 -------PVICRYLIAHNTADDIIWNMLKNKQEV 662


>gi|46125857|ref|XP_387482.1| hypothetical protein FG07306.1 [Gibberella zeae PH-1]
          Length = 1427

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 945  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 998

Query: 178  ELVLQRLRTK 187
            E +L+R R K
Sbjct: 999  EKILERARFK 1008


>gi|49481223|ref|YP_039235.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332779|gb|AAT63425.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 918

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|290976692|ref|XP_002671073.1| predicted protein [Naegleria gruberi]
 gi|284084639|gb|EFC38329.1| predicted protein [Naegleria gruberi]
          Length = 998

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + E+NE  KI        + G GLNL     +++  + +         I+   V R  + 
Sbjct: 779 VDEFNENEKIKCFILSSQAGGVGLNLVSASRVIIVDANF------NPSIDEQSVDRCYRI 832

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           G K  V VY LI+  TI+E + +R  +K+T+
Sbjct: 833 GQKENVIVYRLISAGTIEEYIYKRQVSKTTV 863


>gi|229112656|ref|ZP_04242192.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
 gi|228670788|gb|EEL26096.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
          Length = 856

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 743 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 796 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|138896831|ref|YP_001127284.1| helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134268344|gb|ABO68539.1| Helicase, putative [Geobacillus thermodenitrificans NG80-2]
          Length = 926

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 810 VDEFQARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAYRIG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + D++
Sbjct: 864 QTKFVHVHKLITTGTIEEKIDEMLEQKQALADVI 897


>gi|257052989|ref|YP_003130822.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691752|gb|ACV12089.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 971

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           E+N G+  LLFA  A+   G++LQ+  +I+  + L W+    +Q I RI      + G  
Sbjct: 531 EFNHGQSRLLFATDAA-SEGIDLQHSCHIMANYELPWNPNRLEQRIGRI-----HRYGQD 584

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
           R V V+  +  +T +  + + L+TK
Sbjct: 585 REVKVWNFLFDDTRESEIFEMLQTK 609


>gi|206970363|ref|ZP_03231316.1| putative helicase [Bacillus cereus AH1134]
 gi|206734940|gb|EDZ52109.1| putative helicase [Bacillus cereus AH1134]
          Length = 918

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|229187464|ref|ZP_04314606.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
 gi|228595985|gb|EEK53663.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
          Length = 855

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|217962731|ref|YP_002341307.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|222098706|ref|YP_002532764.1| helicase, putative [Bacillus cereus Q1]
 gi|217063978|gb|ACJ78228.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|221242765|gb|ACM15475.1| helicase, putative [Bacillus cereus Q1]
          Length = 918

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|296331256|ref|ZP_06873728.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305676243|ref|YP_003867915.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151371|gb|EFG92248.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305414487|gb|ADM39606.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 922

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++ + + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VEKFQKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 863 QERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|196250406|ref|ZP_03149098.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
 gi|196210065|gb|EDY04832.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
          Length = 926

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 810 VDEFQARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAYRIG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + D++
Sbjct: 864 QTKFVHVHKLITTGTIEEKIDEMLEQKQALADVI 897


>gi|50294289|ref|XP_449556.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528870|emb|CAG62532.1| unnamed protein product [Candida glabrata]
          Length = 1730

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1200 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRIIRLITTNSVE 1253

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1254 EVILERAYKKLDIDGKVIQAGK 1275


>gi|315048045|ref|XP_003173397.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
 gi|311341364|gb|EFR00567.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
          Length = 767

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + TI
Sbjct: 603 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTI 653

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 654 EQTLLERAGSKRRLEKLVI 672


>gi|228930248|ref|ZP_04093256.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829389|gb|EEM75018.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|229158809|ref|ZP_04286867.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
 gi|228624793|gb|EEK81562.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|218200306|gb|EEC82733.1| hypothetical protein OsI_27432 [Oryza sativa Indica Group]
          Length = 1770

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            GK  +L A   +C  G++L  G + LV     W+  + +Q I      R  + G +R V+
Sbjct: 1648 GKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI-----ARAFRRGQERTVY 1701

Query: 167  VYYLIAQNTIDE 178
            VY L+A  T +E
Sbjct: 1702 VYLLVASGTWEE 1713


>gi|218900369|ref|YP_002448780.1| putative helicase [Bacillus cereus G9842]
 gi|218544351|gb|ACK96745.1| putative helicase [Bacillus cereus G9842]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|296505669|ref|YP_003667369.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296326721|gb|ADH09649.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|228917853|ref|ZP_04081390.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841789|gb|EEM86899.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|206976890|ref|ZP_03237792.1| SNF2 family helicase [Bacillus cereus H3081.97]
 gi|206744856|gb|EDZ56261.1| SNF2 family helicase [Bacillus cereus H3081.97]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|30023277|ref|NP_834908.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|29898838|gb|AAP12109.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|332025027|gb|EGI65214.1| Transcription termination factor 2 [Acromyrmex echinatior]
          Length = 916

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLNL  GGN L+ F + W+ +   Q  +RI      + G  + V+VY  
Sbjct: 816 ILLLSLTAGGVGLNL-IGGNHLLLFDIHWNPQLETQAQDRI-----YRFGQTKNVYVYKF 869

Query: 171 IAQNTIDELV 180
           I  NTI+E +
Sbjct: 870 ICVNTIEERI 879


>gi|218233440|ref|YP_002370024.1| putative helicase [Bacillus cereus B4264]
 gi|218161397|gb|ACK61389.1| putative helicase [Bacillus cereus B4264]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+D   I+E+  G   +      + G GLNL    N ++ +  WW+       +E     
Sbjct: 805 DRDKM-IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATD 857

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 858 RAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|168061453|ref|XP_001782703.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162665796|gb|EDQ52468.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2113

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 12/86 (13%)

Query: 120  GHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            G G+NL     ++++   F+ + DL+            R  + G +  V VY LI + ++
Sbjct: 1277 GLGINLPSADTVIIYDPDFNPFVDLQAQ---------ARAHRIGQRNVVLVYQLITKCSV 1327

Query: 177  DELVLQRLRTKSTIQDLLLNALKKET 202
            +E + +R R K  +++L++++ +K+T
Sbjct: 1328 EEKITERSRQKLAMENLVMSSSEKDT 1353


>gi|229094348|ref|ZP_04225422.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
 gi|228689026|gb|EEL42851.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|225867216|ref|YP_002752594.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786779|gb|ACO26996.1| putative helicase [Bacillus cereus 03BB102]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|222637735|gb|EEE67867.1| hypothetical protein OsJ_25679 [Oryza sativa Japonica Group]
          Length = 1390

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            GK  +L A   +C  G++L  G + LV     W+  + +Q I      R  + G +R V+
Sbjct: 1268 GKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI-----ARAFRRGQERTVY 1321

Query: 167  VYYLIAQNTIDE 178
            VY L+A  T +E
Sbjct: 1322 VYLLVASGTWEE 1333


>gi|47219154|emb|CAG01817.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1805

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 132  LVFFSLWWDLEEHQQMIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            ++F+   W+    QQ ++R   +G T+Q        V VY LI Q TI+E +LQR + KS
Sbjct: 1392 VIFYDSDWNPTVDQQAMDRAHRLGQTKQ--------VTVYRLICQGTIEERILQRAKEKS 1443

Query: 189  TI 190
             +
Sbjct: 1444 EV 1445


>gi|256272521|gb|EEU07500.1| Snf2p [Saccharomyces cerevisiae JAY291]
          Length = 1706

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1168 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1221

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1222 EVILERAYKKLDIDGKVIQAGK 1243


>gi|151945372|gb|EDN63615.1| transcriptional regulator [Saccharomyces cerevisiae YJM789]
          Length = 1706

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1168 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1221

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1222 EVILERAYKKLDIDGKVIQAGK 1243


>gi|30265272|ref|NP_847649.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47530804|ref|YP_022153.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188082|ref|YP_031335.1| helicase [Bacillus anthracis str. Sterne]
 gi|65317216|ref|ZP_00390175.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           anthracis str. A2012]
 gi|165870042|ref|ZP_02214699.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167636534|ref|ZP_02394830.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167641825|ref|ZP_02400066.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170689422|ref|ZP_02880614.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170708948|ref|ZP_02899380.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177654075|ref|ZP_02936085.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190567743|ref|ZP_03020655.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227818007|ref|YP_002818016.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229602583|ref|YP_002869461.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254686332|ref|ZP_05150191.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254735172|ref|ZP_05192881.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254737051|ref|ZP_05194756.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744378|ref|ZP_05202058.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755680|ref|ZP_05207713.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759588|ref|ZP_05211613.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30259950|gb|AAP29135.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47505952|gb|AAT34628.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182009|gb|AAT57385.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714365|gb|EDR19885.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167510237|gb|EDR85642.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167528066|gb|EDR90866.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170126113|gb|EDS95008.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170666649|gb|EDT17420.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172080958|gb|EDT66037.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190561159|gb|EDV15132.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003185|gb|ACP12928.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229266991|gb|ACQ48628.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|324329191|gb|ADY24451.1| helicase, putative [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKDVLEKHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|313499735|gb|ADR61101.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            BIRD-1]
          Length = 1110

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    +Q++ +G+  +      + G GLNL    + ++ F  WW+     Q  +R
Sbjct: 980  GDTRDRR-TPVQQFQQGESEVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPASENQATDR 1037

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFV+ LI + T++E +    + K+ +   LL+ 
Sbjct: 1038 A-----YRIGQDKPVFVFKLITRGTVEEKIQLLQQEKAALAASLLDG 1079


>gi|228948966|ref|ZP_04111239.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810722|gb|EEM57070.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|190407590|gb|EDV10857.1| transcription regulatory protein SNF2 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1706

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1168 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1221

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1222 EVILERAYKKLDIDGKVIQAGK 1243


>gi|228213|prf||1718318A GAM1 gene
          Length = 1703

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1165 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1218

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1219 EVILERAYKKLDIDGKVIQAGK 1240


>gi|291486201|dbj|BAI87276.1| hypothetical protein BSNT_05537 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 922

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++   + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VEKFQRKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 863 QERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|316972508|gb|EFV56185.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1052

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL  GGN L    L W+  +  Q  +RI      + G  R V +Y  +   TI+E 
Sbjct: 940  GVGLNL-TGGNHLFLMDLHWNPAQELQASDRIN-----RIGQTRDVVIYKTVCSGTIEEK 993

Query: 180  VLQRLRTKSTIQDLLLNALKKE 201
            VL+    K  + + +L+ + ++
Sbjct: 994  VLKLQEEKLALAESVLSGVARQ 1015


>gi|302309194|ref|NP_986455.2| AGL212Wp [Ashbya gossypii ATCC 10895]
 gi|299788244|gb|AAS54279.2| AGL212Wp [Ashbya gossypii ATCC 10895]
          Length = 903

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNL  G + L+ F   W+     Q + RI      + G K+  F+Y L+    ID
Sbjct: 695 SGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCFIYRLVTTGCID 748

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K+ +    L+
Sbjct: 749 EKIFQRQLMKNNLSKKFLD 767


>gi|190348672|gb|EDK41171.2| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI +++++
Sbjct: 389 AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRIIRLITEDSVE 442

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 443 EMILERAHAKLEIDGKVIQAGK 464


>gi|170760693|ref|YP_001787071.1| Snf2/Rad54 family helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407682|gb|ACA56093.1| helicase, SNF2/RAD54 family [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1077

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G
Sbjct: 965  VKDFNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWN-----PAVEDQASDRAHRIG 1018

Query: 161  FKRAVFVYYLIAQNTIDE 178
             K+ V +  LIA+ TI+E
Sbjct: 1019 QKKTVEIIRLIAKGTIEE 1036


>gi|146412556|ref|XP_001482249.1| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI +++++
Sbjct: 389 AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRIIRLITEDSVE 442

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 443 EMILERAHAKLEIDGKVIQAGK 464


>gi|254724328|ref|ZP_05186112.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|260806897|ref|XP_002598320.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
 gi|229283592|gb|EEN54332.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
          Length = 490

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++ F   W+     Q I R+      + G  + VFVY  +AQ T++E 
Sbjct: 394 GLGINL-VGANRVIIFDASWNPSHDVQSIFRV-----YRFGQGKPVFVYRFLAQGTMEEK 447

Query: 180 VLQRLRTKSTI 190
           +  R  TK ++
Sbjct: 448 IYDRQVTKQSL 458


>gi|6324864|ref|NP_014933.1| Snf2p [Saccharomyces cerevisiae S288c]
 gi|134589|sp|P22082|SNF2_YEAST RecName: Full=Transcription regulatory protein SNF2; AltName:
            Full=ATP-dependent helicase SNF2; AltName:
            Full=Regulatory protein GAM1; AltName: Full=Regulatory
            protein SWI2; AltName: Full=SWI/SNF complex component
            SNF2; AltName: Full=Transcription factor TYE3
 gi|4500|emb|CAA40969.1| GAM1/SNF2 protein [Saccharomyces cerevisiae]
 gi|172632|gb|AAA35059.1| SNF2protein [Saccharomyces cerevisiae]
 gi|806532|dbj|BAA14423.1| RIC1 [Saccharomyces cerevisiae]
 gi|1279713|emb|CAA61793.1| regulatory protein gam1 [Saccharomyces cerevisiae]
 gi|1420644|emb|CAA99517.1| SNF2 [Saccharomyces cerevisiae]
 gi|285815161|tpg|DAA11054.1| TPA: Snf2p [Saccharomyces cerevisiae S288c]
          Length = 1703

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1165 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 1218

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1219 EVILERAYKKLDIDGKVIQAGK 1240


>gi|307107878|gb|EFN56119.1| hypothetical protein CHLNCDRAFT_144734 [Chlorella variabilis]
          Length = 1822

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     ++++ S W     H  +  +    R  + G    V VY L+A+ T++E 
Sbjct: 699 GLGINLATADTVVLYDSDW---NPHNDLQAQ---ARAHRLGQSSGVMVYRLVARATVEER 752

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           ++QR + K  ++ +++  +K++
Sbjct: 753 MMQRAKGKLVLEHVVVRKMKRQ 774


>gi|229124753|ref|ZP_04253933.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
 gi|228658730|gb|EEL14390.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|207340928|gb|EDZ69127.1| YOR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 824

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 286 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTNSVE 339

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 340 EVILERAYKKLDIDGKVIQAGK 361


>gi|16080681|ref|NP_391509.1| ATP-binding SNF2 helicase or protein kinase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311584|ref|ZP_03593431.1| hypothetical protein Bsubs1_19616 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315911|ref|ZP_03597716.1| hypothetical protein BsubsN3_19532 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320824|ref|ZP_03602118.1| hypothetical protein BsubsJ_19485 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325110|ref|ZP_03606404.1| hypothetical protein BsubsS_19646 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81345827|sp|P94593|YWQA_BACSU RecName: Full=Uncharacterized ATP-dependent helicase ywqA
 gi|2636153|emb|CAB15645.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 922

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++   + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VEKFQRKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 863 QERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|327198375|ref|YP_004306949.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
 gi|314912677|gb|ADT64068.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
          Length = 545

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T DK     +  N  K  ++     + G G  L     ++   S W   E+ Q     
Sbjct: 429 GETADKFNEIEEFMNHRKASVILGTIGALGTGFTLTKADTVIFLDSPWTRAEKDQ----- 483

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G K +V +Y L+A+ T+DE +   +  K  + D +++ 
Sbjct: 484 -AEDRCHRIGAKSSVTIYTLVAKGTVDERIEDLIERKGELADYIVDG 529


>gi|291548670|emb|CBL24932.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus torques
           L2-14]
          Length = 451

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 24/156 (15%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEG 107
           H EK++ L  ++E +    +I+ Y+F ++L  +QK           ++     +  +++ 
Sbjct: 305 HKEKLEGLRDLVE-STEDRLIIFYNFTAELEAMQKKLADLNRPYSVVNGSKKDLTAYDQA 363

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSL--------WWDLEEHQQMIERIGVTRQRQA 159
              + F    +   G N Q   N +++F+L         W  E+ ++ I RIG     QA
Sbjct: 364 DDSITFIQYQAGAMGGNYQ-KANKIIYFTLPLGKGSCDMW--EQSKKRIHRIG-----QA 415

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +  F YYL+ + T++E  L  L+    + D L 
Sbjct: 416 ---KPCFYYYLLVKGTVEERNLAALKEGKELTDELF 448


>gi|211997720|gb|ACJ14806.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 3   ARLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKD 50


>gi|196036261|ref|ZP_03103659.1| putative helicase [Bacillus cereus W]
 gi|218906422|ref|YP_002454256.1| putative helicase [Bacillus cereus AH820]
 gi|195991053|gb|EDX55023.1| putative helicase [Bacillus cereus W]
 gi|218539910|gb|ACK92308.1| putative helicase [Bacillus cereus AH820]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|47569742|ref|ZP_00240415.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
 gi|47553593|gb|EAL11971.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|328869586|gb|EGG17963.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1429

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            T Q  N G+  +L     + G GLNL    +++V    WW+     Q I+R+      + 
Sbjct: 1273 TFQTTN-GEPRILLISLKAGGVGLNLTRANHVIVL-DPWWNSSAEDQAIDRV-----HRI 1325

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V+V   + Q +I+E VL+  R K ++   +L+
Sbjct: 1326 GQLKHVYVKKYVIQASIEERVLELQRAKESMTKAILD 1362


>gi|321313173|ref|YP_004205460.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
 gi|320019447|gb|ADV94433.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
          Length = 922

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++   + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 809 VEKFQRKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 862

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 863 QERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|242045708|ref|XP_002460725.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
 gi|241924102|gb|EER97246.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
          Length = 614

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 99  CTIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  
Sbjct: 348 AAIARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAH 401

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 402 RIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 440


>gi|134288423|ref|YP_001110586.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134133073|gb|ABO59783.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 948

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +   ++PLL       G G NL    + ++ +  WW+     Q ++R       + G 
Sbjct: 824 ERFQNQEVPLLLCTLKVGGVGHNLT-AADTVILYDPWWNPAAENQAMDR-----AHRIGQ 877

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A+FVY LI   +I+E ++     K  +   +L+
Sbjct: 878 TKALFVYKLIMAGSIEERIVAMQERKDALMKAILD 912


>gi|310791654|gb|EFQ27181.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1458

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 963  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 1016

Query: 178  ELVLQRLRTK 187
            E +L+R R K
Sbjct: 1017 EKILERARFK 1026


>gi|52140319|ref|YP_086511.1| SNF2 family helicase [Bacillus cereus E33L]
 gi|51973788|gb|AAU15338.1| SNF2 family helicase [Bacillus cereus E33L]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|42784409|ref|NP_981656.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42740341|gb|AAS44264.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKDVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|148548802|ref|YP_001268904.1| non-specific serine/threonine protein kinase [Pseudomonas putida F1]
 gi|148512860|gb|ABQ79720.1| Non-specific serine/threonine protein kinase [Pseudomonas putida F1]
          Length = 1105

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G T D+    +Q++ +G+  +      + G GLNL    + ++ F  WW+     Q  +R
Sbjct: 980  GDTRDRR-TPVQQFQQGESEVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPASENQATDR 1037

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + VFV+ LI + T++E +    + K+ +   LL+ 
Sbjct: 1038 A-----YRIGQDKPVFVFKLITRGTVEEKIQLLQQEKAALAASLLDG 1079


>gi|302500427|ref|XP_003012207.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
 gi|291175764|gb|EFE31567.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
          Length = 881

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + TI
Sbjct: 717 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTI 767

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 768 EQTLLERAGSKRRLEKLVI 786


>gi|104781117|ref|YP_607615.1| SNF2 family DNA helicase [Pseudomonas entomophila L48]
 gi|95110104|emb|CAK14811.1| putative DNA helicases, SNF2 family [Pseudomonas entomophila L48]
          Length = 946

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A+NTI+
Sbjct: 852 AGGSGLNL-TAADYVIHLDPWWN-----PAVEDQASDRAYRIGQQRPVTIYRLVAENTIE 905

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E ++     K  + D LL  
Sbjct: 906 EQIVALHARKRDLADSLLEG 925


>gi|302656074|ref|XP_003019794.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
 gi|291183564|gb|EFE39170.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
          Length = 881

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + TI
Sbjct: 717 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTI 767

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 768 EQTLLERAGSKRRLEKLVI 786


>gi|168000545|ref|XP_001752976.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162695675|gb|EDQ82017.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 653

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + ++ +L A   +CG G++L     +++   LW         + R  ++R  + G +R 
Sbjct: 524 TDPEVRVLCASIKACGEGISLVGASRVILLEVLW------NPSVPRQAISRAFRIGQQRK 577

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V VY LIA  T +E+ +    T+
Sbjct: 578 VVVYRLIAAGTYEEMNMHAAATR 600


>gi|134055454|emb|CAK43969.1| unnamed protein product [Aspergillus niger]
          Length = 1163

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 42/149 (28%)

Query: 81  LARLQKA------FPQ-GRTLD--KDPCTIQEWNEGKIPLLFAH------------PAS- 118
           LAR+QK       F Q  R LD  +D C  +E+N  +I    AH            P S 
Sbjct: 510 LARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDRIAAIDEYNKPGSE 569

Query: 119 ----------CGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVF 166
                      G G+NL     +++F S W    + Q M    RIG T+Q        V 
Sbjct: 570 KFIFLLTTRAGGLGINLTTADIVVLFDSDWNPQADLQAMDRAHRIGQTKQ--------VV 621

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+  + +N I+E VL+R   K  +  L++
Sbjct: 622 VFRFVTENAIEEKVLERAAQKLRLDQLVI 650


>gi|118480284|ref|YP_897435.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196045586|ref|ZP_03112816.1| putative helicase [Bacillus cereus 03BB108]
 gi|118419509|gb|ABK87928.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196023417|gb|EDX62094.1| putative helicase [Bacillus cereus 03BB108]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|196039505|ref|ZP_03106810.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196029665|gb|EDX68267.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|228936530|ref|ZP_04099326.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823118|gb|EEM68954.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 823 MLERKQSLNNAVITS 837


>gi|50312307|ref|XP_456186.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645322|emb|CAG98894.1| KLLA0F24838p [Kluyveromyces lactis]
          Length = 1062

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G K+ VFVY  + +N I+
Sbjct: 520 AGGLGINLVTADTVVLYDSDWNPQADLQAM------DRAHRIGQKKQVFVYRFVTENAIE 573

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E V++R   K  +  L++
Sbjct: 574 EKVIERAAQKLRLDQLVI 591


>gi|87200188|ref|YP_497445.1| helicase-like [Novosphingobium aromaticivorans DSM 12444]
 gi|87135869|gb|ABD26611.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 922

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E K+ ++ A  A+C  GLNLQ  G  L+   L W+    +Q I RI    +R    +R V
Sbjct: 763 ERKLRVVCATDAAC-EGLNLQTLGT-LINVDLPWNPSRLEQRIGRI----KRYGQQRREV 816

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +  L+   TIDE V QRL  +  +QD
Sbjct: 817 DMANLVYSGTIDERVYQRLSER--MQD 841


>gi|282852065|ref|ZP_06261423.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
 gi|282556825|gb|EFB62429.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
          Length = 424

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLN+Q    +++    W    E+Q       ++R  + G  R V VY L
Sbjct: 300 VLLVQIDAGGFGLNIQAANRVILCEPQWKPSTENQ------AISRAYRMGQNRNVMVYRL 353

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + + ++DE +++ +  K  I
Sbjct: 354 LTKESVDETMMEIIHEKEDI 373


>gi|115474249|ref|NP_001060723.1| Os07g0692600 [Oryza sativa Japonica Group]
 gi|113612259|dbj|BAF22637.1| Os07g0692600 [Oryza sativa Japonica Group]
          Length = 475

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L A   +C  G++L  G + LV     W+  + +Q I      R  + G +R V+
Sbjct: 353 GKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI-----ARAFRRGQERTVY 406

Query: 167 VYYLIAQNTIDE 178
           VY L+A  T +E
Sbjct: 407 VYLLVASGTWEE 418


>gi|46125779|ref|XP_387443.1| hypothetical protein FG07267.1 [Gibberella zeae PH-1]
          Length = 1895

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 90   QGRTLD----KDPCTI-----QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            QGRT+     K P  +     +++N+G   +     A+ G GLN+ +G N +V F +   
Sbjct: 1325 QGRTVSRMDGKTPVAVRQQQVKDFNQGSKEVFLISTAAGGVGLNI-HGANRVVIFDI--- 1380

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               H    E+  V R  + G ++ VFVY  +   T ++
Sbjct: 1381 --RHNPSHEQQAVGRAYRIGQQKKVFVYRFMVAGTFED 1416


>gi|301056711|ref|YP_003794922.1| SNF2 family helicase [Bacillus anthracis CI]
 gi|300378880|gb|ADK07784.1| SNF2 family helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 918

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 831

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 832 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 885

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++ +
Sbjct: 886 MLERKQSLNNAVITS 900


>gi|228903720|ref|ZP_04067840.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
 gi|228855988|gb|EEN00528.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
          Length = 856

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+E+  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 748 IEEFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 801

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 802 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|1763712|emb|CAB05939.1| ywqA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 867

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++   + P L     + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 754 VEKFQRKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 807

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 808 QERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 844


>gi|23100530|ref|NP_693997.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22778763|dbj|BAC15031.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1056

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 91   GRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G+T  K+   + E +N G+  +      + G GLNL     + + F LWW+       +E
Sbjct: 936  GQTSSKERVEMSERFNHGENDIFLISLKAGGTGLNLTGADTV-ILFDLWWN-----PAVE 989

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                 R  + G K+ V V  L+ + TI+E +
Sbjct: 990  DQATGRAHRFGQKKVVQVIRLVTEGTIEEKI 1020


>gi|186687055|ref|YP_001870198.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186469358|gb|ACC85157.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A++TI+E 
Sbjct: 1313 GTGLNLT-AADYVIHTDPWWN-----PAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEEK 1366

Query: 180  VLQRLRTKSTIQDLLLNA 197
            ++Q    K  + D LL  
Sbjct: 1367 IVQLHHQKRDLADSLLEG 1384


>gi|149174125|ref|ZP_01852753.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
 gi|148847105|gb|EDL61440.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
          Length = 642

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           LL     +   GLNLQ+ G + + F  WW+       IE   + R  + G K  V V   
Sbjct: 520 LLLMSYGTGAVGLNLQFAGYVFL-FDRWWN-----PAIEDQAINRAHRIGQKTQVIVTKF 573

Query: 171 IAQNTIDE---LVLQRLR 185
           +  NTI+E   +VL++ R
Sbjct: 574 VCNNTIEERIDMVLEQKR 591


>gi|312074579|ref|XP_003140033.1| hypothetical protein LOAG_04448 [Loa loa]
 gi|307764800|gb|EFO24034.1| hypothetical protein LOAG_04448 [Loa loa]
          Length = 1841

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M      +R  + G K+ V +Y L+ + +++E 
Sbjct: 890 GLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQKKQVNIYRLVTKASVEEE 943

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 944 IVERAKRKLVLDHLIIQRM 962


>gi|225850307|ref|YP_002730541.1| helicase, Snf2 family [Persephonella marina EX-H1]
 gi|225646235|gb|ACO04421.1| helicase, Snf2 family [Persephonella marina EX-H1]
          Length = 562

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G GL L    +  +FF L W+  +  Q  +RI      + G K  + +Y  + +NT+
Sbjct: 461 TSAGEGLTLT-ESSYAIFFDLHWNPAKIWQAEDRI-----HRIGQKNKINIYNFVMRNTV 514

Query: 177 DELVLQRLRTKSTIQDLLLNALKK 200
           +E +LQ+L  K  +   +++ ++K
Sbjct: 515 EERILQKLEEKRAMIQNVIDGIEK 538


>gi|170577655|ref|XP_001894090.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158599485|gb|EDP37070.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 805

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N ++ F   W+     Q + RI     RQ G ++   ++ LI   T+DE 
Sbjct: 558 GLGLNL-VGANRMILFDSDWNPAVDMQAMARIW----RQ-GQEKPCHIFRLITAGTVDEK 611

Query: 180 VLQRLRTKSTIQDLL 194
           +LQR   KS++  ++
Sbjct: 612 ILQRQIKKSSLNTIV 626


>gi|302813632|ref|XP_002988501.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
 gi|300143608|gb|EFJ10297.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
          Length = 950

 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    N+ +    WW+    +Q ++R+      + G  R V V+ LIA ++I+
Sbjct: 857 AAGVGLNLVTASNVFMM-DPWWNPAVEEQAMDRV-----HRLGQTRDVHVFRLIATDSIE 910

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +LQ    K     +   AL KE
Sbjct: 911 ERLLQVQEKKRAYAQI---ALGKE 931


>gi|257052779|ref|YP_003130612.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691542|gb|ACV11879.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 952

 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 122 GLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
           G+NLQY  N ++ + L W+   LE+    ++R G  R +       VF+  ++  + +D 
Sbjct: 565 GMNLQYAANQVIHYELPWNPNRLEQRNGRVDRYGQKRDK-------VFIRTMVVDDPMDR 617

Query: 179 LVLQRLRTKS 188
            VL +L  K+
Sbjct: 618 TVLTKLIKKA 627


>gi|170584903|ref|XP_001897230.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158595354|gb|EDP33914.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 1595

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M      +R  + G K+ V +Y L+ + +++E 
Sbjct: 812 GLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQKKQVNIYRLVTKASVEEE 865

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 866 IVERAKRKLVLDHLIIQRM 884


>gi|159028978|emb|CAO87439.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1390

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++    WW+       +E     R  + G KR V +Y L+A++TI+
Sbjct: 1298 AGGTGLNLT-AADYVIHLDPWWN-----PAVEDQASDRAHRIGQKRPVTIYRLVAKDTIE 1351

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E ++     K  + D LL  
Sbjct: 1352 EKIVDLHHHKRDLADSLLEG 1371


>gi|211906288|gb|ACJ11662.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+
Sbjct: 6   ARLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKD 53


>gi|255565329|ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223537108|gb|EEF38742.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 2257

 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 100  TIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  +
Sbjct: 1046 SISRFNQDKSRFVFLLSTRSCGLGINLATADTVVIYDS---DFNPHADIQ---AMNRAHR 1099

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1100 IGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1137


>gi|134083941|emb|CAK43037.1| unnamed protein product [Aspergillus niger]
          Length = 1418

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 941  AGGLGLNLQSADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 994

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 995  EKILERAQFKLDMDGKVIQAGK 1016


>gi|109898913|ref|YP_662168.1| SNF2-related [Pseudoalteromonas atlantica T6c]
 gi|109701194|gb|ABG41114.1| SNF2-related protein [Pseudoalteromonas atlantica T6c]
          Length = 1437

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++  +  G+  +      + G GLNL    + ++    WW+       +E     R  +
Sbjct: 1325 ASVNAFQRGEGDIFLISLKAGGSGLNLT-AADYVIHMDPWWN-----PAVEEQASDRAHR 1378

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y L+ +NTI+E ++   + K  + D LL
Sbjct: 1379 IGQLRPVTIYRLVTRNTIEEKIVSLHQHKRDLADTLL 1415


>gi|257095431|ref|YP_003169072.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047955|gb|ACV37143.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 842

 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           F  G   DK    +  +N      +F    + G GLNLQ+   ++V   L W+    +Q 
Sbjct: 576 FHGGVPGDKRGALVDRFNNDPACRVFLSTDAGGVGLNLQHAAAVVVNMDLPWNPAVLEQR 635

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           I R+      + G  R V V   +A+ TI+E +L  L  K ++
Sbjct: 636 IGRV-----HRLGQTRGVQVINFVARGTIEEGMLSVLAFKQSL 673


>gi|317036939|ref|XP_001398370.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            niger CBS 513.88]
          Length = 1422

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 945  AGGLGLNLQSADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 998

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 999  EKILERAQFKLDMDGKVIQAGK 1020


>gi|311110806|ref|ZP_07712203.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
 gi|311065960|gb|EFQ46300.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
          Length = 761

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLN+Q    +++    W    E+Q       ++R  + G  R V VY L
Sbjct: 637 VLLVQIDAGGFGLNIQAANRVILCEPQWKPSTENQ------AISRAYRMGQNRNVMVYRL 690

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + + ++DE +++ +  K  I
Sbjct: 691 LTKESVDETMMEIIHEKEDI 710


>gi|242015095|ref|XP_002428209.1| Chromo domain protein, putative [Pediculus humanus corporis]
 gi|212512770|gb|EEB15471.1| Chromo domain protein, putative [Pediculus humanus corporis]
          Length = 1795

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K  V +Y L+ +N+++E 
Sbjct: 821 GLGINLATADTVIIFDSDWNPQNDLQAQ------ARAHRIGQKNQVNIYRLVTKNSVEEE 874

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 875 IIERAKKKMVLDHLVIQRM 893


>gi|12859719|dbj|BAB31751.1| unnamed protein product [Mus musculus]
          Length = 350

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 8/48 (16%)

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+G T+Q        V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 6   RLGQTKQ--------VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|156550287|ref|XP_001603076.1| PREDICTED: similar to CG2684-PA [Nasonia vitripennis]
          Length = 1032

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 24/153 (15%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS----------DLARLQKAFPQG 91
           +D+E+   +V    +K +E I+EK +   IIV   + S          D+   + A   G
Sbjct: 855 FDDERRSSKVR-AIVKTIEEILEKGDK--IIVVSQWTSFLGIVAKNLDDIEDAKYAMFTG 911

Query: 92  RTLDKDPCTI----QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               K+   I     + NE    LL +  A  G GLNL  G N L+   + W+ +   Q 
Sbjct: 912 NVAVKNRQAIVDKFNDPNEDTNILLLSLTAG-GVGLNL-VGANHLLLIDIHWNPQLESQA 969

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            +RI      + G K+ V+VY  I ++TI+E V
Sbjct: 970 QDRI-----YRFGQKKNVYVYKFICKDTIEERV 997


>gi|324500109|gb|ADY40062.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1095

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M      +R  + G K+ V +Y L+ + +++E 
Sbjct: 888 GLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQKKQVNIYRLVTKASVEEE 941

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 942 IVERAKRKLVLDHLVIQRM 960


>gi|91201478|emb|CAJ74538.1| similar to ATP-dependent RNA helicase (RNA polymerase associated
           protein) [Candidatus Kuenenia stuttgartiensis]
          Length = 886

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N   IP +     + G GLNL    ++ + F  WW+       +E     R  + G K+ 
Sbjct: 778 NREYIPYMVLSLKAGGVGLNLTEANHV-IHFDRWWN-----PAVENQATDRAFRIGQKKN 831

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
           V V+  I + TI+E +   LR K+ +
Sbjct: 832 VIVHKFITKGTIEEKINDMLREKTKL 857


>gi|297531489|ref|YP_003672764.1| SNF2-related protein [Geobacillus sp. C56-T3]
 gi|297254741|gb|ADI28187.1| SNF2-related protein [Geobacillus sp. C56-T3]
          Length = 924

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+   K P+      + G GLNL    N ++ F  WW+       +E     R  + G
Sbjct: 808 VDEFQAKKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWN-----PAVENQATDRAYRIG 861

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V+ LI   TI+E + + L  K  + D++
Sbjct: 862 QTKFVHVHKLITIGTIEEKIDEMLEQKQALADII 895


>gi|256419642|ref|YP_003120295.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256034550|gb|ACU58094.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 1250

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + +     WW+    QQ I+R       + G  + +F Y +I ++T++E 
Sbjct: 1161 GVGLNLT-AADYVYIVDPWWNPAVEQQAIDRT-----HRIGQTKNIFAYRMICKDTVEEK 1214

Query: 180  VLQ-RLRTKSTIQDLL 194
            +LQ + R KS +++++
Sbjct: 1215 ILQLQERKKSLVKEII 1230


>gi|7023894|dbj|BAA92122.1| unnamed protein product [Homo sapiens]
          Length = 350

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 8/48 (16%)

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+G T+Q        V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 6   RLGQTKQ--------VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|307136401|gb|ADN34210.1| chromatin remodeling complex subunit [Cucumis melo subsp. melo]
          Length = 2374

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1180 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1233

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1234 GQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1270


>gi|167535979|ref|XP_001749662.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771810|gb|EDQ85471.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1288

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 118 SCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           + G GLNLQ    +++F S W    DL + Q    RIG T++        V V+ L+   
Sbjct: 872 AGGLGLNLQTADTVVIFDSDWNPHQDL-QAQDRAHRIGQTKE--------VRVFRLVTVQ 922

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           +++E +L+R R K  +   ++ A K
Sbjct: 923 SVEERMLERAREKLDVDQQVIQAGK 947


>gi|322825988|gb|EFZ30789.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1044

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  +I+E 
Sbjct: 779 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSAGSIEEK 832

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 833 IYQRQVSK 840


>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
          Length = 1410

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N+   K  +  A   +C  G++L     +++   +W         +ER  ++R  +
Sbjct: 1263 INEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW------NPAVERQAISRAYR 1316

Query: 159  AGFKRAVFVYYLIAQNT 175
             G KR V+ Y+L+A+ T
Sbjct: 1317 IGQKRIVYTYHLVAKGT 1333


>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1410

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N+   K  +  A   +C  G++L     +++   +W         +ER  ++R  +
Sbjct: 1263 INEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW------NPAVERQAISRAYR 1316

Query: 159  AGFKRAVFVYYLIAQNT 175
             G KR V+ Y+L+A+ T
Sbjct: 1317 IGQKRIVYTYHLVAKGT 1333


>gi|71651467|ref|XP_814411.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70879380|gb|EAN92560.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1047

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  +I+E 
Sbjct: 779 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSAGSIEEK 832

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 833 IYQRQVSK 840


>gi|71662508|ref|XP_818260.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70883500|gb|EAN96409.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1045

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N L+ F   W+     Q + R+      + G K+ VF+Y L++  +I+E 
Sbjct: 779 GVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRVFIYRLLSAGSIEEK 832

Query: 180 VLQRLRTK 187
           + QR  +K
Sbjct: 833 IYQRQVSK 840


>gi|70998556|ref|XP_754000.1| RSC complex subunit (Sth1) [Aspergillus fumigatus Af293]
 gi|66851636|gb|EAL91962.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus Af293]
          Length = 1406

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 926  AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 979

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 980  EKILERAQFKLDMDGKVIQAGK 1001


>gi|327300239|ref|XP_003234812.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
 gi|326462164|gb|EGD87617.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
          Length = 777

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + TI
Sbjct: 613 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTI 663

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 664 EQTLLERAGSKRRLEKLVI 682


>gi|298241002|ref|ZP_06964809.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297554056|gb|EFH87920.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 949

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 106 EGKIPLLFAHP------ASC-GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           E +I  L AHP        C   G+NLQ   N ++ + L W+   H+Q   R  V R  Q
Sbjct: 527 ENRIAELGAHPQRVLVCTDCLSEGINLQEHFNAVIHYDLSWNPTRHEQREGR--VDRFGQ 584

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 V  YY  + ++ID++VL  L  K
Sbjct: 585 PAKDVRVVTYYDGSSDSIDQIVLDVLLRK 613


>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
          Length = 1465

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N+   K  +  A   +C  G++L     +++   +W         +ER  ++R  +
Sbjct: 1318 INEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW------NPAVERQAISRAYR 1371

Query: 159  AGFKRAVFVYYLIAQNT 175
             G KR V+ Y+L+A+ T
Sbjct: 1372 IGQKRIVYTYHLVAKGT 1388


>gi|238853530|ref|ZP_04643903.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833851|gb|EEQ26115.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 504

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLN+Q    +++    W    E+Q       ++R  + G  R V VY L
Sbjct: 380 VLLVQIDAGGFGLNIQAANRVILCEPQWKPSTENQ------AISRAYRMGQNRNVMVYRL 433

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + + ++DE +++ +  K  I
Sbjct: 434 LTKESVDETMMEIIHEKEDI 453


>gi|296128669|ref|YP_003635919.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020484|gb|ADG73720.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 737

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ   N LV   L W   E  Q I+RI      + G +  V  + +IA  TID
Sbjct: 612 AAGVGLNLQVASN-LVLAELSWTDAEQTQAIDRI-----HRIGQEEPVTAWRVIAAQTID 665

Query: 178 ELVLQRLRTKS 188
             + + + +KS
Sbjct: 666 ARIAELIDSKS 676


>gi|255580599|ref|XP_002531123.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223529287|gb|EEF31257.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 1718

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++E 
Sbjct: 982  GLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVEED 1035

Query: 180  VLQRLRTKSTIQDLLLNALKKE 201
            +L+R + K  +  L++  L  E
Sbjct: 1036 ILERAKKKMVLDHLVIQKLNAE 1057


>gi|116629551|ref|YP_814723.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095133|gb|ABJ60285.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 917

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLN+Q    +++    W    E+Q       ++R  + G  R V VY L
Sbjct: 793 VLLVQIDAGGFGLNIQAANRVILCEPQWKPSTENQ------AISRAYRMGQNRNVMVYRL 846

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + + ++DE +++ +  K  I
Sbjct: 847 LTKESVDETMMEIIHEKEDI 866


>gi|195342588|ref|XP_002037882.1| GM18506 [Drosophila sechellia]
 gi|194132732|gb|EDW54300.1| GM18506 [Drosophila sechellia]
          Length = 592

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQ 156
           T Q+ +  K+ LL     +C  G+ L     I+VF  L W+   L + +    RIG T+ 
Sbjct: 417 TFQKKSSCKVALLSLK--ACNSGITLT-AAEIIVFAELDWNPSTLAQAESRAHRIGQTK- 472

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   V   YL+A NT D+++   L+ K  +
Sbjct: 473 -------PVICRYLMAHNTADDIIWNMLKNKQEV 499


>gi|242793561|ref|XP_002482189.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718777|gb|EED18197.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 938

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ K  +L A    C  GLNL    N +V    WW      Q I+R+      + G KR 
Sbjct: 821 NDPKCTVLLASLNVCSVGLNL-VAANQVVLCDSWWAPAIEDQAIDRV-----YRLGQKRE 874

Query: 165 VFVYYLIAQNTIDELVL 181
             V+ L+ + ++++ VL
Sbjct: 875 TTVWRLVMEGSVEDRVL 891


>gi|325277313|ref|ZP_08142939.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
 gi|324097548|gb|EGB95768.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
          Length = 1105

 Score = 36.2 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +Q++ +G   +      + G GLNL    + ++ F  WW+     Q  +     R  + G
Sbjct: 989  VQQFQQGDSEVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPASENQATD-----RAYRIG 1042

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + VFV+ LI + T++E +    + K+ +   LL+ 
Sbjct: 1043 QDKPVFVFKLITRGTVEEKIQALQQEKAALAASLLDG 1079


>gi|229032866|ref|ZP_04188821.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
 gi|228728411|gb|EEL79432.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
          Length = 855

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++  
Sbjct: 823 MLERKQSLNNAVITT 837


>gi|229175913|ref|ZP_04303410.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
 gi|228607507|gb|EEK64832.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
          Length = 855

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I   N    ++  HF   +  L  + P+ +  DK    I+++  G   +      + G G
Sbjct: 713 IGMGNMLKNVLEEHFGQRVLFLNGSVPK-KERDK---MIEQFQNGTYDIFILSLKAGGTG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N ++ +  WW+       +E     R  + G KR V V+ LI   T++E + +
Sbjct: 769 LNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDE 822

Query: 183 RLRTKSTIQDLLLNA 197
            L  K ++ + ++  
Sbjct: 823 MLERKQSLNNAVITT 837


>gi|115438260|ref|XP_001218021.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
 gi|114188836|gb|EAU30536.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
          Length = 1418

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI  N+I+
Sbjct: 939  AGGLGLNLQSADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSNSIE 992

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 993  EKILERAQFKLDMDGKVIQAGK 1014


>gi|324500144|gb|ADY40077.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1875

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q M      +R  + G K+ V +Y L+ + +++E 
Sbjct: 888 GLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQKKQVNIYRLVTKASVEEE 941

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 942 IVERAKRKLVLDHLVIQRM 960


>gi|281207984|gb|EFA82162.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 498

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 16/95 (16%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA-----GFK 162
           KI +      + G GL L    ++ +F  L+W            GV  Q +A     G  
Sbjct: 172 KIKVAILSITAAGTGLTL-TAASVAIFAELYW----------TPGVLMQAEARVHRFGQN 220

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+V + YL+  NTIDE +   L +K  +   +L+ 
Sbjct: 221 RSVLIQYLVGINTIDESIWSMLESKKDVLGRILDG 255


>gi|328773098|gb|EGF83135.1| hypothetical protein BATDEDRAFT_7470 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 104

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I ++       G GLNL     +++   LWW+     Q I+R+      + G +  V V 
Sbjct: 4   ISVMLVSLKCGGVGLNLSIACRVIIC-DLWWNPAVEDQAIDRV-----HRIGQRVDVRVS 57

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
           YL+A++TI+E +L    +K  I
Sbjct: 58  YLVAKDTIEERILIMQESKRQI 79


>gi|326797956|ref|YP_004315775.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326548720|gb|ADZ77105.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 1121

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +        G GLNL    + +     WW+     Q I+RI      + G K+ V
Sbjct: 1017 DGRVKVFLMSLKVGGVGLNLT-EADYVYLIDPWWNPAVEDQAIDRI-----YRMGQKKNV 1070

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                LI + TI+E VLQ  ++KS +   L++++
Sbjct: 1071 IAVRLICKETIEEKVLQLQQSKSELFTKLIDSI 1103


>gi|224826766|ref|ZP_03699866.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
 gi|224600986|gb|EEG07169.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
          Length = 1370

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++    WW+       +E     R  + G +R V VY L+A++TI+
Sbjct: 1278 AGGTGLNLT-AADYVIHLDPWWN-----PAVEDQASDRAHRMGQQRPVTVYRLVAEHTIE 1331

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E ++     K  + D LL  
Sbjct: 1332 EQIVALHAAKRDLADSLLEG 1351


>gi|324505729|gb|ADY42457.1| DNA repair and recombination protein RAD54B [Ascaris suum]
          Length = 746

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + E+N   +P  +      + G GLNL  G + LV F   W+     Q + RI      +
Sbjct: 601 VDEFNTSSLPNHVFLLSTKAGGVGLNL-IGASRLVLFDSDWNPAFDVQAMARIW-----R 654

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G K    +Y L+   TIDE +LQR   KS
Sbjct: 655 DGQKMPCHIYRLVTAGTIDEKILQRQVMKS 684


>gi|317121963|ref|YP_004101966.1| helicase [Thermaerobacter marianensis DSM 12885]
 gi|315591943|gb|ADU51239.1| helicase domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 524

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNLQ+  N+ V + L W+    +Q I RI    Q  A    +V V+ L A+ TI+E 
Sbjct: 392 GQGLNLQFCRNV-VNYDLPWNPMRVEQRIGRIHRLGQEAA----SVRVFNLYARRTIEEY 446

Query: 180 VLQRLRTKSTI-------QDLLLNALKKE 201
           +L+ L  K  +        DL+L +L +E
Sbjct: 447 ILRLLDEKINLFRQVIGEIDLILRSLDRE 475


>gi|159126264|gb|EDP51380.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus A1163]
          Length = 1406

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 926  AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 979

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 980  EKILERAQFKLDMDGKVIQAGK 1001


>gi|164655795|ref|XP_001729026.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
 gi|159102915|gb|EDP41812.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
          Length = 1053

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    +++V F   W+ +   Q ++R       + G K+ VFVY  +  ++I+
Sbjct: 562 AGGLGINLT-SADVVVLFDSDWNPQADLQAMDRA-----HRIGQKKQVFVYRFVTDHSIE 615

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L+R   K  +  L++
Sbjct: 616 ERILERAAQKLRLDQLVI 633


>gi|121712712|ref|XP_001273967.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
 gi|119402120|gb|EAW12541.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
          Length = 1379

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 929  AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 982

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 983  EKILERAQFKLDMDGKVIQAGK 1004


>gi|261334803|emb|CBH17797.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 762

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + ++ A   + G GLNL    ++LV    WW+       IE   V R  + G ++ V V 
Sbjct: 625 VRVILASKTATGVGLNLTAANHVLV-VDPWWN-----PAIEEQAVHRCYRIGQRKHVHVK 678

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +I ++TI++   +  R K    D +L A  K
Sbjct: 679 RIIIEDTIEQYCYEICRRKKEFGDAILRAATK 710


>gi|167522321|ref|XP_001745498.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775847|gb|EDQ89469.1| predicted protein [Monosiga brevicollis MX1]
          Length = 817

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL      +++ S W   ++ Q         R  + G +  V +Y LI  NT+D
Sbjct: 663 AGGLGLNLVSADTCIIYDSDWNPQQDLQ------AQDRCHRIGQRNPVIIYRLITANTVD 716

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + +L+R  +K  ++ +++
Sbjct: 717 QRILERAESKRRLEKMVM 734


>gi|71755921|ref|XP_828875.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834261|gb|EAN79763.1| DNA repair protein, putative [Trypanosoma brucei]
          Length = 762

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + ++ A   + G GLNL    ++LV    WW+       IE   V R  + G ++ V V 
Sbjct: 625 VRVILASKTATGVGLNLTAANHVLV-VDPWWN-----PAIEEQAVHRCYRIGQRKHVHVK 678

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +I ++TI++   +  R K    D +L A  K
Sbjct: 679 RIIIEDTIEQYCYEICRRKKEFGDAILRAATK 710


>gi|156741718|ref|YP_001431847.1| hypothetical protein Rcas_1737 [Roseiflexus castenholzii DSM 13941]
 gi|156233046|gb|ABU57829.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Roseiflexus castenholzii DSM 13941]
          Length = 1024

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
           G  Y    KH+ E+  EKI A E    + N AP+ V +H +  + R+   +   R L K
Sbjct: 734 GIEYNITAKHYSEIVAEKIHASEFAFPQTNRAPVTVTWHDSCHIGRVSGVYEPPRDLIK 792


>gi|38014266|gb|AAH01474.2| RAD54L2 protein [Homo sapiens]
          Length = 1159

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 87  AFPQGRTLDK--DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           AF + R +++  DP  +  W       L +  A C  G+NL     ++VF + W    + 
Sbjct: 483 AFERERLINQFNDPSNLTTW-----LFLLSTRAGC-LGVNLIGANRVVVFDASWNPCHDA 536

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q       V R  + G K+  F+Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 537 Q------AVCRVYRYGQKKPCFIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 584


>gi|296809533|ref|XP_002845105.1| helicase [Arthroderma otae CBS 113480]
 gi|238844588|gb|EEQ34250.1| helicase [Arthroderma otae CBS 113480]
          Length = 869

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL+  Q    RIG T+         V VY L  + T+
Sbjct: 705 GQGINLTAADTVILFDSDWNPQQDLQ-AQDRAHRIGQTK--------PVIVYRLATRGTV 755

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+R  +K  ++ L++
Sbjct: 756 EQTLLERAGSKRRLEKLVI 774


>gi|146419456|ref|XP_001485690.1| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            E    F  ++K  KC++L N                 + K+LE   EK     IIV   F
Sbjct: 914  EETNGFTPSTKIEKCIELVNQI---------------RTKSLE---EK-----IIVFSQF 950

Query: 78   NS--DLARL---QKAFPQGR-----TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             +  DL +L   +K  P  R     +LD    TI+ + +G   +L     +   GL L  
Sbjct: 951  TTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGLTQVLLISLRAGNVGLTLTC 1010

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++    W    E Q M       R  + G +R VFV+ ++  +TI+  +++  + K
Sbjct: 1011 ANHVILMDPFWNPFVEEQAM------DRAHRIGQQREVFVHRILLNDTIEGRIMELQKYK 1064

Query: 188  STIQDLLLNAL 198
               ++++ NAL
Sbjct: 1065 ---KEMVQNAL 1072


>gi|119498495|ref|XP_001266005.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
 gi|119414169|gb|EAW24108.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
          Length = 1405

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 925  AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 978

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 979  EKILERAQFKLDMDGKVIQAGK 1000


>gi|33146888|dbj|BAC79886.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
          Length = 637

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L A   +C  G++L  G + LV     W+  + +Q I      R  + G +R V+
Sbjct: 515 GKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI-----ARAFRRGQERTVY 568

Query: 167 VYYLIAQNTIDE 178
           VY L+A  T +E
Sbjct: 569 VYLLVASGTWEE 580


>gi|26340760|dbj|BAC34042.1| unnamed protein product [Mus musculus]
          Length = 904

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 234 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 287

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 288 SLMWAMLNRKAQVTGSTLNGRKEK 311


>gi|26988870|ref|NP_744295.1| Snf2/Rad54 family helicase [Pseudomonas putida KT2440]
 gi|24983677|gb|AAN67759.1|AE016407_3 helicase, SNF2/RAD54 family [Pseudomonas putida KT2440]
          Length = 666

 Score = 36.2 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +++ +   G T D+    +Q++ +G+  +      + G GLNL    + ++ F  WW+  
Sbjct: 533 KIRYSLLTGDTRDRR-TPVQQFQQGESEVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPA 590

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              Q  +     R  + G  + VFV+ LI + T++E +    + K+ +   LL+ 
Sbjct: 591 SENQATD-----RAYRIGQDKPVFVFKLITRGTVEEKIQLLQQEKAALAASLLDG 640


>gi|322825950|gb|EFZ30762.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 914

 Score = 36.2 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + YL+A+ T D
Sbjct: 555 SCGVGHNLTCA-TMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIKYLLAEGTSD 608

Query: 178 ELVLQRLRTKSTIQDLLL 195
            ++   L+TK  +   +L
Sbjct: 609 SVIWPMLQTKLNVTHAVL 626


>gi|241950577|ref|XP_002418011.1| DNA repair protein, putative [Candida dubliniensis CD36]
 gi|223641350|emb|CAX43310.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 1088

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            Q  + GKI +L     +CG GLNL       +    WW      Q I+RI      + G 
Sbjct: 981  QPLDNGKIAILLLSLKACGVGLNLTTASRAYM-MDPWWSPSIEDQAIDRI-----HRIGQ 1034

Query: 162  KRAVFVYYLIAQNTIDELVLQ 182
               V V   I +N+I+  +L+
Sbjct: 1035 NETVKVVRFIMENSIETKMLK 1055


>gi|71648872|ref|XP_813216.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878080|gb|EAN91365.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 744

 Score = 36.2 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + YL+A+ T D
Sbjct: 385 SCGVGHNLTCA-TMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIKYLLAEGTSD 438

Query: 178 ELVLQRLRTKSTIQDLLL 195
            ++   L+TK  +   +L
Sbjct: 439 SVIWPMLQTKLNVTHAVL 456


>gi|71653795|ref|XP_815529.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70880590|gb|EAN93678.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 938

 Score = 36.2 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + YL+A+ T D
Sbjct: 579 SCGVGHNLTCA-TMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIKYLLAEGTSD 632

Query: 178 ELVLQRLRTKSTIQDLLL 195
            ++   L+TK  +   +L
Sbjct: 633 SVIWPMLQTKLNVTHAVL 650


>gi|317138645|ref|XP_001817051.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            oryzae RIB40]
          Length = 1422

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 940  AGGLGLNLQSADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 993

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 994  EKILERAQFKLDMDGKVIQAGK 1015


>gi|114658983|ref|XP_001170738.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 7
           [Pan troglodytes]
          Length = 1777

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 820 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 873

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 874 IIERAKKKMVLDHLVIQRM 892


>gi|323449633|gb|EGB05519.1| hypothetical protein AURANDRAFT_30762 [Aureococcus anophagefferens]
          Length = 603

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +E KI L      + G G+NL     ++++ + W    + Q M       R  + G +  
Sbjct: 519 SESKIFLYLISTRAGGQGINLATADTVVLYDTCWNPQVDLQAM------DRAHRIGQRGQ 572

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V VY LIA++T++E V  R       Q LLL+AL
Sbjct: 573 VTVYRLIARDTVEEKVHARAH-----QKLLLDAL 601


>gi|118095916|ref|XP_413879.2| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Gallus gallus]
          Length = 1837

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 874 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 927

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 928 IIERAKKKMVLDHLVIQRM 946


>gi|309358145|emb|CAP34504.2| CBR-ISW-1 protein [Caenorhabditis briggsae AF16]
          Length = 1019

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G K+ V V+ LI +NT+D
Sbjct: 517 AGGLGINLATADVVIIYDSDWNPQSDLQAM------DRAHRIGQKKQVKVFRLITENTVD 570

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + ++++   K  + ++++
Sbjct: 571 DRIIEKAEAKLRLDNIVI 588


>gi|251795916|ref|YP_003010647.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247543542|gb|ACT00561.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 1088

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  +  A   + G GLNL     + + + LWW+    QQ        R  + G  +
Sbjct: 975  FNDGEKDIFLASLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAHRIGQTK 1028

Query: 164  AVFVYYLIAQNTI-DELVLQRLRTKSTIQDLL 194
             V V  L A  T+ D++   + R K+ I D++
Sbjct: 1029 VVQVIRLAAHGTVEDKMYALQERKKNMIDDII 1060


>gi|73951135|ref|XP_859122.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 6 [Canis familiaris]
          Length = 1836

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 880 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 933

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 934 IIERAKKKMVLDHLVIQRM 952


>gi|326926799|ref|XP_003209584.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Meleagris gallopavo]
          Length = 1837

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 874 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 927

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 928 IIERAKKKMVLDHLVIQRM 946


>gi|194038394|ref|XP_001926393.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2 [Sus scrofa]
          Length = 1828

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|126276965|ref|XP_001365054.1| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Monodelphis domestica]
          Length = 1836

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 878 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 931

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 932 IIERAKKKMVLDHLVIQRM 950


>gi|73951151|ref|XP_859429.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 14 [Canis familiaris]
          Length = 1809

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 853 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 906

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 907 IIERAKKKMVLDHLVIQRM 925


>gi|83764905|dbj|BAE55049.1| unnamed protein product [Aspergillus oryzae]
          Length = 1417

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 935  AGGLGLNLQSADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 988

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 989  EKILERAQFKLDMDGKVIQAGK 1010


>gi|70943600|ref|XP_741826.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520453|emb|CAH80960.1| hypothetical protein PC000341.04.0 [Plasmodium chabaudi chabaudi]
          Length = 154

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++ +L     + G GLNLQ    I +    WW+     Q I+     R  + G  + 
Sbjct: 49  NDKQLRVLLISLKAGGEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQTKT 102

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V+    I +NT++E ++Q    K  + D
Sbjct: 103 VYAIRFIIENTVEEKIIQLQNKKQLVFD 130


>gi|15615476|ref|NP_243779.1| SNF2 helicase [Bacillus halodurans C-125]
 gi|10175535|dbj|BAB06632.1| SNF2 helicase [Bacillus halodurans C-125]
          Length = 995

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++P+      + G GLNL    N ++ +  WW+       +E     R  + G    
Sbjct: 890 NDRELPIFILSLKAGGVGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIGQTAD 943

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L+ + T++E + Q L +K  + + +L A
Sbjct: 944 VTVHKLMTEGTLEERIHQMLESKQALAEQILTA 976


>gi|297297256|ref|XP_002808499.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Macaca mulatta]
          Length = 1806

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++
Sbjct: 847 AGGLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVE 900

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E +++R + K  +  L++  +
Sbjct: 901 EEIIERAKKKMVLDHLVIQRM 921


>gi|240169371|ref|ZP_04748030.1| SNF2 family helicase [Mycobacterium kansasii ATCC 12478]
          Length = 2150

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +AF    +  +   TI  +  G+ P++ +  A    G NLQ+  N ++ + L W+    +
Sbjct: 539 RAFHGSMSASERAATIAAFRSGEAPVMISTDAG-AEGQNLQFC-NCVLNYDLPWNPMRIE 596

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Q I R+     R    +  VFV  L A  TIDE V + L  K  + +LL 
Sbjct: 597 QRIGRV----DRLTQPRDEVFVANLYACRTIDESVYRLLAEKLRMFELLF 642


>gi|114658989|ref|XP_001170614.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Pan troglodytes]
          Length = 1531

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|73951147|ref|XP_859355.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 12 [Canis familiaris]
          Length = 1851

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|62319947|dbj|BAD94038.1| pseudogene [Arabidopsis thaliana]
          Length = 1221

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 1017 AGGLGINLATADTVVIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVE 1070

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1071 EEILERAKRKMVLDHLVIQKLNAE 1094


>gi|320582398|gb|EFW96615.1| DNA helicase [Pichia angusta DL-1]
          Length = 1219

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +       R  + G K  V +  LI +++++
Sbjct: 844 AGGLGLNLQTADTVIIFDTDW---NPHQDL---QAQDRAHRIGQKNEVRILRLITEDSVE 897

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 898 EVILERAHQKLDIDGKVIQAGK 919


>gi|114658975|ref|XP_001170775.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 9
           [Pan troglodytes]
          Length = 1834

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 877 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 930

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 931 IIERAKKKMVLDHLVIQRM 949


>gi|73951141|ref|XP_859244.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 9 [Canis familiaris]
          Length = 1807

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|268573820|ref|XP_002641887.1| C. briggsae CBR-ISW-1 protein [Caenorhabditis briggsae]
          Length = 1012

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     ++++ S W    + Q M       R  + G K+ V V+ LI +NT+D
Sbjct: 517 AGGLGINLATADVVIIYDSDWNPQSDLQAM------DRAHRIGQKKQVKVFRLITENTVD 570

Query: 178 ELVLQRLRTKSTIQDLLL 195
           + ++++   K  + ++++
Sbjct: 571 DRIIEKAEAKLRLDNIVI 588


>gi|322701620|gb|EFY93369.1| SNF2 family helicase/ATPase [Metarhizium acridum CQMa 102]
          Length = 1677

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +RL    P  +  D+    I+++N  +  L      + G GLN+Q    +++  S W  
Sbjct: 1208 FSRLDGGTPIAKRQDE----IKKFNANQTELYLISTRAGGVGLNIQGANKVVILDSKWNP 1263

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            + E Q       + R  + G  + V VYY +   T ++
Sbjct: 1264 VHEQQ------AIGRSYRIGQSKPVSVYYFVTAGTFEQ 1295


>gi|77164070|ref|YP_342595.1| helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254435267|ref|ZP_05048774.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882384|gb|ABA57065.1| Helicase-like protein [Nitrosococcus oceani ATCC 19707]
 gi|207088378|gb|EDZ65650.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 910

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E ++ L+ A  A+C  GLNLQ  G  L+   L W+    +Q + RI    +R    +  V
Sbjct: 757 EREVRLMVATDAAC-EGLNLQMLGT-LINVDLPWNPTRLEQRLGRI----KRLGQLRENV 810

Query: 166 FVYYLIAQNTIDELVLQRL----RTKSTIQDLLLNALKKETI 203
            +  L+ Q T+DE + +RL    R +  +   L + LK E I
Sbjct: 811 DMLNLVYQGTVDETIYERLSERMRDRYDLFGALPDTLKDEWI 852


>gi|290998710|ref|XP_002681923.1| SNF2 domain-containing protein [Naegleria gruberi]
 gi|284095549|gb|EFC49179.1| SNF2 domain-containing protein [Naegleria gruberi]
          Length = 1231

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            G G+ L     ++ + S W    + Q M  + RIG T+         V +Y LI +N+++
Sbjct: 1114 GLGITLTAADTVIFYDSDWNPTLDAQAMDRVHRIGQTK--------PVTIYRLITKNSVE 1165

Query: 178  ELVLQRLRTKSTIQDLL 194
            E +L   + KSTIQ+ +
Sbjct: 1166 ERILAIAKQKSTIQETV 1182


>gi|224104242|ref|XP_002313369.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222849777|gb|EEE87324.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1748

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 1002 AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVE 1055

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1056 EDILERAKKKMVLDHLVIQKLNAE 1079


>gi|114658987|ref|XP_001170658.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 3
           [Pan troglodytes]
          Length = 1603

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|327283794|ref|XP_003226625.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Anolis carolinensis]
          Length = 1863

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 904 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 957

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 958 IIERAKKKMVLDHLVIQRM 976


>gi|149691012|ref|XP_001488063.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Equus caballus]
          Length = 1828

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|73951139|ref|XP_859203.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 8 [Canis familiaris]
          Length = 1839

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|156845664|ref|XP_001645722.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116389|gb|EDO17864.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI +N+++
Sbjct: 1176 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITENSVE 1229

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L++   K  I   ++ A K
Sbjct: 1230 EAILEKAHKKLDIDGKVIQAGK 1251


>gi|297835980|ref|XP_002885872.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331712|gb|EFH62131.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1721

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 1014 AGGLGINLATADTVVIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVE 1067

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1068 EEILERAKRKMVLDHLVIQKLNAE 1091


>gi|221055808|ref|XP_002259042.1| snf2 family n-terminal domain [Plasmodium knowlesi strain H]
 gi|193809113|emb|CAQ39815.1| snf2 family n-terminal domain, putative [Plasmodium knowlesi strain
           H]
          Length = 1382

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 91  GRTL-DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G T+ D+    I ++NE   K  +      + G G+NL     +++F S      ++   
Sbjct: 654 GSTVGDERQIRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDS------DYNPQ 707

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++   + R  + G K+ V VY  + QNT++E +++R   K  +  L++
Sbjct: 708 MDIQAMDRAHRIGQKKKVIVYRFVTQNTVEEKIVERAAKKLKLDSLII 755


>gi|148675185|gb|EDL07132.1| mCG19747 [Mus musculus]
          Length = 1723

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 878 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 931

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 932 IIERAKKKMVLDHLVIQRM 950


>gi|114658977|ref|XP_001170676.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 4
           [Pan troglodytes]
 gi|114658979|ref|XP_001170719.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 6
           [Pan troglodytes]
 gi|114658981|ref|XP_001170756.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 8
           [Pan troglodytes]
          Length = 1828

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|73951149|ref|XP_859392.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 13 [Canis familiaris]
          Length = 1814

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|118421089|ref|NP_001262.3| chromodomain-helicase-DNA-binding protein 2 isoform 1 [Homo
           sapiens]
 gi|119370320|sp|O14647|CHD2_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 2;
           Short=CHD-2; AltName: Full=ATP-dependent helicase CHD2
 gi|225000176|gb|AAI72425.1| Chromodomain helicase DNA binding protein 2 [synthetic construct]
          Length = 1828

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|189458810|ref|NP_001074814.2| chromodomain helicase DNA binding protein 2 [Mus musculus]
          Length = 1827

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|124430705|ref|NP_081954.1| zinc finger Ran-binding domain-containing protein 3 [Mus musculus]
 gi|81885066|sp|Q6NZP1|ZRAB3_MOUSE RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|42406402|gb|AAH66035.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
          Length = 1069

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|119622565|gb|EAX02160.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622567|gb|EAX02162.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622569|gb|EAX02164.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|239740390|gb|ACS13730.1| chromodomain-helicase-dna-binding protein 2 [Homo sapiens]
          Length = 1739

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|73951145|ref|XP_859323.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 11 [Canis familiaris]
          Length = 1820

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|73951153|ref|XP_859466.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 15 [Canis familiaris]
          Length = 1812

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|73951125|ref|XP_849509.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 2 [Canis familiaris]
 gi|73951131|ref|XP_536179.2| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 1 [Canis familiaris]
          Length = 1827

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|119622570|gb|EAX02165.1| chromodomain helicase DNA binding protein 2, isoform CRA_d [Homo
           sapiens]
          Length = 1857

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 835 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 888

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 889 IIERAKKKMVLDHLVIQRM 907


>gi|4733988|gb|AAD28668.1| putative chromodomain-helicase-DNA-binding protein [Arabidopsis
            thaliana]
          Length = 1738

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 1031 AGGLGINLATADTVVIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVE 1084

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1085 EEILERAKRKMVLDHLVIQKLNAE 1108


>gi|73951133|ref|XP_859090.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 5 [Canis familiaris]
          Length = 1822

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 920 IIERAKKKMVLDHLVIQRM 938


>gi|114658985|ref|XP_510607.2| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 10
           [Pan troglodytes]
          Length = 1739

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|169763362|ref|XP_001727581.1| SNF2 family helicase/ATPase PasG [Aspergillus oryzae RIB40]
 gi|83770609|dbj|BAE60742.1| unnamed protein product [Aspergillus oryzae]
          Length = 868

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL + Q    RIG T        R V VY L  + T+
Sbjct: 709 GQGINLMAADTVILFDSDWNPQQDL-QAQDRAHRIGQT--------RPVIVYRLATKGTV 759

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L++  +K  ++ L++
Sbjct: 760 EQTLLEKADSKRRLERLVI 778


>gi|260942857|ref|XP_002615727.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
 gi|238851017|gb|EEQ40481.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
          Length = 343

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + KIP+      S G G+NL  G + ++F+   W+    +Q  +R       + G  R V
Sbjct: 144 DPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDRC-----HRIGQMRDV 197

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y  +++ TI+  +L++   K  + ++++
Sbjct: 198 HIYRFVSEYTIESNILKKANQKRQLDNVVI 227


>gi|154271652|ref|XP_001536679.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
 gi|150409349|gb|EDN04799.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
          Length = 889

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + F    + G G+NL     +++F S W    DL + Q    RIG T        + V V
Sbjct: 713 IFFLSTRAGGQGINLTAADTVILFDSDWNPQQDL-QAQDRAHRIGQT--------KPVIV 763

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y L  + T+++ +L++  +K  ++ L++
Sbjct: 764 YRLATRGTVEQTLLEKADSKRRLEKLVI 791


>gi|157819999|ref|NP_001100993.1| chromodomain-helicase-DNA-binding protein 2 [Rattus norvegicus]
 gi|149057183|gb|EDM08506.1| chromodomain helicase DNA binding protein 2 (predicted) [Rattus
           norvegicus]
          Length = 1834

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 878 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 931

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 932 IIERAKKKMVLDHLVIQRM 950


>gi|145359958|ref|NP_178970.3| CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|330251136|gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana]
          Length = 1724

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 1017 AGGLGINLATADTVVIFDSDWNPQNDLQAM------SRAHRIGQQEVVNIYRFVTSKSVE 1070

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1071 EEILERAKRKMVLDHLVIQKLNAE 1094


>gi|114658991|ref|XP_001170635.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 2
           [Pan troglodytes]
 gi|114658993|ref|XP_001170689.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 5
           [Pan troglodytes]
          Length = 1730

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 773 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 826

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 827 IIERAKKKMVLDHLVIQRM 845


>gi|2645431|gb|AAB87382.1| CHD2 [Homo sapiens]
          Length = 1739

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|307210254|gb|EFN86904.1| Chromodomain-helicase-DNA-binding protein 1 [Harpegnathos saltator]
          Length = 1825

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K  V +Y L+ +N+++E 
Sbjct: 837 GLGINLATADTVIIFDSDWNPQNDLQAQ------ARAHRIGQKNQVNIYRLVTKNSVEEE 890

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 891 IVERAKQKMVLDHLVIQRM 909


>gi|296204004|ref|XP_002806940.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Callithrix jacchus]
          Length = 1738

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|158341292|ref|YP_001522344.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
 gi|158311533|gb|ABW33144.1| helicase, SNF2 family [Acaryochloris marina MBIC11017]
          Length = 1406

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A+ TI+E 
Sbjct: 1316 GTGLNLT-AADYVIHMDPWWN-----PAVEDQASDRAHRIGQQRPVTIYRLVAKGTIEEK 1369

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +++    K  + D LL  
Sbjct: 1370 IVELHNQKRDLADSLLEG 1387


>gi|148707811|gb|EDL39758.1| mCG13937, isoform CRA_b [Mus musculus]
          Length = 1097

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 427 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 480

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 481 SLMWAMLNRKAQVTGSTLNGRKEK 504


>gi|328786333|ref|XP_001120496.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Apis
           mellifera]
          Length = 1667

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K  V +Y L+ +N+++E 
Sbjct: 738 GLGINLATADTVIIFDSDWNPQNDLQAQ------ARAHRIGQKNQVNIYRLVTKNSVEEE 791

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 792 IVERAKQKMVLDHLVIQRM 810


>gi|73951143|ref|XP_859285.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 10 [Canis familiaris]
          Length = 1806

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 856 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 909

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 910 IIERAKKKMVLDHLVIQRM 928


>gi|290986627|ref|XP_002676025.1| predicted protein [Naegleria gruberi]
 gi|284089625|gb|EFC43281.1| predicted protein [Naegleria gruberi]
          Length = 467

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAV 165
           + +L  + A CG  LN     + +VF  L W+   L + +    RIG    ++  F   V
Sbjct: 374 VAILSMNVAGCG--LNF-VPCSTVVFAELCWNPALLNQCEDRCHRIG----QKGAF---V 423

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + YL+A+ T+D+ +   L  K+ I DL LN  K+E
Sbjct: 424 DITYLLAKKTLDDFMWDLLTKKADITDLALNGQKEE 459


>gi|254585925|ref|XP_002498530.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
 gi|238941424|emb|CAR29597.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
          Length = 901

 Score = 35.8 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 110 PLLFA---HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           P +FA      S G GLNL  G   L+ F   W+     Q + RI      + G K+  +
Sbjct: 669 PSIFAFLLSAKSGGVGLNL-IGACRLILFDNDWNPSVDLQAMSRI-----HRDGQKKPCY 722

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +Y L+    IDE +LQR   K+ +    L+  K
Sbjct: 723 IYRLVTTGCIDEKILQRQLMKNCLSQKFLSDTK 755


>gi|149245518|ref|XP_001527236.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449630|gb|EDK43886.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1400

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI+ ++++
Sbjct: 989  AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISNDSVE 1042

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E++L+R   K  I   ++ A K
Sbjct: 1043 EMILERAHQKLEIDGKVIQAGK 1064


>gi|109730809|gb|AAI17923.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
 gi|109731403|gb|AAI17922.1| Zranb3 protein [Mus musculus]
          Length = 1069

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|73951129|ref|XP_859020.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 4 [Canis familiaris]
          Length = 1714

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 758 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 811

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 812 IIERAKKKMVLDHLVIQRM 830


>gi|322695761|gb|EFY87564.1| DNA repair and recombination protein RAD5B [Metarhizium acridum CQMa
            102]
          Length = 1030

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+ +  ++ A  A C  GLNL    + ++    WW      Q I+R+      + G  R 
Sbjct: 923  NDAETRVMLASLAVCSVGLNL-VSADTVILSDSWWAPAIEDQAIDRV-----HRLGQTRK 976

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              V+ LI + +++E VL   + K   +DL+  A +++
Sbjct: 977  TTVWRLIVEGSVEERVLDIQKEK---RDLVTKAFQEK 1010


>gi|284159900|gb|ADB80440.1| NHX1 [Malus zumi]
          Length = 544

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L+ Q+++D+LV+Q +R  ++I+DLL     + T+H
Sbjct: 472 LLGQDSVDDLVIQDIRRPASIRDLLTTPFNRHTVH 506


>gi|148707810|gb|EDL39757.1| mCG13937, isoform CRA_a [Mus musculus]
          Length = 1073

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 403 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 456

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 457 SLMWAMLNRKAQVTGSTLNGRKEK 480


>gi|54309827|ref|YP_130847.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
 gi|46914265|emb|CAG21045.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
          Length = 1298

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R++ CD +    E    +SK  + LQL   A    E +H   V  + +  L++  ++   
Sbjct: 1112 RQVCCDSRLVFSEMDQPSSKLNEALQLVKEA---REGQHRILVFSQFVTLLKMFADQLEG 1168

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
              I  +Y      +R +K              I  +  GK  +      + G GLNL   
Sbjct: 1169 DGINYSYLDGKSSSRQRKQ------------AIDAFTSGKKEVFLISLKAGGTGLNLTEA 1216

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + +    WW+       +E     R  + G  + V VY L+A NTI+E ++   ++K 
Sbjct: 1217 DTV-IHLDPWWN-----PAVEDQASDRAYRMGQTKPVTVYRLVATNTIEEKIVLLHQSKR 1270

Query: 189  TIQDLLLNA 197
             + D +L+ 
Sbjct: 1271 DLADKVLSG 1279


>gi|301607520|ref|XP_002933353.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Xenopus (Silurana) tropicalis]
          Length = 1809

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 873 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTRGTVEED 926

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 927 IIERAKKKMVLDHLVIQRM 945


>gi|195576640|ref|XP_002078183.1| GD23310 [Drosophila simulans]
 gi|194190192|gb|EDX03768.1| GD23310 [Drosophila simulans]
          Length = 755

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQ 156
           T Q+ +  K+ LL     +C  G+ L     I+VF  L W+   L + +    RIG T+ 
Sbjct: 580 TFQKKSSCKVALLSLK--ACNSGITLT-AAEIIVFAELDWNPSTLAQAESRAHRIGQTK- 635

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   V   YL+A NT D+++   L+ K  +
Sbjct: 636 -------PVICRYLMAHNTADDIIWNMLKNKQEV 662


>gi|284518926|gb|ADB92598.1| vacuolar Na+/H+ antiporter [Malus x domestica]
          Length = 544

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L+ Q+++D+LV+Q +R  ++I+DLL     + T+H
Sbjct: 472 LLGQDSVDDLVIQDIRRPASIRDLLTTPFNRHTVH 506


>gi|224062717|ref|XP_002197759.1| PREDICTED: chromodomain helicase DNA binding protein 2 [Taeniopygia
           guttata]
          Length = 1826

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 920 IIERAKKKMVLDHLVIQRM 938


>gi|52545910|emb|CAE45796.2| hypothetical protein [Homo sapiens]
          Length = 192

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 8/48 (16%)

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+G T+Q        V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 6   RLGQTKQ--------VTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|238503544|ref|XP_002383005.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
 gi|220690476|gb|EED46825.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
          Length = 1095

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     HQ +       R  + G K  V +  LI+ N+++
Sbjct: 675 AGGLGLNLQSADTVIIFDSDW---NPHQDL---QAQDRAHRIGQKNEVRILRLISSNSVE 728

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R + K  +   ++ A K
Sbjct: 729 EKILERAQFKLDMDGKVIQAGK 750


>gi|320588259|gb|EFX00734.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1741

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +N G+  +      + G GLN+     +++F   W  + E Q       + R  + G
Sbjct: 1290 VKSFNAGRDEIYLISTTAGGVGLNIHGANRVVIFDFKWNPMHEQQ------AIGRAYRIG 1343

Query: 161  FKRAVFVYYLIAQNTIDELV 180
              + VFVY+LI   T + ++
Sbjct: 1344 QTKPVFVYWLITGGTFETVL 1363


>gi|255720466|ref|XP_002556513.1| KLTH0H15158p [Lachancea thermotolerans]
 gi|238942479|emb|CAR30651.1| KLTH0H15158p [Lachancea thermotolerans]
          Length = 1021

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           E N  K   L    A  G G+NL     ++++ S W    + Q M       R  + G K
Sbjct: 499 EPNSDKFIFLLTTRAG-GLGINLVTADTVVLYDSDWNPQADLQAM------DRAHRIGQK 551

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V+VY  + +N I+E V++R   K  +  L++
Sbjct: 552 KQVYVYRFVTENAIEEKVIERAAQKLRLDQLVI 584


>gi|158337347|ref|YP_001518522.1| hypothetical protein AM1_4225 [Acaryochloris marina MBIC11017]
 gi|158307588|gb|ABW29205.1| hypothetical protein AM1_4225 [Acaryochloris marina MBIC11017]
          Length = 343

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 10/71 (14%)

Query: 138 WWDLEEHQQ----MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           WW  E+ QQ    +I+R+G+TR R   F R +++Y L+ +   D+  L     +  ++DL
Sbjct: 12  WWSPEQQQQTVEKLIQRVGLTRVRAESFVR-LWIYALVQEQLADQPCL-----RPPLKDL 65

Query: 194 LLNALKKETIH 204
           +L   K    H
Sbjct: 66  VLPTQKVICTH 76


>gi|73952004|ref|XP_856319.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 6 [Canis familiaris]
          Length = 1573

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 867 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 920

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 921 ILERAKKKMVLDHLVIQRM 939


>gi|241250526|ref|XP_002403274.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
 gi|215496466|gb|EEC06106.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
          Length = 1514

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K  V +Y L+ +N+++E 
Sbjct: 860 GLGINLATADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKNQVNIYRLVTKNSVEED 913

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 914 IIERAKRKMVLDHLVIQRM 932


>gi|73952006|ref|XP_546008.2| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 1 [Canis familiaris]
          Length = 1799

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 867 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 920

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 921 ILERAKKKMVLDHLVIQRM 939


>gi|255077555|ref|XP_002502414.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517679|gb|ACO63672.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1050

 Score = 35.8 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLN+     +++F   W   ++ Q         R  + G +R V VY L+A  TI+E+
Sbjct: 695 GVGLNITSANRVVIFDPNWNPAKDAQAQ------DRAYRIGQRRDVDVYRLLAAGTIEEM 748

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V QR   K    ++ ++A K+
Sbjct: 749 VYQRQVYKQQQSNVAVDASKE 769


>gi|134080265|emb|CAK97168.1| unnamed protein product [Aspergillus niger]
          Length = 2138

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 122  GLNLQYGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            GLNLQ   N ++F S       +D E    MI+ IG  R R+ G  R V VY+L+A+++I
Sbjct: 2040 GLNLQ-SANHVIFLSPMNAETQYDYE--SAMIQAIG--RSRRYGQTRRVHVYHLLAKHSI 2094

Query: 177  DELVLQRLRTKSTIQ 191
            D  + Q  R +  I+
Sbjct: 2095 DVNIFQERRHQVLIE 2109


>gi|300796537|ref|NP_001178977.1| chromodomain-helicase-DNA-binding protein 1 [Bos taurus]
          Length = 1810

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 880 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 933

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 934 ILERAKKKMVLDHLVIQRM 952


>gi|297477562|ref|XP_002689460.1| PREDICTED: chromodomain helicase DNA binding protein 1-like [Bos
           taurus]
 gi|296485027|gb|DAA27142.1| chromodomain helicase DNA binding protein 1-like [Bos taurus]
          Length = 1810

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 880 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 933

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 934 ILERAKKKMVLDHLVIQRM 952


>gi|327263233|ref|XP_003216425.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
           carolinensis]
          Length = 1803

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|222630170|gb|EEE62302.1| hypothetical protein OsJ_17090 [Oryza sativa Japonica Group]
          Length = 1087

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNLQ    +++F S W     + QM ++    R  + G K  V V+ L
Sbjct: 777 LFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKNEVRVFVL 830

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++  +I+E +L R + K  I   ++ A
Sbjct: 831 VSVGSIEEEILDRAKQKMGIDAKVIQA 857


>gi|67523645|ref|XP_659882.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|40745233|gb|EAA64389.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|259487671|tpe|CBF86520.1| TPA: catalytic subunit of the SWI/SNF chromatin remodeling complex
            (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1407

 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F S W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 934  AGGLGLNLQTADTVIIFDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSNSVE 987

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 988  EKILERAQFKLDMDGKVIQAGK 1009


>gi|224001656|ref|XP_002290500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973922|gb|EED92252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1653

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL     +++F S W        M++     R  + G ++ V V+ +I Q+ ++
Sbjct: 1160 AGGLGLNLATADTVIIFDSDW------NPMMDLQAQDRAHRIGQRKDVRVFRIITQSPVE 1213

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L R   K  + +L++ A K
Sbjct: 1214 EKILSRATEKLHMNELVVEAGK 1235


>gi|294655844|ref|XP_002770188.1| DEHA2C08294p [Debaryomyces hansenii CBS767]
 gi|199430649|emb|CAG86104.4| DEHA2C08294p [Debaryomyces hansenii]
          Length = 1034

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 101 IQEWNE-GKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQ 156
           I E+NE G    +F      G  G+NL     +++F S W    + Q M    RIG T+Q
Sbjct: 521 IDEYNEPGSSKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQ 580

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   V V+  +++N I+E VL+R   K  +  L++
Sbjct: 581 --------VRVFRFVSENAIEEKVLERATQKLRLDQLVI 611


>gi|70953048|ref|XP_745650.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526041|emb|CAH75841.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1029

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+E++E     +F      G  GLNL    N ++     W+    +Q  +R+      + 
Sbjct: 895 IKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNPHNDRQAEDRV-----HRL 948

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G K+ V++Y L  +NTI+E VL+  + K
Sbjct: 949 GQKKEVYIYRLCCKNTIEETVLKCCKAK 976


>gi|328867898|gb|EGG16279.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1282

 Score = 35.4 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 101 IQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGV 153
           + EWN    P    +L  H    G G+NLQ    +++F S W    DL+  Q    R+G 
Sbjct: 706 VVEWNRKDSPFFIFVLSTHAG--GLGMNLQTADTVIIFDSDWNPQMDLQA-QDRCHRVGQ 762

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +        V V+ LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 763 VNR--------VNVFRLISANSIEEKILERATDKLEIDAKIIQA 798


>gi|212640482|ref|YP_002317002.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
 gi|212561962|gb|ACJ35017.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
          Length = 898

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKA------LEVIIEKANAAPIIVAY------------ 75
           QL N    Y +EKH K++ +   K       +E I E   +  I   Y            
Sbjct: 707 QLCNHPALYLKEKHPKQIVERSHKVEKLLELVEQIRENGESCLIFTQYIQMGEMIQHLLS 766

Query: 76  -HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            H    +  L  + P+ +T D+    I+++  G+  +      + G GLNL    N ++ 
Sbjct: 767 THLKETVVFLNGSTPK-QTRDE---MIEQFQNGQFHIFILSLKAGGTGLNLTA-ANHVIH 821

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F  WW+       +E     R  + G  + V V+  I   TI+E +   L  K  + + L
Sbjct: 822 FDRWWN-----PAVENQATDRAYRIGQTKFVHVHKFITTGTIEEKIDDMLEKKQALNEQL 876

Query: 195 LNA 197
           + +
Sbjct: 877 IQS 879


>gi|94733808|emb|CAK04334.1| novel protein similar to human chromodomain helicase DNA binding
           protein 2 (CHD2) [Danio rerio]
          Length = 1694

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEED 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 920 IIERAKKKMVLDHLVIQRM 938


>gi|50290467|ref|XP_447665.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526975|emb|CAG60602.1| unnamed protein product [Candida glabrata]
          Length = 1039

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G K+ V VY  + +N I+
Sbjct: 517 AGGLGINLVTADTVVLFDSDWNPQADLQAM------DRAHRIGQKKQVHVYRFVTENAIE 570

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E VL+R   K  +  L++
Sbjct: 571 EKVLERAAQKLRLDQLVI 588


>gi|238489253|ref|XP_002375864.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
 gi|220698252|gb|EED54592.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
          Length = 819

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 120 GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           G G+NL     +++F S W    DL + Q    RIG T        R V VY L  + T+
Sbjct: 660 GQGINLMAADTVILFDSDWNPQQDL-QAQDRAHRIGQT--------RPVIVYRLATKGTV 710

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L++  +K  ++ L++
Sbjct: 711 EQTLLEKADSKRRLERLVI 729


>gi|26351357|dbj|BAC39315.1| unnamed protein product [Mus musculus]
          Length = 616

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDR-----AHRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|118343653|ref|NP_001071647.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975395|gb|AAO61783.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1806

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 869 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 922

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 923 ILERAKKKMVLDHLVIQRM 941


>gi|320586275|gb|EFW98954.1| rsc complex subunit [Grosmannia clavigera kw1407]
          Length = 1493

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++E+N    P  +      + G GLNLQ    ++++ S W     HQ +  +    R  +
Sbjct: 964  LREFNAPNSPYFMFLLSTRAGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHR 1017

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             G K  V +  LI   +I+E +L+R R K
Sbjct: 1018 IGQKNEVRILRLITSTSIEEKILERARYK 1046


>gi|157818785|ref|NP_001100935.1| chromodomain helicase DNA binding protein 1 [Rattus norvegicus]
 gi|149047090|gb|EDL99810.1| chromodomain helicase DNA binding protein 1 (predicted) [Rattus
           norvegicus]
          Length = 1711

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 920 ILERAKKKMVLDHLVIQRM 938


>gi|125550816|gb|EAY96525.1| hypothetical protein OsI_18430 [Oryza sativa Indica Group]
          Length = 1088

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNLQ    +++F S W     + QM ++    R  + G K  V V+ L
Sbjct: 778 LFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKNEVRVFVL 831

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++  +I+E +L R + K  I   ++ A
Sbjct: 832 VSVGSIEEEILDRAKQKMGIDAKVIQA 858


>gi|170727301|ref|YP_001761327.1| helicase domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169812648|gb|ACA87232.1| helicase domain protein [Shewanella woodyi ATCC 51908]
          Length = 937

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ   +I++ + L W+     ++++R+G  R  + G  + V V+ + + +++D
Sbjct: 589 AGGEGINLQEHCHIMINYDLPWN---PMRLVQRVG--RLYRYGQLKRVVVFNINSSDSLD 643

Query: 178 ELVLQRL--RTKSTIQDL 193
           E VL+ +  R ++ ++DL
Sbjct: 644 EKVLETMYGRVEAVVKDL 661


>gi|73952000|ref|XP_856236.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 4 [Canis familiaris]
          Length = 1701

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 857 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 910

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 911 ILERAKKKMVLDHLVIQRM 929


>gi|281344850|gb|EFB20434.1| hypothetical protein PANDA_017908 [Ailuropoda melanoleuca]
          Length = 1133

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 851 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 904

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 905 IIERAKKKMVLDHLVIQRM 923


>gi|213410130|ref|XP_002175835.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
 gi|212003882|gb|EEB09542.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
          Length = 1162

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 23/102 (22%)

Query: 112 LFAHPASC-----------GHGLNLQYGGNILVFFSLW---WDLEEHQQMIERIGVTRQR 157
           LF  PAS            G GLNLQ    +++F S W    DL+  Q    RIG T++ 
Sbjct: 710 LFNDPASIYTIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQA-QDRAHRIGQTKE- 767

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  V ++ LI + +++E +L R + K  I   ++ A K
Sbjct: 768 -------VRIFRLITEKSVEENILARAQYKLDIDGKVIQAGK 802


>gi|224089288|ref|XP_002186536.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1650

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 712 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 765

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 766 ILERAKKKMVLDHLVIQRM 784


>gi|149636559|ref|XP_001513135.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Ornithorhynchus anatinus]
          Length = 1807

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 869 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 922

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 923 ILERAKKKMVLDHLVIQRM 941


>gi|149058725|gb|EDM09882.1| rCG46237 [Rattus norvegicus]
          Length = 716

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELFWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|73952002|ref|XP_856275.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 5 [Canis familiaris]
          Length = 1702

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 858 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 911

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 912 ILERAKKKMVLDHLVIQRM 930


>gi|293352708|ref|XP_002728046.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Rattus
           norvegicus]
          Length = 1069

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELFWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|317145894|ref|XP_003189752.1| hypothetical protein AOR_1_1066144 [Aspergillus oryzae RIB40]
          Length = 181

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 110 PLLFAHPASCG-HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           PLL    A CG  G+NLQ  G++++   +WW++       ER    R  + G  + V VY
Sbjct: 84  PLLVT--AGCGGTGINLQ-SGSVIIQMEVWWNMNH-----ERQAYARCLRQGQDKMVKVY 135

Query: 169 YLIAQNTIDELVLQRLRTK 187
            L A+N+  ++++ + + +
Sbjct: 136 KLFAENSNIDIMISKCQVR 154


>gi|301785221|ref|XP_002928025.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like,
           partial [Ailuropoda melanoleuca]
          Length = 1114

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 858 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 911

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 912 IIERAKKKMVLDHLVIQRM 930


>gi|301768523|ref|XP_002919680.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Ailuropoda melanoleuca]
          Length = 1742

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 898 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 951

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 952 ILERAKKKMVLDHLVIQRM 970


>gi|109658944|gb|AAI17135.1| Chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1709

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|68299795|ref|NP_001261.2| chromodomain-helicase-DNA-binding protein 1 [Homo sapiens]
 gi|269849549|sp|O14646|CHD1_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|119616504|gb|EAW96098.1| chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1710

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|73951996|ref|XP_848459.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 2 [Canis familiaris]
          Length = 1711

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 867 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 920

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 921 ILERAKKKMVLDHLVIQRM 939


>gi|326332827|ref|ZP_08199085.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
 gi|325949385|gb|EGD41467.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
          Length = 735

 Score = 35.4 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++ ++     + G G+NLQ   N LV   L W   E  Q I+R+      + G    
Sbjct: 612 NDPEVEIIVCSLTAAGVGVNLQAASN-LVLAELSWTDAEQTQAIDRV-----HRIGQTEP 665

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V  + +IA  TID  + + + +K+ +    L+   +E
Sbjct: 666 VTAWRIIASQTIDTRIAELIDSKAGLAARALDGSDEE 702


>gi|317033838|ref|XP_001395547.2| C-5 cytosine-specific DNA methylase [Aspergillus niger CBS 513.88]
          Length = 2044

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 122  GLNLQYGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            GLNLQ   N ++F S       +D E    MI+ IG  R R+ G  R V VY+L+A+++I
Sbjct: 1943 GLNLQ-SANHVIFLSPMNAETQYDYE--SAMIQAIG--RSRRYGQTRRVHVYHLLAKHSI 1997

Query: 177  DELVLQRLRTKSTIQ 191
            D  + Q  R +  I+
Sbjct: 1998 DVNIFQERRHQVLIE 2012


>gi|290889294|gb|ADD69945.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1808

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 865 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 918

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 919 ILERAKKKMVLDHLVIQRM 937


>gi|328773251|gb|EGF83288.1| hypothetical protein BATDEDRAFT_84829 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 825

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 17/146 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
           DE ++ L    + +N +  IV   F S L  +Q A  +   L           +++    
Sbjct: 656 DEVVRILAENQKNSNVSKTIVFSQFTSMLNVIQNALDETDILYCRYDGGMKRKEREQTLF 715

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +  KI ++         G+NL    N ++    WW+      M+E   + R  + G 
Sbjct: 716 HFKSSEKINVMLISTKCGAAGINLTCA-NFVILVDPWWN-----PMMEEQAIGRVHRIGQ 769

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK 187
           +  V V  L+ ++TI+E V+++ + K
Sbjct: 770 RNPVHVVRLVMKDTIEEKVMEKQKQK 795


>gi|239985588|ref|NP_031716.2| chromodomain-helicase-DNA-binding protein 1 [Mus musculus]
 gi|109732363|gb|AAI15823.1| Chromodomain helicase DNA binding protein 1 [Mus musculus]
 gi|148688507|gb|EDL20454.1| chromodomain helicase DNA binding protein 1 [Mus musculus]
          Length = 1711

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 920 ILERAKKKMVLDHLVIQRM 938


>gi|118373098|ref|XP_001019743.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89301510|gb|EAR99498.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1254

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     ++++ S W    + Q M       R  + G K  V VY LI++NTI+E 
Sbjct: 541 GLGINLATADTVVLYDSDWNPQMDLQAM------DRAHRIGQKNIVNVYRLISENTIEEK 594

Query: 180 VLQR 183
           +++R
Sbjct: 595 IIER 598


>gi|1345773|sp|P40201|CHD1_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|455015|gb|AAB08486.1| DNA-binding protein [Mus musculus]
          Length = 1711

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 920 ILERAKKKMVLDHLVIQRM 938


>gi|296194069|ref|XP_002744792.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Callithrix
           jacchus]
          Length = 1713

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 870 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 923

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 924 ILERAKKKMVLDHLVIQRM 942


>gi|293341309|ref|XP_002724934.1| PREDICTED: zinc finger, RAN-binding domain containing 3-like
           [Rattus norvegicus]
          Length = 1037

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELFWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 SLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|114600959|ref|XP_517850.2| PREDICTED: chromodomain helicase DNA binding protein 1 [Pan
           troglodytes]
          Length = 1710

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|391640|dbj|BAA03262.1| ORF2 [Gallus gallus]
          Length = 560

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 116 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGSVEED 169

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 170 ILERAKKKMVLDHLVIQRM 188


>gi|84619206|emb|CAJ42330.1| SNF2 related domain [Streptomyces steffisburgensis]
          Length = 618

 Score = 35.4 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P+L     + G GLNL    +++  +  WW+       +E     R  + G +R + V+ 
Sbjct: 512 PVLLLSLRAAGFGLNLTRANHVM-HYDRWWN-----PAVEEQATDRAHRIGQQRTLNVHA 565

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLL-------LNALKKETIH 204
           L+   TI++ + Q   TK    D++       L  L  E +H
Sbjct: 566 LVTGGTIEDHIAQMHETKRGFADVVSGNTEAALAELSDEELH 607


>gi|2645429|gb|AAB87381.1| CHD1 [Homo sapiens]
          Length = 1709

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|149726480|ref|XP_001504655.1| PREDICTED: chromodomain helicase DNA binding protein 1 [Equus
           caballus]
          Length = 1713

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 869 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 922

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 923 ILERAKKKMVLDHLVIQRM 941


>gi|47206405|emb|CAG01534.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1491

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 902 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGTVEED 955

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 956 IIERAKKKMVLDHLVIQRM 974


>gi|326678432|ref|XP_002666261.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Danio rerio]
          Length = 607

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           + G GL      ++ VF  L+W+   +++ +    RIG T          V ++YLIA+ 
Sbjct: 96  AAGQGLTFTAASHV-VFAELYWNPGHIKQAEDRAHRIGQTA--------TVHIHYLIAKG 146

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T D ++   L  K T+    LN  K+
Sbjct: 147 TFDTVMWAMLNRKETVTGSALNGKKE 172


>gi|297675709|ref|XP_002815806.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Pongo
           abelii]
          Length = 1709

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 921

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 922 ILERAKKKMVLDHLVIQRM 940


>gi|297791319|ref|XP_002863544.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309379|gb|EFH39803.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2251

 Score = 35.4 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     +CG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1068 IARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1121

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1122 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1158


>gi|281350318|gb|EFB25902.1| hypothetical protein PANDA_008326 [Ailuropoda melanoleuca]
          Length = 1566

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 722 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 775

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 776 ILERAKKKMVLDHLVIQRM 794


>gi|242089493|ref|XP_002440579.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
 gi|241945864|gb|EES19009.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
          Length = 1127

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM ++    R  + G K  V V+ L++  +I+
Sbjct: 824 AGGLGLNLQTADTVIIFDSDW-----NPQM-DQQAEDRAHRIGQKNEVRVFVLVSVGSIE 877

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +L R + K  I   ++ A
Sbjct: 878 EEILDRAKQKMGIDAKVIQA 897


>gi|118378915|ref|XP_001022631.1| HSA family protein [Tetrahymena thermophila]
 gi|89304398|gb|EAS02386.1| HSA family protein [Tetrahymena thermophila SB210]
          Length = 1232

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNLQ    +++F S W     + QM ++    R  + G K  V VY L+    I+E 
Sbjct: 821 GLGLNLQTADTVIIFDSDW-----NPQM-DQQAQDRAHRIGSKSEVRVYRLVTNTWIEEE 874

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +L +   K  + ++++ A
Sbjct: 875 ILSKAAYKMGLDEMIIQA 892


>gi|45384402|ref|NP_990272.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
 gi|2501846|gb|AAC60282.1| chromo-helicase-DNA-binding on the Z chromosome protein [Gallus
           gallus]
          Length = 1808

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 865 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 918

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 919 ILERAKKKMVLDHLVIQRM 937


>gi|302922109|ref|XP_003053398.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
 gi|256734339|gb|EEU47685.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
          Length = 1013

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N+  +IP+      + G G+NL     +++F     D  ++ Q  +     R  + 
Sbjct: 893 IDEFNDDPEIPVFLLTTGAGGTGINLTAANKVIIF-----DQSDNPQ-DDIQAENRAHRL 946

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G KR V +  LIA +TI+EL+ +  + K  + + +  A++ E   V
Sbjct: 947 GQKRDVEIIRLIASHTIEELIYKACQKKIELANKVTGAVEDEDAAV 992


>gi|269969347|sp|B6ZLK2|CHD1_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|218117883|dbj|BAH03306.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
          Length = 1719

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 864 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 917

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 918 ILERAKKKMVLDHLVIQRM 936


>gi|115462049|ref|NP_001054624.1| Os05g0144300 [Oryza sativa Japonica Group]
 gi|53749343|gb|AAU90202.1| putative transcriptional regulator [Oryza sativa Japonica Group]
 gi|113578175|dbj|BAF16538.1| Os05g0144300 [Oryza sativa Japonica Group]
          Length = 1128

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNLQ    +++F S W     + QM ++    R  + G K  V V+ L
Sbjct: 818 LFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPQMDQQ-AEDRAHRIGQKNEVRVFVL 871

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++  +I+E +L R + K  I   ++ A
Sbjct: 872 VSVGSIEEEILDRAKQKMGIDAKVIQA 898


>gi|124807036|ref|XP_001350892.1| DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
 gi|23497022|gb|AAN36572.1|AE014852_16 DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
          Length = 1647

 Score = 35.4 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNLQ    I +    WW+     Q I+     R  + G  + V+    I +NT++E 
Sbjct: 1557 GEGLNLQVANRIFI-VDPWWNPAAELQAIQ-----RAHRIGQTKTVYAIRFIIENTVEEK 1610

Query: 180  VLQRLRTKSTIQDLLL----NALKK 200
            ++Q    K  + D  +    NA++K
Sbjct: 1611 IIQLQNKKQLVFDSTIGDSGNAMQK 1635


>gi|255528070|ref|ZP_05394903.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296186302|ref|ZP_06854706.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255508235|gb|EET84642.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296049103|gb|EFG88533.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1081

 Score = 35.4 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + ++N+G+  +      + G GLNL    ++++ F  WW+       +E     R  + G
Sbjct: 969  VNDFNQGENSVFLISLKAGGTGLNLT-SADVVIHFDPWWN-----PAVEEQATDRAHRIG 1022

Query: 161  FKRAVFVYYLIAQNTIDELVL 181
             K+ V V  ++A+ TI+E ++
Sbjct: 1023 QKKVVEVIKIVAKGTIEEKII 1043


>gi|170754301|ref|YP_001781764.1| phage helicase [Clostridium botulinum B1 str. Okra]
 gi|169119513|gb|ACA43349.1| phage helicase [Clostridium botulinum B1 str. Okra]
          Length = 365

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDL-------ARLQK--AFPQGRTLDKDPCTIQEWNEGKIPLL 112
           ++E +    +I+ Y+F  ++        RL+K  +   G+T D     ++ +      ++
Sbjct: 230 LLE-STEDRVIIFYNFTEEMEQIKEVCGRLEKPISIVNGQTKD-----LENYKTKDNTVV 283

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   GLNLQ   N ++++SL    E  +Q        R  + G  R    +YLI 
Sbjct: 284 LVQYQAGAMGLNLQLS-NKIIYYSLPLASELFEQ-----SKKRTHRIGQTRTCMYWYLIT 337

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
           +  I+E + + L+ +    + L   L+
Sbjct: 338 KGCIEEQIFETLKERRDYTNKLFEELE 364


>gi|109078102|ref|XP_001097125.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Macaca
           mulatta]
          Length = 1712

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 870 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 923

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 924 ILERAKKKMVLDHLVIQRM 942


>gi|31322808|gb|AAP31846.1| Brg1p [Tetrahymena thermophila]
          Length = 1228

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    + ++N+   P  +      + G GLNLQ    +++F S W     + QM ++  
Sbjct: 790 DERGVKMAQFNQPNSPYNVFILSTRAGGLGLNLQTADTVIIFDSDW-----NPQM-DQQA 843

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K  V VY L+    I+E +L +   K  + ++++ A
Sbjct: 844 QDRAHRIGSKSEVRVYRLVTNTWIEEEILSKAAYKMGLDEMIIQA 888


>gi|311249889|ref|XP_003123851.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus
           scrofa]
          Length = 1706

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 862 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 915

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 916 ILERAKKKMVLDHLVIQRM 934


>gi|158259161|dbj|BAF85539.1| unnamed protein product [Homo sapiens]
          Length = 1049

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + T++E 
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 925 IIERAKKKMVLDHLVIQRM 943


>gi|332007781|gb|AED95164.1| chromatin remodeling 4 protein [Arabidopsis thaliana]
          Length = 2223

 Score = 35.4 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     +CG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1065 IARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1118

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1119 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|284991028|ref|YP_003409582.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284064273|gb|ADB75211.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 714

 Score = 35.4 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+  + +      + G GLNLQ   NI++    W D E+ Q       + R  + G    
Sbjct: 595 NDPDVAVAVCSLTAAGVGLNLQVASNIVLAELSWTDAEQTQ------AIDRSHRIGQTEP 648

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V  + +IA  TID  + + + +K+ +    L+   +E
Sbjct: 649 VTAWRIIAAQTIDARIAELIDSKAGLAARALDGSDEE 685


>gi|167539902|ref|XP_001741408.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894110|gb|EDR22194.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 956

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E +I +      + G G+ L +  + +VF  L+W     +Q  +R+      + G K  V
Sbjct: 467 EKRIRIAILSVTAAGTGITL-HSADTVVFAELYWTPGVLRQAEDRV-----HRIGQKNDV 520

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++YLI + T+D+L+   L  K  I    L+ 
Sbjct: 521 RIFYLIGKQTVDDLIWPLLEKKLKISGETLDG 552


>gi|145358870|ref|NP_199293.2| CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding / protein
            binding / zinc ion binding [Arabidopsis thaliana]
          Length = 2242

 Score = 35.4 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     +CG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1065 IARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1118

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1119 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|2660669|gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis thaliana]
 gi|9758384|dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana]
          Length = 2228

 Score = 35.4 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 101  IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  +N+ K   +F     +CG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 1051 IARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDS---DFNPHADIQ---AMNRAHRI 1104

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1105 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1141


>gi|311742708|ref|ZP_07716517.1| helicase [Aeromicrobium marinum DSM 15272]
 gi|311314336|gb|EFQ84244.1| helicase [Aeromicrobium marinum DSM 15272]
          Length = 717

 Score = 35.4 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + E+  G +P+L     + G GLNL    ++ + +  WW+       +E     R  + G
Sbjct: 606 VDEFQAGDLPVLLLSLRAGGTGLNLTAADHV-IHYDRWWN-----PAVEDQATDRAHRIG 659

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + V V+ L    T+++ +   +  K  + D ++N
Sbjct: 660 QTKPVQVHRLTVGGTVEDGIADLIERKRALADAVIN 695


>gi|154299240|ref|XP_001550040.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
 gi|150857501|gb|EDN32693.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
          Length = 1433

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 939  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 992

Query: 178  ELVLQRLRTK 187
            E +L+R + K
Sbjct: 993  EKILERAKFK 1002


>gi|255955967|ref|XP_002568736.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590447|emb|CAP96635.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1399

 Score = 35.4 bits (80), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 930  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 983

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 984  EKILERAQFKLDMDGKVIQAGK 1005


>gi|183233301|ref|XP_654593.2| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801642|gb|EAL49206.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 956

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E +I +      + G G+ L +  + +VF  L+W     +Q  +R+      + G K  V
Sbjct: 467 EKRIRIAILSVTAAGTGITL-HSADTVVFAELYWTPGVLRQAEDRV-----HRIGQKNDV 520

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++YLI + T+D+L+   L  K  I    L+ 
Sbjct: 521 RIFYLIGKQTVDDLIWPLLEKKLKISGETLDG 552


>gi|156051220|ref|XP_001591571.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980]
 gi|154704795|gb|EDO04534.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1410

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 920 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 973

Query: 178 ELVLQRLRTK 187
           E +L+R + K
Sbjct: 974 EKILERAKFK 983


>gi|297835518|ref|XP_002885641.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331481|gb|EFH61900.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1122

 Score = 35.0 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   +C  G++L     +++   +W         +E   ++R  + G KRAVF+Y+L
Sbjct: 993  VLLASTKACSEGISLVGASRVVILDVVW------NPSVESQAISRAFRLGQKRAVFIYHL 1046

Query: 171  IAQNT 175
            + ++T
Sbjct: 1047 MVKDT 1051


>gi|189198415|ref|XP_001935545.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187981493|gb|EDU48119.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 916

 Score = 35.0 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W   ++ Q M       R  + G  R V VY    +NT+++ 
Sbjct: 751 GQGINLAAADTVILFDSDWNPQQDLQAM------DRAHRIGQTRNVIVYRFATRNTVEQK 804

Query: 180 VLQRLRTKSTIQDLLL 195
           +L+    K  ++ L++
Sbjct: 805 LLESAEAKRRLEKLVI 820


>gi|195124269|ref|XP_002006616.1| GI18484 [Drosophila mojavensis]
 gi|193911684|gb|EDW10551.1| GI18484 [Drosophila mojavensis]
          Length = 603

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  RL    P     D+D   I+E+N    P  +      + G G+NL     ++++ S 
Sbjct: 387 DYCRLDGQTPHE---DRDKL-IREYNMENSPKFIFMLSTRAGGLGINLATADVVIIYDSD 442

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           W    + Q M       R  + G K+ V V+ LIA+ T+DE +L+    K
Sbjct: 443 WNPQMDLQAM------DRAHRIGQKKQVRVFRLIAEKTVDEKILEHANIK 486


>gi|149730550|ref|XP_001489638.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Equus
           caballus]
          Length = 1072

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA+ T+D
Sbjct: 399 AAGQGLTFTAATHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIAKGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 TLMWGMLNRKAQVTGSTLNGRKEQ 476


>gi|126651081|ref|ZP_01723292.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
 gi|126592282|gb|EAZ86331.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
          Length = 504

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 13/88 (14%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+  ++ + + L W+  + +Q   RIG  R  + G +  V +Y L  +NTI+E 
Sbjct: 421 GEGINLQFCHHV-INYDLPWNPMKLEQ---RIG--RVHRLGQEHDVHIYNLAIENTIEEK 474

Query: 180 VLQRLRTKSTI-------QDLLLNALKK 200
           +L+ L TK  +        D +L  LKK
Sbjct: 475 ILELLHTKIDVFEKVVGDLDAILTNLKK 502


>gi|330922513|ref|XP_003299868.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
 gi|311326280|gb|EFQ92036.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
          Length = 916

 Score = 35.0 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W   ++ Q M       R  + G  R V VY    +NT+++ 
Sbjct: 751 GQGINLAAADTVILFDSDWNPQQDLQAM------DRAHRIGQTRNVIVYRFATRNTVEQK 804

Query: 180 VLQRLRTKSTIQDLLL 195
           +L+    K  ++ L++
Sbjct: 805 LLESAEAKRRLEKLVI 820


>gi|300708724|ref|XP_002996536.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
 gi|239605845|gb|EEQ82865.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
          Length = 594

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N G + +      +C  GL L     ++VF  L+W+     Q  +RI      + G   +
Sbjct: 483 NNGNVRVALLSVTACNTGLTLT-AAKLVVFAELYWNPGTLLQAEDRI-----HRIGQSSS 536

Query: 165 VFVYYLIAQNTIDELV 180
           V ++YL+ + T+DE V
Sbjct: 537 VDIHYLVCKGTVDEYV 552


>gi|238880670|gb|EEQ44308.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida albicans WO-1]
          Length = 1302

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 898 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 951

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 952 EVILERAHQKLDIDGKVIQAGK 973


>gi|114581132|ref|XP_515805.2| PREDICTED: zinc finger, RAN-binding domain containing 3 [Pan
           troglodytes]
          Length = 977

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 591 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 644

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 645 TLMWGMLNRKAQVTGSTLNGRKEK 668


>gi|68471523|ref|XP_720068.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
 gi|68471790|ref|XP_719938.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441784|gb|EAL01078.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441919|gb|EAL01212.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
          Length = 1303

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 898 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 951

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 952 EVILERAHQKLDIDGKVIQAGK 973


>gi|241952923|ref|XP_002419183.1| ATP-dependent helicase, putative; chromatin structure-remodeling
           complex protein, putative; nuclear protein Sth1/Nps1
           homologue, putative [Candida dubliniensis CD36]
 gi|223642523|emb|CAX42772.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1300

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 893 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 946

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 947 EVILERAHQKLDIDGKVIQAGK 968


>gi|19114237|ref|NP_593325.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe 972h-]
 gi|74676241|sp|P87114|FFT1_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase fft1; AltName:
           Full=Fun thirty-related protein 1
 gi|2094863|emb|CAB08602.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe]
          Length = 944

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL    NI++ F   ++  +  Q        R  + G  R V VY LI +NTI+
Sbjct: 841 SGGFGINLT-CANIVILFDCSFNPFDDMQ-----AEDRAHRVGQTRPVHVYRLITKNTIE 894

Query: 178 ELVLQRLRTKSTIQDLL 194
           E + +   TK T++  L
Sbjct: 895 ENIRRLANTKLTLESSL 911


>gi|15230098|ref|NP_189077.1| chr40 (chromatin remodeling 40); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|11994696|dbj|BAB02934.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1132

 Score = 35.0 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   +C  G++L     +++   +W         +E   ++R  + G KRAVF+Y+L
Sbjct: 1003 VLLASTKACSEGISLVGASRVVILDVVW------NPSVESQAISRAFRIGQKRAVFIYHL 1056

Query: 171  IAQNT 175
            + ++T
Sbjct: 1057 MVKDT 1061


>gi|66358754|ref|XP_626555.1| SWI/SNF related transcriptional regulator ATpase [Cryptosporidium
            parvum Iowa II]
 gi|46227736|gb|EAK88656.1| SWI/SNF related putative transcriptional regulator ATpase
            [Cryptosporidium parvum Iowa II]
          Length = 1552

 Score = 35.0 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNLQ    +++F S W     HQ +  +   +R  + G K  V V   ++ + ++EL
Sbjct: 970  GLGLNLQAADTVIIFDSDW---NPHQDLQAQ---SRAHRMGQKNEVRVLRFVSISGVEEL 1023

Query: 180  VLQRLRTKSTIQDLLLNA 197
            VL+R + K  I   ++ A
Sbjct: 1024 VLKRAQKKLEIDHKIIQA 1041


>gi|301062656|ref|ZP_07203283.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300443246|gb|EFK07384.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 895

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           + G +P +     + G GLNL    N ++ F  WW+       +E     R  + G K+ 
Sbjct: 787 SPGYVPFMVLSLKAGGIGLNLTE-ANHVIHFDRWWN-----PAVENQATDRAFRIGQKKN 840

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V V+  + Q T++E +   L  KS + 
Sbjct: 841 VVVHKFLTQGTVEEKIDAMLEEKSRLS 867


>gi|221488620|gb|EEE26834.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
          Length = 872

 Score = 35.0 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    +Q + R+      + G K++ ++Y   +  TI+E 
Sbjct: 594 GCGVNL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQKKSCYIYRFFSTGTIEEK 647

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +  +L++
Sbjct: 648 IYQRQICKDGLSAMLVS 664


>gi|237837635|ref|XP_002368115.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965779|gb|EEB00975.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221509119|gb|EEE34688.1| transcriptional regulator atrx, putative [Toxoplasma gondii VEG]
          Length = 873

 Score = 35.0 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N LV F   W+    +Q + R+      + G K++ ++Y   +  TI+E 
Sbjct: 594 GCGVNL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQKKSCYIYRFFSTGTIEEK 647

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +  +L++
Sbjct: 648 IYQRQICKDGLSAMLVS 664


>gi|75764646|ref|ZP_00744080.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74487868|gb|EAO51650.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 340

 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 20/195 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA     Y+E K         ++ ++ 
Sbjct: 156 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGS---YNEHK---------LQYIKD 203

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IE  N   II+ Y+F  +   L     +   T++ D   +  + +    +      +  
Sbjct: 204 LIESTNDR-IIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGA 262

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +V+F+L     +  ++ E+    R  + G KR  F YYL+   +I+  +
Sbjct: 263 MGLNLQ-KANKIVYFTL----TDKSELFEQ-SKKRTLRIGQKRLGFYYYLLTDGSIEWRM 316

Query: 181 LQRLRTKSTIQDLLL 195
           L  L+ +    D L 
Sbjct: 317 LDVLKERRDYTDALF 331


>gi|317144593|ref|XP_001820221.2| SNF2 family helicase [Aspergillus oryzae RIB40]
          Length = 1183

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +E  + ++ L+  H AS  HGL++     + +   +W      Q  +E   + R  + G 
Sbjct: 970  REQEDVRVLLMDLHQAS--HGLHIANASRVFIVNPIW------QPNVESQAIKRAHRIGQ 1021

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKS 188
             R VFV  L+ + T+++ +L+R +  S
Sbjct: 1022 TRPVFVETLVLKGTLEDKMLERRKAMS 1048


>gi|260940993|ref|XP_002615336.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
 gi|238850626|gb|EEQ40090.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
          Length = 1269

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 897 AGGLGLNLQSADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 950

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 951 EVILERAHQKLDIDGKVIQAGK 972


>gi|296132117|ref|YP_003639364.1| SNF2-related protein [Thermincola sp. JR]
 gi|296030695|gb|ADG81463.1| SNF2-related protein [Thermincola potens JR]
          Length = 1084

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +N G   +      + G GLNL  G +++V F  WW+       +E     R  + G
Sbjct: 975  VRAFNAGDGQVFLISLKAGGTGLNLT-GADMVVHFDPWWN-----PAVEDQATDRAYRIG 1028

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             ++ V V+ L+ + TI+E +    + K  + D
Sbjct: 1029 QQQVVQVFKLVTRGTIEEKIFTLQQKKKELID 1060


>gi|254443940|ref|ZP_05057416.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
 gi|198258248|gb|EDY82556.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
          Length = 1069

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G+T +++    Q  N+  +        + G GLNL    + +V +  WW+       +E 
Sbjct: 951  GQTKNREELVDQFQNDETVTAFLLSLRAAGSGLNLT-AASYVVLYDPWWN-----PAVEA 1004

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + R  + G K  V  Y LIA++++++ + Q L+ K
Sbjct: 1005 QAIDRTHRIGQKNTVNAYRLIAKDSVEQKI-QSLQVK 1040


>gi|193785976|dbj|BAG54763.1| unnamed protein product [Homo sapiens]
          Length = 827

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D L
Sbjct: 149 GQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLDTL 202

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           +   L  K+ +    LN  +KE I  
Sbjct: 203 MWGMLNRKAQVTGSTLNG-RKEKIQA 227


>gi|168206269|ref|ZP_02632274.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|170662244|gb|EDT14927.1| putative helicase [Clostridium perfringens E str. JGS1987]
          Length = 1067

 Score = 35.0 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-Q 102
            K+  ++ I++ A+ +   I++   F S L ++++ F +         G T  KD   I +
Sbjct: 897  KLTVVKEIVKDASESGKKILLFSQFTSVLKKIEEDFKKEDISYLYLDGGTYAKDRVEIVK 956

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +NE   I +      + G GLNL    ++++ F  WW+       +E     R  + G 
Sbjct: 957  NFNEDSNIKVFLISLKAGGVGLNLT-SASVVIHFDPWWN-----PAVEDQATDRAHRFGQ 1010

Query: 162  KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
            +  V V  L+A++TI+E +VL +   +  IQ L+
Sbjct: 1011 ENKVEVIKLVAKDTIEEKIVLMQEDKRELIQSLM 1044


>gi|66360055|ref|XP_627205.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
 gi|46228613|gb|EAK89483.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
          Length = 1371

 Score = 35.0 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I L  +   S G GLNL  G + ++F+   W+       ++R  + R  + G  R V +
Sbjct: 1106 RIYLFISSTRSGGVGLNLT-GADTVIFYDSDWN-----PAMDRQAMDRCHRIGQTRDVNI 1159

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y L+++ TI+E + ++   K  + D++++
Sbjct: 1160 YRLVSEWTIEESIFKKQLQKRLLDDVVVD 1188


>gi|238485918|ref|XP_002374197.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220699076|gb|EED55415.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 806

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E  + ++ L+  H AS  HGL++     + +   +W      Q  +E   + R  + G 
Sbjct: 593 REQEDVRVLLMDLHQAS--HGLHIANASRVFIVNPIW------QPNVESQAIKRAHRIGQ 644

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKS 188
            R VFV  L+ + T+++ +L+R +  S
Sbjct: 645 TRPVFVETLVLKGTLEDKMLERRKAMS 671


>gi|291391484|ref|XP_002712469.1| PREDICTED: zinc finger, RAN-binding domain containing 3
           [Oryctolagus cuniculus]
          Length = 1062

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 365 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 418

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
            L+   L  K+ +    LN  K+
Sbjct: 419 TLMWGMLNRKAQVTGSTLNGRKE 441


>gi|229118736|ref|ZP_04248087.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
 gi|228664704|gb|EEL20195.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|242214113|ref|XP_002472881.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728002|gb|EED81905.1| predicted protein [Postia placenta Mad-698-R]
          Length = 799

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 110 PLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           P +      CG  GLNL    N L+   L W+     Q  +R+      + G ++ VFV 
Sbjct: 687 PKVILISTKCGGVGLNL-VSANRLINMDLGWNYASESQAYDRV-----HRLGQEKEVFVK 740

Query: 169 YLIAQNTIDELVLQRLRTK 187
            L+ +NTI+E +L+   TK
Sbjct: 741 RLVVRNTIEERMLKLQETK 759


>gi|309812493|ref|ZP_07706246.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308433548|gb|EFP57427.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
          Length = 1119

 Score = 35.0 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + E+  G+    F    + G GL L     ++V    WW+     Q I+R       + G
Sbjct: 1011 VDEFKSGEADAFFISLKAGGTGLTLTEADYVIVL-DPWWNPAAEDQAIDR-----AHRIG 1064

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY  ++  TI+E V++    K  + D +++A
Sbjct: 1065 QTKHVMVYRYVSAGTIEEKVMELQEKKRKLFDDVVDA 1101


>gi|313238906|emb|CBY13901.1| unnamed protein product [Oikopleura dioica]
          Length = 769

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     HQ M  +    R  + G K  V V   +   +++
Sbjct: 359 AGGLGLNLQTADTVIIFDSDW---NPHQDMQAQ---DRAHRIGQKNEVRVLRFVTSQSVE 412

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L   R K T+ + ++ A K
Sbjct: 413 ERILAAARYKLTVDEKVIQAGK 434


>gi|327260656|ref|XP_003215150.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Anolis carolinensis]
          Length = 1095

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 397 AAGQGLTFTAATHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTMD 450

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
            L+   L  K+ +    LN  KKE +  
Sbjct: 451 PLMWAMLNRKARVTGTTLNG-KKEKLQA 477


>gi|304406180|ref|ZP_07387837.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
 gi|304344764|gb|EFM10601.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
          Length = 1110

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            Q +N G+  +      + G GLNL     + + + +WW+    QQ        R  + G 
Sbjct: 1002 QRFNAGEKEVFLISLKAGGTGLNLTGADTV-IMYDMWWNPAVEQQ-----AADRAHRIGQ 1055

Query: 162  KRAVFVYYLIAQNTIDE 178
            K  V V  L+AQ T+++
Sbjct: 1056 KNVVQVIRLVAQGTVED 1072


>gi|229105848|ref|ZP_04236475.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
 gi|228677569|gb|EEL31819.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|303318849|ref|XP_003069424.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109110|gb|EER27279.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 1415

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 936  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 989

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 990  ERILERAQFKLDMDGKVIQAGK 1011


>gi|320582098|gb|EFW96316.1| helicase of the Snf2/Rad54 family [Pichia angusta DL-1]
          Length = 972

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGF 161
           +    +P++     + G G+NL    N+++F   +   D ++ +    R+G T++     
Sbjct: 869 YEADDVPVMLLSTKAGGFGINLVCANNVIIFDQSFNPHDDKQAEDRAHRVGQTKE----- 923

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK 187
              V VY +I ++TI+E +LQ  + K
Sbjct: 924 ---VNVYRIICRDTIEENILQLAQNK 946


>gi|299116533|emb|CBN74721.1| SNF2-related domain-containing protein [Ectocarpus siliculosus]
          Length = 1075

 Score = 35.0 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVY 168
           L +    + G GLNL     I++F S W    + Q M  + R+G T++        V +Y
Sbjct: 831 LFYLSTKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKE--------VSMY 882

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLL 194
            L++  T++E + QR   K  + DL+
Sbjct: 883 RLLSTGTLEESIFQRQIFKGALYDLI 908


>gi|229063904|ref|ZP_04200205.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
 gi|229136057|ref|ZP_04264813.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228647378|gb|EEL03457.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228716374|gb|EEL68082.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229164183|ref|ZP_04292118.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
 gi|228619300|gb|EEK76191.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
          Length = 840

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 732 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 785

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 786 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 822


>gi|255071819|ref|XP_002499584.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226514846|gb|ACO60842.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1271

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F S W     + QM +     R  + G KR V +  ++   TI+
Sbjct: 899 AGGMGLNLQTADTVIIFDSDW-----NPQM-DAQAEDRAHRIGQKRRVKILTMVCDGTIE 952

Query: 178 ELVLQRLRTKSTI 190
           E +L++   K  I
Sbjct: 953 EDILRKANEKRAI 965


>gi|12853471|dbj|BAB29753.1| unnamed protein product [Mus musculus]
          Length = 473

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 208 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 261

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 262 ILERAKKKMVLDHLVIQRM 280


>gi|50288627|ref|XP_446743.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526051|emb|CAG59670.1| unnamed protein product [Candida glabrata]
          Length = 1354

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +       R  + G K  V +  LI  ++++
Sbjct: 852 AGGLGLNLQSADTVIIFDTDW---NPHQDL---QAQDRAHRIGQKNEVRILRLITTDSVE 905

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 906 EVILERAMQKLDIDGKVIQAGK 927


>gi|321251541|ref|XP_003192100.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
 gi|317458568|gb|ADV20313.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
          Length = 1202

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    QQ I+R+      + G  + V+V   I + T+++ 
Sbjct: 1103 GVGLNLTMA-NYVFLMDTWWNEAIEQQAIDRV-----HRLGQNKPVYVTRYIIKGTVEKR 1156

Query: 180  VLQRLRTKSTIQDLLLN--ALKKET 202
            +++  R+K+ + +  L+  A  KET
Sbjct: 1157 IMKIQRSKTALVNASLSKGAKTKET 1181


>gi|229020462|ref|ZP_04177215.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
 gi|229026691|ref|ZP_04183032.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228734643|gb|EEL85296.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228740838|gb|EEL91083.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|119181968|ref|XP_001242147.1| hypothetical protein CIMG_06043 [Coccidioides immitis RS]
          Length = 1410

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 931  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 984

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 985  ERILERAQFKLDMDGKVIQAGK 1006


>gi|229099671|ref|ZP_04230598.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
 gi|228683741|gb|EEL37692.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|320034578|gb|EFW16522.1| SNF2-family ATP-dependent chromatin remodeling factor snf21
            [Coccidioides posadasii str. Silveira]
          Length = 1410

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 931  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 984

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 985  ERILERAQFKLDMDGKVIQAGK 1006


>gi|290889290|gb|ADD69942.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1785

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 851 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKASVEED 904

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 905 ILERAKKKMVLDHLVIQRM 923


>gi|229169956|ref|ZP_04297649.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
 gi|228613474|gb|EEK70606.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229076456|ref|ZP_04209418.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
 gi|228706642|gb|EEL58853.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
          Length = 855

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 747 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 800

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 801 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|294658800|ref|XP_461131.2| DEHA2F17732p [Debaryomyces hansenii CBS767]
 gi|202953393|emb|CAG89514.2| DEHA2F17732p [Debaryomyces hansenii]
          Length = 1295

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 907 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 960

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 961 EVILERAHQKLDIDGKVIQAGK 982


>gi|254576891|ref|XP_002494432.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
 gi|238937321|emb|CAR25499.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
          Length = 1343

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 865 AGGLGLNLQSADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 918

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 919 EVILERAMQKLDIDGKVIQAGK 940


>gi|156846474|ref|XP_001646124.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116797|gb|EDO18266.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1385

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 904 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 957

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 958 EVILERAMQKLDIDGKVIQAGK 979


>gi|119632036|gb|EAX11631.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
 gi|119632038|gb|EAX11633.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
          Length = 1019

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 339 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 392

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 393 TLMWGMLNRKAQVTGSTLNGRKEK 416


>gi|83768080|dbj|BAE58219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1021

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E  + ++ L+  H AS  HGL++     + +   +W      Q  +E   + R  + G 
Sbjct: 808 REQEDVRVLLMDLHQAS--HGLHIANASRVFIVNPIW------QPNVESQAIKRAHRIGQ 859

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKS 188
            R VFV  L+ + T+++ +L+R +  S
Sbjct: 860 TRPVFVETLVLKGTLEDKMLERRKAMS 886


>gi|297668526|ref|XP_002812483.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Pongo abelii]
          Length = 1024

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 344 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 397

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 398 TLMWGMLNRKAQVTGSTLNGRKEK 421


>gi|151943040|gb|EDN61375.1| SNF2-like protein [Saccharomyces cerevisiae YJM789]
          Length = 1359

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|119632034|gb|EAX11629.1| zinc finger, RAN-binding domain containing 3, isoform CRA_a [Homo
           sapiens]
          Length = 1030

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 344 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 397

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 398 TLMWGMLNRKAQVTGSTLNGRKEK 421


>gi|119632040|gb|EAX11635.1| zinc finger, RAN-binding domain containing 3, isoform CRA_f [Homo
           sapiens]
          Length = 1017

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 339 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 392

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 393 TLMWGMLNRKAQVTGSTLNGRKEK 416


>gi|109104419|ref|XP_001101449.1| PREDICTED: zinc finger Ran-binding domain-containing protein
           3-like, partial [Macaca mulatta]
          Length = 958

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 279 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 332

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 333 TLMWGMLNRKAQVTGSTLNGRKEK 356


>gi|34559250|gb|AAQ75381.1| global transcription activator Snf2p [Pichia angusta]
          Length = 1461

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++I+
Sbjct: 999  AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSDSIE 1052

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R   K  I   ++ A K
Sbjct: 1053 EYILERAHQKLDIDGKVIQAGK 1074


>gi|50549971|ref|XP_502458.1| YALI0D05775p [Yarrowia lipolytica]
 gi|49648326|emb|CAG80646.1| YALI0D05775p [Yarrowia lipolytica]
          Length = 990

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 99  CTIQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVT 154
             I E+N EG    +F      G  G+NL     ++++ S W    + Q M    RIG T
Sbjct: 460 AAIDEYNAEGSEKFVFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQT 519

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +Q        V+V+  + +N ++E VL+R   K  +  L++
Sbjct: 520 KQ--------VYVFRFVTENAVEEKVLERAAQKLRLDQLVI 552


>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1406

 Score = 35.0 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N+   K  +  A   +C  G++L     +++   +W         +ER  ++R  +
Sbjct: 1259 INEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW------NPAVERQAISRAYR 1312

Query: 159  AGFKRAVFVYYLIAQNT 175
             G +R V+ Y+L+A+ T
Sbjct: 1313 IGQQRIVYTYHLVAKGT 1329


>gi|254568488|ref|XP_002491354.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|238031151|emb|CAY69074.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|328352132|emb|CCA38531.1| Putative DNA helicase ino80 [Pichia pastoris CBS 7435]
          Length = 1140

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL L     +++    W    E Q M       R  + G  R VFVY ++ +NT+++ +L
Sbjct: 1049 GLTLTCASRVIIMDPFWNPYVEDQAM------DRAHRIGQLREVFVYRMLIKNTVEDRIL 1102

Query: 182  QRLRTKSTIQDLLLNALKKETIHV 205
                TK   ++++ NAL  ++++ 
Sbjct: 1103 TIQNTK---REIVENALDNQSLNT 1123


>gi|322711493|gb|EFZ03066.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1025

 Score = 35.0 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E+N    IP+      + G G+NL     +++F     D  ++ Q  +     R  + 
Sbjct: 907  IDEFNGNANIPVFLLTTGAGGTGINLTAANKVIIF-----DQSDNPQD-DIQAENRAHRL 960

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G KR V V  LIA  TI+ELV +  + K  + + +  AL+
Sbjct: 961  GQKRDVEVVRLIASQTIEELVYKACQKKIELANKVTGALE 1000


>gi|222476088|ref|YP_002564609.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454459|gb|ACM58723.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 969

 Score = 35.0 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           E+N G+  LLFA  A+   G++LQ+  +I+V + L W+    +Q   RIG  R  + G +
Sbjct: 529 EFNHGQSRLLFATDAA-SEGIDLQHSCHIMVNYELPWNPNRLEQ---RIG--RLHRYGQE 582

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
           + V V+    ++T +  V + L+ K
Sbjct: 583 KEVTVWNFSFEDTRESKVFEMLQDK 607


>gi|117646914|emb|CAL37572.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 35.0 bits (79), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 TLMWGMLNRKAQVTGSTLNGRKEK 476


>gi|296417472|ref|XP_002838381.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634311|emb|CAZ82572.1| unnamed protein product [Tuber melanosporum]
          Length = 1069

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 91  GRTLDKDPCT-IQEWNE-GKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQM 147
           G T  +D  T I E+N+ G    +F      G  G+NL    +I+V +   W+ +   Q 
Sbjct: 472 GSTAHEDRITAIDEYNKPGSEKFIFLLTTRAGGLGINLTTA-DIVVLYDSDWNPQADLQA 530

Query: 148 IER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++R   IG T+Q        V V+  + +N I+E VL+R   K  +  L++
Sbjct: 531 MDRAHRIGQTKQ--------VMVFRFVTENAIEEKVLERAAQKLRLDQLVI 573


>gi|254582288|ref|XP_002497129.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
 gi|238940021|emb|CAR28196.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
          Length = 810

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M       R  + G    V VY L   NT++
Sbjct: 639 AAGLGINLAAADTVVLFDSDWNPQVDLQAM------DRCHRIGQTNPVIVYRLCCDNTVE 692

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R  +K  ++ L++     N LKK
Sbjct: 693 HVILTRATSKRRLEKLVIQMGQFNTLKK 720


>gi|156098278|ref|XP_001615171.1| helicase [Plasmodium vivax SaI-1]
 gi|148804045|gb|EDL45444.1| helicase, putative [Plasmodium vivax]
          Length = 1399

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 91  GRTL-DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G T+ D+    I ++NE   K  +      + G G+NL     +++F S      ++   
Sbjct: 669 GSTVGDERQIRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDS------DYNPQ 722

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++   + R  + G K+ V VY  + QN+++E +++R   K  +  L++
Sbjct: 723 MDIQAMDRAHRIGQKKKVIVYRFVTQNSVEEKIVERAAKKLKLDSLII 770


>gi|117646930|emb|CAL37580.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 TLMWGMLNRKAQVTGSTLNGRKEK 476


>gi|118343651|ref|NP_001071646.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975391|gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975393|gb|AAO61782.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1786

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 850 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKASVEED 903

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 904 ILERAKKKMVLDHLVIQRM 922


>gi|12855912|dbj|BAB30499.1| unnamed protein product [Mus musculus]
          Length = 530

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 403 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDR-----AHRIGQCSSVNIHYLIANGTLD 456

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 457 SLMWAMLNRKAQVTGSTLNGRKEK 480


>gi|253573733|ref|ZP_04851076.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
 gi|251847261|gb|EES75266.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
          Length = 1111

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  L      + G GLNL     + + + LWW+    QQ        R  + G K 
Sbjct: 1005 FNDGERDLFLISLKAGGTGLNLTGADTV-ILYDLWWNPAVEQQ-----AADRAYRIGQKN 1058

Query: 164  AVFVYYLIAQNTIDE 178
             V V  ++AQ T+++
Sbjct: 1059 IVHVIRMVAQGTVED 1073


>gi|242051170|ref|XP_002463329.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
 gi|241926706|gb|EER99850.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
          Length = 1685

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 944  AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQETVNIYRFVTCKSVE 997

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 998  EDILERAKKKMVLDHLVIQKLNAE 1021


>gi|62860046|ref|NP_115519.2| zinc finger Ran-binding domain-containing protein 3 [Homo sapiens]
 gi|74741477|sp|Q5FWF4|ZRAB3_HUMAN RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|66840172|gb|AAH89429.2| Zinc finger, RAN-binding domain containing 3 [Homo sapiens]
          Length = 1079

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 TLMWGMLNRKAQVTGSTLNGRKEK 476


>gi|50310529|ref|XP_455284.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644420|emb|CAG97992.1| KLLA0F04521p [Kluyveromyces lactis]
          Length = 1344

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +       R  + G K  V +  LI  ++++
Sbjct: 912 AGGLGLNLQTADTVIIFDTDW---NPHQDL---QAQDRAHRIGQKNEVRILRLITTDSVE 965

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 966 EVILERAMQKLDIDGKVIQAGK 987


>gi|58258561|ref|XP_566693.1| DNA repair protein RAD5 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|74687780|sp|Q5KPG8|RAD5_CRYNE RecName: Full=DNA repair protein RAD5
 gi|57222830|gb|AAW40874.1| DNA repair protein RAD5, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1198

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    QQ I+R+      + G  + V+V   I + T+++ 
Sbjct: 1099 GVGLNLTMA-NYVFLMDTWWNEAIEQQAIDRV-----HRLGQNKPVYVTRYIIKGTVEKR 1152

Query: 180  VLQRLRTKSTIQDLLLN--ALKKET 202
            +++  R+K+ + +  L+  A  KET
Sbjct: 1153 IMKIQRSKTALVNASLSNGAKTKET 1177


>gi|163942929|ref|YP_001647813.1| non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865126|gb|ABY46185.1| Non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 918

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 810 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 864 QKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|311272141|ref|XP_003133319.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
           domain-containing protein 3-like [Sus scrofa]
          Length = 1044

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           KDP       E ++ +L    A  G GL      ++ VF  L+WD    +Q  +R     
Sbjct: 376 KDP-------ETRVAILSIQAA--GQGLTFTAATHV-VFAELYWDPGHIKQAEDRA---- 421

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 422 -HRIGQCSSVNIHYLIANGTLDTLMWAMLNRKAQVTGSTLNGRKEK 466


>gi|315048263|ref|XP_003173506.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
 gi|311341473|gb|EFR00676.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
          Length = 1358

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 927  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 980

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 981  ERILERAQFKLDMDGKVIQAGK 1002


>gi|169620543|ref|XP_001803683.1| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
 gi|160704055|gb|EAT79355.2| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
          Length = 900

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W   ++ Q M       R  + G  R V VY    +NT+++ 
Sbjct: 735 GQGINLAAADTVILFDSDWNPQQDLQAM------DRAHRIGQTRNVIVYRFATRNTVEQK 788

Query: 180 VLQRLRTKSTIQDLLL 195
           +L+    K  ++ L++
Sbjct: 789 LLESAEAKRRLEKLVI 804


>gi|320581785|gb|EFW96004.1| global transcription activator Snf2p [Pichia angusta DL-1]
          Length = 1461

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++I+
Sbjct: 999  AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSDSIE 1052

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R   K  I   ++ A K
Sbjct: 1053 EYILERAHQKLDIDGKVIQAGK 1074


>gi|258572078|ref|XP_002544816.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
 gi|237905086|gb|EEP79487.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
          Length = 1435

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 956  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 1009

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 1010 ERILERAQFKLDMDGKVIQAGK 1031


>gi|151940802|gb|EDN59189.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 853

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|326435151|gb|EGD80721.1| serine/threonine protein kinase [Salpingoeca sp. ATCC 50818]
          Length = 4337

 Score = 34.7 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL +  N ++ F + W+     Q I     TR  + G K  V VY L+A+ T+++ + 
Sbjct: 3877 GINL-HSANRVILFDVDWNPASDNQAI-----TRAHRYGQKLPVVVYRLVARGTLEQRIY 3930

Query: 182  QRLRTKSTIQDLLLN 196
            ++  TK  +   L++
Sbjct: 3931 EKQVTKEVLSQRLVD 3945


>gi|259147128|emb|CAY80381.1| Sth1p [Saccharomyces cerevisiae EC1118]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|190406337|gb|EDV09604.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|115473863|ref|NP_001060530.1| Os07g0660200 [Oryza sativa Japonica Group]
 gi|113612066|dbj|BAF22444.1| Os07g0660200 [Oryza sativa Japonica Group]
          Length = 631

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 81  AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQETVNIYRFVTCKSVE 134

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +L+R + K  +  L++  L  E
Sbjct: 135 EDILERAKKKMVLDHLVIQKLNAE 158


>gi|134106523|ref|XP_778272.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50260975|gb|EAL23625.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1198

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    QQ I+R+      + G  + V+V   I + T+++ 
Sbjct: 1099 GVGLNLTMA-NYVFLMDTWWNEAIEQQAIDRV-----HRLGQNKPVYVTRYIIKGTVEKR 1152

Query: 180  VLQRLRTKSTIQDLLLN--ALKKET 202
            +++  R+K+ + +  L+  A  KET
Sbjct: 1153 IMKIQRSKTALVNASLSNGAKTKET 1177


>gi|302658563|ref|XP_003020983.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
 gi|291184858|gb|EFE40365.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
          Length = 1362

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 931  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 984

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 985  ERILERAQFKLDMDGKVIQAGK 1006


>gi|256269545|gb|EEU04829.1| Sth1p [Saccharomyces cerevisiae JAY291]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|6322065|ref|NP_012140.1| Sth1p [Saccharomyces cerevisiae S288c]
 gi|417373|sp|P32597|STH1_YEAST RecName: Full=Nuclear protein STH1/NPS1; AltName:
           Full=ATP-dependent helicase STH1; AltName:
           Full=Chromatin structure-remodeling complex protein
           STH1; AltName: Full=SNF2 homolog
 gi|218449|dbj|BAA01446.1| nuclear protein [Saccharomyces cerevisiae]
 gi|599991|emb|CAA86866.1| nuclear protein [Saccharomyces cerevisiae]
 gi|285812528|tpg|DAA08427.1| TPA: Sth1p [Saccharomyces cerevisiae S288c]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|47211143|emb|CAF96563.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1919

 Score = 34.7 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G KR V +Y L+ + +++E 
Sbjct: 895 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKRQVNIYRLVTKGSVEED 948

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 949 IIERAKKKMVLDHLVIQRM 967


>gi|323348194|gb|EGA82445.1| Sth1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|254569936|ref|XP_002492078.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|238031875|emb|CAY69798.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|328351432|emb|CCA37831.1| ATP-dependent helicase STH1/SNF2 [Pichia pastoris CBS 7435]
          Length = 1239

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 864 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 917

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 918 EVILERAHQKLDIDGKVIQAGK 939


>gi|150866895|ref|XP_001386641.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
 gi|149388151|gb|ABN68612.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
          Length = 1259

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 877 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITNDSVE 930

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 931 EVILERAHQKLDIDGKVIQAGK 952


>gi|172764|gb|AAA35120.1| STH1 protein [Saccharomyces cerevisiae]
          Length = 1352

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|326479975|gb|EGE03985.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Trichophyton equinum CBS 127.97]
          Length = 1352

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 921 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 974

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R + K  +   ++ A K
Sbjct: 975 ERILERAQFKLDMDGKVIQAGK 996


>gi|300121515|emb|CBK22034.2| unnamed protein product [Blastocystis hominis]
          Length = 508

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKC---LQLANGA--VYYDEEKHWKEVHDEKI 56
           K+ ++F+R  +CDL         S S+  +     QL +    VY ++      + DE I
Sbjct: 284 KELYRFER--WCDLGMTLSARLMSTSRNFRMQILRQLVSHPYNVYEEKSSSGSYITDESI 341

Query: 57  -----------KALEVIIEKANAAPIIVAY----HFNSDLARL---QKAFPQGRTL--DK 96
                        L+V+I K +   + V +    H   D       +     G TL  D+
Sbjct: 342 IQKSSKLTLLDNLLKVLIPKGHRVLVFVQFVETLHLLEDYCTFRGYENCSIHGSTLQSDR 401

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D       +   IP+      S G G+NL     ++++ S W   ++ Q M       R 
Sbjct: 402 DQEIKDFQSREDIPIFLLTTRSGGLGINLSAADTVILYDSDWNPQQDIQAM------DRA 455

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + G KR V VY  +   T+D  +L+
Sbjct: 456 HRLGQKRDVVVYRFVTLGTMDVQLLK 481


>gi|229008128|ref|ZP_04165659.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
 gi|228753134|gb|EEM02641.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
          Length = 867

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 759 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 812

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++   ++ +
Sbjct: 813 QKRFVHVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|222637616|gb|EEE67748.1| hypothetical protein OsJ_25446 [Oryza sativa Japonica Group]
          Length = 1734

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 990  AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQETVNIYRFVTCKSVE 1043

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1044 EDILERAKKKMVLDHLVIQKLNAE 1067


>gi|326468544|gb|EGD92553.1| SNF2 family ATP dependent chromatin remodeling factor snf21
           [Trichophyton tonsurans CBS 112818]
          Length = 1352

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 921 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 974

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R + K  +   ++ A K
Sbjct: 975 ERILERAQFKLDMDGKVIQAGK 996


>gi|302510453|ref|XP_003017178.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
 gi|291180749|gb|EFE36533.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
          Length = 1405

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 974  AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 1027

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L+R + K  +   ++ A K
Sbjct: 1028 ERILERAQFKLDMDGKVIQAGK 1049


>gi|228994365|ref|ZP_04154249.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
 gi|228765382|gb|EEM14052.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
          Length = 867

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 759 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 812

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++   ++ +
Sbjct: 813 QKRFVHVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|228999987|ref|ZP_04159559.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
 gi|228759929|gb|EEM08903.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
          Length = 867

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 759 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 812

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++   ++ +
Sbjct: 813 QKRFVHVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|218200191|gb|EEC82618.1| hypothetical protein OsI_27196 [Oryza sativa Indica Group]
          Length = 1734

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 990  AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQETVNIYRFVTCKSVE 1043

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1044 EDILERAKKKMVLDHLVIQKLNAE 1067


>gi|836793|dbj|BAA09277.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 778

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|212534786|ref|XP_002147549.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069948|gb|EEA24038.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1115

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 99  CTIQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N EG    +F      G  G+NL    +I+V F   W+ +   Q ++R      
Sbjct: 547 AAIDEYNKEGSDKFIFLLTTRAGGLGINLTTA-DIVVLFDSDWNPQADLQAMDRA----- 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G K+ V V+  + ++ I+E VL+R   K  +  L++
Sbjct: 601 HRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVI 639


>gi|71064092|gb|AAZ22501.1| Sth1p [Saccharomyces cerevisiae]
          Length = 1359

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 869 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 922

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 923 EVILERAMQKLDIDGKVIQAGK 944


>gi|42742173|ref|NP_116696.2| Irc5p [Saccharomyces cerevisiae S288c]
 gi|84028283|sp|P43610|IRC5_YEAST RecName: Full=Uncharacterized ATP-dependent helicase IRC5; AltName:
           Full=Increased recombination centers protein 5
 gi|285811936|tpg|DAA12481.1| TPA: Irc5p [Saccharomyces cerevisiae S288c]
          Length = 853

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|186686080|ref|YP_001869276.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186468532|gb|ACC84333.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A++TI+E 
Sbjct: 1313 GTGLNLT-AADYVIHTDPWWN-----PAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEEK 1366

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +++    K  + D LL  
Sbjct: 1367 IVELHHHKRDLADSLLEG 1384


>gi|297741672|emb|CBI32804.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K  +L A   + G G+NL     + +    WW+    +Q ++R+      + G K  V +
Sbjct: 710 KAAVLLASLKASGAGINLTAASRVYLL-EPWWNPAVEEQAMDRV-----HRIGQKEDVKI 763

Query: 168 YYLIAQNTIDELVLQ 182
             LIA+N+I+E +L+
Sbjct: 764 VRLIARNSIEERILE 778


>gi|238624120|ref|NP_001121770.2| chromodomain helicase DNA binding protein 1 [Danio rerio]
          Length = 1693

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 855 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEEE 908

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 909 IIERAKKKMVLDHLVIQRM 927


>gi|327300573|ref|XP_003234979.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
 gi|326462331|gb|EGD87784.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
          Length = 1352

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI+ N+++
Sbjct: 921 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLISSNSVE 974

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R + K  +   ++ A K
Sbjct: 975 ERILERAQFKLDMDGKVIQAGK 996


>gi|83286649|ref|XP_730253.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489925|gb|EAA21818.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 1350

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 91  GRTL-DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G T+ D+    I ++NE   K  +      + G G+NL     +++F S      ++   
Sbjct: 596 GSTVGDERQIRINKFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDS------DYNPQ 649

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++   + R  + G K+ V VY  + QN+++E +++R   K  +  L++
Sbjct: 650 MDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLII 697


>gi|255710645|ref|XP_002551606.1| KLTH0A03410p [Lachancea thermotolerans]
 gi|238932983|emb|CAR21164.1| KLTH0A03410p [Lachancea thermotolerans]
          Length = 806

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W         ++   + R  + G  + V VY L   NT++ +
Sbjct: 641 GLGINLTAADTVVLFDSDW------NPQVDLQAMDRTHRIGQTKPVIVYRLCCDNTVEHV 694

Query: 180 VLQRLRTKSTIQDLLL 195
           +L R  +K  ++ +++
Sbjct: 695 ILTRAASKRKLEKMVI 710


>gi|300175571|emb|CBK20882.2| unnamed protein product [Blastocystis hominis]
          Length = 571

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLN+     +++    W         I+   + R  + G  R VFVY L    +I+E+
Sbjct: 413 GVGLNITGASRVVMLEPAW------NPAIDLQSIARAWRFGQTRRVFVYRLFVAGSIEEV 466

Query: 180 VLQRLRTKSTIQDLLLN 196
           +LQR   K  I D+ ++
Sbjct: 467 MLQRQLLKKAIADVAVD 483


>gi|251797976|ref|YP_003012707.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247545602|gb|ACT02621.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 589

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  +L A  A  G G+NLQ+  N ++ F L W+    +Q I R+      + G K  V 
Sbjct: 429 GRAQVLIATEAG-GEGINLQFCHN-MINFDLPWNPMRVEQRIGRV-----HRLGQKEDVK 481

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +Y L    TI+E ++  L  K  + +L++  L
Sbjct: 482 IYNLCTLGTIEEHIVNLLHEKINLFELVIGEL 513


>gi|190406613|gb|EDV09880.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 853

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|207345617|gb|EDZ72381.1| YFR038Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 853

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|168216008|ref|ZP_02641633.1| putative helicase [Clostridium perfringens NCTC 8239]
 gi|182381656|gb|EDT79135.1| putative helicase [Clostridium perfringens NCTC 8239]
          Length = 1065

 Score = 34.7 bits (78), Expect = 8.2,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQ 102
            K+  ++ I++ A+ +   I++   F S L ++++ F +         G T  KD    ++
Sbjct: 895  KLTVVKEIVKDASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVK 954

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++NE   I +      + G GLNL    ++++ F  WW+       +E     R  + G 
Sbjct: 955  KFNEDSNIKVFLISLKAGGVGLNLT-SASVVIHFDPWWN-----PAVEDQATDRAHRFGQ 1008

Query: 162  KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
            +  V V  L+A++TI+E +VL +   +  IQ L+
Sbjct: 1009 ENKVEVIKLVAKDTIEEKIVLMQEDKRELIQSLM 1042


>gi|311742523|ref|ZP_07716332.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311314151|gb|EFQ84059.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 710

 Score = 34.7 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           ++ G GLNL    NI V   L W   E  Q I+R+      + G +  V  + +IA  TI
Sbjct: 607 SAAGVGLNLHVASNI-VLAELSWTDAEQTQAIDRV-----HRIGQEEPVTAWRIIAAQTI 660

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           D  +++ + +K+ +    L+   +E
Sbjct: 661 DTKIVELIDSKAGLAARALDGSDEE 685


>gi|256268827|gb|EEU04181.1| Irc5p [Saccharomyces cerevisiae JAY291]
          Length = 853

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL  G + +V F   W+ +   Q ++R       + G +  V VY L   NTI+
Sbjct: 681 AAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----HRIGQESPVIVYRLCCDNTIE 734

Query: 178 ELVLQRLRTKSTIQDLLL-----NALKK 200
            ++L R   K  ++ +++     N LKK
Sbjct: 735 HVILTRAANKRNLERMVIQMGKFNNLKK 762


>gi|169343905|ref|ZP_02864901.1| putative helicase [Clostridium perfringens C str. JGS1495]
 gi|169298025|gb|EDS80116.1| putative helicase [Clostridium perfringens C str. JGS1495]
          Length = 1065

 Score = 34.7 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQ 102
            K+  ++ I++ A+ +   I++   F S L ++++ F +         G T  KD    ++
Sbjct: 895  KLTVVKEIVKDASESGKKILLFSQFTSVLKKIEEDFKKEDISYLYLDGGTSAKDRVERVK 954

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +NE   I +      + G GLNL    ++++ F  WW+       +E     R  + G 
Sbjct: 955  RFNEDSNIKVFLISLKAGGVGLNLT-SASVVIHFDPWWN-----PAVEEQATDRAHRFGQ 1008

Query: 162  KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
            +  V V  L+A++TI+E +VL +   +  IQ L+
Sbjct: 1009 ENKVEVIKLVAKDTIEEKIVLMQEDKRELIQSLM 1042


>gi|229087719|ref|ZP_04219842.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
 gi|228695554|gb|EEL48416.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
          Length = 858

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+++  G   +      + G GLNL    N ++ +  WW+       +E     R  + G
Sbjct: 750 IEQFQNGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWN-----PAVENQATDRAYRIG 803

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR V V+ LI   T++E + + L  K ++   ++ +
Sbjct: 804 QKRFVHVHKLITTGTLEEKIDEMLERKQSLSSAIITS 840


>gi|207344407|gb|EDZ71563.1| YIL126Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1358

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  ++++
Sbjct: 868 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITTDSVE 921

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E++L+R   K  I   ++ A K
Sbjct: 922 EVILERAMQKLDIDGKVIQAGK 943


>gi|296204912|ref|XP_002749531.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
           [Callithrix jacchus]
          Length = 1080

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 399 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDRA-----HRIGQCSSVNIHYLIANGTLD 452

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 453 TLMWGMLNRKAQVTGSTLNGRKEK 476


>gi|171913352|ref|ZP_02928822.1| Non-specific serine/threonine protein kinase [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1140

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++ +  WW+       +E   + R  + G  + V  Y L+A+N+I+
Sbjct: 1041 AGGSGLNL-TAASYVILYDPWWN-----PAVENQAIDRAHRIGQTQPVMAYRLLAKNSIE 1094

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E +    + KS +   +L 
Sbjct: 1095 EKIRHLQQQKSLLSSDVLG 1113


>gi|26340418|dbj|BAC33872.1| unnamed protein product [Mus musculus]
          Length = 1081

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 866 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 919

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 920 ILERAKKKMVLDHLVIQRM 938


>gi|297622033|ref|YP_003710170.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377334|gb|ADI39164.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
          Length = 868

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 17/150 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNE 106
           I  +E I E+   A  ++   F S L+ ++K+         +  G+T ++         +
Sbjct: 706 IADMETIKEEGKKA--LIFSQFTSMLSIIKKSCSKEGWKFCYLDGQTKERKEQVDHFQTD 763

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +IP       + G GLNL     +L+F   WW+       +ER  + R  + G K  V 
Sbjct: 764 PEIPFFLISLKAGGVGLNLTAADYVLLF-DPWWN-----PAVERQAIDRAHRIGRKDTVI 817

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +  ++I+E +L     K  + D LL+
Sbjct: 818 AKRYLCLDSIEEKMLHLNTAKQHLADQLLD 847


>gi|302839537|ref|XP_002951325.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
 gi|300263300|gb|EFJ47501.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
          Length = 192

 Score = 34.7 bits (78), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 11/87 (12%)

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE---EHQQMIERIGVTRQ 156
           +Q +N + KI +      S G G+NL  G + ++F+   W+     + Q    RIG TR+
Sbjct: 96  MQRFNTDPKIFVFILSTRSGGVGINLT-GADTVIFYDSDWNPAMDAQAQDRCHRIGQTRE 154

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQR 183
                   V +Y L+++NTI+E +L++
Sbjct: 155 V------CVHIYRLVSENTIEENILRK 175


>gi|17232392|ref|NP_488940.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
 gi|17134038|dbj|BAB76599.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
          Length = 869

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + ++    WW+       +E     R  + G +R V +Y L+A++TI+E 
Sbjct: 779 GTGLNLT-AADYVIHTDPWWN-----PAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEEK 832

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +++    K  + D LL  
Sbjct: 833 IVELHHHKRDLADSLLEG 850


>gi|321455028|gb|EFX66174.1| hypothetical protein DAPPUDRAFT_332470 [Daphnia pulex]
          Length = 358

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 103 EWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            WN    IP LF      G  G+NL     +++F + W      Q +     V R  Q  
Sbjct: 255 SWNGSAHIPRLFLISTKAGGVGINLVAANRVILFDTSW---NPSQDVPSIFCVYRLGQT- 310

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             +  FVY  IAQ TI+E +  R  TK ++ 
Sbjct: 311 --KPCFVYRFIAQGTIEEKIYDRQVTKQSLS 339


>gi|242791140|ref|XP_002481699.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|242791145|ref|XP_002481700.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718287|gb|EED17707.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718288|gb|EED17708.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1118

 Score = 34.7 bits (78), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 99  CTIQEWN-EGKIPLLFAHPASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N EG    +F      G  G+NL    +I+V F   W+ +   Q ++R      
Sbjct: 547 AAIDEYNREGSDKFIFLLTTRAGGLGINLTTA-DIVVLFDSDWNPQADLQAMDRA----- 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G K+ V V+  + ++ I+E VL+R   K  +  L++
Sbjct: 601 HRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVI 639


>gi|145207323|gb|AAH78216.2| Zranb3 protein [Danio rerio]
          Length = 541

 Score = 34.7 bits (78), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWD---LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           + G GL      ++ VF  L+W+   +++ +    RIG T          V ++YLIA+ 
Sbjct: 396 AAGQGLTFTAASHV-VFAELYWNPGHIKQAEDRAHRIGQTA--------TVHIHYLIAKG 446

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T D ++   L  K T+    LN  K+
Sbjct: 447 TFDTVMWAMLNRKETVTGSALNGKKE 472


>gi|253583434|ref|ZP_04860632.1| non-specific serine/threonine protein kinase [Fusobacterium varium
           ATCC 27725]
 gi|251834006|gb|EES62569.1| non-specific serine/threonine protein kinase [Fusobacterium varium
           ATCC 27725]
          Length = 1022

 Score = 34.7 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +N G+  +      + G GLNL  G + ++ F  WW+       +E     R  + G
Sbjct: 912 VERFNSGEGDIFIISLKAGGSGLNLT-GADTVIHFDPWWN-----SSVENQATDRAYRMG 965

Query: 161 FKRAVFVYYLIAQNTIDELV 180
             + V V+ +IA+ TI+E +
Sbjct: 966 QTKNVNVFKMIAKGTIEEKI 985


>gi|115334572|dbj|BAF33276.1| chromodomain helicase DNA binding protein 1 [Eudromia elegans]
          Length = 301

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 59  GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGSVEED 112

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 113 ILERAKKKMVLDHLVIQRM 131


>gi|240103680|ref|YP_002959989.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
 gi|239911234|gb|ACS34125.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
          Length = 1100

 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ+  ++L+ + + W+    +Q I R+      + G +  V ++  +A+NT +
Sbjct: 543 AAGEGINLQFC-HLLINYDIPWNPNRLEQRIGRV-----HRYGQRYPVHIFNFVARNTRE 596

Query: 178 ELVLQRL 184
            +VL+RL
Sbjct: 597 GMVLERL 603


>gi|154340309|ref|XP_001566111.1| DNA repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063430|emb|CAM39609.1| putative DNA repair protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 736

 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I ++ A   + G GLNL    +++V    WW+       IE   V R  + G K+ V+V 
Sbjct: 574 IKIVLASKTATGVGLNLTAANHVIVV-DPWWN-----PAIEEQAVHRCYRIGQKKPVYVT 627

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I  +TI++   +  + K    D +L A
Sbjct: 628 RFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|196044225|ref|ZP_03111461.1| helicase domain protein [Bacillus cereus 03BB108]
 gi|196024864|gb|EDX63535.1| helicase domain protein [Bacillus cereus 03BB108]
          Length = 1066

 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G  +NLQ+  N ++ + + W+  + +Q + RI      + G K  VFV+ L+AQNT +  
Sbjct: 547 GESINLQFC-NQMINYDIPWNPNKLEQRMGRI-----HRIGQKNEVFVFNLVAQNTREGS 600

Query: 180 VLQRLRTK 187
           V+ +L  K
Sbjct: 601 VMTKLLDK 608


>gi|50303907|ref|XP_451901.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641033|emb|CAH02294.1| KLLA0B08327p [Kluyveromyces lactis]
          Length = 1534

 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNLQ    +++F + W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 1083 AGGLGLNLQTADTVIIFDTDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITDNSVE 1136

Query: 178  ELVLQRLRTKSTIQDLLLNALK 199
            E +L +   K  I   ++ A K
Sbjct: 1137 EAILDKAHAKLDIDGKVIQAGK 1158


>gi|71033631|ref|XP_766457.1| DNA-dependent ATPase [Theileria parva strain Muguga]
 gi|68353414|gb|EAN34174.1| DNA-dependent ATPase, putative [Theileria parva]
          Length = 1253

 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E K+ +      + G G+NL     ++++ S W         ++   + R  + G  + V
Sbjct: 582 ESKVNIFLLSTRAGGLGINLATADVVILYDSDW------NPQVDLQAIDRAHRIGQLKPV 635

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
           +VY L+ Q TI+E +++R   K
Sbjct: 636 YVYRLVHQYTIEEKIIERATLK 657


>gi|328869121|gb|EGG17499.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1301

 Score = 34.3 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL     +L+F   W         ++   V R  + G KR V VY LI   TI+E + 
Sbjct: 933  GLNLTSADRVLIFDPSW-------TTVDNQAVDRVYRIGQKRDVVVYRLITCGTIEEKIY 985

Query: 182  QRLRTKSTIQDLLLNALKKE 201
            ++   K ++   +LN  K +
Sbjct: 986  RKQVFKGSLMKSMLNQDKGQ 1005


>gi|326500828|dbj|BAJ95080.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1731

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL     +++F S W    + Q M      +R  + G +  V +Y  +   +++
Sbjct: 991  AGGLGINLATADTVIIFDSDWNPQNDLQAM------SRAHRIGQQDTVNIYRFVTCKSVE 1044

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +L+R + K  +  L++  L  E
Sbjct: 1045 EDILERAKKKMVLDHLVIQKLNAE 1068


>gi|115334540|dbj|BAF33260.1| chromodomain helicase DNA binding protein 1 [Struthio camelus]
          Length = 301

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++
Sbjct: 54  AGGLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGSVE 107

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E +L+R + K  +  L++  +
Sbjct: 108 EDILERAKKKMVLDHLVIQRM 128


>gi|311030891|ref|ZP_07708981.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 565

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++E  +  + +L A  A  G G+NLQ+  +I + F L W+    +Q I RI      + G
Sbjct: 416 MRELFKNHVQVLIATEAG-GEGINLQFCNHI-INFDLPWNPMRLEQRIGRI-----HRLG 468

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +R V +Y     NT++E +L+ L  K  + + ++  L
Sbjct: 469 QERDVNIYNFATNNTVEEHILKLLYEKINLFERVIGEL 506


>gi|221480872|gb|EEE19293.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           GT1]
 gi|221501605|gb|EEE27375.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           VEG]
          Length = 1200

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           IP+      + G G+NL     ++++ S W    + Q M       R  + G K AV VY
Sbjct: 656 IPIFLLSTRAGGLGINLATADTVILYDSDWNPQVDLQAM------DRVHRIGQKSAVNVY 709

Query: 169 YLIAQNTIDELVLQR 183
            L+ ++TI++ +++R
Sbjct: 710 RLVHEHTIEQKIIER 724


>gi|168052769|ref|XP_001778812.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162669818|gb|EDQ56398.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2126

 Score = 34.3 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 32/48 (66%)

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            R  + G +  V VY LI + +++E +++R R K  +++L++++ +K+T
Sbjct: 1285 RAHRIGQENVVLVYQLITKCSVEEKIIERSRQKLAMENLVMSSSEKDT 1332


>gi|119632037|gb|EAX11632.1| zinc finger, RAN-binding domain containing 3, isoform CRA_d [Homo
           sapiens]
          Length = 458

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL      ++ VF  L+WD    +Q  +R       + G   +V ++YLIA  T+D
Sbjct: 344 AAGQGLTFTAASHV-VFAELYWDPGHIKQAEDR-----AHRIGQCSSVNIHYLIANGTLD 397

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
            L+   L  K+ +    LN  K++
Sbjct: 398 TLMWGMLNRKAQVTGSTLNGRKEK 421


>gi|115472213|ref|NP_001059705.1| Os07g0497000 [Oryza sativa Japonica Group]
 gi|113611241|dbj|BAF21619.1| Os07g0497000 [Oryza sativa Japonica Group]
          Length = 622

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 101 IQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N+ K   +F     SCG G+NL     ++++ S   D   H  +     + R  + 
Sbjct: 351 IARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS---DFNPHADI---QAMNRAHRI 404

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G    + VY L+ + +++E +L   + K  +  L +N
Sbjct: 405 GQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVN 441


>gi|5917757|gb|AAD56025.1|AF181828_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
          Length = 918

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 490 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGSVEED 543

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 544 ILERAKKKMVLDHLVIQRM 562


>gi|301607806|ref|XP_002933489.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 1708

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 779 GLGINLASADTVVIFDSDWNPQNDLQ------AQARAHRIGQKKQVNIYRLVTKGSVEED 832

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +++R + K  +  L++  +
Sbjct: 833 IIERAKKKMVLDHLVIQRM 851


>gi|237844775|ref|XP_002371685.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
 gi|211969349|gb|EEB04545.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
          Length = 1249

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           IP+      + G G+NL     ++++ S W    + Q M       R  + G K AV VY
Sbjct: 705 IPIFLLSTRAGGLGINLATADTVILYDSDWNPQVDLQAM------DRVHRIGQKSAVNVY 758

Query: 169 YLIAQNTIDELVLQR 183
            L+ ++TI++ +++R
Sbjct: 759 RLVHEHTIEQKIIER 773


>gi|168212253|ref|ZP_02637878.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170716039|gb|EDT28221.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 1067

 Score = 34.3 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQ 102
            K+  ++ I++ A+ +   I++   F S L ++++ F +         G T  KD    ++
Sbjct: 897  KLTVVKEIVKDASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVK 956

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++NE   I +      + G GLNL    ++++ F  WW+       +E     R  + G 
Sbjct: 957  KFNEDSNIKVFLISLKAGGVGLNLT-SASVVIHFDPWWN-----PAVEDQATDRAHRFGQ 1010

Query: 162  KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
            +  V V  L+A++TI+E +VL +   +  IQ L+
Sbjct: 1011 ENKVEVIKLVAKDTIEEKIVLMQEDKRELIQSLM 1044


>gi|169612371|ref|XP_001799603.1| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
 gi|160702496|gb|EAT83500.2| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
          Length = 1333

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 906 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSNSVE 959

Query: 178 ELVLQR 183
           E +L+R
Sbjct: 960 EKILER 965


>gi|110803396|ref|YP_698309.1| DNA/RNA helicase, SNF2 [Clostridium perfringens SM101]
 gi|110683897|gb|ABG87267.1| putative helicase [Clostridium perfringens SM101]
          Length = 1069

 Score = 34.3 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQ 102
            K+  ++ I++ A+ +   I++   F S L ++++ F +         G T  KD    ++
Sbjct: 899  KLTVVKEIVKDASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVK 958

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++NE   I +      + G GLNL    ++++ F  WW+       +E     R  + G 
Sbjct: 959  KFNEDSNIKVFLISLKAGGVGLNLT-SASVVIHFDPWWN-----PAVEDQATDRAHRFGQ 1012

Query: 162  KRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLL 194
            +  V V  L+A++TI+E +VL +   +  IQ L+
Sbjct: 1013 ENKVEVIKLVAKDTIEEKIVLMQEDKRELIQSLM 1046


>gi|225678325|gb|EEH16609.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb03]
          Length = 1391

 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 893 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSNSVE 946

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R + K  +   ++ A K
Sbjct: 947 ERILERAQFKLDMDGKVIQAGK 968


>gi|189190262|ref|XP_001931470.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973076|gb|EDU40575.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1273

 Score = 34.3 bits (77), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNLQ    ++++ S W     HQ +  +    R  + G K  V +  LI  N+++
Sbjct: 836 AGGLGLNLQTADTVIIYDSDW---NPHQDLQAQ---DRAHRIGQKNEVRILRLITSNSVE 889

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +L+R   K  +   ++ A K
Sbjct: 890 EKILERANYKLDMDGKVIQAGK 911


>gi|5917753|gb|AAD56021.1|AF181824_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
          Length = 918

 Score = 34.3 bits (77), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL     +++F S W    + Q         R  + G K+ V +Y L+ + +++E 
Sbjct: 490 GLGINLASADTVVIFDSDWNPQNDLQAQ------ARAHRIGQKKQVNIYRLVTKGSVEED 543

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+R + K  +  L++  +
Sbjct: 544 ILERAKKKMVLDHLVIQRM 562


Searching..................................................done


Results from round 2




>gi|317120700|gb|ADV02523.1| SNF2 Dead box helicase [Liberibacter phage SC1]
 gi|317120743|gb|ADV02565.1| SNF2 Dead box helicase [Liberibacter phage SC2]
 gi|317120804|gb|ADV02625.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  306 bits (785), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547866|gb|ACT57668.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score =  306 bits (784), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 434 LQRLRTKSTIQDLLLNALKKETIHV 458


>gi|317120757|gb|ADV02578.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 460

 Score =  306 bits (784), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 256 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 316 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 375

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 376 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 435

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 436 LQRLRTKSTIQDLLLNALKKETIHV 460


>gi|317120844|gb|ADV02665.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  306 bits (783), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 200/205 (97%), Positives = 203/205 (99%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+CD+QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 LKLYRKFQRELFCDIQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039807|gb|ACT56603.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score =  299 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205


>gi|295096884|emb|CBK85974.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 466

 Score =  294 bits (754), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/202 (57%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E++ +L G+ IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 264 QHYREMEKEMFLELNGKGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL+KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 ILTEAAGAPVLVAYHWKHDLERLRKAFPKGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA  T+DE+V+
Sbjct: 384 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIATGTMDEMVM 443

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K  +QD+LL+A+KK  I
Sbjct: 444 ERRNSKRKVQDILLDAMKKRGI 465


>gi|194429287|ref|ZP_03061814.1| dead box helicase [Escherichia coli B171]
 gi|194412695|gb|EDX28990.1| dead box helicase [Escherichia coli B171]
          Length = 464

 Score =  294 bits (752), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|323159216|gb|EFZ45206.1| DEAD box helicase [Escherichia coli E128010]
          Length = 435

 Score =  294 bits (752), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 233 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 292

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 293 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 352

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 353 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 412

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 413 ERRNSKRTVQDILLDAMKKRGI 434


>gi|260845245|ref|YP_003223023.1| putative phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
 gi|257760392|dbj|BAI31889.1| predicted phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
          Length = 464

 Score =  293 bits (751), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|191174014|ref|ZP_03035531.1| dead box helicase [Escherichia coli F11]
 gi|190905705|gb|EDV65327.1| dead box helicase [Escherichia coli F11]
 gi|324014343|gb|EGB83562.1| SNF2 domain protein [Escherichia coli MS 60-1]
          Length = 464

 Score =  293 bits (751), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|331654021|ref|ZP_08355022.1| putative protein p41 [Escherichia coli M718]
 gi|331048870|gb|EGI20946.1| putative protein p41 [Escherichia coli M718]
          Length = 465

 Score =  293 bits (751), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 263 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 322

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 323 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 382

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 383 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 442

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 443 ERRNSKRTVQDILLDAMKKRGI 464


>gi|212712312|ref|ZP_03320440.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
 gi|212685058|gb|EEB44586.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
          Length = 463

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/200 (61%), Positives = 163/200 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + ++E++ +L+ E +EA N+A+KTVKCLQ+A+GA+Y D+ K+W E+HD KI+ALE 
Sbjct: 264 KQYQEMEKEMFLELEHEGVEALNAAAKTVKCLQIASGAIYTDDSKNWVELHDTKIQALES 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II ++   PI+VAYH+  DL RL KAFP+GR LD DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 IISESGGMPILVAYHWKHDLERLLKAFPKGRNLDADPQTLRDWNAGKIPILFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG+ R VF+++LIA  T+DE+V+
Sbjct: 384 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGYNRPVFIHHLIAAGTMDEVVM 443

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +R  +K  IQDLLL A+K++
Sbjct: 444 ERRNSKREIQDLLLEAMKRK 463


>gi|188492213|ref|ZP_02999483.1| dead box helicase [Escherichia coli 53638]
 gi|188487412|gb|EDU62515.1| dead box helicase [Escherichia coli 53638]
 gi|332088071|gb|EGI93196.1| DEAD box helicase [Shigella boydii 5216-82]
          Length = 464

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE+IEA N+A+KT KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGESIEAPNAAAKTQKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|238920126|ref|YP_002933641.1| hypothetical protein NT01EI_2232 [Edwardsiella ictaluri 93-146]
 gi|238869695|gb|ACR69406.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 433

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDTGSWSELHDAKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QDLLL+A+KK  I
Sbjct: 411 ERRNSKRTVQDLLLDAMKKRGI 432


>gi|218555139|ref|YP_002388052.1| hypothetical protein ECIAI1_2669 [Escherichia coli IAI1]
 gi|218361907|emb|CAQ99507.1| conserved hypothetical protein from bacteriophage origin
           [Escherichia coli IAI1]
          Length = 464

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|262043428|ref|ZP_06016553.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039254|gb|EEW40400.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 464

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAVDTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRDSKRTVQDILLDAMKKRGI 463


>gi|291283833|ref|YP_003500651.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763706|gb|ADD57667.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
          Length = 463

 Score =  291 bits (746), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GA+Y D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGALYTDDTGSWSELHDTKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|204927042|ref|ZP_03218244.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323707|gb|EDZ08902.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 463

 Score =  290 bits (743), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+ P T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQGPQTLRDWNAGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++I  +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIITADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|323173123|gb|EFZ58754.1| DEAD box helicase [Escherichia coli LT-68]
          Length = 433

 Score =  290 bits (742), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGYILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 411 ERRNSKRTVQDILLDAMKKRGI 432


>gi|331648305|ref|ZP_08349394.1| putative protein p41 [Escherichia coli M605]
 gi|331042854|gb|EGI14995.1| putative protein p41 [Escherichia coli M605]
          Length = 464

 Score =  290 bits (742), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS  H
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASASH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LLNA+KK  I
Sbjct: 442 ERRNSKRTVQDILLNAMKKRGI 463


>gi|82777983|ref|YP_404332.1| hypothetical protein SDY_2798 [Shigella dysenteriae Sd197]
 gi|309784630|ref|ZP_07679265.1| DEAD box helicase [Shigella dysenteriae 1617]
 gi|81242131|gb|ABB62841.1| hypothetical bacteriophage protein [Shigella dysenteriae Sd197]
 gi|308927527|gb|EFP72999.1| DEAD box helicase [Shigella dysenteriae 1617]
          Length = 311

 Score =  287 bits (735), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 109 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 168

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 169 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 228

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 229 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 288

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           ++  +K T+QD+LL+A+KK  I
Sbjct: 289 EQRNSKRTVQDILLDAMKKRGI 310


>gi|170023443|ref|YP_001719948.1| hypothetical protein YPK_1197 [Yersinia pseudotuberculosis YPIII]
 gi|169749977|gb|ACA67495.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
          Length = 463

 Score =  287 bits (734), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 121/201 (60%), Positives = 159/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +    IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 262 QYKEMEKEMFLQIGDHGIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 322 ITEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 382 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 441

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 442 RRDSKREVQDILLEAMKKRGL 462


>gi|332160953|ref|YP_004297530.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665183|gb|ADZ41827.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 432

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 120/201 (59%), Positives = 160/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 411 RRDSKREVQDILLEAMKKRGL 431


>gi|71898924|ref|ZP_00681091.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731336|gb|EAO33400.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71898992|ref|ZP_00681158.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731238|gb|EAO33303.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPETIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|330862108|emb|CBX72272.1| putative protein p41 [Yersinia enterocolitica W22703]
          Length = 432

 Score =  286 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/201 (59%), Positives = 159/201 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDL RL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLTRLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R  +K  +QD+LL A+KK  +
Sbjct: 411 RRDSKREVQDILLEAMKKRGL 431


>gi|71901323|ref|ZP_00683419.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728907|gb|EAO31042.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  286 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71902063|ref|ZP_00684103.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728174|gb|EAO30365.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71899887|ref|ZP_00682035.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71730327|gb|EAO32410.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28199029|ref|NP_779343.1| hypothetical protein PD1137 [Xylella fastidiosa Temecula1]
 gi|182681751|ref|YP_001829911.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057127|gb|AAO28992.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631861|gb|ACB92637.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307580180|gb|ADN64149.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71276270|ref|ZP_00652548.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71162878|gb|EAO12602.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  285 bits (729), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 160/202 (79%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71275472|ref|ZP_00651758.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71163772|gb|EAO13488.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|170729638|ref|YP_001775071.1| hypothetical protein Xfasm12_0427 [Xylella fastidiosa M12]
 gi|167964431|gb|ACA11441.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 472

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71900964|ref|ZP_00683077.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71729269|gb|EAO31387.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 160/202 (79%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28198299|ref|NP_778613.1| hypothetical protein PD0382 [Xylella fastidiosa Temecula1]
 gi|28199082|ref|NP_779396.1| hypothetical protein PD1194 [Xylella fastidiosa Temecula1]
 gi|182680936|ref|YP_001829096.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182681808|ref|YP_001829968.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28056369|gb|AAO28262.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|28057180|gb|AAO29045.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631046|gb|ACB91822.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182631918|gb|ACB92694.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307579404|gb|ADN63373.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28199605|ref|NP_779919.1| hypothetical protein PD1730 [Xylella fastidiosa Temecula1]
 gi|182682346|ref|YP_001830506.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057720|gb|AAO29568.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632456|gb|ACB93232.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307578627|gb|ADN62596.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|48697218|ref|YP_024948.1| putative helicase protein [Burkholderia phage BcepC6B]
 gi|47779024|gb|AAT38387.1| gp28 [Burkholderia phage BcepC6B]
          Length = 459

 Score =  284 bits (727), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 157/206 (76%), Gaps = 5/206 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           + Y   +R+++ ++    IEA N+ASKT+KCLQLANGAVY  E+       W EVHD K+
Sbjct: 252 RLYRDMERQMFMEIDDSPIEAMNAASKTMKCLQLANGAVYKQEDDGSDTAPWHEVHDLKL 311

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           +ALE I+E+A   P++VAYHF SDLARLQ+AFP+GR LD++P TI++WN GKIP++FAHP
Sbjct: 312 QALEEIVEEAAGMPVLVAYHFKSDLARLQRAFPRGRQLDQNPQTIRDWNAGKIPVMFAHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQ GGNIL  F  WW+LEE+ Q++ERIG  RQ QAG +R VF+Y +IA++TI
Sbjct: 372 ASAGHGLNLQDGGNILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTI 431

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           DE V++R  TK  +QD+LL+A+K+  
Sbjct: 432 DEDVVERRETKRAVQDILLDAMKRRA 457


>gi|71901494|ref|ZP_00683581.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728750|gb|EAO30894.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 464

 Score =  284 bits (727), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A++++
Sbjct: 437 VMARRESKREVQDLLLEAVRRK 458


>gi|273810423|ref|YP_003344894.1| helicase [Xylella phage Xfas53]
 gi|257097798|gb|ACV41104.1| helicase [Xylella phage Xfas53]
          Length = 472

 Score =  284 bits (726), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|9633588|ref|NP_051002.1| hypothetical protein APSE-1_41 [Acyrthosiphon pisum bacteriophage
           APSE-1]
 gi|9910955|sp|Q9T1Q7|VP41_BPAPS RecName: Full=Putative protein p41
 gi|6118036|gb|AAF03984.1|AF157835_41 P41 [Endosymbiont phage APSE-1]
          Length = 460

 Score =  284 bits (726), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 115/200 (57%), Positives = 159/200 (79%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE 
Sbjct: 261 AHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALES 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGH
Sbjct: 321 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 381 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +R  +K  IQDLLL A+K++
Sbjct: 441 ERRNSKRAIQDLLLEAMKRK 460


>gi|71274496|ref|ZP_00650784.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71900325|ref|ZP_00682460.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71164228|gb|EAO13942.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71729900|gb|EAO31996.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  283 bits (725), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|15837282|ref|NP_297970.1| hypothetical protein XF0680 [Xylella fastidiosa 9a5c]
 gi|9105562|gb|AAF83490.1|AE003912_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/201 (58%), Positives = 157/201 (78%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ RLQ+AFP+GR LD+ P TI++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVTRLQRAFPKGRVLDQHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ++ERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIVERIGPTRQAQAGHDRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|15839118|ref|NP_299806.1| hypothetical protein XF2528 [Xylella fastidiosa 9a5c]
 gi|9107736|gb|AAF85326.1|AE004060_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/202 (57%), Positives = 155/202 (76%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E+   L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKTMEQEMLIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LF HPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFVHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|170730331|ref|YP_001775764.1| hypothetical protein Xfasm12_1183 [Xylella fastidiosa M12]
 gi|167965124|gb|ACA12134.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 295

 Score =  281 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 80  RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 139

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 140 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 199

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 200 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 259

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 260 VMARRESKREVQDLLLEAVKRR 281


>gi|315121969|ref|YP_004062458.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495371|gb|ADR51970.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 151/200 (75%), Positives = 178/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDENHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A   P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGGCPLLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGPLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|212499736|ref|YP_002308544.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|238898727|ref|YP_002924408.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|75906050|gb|ABA29396.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|211731705|gb|ACJ10193.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|229466486|gb|ACQ68260.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 460

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 154/200 (77%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   ++EL+ +L    IEA N+A+KT+K LQ+A GA+Y D+  +W  +HD KI+ALE 
Sbjct: 261 AHYQAMEKELFLELGDSAIEALNAAAKTIKTLQIAAGAIYSDDNHNWTAIHDAKIQALES 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 321 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 381 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +R  +K  IQDLLL A+K++
Sbjct: 441 ERRNSKRAIQDLLLEAMKRK 460


>gi|41179407|ref|NP_958716.1| Bbp47 [Bordetella phage BPP-1]
 gi|45569539|ref|NP_996608.1| DEAD box helicase [Bordetella phage BMP-1]
 gi|45580790|ref|NP_996656.1| DEAD box helicase [Bordetella phage BIP-1]
 gi|40950146|gb|AAR97712.1| Bbp47 [Bordetella phage BPP-1]
          Length = 464

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 124/202 (61%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKAL 59
           + Y   +RE +  L+ G  IEAFN+ASKT+KCLQLANGA+Y D+    W +VHD K++AL
Sbjct: 261 RLYRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQAL 320

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           E I+ +A   P++VAYHF SDLARLQ+AFPQGR LD++P TI++WN GKIPLLFAHPAS 
Sbjct: 321 ESIVAEAAGMPVLVAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASA 380

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+Y+++A +T+DEL
Sbjct: 381 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDEL 440

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 441 VMARRESKREVQDLLLEAMKRR 462


>gi|315122937|ref|YP_004063426.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496339|gb|ADR52938.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/200 (75%), Positives = 179/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDESHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A  +P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGRSPVLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGTLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|313618477|gb|EFR90480.1| putative protein p41 [Listeria innocua FSL S4-378]
          Length = 450

 Score =  273 bits (699), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+ ++  +L  + I+A N+A  + K LQ+ANGAVY D E     +HD+K+ ALE 
Sbjct: 254 KVYSDFKEDMVANLGDDEIDAVNAAVLSGKLLQMANGAVY-DSENKAHVIHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++  FP  +   +    I++WN+GKIP+   HPAS GH
Sbjct: 313 LIEGANGKPVLVAYWFKHDLERIKNRFPVRKI--QSSKDIEDWNDGKIPIAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+      + G +  V V+++I +NTIDE VL
Sbjct: 371 GLNLQSGGSTLIWFGLTWSLELYQQTNARL-----YRQGQRDTVIVHHIITKNTIDEDVL 425

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L  K   QD L++A+K 
Sbjct: 426 LALTKKEKTQDALIDAVKA 444


>gi|300853544|ref|YP_003778528.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433659|gb|ADK13426.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 453

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +++L   L+GE I+A N+A+ + K  Q+ANGAVY ++ K    +HD+K+ ALE 
Sbjct: 254 KAYDGMKQDLVLSLKGEEIDAVNAAALSNKLCQMANGAVYGED-KRVFTIHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY FN DL R++K F       K    I+ WN G+I +   HPAS GH
Sbjct: 313 LIESANGKPVLVAYWFNHDLERIKKRFKVREI--KTSKDIKNWNNGEIEVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE ++
Sbjct: 371 GLNLQAGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDIM 425

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + LR K  +Q  L+ A+K +
Sbjct: 426 RALRRKEKVQSDLIAAVKAK 445


>gi|167630964|ref|YP_001681463.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
 gi|167593704|gb|ABZ85452.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
          Length = 452

 Score =  269 bits (688), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +REL   L+G+ I+A ++AS + K LQ+ANGAVY D+      +H  K+ ALE 
Sbjct: 254 KVYETMKRELVLSLEGQEIDAGSAASLSNKLLQMANGAVYADD-GSVVNIHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+E AN  P+++AY +  DL R+ K FP  R    D   I+ WN+G+IP+   HPAS GH
Sbjct: 313 ILEAANGKPVLIAYWYKHDLNRILKRFPAERLDSVDS--IRRWNDGEIPVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+      + G K  V ++++I + TIDE V+
Sbjct: 371 GLNLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHIITKGTIDEQVM 425

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + LR K   Q  L++A+K 
Sbjct: 426 KALRLKDKTQTALIDAVKA 444


>gi|298253802|ref|ZP_06977391.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
 gi|297532138|gb|EFH71111.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
          Length = 479

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 123/200 (61%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + ++   L+G+ I+A N+AS + K LQ+A GAVY +E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKADMVVSLEGKEIDAINAASLSNKLLQMAGGAVY-NEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F       K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRFNVREI--KTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+      + G    V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARLN-----RQGQTSTVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K+ +QD L+ ++K  
Sbjct: 426 RALSMKAKVQDALIESVKAR 445


>gi|323693306|ref|ZP_08107524.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502789|gb|EGB18633.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 447

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 116/198 (58%), Gaps = 7/198 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + ++EL  +L    I A N+AS T K  QLANGA+Y D      E HD K+ ALE I
Sbjct: 255 RYEELKQELVLELPDGEITAANAASLTGKLSQLANGAIYSDTGDT-IEFHDRKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL+R++K F       K    I +WN GKIP+   HPAS GHG
Sbjct: 314 IESANGKPVLVAYWFKHDLSRIKKRFDVREI--KSSKDITDWNAGKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+     RQ      V + ++I + TIDE +L+
Sbjct: 372 LNLQAGGSTLIWFGLTWSLELYQQTNARL----WRQGQTSGTVVIEHIITKGTIDERILK 427

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K   Q+ L++A+K 
Sbjct: 428 ALSKKELTQNALIDAVKA 445


>gi|297242712|ref|ZP_06926650.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
 gi|296888923|gb|EFH27657.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
          Length = 479

 Score =  268 bits (685), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 124/200 (62%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++   L+G+ I+A N+A  + K LQ+A GAVY +E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKQDMVVSLEGKEIDAINAAYLSNKLLQMAGGAVY-NEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F       K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRFNVREI--KTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+      + G    V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARLN-----RQGQTGTVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K+ +QD L++++K  
Sbjct: 426 RALSMKAKVQDALIDSVKAR 445


>gi|331085752|ref|ZP_08334835.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406675|gb|EGG86180.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 448

 Score =  268 bits (685), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 122/201 (60%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+R++   +  E ++A N+A+ + K LQ+ANGAVY ++ K    +HD K+ ALE 
Sbjct: 252 KLYQSFERDMVLSIGEEELDAANAAALSNKLLQMANGAVYGED-KKVISIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  PI+VAY +  DL R+QK  P+ R +D     I +WN G+I +   HPAS GH
Sbjct: 311 LVEAANGKPILVAYWYKHDLMRIQKRLPEARVID-TSKDITDWNHGEIAIGLIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  +V+F L W LE +QQM  R+      + G K  V +++LI + T DE V+
Sbjct: 370 GLNLQEGGCTIVWFGLTWSLELYQQMNARLW-----RQGQKHTVVIHHLITKGTHDEDVM 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K T Q  L++A++   
Sbjct: 425 KALEKKETGQSALIHAVRARI 445


>gi|313898006|ref|ZP_07831545.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312957034|gb|EFR38663.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 447

 Score =  268 bits (685), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 7/200 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + +Y + + +L  +L    I A N+AS T K  QLANGA+Y D      E HD K+ ALE
Sbjct: 253 VARYEELKSDLVLELPDGEITAANAASLTGKLSQLANGAIYSD-TGEIIEFHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE AN  P++VAY F  DL+R++K F       K    I +WN GKIP+   HPAS G
Sbjct: 312 DIIESANGKPVLVAYWFKHDLSRIKKRFDVREI--KSSKDITDWNAGKIPVAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQ   R+     RQ      V + ++I + TIDE +
Sbjct: 370 HGLNLQAGGSTLIWFGLTWSLELYQQTNARL----WRQGQTSGTVVIEHIITKGTIDERI 425

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+ L  K   Q+ L++A+K 
Sbjct: 426 LKALSKKELTQNALIDAVKA 445


>gi|42779467|ref|NP_976714.1| phage-associated helicase [Bacillus cereus ATCC 10987]
 gi|42735383|gb|AAS39322.1| phage-associated helicase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +
Sbjct: 255 VYDRFREEMVLEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++  F       K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIKAKFNVREI--KTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 427 ALRRKEKTQSDLINAVKA 444


>gi|220930213|ref|YP_002507122.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000541|gb|ACL77142.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 453

 Score =  267 bits (682), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K    +HD K+ ALE +
Sbjct: 255 VYDHFREEMVLEFGDEEIDAMNAAVLSGKLLQMANGAIY-DDDKKPHIIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++  F       K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIKAKFNVREI--KTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G K  V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHIITKGTIDEDVMG 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 427 ALKRKEKTQTDLINAVKA 444


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  266 bits (680), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/187 (59%), Positives = 152/187 (81%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH
Sbjct: 346 DEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYH 405

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS
Sbjct: 406 WKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFS 465

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+QD+LL+
Sbjct: 466 HWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDILLD 525

Query: 197 ALKKETI 203
           A+KK  I
Sbjct: 526 AMKKRGI 532


>gi|219855697|ref|YP_002472819.1| hypothetical protein CKR_2354 [Clostridium kluyveri NBRC 12016]
 gi|219569421|dbj|BAH07405.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 469

 Score =  266 bits (680), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +
Sbjct: 271 VYDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDL 329

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++  F       K    I++WN G I +   HPAS GHG
Sbjct: 330 IEGANGKPVLIAYWYNHDLERIKAKFNVREI--KTSKDIKDWNNGDISVAVIHPASAGHG 387

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 388 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 442

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 443 ALRRKEKTQSDLINAVKA 460


>gi|150391738|ref|YP_001321787.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
 gi|149951600|gb|ABR50128.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
          Length = 414

 Score =  266 bits (680), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y  F+ ++   L  E I+A N+A  + K LQ+ANGAVY DE+     +HD K+ ALE 
Sbjct: 218 AIYSGFRDDMVASLGAEEIDAVNAAVLSGKLLQMANGAVY-DEKNKAHFIHDRKLDALED 276

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P+++AY F  DL R+QK FP  +   K    I+EWNEG+IP+   HPAS GH
Sbjct: 277 LIEGANGKPVLIAYWFKHDLDRIQKRFPARQL--KSSRDIEEWNEGEIPVAVIHPASAGH 334

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+      + G K  V ++++I ++TIDE V+
Sbjct: 335 GLNLQSGGSTLVWFGLTWSLELYQQTNARL-----YRQGQKDTVVIHHIITKDTIDEDVM 389

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L  K   Q  L++A+K +
Sbjct: 390 TALTKKEKTQASLIDAVKAK 409


>gi|323484110|ref|ZP_08089480.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
 gi|323402552|gb|EGA94880.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 121/202 (59%), Gaps = 8/202 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M  YH+ ++++    +  +I+A N+A  + K +Q+ANGAVY DE    K +HD K++ALE
Sbjct: 251 MNLYHQLEKDMLVPYEDGDIDAVNAAGLSNKLMQMANGAVY-DENGAVKHIHDRKLEALE 309

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E AN  P++VAY +  DLAR++                ++WN G+IP+   HPAS G
Sbjct: 310 DLVEAANGKPVLVAYWYKHDLARIRDRLGVAEL--DAAEDFRKWNAGEIPVAVIHPASAG 367

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQM  R+      + G K  V +++LIA++T+DE V
Sbjct: 368 HGLNLQTGGSTLIWFGLTWSLELYQQMNARLW-----RQGQKETVVIHHLIAKDTLDERV 422

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           +  L  K   Q  L++A++   
Sbjct: 423 MTALEKKDCGQSALVDAVRARI 444


>gi|167039884|ref|YP_001662869.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300915304|ref|ZP_07132618.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307724792|ref|YP_003904543.1| SNF2-like protein [Thermoanaerobacter sp. X513]
 gi|166854124|gb|ABY92533.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300888580|gb|EFK83728.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307581853|gb|ADN55252.1| SNF2-related protein [Thermoanaerobacter sp. X513]
          Length = 449

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 125/200 (62%), Gaps = 8/200 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK     +R+L  +++GE + A N+A+ + K LQ+ANGAVY D+      +HD K+ ALE
Sbjct: 253 MKTLDTMKRDLITNVKGEEVTAANAAALSGKLLQMANGAVY-DDHGTVLYIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +IE AN  P+++AY F  DL+R+QK F     +     +I+ WN+G+IP+   HPAS G
Sbjct: 312 DLIEAANGKPVLIAYWFKHDLSRIQKRFE--VEVLSTSDSIKRWNDGEIPIAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ LV+F L W LE +QQ   R+      + G K  V +++LI++ TIDE V
Sbjct: 370 HGLNLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHLISKGTIDERV 424

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           ++ L  K+  Q  L++A+K 
Sbjct: 425 MKALNDKNNTQSALIDAVKA 444


>gi|153955274|ref|YP_001396039.1| Phage-related DNA helicase [Clostridium kluyveri DSM 555]
 gi|146348132|gb|EDK34668.1| Predicted Phage-related DNA helicase [Clostridium kluyveri DSM 555]
          Length = 453

 Score =  265 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K+   +HD K+ ALE +
Sbjct: 255 VYDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIY-DDDKNTHIIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++  F       K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIKAKFNVREI--KTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 427 ALRRKEKTQSDLINAVKA 444


>gi|197303505|ref|ZP_03168544.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
 gi|197297503|gb|EDY32064.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 120/205 (58%), Gaps = 8/205 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + E++  L+   I A N+A+ + K LQ+ANGAVY D+     ++HD+K+ ALE +
Sbjct: 132 LYDDMEAEMFLPLRTGEITAANAAALSGKLLQMANGAVYSDDGDE-IQIHDQKLDALEDL 190

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  DL R+++   + +          +I++WN G++P+   HPAS 
Sbjct: 191 IEAANGKPVMVAYWFKHDLTRIRRRLSERKISFEKLDSEESIRKWNRGELPVALIHPASA 250

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL++F L W LE +QQ + R+     RQ      V V ++I   TIDE 
Sbjct: 251 GHGLNLQSGGNILIWFGLTWSLELYQQTVARL----WRQGQSAETVVVQHIITAGTIDED 306

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           V++ L  K   Q+ L+ A+K    H
Sbjct: 307 VMKALANKDMTQNRLIAAVKARVTH 331


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 152/187 (81%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH
Sbjct: 262 DEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYH 321

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS
Sbjct: 322 WKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFS 381

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+Q++LL+
Sbjct: 382 HWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQNILLD 441

Query: 197 ALKKETI 203
           A+KK  I
Sbjct: 442 AMKKRGI 448


>gi|284048430|ref|YP_003398769.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
 gi|283952651|gb|ADB47454.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
          Length = 449

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y  F++ L  +L G  + A N+AS T+K  Q+ANGA+Y D+ K    +HD K+ ALE 
Sbjct: 252 KRYQDFKKSLVMELPGGEVTAANAASLTLKLTQMANGAIYTDDGKT-IHLHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ +   + R L K      +WN GKIP+   HPAS GH
Sbjct: 311 LVESANGRPVLVAYWFRHDKERICQRM-EAREL-KSSQDFADWNAGKIPVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL++F L W LE +QQ + R+     RQ    R V V +++ ++TIDE +L
Sbjct: 369 GLNLQQGGSILIWFGLTWSLELYQQTVARL----WRQGQESRTVIVQHIVTKSTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K + Q  L+ A+K +
Sbjct: 425 KALEKKDSSQAALIEAVKAD 444


>gi|211731851|gb|ACJ10150.1| DEAD box helicase [Bacteriophage APSE-4]
          Length = 442

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/182 (57%), Positives = 143/182 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE 
Sbjct: 261 AHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALES 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGH
Sbjct: 321 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 381 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440

Query: 182 QR 183
           +R
Sbjct: 441 ER 442


>gi|57234142|ref|YP_181811.1| SNF2 domain-containing protein [Dehalococcoides ethenogenes 195]
 gi|57224590|gb|AAW39647.1| SNF2 domain protein [Dehalococcoides ethenogenes 195]
          Length = 448

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 113/201 (56%), Gaps = 7/201 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y   ++E    L    + A N+AS T K  QLANGA+Y D      E HD K+ ALE I
Sbjct: 255 RYEDLKQEFILQLPDGEVTAANAASLTGKLSQLANGAIYAD-TGEIIEFHDRKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL+R++  F       K    I +WN GKIP+   HPAS GHG
Sbjct: 314 IEAANEKPLLVAYWFRHDLSRIKNRFNVREI--KTSRDIADWNAGKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TIDE +++
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQGQESHTVVIQHIITKGTIDERIMR 427

Query: 183 RLRTKSTIQDLLLNALKKETI 203
            L  K   Q  L++A+K E +
Sbjct: 428 ALTKKELTQSALIDAVKAEVV 448


>gi|227498325|ref|ZP_03928475.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903787|gb|EEH89705.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 457

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + ++ L  +L G  + A N+AS T+K  Q+ANGA+Y D+ K    +HD K+ ALE +
Sbjct: 253 RYDELKKYLVLELPGGEVTAANAASLTLKLSQMANGAIYTDD-KDVVTIHDRKLDALEDL 311

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  D  R++K   + R L K+     +WNEGKIP+   HPAS GHG
Sbjct: 312 VESANGKPVLVAYWFKHDKDRIRKRM-EAREL-KESQDFADWNEGKIPVALIHPASAGHG 369

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ILV+F L W +E +QQ   R+     RQ    + V + +++A++TIDE +L+
Sbjct: 370 LNLQQGGSILVWFGLTWSMELYQQTNARL----WRQGQTDKTVIIQHIVAKSTIDERILK 425

Query: 183 RLRTKSTIQDLLLNALKKE 201
            L  K   Q  L+ A+K +
Sbjct: 426 VLEHKDGTQSALIEAVKAD 444


>gi|211731857|gb|ACJ10155.1| DEAD box helicase [Bacteriophage APSE-3]
          Length = 440

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/180 (58%), Positives = 144/180 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE 
Sbjct: 261 AHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALES 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGH
Sbjct: 321 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 381 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|317132765|ref|YP_004092079.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315470744|gb|ADU27348.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 450

 Score =  261 bits (667), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 116/199 (58%), Gaps = 7/199 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y + + +L  +L G+ I A N+A+ T K  QLANGA+Y D+ K   E HD K+ ALE 
Sbjct: 256 KRYEELKNDLVLELHGDEITAANAATLTGKLSQLANGAIYSDDGK-IIEFHDRKLDALED 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE AN  P++VAY F  DL R+++ F       K    I +WN G IP+   HPAS GH
Sbjct: 315 IIEAANGKPLLVAYWFRHDLERIRRRFDVREI--KSSQDIDDWNAGNIPVAVIHPASAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+     RQ    R V + +++  +TID  +L
Sbjct: 373 GLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQKSRTVVIQHIVTASTIDGQIL 428

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+ A+K 
Sbjct: 429 NALKHKDKTQSALIAAVKA 447


>gi|154504835|ref|ZP_02041573.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
 gi|153794718|gb|EDN77138.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score =  260 bits (664), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 9/202 (4%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE
Sbjct: 250 ALYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALE 308

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +IE AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS G
Sbjct: 309 DLIESANGKPLLVAYWFKHDRERILKRFP-ARDIN-TKKDIEDWNEGKIPVALIHPASAG 366

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +
Sbjct: 367 HGLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDI 421

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ +  K   Q+ ++ A+K   
Sbjct: 422 LRAIEKKDNTQNAMIEAVKARI 443


>gi|317501093|ref|ZP_07959299.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897480|gb|EFV19545.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 450

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y   ++EL   L    + A N+AS T K  QLANGA+Y D      E HD K+ ALE I
Sbjct: 255 RYEDLKQELILQLPDGEVTAANAASLTGKLSQLANGAIYAD-TGEVIEFHDRKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL+R++  F       K    I +WN GKIP+   HPAS GHG
Sbjct: 314 IEAANEKPLLVAYWFRHDLSRIKNRFNVREI--KTSRDIADWNAGKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TIDE +++
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARL----WRQGQESGTVVIQHIITKGTIDERIVK 427

Query: 183 RLRTKSTIQDLLLNALKKE 201
            L  K   Q  L++A+K +
Sbjct: 428 ALSKKEMTQTALIDAVKAD 446


>gi|71911260|ref|YP_282810.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94989079|ref|YP_597180.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94992970|ref|YP_601069.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
 gi|71854042|gb|AAZ52065.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542587|gb|ABF32636.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546478|gb|ABF36525.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 440

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIY-DDDKSTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  D  RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDFERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|167757891|ref|ZP_02430018.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
 gi|167664545|gb|EDS08675.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
          Length = 454

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 114/204 (55%), Gaps = 8/204 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y  F+R+L   L    I A N+A+ + K  Q+ANGAVY D+ +    +HD K+ ALE
Sbjct: 253 VQRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAVYTDDGET-IAIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPA 117
            IIE     P++VAY F  DL R+     + +          +I  WN G++P+   HPA
Sbjct: 312 DIIESMGGKPLLVAYWFRHDLERIAGRLHKLKIPFSRLDSSESIHRWNAGELPVALIHPA 371

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V V ++I + TID
Sbjct: 372 SAGHGLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQQSDTVVVQHIITKGTID 427

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +++ L  K T Q  L+ A+K +
Sbjct: 428 ERIMKALSEKDTTQAALIEAVKAD 451


>gi|225573262|ref|ZP_03782017.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039394|gb|EEG49640.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
          Length = 454

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 114/203 (56%), Gaps = 8/203 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y  F+R+L   L    I A N+A+ + K  Q+ANGAVY DE +    +HD K+ ALE 
Sbjct: 254 QRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAVYTDEGET-IAIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPAS 118
           IIE     P++VAY F  DL R+     + +          +I+ WN G++P+   HPAS
Sbjct: 313 IIESMGGKPLLVAYWFRHDLERITGRLHKLKIPFSRLDSSKSIRRWNSGELPVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + ++I + TIDE
Sbjct: 373 AGHGLNLQSGGSTLVWFGLTWSLELYQQTNARL----WRQGQQSDIVVIQHIITKGTIDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            +++ L  K T Q  L+ A+K +
Sbjct: 429 RIMKALSEKDTTQAALIEAVKAD 451


>gi|218133421|ref|ZP_03462225.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990796|gb|EEC56802.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
          Length = 457

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 9/201 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE 
Sbjct: 251 LYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALED 309

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS GH
Sbjct: 310 LIESANGKPLLVAYWFKHDRERILKRFP-ARDIN-TKKDIEDWNEGKIPVALIHPASAGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +L
Sbjct: 368 GLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDIL 422

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + +  K T Q+ ++ A+K   
Sbjct: 423 RAIEKKDTTQNAMIEAVKARI 443


>gi|157311154|ref|YP_001469199.1| helicase [Streptococcus phage P9]
 gi|119104303|gb|ABL61048.1| helicase [Streptococcus phage P9]
          Length = 440

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D +K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLVNKLLQMANGAIY-DADKTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN G+IP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGRIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|211731841|gb|ACJ10144.1| DEAD box helicase [Bacteriophage APSE-5]
          Length = 440

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 103/180 (57%), Positives = 140/180 (77%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE 
Sbjct: 261 AHYQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALES 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 321 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 381 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|153814245|ref|ZP_01966913.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
 gi|145848641|gb|EDK25559.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
          Length = 457

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 9/201 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAVY DE  + + +HD K+ ALE 
Sbjct: 251 LYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAVY-DESGNVRNIHDRKLDALED 309

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ K FP  R ++     I++WNEGKIP+   HPAS GH
Sbjct: 310 LVESANGKPLLVAYWFKHDRERILKRFP-ARDIN-TKKDIEDWNEGKIPVALIHPASAGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +L
Sbjct: 368 GLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDIL 422

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + +  K   Q+ ++ A+K   
Sbjct: 423 RAIEKKDNTQNAMIEAVKARI 443


>gi|325687762|gb|EGD29783.1| SNF2 domain protein [Streptococcus sanguinis SK72]
          Length = 450

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 131/201 (65%), Gaps = 7/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG +Y DE +    +HD+K+ ALE
Sbjct: 249 LAVYKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANGMIY-DENRDTVLLHDQKLVALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY F  DL R+++ FP+ R + +    I+EWN+GKIPL   HPAS G
Sbjct: 308 EMVESMNGRPLLVAYWFQHDLKRIKERFPEARVI-QSNQDIEEWNKGKIPLGLIHPASSG 366

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I +NTIDE V
Sbjct: 367 HGLNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKNTIDEQV 421

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++RL+ K   Q  L++A+K E
Sbjct: 422 MKRLKEKDISQQSLIDAVKYE 442


>gi|220930418|ref|YP_002507327.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000746|gb|ACL77347.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 457

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +Y K +R+L   L   +I A  +A  + K LQ ANGAVY +E +  +++H+ K+ ALE 
Sbjct: 254 AKYRKLERDLLLPLVDGDIVANTAAVLSNKLLQFANGAVY-NENQEIQKIHNAKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---CTIQEWNEGKIPLLFAHPAS 118
           I+E AN  P+++ Y +  DL+R+Q+ F Q RTL K P     I +WN GKI LL  HP S
Sbjct: 313 ILEAANGHPVLLFYSYKHDLSRIQERFTQTRTLRKGPEGSKDIADWNSGKIQLLAVHPGS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+      + G K++V +++L+A  TIDE
Sbjct: 373 AGHGLNLQDGGSIIVWFGLTWSLELYQQANARL-----HRQGQKQSVIIHHLVADGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V++ L  K+T QD L+ A+K     V
Sbjct: 428 DVMRALEDKATGQDALMEAVKARIERV 454


>gi|313895516|ref|ZP_07829072.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975642|gb|EFR41101.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 454

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + ++++   L G  I+A ++A+ + K LQ+ANGAVY  E      +HD K+ ALE +
Sbjct: 255 LYDRMKQDMVVALGGTEIDAVSAAALSGKLLQMANGAVYT-ENGKSVHLHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY +  DL R+++  P      +    I+ WN  KI +   HPAS GHG
Sbjct: 314 VESANGKPVLVAYWYRHDLERIKERLPVQEI--RSSADIENWNAEKISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+GG+ L++F L W LE +QQ   RI      + G K  V ++++I   TIDE V+Q
Sbjct: 372 LNLQFGGSTLIWFGLTWSLELYQQTNARI-----YRQGQKGTVVIHHIITVGTIDENVMQ 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALGRKNKTQTALIDAVKA 444


>gi|225871338|ref|YP_002747285.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
 gi|225700742|emb|CAW95382.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
          Length = 440

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIY-DDDKTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|306826832|ref|ZP_07460132.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
 gi|304430850|gb|EFM33859.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 440

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|281416462|ref|YP_003347382.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|270209638|gb|ACZ64177.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|315160593|gb|EFU04610.1| protein, SNF2 family [Enterococcus faecalis TX0645]
 gi|315579439|gb|EFU91630.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 459

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+      + G  + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQQANARLD-----RQGQTQPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 430 KALQAKEQGQSALMAAVKAKI 450


>gi|159146252|gb|ABW90589.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146254|gb|ABW90590.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146256|gb|ABW90591.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/179 (58%), Positives = 143/179 (79%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE 
Sbjct: 117 AHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGH
Sbjct: 177 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|300764700|ref|ZP_07074691.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
 gi|300514586|gb|EFK41642.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
          Length = 451

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 120/200 (60%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y +F+ +L   L+   I+A N+A  + K LQ+ANGA+Y DE      +HD+K+ ALE 
Sbjct: 255 QKYDEFKADLVLQLKEATIDAANTAVLSNKLLQMANGAIY-DEFNVSHHIHDQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE  N  PI++AY F  DL R+++ F   +   K    I +WNEG IP+   HPAS GH
Sbjct: 314 LIEGTNGKPILIAYWFQHDLERIKERFNVRQI--KTSQDIIDWNEGSIPIAVIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE + Q   R+      + G    V ++++IA++TIDE V+
Sbjct: 372 GLNLQAGGSTLVWFGLTWSLELYLQTNARLW-----RQGQSDTVVIHHIIAKDTIDEDVM 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L+ K   Q  L++A+K  
Sbjct: 427 LALKRKDKTQSCLIDAVKAR 446


>gi|139473885|ref|YP_001128601.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
 gi|134272132|emb|CAM30377.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 440

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|300933380|ref|ZP_07148636.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 454

 Score =  257 bits (657), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 125/200 (62%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DEE +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEEGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ +  PQ R L      I+ WNEG IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRQRITERLPQAREL-TTSADIEAWNEGGIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L + +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLASADTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L +K+ IQ  L++A+  E
Sbjct: 427 AALESKNDIQSALIDAVTSE 446


>gi|304389862|ref|ZP_07371821.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327038|gb|EFL94277.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 458

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L   L  E I+A N+A+ + K LQLA+GA+Y  +   W  VHD K+ ALE 
Sbjct: 254 KVYEQLKADLVLQLGDETIDAANAAALSGKLLQLASGAIYTGDGD-WASVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E  N  P++VAY F  D  R+   FPQ R L K    I+ WN+G+I     HPAS GH
Sbjct: 313 LVEATNGNPLLVAYWFTHDRERITARFPQAREL-KTSADIEAWNKGEITFGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  L+NA+ +E 
Sbjct: 427 RALDVKDATQAALINAVAQEI 447


>gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + +   +L    I A N+AS T K  QLANGA+Y D+E +  E HD K+ ALE IIE A
Sbjct: 259 LKADFILELPEGEITAANAASLTGKLSQLANGAIY-DDESNIVEFHDRKLDALEDIIESA 317

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           N  P++VAY F  DL R++K F       K    I +WN G IP+   HPAS GHGLNLQ
Sbjct: 318 NGKPLLVAYWFKHDLQRIKKHFDVREI--KTSKDIIDWNNGDIPVAVIHPASAGHGLNLQ 375

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            GG+ L++F L W LE +QQ   R+     RQ      V + ++I + TIDE +L+ L  
Sbjct: 376 AGGSTLIWFGLTWSLELYQQTNARL----WRQGQSSGTVVIEHIITKGTIDERILKALSL 431

Query: 187 KSTIQDLLLNALKK 200
           K   Q+ L++A+K 
Sbjct: 432 KEVSQNALIDAVKA 445


>gi|28895337|ref|NP_801687.1| hypothetical protein SPs0425 [Streptococcus pyogenes SSI-1]
 gi|28810583|dbj|BAC63520.1| hypothetical protein (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 442

 Score =  257 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 249 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 308 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 363

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 364 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 418

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 419 LRILQGKEKNQNALLEAVKAQ 439


>gi|21910976|ref|NP_665244.1| putative helicase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876470|ref|NP_795678.1| putative helicase [Streptococcus pyogenes phage 315.6]
 gi|50913383|ref|YP_059355.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|21905184|gb|AAM80047.1| putative helicase - phage-associated [Streptococcus pyogenes
           MGAS315]
 gi|50902457|gb|AAT86172.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 440

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNALLEAVKAQ 437


>gi|257088837|ref|ZP_05583198.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256997649|gb|EEU84169.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 430

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 227 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 286 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 345

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+      + G  + V +++L+ + TIDE V+
Sbjct: 346 GLNLQKGGHIIVWFGLTWSLEFYQQANARLD-----RQGQTQPVIIHHLVTKGTIDEQVI 400

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 401 KALQAKEQGQSALMAAVKAKI 421


>gi|209559301|ref|YP_002285773.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
 gi|209540502|gb|ACI61078.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
          Length = 440

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y D++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY-DDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L     ++ +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEEL----TSVDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQQANARLD-----RQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNDLLEAVKAQ 437


>gi|159146264|gb|ABW90595.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/179 (58%), Positives = 140/179 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE 
Sbjct: 117 AHYHAMEKELFLELSDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 177 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|159146258|gb|ABW90592.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/179 (57%), Positives = 140/179 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE 
Sbjct: 117 AHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGH
Sbjct: 177 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|273810587|ref|YP_003344968.1| gp33 [Sodalis phage SO-1]
 gi|258619872|gb|ACV84125.1| gp33 [Sodalis phage SO-1]
          Length = 474

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 139/208 (66%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFESELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  L K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVALGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNFEHFSQIVERIGPVRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DELV +R  +K  IQD L+  +K +
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMKAK 470


>gi|300856809|ref|YP_003781793.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300436924|gb|ADK16691.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 443

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 124/202 (61%), Gaps = 9/202 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y + +++L  +L  E+I A N+A  T K LQ++NGA+Y ++ K   ++HDEK+KAL  I
Sbjct: 239 KYKELEKDLVLELGKEDITAANAAVLTNKLLQMSNGAIYSED-KKVVKIHDEKLKALFEI 297

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++V Y F  D  R+       +      KD   I+ WN+G+IP+L  HPAS 
Sbjct: 298 IEAANGKPVLVFYSFKHDFDRIINFLSSKKLKAVGLKDSADIKRWNKGEIPILLIHPASA 357

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQYGGNI+V+F L W LE +QQ   R+      + G K  V + ++IA+ T+DE 
Sbjct: 358 GHGLNLQYGGNIIVWFGLTWSLELYQQANARL-----HRQGQKETVVINHIIAKGTVDED 412

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V++ L  K   Q++LL A+K  
Sbjct: 413 VMKSLGNKKVNQNILLEAVKAR 434


>gi|325478705|gb|EGC81816.1| type III restriction enzyme, res subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 448

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 126/198 (63%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+VY DE+K+   +HD K+ ALE +
Sbjct: 255 IYETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSVY-DEDKNMIHIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++  F       K     +EWN+GKIP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIKDRFDLREL--KTSEDFKEWNQGKIPVAIIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALENKNKTQAALIDAVKA 444


>gi|227520161|ref|ZP_03950210.1| helicase [Enterococcus faecalis TX0104]
 gi|227072406|gb|EEI10369.1| helicase [Enterococcus faecalis TX0104]
 gi|315574062|gb|EFU86253.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315582007|gb|EFU94198.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 455

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+  ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEETDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+      + G  + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQQANARLD-----RQGQTQPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 430 KALQAKEQGQSALMAAVKAKI 450


>gi|159146260|gb|ABW90593.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/178 (58%), Positives = 140/178 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ LE I
Sbjct: 118 HYQAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQVLESI 177

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHG
Sbjct: 178 VNEAGGMPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHG 237

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           LNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 238 LNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|331090252|ref|ZP_08339139.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401871|gb|EGG81446.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 453

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 121/204 (59%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++    +  +++A N+A+ + K LQ+ANGAVY DE    + +HD+K+ ALE 
Sbjct: 250 KLYRQKEKDMLLPFEDGDVDAVNAAALSGKLLQMANGAVY-DENHKVRHIHDKKLDALED 308

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DL R+ + F       K    I++W EGKIP+   HPAS GH
Sbjct: 309 LIEAANGKPVLVAYWYQHDLDRIVERFKAVPL--KAAGDIRKWKEGKIPVAAIHPASAGH 366

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG+IL++F L W LE + Q   R+      + G +  V +Y++I + T+DE  +
Sbjct: 367 GLNIQDGGHILIWFGLTWSLELYMQCNARLW-----RQGQRETVMIYHIINKGTLDEDAM 421

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L  K   Q  +++A+K     V
Sbjct: 422 RSLEQKDCGQSAIIDAVKARIGGV 445


>gi|153938777|ref|YP_001391667.1| SNF2 domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152934673|gb|ABS40171.1| SNF2 domain protein [Clostridium botulinum F str. Langeland]
 gi|295319699|gb|ADG00077.1| SNF2 domain protein [Clostridium botulinum F str. 230613]
          Length = 454

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 133/205 (64%), Gaps = 11/205 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M +Y + +++L  +L  ++I A N+A  T K LQ++NGA+Y ++ K   E+H+EK+KAL 
Sbjct: 252 MDKYKQLEKDLVIELGEDDITATNAAVLTNKLLQMSNGAIYSED-KSVLEIHEEKLKALL 310

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----KDPCTIQEWNEGKIPLLFAHP 116
            IIE AN  P+++ Y F  D  R+   F + + L+    +D   I++WN G+IP+L  HP
Sbjct: 311 DIIEAANGKPVLIFYSFKHDFDRIVN-FLKTKKLNAIGLEDSKDIKKWNNGEIPILLVHP 369

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQYGGNI+V+F L W LE +QQ   R+      + G K +V +++L++++T+
Sbjct: 370 ASAGHGLNLQYGGNIIVWFGLTWSLELYQQANARL-----HRQGQKESVIIHHLVSKDTV 424

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE V++ L +K   Q++LL A+K  
Sbjct: 425 DEDVIKALDSKEVNQNVLLEAVKAR 449


>gi|50843064|ref|YP_056291.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|50840666|gb|AAT83333.1| conserved phage-associated protein [Propionibacterium acnes
           KPA171202]
 gi|315106939|gb|EFT78915.1| protein, SNF2 family [Propionibacterium acnes HL030PA1]
          Length = 458

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+Y DE     EVH  K+ ALE 
Sbjct: 254 AVYEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAIY-DEHGDTVEVHGAKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE AN   ++VAY +  D  R+Q+ FPQ R L K    I+ WN G IPL   HPAS GH
Sbjct: 313 IIEAANGQTVLVAYWYRHDRERIQRRFPQAREL-KTSADIEAWNRGDIPLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L A  T+D+ VL
Sbjct: 372 GLNLQSGGHLLVWFSLTWSLELYQQTNARL-----YRQGQAEPVTITHLTATGTLDQAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K   Q  L++A+  E
Sbjct: 427 KALEAKDMTQAALIDAVATE 446


>gi|29374969|ref|NP_814122.1| SNF2 domain-containing protein [Enterococcus faecalis V583]
 gi|29342427|gb|AAO80193.1| SNF2 domain protein [Enterococcus faecalis V583]
          Length = 457

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAVY DE    +E+H EK+ ALE 
Sbjct: 254 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAVY-DENGDGREIHQEKLNALER 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKI LL AHP S GH
Sbjct: 313 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKISLLLAHPQSAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +QQ   R+      + G  + V +++L+ + TIDE V+
Sbjct: 373 GLNLQKGGHIIVWFGLTWSLEFYQQANARLD-----RQGQTQPVIIHHLVTKGTIDEQVI 427

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 428 KALQAKEQGQSALMAAVKAKI 448


>gi|313813466|gb|EFS51180.1| protein, SNF2 family [Propionibacterium acnes HL025PA1]
          Length = 458

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+Y DE     EVH  K+ ALE 
Sbjct: 254 AVYEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAIY-DEHGDTVEVHGAKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE AN   ++VAY +  D  R+Q+ FPQ R L K    I+ WN G IPL   HPAS GH
Sbjct: 313 IIEAANGQTVLVAYWYRHDRERIQRRFPQAREL-KTSADIEAWNRGDIPLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L A  T+D+ VL
Sbjct: 372 GLNLQSGGHLLVWFSLTWSLELYQQTNARL-----YRQGQAEPVTITHLTATGTLDQAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K   Q  L++A+  E
Sbjct: 427 KALEAKDMTQAALIDAVATE 446


>gi|225220074|ref|YP_002720041.1| helicase [Enterobacteria phage SSL-2009a]
 gi|224986015|gb|ACN74579.1| helicase [Enterobacteria phage SSL-2009a]
          Length = 474

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/208 (49%), Positives = 139/208 (66%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFEAELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  + K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVAMGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNYEHFAQIVERIGPIRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DELV +R  +K  IQD L+  +K +
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMKAK 470


>gi|297587094|ref|ZP_06945739.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
 gi|297575075|gb|EFH93794.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
          Length = 447

 Score =  254 bits (650), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 126/198 (63%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+VY DE+K+   +HD K+ ALE +
Sbjct: 255 IYETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSVY-DEDKNMIHIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++  F       K    ++EWN+G IP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIKDRFDVREL--KASEDLKEWNQGNIPVAIIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALENKNKTQAALIDAVKA 444


>gi|260579063|ref|ZP_05846962.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602814|gb|EEW16092.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
          Length = 453

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 121/197 (61%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL R+ + FPQ R L      I  WN  +IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDLQRITERFPQAREL-TTSTDIAAWNAREIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|226949727|ref|YP_002804818.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843727|gb|ACO86393.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 456

 Score =  254 bits (649), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + +Y + +++L  +L  ++I A N+A  T K LQ++NGA+Y ++ K   E+HDEK+KAL 
Sbjct: 252 INKYKQLEKDLVLELGEDDITAANAAVLTNKLLQMSNGAIYSED-KQVIEIHDEKLKALL 310

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPA 117
            IIE AN  P+++ Y F  D  R+   F   +       D   I++WN G+IP+L  HPA
Sbjct: 311 DIIESANGKPVLIFYSFKHDFDRIVNFFKSKKLNAIGLGDSKDIKKWNNGEIPILLVHPA 370

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQYGGNI+V+F L W LE +QQ   R+      + G K +V +++L++++T+D
Sbjct: 371 SAGHGLNLQYGGNIIVWFGLTWSLELYQQANARL-----HRQGQKESVIIHHLVSKDTVD 425

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E V++ L +K   Q++LL A+K  
Sbjct: 426 EDVIKTLGSKEVNQNVLLEAVKAR 449


>gi|328913305|gb|AEB64901.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens LL3]
          Length = 424

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 124/200 (62%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +Y + +++L       ++ A  +A  + K LQLANGAVY DE    +++HDEK+ ALE 
Sbjct: 227 AKYKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAVY-DENGEIQKLHDEKLNALED 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I++ AN  PI+V Y +  DL R+Q+ F + +TLD     I +WN GKI +L AHPAS GH
Sbjct: 286 IVDAANGKPILVFYSYKHDLERIQQKFKKAKTLDSSRE-IADWNNGKIEMLLAHPASTGH 344

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+++V+F + W LE +QQ   R+      + G K +V V +L+ + T+DE V+
Sbjct: 345 GLNLQDGGHVIVWFGMTWSLELYQQANARLD-----RQGQKHSVIVNHLVTEGTVDEDVM 399

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K+  Q+ L+ A+K  
Sbjct: 400 RALEGKAVGQNALMEAVKAR 419


>gi|159146262|gb|ABW90594.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 103/179 (57%), Positives = 139/179 (77%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE 
Sbjct: 117 AHYQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 177 IVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|304436366|ref|ZP_07396342.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370635|gb|EFM24284.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 447

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/201 (38%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y     +L   ++G+ + A N+   + K  Q+ANG VY D+      +HD K+ ALE 
Sbjct: 252 KMYDSMCEQLVLQMKGDEVTAANAGVLSGKLAQMANGTVYTDDGSTL-HIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE  N  P++V Y F  D  R++K  P  R        I  WN G+I +   HPAS GH
Sbjct: 311 IIESMNGKPLLVPYWFRHDAERIEKRLPCVRL--DTDDAIARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+     RQ      V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQNSNTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K E 
Sbjct: 425 RALKRKDKTQTALIEAVKAEV 445


>gi|116630100|ref|YP_815272.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095682|gb|ABJ60834.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 450

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE +
Sbjct: 253 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQVVQIHQRKLDALEDL 311

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P+++AY F  DLA++++ F Q R + K    I +WN GKIPL   HPAS GHG
Sbjct: 312 VEAANGKPVLIAYWFKHDLAQIKQRF-QVREI-KTTQDINDWNAGKIPLALIHPASAGHG 369

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L+++ L W LE +QQ   R+      + G ++ V +Y+LI + TIDE ++ 
Sbjct: 370 LNLQAGGSTLIWYGLTWSLELYQQTNARLW-----RQGQQQPVVIYHLITEGTIDENIMT 424

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 425 ALKQKDKTQLALINAVKA 442


>gi|318064550|gb|ADV36504.1| helicase [Edwardsiella phage eiMSLS]
          Length = 449

 Score =  253 bits (647), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 96/208 (46%), Positives = 136/208 (65%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--YDEE---KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   D+    K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|167746056|ref|ZP_02418183.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
 gi|167654571|gb|EDR98700.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
          Length = 452

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 120/203 (59%), Gaps = 8/203 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   + EL   L    I A N+AS + K  Q+ANGAVY D+E     VH+ K+ ALE 
Sbjct: 254 KKYEDMKAELVLALPEGEITAANAASLSNKLSQMANGAVYADDE-SILSVHERKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPAS 118
           IIE AN  P++VAY F  DL R+++   + +          +++ WN+G++P+   HPAS
Sbjct: 313 IIESANGKPLLVAYWFKHDLMRIEQRLNEKKIPFQKLDTDASMKRWNKGELPVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F + W LE +QQ + R+     RQ    R V + +++ Q T+DE
Sbjct: 373 AGHGLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQESRTVTIIHILTQGTVDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            +++ L  K + Q  L++A+K E
Sbjct: 429 KIMKALADKDSTQSALIDAVKAE 451


>gi|300909415|ref|ZP_07126876.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893280|gb|EFK86639.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 253 AIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALED 311

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL +++  F       K P  IQ+WN GKIPL   HPAS GH
Sbjct: 312 LVEAANGKPVLVAYWFKHDLIQIKSRFKVREI--KTPRDIQDWNAGKIPLALIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L
Sbjct: 370 GLNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENIL 424

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+NA+K 
Sbjct: 425 AALKRKDKTQLALINAVKA 443


>gi|227530256|ref|ZP_03960305.1| helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227349829|gb|EEJ40120.1| helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 451

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 253 AIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALED 311

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL +++  F       K P  IQ+WN GKIPL   HPAS GH
Sbjct: 312 LVEAANGKPVLVAYWFKHDLIQIKSRFKVREI--KTPRDIQDWNAGKIPLALIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L
Sbjct: 370 GLNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENIL 424

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+NA+K 
Sbjct: 425 AALKRKDKTQLALINAVKA 443


>gi|318064334|gb|ADV36398.1| helicase [Edwardsiella phage eiAU]
          Length = 449

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/208 (46%), Positives = 136/208 (65%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--YDEE---KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   D+    K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|77412062|ref|ZP_00788388.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
 gi|77161867|gb|EAO72852.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
          Length = 458

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++    DL+   + A N+AS + K LQ+ANGAVY ++      +HD+K+ ALE I
Sbjct: 256 YKQFKKDYVLADLENGEVTAANAASLSNKLLQMANGAVYSNDH-QVVSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  D+ R+++   + +   T+ K    I+EWN+GKI +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDVQRIEERLVKLKVKGTILKTEEDIREWNKGKISVGLLHPASA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ Q TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLIWSLELYQQTNARL----WRQGQQADTVVIQHIVTQGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L +K   Q  L+ A+K + 
Sbjct: 431 ILKALESKDAQQSRLIEAVKAQV 453


>gi|57233543|ref|YP_180823.1| SNF2 family helicase [Dehalococcoides ethenogenes 195]
 gi|57223991|gb|AAW39048.1| SNF2 family helicase, putative [Dehalococcoides ethenogenes 195]
          Length = 513

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 8/203 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y + +++L   L   +I A N+A+ T K  QLANGA+Y D+   +  +HD K+ ALE 
Sbjct: 313 QRYDELKQDLVLQLPDGDITAANAAALTGKLCQLANGAIYTDDGDTFT-IHDRKLDALEN 371

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPAS 118
           IIE A+  PI+VAY F  DLAR+ +   +            +I++WN G++P+   HPAS
Sbjct: 372 IIEAASGKPILVAYWFKHDLARITERLQKLHIPFSKLDSADSIRKWNAGELPVALIHPAS 431

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ +V+F L W LE +QQ   R+     RQ      V V +++A++TIDE
Sbjct: 432 AGHGLNLQSGGSCIVWFGLTWSLELYQQTNARL----WRQGQNAETVVVQHIVAKDTIDE 487

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            +L+ L  K + Q  L+ A+K +
Sbjct: 488 RILKVLSKKDSTQAALIAAVKAD 510


>gi|302876787|ref|YP_003845420.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307687468|ref|ZP_07629914.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302579644|gb|ADL53656.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 456

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 125/205 (60%), Gaps = 10/205 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +++L   L G  I A N+AS + K  Q+ANGAVY D+ K + E HD+K+ ALE
Sbjct: 255 LDTYEEMKKDLVLSLPGGEITASNAASLSGKLSQMANGAVYTDD-KSYIEFHDKKLDALE 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            IIE AN  P++VAY +  DL R+++       Q + LD D  +I++WN G++P+   HP
Sbjct: 314 DIIEAANGQPLMVAYWYKHDLIRIEERLKSLGVQYQRLDSD-ASIEKWNRGELPVALVHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQ GG+ LV+F + W LE +QQ   R+     RQ      V + +LI++ TI
Sbjct: 373 ASAGHGLNLQSGGSTLVWFGITWSLELYQQTNARL----YRQGQTASCVKIIHLISKGTI 428

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE +++ L  K   Q  L++A+K +
Sbjct: 429 DERIVKALSDKDNTQAALIDAVKAD 453


>gi|318064442|gb|ADV36452.1| helicase [Edwardsiella phage eiDWF]
          Length = 449

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/208 (46%), Positives = 136/208 (65%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--YDEE---KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   D+    K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 XHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|308174984|ref|YP_003921689.1| SWI/SNF chromatin-remodeling complex subunit snf22 [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607848|emb|CBI44219.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +Y + +++L       ++ A  +A  + K LQLANGAVY DE    +++HDEK+ ALE 
Sbjct: 254 AKYKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAVY-DENGEIQKLHDEKLNALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I++ AN  PI+V Y +  DL R+Q+ F + + LD     I +WN GKI +L AHPAS GH
Sbjct: 313 IVDAANGKPILVFYSYKHDLERIQQKFKKAKPLDSSRE-IADWNNGKIEMLLAHPASTGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+++V+F + W LE +QQ   R+      + G K +V V +L+ + T+DE V+
Sbjct: 372 GLNLQDGGHVIVWFGMTWSLELYQQANARLD-----RQGQKHSVIVNHLVTEGTVDEDVM 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K+  Q+ L+ A+K  
Sbjct: 427 RALEGKAVGQNALMEAVKAR 446


>gi|320530608|ref|ZP_08031660.1| protein, SNF2 family [Selenomonas artemidis F0399]
 gi|320137135|gb|EFW29065.1| protein, SNF2 family [Selenomonas artemidis F0399]
          Length = 429

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 123/201 (61%), Gaps = 7/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + +REL   +   +I A  +A+ T K LQ+ANG+VY DE+     +H+ K  AL+
Sbjct: 226 MRKYAEMERELVLSIGASDITAVTAAALTGKLLQMANGSVY-DEDGEAVTIHEAKADALD 284

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            II       ++  Y +  D A L +  P+ R L K P  I++WN GKI LL  HPAS G
Sbjct: 285 EIIACNEGKSVMAIYSYRHDRATLLRRHPEAREL-KTPEDIRDWNAGKISLLLVHPASAG 343

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ+GG+I+V++ L W LE++QQ  +R+      + G    V +++LIA++T+DE V
Sbjct: 344 HGLNLQHGGHIVVWYGLTWSLEQYQQTNKRL-----HRPGQTEPVILHHLIAKDTVDEDV 398

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++ L  KST Q+ +L A+K  
Sbjct: 399 MRALERKSTGQEGMLQAVKAR 419


>gi|238854134|ref|ZP_04644481.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833210|gb|EEQ25500.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 450

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ A+E +
Sbjct: 253 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQVVQIHQRKLDAIEDL 311

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P+++AY F  DLA++++ F Q R + K    I +WN GKIPL   HPAS GHG
Sbjct: 312 VEAANGKPVLIAYWFKHDLAQIKQRF-QVREI-KTTQDINDWNAGKIPLALIHPASAGHG 369

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L+++ L W LE +QQ   R+      + G ++ V +Y+LI + TIDE ++ 
Sbjct: 370 LNLQAGGSTLIWYGLTWSLELYQQTNARLW-----RQGQQQPVVIYHLITEGTIDENIMT 424

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 425 ALKQKDKTQLALINAVKA 442


>gi|134288567|ref|YP_001110806.1| putative helicase [Salmonella phage SETP3]
 gi|125631932|gb|ABN47335.1| putative helicase [Salmonella phage SETP3]
          Length = 821

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+
Sbjct: 611 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 670

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ + FPQ +   K       ++ WN G+I +L 
Sbjct: 671 DALESIVEELQGAPLLVAYQFKHELERILRRFPQAQAFAKGAKGNKQMESWNRGEIEILC 730

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 731 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 790

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 791 DTLDEVVAARTDEKKSVQEELLNYMKRRG 819


>gi|297585287|ref|YP_003701067.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297143744|gb|ADI00502.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 460

 Score =  251 bits (640), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 9/202 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E     +  ++ A ++A    K LQLANGA+Y DE    +EVHDEK++AL+ 
Sbjct: 254 RAYTQLEKEWLLAFEDADVLAGSAAVVANKLLQLANGAIY-DETGDVQEVHDEKLEALKE 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +IE AN  P++V Y++  D  R+ K     + R L  D   I++WN+G +P+L AHPAS 
Sbjct: 313 LIESANGKPVLVYYNYQHDRDRILKHLKAFKPRVLKTD-QDIRDWNKGNVPVLLAHPASA 371

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+++V+F L W LE +QQ   R+      + G    V V++LI + T+DE 
Sbjct: 372 GHGLNLQAGGHVMVWFGLNWSLELYQQANARL-----HRQGQTETVVVHHLITKGTMDER 426

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+  L+ K T Q+ L+ A+K +
Sbjct: 427 VMAALKQKDTSQEALIAAVKAK 448


>gi|304439204|ref|ZP_07399122.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372336|gb|EFM25924.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 448

 Score =  251 bits (640), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 124/198 (62%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L  +++ ++I+A N+A+ + K LQ+A+G+VY DE K+   +H+ K+ ALE +
Sbjct: 255 IYETLKKDLVVNIKDKDIDAVNAAALSNKLLQMASGSVY-DEYKNMIHIHNRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++  F       K     +EWN+ KIP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIKDRFDVREL--KTSEDFKEWNQSKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L+ A+K 
Sbjct: 427 ALENKNKTQAALIEAVKA 444


>gi|315656930|ref|ZP_07909817.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492885|gb|EFU82489.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 458

 Score =  251 bits (640), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 119/201 (59%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y      W  VH+ K+  LE 
Sbjct: 254 KVYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIYT-SNGQWTAVHERKLDVLED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+   FPQ R L K    I+ WN+G+I L   HPAS GH
Sbjct: 313 LIEAANGNPLLVAYWFTHDRQRITARFPQAREL-KTSADIETWNKGEITLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  L++A+  E 
Sbjct: 427 KALDAKDATQAALIDAVAHEI 447


>gi|300933478|ref|ZP_07148734.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 453

 Score =  251 bits (640), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+Y DE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAIY-DEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+   FP  R L      I +WN  ++PL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRERITTRFPGAREL-TTSADITQWNAREVPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|255306562|ref|ZP_05350733.1| SNF2-related protein [Clostridium difficile ATCC 43255]
          Length = 456

 Score =  250 bits (638), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 9/203 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y D +K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDKDIITASSAAVAANKLLQLANGAIY-DNDKNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            II+ +N  PII+ Y++  D  RL K F   + RT++ +   I +WN G+I LL  HPAS
Sbjct: 314 EIIDVSNGKPIIIFYNYKHDYNRLMKEFKSLKPRTIE-NSKDIYDWNNGRIQLLLCHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+      + G +  V +++LI + TIDE
Sbjct: 373 TGHGLNLQSGGSIIVWFGLTWSLELYQQANARL-----YRQGQRETVIIHHLICKGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            V++ L  K   Q  LL A+K +
Sbjct: 428 QVMEALENKDKGQSALLEAVKAK 450


>gi|259502599|ref|ZP_05745501.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
 gi|259169414|gb|EEW53909.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
          Length = 451

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 253 AIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALED 311

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL+++++ F   R + K    IQ+WN G IPL   HPAS GH
Sbjct: 312 LIEAANGKPVLVAYWFKHDLSQIKQRF-TAREI-KTVKDIQDWNAGNIPLALIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L
Sbjct: 370 GLNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQTVVIHHIITEGTIDENIL 424

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+NA+K 
Sbjct: 425 AALKRKDKTQLALINAVKA 443


>gi|256847828|ref|ZP_05553273.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715517|gb|EEU30493.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 451

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 115/199 (57%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+  N+ S + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 253 AIYDELNAQLVVSTQGKQIDVLNATSLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALED 311

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL +++  F       K P  IQ+WN G IPL   HPAS GH
Sbjct: 312 LVEAANGKPVLVAYWFKHDLIQIKSRFKVREI--KTPRDIQDWNAGNIPLALIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L
Sbjct: 370 GLNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENIL 424

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+NA+K 
Sbjct: 425 AALKRKDKTQLALINAVKA 443


>gi|327461127|gb|EGF07460.1| SNF2 domain protein [Streptococcus sanguinis SK1057]
          Length = 450

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 129/200 (64%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG VY D+ +    +HD+K+ ALE 
Sbjct: 250 AVYKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANGMVY-DDNRKTVLLHDQKLVALEE 308

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E  N  P+++AY F  DL R+++ +P+ R + +    I++WN+GKI L   HPAS GH
Sbjct: 309 MVESMNGRPLLIAYCFQHDLRRIKERYPEARVI-QSNQDIEDWNKGKIVLGLIHPASSGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I +N+IDE V+
Sbjct: 368 GLNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKNSIDEQVM 422

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +RL+ K   Q  L++A+K E
Sbjct: 423 KRLKEKDISQQSLIDAVKYE 442


>gi|302873665|ref|YP_003842298.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307686611|ref|ZP_07629057.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302576522|gb|ADL50534.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 457

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 7/204 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y K ++EL    +  ++ A  +A  + K LQ+ANGAVY DE    KE+H+EK+KAL+ +
Sbjct: 255 KYKKLEKELLLPFEEADVVANTAAVLSNKLLQMANGAVY-DENGEVKEIHNEKLKALDDV 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE AN   I+V Y +  DL RL K    +   +      I++WN+GKIP++  HPAS GH
Sbjct: 314 IEAANGKSILVFYSYKHDLERLSKHLKNKAFKVLNTSKDIEKWNKGKIPIMLVHPASAGH 373

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ+GGNI+V+F L W LE +QQ   R+      + G  + V V ++IA+ TIDE V+
Sbjct: 374 GLNLQFGGNIIVWFGLTWSLELYQQANARL-----YRQGQTQGVIVNHIIAKGTIDEEVM 428

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L  K   Q  L+ A+K     +
Sbjct: 429 KALENKEKGQSTLIEAVKARLKKI 452


>gi|319757800|gb|ADV69742.1| phage related DNA helicase [Streptococcus suis JS14]
          Length = 458

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 9/205 (4%)

Query: 2   KQYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +Y +F++E    +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE
Sbjct: 254 AKYSQFKKEYVMSELDGLEVTAANAASLTNKLVQLSNGAVYSDDH-TVVALHEQKLDALE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPA 117
            I+E AN  P++VAY F  DLAR+     + R      K    I+EWN+G +P+   HPA
Sbjct: 313 DILESANGEPVLVAYWFKHDLARIINRIEKLRVKSRVLKTEEDIREWNKGNVPVGLLHPA 372

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TID
Sbjct: 373 GAGHGLNLQKGGHNLVWFGLTWSLELYQQTNARL----WRQGQESETVVIQHIVTEGTID 428

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +L+ L  K   Q+ L+ A+K + 
Sbjct: 429 EEILKALENKDAQQERLIEAVKAQV 453


>gi|313896513|ref|ZP_07830064.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974937|gb|EFR40401.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 447

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 111/201 (55%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   +L   ++G+ + A N+   + K  Q+ANGAVY D+      +HD K+ ALE 
Sbjct: 252 KIYTEMCDQLVLQMKGDEVTAANAGVLSGKLAQMANGAVYTDDGTTL-HIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +E  N  P++VAY F  D  R++K     R        I  WN G+I +   HPAS GH
Sbjct: 311 FVESMNGKPLLVAYWFRHDAERIEKRVTCVRL--DTDDAIARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+     RQ    + V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARL----YRQGQTAKTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K E 
Sbjct: 425 RALKRKDKTQAALIEAVKAEV 445


>gi|300909460|ref|ZP_07126921.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893325|gb|EFK86684.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 253 AIYDELNAQLVVSAQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIIQIHQRKLDALED 311

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL +++  F       K P  IQ+WN GKIPL   HPAS GH
Sbjct: 312 LVEAANGKPVLVAYWFKHDLIQIKSRFKVREI--KTPRDIQDWNAGKIPLALIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L
Sbjct: 370 GLNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENIL 424

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+NA+K 
Sbjct: 425 AALKRKDKTQLALINAVKA 443


>gi|254975145|ref|ZP_05271617.1| SNF2-related protein [Clostridium difficile QCD-66c26]
 gi|255092535|ref|ZP_05322013.1| SNF2-related protein [Clostridium difficile CIP 107932]
 gi|255314272|ref|ZP_05355855.1| SNF2-related protein [Clostridium difficile QCD-76w55]
 gi|255516952|ref|ZP_05384628.1| SNF2-related protein [Clostridium difficile QCD-97b34]
 gi|255650054|ref|ZP_05396956.1| SNF2-related protein [Clostridium difficile QCD-37x79]
 gi|260683194|ref|YP_003214479.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260686790|ref|YP_003217923.1| snf2-related protein [Clostridium difficile R20291]
 gi|306519589|ref|ZP_07405936.1| snf2-related protein [Clostridium difficile QCD-32g58]
 gi|260209357|emb|CBA62788.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260212806|emb|CBE03974.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile R20291]
          Length = 456

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 9/203 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y D +K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDRDIITASSAAVAANKLLQLANGAIY-DNDKNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            II+ +N  PIIV Y++  D  RL K F   + RT++ +   I +WN G+I LL  HPAS
Sbjct: 314 EIIDVSNGKPIIVFYNYKHDYNRLMKEFKSLKPRTIE-NSKDIYDWNNGRIQLLLCHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+I+V+F L W LE +QQ   R+      + G +  V +++LI + TIDE
Sbjct: 373 TGHGLNLQSGGSIIVWFGLTWSLELYQQANARL-----YRQGQRETVIIHHLICKGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            V++ +  K   Q  LL A+K +
Sbjct: 428 QVMEAIENKDKGQSALLEAVKAK 450


>gi|50914495|ref|YP_060467.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|40218555|gb|AAR83209.1| phage helicase [Streptococcus pyogenes]
 gi|50261600|gb|AAT72368.1| helicase [Streptococcus pyogenes]
 gi|50903569|gb|AAT87284.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 458

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 9/204 (4%)

Query: 3   QYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +Y +F++E    +L G  + A N+AS   K +QL+NGAVY D+      +H++K+ ALE 
Sbjct: 255 KYIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAVYSDDH-TVVPLHEQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPAS 118
           I+E AN  P++VAY F  DLAR+     + +      K    I+EWN+G +P+   HPA 
Sbjct: 314 ILESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVLKTEEDIREWNKGNVPVGLIHPAG 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TIDE
Sbjct: 374 AGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQEAETVVIQHIVTEGTIDE 429

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +L+ L  K   Q+ L+ A+K + 
Sbjct: 430 EILKALGNKDAQQERLIEAVKAQV 453


>gi|134299061|ref|YP_001112557.1| SNF2-like protein [Desulfotomaculum reducens MI-1]
 gi|134051761|gb|ABO49732.1| SNF2-related protein [Desulfotomaculum reducens MI-1]
          Length = 454

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 124/204 (60%), Gaps = 7/204 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + +R+L   L   ++ A  +A    K LQ+ANGAVY DE    +E H  K++ALE +
Sbjct: 255 QYEQLERDLLLPLADGDVVANTAAVLANKLLQMANGAVY-DENGMAQEFHKAKLEALEGV 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE+A   P++V Y +  DL R+++ F Q +  + K    I+ WN+GK+ ++ AHPAS GH
Sbjct: 314 IEEAAGKPVLVFYSYRHDLDRIKEHFKQYKPKELKTAEDIKNWNDGKVQIMLAHPASAGH 373

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNI+ +FS  W LE +QQ   R+      + G +RAV +++L+A+ TIDE V+
Sbjct: 374 GLNLQAGGNIIAWFSTPWSLELYQQANARL-----HRQGQQRAVIIHHLVAKGTIDEDVI 428

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L  K   Q+ LL A+K     +
Sbjct: 429 RVLGYKERGQNALLEAVKARIAAI 452


>gi|297583090|ref|YP_003698870.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141547|gb|ADH98304.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 458

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 127/201 (63%), Gaps = 8/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M +    +R+L   ++GE+I A N+A+ + K LQ+ANGAVY D++     +H+ K+ ALE
Sbjct: 253 MARIEAIKRDLIITVEGEDITASNAAALSGKLLQMANGAVY-DDQGQPIAIHERKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E AN  P+++AY F  DL R+Q A+ +   L  +  +IQ+WNEG+I +   HPAS G
Sbjct: 312 DMVEAANGKPVLIAYWFKHDLDRIQ-AWIEATVL-SNAASIQQWNEGRIQVGLIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ+GG+ L++F L W LE +QQ   R+      + G   +V +++LI + T+DE V
Sbjct: 370 HGLNLQFGGSTLIWFGLTWSLELYQQTNARL-----YRQGQTESVAIHHLIGKGTLDERV 424

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++ L+ K   Q   ++A+K E
Sbjct: 425 MKALKKKDVSQTAFIDAVKAE 445


>gi|288799809|ref|ZP_06405268.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333057|gb|EFC71536.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 458

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 127/205 (61%), Gaps = 10/205 (4%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y+KF+R+   +L   + E I A ++A+ + K LQ + GA+Y DE+ +   +H +K++A
Sbjct: 256 KDYNKFERDCVLELFTEEDETITAASAAALSNKLLQFSGGAIY-DEDHNTHVIHTKKLEA 314

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPA 117
           LE ++E AN  PI++ Y F  + +R+ + F   R +    P TI+ WN+G+I +  AHPA
Sbjct: 315 LEDVVEAANGQPILLFYAFKHEESRIIEHFKNLRVVKLDTPETIKAWNKGEIDIAIAHPA 374

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ+GGNI+V++ L W LE +QQ   R+      + G  + V +Y+LI++ TID
Sbjct: 375 SVGHGLNLQHGGNIIVWYGLTWSLELYQQANARL-----HRQGQSKPVKIYHLISEGTID 429

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +++ L  K   Q+ L+ A+K   
Sbjct: 430 EEIVKALSNKDKTQNGLMQAVKARI 454


>gi|331007741|ref|ZP_08330867.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
 gi|330418449|gb|EGG92989.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
          Length = 479

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 124/185 (67%), Gaps = 5/185 (2%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           E IE  N+A+ + K LQ +NGA+Y +++ HW+ VHD K+ ALE II++A   P++VAY++
Sbjct: 277 ETIEVLNAAALSNKLLQFSNGAIYTNDQGHWEAVHDLKLSALEEIIQEAAGQPVLVAYNY 336

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            SDLAR+++ FPQ   +     +I  WN GKI LL AHPAS GHGLNLQ+GGN +V+F L
Sbjct: 337 KSDLARIKEHFPQAECITDSEDSIDRWNAGKISLLLAHPASAGHGLNLQHGGNTIVWFGL 396

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W LE +QQ   R+      + G  + V +++L+   +IDE V++ L++K T Q  LLNA
Sbjct: 397 NWSLELYQQFNARL-----HRQGQTKPVIIHHLVVNGSIDETVIEALKSKKTTQKALLNA 451

Query: 198 LKKET 202
           LKK+ 
Sbjct: 452 LKKDI 456


>gi|76788487|ref|YP_329361.1| prophage LambdaSa04, SNF2 family helicase [Streptococcus agalactiae
           A909]
 gi|76563544|gb|ABA46128.1| prophage LambdaSa04, helicase, SNF2 family [Streptococcus
           agalactiae A909]
          Length = 458

 Score =  247 bits (631), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 120/206 (58%), Gaps = 9/206 (4%)

Query: 4   YHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++ +  DL+   + A N+AS + K +Q+ANGAVY D+ +    +HD+K+ ALE I
Sbjct: 256 YSQFKKDYIMADLEDTEVTAANAASLSNKLVQMANGAVYSDD-QQVVSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  DL R+++   + +      K    I+EWN+G + +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDLKRIEERLAKLKVKGTVLKTEEDIREWNKGNVSVGLLHPASS 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQQAETVVIQHIVTECTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           +L+ L  K   Q  LL A+K +    
Sbjct: 431 ILKVLENKDAQQARLLEAVKAQVGGT 456


>gi|227875061|ref|ZP_03993206.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304390304|ref|ZP_07372257.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|306817348|ref|ZP_07451093.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
 gi|227844339|gb|EEJ54503.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304326060|gb|EFL93305.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304649789|gb|EFM47069.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score =  247 bits (631), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 119/201 (59%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y  +   W  VHD K+ ALE 
Sbjct: 254 KIYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIYTGD-GQWAPVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           + E AN +P++VAY F  D  R+   FPQ R L K    I+ WN G+I L   HPAS GH
Sbjct: 313 LYEAANGSPLLVAYWFTHDRKRITARFPQAREL-KTSADIEAWNRGEIALGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V +  L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITNLVAEGTLDETVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  L++A+  E 
Sbjct: 427 KALDAKDATQAALIDAVAAEI 447


>gi|62327356|ref|YP_224069.1| hypothetical protein BPKS7gp47 [Salmonella phage SS3e]
 gi|57472390|gb|AAW51252.1| hypothetical protein [Salmonella phage SS3e]
          Length = 474

 Score =  247 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKEWEKVHDTKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFSKGAKGNKQMESWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|260161780|emb|CAZ39324.1| phage related DNA helicase [Streptococcus suis]
 gi|313575362|emb|CBR26891.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 458

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 9/207 (4%)

Query: 3   QYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +Y +F++E    +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE 
Sbjct: 255 KYIQFKKEYVLSELDGLEVTAANAASLTNKLVQLSNGAVYSDDH-TVVSLHEQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPAS 118
           I+E AN  PI+VAY F  DLAR+     + +      K    I+EWN+G +P+   HPA 
Sbjct: 314 ILESANGEPILVAYWFKHDLARIMSRLEKLKLKSQVLKTEEDIREWNKGNVPVGLLHPAG 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TIDE
Sbjct: 374 AGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQESETVVIQHIVTEGTIDE 429

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +L+ L  K   Q+ L+ A+K +    
Sbjct: 430 EILKALENKDAQQERLIAAVKAQIGGT 456


>gi|315654958|ref|ZP_07907863.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315490919|gb|EFU80539.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 452

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+Y +       VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAVNAAVLAGKLTQLASGAIYTEAGDSIV-VHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ   L K    I+ WN+G+IP+   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQASQL-KTSADIEAWNDGEIPIGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ G +IL+++SL W LE +QQ   R+      + G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGSSILIWYSLTWSLELYQQTNARL-----YRQGQTKPVTITHIATKDSIDQRIL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L +K+  Q  L++A+
Sbjct: 427 SALESKNMTQSALIDAV 443


>gi|303239099|ref|ZP_07325629.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302593437|gb|EFL63155.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 452

 Score =  246 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 114/200 (57%), Gaps = 8/200 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y K +RE        +++A N+A    K LQ++NGAVY DE    + +H  K++ LE +
Sbjct: 255 LYRKLEREALLPFVDGDVDAVNAAVLAGKLLQMSNGAVY-DENGGVRSIHRRKLEMLEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++V Y +  D  R+ KAF + R +D  P  I +WN+G+I +  AHPAS GHG
Sbjct: 314 IESANGKPVLVYYAYKHDRERILKAF-KARDID-TPKDISDWNDGRIGIAIAHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ +++F L W LE +QQ   RI      + G    V V ++I   T+DE V+ 
Sbjct: 372 LNLQAGGSTIIWFGLTWSLELYQQANGRI-----HRQGQTETVIVNHIITAGTMDEQVMA 426

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K T Q  L+NA++   
Sbjct: 427 ALNRKETGQTALINAVRARM 446


>gi|227496460|ref|ZP_03926744.1| helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834016|gb|EEH66399.1| helicase [Actinomyces urogenitalis DSM 15434]
          Length = 457

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   + ++   L G  ++A N+A  + K LQ+A+G VY D+     EVH  KI AL  
Sbjct: 254 AHYEALREQMVLGLDGALVDAGNAAGLSNKLLQMASGCVY-DDGGAVVEVHRAKIDALAD 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A+ +P++VAY + SDL RL +A P    L +   ++++WN G IP+   HPAS GH
Sbjct: 313 LIEAASGSPVMVAYWYASDLERLLQAVPGAVEL-RSAESMRQWNAGCIPVGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+ +  W LE +QQ   R+      + G    V +++LIA  TID  VL
Sbjct: 372 GLNLQAGGHHLVWLTAPWSLELYQQTNARLA-----RQGQTHPVSIHHLIAAGTIDVDVL 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           + L  K   Q  L++A++ +
Sbjct: 427 RALERKDVTQSALVDAVRAQ 446


>gi|325690428|gb|EGD32431.1| SNF2 domain protein [Streptococcus sanguinis SK115]
          Length = 450

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 129/201 (64%), Gaps = 7/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y +F+ E+   ++G+ ++A NSAS + K LQ++NG VY DE +    +HD+K+ ALE
Sbjct: 249 LAVYKEFKTEMMVSIKGQVLDAVNSASLSNKLLQMSNGMVY-DENRKAVLLHDQKLVALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY F  DL R+++ F + R + +    I++WN+GKI L   HPAS G
Sbjct: 308 EMVESMNNRPLLVAYWFQHDLKRIKERFSEARVI-QSNQDIEDWNKGKIVLGLVHPASSG 366

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I ++T+DE V
Sbjct: 367 HGLNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKSTMDEQV 421

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++RL+ K   Q  L++A+K E
Sbjct: 422 MKRLKEKDISQQSLIDAVKYE 442


>gi|238018846|ref|ZP_04599272.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
 gi|237864612|gb|EEP65902.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
          Length = 428

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 121/198 (61%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y + +RE    L   +++ A N+A+   K LQLANG++Y D+      VH+EKI+ L+ 
Sbjct: 230 LYKQMEREHVLSLASDDDVSALNAAALAGKLLQLANGSIYNDD-GEIVVVHNEKIERLKE 288

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E     P++V Y+F  DL  +++AFP+   L  D   + +WN+G I +L AHPAS G+
Sbjct: 289 LVETNEGKPMLVFYNFKHDLQSIKEAFPKAVELKTD-DDVAKWNKGNIQMLLAHPASAGY 347

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNI+V++ L W LE++QQ   R+      + G  + V +++L+ + T+DE V+
Sbjct: 348 GLNLQAGGNIIVWYGLTWSLEQYQQANARL-----HRQGQTQPVIIHHLVTKGTMDEQVM 402

Query: 182 QRLRTKSTIQDLLLNALK 199
           + L  K   QD LL A+K
Sbjct: 403 KALERKEAGQDALLEAIK 420


>gi|282534217|gb|ADA82325.1| putative helicase [Escherichia phage K1H]
          Length = 477

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+
Sbjct: 267 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 326

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 327 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 386

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 387 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 446

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 447 DTLDEVVAARTDEKKSVQEELLNYMKRRG 475


>gi|282535269|gb|ADA82475.1| putative helicase [Escherichia phage K1ind3]
 gi|282547318|gb|ADA82375.1| putative helicase [Escherichia phage K1ind1]
 gi|282547370|gb|ADA82426.1| putative helicase [Escherichia phage K1ind2]
          Length = 474

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|298346380|ref|YP_003719067.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236441|gb|ADI67573.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 452

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+Y +       VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAANAAVLAGKLTQLASGAIYTEAGDSIV-VHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ R L K    I+ WN G+IPL   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQARQL-KTSADIEAWNGGEIPLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL+++SL W LE HQQ   R+      + G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGGSILIWYSLTWSLELHQQTNARL-----YRQGQTKPVTITHIATKDSIDQQIL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L +K+  Q  L++A+
Sbjct: 427 RALESKNMTQSALIDAV 443


>gi|217965845|ref|YP_002351523.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|217335115|gb|ACK40909.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|307569607|emb|CAR82786.1| SNF2/RAD54 helicase family protein [Listeria monocytogenes L99]
          Length = 463

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 129/205 (62%), Gaps = 7/205 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            QY + ++E   + +  ++ A ++A  + K LQLANGA+Y DE + ++E+H++K++AL  
Sbjct: 258 AQYSELEKEFLLEFEHSDVVADSAAVLSNKLLQLANGAIY-DENQEYQEIHNKKLEALAD 316

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR-TLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           IIE++   P++V Y +  D  R+     Q +    KD  +I++WN GK  +L AHPAS G
Sbjct: 317 IIEESVGQPVLVFYSYKHDEKRILNHLKQYKPEKIKDSRSIRKWNAGKTRVLLAHPASAG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G K++V V++++A++T+DE V
Sbjct: 377 HGLNLQDGGHIVVWFGLTWSLELYQQANARLF-----RQGQKKSVIVHHIVAKDTLDEKV 431

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           ++ L +K   QD LL A+K     V
Sbjct: 432 IEALSSKKVGQDALLEAVKARLEKV 456


>gi|282533166|gb|ADA82275.1| putative helicase [Escherichia phage K1G]
          Length = 474

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY      +  K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDMKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|291556509|emb|CBL33626.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 454

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 10/202 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + +++   DL    I A N+A  + K  Q+ANGA+Y D+  +   +H++K+ ALE I
Sbjct: 255 AYDEMKKQFILDLPEGEISAANAAVLSGKLSQMANGAIY-DDAGNAVSIHEQKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           IE AN  P++VAY +  DL R+ +   +       LDK   +I+ WN G+I +   HPAS
Sbjct: 314 IESANGKPLLVAYWYQHDLERIMERLHERHIPFSKLDK-ADSIRRWNNGEISVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGN +V+F L W LE + Q I R+     RQ   +  V V +++   TIDE
Sbjct: 373 AGHGLNLQAGGNTIVWFGLTWSLELYSQTIARL----WRQGQTEETVIVQHIVTDGTIDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +L+ L+ K   Q  L+ A+K 
Sbjct: 429 QILRALKAKDKTQSALIAAVKA 450


>gi|262113725|emb|CAR95392.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 458

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query: 3   QYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +Y +F++E    +L G  + A N+AS T K +QL+NGAVY D+      +H++K+ ALE 
Sbjct: 255 KYIQFKKEYVLSELDGLEVTAANAASLTSKLVQLSNGAVYSDDH-SVVALHEQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPAS 118
           I+E AN  P++ AY F  DLAR+     + +      K    I+EWN+G + +   HPA 
Sbjct: 314 ILESANGEPVLGAYWFKHDLARILGRLEKLKVKSRVLKTEEDIREWNKGNVSVGLLHPAG 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F L W LE +QQ   R+     RQ      V + +++ + TIDE
Sbjct: 374 AGHGLNLQKGGHHLVWFGLTWSLELYQQTNARL----WRQGQESETVIIQHIVTEGTIDE 429

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +L+ L  K   Q+ L+ A+K + 
Sbjct: 430 EILKALENKDAQQERLIAAVKAQV 453


>gi|256617084|ref|ZP_05473930.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|257088353|ref|ZP_05582714.1| phage-associated helicase [Enterococcus faecalis D6]
 gi|256596611|gb|EEU15787.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|256996383|gb|EEU83685.1| phage-associated helicase [Enterococcus faecalis D6]
          Length = 451

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 8/199 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y KF+ +L   L+  +I+A N+A  + K LQ+ANGA+Y DE      +HD+K+ ALE +
Sbjct: 255 KYDKFKADLVLQLKDADIDAANAAVLSNKLLQMANGAIY-DEFNVSHHIHDQKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN   I++AY F  DL R+++ F   +   K    I+EWN+G IP+   HPAS GHG
Sbjct: 314 IEGANGKSILIAYWFQHDLERIKERFKVRQI--KTAKDIEEWNKGNIPIGVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+      + G    V ++++IA++TIDE V+ 
Sbjct: 372 LNLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIIAKDTIDEDVML 426

Query: 183 RLRTKSTIQDLLLNALKKE 201
            L+ K   Q  L++A+K  
Sbjct: 427 ALKLKDKTQASLIDAVKAR 445


>gi|266623803|ref|ZP_06116738.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
 gi|288864375|gb|EFC96673.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
          Length = 457

 Score =  240 bits (612), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 9/205 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++ +RE+   L  E I   ++A+ + K LQLANGAVY DE+    EVH+ KI+A   
Sbjct: 255 KAYYEMEREMVLALPEEEISVTSAAALSNKLLQLANGAVY-DEDHSVHEVHNCKIEAFME 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPAS 118
           +IE     P +V Y+F  D AR+ KA  +        K      +WN  KI +L  HPAS
Sbjct: 314 LIESLQGKPALVFYNFQHDRARILKALEKTGLRVRELKTTQDEDDWNARKIDILLTHPAS 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W+ E + Q  +R+      + G +  V +++LI   T DE
Sbjct: 374 SAYGLNLQQGGNHVIWFGLTWNYELYTQANKRL-----HRQGQEEKVIIHHLICSGTRDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKETI 203
            V++ L+ K  +Q  ++ +LK    
Sbjct: 429 DVMEALKRKDDVQSWVMESLKARIR 453


>gi|293400001|ref|ZP_06644147.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306401|gb|EFE47644.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 446

 Score =  237 bits (604), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 9/203 (4%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           M  YH+F+RE    + +   I A N+   T K LQ   GAVY DE    +E+HD K+KAL
Sbjct: 250 MVAYHRFKREKILQICEDGVITAANAGVVTNKLLQFTAGAVY-DENHEVQELHDTKLKAL 308

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPAS 118
           E ++E AN  P++V Y+F  D  R+   FP       +    +++WN+GKI +L  HPAS
Sbjct: 309 EDLLEAANGNPVMVFYYFKHDRDRIIDHFPDVEIRAIECQQDVKDWNDGKIEMLLVHPAS 368

Query: 119 CGHGLNLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            GHGLNLQ GGNI+++++L  W+LE + Q   R+      + G +  V +Y+LIA+ T+D
Sbjct: 369 VGHGLNLQQGGNIIIWYTLPNWNLELYLQANARL-----HRQGQQNTVMIYHLIAKGTVD 423

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           E +++ L  K   Q  L+ ALK+
Sbjct: 424 EDMIRSLEQKDISQKTLIEALKR 446


>gi|237738632|ref|ZP_04569113.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229424115|gb|EEO39162.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 438

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 120/207 (57%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   +L+   I   N+A+ + K LQLANGA+Y DE +   EVHD KI+    
Sbjct: 227 KAYDELEKKAILELEDTEITVANAAALSNKLLQLANGAIY-DENRKVFEVHDCKIERFLE 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPAS 118
           +IE+ N  P +V Y+F  D  R+ +A    +    L K P    +WN+G+I +L AHPAS
Sbjct: 286 LIEQLNGKPALVFYNFQHDKDRIIEALKDSKLRIRLLKTPQDQLDWNKGEIDILLAHPAS 345

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W LE +QQ  +R+      + G    V +++L+ + T DE
Sbjct: 346 AAYGLNLQAGGNHVIWFGLNWSLELYQQANKRL-----HRQGQTEKVIIHHLVCKETRDE 400

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V++ L+ K  +Q+ L+ +LK   + V
Sbjct: 401 DVMEALQNKGDVQEALVESLKVRIMKV 427


>gi|315197730|gb|EFU28064.1| possible helicase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 452

 Score =  234 bits (598), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TLD D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|161509685|ref|YP_001575344.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294848484|ref|ZP_06789230.1| helicase [Staphylococcus aureus A9754]
 gi|160368494|gb|ABX29465.1| possible helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824510|gb|EFG40933.1| helicase [Staphylococcus aureus A9754]
 gi|320140665|gb|EFW32519.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142763|gb|EFW34566.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 455

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TLD D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|87160506|ref|YP_494105.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87126480|gb|ABD20994.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
          Length = 423

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 225 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TLD D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLD-DSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 398 YKALQNKELTQEELMKAIKARIAK 421


>gi|257432448|ref|ZP_05608811.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257283327|gb|EEV13459.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
          Length = 455

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|253581729|ref|ZP_04858953.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
 gi|251836078|gb|EES64615.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
          Length = 459

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 127/202 (62%), Gaps = 9/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK+Y + ++++  +L+ + I+  ++A+ + K +QLANGA+Y DE +   EVH+ KI+A  
Sbjct: 255 MKEYEELEKKMILELEDKTIDVTSAAALSNKLMQLANGAIY-DENRGIHEVHNCKIEAFM 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPA 117
            +IEK N    +V Y+F  DLARLQ+A  +     +   T+++   WN+ +I +L  HPA
Sbjct: 314 ELIEKLNGKAALVFYNFQHDLARLQEALKKTGLKVRILKTVEDQDAWNKKEIDILLTHPA 373

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +GLNLQ GGN +++F L W LE +QQ  +R+      + G K  V V++L+ Q+T D
Sbjct: 374 SSAYGLNLQEGGNHVIWFGLNWSLELYQQANKRL-----HRQGQKEKVIVHHLVVQDTRD 428

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E V++ L TK  +Q+ LL +LK
Sbjct: 429 EDVIKALNTKGDVQEALLESLK 450


>gi|66395597|ref|YP_239997.1| ORF009 [Staphylococcus phage 3A]
 gi|62635943|gb|AAX91054.1| ORF009 [Staphylococcus phage 3A]
          Length = 455

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|257428238|ref|ZP_05604636.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257275079|gb|EEV06566.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
          Length = 455

 Score =  234 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|302333125|gb|ADL23318.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 452

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|21283134|ref|NP_646222.1| hypothetical protein MW1405 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483700|ref|YP_040924.1| hypothetical protein SAR1523 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|148267489|ref|YP_001246432.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393543|ref|YP_001316218.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282905864|ref|ZP_06313719.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282919229|ref|ZP_06326964.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282921765|ref|ZP_06329482.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927343|ref|ZP_06334961.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|21204574|dbj|BAB95270.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49241829|emb|CAG40521.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|147740558|gb|ABQ48856.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945995|gb|ABR51931.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282317039|gb|EFB47413.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282331156|gb|EFB60670.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590667|gb|EFB95743.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594027|gb|EFB99016.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|283470735|emb|CAQ49946.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|298693629|gb|ADI96851.1| putative DNA helicase [Staphylococcus aureus subsp. aureus ED133]
          Length = 455

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y K ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEKLEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|258420304|ref|ZP_05683251.1| helicase [Staphylococcus aureus A9719]
 gi|258448843|ref|ZP_05696953.1| phage helicase [Staphylococcus aureus A6224]
 gi|257843729|gb|EEV68131.1| helicase [Staphylococcus aureus A9719]
 gi|257857880|gb|EEV80771.1| phage helicase [Staphylococcus aureus A6224]
 gi|329730625|gb|EGG67010.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 452

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|295428024|ref|ZP_06820656.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591005|ref|ZP_06949643.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300911909|ref|ZP_07129352.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|295128382|gb|EFG58016.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575891|gb|EFH94607.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300886155|gb|EFK81357.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
          Length = 455

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|209363583|ref|YP_002268001.1| phage helicase [Staphylococcus phage phi2958PVL]
 gi|208973084|dbj|BAG74400.1| phage helicase [Staphylococcus phage phi2958PVL]
          Length = 423

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 225 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 398 YKALQNKELTQEELMKAIKARIAK 421


>gi|295407565|ref|ZP_06817358.1| helicase [Staphylococcus aureus A8819]
 gi|297246595|ref|ZP_06930428.1| helicase [Staphylococcus aureus A8796]
 gi|294967584|gb|EFG43620.1| helicase [Staphylococcus aureus A8819]
 gi|297176553|gb|EFH35818.1| helicase [Staphylococcus aureus A8796]
          Length = 455

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|284024515|ref|ZP_06378913.1| SNF2-related protein [Staphylococcus aureus subsp. aureus 132]
          Length = 452

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|315128428|gb|EFT84436.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329729408|gb|EGG65813.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 452

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 254 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|258427143|ref|ZP_05688065.1| SNF2 family protein [Staphylococcus aureus A9299]
 gi|257849921|gb|EEV73880.1| SNF2 family protein [Staphylococcus aureus A9299]
          Length = 455

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|66395458|ref|YP_239852.1| ORF008 [Staphylococcus phage 2638A]
 gi|62635885|gb|AAX90996.1| ORF008 [Staphylococcus phage 2638A]
          Length = 452

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + +  I A + AS + K LQL+NGAVY D+E   + +HD K+  LE
Sbjct: 254 KLYDELEKHYILESEEDGTIVAQSGASLSQKLLQLSNGAVYTDDE-SVRHLHDRKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   P++V Y+F  D  R+ + F +  TL  D      W +GK+ +L AHPAS G
Sbjct: 313 EIIEESQGQPLLVFYNFKHDKERIMERFDEVVTLG-DESYKDRWIKGKVKILLAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQKGGHIIVWFGLTWSLELYQQANARL-----YRQGQTHTTIIHHIMTDNTIDQKV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            Q L+ K   Q+ L+ A+K     
Sbjct: 427 YQALQNKELTQEDLMQAIKARIKQ 450


>gi|29028643|ref|NP_803332.1| helicase [Staphylococcus phage phi 12]
 gi|18920567|gb|AAL82307.1| phage helicase [Staphylococcus phage phi 12]
          Length = 423

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 225 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 398 YKALQNKELTQEELMKAIKARIAK 421


>gi|66395664|ref|YP_240070.1| ORF008 [Staphylococcus phage 47]
 gi|88195255|ref|YP_500058.1| SNF2 family protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|258445562|ref|ZP_05693744.1| phage helicase [Staphylococcus aureus A6300]
 gi|258455568|ref|ZP_05703525.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|297207823|ref|ZP_06924257.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|62636088|gb|AAX91199.1| ORF008 [Staphylococcus phage 47]
 gi|87202813|gb|ABD30623.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|257855609|gb|EEV78542.1| phage helicase [Staphylococcus aureus A6300]
 gi|257862256|gb|EEV85027.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|296887539|gb|EFH26438.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 455

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|304406781|ref|ZP_07388436.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344314|gb|EFM10153.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 467

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K +++L   ++G  I A ++A  T K LQL NGA+Y D ++   E+HD KI+A   
Sbjct: 265 KLYDKLEKDLLLQVEGTEITATSAAVLTGKLLQLCNGALY-DGDRQVHEIHDNKIEAFME 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           +IE+ N    +V Y +  DLAR++ A  +     ++   P    +WN G++ +L AHPAS
Sbjct: 324 LIEQLNGKSALVFYSYQHDLARIKSALSKSGLRIRELSTPQDQLDWNAGEVDILLAHPAS 383

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +V+F L W LE +QQ   R+      + G K+ V +++L+ Q   DE
Sbjct: 384 AAYGLNLQDGGNHVVWFGLNWSLELYQQANGRL-----HRQGQKQKVILHHLVVQGGADE 438

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+  L  K+ +QD LL ALK     V
Sbjct: 439 DVMAALEGKAAMQDKLLEALKARIERV 465


>gi|49485834|ref|YP_043055.1| hypothetical protein SAS0928 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244277|emb|CAG42704.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 455

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY DEE   + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDEED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKK 200
            + L+ K   Q+ L+ A+K 
Sbjct: 427 YKALQNKELTQEELMKAIKA 446


>gi|312897717|ref|ZP_07757133.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
 gi|310621101|gb|EFQ04645.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
          Length = 463

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 125/209 (59%), Gaps = 11/209 (5%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y + +  +  +L   GE I A ++A+ + K  QLANGAVY DE ++  E+HD KI+A 
Sbjct: 254 RDYDEMETRMVLELVESGEEITAVSAAALSTKLQQLANGAVY-DELRNVHEIHDCKIEAF 312

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHP 116
           + +IE+ +  P +V Y+F  DL RL+ A  + + + K+       +EWNEGKI +L AHP
Sbjct: 313 KELIEQLSGKPALVFYNFKHDLERLKAALDKSKLIVKELKGATEEREWNEGKIDVLLAHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +GLNLQ GGN +++F L W LE +QQ  +R+      + G +  V +++LI+  T 
Sbjct: 373 ASTAYGLNLQDGGNHVIWFGLNWSLELYQQANKRL-----HRQGQREKVIIHHLISIGTR 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETIHV 205
           DE +++ L  K+  Q+ +L +LK     V
Sbjct: 428 DEDMMEALNRKADAQEYVLQSLKARIDKV 456


>gi|296276324|ref|ZP_06858831.1| SNF2 family protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 455

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/200 (39%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 254 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKK 200
            + L+ K   Q+ L+ A+K 
Sbjct: 427 YKALQNKELTQEELMKAIKA 446


>gi|225405817|ref|ZP_03761006.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
 gi|225042657|gb|EEG52903.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
          Length = 459

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 11/208 (5%)

Query: 1   MKQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +  Y + +R++  +L  +   I   ++A+ + K LQLANGAVY DE++   E+H  KI+A
Sbjct: 254 LNAYTELERKMILELPEDESDISVTSAAALSNKLLQLANGAVY-DEDRTVHEIHGCKIEA 312

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAH 115
              +IE     P +V Y++  D  R+ KA    +   ++   P    +WN  KI +L  H
Sbjct: 313 FLELIESLQGKPALVFYNYQHDRERILKALAGSKLRIRELKKPQDEDDWNARKIDILLTH 372

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS  +GLNLQ GGN +++F L W+ E + Q  +R+      + G    V +++L+   T
Sbjct: 373 PASSAYGLNLQQGGNHVIWFGLTWNYELYTQANKRL-----HRQGQTEKVIIHHLVCSGT 427

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
            DE V+Q L+ K  +Q+ ++ +LK    
Sbjct: 428 RDEDVMQALQRKDDVQNWVMESLKARIR 455


>gi|269120031|ref|YP_003308208.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613909|gb|ACZ08277.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 458

 Score =  230 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 11/206 (5%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y + ++E+  +L   GE I+  ++A+ T K LQL+NGAVY DE++   EVH+ KI+A 
Sbjct: 254 KAYDELEKEMILELIETGETIDVTSAAALTNKLLQLSNGAVY-DEDRKVHEVHNCKIEAF 312

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHP 116
             ++E  N  P +V Y F  D  R++KA  + +   ++      + +WN  +I +L +HP
Sbjct: 313 MELVEALNGQPALVFYSFQHDKDRIKKALSKLKLRVRELKTDQDVTDWNNREIDILLSHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +GLNLQ GGN +++F L W LE +QQ  +R+      + G    VF+++LI + T 
Sbjct: 373 ASSAYGLNLQRGGNHIIWFGLNWSLELYQQANKRL-----HRQGQTEKVFIHHLITEGTR 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           D  V+  L  K  IQ+ LLN+LK   
Sbjct: 428 DTDVMAALGDKGDIQESLLNSLKARI 453


>gi|160935260|ref|ZP_02082643.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441991|gb|EDP19688.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
          Length = 456

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 9/207 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + ++E   +L G+ I A ++A+   K LQLANGA Y D E +   +HD K+ AL 
Sbjct: 253 MRKYRELEKEKLLELDGKEITALSAAAVWGKLLQLANGAAY-DGEGNVIPLHDRKLDALA 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            I+E +   P++V Y+F  D  RL   F     RTL K    I++WNEG+IPLL A PAS
Sbjct: 312 EILEASGGHPVLVFYNFRHDYDRLMGRFKGYNPRTL-KSQQDIRDWNEGRIPLLLAQPAS 370

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLN+Q GG+I+V+F L   LE + Q   R+      + G   AV ++ LI + T+DE
Sbjct: 371 MGHGLNIQAGGHIIVWFGLNPSLELYLQANARL-----HRQGQTEAVIIHRLITKGTVDE 425

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+++L  K   QD L+ +LK     +
Sbjct: 426 DVVKKLWVKDETQDGLMESLKARIRRI 452


>gi|70726780|ref|YP_253694.1| hypothetical protein SH1779 [Staphylococcus haemolyticus JCSC1435]
 gi|68447504|dbj|BAE05088.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 452

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + +    I A + AS + K LQL+NGAVY D+E   + +HD K+  LE
Sbjct: 254 KLYDELEKYYILEDETDGTIVAQSGASLSQKILQLSNGAVYTDDED-VRHIHDRKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            II++A   PI++ Y+F  D  R+ + F    TLD D     +WN GK  +L AHPAS G
Sbjct: 313 EIIDEAQGQPILLFYNFKHDRDRILERFDDVLTLD-DKGYKDKWNSGKAKILLAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQTHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            Q L+ K   QD L+ A+K   
Sbjct: 427 YQALQNKELTQDELMKAIKARI 448


>gi|160898846|ref|YP_001564428.1| helicase-like protein [Delftia acidovorans SPH-1]
 gi|160364430|gb|ABX36043.1| helicase-like protein [Delftia acidovorans SPH-1]
          Length = 477

 Score =  227 bits (578), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 138/200 (69%), Gaps = 2/200 (1%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY +  REL  ++ G+ IEAF++ +K+ K LQ+A+GA Y D++  W  VHDEKI+AL+ 
Sbjct: 275 RQYDEMARELATEIDGQVIEAFSAGTKSQKLLQIASGAAYTDDQGAWALVHDEKIEALKS 334

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E+A   P++V YHF SDLAR++KAFP+ RTLD D    +++  G++ +L  HPAS GH
Sbjct: 335 VVEEALGMPLLVFYHFKSDLARIRKAFPKARTLD-DKGAKEDFEAGRLQMLVVHPASAGH 393

Query: 122 GLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           G++ LQ+G    VFFS  W  E   Q IERIG TRQ Q+G+ R V V+ L+A++T++E  
Sbjct: 394 GVDGLQHGTCQCVFFSTNWSAENDAQAIERIGPTRQMQSGYDRPVTVHRLVARDTVEESA 453

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           + RLR++ ++ + L   LKK
Sbjct: 454 MYRLRSRVSVDEALRQGLKK 473


>gi|325684273|gb|EGD26446.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 633

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+ DEKI+    
Sbjct: 434 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFDEKIECC-F 492

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 493 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 552

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 553 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 607

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 608 RHVLDSLKKKDLSQQALLAAVRR 630


>gi|300812688|ref|ZP_07093097.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496315|gb|EFK31428.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 636

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 437 KSYQQLKKDQVLDLPGQEISADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 495

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 496 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 555

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 556 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 610

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 611 RHVLDSLKKKDLSQQALLAAVRR 633


>gi|104773892|ref|YP_618872.1| hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422973|emb|CAI97646.1| Hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 638

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDSSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|116513899|ref|YP_812805.1| SNF2 family DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093214|gb|ABJ58367.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125562|gb|ADY84892.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 638

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|325662084|ref|ZP_08150703.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471747|gb|EGC74966.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 451

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 9/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            QY + + +     + E I A N+A+ + K  Q+ANGA+Y D       +HD K++ALE 
Sbjct: 254 AQYDEMREDYLLPYKEEAITAANAAALSGKLCQMANGAIYSDS-GEAVHIHDRKLEALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPAS 118
           IIE A   PI++ Y F  DL R+ +   Q +           I++WNEGK  +   HPAS
Sbjct: 313 IIEAAQG-PILLCYWFKHDLERITEKLEQLKVFYSRIVTEENIRKWNEGKYDVGLIHPAS 371

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ+  N +V+F L W LE +QQ   R+     RQ   +  V V +++   TIDE
Sbjct: 372 AGHGLNLQHSSNHIVWFGLTWSLELYQQTNARL----WRQGQKQDTVVVQHIVTAGTIDE 427

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            +L  L  K   Q  L++A+K  
Sbjct: 428 DILDALTHKDASQTRLIDAVKAR 450


>gi|313123514|ref|YP_004033773.1| superfamily ii DNA/RNA helicase, snf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280077|gb|ADQ60796.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 626

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ + A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 427 KSYQQLKKDQVLDLPGQELSADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 485

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL    +K   +    D  P  I+ WN+GKIP++   PA
Sbjct: 486 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 545

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 546 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 600

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 601 RHVLDSLKKKDLSQQALLAAVRR 623


>gi|258646424|ref|ZP_05733893.1| SNF2 domain protein [Dialister invisus DSM 15470]
 gi|260403827|gb|EEW97374.1| SNF2 domain protein [Dialister invisus DSM 15470]
          Length = 459

 Score =  221 bits (563), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 10/205 (4%)

Query: 2   KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y++ ++++  DL  +++ +  ++A+ + K  QLANGAVY D+   W+E+H++KI+A  
Sbjct: 254 RDYNELEKKMVLDLGDDHVLDVTSAAALSNKLQQLANGAVYTDDGG-WQEIHNDKIEAFM 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPA 117
            +IE+ N    IV Y+F  DL RL+ A  +     +         +WN GK+ +L AHPA
Sbjct: 313 ELIEQLNGKHAIVFYNFRHDLDRLRAALQKTNLHIRQLQTSADELDWNAGKVDILLAHPA 372

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +GLNLQ GGN +V+F L W LE +QQ  +R+      + G K  V V+ LI + T D
Sbjct: 373 STAYGLNLQDGGNHVVWFGLNWSLELYQQANKRL-----HRQGQKNRVIVHQLICEGTRD 427

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E + + L  K   Q  ++++LK   
Sbjct: 428 EDLARALLMKDAAQQYVMDSLKARV 452


>gi|71276170|ref|ZP_00652450.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71898329|ref|ZP_00680502.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|170730598|ref|YP_001776031.1| hypothetical protein Xfasm12_1485 [Xylella fastidiosa M12]
 gi|71163088|gb|EAO12810.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71731852|gb|EAO33910.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|167965391|gb|ACA12401.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 470

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 130/197 (65%), Gaps = 13/197 (6%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ SKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGTEVEAFNATSKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT----------RQRQAGFKRAVFVYY 169
           GHGLNLQ GGNIL FF  WW    +  ++    V           R+R A   R V  Y 
Sbjct: 377 GHGLNLQDGGNILAFFGHWWAQVRNGVLMRTCTVCGGSGTVPISDRKRAAALGRDVSTYC 436

Query: 170 LIAQNTIDELVLQRLRT 186
           +  +  + E +L++LR 
Sbjct: 437 MRWRG-LYEWLLEKLRA 452


>gi|227872572|ref|ZP_03990908.1| helicase [Oribacterium sinus F0268]
 gi|227841573|gb|EEJ51867.1| helicase [Oribacterium sinus F0268]
          Length = 449

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++ +   L+   I A ++   T K  Q ANGA+Y DE+K    +HD K++   
Sbjct: 248 LKAYQELEKNMVLSLEESEITAVSAGVLTNKLSQCANGAIY-DEDKVVNHIHDCKLERFT 306

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPA 117
            ++E+ N    +V Y+F  D  R+ KA  +     ++   P   ++WN+GKI +L AHPA
Sbjct: 307 ELVEELNGESALVFYNFKHDKDRILKALEKSGLEVREFKSPKDEEDWNKGKIDILLAHPA 366

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +G+NLQYGG  +++FSL W  E + Q   R+      + G ++ V V+ L+  +T+D
Sbjct: 367 STAYGINLQYGGRNIIWFSLPWSYELYAQANARLF-----RQGQEKPVIVHELLCTDTVD 421

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
             + + L  K   Q+ +L ALK  
Sbjct: 422 HDIKKSLSEKGQNQEDVLRALKAR 445


>gi|307317157|ref|ZP_07596598.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
 gi|306897245|gb|EFN27990.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
          Length = 522

 Score =  217 bits (553), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 123/206 (59%), Gaps = 14/206 (6%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDE 54
           MK+Y +F++ L       ++EA +    T K LQ ANG +Y      ++ ++    +HD 
Sbjct: 319 MKEYREFEKTLVAQ--NYDVEAVSRGVLTGKLLQFANGGLYRLDEDVFNAKRETIAIHDY 376

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K+KALE I+E+A    ++VAY F  D  R++K FP+    D++P  +++WN GKI +  A
Sbjct: 377 KLKALESIVEEAAGQNVLVAYSFQFDKDRIRKKFPKAVFFDEEPNFVKKWNAGKIQMGVA 436

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQ 173
           HPAS GHGLNLQ+GG+I V+F L W LE   Q   R+      + G K  +VF++ +IA+
Sbjct: 437 HPASIGHGLNLQHGGHIQVWFGLTWSLELWDQFNRRLA-----RPGQKNHSVFIHVIIAK 491

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+DE   + L+ K   QD ++NA++
Sbjct: 492 GTMDEAQYETLQIKGVTQDQIMNAVR 517


>gi|282911093|ref|ZP_06318895.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324788|gb|EFB55098.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 455

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      ++++I  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIITDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|312438077|gb|ADQ77148.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH60]
          Length = 455

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+E   + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDED-VRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      ++++I  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIITDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|283469596|emb|CAQ48807.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D     +E+HD+K++ LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTD-NGDVREIHDKKLEKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|156603990|ref|YP_001429936.1| hypothetical protein SPTP3102_gp41 [Staphylococcus phage tp310-2]
 gi|154818076|gb|ABS87503.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 455

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + E  + A N AS + K LQL+NGAVY D+    +E+HD+K++ LE
Sbjct: 257 KLYDELEKHYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDGD-VREIHDKKLEKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILERFKEATTLE-DSNYKERWNSGNIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YEALQNKELTQEELMKAIKARI 451


>gi|15838886|ref|NP_299574.1| hypothetical protein XF2295 [Xylella fastidiosa 9a5c]
 gi|9107459|gb|AAF85094.1|AE004041_6 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 470

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 125/193 (64%), Gaps = 13/193 (6%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT----------RQRQAGFKRAVFVYY 169
           GHGLNLQ GGNIL FF  WW    +  ++    V           R+R A   R V  Y 
Sbjct: 377 GHGLNLQDGGNILAFFGHWWAQVRNGVLMRTCTVCGGSGTVPISERKRAAALGRDVSTYC 436

Query: 170 LIAQNTIDELVLQ 182
              +  + E +L 
Sbjct: 437 KKWRG-VYEWLLD 448


>gi|268610658|ref|ZP_06144385.1| SNF2 domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 417

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 7/174 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y K ++E    L  +++ A N+A    K +QLA+G VY D+      +H+ K+ ALE
Sbjct: 249 IKAYRKLEKEYTLPLLHDDVSAANAAVLCGKLVQLASGCVY-DDGGTPSIIHNRKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY +  +  R++  F       K    I +WN+GKIP+    P+S G
Sbjct: 308 DLLEAQNGKPVLVAYWYQHERERIKARFDVREI--KTDQDIADWNDGKIPVALIQPSSAG 365

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           HGLNLQ GG+ +++F++ W LE +QQ   R+     RQ      V +++L A  
Sbjct: 366 HGLNLQDGGSTIIWFTMPWSLELYQQTNARL----WRQGQNADTVVIHHLTAAG 415


>gi|66395514|ref|YP_239930.1| ORF006 [Staphylococcus phage 42E]
 gi|215401142|ref|YP_002332397.1| putative helicase [Staphylococcus phage phiSauS-IPLA35]
 gi|62636007|gb|AAX91118.1| ORF006 [Staphylococcus phage 42E]
 gi|215260493|gb|ACJ64623.1| gp34 [Staphylococcus phage phiSauS-IPLA35]
          Length = 455

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + +  + A N AS + K LQL+NGAVY D     +E+HD+K++ LE
Sbjct: 257 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTD-NGDVREIHDKKLEKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +QQ   R+      + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQQANARL-----YRQGQNHTTIMHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 430 YKALQNKELTQEELMKAIKARIAK 453


>gi|323438429|gb|EGA96184.1| phage helicase [Staphylococcus aureus O11]
          Length = 452

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 117/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + + +  + A N AS + K LQL+NGAVY D+    + +HD+K++ LE
Sbjct: 254 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTDDGD-VRGIHDKKLEKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILERFKEATTLE-DSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V F L W LE +QQ   R+      + G      +++L+  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVSFGLTWSLELYQQANARL-----YRQGQNHTTIIHHLMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L+ K   Q+ L+ A+K     
Sbjct: 427 YKALQNKELTQEELMKAIKARIAK 450


>gi|91214213|ref|NP_919000.2| helicase [Burkholderia phage BcepNazgul]
 gi|88604906|gb|AAQ63367.2| helicase [Burkholderia phage BcepNazgul]
          Length = 522

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 117/200 (58%), Gaps = 7/200 (3%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y KF+R+   DL  G  IEA  +A+   K LQLA+G VY D EK    VHD KI+ L 
Sbjct: 307 AMYKKFERDFILDLPDGTEIEAETAAALNQKLLQLASGCVY-DAEKKTHWVHDHKIEDLT 365

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E+ N  P++VAY F S L RL+KAFP+ R +D +   + +WN+GKI +L  HPAS  
Sbjct: 366 QLVEELNGEPLLVAYWFKSSLERLKKAFPRARVMDAEGKLVGDWNKGKIKILLVHPASVA 425

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLN+Q GG+ L  + +++ LE + Q+I R+      + G +  V V++     T+D++ 
Sbjct: 426 HGLNMQKGGHHLYIYDIFYSLELYLQLIGRLA-----RQGQRHVVRVHHATMIGTVDDVA 480

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           +  L  K   QD L   L++
Sbjct: 481 VSSLTRKRNAQDDLFVRLRR 500


>gi|213692059|ref|YP_002322645.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523520|gb|ACJ52267.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 464

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  + A N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 264 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 323

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 324 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHEQG-VLEEWRNGRVPLLAAHPQAA 381

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+      + G KR V V+ L+  NT+D  
Sbjct: 382 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL-----HRQGQKRTVRVHRLLESNTVDRR 436

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 437 KLDVLTGRMMLHEAVMDAVEGETTGI 462


>gi|320458171|dbj|BAJ68792.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 460

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  + A N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHEQG-VLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+      + G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL-----HRQGQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 433 KLDVLTGRMMLHEAVMDAVEGETTGI 458


>gi|322691254|ref|YP_004220824.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456110|dbj|BAJ66732.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 460

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL  G  +   N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTVANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIISAADG-PVLVFYQFTDELERMRARFPGMREVHEQG-VLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  ++++Q  +R+      + G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDYRQACDRL-----HRQGQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++AL+ ET  V
Sbjct: 433 KLDVLTGRMMLHEAVMDALEGETAGV 458


>gi|322382458|ref|ZP_08056353.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153571|gb|EFX45960.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 10/182 (5%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            + K LQ+A+GAVY DEE+  KE+H+ K+ ALE I+E +   P++V Y++   L R+Q+ 
Sbjct: 280 LSNKLLQMASGAVY-DEERGVKEIHEAKLDALEDILEASQGKPVMVFYNYKHSLQRVQQR 338

Query: 88  FPQGRTLDKDP---CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN-ILVFFSLWWDLEE 143
           FPQ R L K       I +WN  KIPLL  HP S GHGLNLQ      +++F   W LEE
Sbjct: 339 FPQARILRKGKEGVQDITDWNTNKIPLLLLHPKSAGHGLNLQESNCQTVIWFDQIWSLEE 398

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ   R+      + G  R + V  L+A+ T+DE V++ +  K+T Q+ L+ A+K    
Sbjct: 399 FQQANARV-----YRQGQTRKIVVMQLVAEGTMDEEVVEAIDKKATGQEELMQAVKARIE 453

Query: 204 HV 205
            +
Sbjct: 454 RI 455


>gi|309702946|emb|CBJ02277.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 134

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/133 (63%), Positives = 112/133 (84%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           ++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GGN
Sbjct: 1   MLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGN 60

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V++R  +K T+
Sbjct: 61  ILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMERRNSKRTV 120

Query: 191 QDLLLNALKKETI 203
           QD+LL+A+KK  I
Sbjct: 121 QDILLDAMKKRGI 133


>gi|255994014|ref|ZP_05427149.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993682|gb|EEU03771.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
          Length = 467

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 14/205 (6%)

Query: 2   KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y KF+R        +      + A  +A  + K LQLA GA+Y ++ K +  VHD K+
Sbjct: 260 RAYAKFERGCVLRYLDDTDSASSVMASTAADLSGKLLQLAGGAIYQEDSKDYVTVHDTKL 319

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLF 113
           KAL  ++E  N   II+ Y+F  + ARL  AF   +    + K    I +WN GK+ +L 
Sbjct: 320 KALTELVEPLNE-NIIIFYNFLHEKARLCNAFSDFKGEVRVFKSGKDIADWNAGKVNILI 378

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPA+ G+GLNLQ GG  +++F L    E++ Q  +R+      + G +  VFV+ L+ +
Sbjct: 379 AHPAAMGYGLNLQQGGRRIIWFGLPQSYEQYAQANKRL-----HRQGQQDKVFVHRLVCK 433

Query: 174 NTIDELVLQRLRTKSTIQDLLLNAL 198
            T DE VL  L  K ++Q  LL++L
Sbjct: 434 GTRDEDVLSALAHKDSMQKYLLSSL 458


>gi|238898768|ref|YP_002924450.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466528|gb|ACQ68302.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 157

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 5/144 (3%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           +E +I++A   P++VAY++ SDLA ++  FP+   +     TI  WN GKIPLL AHPAS
Sbjct: 1   MEEMIQEAAGQPVLVAYNYQSDLALIKVRFPKAELIGHAADTIDRWNTGKIPLLLAHPAS 60

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGNI+V+F L W LE +QQ   R+      + G  R VF+++L+  ++ID 
Sbjct: 61  AGHGLNLQSGGNIIVWFGLNWSLELYQQFNARL-----HRQGQTRPVFIHHLVMNDSIDL 115

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            VL+ L  K   Q  LL+ALKK+ 
Sbjct: 116 TVLEALENKHITQKALLDALKKDI 139


>gi|325270384|ref|ZP_08136989.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987328|gb|EGC19306.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1326

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D  + WK +   K+ A  
Sbjct: 1107 MAMYEVRRRETEEKVRANAADKVSTLAEITRLRQMACSCSLVD--RKWK-LPSSKVLAFI 1163

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             + E  N      +V   F S L  +++A  + R           + +    +Q++  G+
Sbjct: 1164 DLAESLNDSGNRALVFSQFTSFLDEVRRAMDKARLPYLYLDGSTPMAQREKLVQDFQTGR 1223

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    QQ  +R       + G K+ V VY
Sbjct: 1224 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQQATDR-----AYRIGQKQEVTVY 1277

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  RTK  + D LL  
Sbjct: 1278 HLISQHTIEEKILRLHRTKRNLSDSLLEG 1306


>gi|125974159|ref|YP_001038069.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714384|gb|ABN52876.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 452

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y +  ++ Y +L    + A N  ++ ++  QL  G +  D+    ++V D K+KALE
Sbjct: 233 LKKYKELVKQSYTELSAGEVTATNILTRLLRLSQLTGGFIGSDDGGKIEQVSDAKLKALE 292

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            I+E +      ++V   F  ++  + +   +         G T D+     +   +   
Sbjct: 293 DILESSIQEGHKLVVIARFIPEIHAICRLLEKKNIGYACIYGATKDRQEQVNRFQYDPDC 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      + G K      Y
Sbjct: 353 MVFVGQIATAGLGITLT-AASTMVFYSLDYSMSNFEQTKARI-----HRVGQKNGCTYIY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA+ T+D  +L  LR K+ +  +L++  +K
Sbjct: 407 LIAKGTVDSKILTALRNKADLAKMLIDDYRK 437


>gi|315926199|ref|ZP_07922399.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620643|gb|EFV00624.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 478

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y+    + + +L+ + +   N  +K ++  QL  G +  DE    ++V   K+  LE
Sbjct: 268 LKLYYSLVEDSFAELEEDEVTTTNILTKLLRLSQLTGGFISGDESDVPEQVSTAKLSVLE 327

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            II+ A      +++   F  +L  +     +         G   +++    Q  N+  +
Sbjct: 328 DIIDSAADEGRKLVIIARFVPELHAICSLLDKKGINHSLIMGGVKNREEQISQFQNDPDV 387

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +  ++Q   RI      +AG K      +
Sbjct: 388 TVFVGQIATAGLGITLT-ASSTMVFYSLDYSMSTYEQTKARI-----HRAGQKYPCTYIH 441

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA  T+D+ VL+ LR+K+ +   L++  ++
Sbjct: 442 LIADGTVDQKVLRALRSKANLAKTLVDDYRR 472


>gi|269975285|gb|ACZ55509.1| helicase [Staphylococcus phage SA1]
          Length = 491

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 37/230 (16%)

Query: 3   QYHKFQRELYCDLQGEN----------IEAFNSASKTVKCLQLANGAVY-------YDEE 45
           +Y   + E   ++  E+          IEA  +AS   K LQ+ +G +Y        +++
Sbjct: 246 RYRMMEEESLVEIMPEDFDEHLDDPIVIEAEQAASLQSKLLQMCSGFIYDTKIVGITEDD 305

Query: 46  KHWKE-----VHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           K  K+     +HD K  ALE ++E       +++AYHF   L RL++ F     +D D  
Sbjct: 306 KVIKQKDTYRLHDLKFDALEELLETTLADKNVLIAYHFKPTLERLKERFKDLVVMDDDGK 365

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I++WN GKI LL AHP S GHGLNLQ+GG+++V+    W LE   Q   R+      + 
Sbjct: 366 CIKKWNAGKIRLLAAHPQSAGHGLNLQHGGHVIVYIDNPWSLERFLQFNGRL-----HRQ 420

Query: 160 GFKRAVFVYYLIA---------QNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K  V +Y   A           T D++V+Q L  K  +QD     L++
Sbjct: 421 GQKFPVTIYQFKAMLRTPNGLLAETADDVVIQALVEKEDVQDAFFALLER 470


>gi|288802766|ref|ZP_06408204.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
 gi|288334916|gb|EFC73353.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
          Length = 1343

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    +     +  ++ ++     Q+A      D  K WK +   K+ A  
Sbjct: 1124 MAMYEVKRRETEAKILENKADKVSTLAEITHLRQMACSCSLVD--KRWK-LPSSKVLAFI 1180

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             + E  N      +V   F S    ++KA    +           +      ++E+  GK
Sbjct: 1181 DLAESLNDSGNRALVFSQFTSFFEEIKKAMETAKLPYLYLDGSTPMSMREKLVKEFQSGK 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    QQ  +R       + G K+ V VY
Sbjct: 1241 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQQATDR-----AYRIGQKQDVTVY 1294

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1295 RLISQHTIEEKILRLHKTKRNLSDSLLEG 1323


>gi|223986447|ref|ZP_03636451.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
 gi|223961599|gb|EEF66107.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
          Length = 471

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 17/210 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y     E + +L    + A N  ++ ++  QL  G +  D+    ++V + K+  LE
Sbjct: 261 MKLYKNLVDESFAELSDGEVTATNVLTRLLRLNQLTGGFICSDDSSKAEQVSNAKMSVLE 320

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            I++ +      +++   F  +L  + K   +         G   ++D    Q  N+ ++
Sbjct: 321 DIVDASLQEGKKLVIIARFIPELHAICKMLGKKGIRHSLIMGGVNNRDEQVAQFQNDPEV 380

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      +AG K      Y
Sbjct: 381 SVFVGQIATAGMGITLT-AASTMVFYSLDYSMSNFEQTKARI-----HRAGQKFPCTYLY 434

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           L A+ TID  VL+ L++K+++   L++  +
Sbjct: 435 LTAEGTIDTKVLKALKSKASLAKTLVDDYR 464


>gi|302345308|ref|YP_003813661.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
 gi|302150135|gb|ADK96397.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
          Length = 1343

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    +     +  ++ ++     Q+A      D  K WK +   K+ A  
Sbjct: 1124 MAMYEVKRRETEAKILENKADKVSTLAELTHLRQMACSCSLVD--KKWK-LPSSKVLAFI 1180

Query: 61   VIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             + E  N +    +V   F S    ++KA  + +           +      ++E+  GK
Sbjct: 1181 DLAESLNDSDNRALVFSQFTSFFEEVRKAMDKAKLPYLYLDGSTSMAMREKLVKEFQTGK 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N +V    WW+    QQ  +R       + G ++ V VY
Sbjct: 1241 CPFFLISLKAGGLGLNLT-GANYVVHLDPWWNPAIEQQATDR-----AYRIGQQQDVTVY 1294

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1295 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1323


>gi|301321598|gb|ADK68988.1| Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
          Length = 735

 Score =  170 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 28/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--------------EVHDEKIKAL 59
           D     IEA N      K LQ A GAVY D +K                 ++H  K   +
Sbjct: 512 DASAHYIEAVNGGVLRNKLLQFAAGAVYIDLDKGADGYAKATSLTSRPTLQLHSAKFDKV 571

Query: 60  EVIIEK----ANAAPIIVAYHFNSD----LARLQKA-FPQGRTLDKDPCTIQEWNEGKIP 110
             I ++         +++AY F+ +    + RL++A +   R  +  P T + WN G+IP
Sbjct: 572 IDICDQHFATGGDGSVLIAYRFDFEKTILIDRLRRAGYLGARAYNGMPDTKKAWNRGEIP 631

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++  HPAS GHGLNLQ+GG+ L++ +L    E + Q   R+      + G  + V V+ +
Sbjct: 632 VMLVHPASAGHGLNLQFGGHTLIWTTLPDSNEHYGQTPARLN-----RLGQTKPVVVHTI 686

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + +NTID  +   L  K   Q+ L+ A + E
Sbjct: 687 LTENTIDMAMPGALSDKQASQERLMQATRSE 717


>gi|303238092|ref|ZP_07324632.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302481727|gb|EFL44782.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 1337

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M +Y   + +    ++ E   + ++ ++  +  QLA      D  K W+ V   K  A  
Sbjct: 1119 MARYELQRAQAEAMVEVEKNVSVSTLAEITRLRQLACSTALVD--KKWEGVSS-KTLAFI 1175

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S  A ++K   +             + K    ++E+ EG 
Sbjct: 1176 DLAESLNDSGNRALVFSQFTSYFAEIKKMMDKTHLPYLYLDGSTPMKKREQLVREFQEGD 1235

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    QQ  +R       + G ++ V VY
Sbjct: 1236 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQQATDR-----AYRIGQEQDVTVY 1289

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LIAQ+TI+E +L+  +TK  + D LL  
Sbjct: 1290 RLIAQHTIEEKILRLHKTKRDLADSLLEG 1318


>gi|19552947|ref|NP_600949.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390624|ref|YP_226026.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324512|dbj|BAB99136.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325962|emb|CAF20125.1| Superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 613

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 58/237 (24%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------------------- 50
           I A ++A+  +K LQ A GAVY D E   +                              
Sbjct: 382 ISAVHAATLRMKLLQYAGGAVYVDPEDSAQSQDLDASTARDVIDATNTAMTTITSRPTMI 441

Query: 51  VHDEKIKALEVII--EKANAAPI-----------------IVAYHFNSDLARLQKAFPQG 91
           VH  K++ +  I+        P+                 +VAY F SD   L     Q 
Sbjct: 442 VHLHKVRKVIEILCNPALGGEPVNIDQDETGKQVYTPTPTLVAYRFISDKEILLHYLAQA 501

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   D  P  +  WN G+IP+L   PAS GHGLN Q+GG+ LV+++L  + E + Q
Sbjct: 502 GVQGVEVFDGSPDMLSRWNAGRIPVLLLQPASAGHGLNFQHGGHRLVWYNLPDNNEHYMQ 561

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              R+      + G K  V ++ +I  +T D  +   L  K+  Q  L++A++++ +
Sbjct: 562 ANARL-----HRIGQKNPVTIHRIITADTYDANMPAILAGKANRQQRLIDAVRRDPV 613


>gi|158320324|ref|YP_001512831.1| helicase domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158140523|gb|ABW18835.1| helicase domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 419

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +  ++ Y  L+   + A N  +K ++  QL  G +  D+    K++   K+ AL+ 
Sbjct: 211 KLYKRILKDSYVQLEKGEVTAQNLLTKLLRLSQLTGGFIGADD-GTIKQISKAKLDALKE 269

Query: 62  IIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIP 110
           IIE        ++V   F  ++  ++    +         G   D+     +   E  + 
Sbjct: 270 IIEDMKDAGKKLVVFARFLPEINAIKNMLDEMEISYSYITGEVKDRGEEVRKFQEEDGVR 329

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +  A   + G G+ L +  + +VF+SL ++   + Q   RI      + G K      +L
Sbjct: 330 VFIAQIQTAGLGITL-HAADTVVFYSLDFNYANYSQARARI-----HRIGQKNTCTYIHL 383

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           IA  T+DE +L+ L  K  I   +++
Sbjct: 384 IAPGTVDEKILKALEKKENIAKQIVD 409


>gi|227544270|ref|ZP_03974319.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|227185750|gb|EEI65821.1| possible helicase [Lactobacillus reuteri CF48-3A]
          Length = 224

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 3/128 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y +   +L    QG+ I+A N+AS + K  Q+ANG VY D+++   ++H  K+ ALE 
Sbjct: 100 AIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVY-DDQQQIVQIHQRKLDALED 158

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL +++  F       K P  IQ+WN GKIPL   HPAS GH
Sbjct: 159 LVEAANGKPVLVAYWFKHDLIQIKSRFKVREI--KTPRDIQDWNAGKIPLALIHPASAGH 216

Query: 122 GLNLQYGG 129
           GLNLQ GG
Sbjct: 217 GLNLQAGG 224


>gi|327313991|ref|YP_004329428.1| SNF2 family N-terminal domain-containing protein [Prevotella
            denticola F0289]
 gi|326946179|gb|AEA22064.1| SNF2 family N-terminal domain protein [Prevotella denticola F0289]
          Length = 1340

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D  + WK +   K+ A  
Sbjct: 1121 MAMYEVRRRETEERVRANVGDKMSTLAEITRLRQMACSCSLVD--RKWK-LPSSKVLAFI 1177

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             + E  +      +V   F S    +++A  + +           +      ++++  GK
Sbjct: 1178 DLAESLDESGNRALVFSQFTSFFEEVKQAMDKAKLSYLYLDGSTPMAMREKLVKDFQTGK 1237

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    QQ  +R       + G K+ V VY
Sbjct: 1238 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQQATDR-----AYRIGQKQNVTVY 1291

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1292 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1320


>gi|325853079|ref|ZP_08171228.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
 gi|325484453|gb|EGC87374.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
          Length = 1302

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D  + WK +   K+ A  
Sbjct: 1083 MAMYEVRRRETEERVRANVGDKMSTLAEITRLRQMACSCSLVD--RKWK-LPSSKVLAFI 1139

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             + E  +      +V   F S    +++A  + +           +      ++++  GK
Sbjct: 1140 DLAESLDESGNRALVFSQFTSFFEEVKQAMDKAKLSYLYLDGSMPMAMREKLVKDFQTGK 1199

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    QQ  +R       + G K+ V VY
Sbjct: 1200 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQQATDR-----AYRIGQKQNVTVY 1253

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1254 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1282


>gi|160944098|ref|ZP_02091328.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444774|gb|EDP21778.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
          Length = 562

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 98/213 (46%), Gaps = 21/213 (9%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + +R  + +L  G++I A    +K ++ +QL  G    D+    ++V+  K+ ALE
Sbjct: 353 KLYEQLRRSSFAELDSGDSITATTVLTKMLRLMQLTGGFTQTDDGTRPQQVNTAKLDALE 412

Query: 61  VIIEK---ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----IQEW-NE 106
            I++       + +++   F +++A +     +K  P G      P       + ++   
Sbjct: 413 DILDDYVLETGSKLVIFARFRAEIAAIENALRKKGIPYGSIYGDVPQAERGKIVDDFQQN 472

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +  A   + G G+ L +  ++ VF+S+ ++   + Q + RI      + G    V 
Sbjct: 473 PEAKVFVAQIQTAGLGITL-HAASMAVFYSIDYNYANYAQALARI-----HRIGQHNPVT 526

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +L+ +++ID+ VL  L  K  I   ++++ +
Sbjct: 527 YIHLLVEDSIDDKVLAALENKEDIAKSIVDSWR 559


>gi|330889124|gb|EGH21785.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 914

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|302184809|ref|ZP_07261482.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 880

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 677 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 736

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 737 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 794

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 795 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 849

Query: 196 NA 197
           + 
Sbjct: 850 DG 851


>gi|167630922|ref|YP_001681421.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
 gi|167593662|gb|ABZ85410.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
          Length = 449

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y    R+ Y +L    + A N  ++ ++  Q+  G +   E    + V   K +ALE
Sbjct: 233 MKIYRDLVRDSYAELGKGEVTATNILTRLLRLSQITGGFIGGGEGGPVQRVSTAKEEALE 292

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
            IIE    +   +++   F  ++  + +   +         G   D++       N  ++
Sbjct: 293 DIIEDVLQSGKKLVIIARFIPEINAICRLLEKKGIRYSLLMGGVKDREEQVSAFQNGPEV 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      + G K      Y
Sbjct: 353 QVFVGQIATAGLGVTLT-AASTMVFYSLDYSMSNFEQARARI-----HRVGQKENCTYLY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           L A+ T+DE VL+ LR K+ +  +L++  + 
Sbjct: 407 LTAKGTVDEKVLKALRDKADLARMLVDDYRS 437


>gi|330954490|gb|EGH54750.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae Cit
           7]
          Length = 914

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|330897626|gb|EGH29045.1| SNF2-related:helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 559

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 356 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 415

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 416 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 473

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 474 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 528

Query: 196 NA 197
           + 
Sbjct: 529 DG 530


>gi|66045135|ref|YP_234976.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255842|gb|AAY36938.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
          Length = 914

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|301381674|ref|ZP_07230092.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato Max13]
          Length = 918

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|330878594|gb|EGH12743.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 918

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|330961339|gb|EGH61599.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 885

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 682 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 741

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 742 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 799

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 800 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 854

Query: 196 NA 197
           + 
Sbjct: 855 DG 856


>gi|330967945|gb|EGH68205.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 918

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|331019536|gb|EGH99592.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 918

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|213967360|ref|ZP_03395508.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|302058432|ref|ZP_07249973.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131163|ref|ZP_07257153.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927661|gb|EEB61208.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 918

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|28869303|ref|NP_791922.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852544|gb|AAO55617.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 918

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V +D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|330973232|gb|EGH73298.1| SNF2-related:helicase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 880

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 677 LLKLRQVCCDLRLVNQDLPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 736

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 737 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 794

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 795 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 849

Query: 196 NA 197
           + 
Sbjct: 850 DG 851


>gi|282880921|ref|ZP_06289612.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
 gi|281305144|gb|EFA97213.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
          Length = 1254

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +  Y   +++       E     ++ S+  K  Q+A      D  K WK+    K+    
Sbjct: 1036 LAMYELHRKKAEELALAEEGVKLSTLSEITKLRQMACSISLVD--KTWKKTSS-KLSTFI 1092

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S LA +++   +             + K    + E+ +G 
Sbjct: 1093 ALAESLNDSGGRALVFSQFTSFLAEVRQVMDKIKLPYLYLDGATPIKKREEIVDEFQKGN 1152

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL    N ++    WW+    QQ  +R       + G +  V VY
Sbjct: 1153 YPFFLISLKAGGLGLNLT-AANYVIHLDPWWNPAIEQQATDR-----AYRIGQRNDVTVY 1206

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LIAQ+TI+E +++  +TK  + D LL  
Sbjct: 1207 HLIAQHTIEEKIIRLHKTKRDLADSLLEG 1235


>gi|71733698|ref|YP_274080.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554251|gb|AAZ33462.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 914

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|237797684|ref|ZP_04586145.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020534|gb|EGI00591.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 918

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 715 LLKLRQVCCDLRLVNQDMPANSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 774

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 775 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 832

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 833 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 887

Query: 196 NA 197
           + 
Sbjct: 888 DG 889


>gi|320324786|gb|EFW80858.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330986243|gb|EGH84346.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013173|gb|EGH93229.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 914

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|289624075|ref|ZP_06457029.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869863|gb|EGH04572.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 914

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|298486414|ref|ZP_07004475.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159042|gb|EFI00102.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 914

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|289648568|ref|ZP_06479911.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 914

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|42766595|gb|AAS45429.1| prophage-encoded helicase [Selenomonas ruminantium]
          Length = 126

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 7/126 (5%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           Y F  +  R+++         +    I +WN GKIP+   HPAS GHGLNLQ GG+IL++
Sbjct: 1   YWFKHEAERIRERLKVREI--QTSRDIADWNAGKIPVALIHPASAGHGLNLQEGGSILIW 58

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           FSL W LE +QQ   R+      + G K  V + ++  + TID  V++ L  K   Q  L
Sbjct: 59  FSLTWSLELYQQTNARL-----YRQGQKDTVSIIHITTEGTIDGDVMKALERKDKTQTAL 113

Query: 195 LNALKK 200
           + A+K 
Sbjct: 114 IEAVKA 119


>gi|330982693|gb|EGH80796.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 280

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 77  LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 136

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 137 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 194

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 195 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 249

Query: 196 NA 197
           + 
Sbjct: 250 DG 251


>gi|66392086|ref|YP_239310.1| possible DNA helicase [Xanthomonas phage Xp15]
 gi|62529196|gb|AAX84879.1| possible DNA helicase [Xanthomonas phage Xp15]
          Length = 587

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 17/205 (8%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K + +L  + +   I A N+A K +K LQ+A+GAV  DE +  K     +  AL  
Sbjct: 382 KMYEKMKSDLLVEYEAGEITAVNAAVKAMKLLQIASGAVKDDEGRIVKVDASTREDALWE 441

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNEGKIPL 111
           I E      +++   F + +  L   F     +  T++ D         +Q++ +  + +
Sbjct: 442 IFEGTGETKLVIFAAFRATIDHLVGYFQDRNVKVATINGDVPHALRAKHVQDFQDSDLQV 501

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L   P S  HG+ L      +V++SL    E + Q   RI      +AG  R   +Y+LI
Sbjct: 502 LIIQPQSSAHGITLT-ASCTIVWYSLVPSGEIYVQANGRIT-----RAGQSRKQTIYHLI 555

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
                +  VL  L  K +    LL 
Sbjct: 556 GCRP-ERHVLDILEGKVSTSQNLLE 579


>gi|323340857|ref|ZP_08081108.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
 gi|323091708|gb|EFZ34329.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
          Length = 975

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 30/214 (14%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEK 55
            Y     EL  +L  ++ +          +K  K  Q+      VY D +         K
Sbjct: 756 LYQAMVNELRTELSQKSADEFKQSKIEILAKLTKIRQICCDPSLVYSDYDGE-----SGK 810

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
                 +IE A      IIV   F S L+ L+K   Q +            ++    ++E
Sbjct: 811 TDNCMELIESALSGGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEE 870

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +N+  +P+      + G GLNL  G ++++ +  WW+     Q  +R       + G  +
Sbjct: 871 FNQNDVPIFLISLKAGGTGLNL-VGADVIIHYDPWWNEAAQNQATDR-----AHRIGQTK 924

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI ++TI+E +L+    KS + D +L+ 
Sbjct: 925 NVLVYKLIVKDTIEEKILKMQEQKSKLADDILSG 958


>gi|330944324|gb|EGH46382.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 468

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 20/180 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 296 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 355

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 356 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 413

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 414 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALASGVL 468


>gi|323441318|gb|EGA98983.1| phage helicase [Staphylococcus aureus O46]
          Length = 128

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 6/131 (4%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            Y+F  D  R+ + F +  TL+ D    + WN G I LL AHPAS GHGLNLQ GG+I+V
Sbjct: 2   FYNFKHDKERILERFKEATTLE-DSNYKERWNSGNIKLLIAHPASAGHGLNLQQGGHIIV 60

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +F L W LE +QQ   R+      + G      +++L+  NTID+ V + L+ K   Q+ 
Sbjct: 61  WFGLTWSLELYQQANARL-----YRQGQNHTTIIHHLMTDNTIDQRVYKALQNKELTQEE 115

Query: 194 LLNALKKETIH 204
           L+ A+K     
Sbjct: 116 LMKAIKARIAK 126


>gi|320329151|gb|EFW85148.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 914

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V      + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 711 LLKLRQVCCDLRLVNQGMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 770

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 771 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 828

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 829 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 883

Query: 196 NA 197
           + 
Sbjct: 884 DG 885


>gi|330881511|gb|EGH15660.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 337

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V      + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 134 LLKLRQVCCDLRLVNQGMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 193

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 194 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 251

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +L
Sbjct: 252 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVL 306

Query: 196 NA 197
           + 
Sbjct: 307 DG 308


>gi|315650529|ref|ZP_07903595.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
 gi|315487184|gb|EFU77500.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
          Length = 1142

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)

Query: 26   ASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
             ++  K  Q+      ++ D           K+     +++        I++   F+S L
Sbjct: 949  LAEITKLRQICCDPNLIFDDYSGE-----SAKLDTCIDLVKSGIEAGHKILLFSQFSSML 1003

Query: 82   ARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              + K F + +            DK    + ++N     +      + G GLNL  G +I
Sbjct: 1004 DIISKRFEKEKITSFMITGSTPKDKRLTLVNKFNHDDTNVFLISLKAGGTGLNLT-GADI 1062

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ +  WW+     Q  +R       + G K  V VY LIA+ TI+E +++   +K  + 
Sbjct: 1063 VIHYDPWWNFAAQNQATDR-----AHRIGQKNTVTVYRLIAKGTIEERIVKLQESKKDLA 1117

Query: 192  DLLLN 196
            D +LN
Sbjct: 1118 DRVLN 1122


>gi|46449909|gb|AAS96558.1| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1055

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 836  RKLKEQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKLDMPGFSTNLPSGKFDAFK 895

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N   I
Sbjct: 896  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQISGTPFCYLDGTSKDRFEQVDKFNNSPDI 955

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 956  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1009

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI QNT++E +L+    K  + + ++
Sbjct: 1010 LICQNTVEEKILKLQDMKRGVAEAII 1035


>gi|120602191|ref|YP_966591.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|304569715|ref|YP_011298.2| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562420|gb|ABM28164.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|311234232|gb|ADP87086.1| SNF2-related protein [Desulfovibrio vulgaris RCH1]
          Length = 1071

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 852  RKLKEQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKLDMPGFSTNLPSGKFDAFK 911

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N   I
Sbjct: 912  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQISGTPFCYLDGTSKDRFEQVDKFNNSPDI 971

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 972  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1025

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI QNT++E +L+    K  + + ++
Sbjct: 1026 LICQNTVEEKILKLQDMKRGVAEAII 1051


>gi|160942559|ref|ZP_02089806.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
 gi|158446143|gb|EDP23146.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1098

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +        S++K   CL+L   AV      H   +  +    LE++ ++ + 
Sbjct: 910  REICCDPRLVADNWTGSSAKLDACLELVTEAV---AGGHRILLFSQFTSMLELLAKRLDE 966

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A +    HF      LQ + P+          ++ +N+G+  +      + G GLNL   
Sbjct: 967  AGV---SHFT-----LQGSTPKPV----RAEQVRRFNQGEADVFLISLRAGGTGLNLT-A 1013

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW+L    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1014 ADIVIHYDPWWNLAAQNQATDR-----AYRIGQRNPVQVYRLIAQDTIEEKIVELQQAKQ 1068

Query: 189  TIQDLL 194
            ++ D +
Sbjct: 1069 SLADTV 1074


>gi|120555512|ref|YP_959863.1| SNF2-related protein [Marinobacter aquaeolei VT8]
 gi|120325361|gb|ABM19676.1| SNF2-related protein [Marinobacter aquaeolei VT8]
          Length = 1086

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 22/201 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L  + +G            +K  Q+       + E+        K+ +L  ++E
Sbjct: 875  DKRIRKLLAE-KGAARSQIEILDALLKLRQICCHPALLNPEETA---GSAKLDSLMEMLE 930

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLF 113
            +       +I+   F S LA ++              G+T D+    ++ +  G+ P+  
Sbjct: 931  QLLDEGRKVIIFSQFTSMLALIETTLKAAGIGYEKLTGQTRDR-ATPVKRFQNGESPVFL 989

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    QQ  +R       + G  + VFVY LI +
Sbjct: 990  ISLKAGGTGLNLT-AADCVIHYDPWWNPAAEQQATDRAW-----RIGQDKPVFVYRLITE 1043

Query: 174  NTIDELVLQRLRTKSTIQDLL 194
             T++E +      KS + D L
Sbjct: 1044 GTVEERIQALQARKSQLADGL 1064


>gi|304310231|ref|YP_003809829.1| predicted helicase [gamma proteobacterium HdN1]
 gi|301795964|emb|CBL44165.1| predicted helicase [gamma proteobacterium HdN1]
          Length = 990

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPI 71
            G      +     ++  QL          +  K +   K+      LE ++E+     I
Sbjct: 769 DGHETTRISILDALLRLRQLCCDPRLL-PLEDAKSLPSAKLDHLLVMLEELVEE--GRRI 825

Query: 72  IVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V   F S LA +++A  Q +                ++ +     P+      + G GL
Sbjct: 826 LVFSQFTSMLALIREALQQRKIPHLLLTGATQNRQALVERFQAENEPIFLISLKAGGVGL 885

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++ F  WW+    +Q  +R       + G  + VFVY LI + TI+E ++  
Sbjct: 886 NLT-AADTVIHFDPWWNPAAEEQATDR-----AYRIGQDKPVFVYKLICEGTIEEKIVLL 939

Query: 184 LRTKSTIQDLLLNALK 199
              K  +QD +  A +
Sbjct: 940 QERKRALQDAITGAAE 955


>gi|295103966|emb|CBL01510.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1098

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +        S++K   CL+L   AV      H   +  +    LE++ ++ + 
Sbjct: 910  REICCDPRLVADNWTGSSAKLEACLELVTEAV---AGGHRILLFSQFTSMLELLAKRLDE 966

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A +    HF      LQ + P+          ++ +N+G+  +      + G GLNL   
Sbjct: 967  AGV---SHFT-----LQGSTPKPV----RAEQVRRFNQGEADVFLISLRAGGTGLNLT-A 1013

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW+L    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1014 ADIVIHYDPWWNLAAQNQATDR-----AYRIGQRNPVQVYRLIAQDTIEEKIVELQQAKQ 1068

Query: 189  TIQDLL 194
            ++ D +
Sbjct: 1069 SLADTV 1074


>gi|212702386|ref|ZP_03310514.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
 gi|212674185|gb|EEB34668.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
          Length = 1085

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 866  RKLRAQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKIDLPGFSNNLPSGKFDAFK 925

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             ++ +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 926  DMVMEIVEGGHKVLVFSQFVQMLQIIRQWLEFSQIPFCYLDGASKDRFEQVDRFNNSPDI 985

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 986  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1039

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI QNT++E +L+    K  + + ++
Sbjct: 1040 LICQNTVEEKILKLQEAKRGVAEAII 1065


>gi|78356607|ref|YP_388056.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219012|gb|ABB38361.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
          Length = 1068

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+      +  D       +   K  A +
Sbjct: 849  KKLKDQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLPSGKFDAFK 908

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  +   I
Sbjct: 909  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINDMPFCYLDGTSKDRFDQVDRFNDSPDI 968

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G K  VF Y 
Sbjct: 969  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----AHRIGQKNQVFAYK 1022

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I QNT++E +L+    K  + D ++
Sbjct: 1023 MICQNTVEEKILKLQDMKRGVADAII 1048


>gi|218885893|ref|YP_002435214.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756847|gb|ACL07746.1| Non-specific serine/threonine protein kinase [Desulfovibrio vulgaris
            str. 'Miyazaki F']
          Length = 1069

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+      +  D       +   K  A +
Sbjct: 850  RKLKEQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N  +I
Sbjct: 910  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINAIPFCYLDGTSKDRFDQVDRFNNTPEI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI +NT++E +L+    K  + + ++
Sbjct: 1024 LICENTVEEKILKLQDMKRGVAEAII 1049


>gi|227015822|gb|ACP17919.1| putative non-specific serine/threonine protein kinase [Pseudomonas
            nitroreducens]
          Length = 1093

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 20/188 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ- 85
             +K  Q+         +      H  K+ AL  ++++  A    +++   F S LA +Q 
Sbjct: 900  LLKLRQVCCDPRLLQPD--LPATHSGKLSALLEMLDELLAEGRRVLLFSQFTSMLALIQA 957

Query: 86   --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     A   G T D+    + ++ +G++PL      + G GLNL    + ++ +  
Sbjct: 958  QLQARNIPYALLTGETRDRR-QPVDDFQQGRVPLFLISLKAGGTGLNLTT-ADTVIHYDP 1015

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+    QQ  +R       + G  + VFVY LIA+ T++E + Q    K+ +   +L  
Sbjct: 1016 WWNPAVEQQATDR-----AYRIGQDKPVFVYKLIARGTLEEKIQQLQARKAALAAGVLED 1070

Query: 198  LKKETIHV 205
             K   + +
Sbjct: 1071 GKNTGLQL 1078


>gi|139438973|ref|ZP_01772433.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
 gi|133775684|gb|EBA39504.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
          Length = 1173

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 78/196 (39%), Gaps = 21/196 (10%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
            ++     +     ++  K  Q+      + E+    +    K+ A   ++  A      I
Sbjct: 965  EVSEFKKDKLKVLAELTKLRQICCDPHLHYED---YKAGSAKLDACMELVHGALDGGHHI 1021

Query: 72   IVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            ++   F   L  + K   +            + +     + ++  G++P+      + G 
Sbjct: 1022 LLFSQFTGMLDIIGKRLAKEDIGFLKLTGASSKESRAKMVAQFQAGEVPVFLISLKAGGV 1081

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    ++++ +  WW++    Q  +R       + G +  V VY LIA++TI+E ++
Sbjct: 1082 GLNLT-AADVVIHYDPWWNVAAQDQATDR-----AHRIGQQHTVTVYKLIAKDTIEERIM 1135

Query: 182  QRLRTKSTIQDLLLNA 197
            +   +K  + + +L  
Sbjct: 1136 RMQESKRDLVNSVLGG 1151


>gi|258405011|ref|YP_003197753.1| SNF2-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257797238|gb|ACV68175.1| SNF2-related protein [Desulfohalobium retbaense DSM 5692]
          Length = 1068

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 1    MKQY----HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVH 52
            M+ Y     K + ++  D+  + I     +     +K  Q+      +  D       + 
Sbjct: 841  MELYASLAKKLKEQVLRDVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLP 900

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTI 101
              K +  + ++     +   ++V   F   L  ++          A+  G + D+     
Sbjct: 901  SGKFETFKDLVTGIIDDGHKVLVFSQFVQMLHIIRSWLSMNKVPFAYLDGTSKDRFEQVE 960

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               N   IP+      + G GLNL    + ++ +  WW+     Q  +R       + G 
Sbjct: 961  NFNNNPDIPIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVEDQATDR-----THRIGQ 1014

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + VF Y LI +NT++E +L+    K  + + ++
Sbjct: 1015 TKKVFSYKLICENTVEEKILKLQEQKKGVAEAII 1048


>gi|220904807|ref|YP_002480119.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869106|gb|ACL49441.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1091

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 872  RKLRAQVLADVDQKGLAKSQMSILDALLKLRQICCHPRLLKIDIPGFTTNLPSGKFDAFK 931

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 932  DMIMEIVEGGHKVLVFSQFVQMLQIIKQWLEFSQVPFCYLDGASKDRFDQVDRFNNSPDI 991

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 992  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1045

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI QNT++E +L+    K  + + ++
Sbjct: 1046 LICQNTVEEKILKLQEAKRGVAEAII 1071


>gi|88857230|ref|ZP_01131873.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
 gi|88820427|gb|EAR30239.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
          Length = 1060

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 25/218 (11%)

Query: 2    KQYHKFQRELYCDLQG----ENIEAFNSASK--TVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y + ++++   L+       I+    A     +K  Q+     +  DE   +      
Sbjct: 836  KCYGEIRQKMEFKLKDLFAEIGIDKSRLAFLEALLKLRQICCSPQLLSDEGLQFSFADST 895

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQE 103
            K+  L   +         +I+   F S L+ +++         A   G+T D+    +  
Sbjct: 896  KLDWLAKHLPAMLQQGRKVIIFSQFTSMLSLIEQQLQALNLGYAILTGQTRDRQSA-VDS 954

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + +G   +      + G GLNL    + ++ F  WW+    QQ  +R       + G K+
Sbjct: 955  FQQGDKSIFLISLKAGGTGLNLT-AADTVIHFDPWWNPAVEQQATDR-----AYRIGQKK 1008

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             VFVY LI Q+TI+E V +  + K+ + +   +A  K+
Sbjct: 1009 PVFVYKLICQDTIEERVYEMQQNKAALAESFFDAASKQ 1046


>gi|198283188|ref|YP_002219509.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218667367|ref|YP_002425417.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|198247709|gb|ACH83302.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218519580|gb|ACK80166.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
          Length = 1113

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +K  Q+         EK  K     K+  L  +I +  A    I++   F   LA +  
Sbjct: 916  MLKLRQVCCDPRLLKSEKARKVQDSAKLALLMEMIPELLAEGRQILLFSQFTEMLALISA 975

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +         G T D+    I  +  G++PL      + G GLNL    + ++ +  
Sbjct: 976  RLDKMHIPYVLLTGSTQDR-KTPIDRFQRGEVPLFLISLKAGGVGLNLT-AADTVIHYDP 1033

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G KR VFVY LI   +I+E +L     K+ +   +L  
Sbjct: 1034 WWNPAAENQATDR-----AHRIGQKRQVFVYKLIVAGSIEEKILALQEKKAILAAGVLEK 1088

Query: 198  LKKETI 203
             +KE +
Sbjct: 1089 TQKEKL 1094


>gi|313902711|ref|ZP_07836109.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467008|gb|EFR62524.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
          Length = 1191

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 2    KQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +     +  +  ++    I           ++  Q        D    ++     K
Sbjct: 967  KLYRELLAAYRARVLAEVDRAGIARSRMTILEALLRLRQACCHPALLDLPG-YRNAGSAK 1025

Query: 56   IKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN 105
            ++A   ++         ++V   F S L  LQ+   +           +      ++ + 
Sbjct: 1026 LEAFRDLVHHVAGGGGKVLVFSQFTSMLDILQRELDRLGLGWERLDGRVRNREERVRRFQ 1085

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG +P+      + G GLNL    + ++ +  WW+    +Q   R       + G  R V
Sbjct: 1086 EGDVPVFLISLKAGGTGLNLT-AASYVIHYDPWWNPAAEEQATGR-----AHRIGQDRPV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F Y LI + T++E +LQ    K  +   LL  
Sbjct: 1140 FSYKLITRGTVEEKILQLQEQKRALAGALLAG 1171


>gi|313112827|ref|ZP_07798474.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624897|gb|EFQ08205.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1100

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 21/186 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +         ++K   C++L   AV   E  H   +  +    LE++ ++ + 
Sbjct: 913  REICCDPRLVADNWDGGSAKLDACMELVTAAV---EGGHRILLFSQFTSMLELLAKRLDE 969

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A +    HF      LQ + P+          ++ +N G+  +      + G GLNL   
Sbjct: 970  AGV---SHFT-----LQGSTPKPV----RAELVRRFNSGEADVFLISLRAGGTGLNLT-A 1016

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW++    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1017 ADIVIHYDPWWNVAAQNQATDR-----AYRIGQRNPVQVYKLIAQDTIEEKIVELQQAKQ 1071

Query: 189  TIQDLL 194
             + + +
Sbjct: 1072 DLAETV 1077


>gi|146292471|ref|YP_001182895.1| SNF2-like protein [Shewanella putrefaciens CN-32]
 gi|145564161|gb|ABP75096.1| SNF2-related protein [Shewanella putrefaciens CN-32]
          Length = 1073

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+ + QG N          +K  Q          E+  K  ++ K+  L+  + 
Sbjct: 860  EKKLRDLFAN-QGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLF 113
            +       +++   F S L  ++              G+T  +    I  + +G  P+  
Sbjct: 919  EMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQ-IDRFQDGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             T++E + +  + K  + D +L  
Sbjct: 1032 GTVEEKIQEMQQHKQNLADSILEG 1055


>gi|291520743|emb|CBK79036.1| Superfamily II DNA/RNA helicases, SNF2 family [Coprococcus catus
            GD/7]
          Length = 1096

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 26/206 (12%)

Query: 6    KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVI 62
            + Q+EL                ++  K  QL      +Y +           K+     +
Sbjct: 883  QLQKELESQNDSMFKASKIQILAELTKLRQLCCDPALIYKN-----YHGGSAKLDTCIQL 937

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGKIP 110
            I+  +A    I++   F S L  ++              G T  +     +  +NE  IP
Sbjct: 938  IQNARAGGHKILLFSQFTSMLDIIEHRLKLEHILYYRLDGSTKSEQRTRLVNAFNENAIP 997

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G +I++ +  WW+     Q  +R       + G    V VY L
Sbjct: 998  VFLISLKAGGTGLNLT-GADIVIHYDPWWNAAAQNQATDR-----AHRIGQTHTVTVYKL 1051

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            IA++TI+E +L+    K  + D +L+
Sbjct: 1052 IARHTIEEKILELQENKKALSDQILS 1077


>gi|240145145|ref|ZP_04743746.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|257202823|gb|EEV01108.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|291537657|emb|CBL10769.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            M50/1]
 gi|291537792|emb|CBL10903.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            XB6B4]
          Length = 1099

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 1    MKQYHKFQ---RELYCDLQGENIEA--FNSASKTVKCLQLAN--GAVYYDEEKHWKEVHD 53
            M+ Y  +    +E+      +          S+  K  QL    G +  D          
Sbjct: 877  MQLYDAYATRMKEMLSQQNEKEFHKGRMQILSELTKLRQLCCDPGLLLEDYHGE-----S 931

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
             K      +I  A      I++   F S L RL +   +              +K    +
Sbjct: 932  AKTDMCMELIVNAVGAGHKILLFSQFTSMLDRLTERLKKEGIDYYLLTGSVNKEKRMQMV 991

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +N   +P+      + G GLNL    +I++ +  WW++    Q  +R       + G 
Sbjct: 992  ESFNNDDVPVFCISLKAGGTGLNLT-SADIVIHYDPWWNVAVQNQATDR-----AHRIGQ 1045

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K  V VY L+A+ TI+E ++     K  + + +L  
Sbjct: 1046 KHVVTVYKLVAEGTIEEKIIDIQERKKKLAEQVLEG 1081


>gi|319425773|gb|ADV53847.1| SNF2-related protein [Shewanella putrefaciens 200]
          Length = 1073

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+ + QG N          +K  Q          E+  K  ++ K+  L+  + 
Sbjct: 860  EKKLRDLFAN-QGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLF 113
            +       +++   F S L  ++              G+T  +    I  + +G  P+  
Sbjct: 919  EMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQ-IDRFQDGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             T++E + +  + K  + D +L  
Sbjct: 1032 GTVEEKIQEMQQHKQNLADSILEG 1055


>gi|120599532|ref|YP_964106.1| SNF2-like protein [Shewanella sp. W3-18-1]
 gi|120559625|gb|ABM25552.1| SNF2-related protein [Shewanella sp. W3-18-1]
          Length = 1073

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+ + QG N          +K  Q          E+  K  ++ K+  L+  + 
Sbjct: 860  EKKLRDLFAN-QGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLF 113
            +       +++   F S L  ++              G+T  +    I  + +G  P+  
Sbjct: 919  EMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQ-IDRFQDGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             T++E + +  + K  + D +L  
Sbjct: 1032 GTVEEKIQEMQQHKQNLADSILEG 1055


>gi|303327511|ref|ZP_07357952.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862451|gb|EFL85384.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 1085

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 866  RKLRAQVLADVDQKGLAKSQMSILDALLKLRQICCHPRLLKMDLPGFSNNLPSGKFDAFK 925

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             ++ +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 926  DMVLEIVEGGHKVLVFSQFVQMLQIIKQWLEFSQVPFCYLDGASKDRFDQVDRFNNSPDI 985

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 986  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSYK 1039

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI QNT++E +L+    K  + + ++
Sbjct: 1040 LICQNTVEEKILKLQEAKRGVAEAII 1065


>gi|295102130|emb|CBK99675.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii L2-6]
          Length = 1109

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +         ++K   C +L + AV   E  H   +  +    LE++ ++ +A
Sbjct: 920  REICCDPRLIADNWEGGSAKLDACAELVSSAV---EGGHRILLFSQFTSMLELLAKRLDA 976

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
              I    HF      LQ + P+          ++ +N G++ +      + G GLNL   
Sbjct: 977  EGI---SHFT-----LQGSTPKPV----RAELVRRFNGGEVSVFLISLRAGGTGLNLT-A 1023

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW++    Q  +R       + G +  V VY LIAQ+TI+E +++  + K 
Sbjct: 1024 ADIVIHYDPWWNVAAQNQATDR-----AYRIGQQNPVQVYKLIAQDTIEEKIVELQQAKQ 1078

Query: 189  TIQDLL 194
            ++ D +
Sbjct: 1079 SLADTV 1084


>gi|257064183|ref|YP_003143855.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
            heliotrinireducens DSM 20476]
 gi|256791836|gb|ACV22506.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
            heliotrinireducens DSM 20476]
          Length = 1082

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 25/220 (11%)

Query: 2    KQYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + + +  R+       E+++         ++ +   Q+           +       K+ 
Sbjct: 861  RAHEQMLRQKIASQTDEDMKDGTQKIEVLAELMHLRQICCDPHLMTSRYN---GPAAKLD 917

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN 105
            AL  +I         ++V   F S L  +     + R             K    ++ +N
Sbjct: 918  ALSDLIGSCMDAGQKMLVFSQFKSFLDIIADRLDEQRIAHFAITGDTPSAKRLELVERFN 977

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                P+      + G GLNL  G ++++    WW+     Q  +R       + G    V
Sbjct: 978  ADDTPVFLISLKAGGTGLNLT-GASVVIHADPWWNAAAQNQATDR-----AHRIGQTHVV 1031

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +IA++TI+E ++     K  + + ++ A +  ++  
Sbjct: 1032 SVHKIIAKDTIEERIMALQDAKRDLAEQIIGATEGSSLAT 1071


>gi|152999998|ref|YP_001365679.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
 gi|151364616|gb|ABS07616.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
          Length = 1073

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 19/209 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+   QG            +K  Q          E+  K   + K+  L+  + 
Sbjct: 860  EKKLRDLFAT-QGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +       I++   F S L+ ++              G+T  +    I ++ EG  P+  
Sbjct: 919  EMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQ-IDKFQEGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             T++E + +  + K ++ D +L    K T
Sbjct: 1032 GTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|256828244|ref|YP_003156972.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
 gi|256577420|gb|ACU88556.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
          Length = 1068

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+      +  D       +   K +A +
Sbjct: 849  KKLKEQVLQDVDEKGIGQSQISILDALLKLRQICCHPRLLKLDMPGFNANLSSGKFEAFK 908

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             ++     +   ++V   F   L  ++           +  G + D+     +  N  +I
Sbjct: 909  DLVTTIIDDGHKVLVFSQFVQMLHIIRNWLHMVEIPFCYLDGTSKDRFEQVDKFNNTPEI 968

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 969  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVEDQATDR-----THRIGQTRQVFAYK 1022

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I +NT++E +L+   +K  I D ++
Sbjct: 1023 MICENTVEEKILKLQESKKGIADSII 1048


>gi|146282998|ref|YP_001173151.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145571203|gb|ABP80309.1| helicase/SNF2 family domain protein [Pseudomonas stutzeri A1501]
          Length = 773

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 18/181 (9%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      +  D     +     K+ +L  ++++  +    +++   F S LA +
Sbjct: 578 LLKLRQVCCDLRLLKGDAVATSRGSSSGKLDSLLDMLDELMSEGRRVLLFSQFTSMLALI 637

Query: 85  QKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           ++A  +            D     ++ +  G++PL      + G GLNL    + ++ + 
Sbjct: 638 EQALLKRGITYVKLTGETDDRRTPVERFQAGEVPLFLISLKAGGTGLNLT-AADTVIHYD 696

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFVY LI + T++E + +    K+ +   +L 
Sbjct: 697 PWWNPAAENQATDR-----AYRIGQDKPVFVYRLITRGTVEERIRELQARKAELAAGVLE 751

Query: 197 A 197
            
Sbjct: 752 G 752


>gi|327481349|gb|AEA84659.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri DSM
           4166]
          Length = 773

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 18/181 (9%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      +  D     +     K+ +L  ++++  +    +++   F S LA +
Sbjct: 578 LLKLRQVCCDLRLLKGDAVATSRGSSSGKLDSLLDMLDELMSEGRRVLLFSQFTSMLALI 637

Query: 85  QKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           ++A  +            D     ++ +  G++PL      + G GLNL    + ++ + 
Sbjct: 638 EQALLKRGITYVKLTGETDDRRTPVERFQAGEVPLFLISLKAGGTGLNLT-AADTVIHYD 696

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFVY LI + T++E + +    K+ +   +L 
Sbjct: 697 PWWNPAAENQATDR-----AYRIGQDKPVFVYRLITRGTVEERIRELQARKAELAAGVLE 751

Query: 197 A 197
            
Sbjct: 752 G 752


>gi|317122409|ref|YP_004102412.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
 gi|315592389|gb|ADU51685.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
          Length = 1191

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 2    KQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +     +  +  ++    I           ++  Q        D    ++     K
Sbjct: 967  KLYRELLAAYRARVLAEVDRAGIARSRMTILEALLRLRQACCHPALLDLPG-YRNAGSAK 1025

Query: 56   IKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN 105
            ++A   ++         ++V   F S L  LQ+   +           +      ++ + 
Sbjct: 1026 LEAFRELVHHVAGGGGKVLVFSQFTSMLDILQRELDRLGLGWERLDGRVRNREERVRRFQ 1085

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG +P+      + G GLNL    + ++ +  WW+    +Q   R       + G  R V
Sbjct: 1086 EGDVPVFLISLKAGGTGLNLT-AASYVIHYDPWWNPAVEEQATGR-----AHRIGQDRPV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F Y LI + T++E +LQ    K  +   LL  
Sbjct: 1140 FSYKLITRGTVEEKILQLQEQKRALAGALLAG 1171


>gi|253580974|ref|ZP_04858236.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847816|gb|EES75784.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1114

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  ++ E          ++  K  Q+         +    +    K+
Sbjct: 891  KLYDAHVKRMMLMLDKQSEEEFKTSKITILAELTKLRQICCDPSLIFAD---YKADSAKV 947

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW 104
                 +I  A  +   I++   F + L  L K   + +            +K    ++ +
Sbjct: 948  DMCLNMISNAVESGHKILLFSQFTTMLDHLAKRLEEEKISYYMLTGSTSKEKRAQMVENF 1007

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N     +      + G GLNL    +I++ F  WW+L    Q  +R       + G K  
Sbjct: 1008 NTDDTQVFCISLKAGGTGLNLT-AADIVIHFDPWWNLAVQNQATDR-----AHRIGQKNV 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI ++TI+E +L+    K  + D +L  
Sbjct: 1062 VNVYKLIVKDTIEENILKLQEKKRELADQILEG 1094


>gi|217974039|ref|YP_002358790.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
 gi|217499174|gb|ACK47367.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
          Length = 1073

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 19/209 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+   QG            +K  Q          E+  K   + K+  L+  + 
Sbjct: 860  EKKLRDLFAT-QGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +       I++   F S L+ ++              G+T  +    I ++ EG  P+  
Sbjct: 919  EMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQ-IDKFQEGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             T++E + +  + K ++ D +L    K T
Sbjct: 1032 GTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|126173709|ref|YP_001049858.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS155]
 gi|125996914|gb|ABN60989.1| SNF2-related protein [Shewanella baltica OS155]
          Length = 1073

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 19/209 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+   QG            +K  Q          E+  K   + K+  L+  + 
Sbjct: 860  EKKLRDLFAT-QGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +       I++   F S L+ ++              G+T  +    I ++ EG  P+  
Sbjct: 919  EMVQEGRKILIFSQFTSMLSLIEAELVDLGLEYSKLTGQTRLRQAQ-IDKFQEGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             T++E + +  + K ++ D +L    K T
Sbjct: 1032 GTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|257438160|ref|ZP_05613915.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199491|gb|EEU97775.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 1119

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 21/186 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            RE+ CD +         ++K   C++L   AV   E  H   +  +    LE++ ++ +A
Sbjct: 931  REICCDPRLIADNWTGGSAKLDACIELVTSAV---ESGHRILLFSQFTSMLELLAKRLDA 987

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
              +    HF      LQ + P+          ++ +N G+  +      + G GLNL   
Sbjct: 988  EGV---SHFT-----LQGSTPKPV----RAELVRRFNGGEASVFLISLRAGGTGLNLT-A 1034

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ +  WW++    Q  +R       + G +  V VY LI Q+TI+E +++  + K 
Sbjct: 1035 ADIVIHYDPWWNVAAQNQATDR-----AYRIGQQNPVQVYKLITQDTIEEKIVELQQAKQ 1089

Query: 189  TIQDLL 194
             + + +
Sbjct: 1090 DLAETV 1095


>gi|190572706|ref|YP_001970551.1| putative helicase [Stenotrophomonas maltophilia K279a]
 gi|190010628|emb|CAQ44237.1| putative helicase [Stenotrophomonas maltophilia K279a]
          Length = 1105

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 18/203 (8%)

Query: 7    FQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             ++++   + G  +   +       +K  Q+             +     K+  L  ++ 
Sbjct: 871  MEKQVREAISGSGLARSHIVVLDALLKLRQVCCDPRLLPGNAPARAAGSAKLDLLREMLP 930

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCT----IQEWNEGKIPLLFA 114
                    I+V   F   L+ + +A         TL  D       +Q + +G+IP+   
Sbjct: 931  PMVEEGRRILVFSQFTGMLSLIAQALDDLGLAYVTLTGDTQDRATPVQRFMQGEIPVFLI 990

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ F  WW+     Q  +R       + G ++ VFVY LI   
Sbjct: 991  SLKAGGVGLNLT-AADTVIHFDPWWNPAAENQASDR-----AHRIGQQQPVFVYRLITAG 1044

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +I+E + +    K+ + + +L  
Sbjct: 1045 SIEERIAELQERKALLAESILEG 1067


>gi|160874619|ref|YP_001553935.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|160860141|gb|ABX48675.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|315266860|gb|ADT93713.1| SNF2-related protein [Shewanella baltica OS678]
          Length = 1073

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 19/209 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+   QG            +K  Q          E+  K   + K+  L+  + 
Sbjct: 860  EKKLRDLFAT-QGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +       I++   F S L+ ++              G+T  +    I ++ EG  P+  
Sbjct: 919  EMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQ-IDKFQEGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             T++E + +  + K ++ D +L    K T
Sbjct: 1032 GTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|304409583|ref|ZP_07391203.1| SNF2-related protein [Shewanella baltica OS183]
 gi|307303941|ref|ZP_07583694.1| SNF2-related protein [Shewanella baltica BA175]
 gi|304352101|gb|EFM16499.1| SNF2-related protein [Shewanella baltica OS183]
 gi|306912839|gb|EFN43262.1| SNF2-related protein [Shewanella baltica BA175]
          Length = 1073

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 19/209 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+L+   QG            +K  Q          E+  K   + K+  L+  + 
Sbjct: 860  EKKLRDLFAT-QGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKLDWLKQNLP 918

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +       I++   F S L+ ++              G+T  +    I ++ EG  P+  
Sbjct: 919  EMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQ-IDKFQEGDTPVFL 977

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+    +Q  +R       + G  + VFVY LIA+
Sbjct: 978  ISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQDKPVFVYKLIAE 1031

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             T++E + +  + K ++ D +L    K T
Sbjct: 1032 GTVEEKIQEMQQHKQSLADSILEGKGKGT 1060


>gi|83649604|ref|YP_438039.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83637647|gb|ABC33614.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis KCTC
            2396]
          Length = 1106

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 18/178 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
             +K  Q+         +   K     K+  L  ++         I++   F S L  ++ 
Sbjct: 914  LLKLRQVCCDPSLLKLDSARKVKSSAKLDTLMSMLPSLLEEGRKILLFSQFTSMLGLIEA 973

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +         G T D+D   +  +  G++ L      + G GLNL    + ++ +  
Sbjct: 974  QLDKAGIEYVKLTGATKDRD-TPVNRFQNGEVSLFLISLKAGGVGLNLT-AADTVIHYDP 1031

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            WW+     Q  +R       + G  + VFVY LI + T++E +++  + K  + D LL
Sbjct: 1032 WWNPAVENQATDR-----AYRIGQDKPVFVYKLITEGTVEEKIVELQKQKQALADNLL 1084


>gi|317153779|ref|YP_004121827.1| SNF2-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944030|gb|ADU63081.1| SNF2-related protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1069

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 24/217 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D++ + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 850  KKLKDQVLRDVEEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             ++         ++V   F   L  ++          A+  G + D+     +  +   I
Sbjct: 910  DLVIDIIEGGHKVLVFSQFVRMLHVIRSWLQIREIPFAYLDGSSKDRFEQVDRFNDNPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
            +I QNT++E +L+    K  + + ++   +ALK  T 
Sbjct: 1024 MICQNTVEERILKLQEQKKDVAESIIPGQSALKGLTR 1060


>gi|32475836|ref|NP_868830.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
 gi|32446379|emb|CAD76207.1| probable swi/snf family helicase 2 [Rhodopirellula baltica SH 1]
          Length = 1386

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 22/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIK 57
              Y   +R+   +L+  + +        ++ ++  +        D +   K    +    
Sbjct: 1168 AMYEAMRRKALQNLEDSDDDRPVHIKILAELMRLRRFCCHPDLVDPDAGLKAAKLERFTD 1227

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
             +  +IE      ++V   F   L  L+    + +             K   ++  + +G
Sbjct: 1228 TVTDLIE--GGHKVLVFSQFVGHLHLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQDG 1285

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+     Q  +R       + G +R V V
Sbjct: 1286 EGDVFLISLKAGGVGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRMGQQRPVTV 1339

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            Y  I   TI+E +LQ   +K  + D LL   + 
Sbjct: 1340 YRFITTGTIEERILQLHESKRDLADSLLEGTES 1372


>gi|283851358|ref|ZP_06368640.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
 gi|283573308|gb|EFC21286.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
          Length = 1072

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 26/218 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++   +  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 853  KKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLPSGKFDAFK 912

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGK- 108
             +I         ++V   F   L  ++          A+  G + D+    +  +NE + 
Sbjct: 913  DLITDCIEEGHKVLVFSQFVQMLHIIRSWMTISQMSFAYLDGSSKDRFDQ-VDRFNEDES 971

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +      + G GLNL    + ++ +  WW+     Q  +R       + G KR VF Y
Sbjct: 972  IKVFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQKRQVFSY 1025

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
             +I QNT++E +L+    K  + + ++   +A K  T 
Sbjct: 1026 KMICQNTVEEKILKLQEQKKDVAEAIIPGQDAFKSLTR 1063


>gi|254452793|ref|ZP_05066230.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
 gi|198267199|gb|EDY91469.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
          Length = 970

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 5   HKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
               RE      L G  I   ++    +K  Q+         +   K     K   L  I
Sbjct: 754 DARVREALAKKGLAGSRITVLDA---LLKLRQVCCDPRLVKLDAAAKVKESAKFSRLMEI 810

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
           +E+  +    +++   F   L  ++          A   G+T D+    I ++  G   +
Sbjct: 811 MEELMSEGRKVLIFSQFVEMLRLIESEVQSRGWSYAMLHGQTRDRSSE-IDKFQSGDAQV 869

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+       +ER  + R  + G  + VFVY L 
Sbjct: 870 FLISLKAGGTGLNLT-AADTVILYDPWWN-----PAVERQAMDRAHRIGQDKPVFVYRLY 923

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + T++  +      K  + D L        + +
Sbjct: 924 TEGTVESAIQNMQARKQALADALFEGTSGGPMGL 957


>gi|126659998|ref|ZP_01731121.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618763|gb|EAZ89509.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 854

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           M  Y   +R+    L   +           +  +K  +         ++   K     K+
Sbjct: 634 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLVLDDASLKG---SKL 690

Query: 57  KALEVIIEKA--NAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCT-IQEW 104
           +  + I+E+   N    +V   F         + D  ++   +  G T  K+    ++ +
Sbjct: 691 QLFQEILEELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRVKAF 750

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 751 QSGEGDVFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQATDR-----AYRIGQQRP 804

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 805 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 837


>gi|325110937|ref|YP_004272005.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
 gi|324971205|gb|ADY61983.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
          Length = 1120

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQ---RELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +   R     L  E        +     ++  Q A      D  K  +     K
Sbjct: 898  KLYDELKEYYRNSIFTLMDEQGLGKTKMHVLEALLRLRQAACHPGLLDSAKTGE--SSTK 955

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            +  L   +E+  A     +V   F S LA ++    +         G T D+D       
Sbjct: 956  LDVLTEHLEELIAENHKTLVFSQFTSLLAIVKNHLDKANIPYVYLDGSTKDRDAVVQTFQ 1015

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  IP+      + G GLNL    + +     WW+     Q I+R       + G  R 
Sbjct: 1016 NDKDIPVFLISLKAGGLGLNLT-AADYVFLLDPWWNPAVEAQAIDR-----AHRVGQTRN 1069

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y LIA+ TI+E + +  + K  + D +L+
Sbjct: 1070 VIAYRLIARGTIEEKIAELQQNKRKLADAILS 1101


>gi|303257421|ref|ZP_07343434.1| SNF2/helicase domain protein [Burkholderiales bacterium 1_1_47]
 gi|302859778|gb|EFL82856.1| SNF2/helicase domain protein [Burkholderiales bacterium 1_1_47]
          Length = 1361

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +  Y   +      LQ E I    +     K  Q A      D+      +   KI+   
Sbjct: 1143 LAIYENIRTRTLSGLQSEKINPIEALMALTKLRQAACSPELVDKH---LTIPSSKIRVFL 1199

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK 108
             ++ +   N    +V   F S LA +++A  +               +    ++ +  G 
Sbjct: 1200 ELVRELKENKHRALVFSQFTSFLALVRQALDKAGIEYLYLDGSVPAAQRKKLVETFQNGD 1259

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+     Q  +R       + G KR V +Y
Sbjct: 1260 MPLFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AYRIGQKRPVTIY 1313

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI++ T+++ +L+  +TK  + D LL  
Sbjct: 1314 KLISEKTVEQKILELHKTKKNLADALLEG 1342


>gi|312959636|ref|ZP_07774153.1| SNF2-like protein [Pseudomonas fluorescens WH6]
 gi|311286353|gb|EFQ64917.1| SNF2-like protein [Pseudomonas fluorescens WH6]
          Length = 896

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 78/181 (43%), Gaps = 19/181 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDE-KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
            +K  Q+       ++           K+ +L  ++++  A    I++   F S L+ ++
Sbjct: 696 LLKLRQVCCDLRLVNDATPPARGSSSGKLDSLLEMLDELFAEGRRILLFSQFTSMLSLIE 755

Query: 86  KAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               +         G+T D+    ++++  GK+ +      + G GLNL    + ++ + 
Sbjct: 756 AELKKRGIAYALLTGQTRDRR-TPVKDFQSGKLQIFLISLKAGGVGLNLTE-ADTVIHYD 813

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G ++ VFVY +IA+ T++E +    + KS +   +L+
Sbjct: 814 PWWNPATENQATDR-----AYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLD 868

Query: 197 A 197
            
Sbjct: 869 G 869


>gi|331003253|ref|ZP_08326760.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330412906|gb|EGG92286.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1137

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 25/185 (13%)

Query: 26   ASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
             S+  K  Q+    G ++ +           K++    +++        I++   F S L
Sbjct: 944  LSEITKLRQICCDPGLIFENYSGGA-----AKLETCVDLVKSGIEAGHKILLFSQFTSML 998

Query: 82   ARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              ++K F +            + +K    + ++N     +      + G GLNL  G +I
Sbjct: 999  DIIEKRFKEENISSYMITGSTSKEKRIQLVNDFNNDDTNVFLISLKAGGTGLNL-VGADI 1057

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ +  WW+     Q  +R       + G K  V VY LI + TI+E +++   +K  + 
Sbjct: 1058 VIHYDPWWNFAAQNQATDR-----AHRIGQKNNVTVYRLITKGTIEERIVKLQESKKDLA 1112

Query: 192  DLLLN 196
            D +LN
Sbjct: 1113 DRVLN 1117


>gi|162451262|ref|YP_001613629.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
 gi|161161844|emb|CAN93149.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
          Length = 1141

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
              Y +  RE+   + GE              +   +  Q A         + + +    K
Sbjct: 915  ALYLQVAREVRAQVLGEVERVGLAKSQLQILAGLTRLRQAACDPRLLGLPREFGDDDSGK 974

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            + A+  +I  A      ++V   F   L  ++KA  +         G T D+     +  
Sbjct: 975  LVAVRELIANAVEGGHKVLVFSQFVMMLRLIEKAMKEDGVAYEYLDGSTKDRAERVERFQ 1034

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  +P+      + G GLNL    + ++ F  WW+    QQ  +R       + G  + 
Sbjct: 1035 NDPSVPVFLISLKAGGTGLNLT-AADTVIHFDPWWNPAVEQQATDR-----AHRIGQTKV 1088

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y LIA+ TI+E +L     K  +   +L+
Sbjct: 1089 VTAYRLIAEGTIEEKILLLKDKKRQLVASVLS 1120


>gi|71279360|ref|YP_270079.1| Snf2 family protein [Colwellia psychrerythraea 34H]
 gi|71145100|gb|AAZ25573.1| Snf2 family protein [Colwellia psychrerythraea 34H]
          Length = 1134

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 21/200 (10%)

Query: 9    RELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            +++  D  L+   IE  ++    +K  Q+ N       E   K     K+  L   + + 
Sbjct: 921  KDIIADKGLKRSQIEVLDA---LLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQ 977

Query: 66   -ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHP 116
                  I++   F S L+ ++                  K    + ++  G++P+     
Sbjct: 978  IDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKRQEVVDKFQRGEVPVFLISL 1037

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL    + ++ F  WW+     Q  +R       + G  + VFVY LI +N+I
Sbjct: 1038 RAGGVGLNLT-AADTVIHFDPWWNPAVENQATDR-----AYRIGQNKPVFVYKLIIENSI 1091

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E + +  + K+ +   LL+
Sbjct: 1092 EEKIQKIQQNKAELAKALLS 1111


>gi|126660775|ref|ZP_01731871.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126617919|gb|EAZ88692.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   +           +  +K  +         ++   K     K+
Sbjct: 1180 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLVLDDASLKG---SKL 1236

Query: 57   KALEVIIEKA--NAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCT-IQEW 104
            +  + I+E+   N    +V   F         + D  ++   +  G T  K+    ++ +
Sbjct: 1237 QLFQEILEELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRVKAF 1296

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1297 QSGEGDVFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQATDR-----AYRIGQQRP 1350

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 1351 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 1383


>gi|242280237|ref|YP_002992366.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
 gi|242123131|gb|ACS80827.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
          Length = 1069

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 24/217 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             + + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 850  KRLKDQVLRDVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGLSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++          A+  G + D+     +  +   I
Sbjct: 910  DLIFDIVEGGHKVLVFSQFVQMLHVIRSWLTIKDIPFAYLDGSSKDRFEQVDRFNDSPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
            +I QNT++E +L     K ++ D ++   +ALK  T 
Sbjct: 1024 MICQNTVEEKILGLQEMKKSVADAIIPGQSALKSLTR 1060


>gi|85860994|ref|YP_463196.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
 gi|85724085|gb|ABC79028.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
          Length = 1407

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
              Y   +R+    L+  +     +     ++ ++  Q          +    E+   K+ 
Sbjct: 1186 ALYEAMRRQAVETLEQNDSPVGQKHLKILAEIMRLRQACCHPRLVVPD---SELTSSKLA 1242

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
                ++E+   N+   +V   F S LA +Q    Q          G    +    ++ + 
Sbjct: 1243 LFGEVVEEMLENSHKALVFSQFVSHLALIQDYLKQKGIEYRYLDGGTPPKERRREVEAFQ 1302

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             GK  L      + G GLNL    + ++    WW+     Q  +R       + G KR V
Sbjct: 1303 AGKGSLFLISLRAGGVGLNLT-AADFVIHMDPWWNPAVEDQASDR-----AHRIGQKRPV 1356

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+ +NTI+E +L+   +K  + D LL+ 
Sbjct: 1357 TVYRLVTKNTIEEKILKLHASKRDLADSLLDG 1388


>gi|83591548|ref|YP_425300.1| SNF2 helicase-like protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574462|gb|ABC21013.1| SNF2 helicase-related protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1209

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 19/183 (10%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+        +    K     K+  LE ++          +V   F S LA 
Sbjct: 1014 LAALTRLRQVCCDPRLV-KGGPRKPPPSAKLDRLEEMLRDLVDEGRRTLVFSAFPSMLAL 1072

Query: 84   LQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +++             G T D+D   +  +  G +P+      + G GL L    + ++ 
Sbjct: 1073 VEERLAAASIPWVSLTGETRDRD-TPVTRFQSGAVPVFLISLKAGGTGLTLT-AADTVIH 1130

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +  WW+     Q  +R       + G  + VFV+ L+A  T++E +L     K  + D L
Sbjct: 1131 YDPWWNPAVEAQATDR-----AHRIGQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGL 1185

Query: 195  LNA 197
             + 
Sbjct: 1186 FDG 1188


>gi|171915800|ref|ZP_02931270.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 22/206 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-----AL 59
            K  RE   D QG            +K  Q+         E   K     K +      L
Sbjct: 681 DKRVREAIAD-QGIEKSQLIVLDALLKLRQVCCHPSLLKTESAKKVETSAKTEYLMDEML 739

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPL 111
             +IE+     I++   F S L  L++   +            +     ++++  G +P+
Sbjct: 740 PELIEE--GRRILIFSQFTSMLDILERMLKERGIRYVKLTGSTEDRMKPVEQFQNGDMPV 797

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+ L    + ++ +  WW+     Q  +R       + G K+ VFV+ LI
Sbjct: 798 FLISLKAGGVGITLT-AADTVIHYDPWWNPAIEAQATDR-----AYRIGQKKPVFVHKLI 851

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q TI+E +++  R KS + + LL  
Sbjct: 852 CQGTIEERIVEMQRRKSALINGLLTG 877


>gi|237654129|ref|YP_002890443.1| SNF2-related protein [Thauera sp. MZ1T]
 gi|237625376|gb|ACR02066.1| SNF2-related protein [Thauera sp. MZ1T]
          Length = 1100

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 18/179 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
             +K  Q+             +     K+  L  ++ +       I+V   F + L  +  
Sbjct: 903  LLKLRQVCCDPRLLKSPAALRVKERAKLDLLMDMLPELIDEGRRILVFSQFTTMLGLIAA 962

Query: 87   AFPQGR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               + +         T D+    ++++ +G++P+      + G GLNL    + ++ +  
Sbjct: 963  ELDKAKIGWVALTGDTRDRR-VPVEDFQKGRVPVFLISLKAGGVGLNLT-AADTVIHYDP 1020

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFV+ L+   +I+E +L     K+ + + +L+
Sbjct: 1021 WWNPAAENQATDR-----AHRIGQDKPVFVFKLVCAGSIEEKILALQERKAALAESVLS 1074


>gi|323697573|ref|ZP_08109485.1| SNF2-related protein [Desulfovibrio sp. ND132]
 gi|323457505|gb|EGB13370.1| SNF2-related protein [Desulfovibrio desulfuricans ND132]
          Length = 1069

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 24/217 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 850  KKLKDQVLKDVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             ++         ++V   F   L  ++          A+  G + D+     +      I
Sbjct: 910  DLVVDIIEGGHKVLVFSQFVQMLHVIRNWLQIREIPFAYLDGSSKDRFEQVDRFNENPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+     Q  +R       + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
            +I QNT++E +L+    K  + + ++   +ALK  T 
Sbjct: 1024 MIRQNTVEERILKLQEQKKDVAEAIIPGQSALKSLTR 1060


>gi|303248715|ref|ZP_07334968.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
 gi|302489880|gb|EFL49808.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
          Length = 1072

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 83/218 (38%), Gaps = 26/218 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++   +  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 853  KKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLPSGKFDAFK 912

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGK- 108
             +I         ++V   F   L  ++          A+  G + D+    +  +NE + 
Sbjct: 913  DLITDCIEEGHKVLVFSQFVQMLHIIRSWVTISQIPFAYLDGSSKDRFDQ-VDRFNEDEN 971

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +      + G GLNL    + ++ +  WW+     Q  +R       + G +R VF Y
Sbjct: 972  IKVFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQQRQVFSY 1025

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
             +I QNT++E +L+    K  + + ++   +A K  T 
Sbjct: 1026 KMICQNTVEEKILKLQEQKKDVAEAIIPGQDAFKSLTR 1063


>gi|282865750|ref|ZP_06274800.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282559394|gb|EFB64946.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 957

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A Y  EE+        K++ L
Sbjct: 730 LYEAVVRETMAEISGADGFARRGLVVKLLTALKQICNHPAQYLKEEEPRIADRSGKVELL 789

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   A  A ++V   +      L++              G  + +    +  +  G
Sbjct: 790 DELLDTILAEGASVLVFTQYVRMGRLLEQHLAVRGVRTQFLHGGTPVAEREAMVNRFQAG 849

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL   G+ +V F  WW+     Q  +R       + G  + V V
Sbjct: 850 DAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEAQATDR-----AYRIGQTQPVQV 903

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + LIA+ TI++ +   L  K  + D +L  
Sbjct: 904 HRLIAEGTIEDRIAGMLARKQGLADAVLGG 933


>gi|300718555|ref|YP_003743358.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
 gi|299064391|emb|CAX61511.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
          Length = 877

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+         +K  K  H  K+  L  +++   A    I++   F + L+ + +   +
Sbjct: 689 RQICCDPRLVKTDKAAKVKHSAKLALLREMLDDLLAEDRRILIFSQFTTMLSLIAEELQK 748

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D+    ++ + EG++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 749 ARIPFVTLTGSTRDRIE-PVRRFQEGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 806

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  +I+E ++     K+ + D +L 
Sbjct: 807 AAENQATDR-----AYRLGQDKPVFVYKLIAAGSIEEKIVALQGQKAELADSILE 856


>gi|107100261|ref|ZP_01364179.1| hypothetical protein PaerPA_01001285 [Pseudomonas aeruginosa PACS2]
          Length = 773

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 573 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 632

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 633 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 690

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 691 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 745

Query: 194 LLN 196
           L +
Sbjct: 746 LFS 748


>gi|310827837|ref|YP_003960194.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
 gi|308739571|gb|ADO37231.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
          Length = 1029

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 27/204 (13%)

Query: 8    QRELYCDLQGENIE--AFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVII 63
            + +L  +L G + E       +   +  Q+      VY D           K++    I+
Sbjct: 817  REDLAYELDGGDFERRKLIILAMLTRLRQICCDPSLVYEDYTDV-----SAKLELCLEIL 871

Query: 64   EK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPL 111
            +   A+   +++   F S L  ++K   +         GRT  ++    +  +NE   P+
Sbjct: 872  DTSLASGHKVLLFSQFTSMLEIIEKELIKREIDFYKITGRTKAQERLRQVNAFNEDDTPV 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G ++++ +  WW+L    Q  +R       + G   +V VY LI
Sbjct: 932  FLISLKAGGTGLNLT-GADVVIHYDPWWNLSAQNQATDR-----AHRIGQTNSVQVYNLI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
            A+++I+E + +  + K+ + D ++
Sbjct: 986  AKDSIEEKIQKMQQAKAELADSII 1009


>gi|239623482|ref|ZP_04666513.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521513|gb|EEQ61379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1088

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 86/208 (41%), Gaps = 26/208 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
            MK   K +   + +     +      ++ ++  QL     + Y+  KH       K++  
Sbjct: 869  MKLKEKLESGGFSESGDGRL---QILAELMRLRQLCCDPRLCYENYKH----ESAKLETC 921

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
              ++ +  +    I++   F S L  ++K   +            + ++    + E+   
Sbjct: 922  MDLVRRGISGEHKILLFSQFTSMLELIEKRLSKEGMASHKLTGATSKEERIRMVGEFQRD 981

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +P+      + G GLNL    +I++ +  WW++    Q  +R       + G ++ V V
Sbjct: 982  DVPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVAAQNQATDR-----THRIGQEKQVTV 1035

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y LI +NTI+E +L+   +K  + D ++
Sbjct: 1036 YKLITRNTIEENILKLQESKQYLADQIV 1063


>gi|296390849|ref|ZP_06880324.1| helicase [Pseudomonas aeruginosa PAb1]
          Length = 773

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 573 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 632

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 633 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 690

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 691 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 745

Query: 194 LLN 196
           L +
Sbjct: 746 LFS 748


>gi|313105624|ref|ZP_07791890.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310878392|gb|EFQ36986.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 773

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 573 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 632

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 633 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 690

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 691 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 745

Query: 194 LLN 196
           L +
Sbjct: 746 LFS 748


>gi|229828003|ref|ZP_04454072.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
 gi|229792597|gb|EEP28711.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
          Length = 1314

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y      +   + G   EA+N       ++  K  Q+      + E          K 
Sbjct: 1094 RLYDAQVARMRAMIAGAG-EAYNRNKIQVLAELTKIRQICCDPSIFVEG---YRGKSAKR 1149

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW 104
            KA   +I  A      ++V   F S LA L++   + +            ++    +  +
Sbjct: 1150 KACLDLIGSAIDGGHKMLVFSQFTSMLALLEEDLSRAKIPFYKITGATGKEERLRLVHAF 1209

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+ + P+      + G GLNL  G ++++ +  WW+L    Q  +R       + G  + 
Sbjct: 1210 NDDETPVFLISLKAGGTGLNLT-GADLVIHYDPWWNLAAQNQATDR-----AHRIGQTKD 1263

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ LIA+ TI++ +L+    K  + D +L+ 
Sbjct: 1264 VSVFRLIAKGTIEDRILEMQEKKKDLADAILSG 1296


>gi|113970955|ref|YP_734748.1| SNF2-like protein [Shewanella sp. MR-4]
 gi|113885639|gb|ABI39691.1| SNF2-related protein [Shewanella sp. MR-4]
          Length = 1082

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 5    HKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KA 58
             K  REL+    + G +IE  ++    +K  Q          E+  K  ++ K+    + 
Sbjct: 869  EKKIRELFASQGVAGSHIEFLDA---LLKLRQACCDPRLVKLEQAQKVKNNAKLNWLSQN 925

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKI 109
            L  ++++     I++   F S L  +++             G+T  +    I ++ EG  
Sbjct: 926  LPEMVQE--GRKILIFSQFTSMLILIEELLQSLDIDYSKLTGQTRLRQGQ-IDKFQEGDT 982

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+    +Q  +R       + G +  VFVY 
Sbjct: 983  PVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQENPVFVYK 1036

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIA+ T++E + +  + K  + D +L  
Sbjct: 1037 LIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|229589086|ref|YP_002871205.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|229360952|emb|CAY47812.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 897

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 78/181 (43%), Gaps = 19/181 (10%)

Query: 29  TVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
            +K  Q+       ++     +     K+ +L  ++E+       I++   F S L+ ++
Sbjct: 697 LLKLRQVCCDLRLVNDATLPARGSSSGKLDSLMTMLEELFEEGRRILLFSQFTSMLSLIE 756

Query: 86  ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                     A   G+T D+    ++++  GK+ +      + G GLNL    + ++ + 
Sbjct: 757 VELKKRGVAYALLTGQTRDRR-TPVKDFQSGKLQIFLISLKAGGVGLNLTE-ADTVIHYD 814

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G ++ VFVY +IA+ T++E +    + KS +   +L+
Sbjct: 815 PWWNPATENQATDR-----AYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLD 869

Query: 197 A 197
            
Sbjct: 870 G 870


>gi|302671400|ref|YP_003831360.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
 gi|302395873|gb|ADL34778.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
          Length = 1034

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 25/185 (13%)

Query: 26   ASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
             S+  +  QL    G +Y +           K      +I  A  +   +++   F S L
Sbjct: 842  LSELTRLRQLCCDPGLIYDNYTGG-----SAKADLCLEMIRSAAESGHKVLLFSQFTSML 896

Query: 82   AR---------LQKAFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             R         ++     G T  +D    +  + E   P+      + G GLNL    +I
Sbjct: 897  ERLTAILKKEGIKHYLLTGSTQKEDRIRMVDAFQEDDTPVFCISLKAGGTGLNLT-AADI 955

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ +  WW++    Q  +R       + G K  V VY LI QNTI+E ++     K  + 
Sbjct: 956  VIHYDHWWNIAVENQATDR-----AHRIGQKNVVTVYRLIMQNTIEERIILLQNKKKELA 1010

Query: 192  DLLLN 196
            D LLN
Sbjct: 1011 DQLLN 1015


>gi|114048179|ref|YP_738729.1| SNF2-like protein [Shewanella sp. MR-7]
 gi|113889621|gb|ABI43672.1| SNF2-related protein [Shewanella sp. MR-7]
          Length = 1082

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 5    HKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KA 58
             K  REL+    + G +IE  ++    +K  Q          E+  K  ++ K+    + 
Sbjct: 869  EKKIRELFASQGVAGSHIEFLDA---LLKLRQACCDPRLVKLEQAQKVKNNAKLNWLSQN 925

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKI 109
            L  ++++     I++   F S L  +++             G+T  +    I ++ EG  
Sbjct: 926  LPEMVQE--GRKILIFSQFTSMLILIEELLQSLDIDYSKLTGQTRLRQGQ-IDKFQEGDT 982

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+    +Q  +R       + G +  VFVY 
Sbjct: 983  PVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQENPVFVYK 1036

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIA+ T++E + +  + K  + D +L  
Sbjct: 1037 LIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|283796858|ref|ZP_06346011.1| protein, SNF2 family [Clostridium sp. M62/1]
 gi|291075264|gb|EFE12628.1| protein, SNF2 family [Clostridium sp. M62/1]
          Length = 449

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 91/209 (43%), Gaps = 21/209 (10%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y + +RE + +L+ G  I A    +K ++  Q   G +  D E+  + V   K+ ALE 
Sbjct: 241 IYDRIKRESFAELESGGQISATTVLTKLLRLQQFTGGFLVADGEEKPELVSKGKLNALEE 300

Query: 62  IIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EG 107
           I++         +++   F  ++  + +   + +           L+     ++++    
Sbjct: 301 IVDDYVVDAGKKLVIFARFRPEIDIIGQMLKKKKLRYGEIYGDVKLEDRGDIVKDFQTNP 360

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +  A   + G G+ L    +  V++S+ ++   + Q + RI      + G K A   
Sbjct: 361 ETMVFLAQIDTAGLGITLT-AADTCVYYSVNFNYAAYSQSLARI-----HRIGQKNACTY 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +LI + TIDE+VL+ L  K  +   +++
Sbjct: 415 IHLITEGTIDEVVLKALAKKEDLAKTVVD 443


>gi|239908234|ref|YP_002954975.1| putative helicase [Desulfovibrio magneticus RS-1]
 gi|239798100|dbj|BAH77089.1| putative helicase [Desulfovibrio magneticus RS-1]
          Length = 1075

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 24/217 (11%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++   +  + +     +     +K  Q+      +  D       +   K  A +
Sbjct: 856  KKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLPSGKFDAFK 915

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +      I
Sbjct: 916  DLITDCIEEGHKVLVFSQFVQMLHIIRSWMSISQMPFCYLDGSSKDRFDQVDKFNQTEDI 975

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y 
Sbjct: 976  KVFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVENQATDR-----THRIGQLRQVFSYK 1029

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
            LI QNT++E +L+    K  + + ++   +A K  T 
Sbjct: 1030 LICQNTVEEKILKLQEQKKDVAEAVIPGQDAFKSLTR 1066


>gi|94986612|ref|YP_594545.1| SNF2 family DNA/RNA helicase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730861|emb|CAJ54224.1| Superfamily II DNA/RNA helicases, SNF2 family [Lawsonia
            intracellularis PHE/MN1-00]
          Length = 1073

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 22/207 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEK-HWKEVHDEKIKAL 59
             K + ++  D++ + I     +     +K  Q+      +  D        +   K +A 
Sbjct: 853  KKLRSQVLADIETKGIAKSQMSILDALLKLRQICCHPRLLKVDMPGFSIGSLASGKFEAF 912

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGK 108
            + +I         ++V   F   L  ++           +  G + D+     +  N  +
Sbjct: 913  KDMIFDIVEGGHKVLVFSQFVQMLQLIKSWLQITDIPFCYLDGTSKDRLEQVDKFNNTPE 972

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G GLNL    + ++ +  WW+     Q  +R       + G  R VF Y
Sbjct: 973  IPVFLISLKAGGTGLNLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSY 1026

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI QNT++E +L+    K  + + ++
Sbjct: 1027 KLICQNTVEEKILKLQEMKRGVAEAII 1053


>gi|126660084|ref|ZP_01731204.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618604|gb|EAZ89353.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   +           +  +K  +         +   +  +   K+
Sbjct: 1180 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLILD---YSSLKGSKL 1236

Query: 57   KALEVIIEKA--NAAPIIVAYHF-------NSDLAR--LQKAFPQGRTLDKDPCT-IQEW 104
            +  + I+E+   N    +V   F        S L R  +   +  G T  K+    ++ +
Sbjct: 1237 QLFQEILEELLDNRHKALVFSQFVDHLQIVKSHLERQKISYQYLDGSTPKKERQRRVKAF 1296

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1297 QSGEGDVFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQATDR-----AYRIGQQRP 1350

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 1351 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 1383


>gi|298528450|ref|ZP_07015854.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512102|gb|EFI36004.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1068

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 25/208 (12%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             K + ++   +  + I A   +     +K  Q+      +  +       +   K +A +
Sbjct: 849  KKLKEQVLQRVDEKGISASQMSILDALLKLRQICCHPRLLRLNMPGLNNNIPSGKFEAFK 908

Query: 61   V----IIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEG 107
                 IIE  +   ++V   F   L  ++          A+  G + D+        N  
Sbjct: 909  DLTTNIIE--DGHKVLVFSQFVQMLHIIRSWLNMNEIPHAYLDGSSKDRLEQVDLFNNNP 966

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             IP+      + G GLNL    + ++ +  WW+     Q  +R       + G  + VF 
Sbjct: 967  DIPVFLISLKAGGTGLNLT-AADYVIHYDPWWNPAVENQATDR-----THRIGQTKQVFS 1020

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y +I +NT++E +L+    K  + + ++
Sbjct: 1021 YKMICENTVEEKILKLQEQKKGVAEAVI 1048


>gi|225376574|ref|ZP_03753795.1| hypothetical protein ROSEINA2194_02216 [Roseburia inulinivorans DSM
            16841]
 gi|225211611|gb|EEG93965.1| hypothetical protein ROSEINA2194_02216 [Roseburia inulinivorans DSM
            16841]
          Length = 1098

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 81/214 (37%), Gaps = 26/214 (12%)

Query: 1    MKQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            +  Y    +++   L G++            ++  K  QL        E+    +    K
Sbjct: 876  LALYDAHVQQMKQMLDGKSEAEFKSNKIQILAELTKLRQLCCDPALLFED---YKGESAK 932

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
            ++    +I  A      +++   F + L RL +   +              +K    +  
Sbjct: 933  VQMCMDLIGNAVHGGHKVLLFSQFTTMLDRLAEQLTKLGIDYYMLTGSVNKEKRMQMVDS 992

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+  +P+      + G GL+L    +I++ +  WW++    Q  +R       + G K 
Sbjct: 993  FNKDDVPVFCISLKAGGTGLSLT-AADIVIHYDPWWNVAVQNQATDR-----AHRIGQKN 1046

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V VY L++Q TI+E ++     K  + + +L  
Sbjct: 1047 VVTVYKLVSQGTIEEKIIDIQEKKKKLAEQVLEG 1080


>gi|114562478|ref|YP_749991.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
 gi|114333771|gb|ABI71153.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
          Length = 1070

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK----IKALE 60
             K  REL+   +G +          +K  Q          E+  +   + K    I+ L 
Sbjct: 857  EKKLRELFAK-KGVSSSHIEFLDALLKLRQACCDPRLVKLEQAQQVKDNAKMTWLIQNLP 915

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPL 111
             +IE+     I++   F   LA ++    +         G+T D+    I  + EG   +
Sbjct: 916  EMIEE--GRKILIFSQFTGMLALIEDELKRLTISYSKLTGQTRDRQTQ-IDAFQEGDNSV 972

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    + ++ F  WW+        ER    R  + G    VFVY LI
Sbjct: 973  FLISLKAGGTGLNLT-AADTVIHFDPWWN-----PAAERQATDRAHRIGQLNPVFVYKLI 1026

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T++E + +  + K  + D +L+
Sbjct: 1027 AQGTVEEKIQEMQQHKQGLADSILS 1051


>gi|254239157|ref|ZP_04932480.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
 gi|126171088|gb|EAZ56599.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
          Length = 663

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 463 LLKLRQVCCDTRLLQRQEDGTRSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 522

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 523 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 580

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 581 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 635

Query: 194 LLN 196
           L +
Sbjct: 636 LFS 638


>gi|329904224|ref|ZP_08273705.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
 gi|327548098|gb|EGF32821.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
          Length = 1101

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q+         ++        K++     L  +IE+     +++   F   LA +
Sbjct: 904  LLKLRQVCCDPRLVKLDQATNVKESAKLELLLSMLPDMIEE--GRKVLLFSQFTGMLALV 961

Query: 85   QKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             KA  +                  ++ + EG++PL      + G GLNL    + ++ + 
Sbjct: 962  AKAVEKAGIPYVLLTGDTTDRATPVRRFQEGEVPLFLISLKAGGVGLNLT-AADTVIHYD 1020

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+     Q  +R       + G ++ VFVY LI   +I+E ++     K+ + + +L+
Sbjct: 1021 PWWNPAAENQATDR-----AHRLGQEKPVFVYKLIVAGSIEEKIVALQDKKAALAEGILS 1075


>gi|330808509|ref|YP_004352971.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
 gi|327376617|gb|AEA67967.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1096

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 20/182 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
             +K  Q+       +  +  K +     K+ +L  ++E+  +    I++   F S L+ +
Sbjct: 899  LLKLRQVCCDLRLLNTVQTAKALRSGSGKLISLMEMLEELLSEGRKILLFSQFTSMLSLI 958

Query: 85   QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            ++   +         G T D+    ++E+  GK+ L      + G GLNL    + ++ F
Sbjct: 959  EEELQKRSLTYSLLTGSTTDRR-TPVREFQSGKVSLFLISLKAGGTGLNLT-AADTVIHF 1016

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              WW+     Q  +R       + G  + VFVY LIA+ T++E +      K+ +   LL
Sbjct: 1017 DPWWNPAVENQATDR-----AYRIGQNKPVFVYKLIARGTVEEKIQALQEDKAALAGSLL 1071

Query: 196  NA 197
            + 
Sbjct: 1072 DG 1073


>gi|254497098|ref|ZP_05109919.1| DNA helicase [Legionella drancourtii LLAP12]
 gi|254353678|gb|EET12392.1| DNA helicase [Legionella drancourtii LLAP12]
          Length = 1091

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
             +K  Q+     +    E         K++ L  +++        ++V   F S L  ++
Sbjct: 897  LLKLRQICCDPRLLSLPEATMAHGTSGKLETLMELLDNLVGEGRRVLVFSQFTSMLQLIE 956

Query: 86   KAFPQGRTLD---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                Q R  D              ++++ EGK P+      + G GLNL    + ++ + 
Sbjct: 957  NEL-QARHYDYLKLTGQTQNRQAMVEKFQEGKTPVFLISLKAGGTGLNLTR-ADTVIHYD 1014

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+     Q  +R       + G +  VFVY LI   T++E +L     K  + D +L+
Sbjct: 1015 PWWNPAVEDQATDR-----THRIGQENPVFVYKLITAGTVEEAILGMQERKRQLVDGILS 1069

Query: 197  A 197
            A
Sbjct: 1070 A 1070


>gi|116048717|ref|YP_792483.1| helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583938|gb|ABJ09953.1| probable helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 663

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 463 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 522

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 523 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 580

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 581 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 635

Query: 194 LLN 196
           L +
Sbjct: 636 LFS 638


>gi|225166221|ref|ZP_03727929.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
 gi|224799535|gb|EEG18056.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
          Length = 552

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 23/209 (11%)

Query: 5   HKFQRELY-CDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + +REL   +  G +  A   A+ T  ++  Q+                   K++A   
Sbjct: 333 ERSERELLDLETGGASESALRLATLTQLLRLRQICCDPRLV-APDSAAPADSAKLEAFRE 391

Query: 62  IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGK 108
           ++ +A  +   ++V   F S LA L+  F + +          T  +    +  +N    
Sbjct: 392 LLAEAIDDGHRLLVFSQFTSLLALLRAEFDEQQLPYCYLDGTMTPRQRQAEVDRFNTNDD 451

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           IPL      + G GLNL  G + +V F  WW+     Q  +R       + G  R V  Y
Sbjct: 452 IPLFLISLKAGGTGLNLT-GADTVVHFDPWWNPAAEAQATDR-----AHRIGQTRVVTSY 505

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI   T++E VLQ    K  +   +  A
Sbjct: 506 KLICTGTVEEKVLQLQEQKRALLANVFEA 534


>gi|256827746|ref|YP_003151705.1| DNA/RNA helicase, superfamily II, SNF2 family [Cryptobacterium curtum
            DSM 15641]
 gi|256583889|gb|ACU95023.1| DNA/RNA helicase, superfamily II, SNF2 family [Cryptobacterium curtum
            DSM 15641]
          Length = 1102

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 24   NSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
               ++  +  QL      VY D           K+ A+  I+E +       +V   F S
Sbjct: 907  EVLAEITRLRQLCCDPALVYDD-----YRGPASKLDAIADIVEGSRDAGEKTLVFSQFTS 961

Query: 80   DLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             L+R+ +   +                    +  +N  ++P+      + G GLNL  G 
Sbjct: 962  FLSRIAQRLDEMDIAYHTITGATPKQTRVQLVNAFNSDEVPVFLISLKAGGTGLNLT-GA 1020

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            +++V    WW+     Q  +R       + G KR V VY LI  +TI+E +++   TK T
Sbjct: 1021 SVVVHADPWWNAAAEDQATDR-----AHRIGQKRDVTVYKLIEHDTIEERIVKLQETKHT 1075

Query: 190  IQDLLLNA 197
              D ++ A
Sbjct: 1076 FVDQIIGA 1083


>gi|117921236|ref|YP_870428.1| SNF2-like protein [Shewanella sp. ANA-3]
 gi|117613568|gb|ABK49022.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 1082

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 5    HKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KA 58
             K  REL+    + G +IE  ++    +K  Q          E+  K  ++ K+    + 
Sbjct: 869  EKKIRELFATQGVAGSHIEFLDA---LLKLRQACCDPRLVKLEQAQKVKNNAKLNWLNQN 925

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKI 109
            L  ++++     I++   F S L  +++             G+T  +    I ++ EG  
Sbjct: 926  LPEMVQE--GRKILIFSQFTSMLLLIEELLQSLNIDYSKLTGQTRLRQGQ-IDKFQEGDT 982

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+    +Q  +R       + G +  VFVY 
Sbjct: 983  PVFLISLKAGGTGLNLT-AADTVIHYDPWWNPAAEKQATDR-----AHRIGQENPVFVYK 1036

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIA+ T++E + +  + K  + D +L  
Sbjct: 1037 LIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|254245052|ref|ZP_04938374.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
 gi|126198430|gb|EAZ62493.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
          Length = 663

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 463 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 522

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 523 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 580

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 581 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 635

Query: 194 LLN 196
           L +
Sbjct: 636 LFS 638


>gi|266620561|ref|ZP_06113496.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
 gi|288867854|gb|EFD00153.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
          Length = 1154

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 3    QYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEK 55
             Y    ++L   L  ++     +      ++     QL      VY +           K
Sbjct: 925  IYEARVQKLLDSLSKQSQEEFRVGKLQILAELTHLRQLCCDPSLVYENYNGGA-----AK 979

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            +     +++ A      I++   F S L  ++K   +            + +K    ++ 
Sbjct: 980  VDTCVELVKNAVEAGNKILLFSQFTSMLDIIRKRLDEEEIGYYILTGAVSKEKRSELVRA 1039

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NE   P+      + G GLNL    +I++ F  WW+     Q  +R       + G ++
Sbjct: 1040 FNEDDTPVFLISLKAGGTGLNLT-AASIVIHFDPWWNQAAQNQATDR-----AHRIGQQQ 1093

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V VY LI ++T++E +L+    K+ + + ++
Sbjct: 1094 VVTVYKLIMKDTLEEKILEMQEKKAGLSEEII 1125


>gi|15595996|ref|NP_249490.1| helicase [Pseudomonas aeruginosa PAO1]
 gi|218893257|ref|YP_002442126.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|9946691|gb|AAG04188.1|AE004515_4 probable helicase [Pseudomonas aeruginosa PAO1]
 gi|218773485|emb|CAW29297.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 663

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  + +   K+  L  ++++  A    +++   F S LA
Sbjct: 463 LLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 522

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  GK+P+      + G GLNL    + ++
Sbjct: 523 LIEDALRQRGVDYVLLTGETRDRR-APVQRFQSGKVPVFLISLKAGGVGLNLT-AADTVI 580

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 581 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 635

Query: 194 LLN 196
           L +
Sbjct: 636 LFS 638


>gi|227546637|ref|ZP_03976686.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212954|gb|EEI80833.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 1394

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1211

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1212 KLAAITDLVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1271

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1272 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1325

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1326 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|317484163|ref|ZP_07943092.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924512|gb|EFV45669.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1343

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 27/212 (12%)

Query: 4    YHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +R     L+    E       F+  ++ +K  +     V  D       +   K+ 
Sbjct: 1125 YEALRRNALASLEAAKQEDAEGSQKFSILTELMKLRRACCAPVLIDPG---TSLTGAKLS 1181

Query: 58   ALEVIIEKA--NAAPIIVAYHFN---SDLARLQKA------FPQGRTLDKDPCT-IQEWN 105
            A   ++E+        +V   F    S+  RL  A      +  G T D++    +  + 
Sbjct: 1182 AFMELVEELVRGGHKALVFSQFVGCLSEARRLLDAAGYGYQYLDGSTPDRERQAAVAAFQ 1241

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             GK  L      + G GLNL    + ++    WW+     Q  +R       + G +R V
Sbjct: 1242 SGKGDLFLISLKAGGQGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AYRLGQQRPV 1295

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+A+ T++E +L+  R+K  +   +L  
Sbjct: 1296 TVYRLVARGTVEESILKLHRSKRALAADVLEG 1327


>gi|290962297|ref|YP_003493479.1| hypothetical protein SCAB_79891 [Streptomyces scabiei 87.22]
 gi|260651823|emb|CBG74949.1| putative helicase (fragment) [Streptomyces scabiei 87.22]
          Length = 953

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCL----QLANG-AVYYDEEKHWKEVHDEKIK 57
            Y    RE   ++     +        +K L    Q+ N  A Y  EE+        K +
Sbjct: 726 LYEALVRETMAEI--ARADGMERRGLIMKLLTGLKQICNHPAQYLKEERPRVPGRSGKTE 783

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
            L+ +++   +  A ++V   +      L++              G  + +    ++ + 
Sbjct: 784 LLDELLDTILSEGAGVLVFTQYVRMARLLERHLAARGVPTLFLHGGTPVTERESMVERFQ 843

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V
Sbjct: 844 AGEVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPV 897

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LIA+ TI++ +   L +K  + D +L  
Sbjct: 898 QVHRLIAEGTIEDRIADMLLSKRKLADAVLGG 929


>gi|24373219|ref|NP_717262.1| Snf2 family protein [Shewanella oneidensis MR-1]
 gi|24347445|gb|AAN54706.1|AE015611_4 Snf2 family protein [Shewanella oneidensis MR-1]
          Length = 1070

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 27/208 (12%)

Query: 5    HKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KA 58
             K  REL+    + G +IE  ++    +K  Q          E+  K  ++ K+    + 
Sbjct: 857  EKKIRELFATQGVAGSHIEFLDA---LLKLRQACCDPRLVKLEQAQKVKNNAKLNWLSQN 913

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKI 109
            L  ++++     I++   F S L  +++             G+T  +    I ++ EG  
Sbjct: 914  LPEMVQE--GRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQVQ-IDKFQEGDT 970

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+        ER    R  + G +  VFVY 
Sbjct: 971  PVFLISLKAGGTGLNLT-AADTVIHYDPWWN-----PAAERQATDRAHRIGQENPVFVYK 1024

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIA+ T++E + +  + K  + D +L  
Sbjct: 1025 LIAEGTVEEKIQEMQQHKQGLADSILEG 1052


>gi|317484825|ref|ZP_07943719.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923919|gb|EFV45111.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1073

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 22/207 (10%)

Query: 5    HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGA--VYYDEEKHWK-EVHDEKIKAL 59
             K + ++  D++ + +     +     +K  Q+      +  D        +   K +A 
Sbjct: 853  RKLRDQVLADVESKGMAKSQMSILDALLKLRQICCHPRLLKVDMPGFSTGSLPSGKFEAF 912

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGK 108
            + +I         ++V   F   L  ++           +  G + D+     +  N  +
Sbjct: 913  KDMIFDVVEGGHKVLVFSQFVQMLQIIRGWLQLTDIPFCYLDGTSKDRLDQVDRFNNSPE 972

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G G+NL    + ++ +  WW+     Q  +R       + G  R VF Y
Sbjct: 973  IPIFLISLKAGGTGINLT-SADYVIHYDPWWNPAVESQATDR-----THRIGQTRQVFSY 1026

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI QNT++E +L+    K  + + ++
Sbjct: 1027 KLICQNTVEEKILKLQEMKRGVAEAVI 1053


>gi|194364294|ref|YP_002026904.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194347098|gb|ACF50221.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1104

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 18/203 (8%)

Query: 7    FQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             ++++   +    +   +       +K  Q+         E   +     K++ L  ++ 
Sbjct: 871  MEKQVREAISDSGLARSHIRVLDALLKLRQVCCDPRLLPGETPARNAGSAKLELLREMLP 930

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCT----IQEWNEGKIPLLFA 114
                    I++   F   LA + +A         TL  D       +Q + +G++PL   
Sbjct: 931  SMVEEGRRILLFSQFTGMLALIAQALDGLGLAYVTLTGDTQDRVTPVQRFMQGEVPLFLI 990

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ F  WW+     Q  +R       + G ++ VFVY LIA  
Sbjct: 991  SLKAGGVGLNLT-AADTVIHFDPWWNPAAENQASDR-----AHRIGQQQPVFVYRLIAAG 1044

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +I+E + +    K+ + + +L  
Sbjct: 1045 SIEERIAELQERKAMLAESILEG 1067


>gi|296454690|ref|YP_003661833.1| SNF2-like protein [Bifidobacterium longum subsp. longum JDM301]
 gi|296184121|gb|ADH01003.1| SNF2-related protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 1420

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1183 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1237

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1238 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1297

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1298 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1351

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1352 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1386


>gi|213691499|ref|YP_002322085.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|213522960|gb|ACJ51707.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|320457574|dbj|BAJ68195.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1423

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1186 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1240

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1241 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1300

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1301 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1354

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1355 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1389


>gi|317482426|ref|ZP_07941443.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916086|gb|EFV37491.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1394

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1211

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1212 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1271

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1272 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1325

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1326 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|23466281|ref|NP_696884.1| helicase [Bifidobacterium longum NCC2705]
 gi|322689764|ref|YP_004209498.1| helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691713|ref|YP_004221283.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23327031|gb|AAN25520.1| possible helicase [Bifidobacterium longum NCC2705]
 gi|320456569|dbj|BAJ67191.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461100|dbj|BAJ71720.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1394

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1211

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1212 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1271

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1272 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1325

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1326 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|295092105|emb|CBK78212.1| Superfamily II DNA/RNA helicases, SNF2 family [Clostridium cf.
            saccharolyticum K10]
          Length = 1085

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++     +++   +LQ   +      ++  +  Q+        E          K++   
Sbjct: 870  VRLMESLEKQSDEELQKGKL---QILAELTRLRQICCAPEMLYEN---YSETSCKVETCM 923

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             +I +A      I++   F S    L+K   Q +            +      +++N G 
Sbjct: 924  ELIHQAMSGNHKILLFSQFTSVFPILEKRLLQEKIPYYELTGQTSKENRMRMTEQFNSGD 983

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL    +I++ F  WW+L    Q  +R       + G ++ V V+
Sbjct: 984  VPVFLISLKAGGTGLNLT-AASIVIHFDPWWNLAAQNQATDR-----AHRIGQEKQVTVF 1037

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 1038 KLIAQNTIEEKIIKLQQEKQKLSSQILDG 1066


>gi|189440776|ref|YP_001955857.1| superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
 gi|189429211|gb|ACD99359.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1394

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1211

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1212 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1271

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1272 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1325

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1326 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|291547356|emb|CBL20464.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus sp.
            SR1/5]
          Length = 1130

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 49/231 (21%)

Query: 5    HKFQRELYCDLQGENIEAFNS------------------------ASKTVKCLQLAN--G 38
             K +++++  L+ E  E + +                         ++  +  Q+    G
Sbjct: 892  DKLEKDMFSPLESEQKELYEAHTERFRLMLGMQSDAEFRTSKLQILAEITRLRQICCYPG 951

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
             VY   + +       K++    +++ A      I++   F + L  L     + +    
Sbjct: 952  LVYEGYKGN-----SSKLEMCMELVQNAVNGGHKILLFSQFTTMLDVLAVRLKKAKVSFY 1006

Query: 94   -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +K    +  +NE    +      + G GLNL    +I++ +  WW+L    Q
Sbjct: 1007 MLTGSTSKEKRAQMVHAFNEDDTSVFCISLKAGGTGLNLT-AADIVIHYDPWWNLAVQNQ 1065

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +R       + G +  V VY L  ++TI+E +      K  + D +LN 
Sbjct: 1066 ATDR-----AHRIGQQNVVSVYRLFMKDTIEERIRALQERKRELADEILNG 1111


>gi|326774662|ref|ZP_08233927.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654995|gb|EGE39841.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1039

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             Y    RE   ++   +                Q+ N  A Y  EE+        K++ L
Sbjct: 812  LYEAVVRETLAEISAADGFERRGLVMKLLTALKQICNHPAQYLKEEQPRIADRSGKVELL 871

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
            + +++   A    ++V   +      L++              G  + +    +  +  G
Sbjct: 872  DELLDTILAERGSVLVFTQYVQMARLLEEHLAARGVATQFLHGGTPVARREEMVNRFQSG 931

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GLNL   G+ +V F  WW+     Q  +R       + G  + V V
Sbjct: 932  EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEAQATDR-----AYRIGQTQPVQV 985

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + LIA+ TI++ + + L  K  + D +L + + 
Sbjct: 986  HRLIAEGTIEDRIAEMLTRKQGLADAVLGSGEA 1018


>gi|71909481|ref|YP_287068.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
 gi|71849102|gb|AAZ48598.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
          Length = 1091

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +  +   ++ E      +          +K  Q+             K     K+
Sbjct: 865  LYETVRAAMDAKVRDEIASKGFARSQIVILDALLKLRQVCCDPRLVKASSARKVTERAKL 924

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
              L  ++ +       ++V   F S LA ++    +                  I+ + +
Sbjct: 925  DLLMAMLPELVDEGRRVLVFSQFTSMLALIEHELDKAGITYVTLTGDTVDREVPIRRFQD 984

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++P+      + G GLNL    + ++ +  WW+     Q  +R       + G  + VF
Sbjct: 985  CEVPIFLISLKAGGVGLNLT-AADTVIHYDPWWNPAVENQATDR-----AHRLGQDKPVF 1038

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY LI   +I+E +L     K+ +   +L+
Sbjct: 1039 VYKLIVSGSIEEKILALQERKAELAAGILS 1068


>gi|239621668|ref|ZP_04664699.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239515543|gb|EEQ55410.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1388

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1151 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1205

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1206 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1265

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1266 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1319

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1320 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1354


>gi|318059790|ref|ZP_07978513.1| SNF2-like protein [Streptomyces sp. SA3_actG]
 gi|318075191|ref|ZP_07982523.1| SNF2-like protein [Streptomyces sp. SA3_actF]
          Length = 951

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 85/214 (39%), Gaps = 21/214 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKA 58
           + Y +  R    +++     A +           Q+ N    + +E   +      K+  
Sbjct: 724 RLYEEQVRATMAEIRSAKGIARSGLVLRLLTGLKQICNHPAQFLKEGEPELSGRSGKLAL 783

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+ +++   A    ++V   + +    L++   +          G  + +    ++ + +
Sbjct: 784 LDELLDTILAADGAVLVFTQYVAMARLLERHLRERGIAAQLLHGGTPVPRREEMVRRFQD 843

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V 
Sbjct: 844 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEAQATDR-----AHRIGQTRPVQ 897

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ TI++ +   + +K  + D +L   ++
Sbjct: 898 VHRLIAEGTIEDRIAALMESKRELADAVLGGGER 931


>gi|302523347|ref|ZP_07275689.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
 gi|302432242|gb|EFL04058.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
          Length = 968

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 85/214 (39%), Gaps = 21/214 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKA 58
           + Y +  R    +++     A +           Q+ N    + +E   +      K+  
Sbjct: 741 RLYEEQVRATMAEIRSAKGIARSGLVLRLLTGLKQICNHPAQFLKEGEPELSGRSGKLAL 800

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+ +++   A    ++V   + +    L++   +          G  + +    ++ + +
Sbjct: 801 LDELLDTILAADGAVLVFTQYVAMARLLERHLRERGIAAQLLHGGTPVPRREEMVRRFQD 860

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V 
Sbjct: 861 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEAQATDR-----AHRIGQTRPVQ 914

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ TI++ +   + +K  + D +L   ++
Sbjct: 915 VHRLIAEGTIEDRIAALMESKRELADAVLGGGER 948


>gi|255038325|ref|YP_003088946.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254951081|gb|ACT95781.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 982

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 20/210 (9%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEE-KHWKEVHDE 54
           K Y + +   R L          + +         +  QLAN  V  D E  H     ++
Sbjct: 761 KAYEEAKAYYRNLILQSIDSEGMSKSQLVVLQGLTRLRQLANHPVMVDPEYAHDSGKFED 820

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQEWNEG 107
            +  L+ ++ + +   I   Y  + DL R       +  A+  G T D+        N+ 
Sbjct: 821 VLYKLQTVMSEDHKILIFSQYIKHLDLFRHYLDEKEINYAYLDGATRDRQEQVESFQNDE 880

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +      + G GLNL    + +     WW+     Q ++R       + G  R VF 
Sbjct: 881 NIKIFLISLKAGGLGLNLT-AADYVFILDPWWNPAIEAQAVDR-----AHRIGQDRTVFT 934

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y  I +N+++E +L   R+K  + D L+++
Sbjct: 935 YKFITKNSVEEKILALQRSKKQLADDLISS 964


>gi|187919690|ref|YP_001888721.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
 gi|187718128|gb|ACD19351.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
          Length = 1155

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 22/199 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            R++ CD +   ++   +A++     + +   G +            D  +  L  +IE+ 
Sbjct: 940  RQVCCDPRL--VKTLKAAAEANDVPEKSDRTGKIEKGARAMRSAKLDLLLSMLPELIEE- 996

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +++   F   L+ + +A  +         G T D+    ++ + +G++PL      
Sbjct: 997  -GRRVLLFSQFTGMLSLIAQALEEVGIPYMMLTGDTTDRV-TPVERFQKGEVPLFLISLK 1054

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++ +  WW+     Q  +R       + G  + VFVY LIA  +I+
Sbjct: 1055 AGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLGQDKPVFVYKLIAAGSIE 1108

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E +++    K+ + D +L+
Sbjct: 1109 EKIVELQEQKAGLADSILS 1127


>gi|116623003|ref|YP_825159.1| SNF2-like protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116226165|gb|ABJ84874.1| SNF2-related protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 1073

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 25/211 (11%)

Query: 2    KQYHKFQR----ELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + ++     L   +Q + I     +     ++  Q A      D  +   +    K
Sbjct: 851  KHYDELRKHYRENLLLRVQQQGIGKNKMHVLEALLRLRQAACHPGLLDAAR--IQEPSAK 908

Query: 56   IKALEV-IIE-KANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEW 104
            +  L   + E +      +V   F S         D A ++  +  G T D+        
Sbjct: 909  LDVLLDQLAELREEGHKALVFSQFTSLLAIVRDRLDAAGVRYEYLDGSTRDRQARVDTFQ 968

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+ +  L      + G GLNL      +     WW+     Q ++R       + G  R 
Sbjct: 969  NDPQCTLFLISLKAGGLGLNLT-AAEYVFLLDPWWNPAVEAQAVDR-----AHRIGQTRP 1022

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF Y LIA++T++E VL+  +TK  + D +L
Sbjct: 1023 VFAYRLIARDTVEEKVLELQKTKRELADAIL 1053


>gi|312134029|ref|YP_004001368.1| superfamily ii DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
 gi|311773336|gb|ADQ02824.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
          Length = 1286

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 1049 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 1103

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1104 KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 1163

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1164 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 1217

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1218 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1252


>gi|29826907|ref|NP_821541.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29604004|dbj|BAC68076.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 950

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 25/217 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
            Y    RE    +      A             Q+ N    Y +E   ++         K
Sbjct: 720 LYEAVVRETMAKIAEAEGIARRGLVLKLLTALKQICNHPAQYLKEHSLRQSTPLNGRSGK 779

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           +  L+ +++   A    ++V   +      L+K   +          G  +      +  
Sbjct: 780 LDLLDELVDTITAEGESVLVFTQYKQMATLLEKHLAERGVPTLFLHGGTPVTAREEMVDR 839

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  +
Sbjct: 840 FQRGEVPVFLLSLKAAGTGLNLTRATH-VVHYDRWWNPAVEDQATDR-----AYRIGQDK 893

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+ LIA+ T+++ V + L  K  + D ++ + + 
Sbjct: 894 PVQVHKLIAEGTVEDKVAKLLEAKRALADAVVGSGEA 930


>gi|261854732|ref|YP_003262015.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
 gi|261835201|gb|ACX94968.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
          Length = 1086

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKE----VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
             +K  Q+          K  +         K+  L  ++ +       I+V   F S LA
Sbjct: 887  LLKLRQVCCDPRLLPSSKTGQSAKRPTQSAKLDLLLTMLPELVDEGRRILVFSQFTSMLA 946

Query: 83   RLQKAFPQGR--------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             + +A  + +                ++++  G  P+      + G GLNL    + ++ 
Sbjct: 947  LISEALTKAKLAHSMLTGETRDRETVVRQFQNGDTPVFLISLKAGGVGLNLT-AADTVIH 1005

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +  WW+     Q  +R       + G  R VFVY L+ + +I+E +L     K+ + + +
Sbjct: 1006 YDPWWNPAAEDQATDR-----AHRIGQTRQVFVYKLVTEGSIEEKILALQDKKAKLAEGV 1060

Query: 195  LNA 197
            L+ 
Sbjct: 1061 LSG 1063


>gi|257791730|ref|YP_003182336.1| Non-specific serine/threonine protein kinase [Eggerthella lenta DSM
            2243]
 gi|317487799|ref|ZP_07946392.1| SNF2 family domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325831768|ref|ZP_08164957.1| SNF2 family N-terminal domain protein [Eggerthella sp. HGA1]
 gi|257475627|gb|ACV55947.1| Non-specific serine/threonine protein kinase [Eggerthella lenta DSM
            2243]
 gi|316913074|gb|EFV34590.1| SNF2 family domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486437|gb|EGC88887.1| SNF2 family N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1089

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 25/189 (13%)

Query: 23   FNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN 78
                ++  K  QL      +Y +   H       K+ A+  I+E A       +V   F 
Sbjct: 893  VEVLAELTKLRQLCCDPRLLYENYAGHA-----AKLDAIAEIVESAMDAGEKTLVFSQFT 947

Query: 79   SDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S L+ + +                   +    +  +N+   P+      + G GLNL  G
Sbjct: 948  SFLSLIAEVLDAHGVPYFTITGTTPKKRRLDLVNAFNDDDTPVFLVSLKAGGTGLNLT-G 1006

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +++V    WW+     Q  +R       + G  + V V+ +IA++T++E +L     K+
Sbjct: 1007 ASVVVHADPWWNAAAQNQATDR-----AHRIGQTQVVSVHKVIAKDTVEERILHLQDAKT 1061

Query: 189  TIQDLLLNA 197
             + D ++ A
Sbjct: 1062 DLADQVIGA 1070


>gi|182434140|ref|YP_001821859.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462656|dbj|BAG17176.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1006

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++   +                Q+ N  A Y  EE         K++ L
Sbjct: 779 LYEAVVRETLAEISAADGFERRGLVMKLLTALKQICNHPAQYLKEEDPRIADRSGKVELL 838

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   A    ++V   +      L++              G  + +    +  +  G
Sbjct: 839 DELLDTILAEQGSVLVFTQYVQMARLLEEHLAARGVATQFLHGGTPVARREEMVNRFQSG 898

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL   G+ +V F  WW+     Q  +R       + G  + V V
Sbjct: 899 EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEAQATDR-----AYRIGQTQPVQV 952

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ TI++ + + L  K  + D +L + + 
Sbjct: 953 HRLIAEGTIEDRIAEMLTRKQGLADAVLGSGEA 985


>gi|160935631|ref|ZP_02083006.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
 gi|158441375|gb|EDP19085.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
          Length = 1075

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 23/183 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             ++ ++  Q+     + YD  +        K++    ++ +  A    I++   F S L 
Sbjct: 881  LAELMRLRQICCDPRLCYDNYR----GSSAKLETCMDLVRRGVAGGHKILLFSQFTSMLD 936

Query: 83   RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             +   F +            + ++    + ++ + ++P+      + G GLNL    +I+
Sbjct: 937  IIHTRFEKEGIMSHMLTGATSKEERIRLVGDFGKDEVPVFLISLKAGGTGLNLT-AADIV 995

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + +  WW++    Q  +R       + G  + V VY LI +NTI+E +L+    KS + D
Sbjct: 996  IHYDPWWNVAAQNQATDR-----THRIGQDKQVTVYKLITRNTIEENILKLQEAKSHLAD 1050

Query: 193  LLL 195
             ++
Sbjct: 1051 AVV 1053


>gi|295699426|ref|YP_003607319.1| SNF2-related protein [Burkholderia sp. CCGE1002]
 gi|295438639|gb|ADG17808.1| SNF2-related protein [Burkholderia sp. CCGE1002]
          Length = 1172

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 31   KCLQLANGAV-YYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            + ++ A+G           + +   K+      L  +IE+     +++   F   LA + 
Sbjct: 974  RLVRTASGFTDGAATGGGERAMRSAKLDLLLSMLPELIEE--GRRVLLFSQFTGMLALIA 1031

Query: 86   KAFPQGRT----LDKDPCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +A  +       L  D       ++ + +G++PL      + G GLNL    + ++ +  
Sbjct: 1032 QALDEAAIPYAMLTGDTTDRVTPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDP 1090

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            WW+     Q  +R       + G  + VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1091 WWNPAAENQATDR-----AHRLGQDKPVFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1143


>gi|170693768|ref|ZP_02884925.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
 gi|170141186|gb|EDT09357.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
          Length = 1162

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            R++ CD +       A N    +         A    E+       D  +  L  +I++ 
Sbjct: 945  RQVCCDPRLVRTLRTAQNVGEVSEGSSTQTARASDKTEKGVRSAKLDLLLSMLPELIDE- 1003

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCT----IQEWNEGKIPLLFAHPAS 118
                +++   F   L+ + +A  +       L  D       +Q + +G++PL      +
Sbjct: 1004 -GRRVLLFSQFTGMLSLIAQALDEAAIPYVILTGDTTDRVTPVQRFQQGEVPLFLISLKA 1062

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL    + ++ +  WW+     Q  +R       + G  + VFVY LIA  +I+E
Sbjct: 1063 GGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLGQDKPVFVYKLIAAGSIEE 1116

Query: 179  LVLQRLRTKSTIQDLLLN 196
             +++    K+ + D +L+
Sbjct: 1117 KIVELQEQKAGLADSILS 1134


>gi|196233486|ref|ZP_03132329.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
 gi|196222482|gb|EDY17009.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
          Length = 815

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL-- 81
            +  ++  Q         ++    E    KI+ L  ++ +A      +++   F S L  
Sbjct: 622 LTALLRLRQACCDLRLLGQDDIESEQASAKIELLRELLAEAVDGGHRVLIFSQFVSMLTL 681

Query: 82  -------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                    +   +  G T D+    +  +  G+ P       + G GLNL    + ++ 
Sbjct: 682 LREALTEDEIPYCYLDGSTKDRAAE-VDRFQAGETPAFLISLKAGGVGLNLT-AADTVIH 739

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F  WW+     Q  +R       + G ++ V  Y LIA++T++E +L   + K  + D  
Sbjct: 740 FDPWWNPAVEAQATDR-----AHRIGQQKVVTAYKLIARDTVEEKILALQQKKRALVDAT 794

Query: 195 LNA 197
           + +
Sbjct: 795 IES 797


>gi|46190976|ref|ZP_00120784.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
            [Bifidobacterium longum DJO10A]
          Length = 1062

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  K  Q+      +Y D +         
Sbjct: 825  KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ-----SA 879

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 880  KLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVD 939

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 940  QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQATDR-----AHRIGQT 993

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 994  EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1028


>gi|255524582|ref|ZP_05391536.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296185768|ref|ZP_06854175.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255511735|gb|EET88021.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296049596|gb|EFG89023.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 929

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 23/206 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + + E+  +++ + I        S   +  Q+      + E     E  + K++AL+ I
Sbjct: 711 QQAKEEVNNEIRDKGINKSKIKILSIITRLRQICCDPSTFIEN---YEGDNGKMEALKDI 767

Query: 63  IEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDP-CTIQEWNEGKIP 110
           ++    +   I++   F S L           ++  +  G    +D    ++E+NEG+IP
Sbjct: 768 VQNNVNDGHKILLFSQFTSVLKNIGEMFKSENIKYMYLDGSVKAEDRGEIVREFNEGEIP 827

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL    +I++ +  WW+     Q  +R       + G K+ V V  L
Sbjct: 828 IFLISLKAGGTGLNLT-SADIVIHYDPWWNPAVENQASDR-----AHRIGQKKTVEVIRL 881

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           IA+ TI+E + +    K  I + ++ 
Sbjct: 882 IAKGTIEEKIHKIQEKKKEIINDVIE 907


>gi|298528668|ref|ZP_07016072.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512320|gb|EFI36222.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1387

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
              Y   + +   +L+  + +         ++  +  Q          E         K+ 
Sbjct: 1164 AMYEAMRMQALENLEQVSEQGGARNLRILTELTRLRQFCCHPRMVVPESRV---PGSKLD 1220

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDL----ARLQKAFPQGRTLDK------DPCTIQEWN 105
             L+ II +  AN    +V   F   L     RL+    + R LD           IQ + 
Sbjct: 1221 LLQEIITELLANKHKALVFSQFVKHLALVRERLEAMGIEYRYLDGSTPGHVREQEIQAFQ 1280

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  L      + G GLNL    + ++    WW+     Q  +R       + G +  V
Sbjct: 1281 EGRGDLFLISLKAGGLGLNLT-AADYVIHLDPWWNPAVEDQATDR-----SHRIGQENPV 1334

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+A+NTI+E +++    K  + D LL  
Sbjct: 1335 TVYRLVAENTIEEKIVRLHAEKRDLADSLLEG 1366


>gi|289450552|ref|YP_003475678.1| SNF2 family N-terminal domain-containing protein [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185099|gb|ADC91524.1| SNF2 family N-terminal domain protein [Clostridiales genomosp. BVAB3
            str. UPII9-5]
          Length = 1107

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             S   +  Q+A     + E  H       K++ LE I+  A      I++   F + LA 
Sbjct: 914  LSLLTRLRQIACHPALFLENYH---GSSGKLELLEEILTTALAGGHRILIFSQFTALLAI 970

Query: 84   LQ---------KAFPQGRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++           +  G    K+    + ++N G+  +      + G GLNL  G + ++
Sbjct: 971  IKPLLERLAITYMYIDGGVSPKERTDLVNKFNAGEGEVFLISLKAGGTGLNLT-GADTVI 1029

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                WW+    QQ  +R       + G +R V VY LIA+ TI+E +      K  + D 
Sbjct: 1030 LMDPWWNPAVEQQATDR-----SHRLGQQRRVQVYRLIAKGTIEEKIRNLQERKQNLIDQ 1084

Query: 194  LL 195
            ++
Sbjct: 1085 VV 1086


>gi|317131242|ref|YP_004090556.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315469221|gb|ADU25825.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 1081

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 23/184 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             +   +  QL     +YY++          K++    ++     +   +++   F S L+
Sbjct: 881  LAMLTRLRQLCCDPSLYYED----YTGGSAKLELCMELLRSVTESGHKVLLFSQFTSMLS 936

Query: 83   RLQKAF---------PQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             +              +G T  ++       +N    P+      + G GLNL    +I+
Sbjct: 937  IIADRLTGDGIGYYVLKGSTSKEERARLTTRFNNDDTPVFLISLKAGGTGLNLT-AADIV 995

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + +  WW++    Q  +R       + G K +V VY LIA++TI+E +L+  + K  + D
Sbjct: 996  IHYDPWWNVSAQNQATDR-----AHRIGQKSSVQVYKLIAKDTIEEKILKLQQDKLKLAD 1050

Query: 193  LLLN 196
             +++
Sbjct: 1051 SVIS 1054


>gi|323530052|ref|YP_004232204.1| SNF2-like protein [Burkholderia sp. CCGE1001]
 gi|323387054|gb|ADX59144.1| SNF2-related protein [Burkholderia sp. CCGE1001]
          Length = 1175

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 44   EEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLD 95
             E+  +     K+      L  +IE+     +++   F   LA + +A  +       L 
Sbjct: 991  AERGARTTRSAKLDLLLSMLPELIEE--GRRVLLFSQFTGMLALIAEALDEAAIPYVILT 1048

Query: 96   KDPCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D       ++ +  GK+PL      + G GLNL    + ++ +  WW+     Q  +R 
Sbjct: 1049 GDTADRITPVERFQHGKVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR- 1106

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1107 ----AHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1147


>gi|288958707|ref|YP_003449048.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
 gi|288911015|dbj|BAI72504.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
          Length = 1160

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 24/184 (13%)

Query: 29   TVKCLQLANGA----VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
             +K  Q+                 +     K+ AL  ++++       I++   F + L 
Sbjct: 964  LLKLRQVCCDPRLLKSIAALGGKAR--PSAKLHALTGMVKEMVPEGRRILIFSQFTTMLD 1021

Query: 83   RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             ++    +         GRTLD+    +  +   ++P+      + G GLNL    + ++
Sbjct: 1022 LIKLELEKAAIPYVELTGRTLDR-ALPVNRFQNREVPVFLISLKAGGRGLNLT-AADTVI 1079

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             +  WW+     Q  +R       + G  + VFVY LIA NT++E +L   R K ++   
Sbjct: 1080 HYDPWWNPAAEDQATDR-----AYRIGQDKPVFVYKLIAANTVEERILDLQRRKGSLSAA 1134

Query: 194  LLNA 197
             +  
Sbjct: 1135 TIEG 1138


>gi|170720849|ref|YP_001748537.1| non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
 gi|169758852|gb|ACA72168.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
          Length = 1108

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 17/183 (9%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
             +K  Q+     +    E    +    K+ AL  ++E+  +    +++   F S LA ++
Sbjct: 909  LLKLRQVCCDLRLVKGVEIKGNQADKGKLGALLDMLEELLSEGRRVLLFSQFTSMLALIE 968

Query: 86   KAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +   + +                +Q++ +G   +      + G GLNL    + ++ F  
Sbjct: 969  QELEKRKIRYSLLTGDTRDRRTPVQQFQQGDSEVFLISLKAGGVGLNLT-AADTVIHFDP 1027

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G  + VFV+ LI + T++E + Q  + K+ +   LL+ 
Sbjct: 1028 WWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEKIQQLQQEKAALAASLLDG 1082

Query: 198  LKK 200
             + 
Sbjct: 1083 AEA 1085


>gi|91778444|ref|YP_553652.1| putative helicase [Burkholderia xenovorans LB400]
 gi|91691104|gb|ABE34302.1| Putative helicase [Burkholderia xenovorans LB400]
          Length = 1150

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 20/164 (12%)

Query: 45   EKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDK 96
            EK  + +   K+      L  +IE+     +++   F   L+ + +A  +       L  
Sbjct: 967  EKGARAMRSAKLDLLLSMLPELIEE--GRRVLLFSQFTGMLSLIAEALEEAAIPYVILTG 1024

Query: 97   DPCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D       ++ + +G++PL      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 1025 DTADRVTPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-- 1081

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1082 ---AHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1122


>gi|227545238|ref|ZP_03975287.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300909872|ref|ZP_07127333.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
 gi|227184771|gb|EEI64842.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300893737|gb|EFK87096.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
          Length = 1161

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + L   +Q +N E          ++  +  +L       D           KIK
Sbjct: 940  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDSG---YSGPSGKIK 996

Query: 58   ALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
            A   +I  E A+   I++   F S LA L++   +         G+T   D    + E+N
Sbjct: 997  ATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVDEFN 1056

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +      + G GLNL    ++++ F  WW++    Q  +R       + G K  
Sbjct: 1057 SYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQKNN 1110

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1111 VTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1143


>gi|296159842|ref|ZP_06842663.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295889825|gb|EFG69622.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1150

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 20/164 (12%)

Query: 45   EKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDK 96
            EK  + +   K+      L  +IE+     +++   F   L+ + +A  +       L  
Sbjct: 967  EKGARAMRSAKLDLLLSMLPELIEE--GRRVLLFSQFTGMLSLIAEALEEAAIPYVILTG 1024

Query: 97   DPCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D       ++ + +G++PL      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 1025 DTADRVTPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-- 1081

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1082 ---AHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1122


>gi|330819988|ref|YP_004348850.1| SNF2-related protein [Burkholderia gladioli BSR3]
 gi|327371983|gb|AEA63338.1| SNF2-related protein [Burkholderia gladioli BSR3]
          Length = 1119

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKI----KALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q+         E+  +     K+    + L  +IE+     +++   F   L  +
Sbjct: 907  LLKLRQVCCDPRLVKLERAARVEESAKLALLMEMLPELIEE--GRRVLLFSQFTGMLELI 964

Query: 85   QKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             +A            G T D+    +Q + +G++PL      + G GLNL    + ++ +
Sbjct: 965  AEALDAAGIAHVMLTGDTTDRV-TPVQRFQQGEVPLFLISLKAGGVGLNLT-AADTVIHY 1022

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              WW+     Q  +R       + G  + VFVY LI   +++E +L     K+ +   +L
Sbjct: 1023 DPWWNPSVENQATDR-----AHRLGQDKPVFVYKLIVAGSVEEKILVLQEQKAALASAIL 1077

Query: 196  N 196
            +
Sbjct: 1078 S 1078


>gi|239940441|ref|ZP_04692378.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291443871|ref|ZP_06583261.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291346818|gb|EFE73722.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1006

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++G    A             Q+ N  A Y  EE         K+  L
Sbjct: 780 LYEAAVRETMAQIEGAEGIARRGLIMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 839

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNE 106
           + +++   +    +++   + S  ARL  A    R +            +    +  +  
Sbjct: 840 DELLDTILSEDGSVLIFTQYVSM-ARLLSAHLASRAIPSQLLHGGTPVPERERMVDRFQS 898

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P+      + G GLNL    + +V F  WW+    +Q  +R       + G  + V 
Sbjct: 899 AEVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPAVEEQATDR-----AYRIGQTQPVQ 952

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +I + T+++ + + L +K  + D +L
Sbjct: 953 VHRIITEGTVEDRIAELLESKRALADAVL 981


>gi|255282163|ref|ZP_05346718.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
 gi|255267111|gb|EET60316.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
          Length = 454

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 88/210 (41%), Gaps = 21/210 (10%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y++ +R+ + +L+ G  I A    +K ++  Q   G +  DE    + V   KI ALE
Sbjct: 245 QLYNQIKRDSFAELEDGGQITAPTVLTKLLRLQQFTGGFIQADEGIKPEFVFKGKINALE 304

Query: 61  VIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNE 106
            I++    +    +++   F  ++  +  +  + +             D+ P        
Sbjct: 305 DILDDYVISAGKKLVIFCRFRPEIDLISDSLKKKKIRFASIYGDIKIEDRGPIVEDFQKN 364

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +  A   + G G+ L    +  V++S  ++   + Q + RI      + G K    
Sbjct: 365 PETKVFLAQIDTAGLGITLT-AADTCVYYSENFNYAAYSQSLARI-----HRIGQKNRCT 418

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +L+ +++IDE +L+ L  K  +   +++
Sbjct: 419 YIHLVVEHSIDETILKALARKEDLAKTVVD 448


>gi|209521910|ref|ZP_03270580.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
 gi|209497652|gb|EDZ97837.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
          Length = 1162

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCT----IQEW 104
            D  +  L  +IE+     +++   F   LA + KA  +       L  D       ++ +
Sbjct: 991  DLLLSMLPELIEE--GRRVLLFSQFTGMLALIAKALDEAAIPYAMLTGDTTDRVTPVERF 1048

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +G++PL      + G GLNL    + ++ +  WW+     Q  +R       + G  + 
Sbjct: 1049 QQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR-----AHRLGQDKP 1102

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1103 VFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1133


>gi|266625310|ref|ZP_06118245.1| helicase, SNF2/RAD54 family [Clostridium hathewayi DSM 13479]
 gi|288862792|gb|EFC95090.1| helicase, SNF2/RAD54 family [Clostridium hathewayi DSM 13479]
          Length = 889

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 79/204 (38%), Gaps = 26/204 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVII 63
           + +++L     G + +     ++  +  Q+       Y +           K++    +I
Sbjct: 678 QVKQQLELAGDGGS-DRIQILAQLTRLRQICCDPHLCYSNYNG-----SSAKLETCIDLI 731

Query: 64  EKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
                    I++   F S L  ++K   +              ++    +  + +  +P+
Sbjct: 732 RNGVEGGHKILLFSQFTSMLEIIEKRLKKEGMAYYILTGATPKEERLHMVSSFKDDGVPV 791

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    ++++ +  WW++    Q  +R       + G ++ V V+ LI
Sbjct: 792 FLISLKAGGTGLNLT-AADVVIHYDPWWNVAAQNQATDR-----THRIGQEKQVTVFKLI 845

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
            + TI+E +L+   +K  + + ++
Sbjct: 846 TKGTIEENILKLQESKKNLAEQII 869


>gi|91793580|ref|YP_563231.1| SNF2-related [Shewanella denitrificans OS217]
 gi|91715582|gb|ABE55508.1| SNF2-related [Shewanella denitrificans OS217]
          Length = 1088

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 23/205 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KALE 60
             K  REL+   +G +          +K  Q          E+      + K+    + L 
Sbjct: 875  EKKLRELFAQ-KGVSSSHIEFLDALLKLRQACCDPRLVKLEQAQNVKSNAKLTWLTENLT 933

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPL 111
             ++E+     I++   F   L+ +++         +   G+T  +    I ++ EG+ P+
Sbjct: 934  EMVEE--GRKILIFSQFTGMLSLIEEELQRLNIDYSLLTGKTRSRQTQ-IDDFQEGRKPV 990

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    + ++ F  WW+        ER    R  + G    VFVY LI
Sbjct: 991  FLISLKAGGTGLNLTT-ADTVIHFDPWWN-----PAAERQATDRAHRIGQLNPVFVYKLI 1044

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T++E + +  + K  + D +L+
Sbjct: 1045 AQGTVEEKIHEMQQHKQGLADSILS 1069


>gi|288962950|ref|YP_003453244.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
 gi|288915216|dbj|BAI76700.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
          Length = 1172

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 22/188 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF 77
                  +K  Q+         E    +  K     K+  L  ++ +  A+   I++   F
Sbjct: 969  TILDALLKLRQVCCDPRLVKLESARKRVAKGAASAKLDRLLEMLPELLADGRRILLFSQF 1028

Query: 78   NSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
             S    ++    +         G T D+    +  +  G++PL      + G GLNL   
Sbjct: 1029 TSMFDLMRPELERLAIPFVELTGDTRDR-ETPVNRFQAGEVPLFLISLKAGGTGLNLT-A 1086

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++ +  WW+     Q  +R       + G  + VFVY L+   T++E ++Q    K 
Sbjct: 1087 ADTVIHYDPWWNPAVEDQATDR-----AHRIGQDKPVFVYKLVTTGTVEERMVQLQERKR 1141

Query: 189  TIQDLLLN 196
             + + + +
Sbjct: 1142 RLGEAVYD 1149


>gi|296122550|ref|YP_003630328.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296014890|gb|ADG68129.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 1112

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQ---RELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y + +   R+    L   QG      +     ++  Q +         K   E    K
Sbjct: 890  RLYDELRDHFRDSLLGLIESQGLAKTKMHVLEALLRLRQASCHPALL--HKSSDEEGSAK 947

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW 104
            +  L   +E+        +V   F S LA ++K             G+T D+  C  +  
Sbjct: 948  LDVLIPHLEELVGEGHKTLVFSQFTSMLAIVRKHLDRAGITYEYLDGQTRDRKECVERFQ 1007

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+    +      + G GLNL    + +     WW+     Q I+R       + G  R 
Sbjct: 1008 NDKDCGVFLISLKAGGLGLNLT-AADYVFILDPWWNPAVETQAIDR-----AHRVGQTRQ 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF Y LI +NT++E + +  + K  + D +L 
Sbjct: 1062 VFAYRLICKNTVEEKIAELQKQKRELADAILE 1093


>gi|320006862|gb|ADW01712.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 992

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A Y  EE+        K++ L
Sbjct: 765 LYEAVVRETLDEISGADGFARRGLIVKLMTALKQICNHPAQYLKEEQPRIADRSGKVELL 824

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G  + +    +  +  G
Sbjct: 825 DELLDTILSEGAGVLVFTQYVQMARLLERHLAARGVPTQFLHGGTPIAEREAMVDRFQAG 884

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V    WW+     Q  +R       + G  R V V
Sbjct: 885 RVPVFLLSLKAAGTGLNLTRAEH-VVHVDRWWNPAVEAQATDR-----AYRIGQTRPVQV 938

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LI + TI++ +   L  K  + D +L   + 
Sbjct: 939 HRLITEGTIEDRIAAMLARKQGLADAVLGGGEA 971


>gi|152986052|ref|YP_001350061.1| helicase [Pseudomonas aeruginosa PA7]
 gi|150961210|gb|ABR83235.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 773

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 29  TVKCLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +K  Q+           D  +  +     K+  L  ++++  A    +++   F S LA
Sbjct: 573 LLKLRQVCCDTRLLQRQEDSARGGRAASSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLA 632

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++ A  Q         G T D+    +Q +  G++P+      + G GLNL    + ++
Sbjct: 633 LVEDALRQRGVDYVLLTGETRDRR-APVQRFQGGQVPVFLISLKAGGVGLNLT-AADTVI 690

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LIA+ T++E +    + K+ + D 
Sbjct: 691 HYDPWWNPAVENQASDR-----AYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADG 745

Query: 194 LLN 196
           L +
Sbjct: 746 LFS 748


>gi|295424920|ref|ZP_06817632.1| possible non-specific serine/threonine protein kinase [Lactobacillus
            amylolyticus DSM 11664]
 gi|295065359|gb|EFG56255.1| possible non-specific serine/threonine protein kinase [Lactobacillus
            amylolyticus DSM 11664]
          Length = 1090

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 85/215 (39%), Gaps = 31/215 (14%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEK 55
             Y    ++L   L  ++ +      F   +   K  +L      +Y D           K
Sbjct: 868  LYQAQTQKLIAQLNKQDDKDFKKQRFQVLAAITKLRELCCDPHLLYEDYRGK-----SAK 922

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
            + A   +IE   A+   I++   F S L  +++   Q +             K    I++
Sbjct: 923  LAATMELIEDSIADGHKILLFSQFTSMLELIEQKLKQAKIVTFVITGSTPKQKRQELIKQ 982

Query: 104  WNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N+   P +      + G G+NL    ++++ +  WW++    Q  +R       + G K
Sbjct: 983  FNKLDHPAIFLISLKAGGTGINLT-SADVVIHYDPWWNVAAENQATDR-----AHRIGQK 1036

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V +Y ++A+ TI+E +++    K  + D +L+ 
Sbjct: 1037 HNVQIYKMVAKGTIEEKIVELQERKEKLADEVLSG 1071


>gi|256003807|ref|ZP_05428794.1| SNF2-related protein [Clostridium thermocellum DSM 2360]
 gi|255992145|gb|EEU02240.1| SNF2-related protein [Clostridium thermocellum DSM 2360]
 gi|316939145|gb|ADU73179.1| SNF2 helicase associated domain protein [Clostridium thermocellum DSM
            1313]
          Length = 1087

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E+  +LQ    E       S   +  Q+      + E          K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIEN---YSGESGK 920

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQE 103
            I+ALE I+  A  +   I++   F S L  +++   Q         G T  +D    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+     Q  +R       + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPAVEDQASDR-----AHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|307727814|ref|YP_003911027.1| SNF2-related protein [Burkholderia sp. CCGE1003]
 gi|307588339|gb|ADN61736.1| SNF2-related protein [Burkholderia sp. CCGE1003]
          Length = 1227

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 20/165 (12%)

Query: 44   EEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLD 95
             EK  +     K+      L  +IE+     +++   F   L+ + +A  +       L 
Sbjct: 1043 PEKGARPTRSAKLDLLLSMLPELIEE--GRRVLLFSQFTGMLSLIAQALDEAAIAYVILT 1100

Query: 96   KDPCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D       +Q + +G++PL      + G GLNL    + ++ +  WW+     Q  +R 
Sbjct: 1101 GDTADRITPVQRFQQGEVPLFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAENQATDR- 1158

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + VFVY LIA  +I+E +++    K+ + D +L+
Sbjct: 1159 ----AHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILS 1199


>gi|270208570|ref|YP_003329341.1| putative helicase [Sinorhizobium meliloti]
 gi|76880844|gb|ABA56014.1| putative helicase [Sinorhizobium meliloti]
          Length = 1126

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 22/183 (12%)

Query: 29   TVKCLQLANGA---VYYDEEK-HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
             +K  Q           D +K    +    K+  L  ++ +       +IV   F S L 
Sbjct: 932  LLKLRQACCDPRLLKLTDTKKPSSVQAESAKLDRLMELVGELADEGRKVIVFSQFTSMLD 991

Query: 83   RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             +++             G T+D+    ++ +  G +P+      + G GLNL    + ++
Sbjct: 992  LIRRRLDDADIAYALLTGDTVDRGTQ-VESFQHGTMPVFLISLKAGGVGLNLT-AADTVI 1049

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             +  WW+    +Q I+R       + G  + VFVY L+A +TI+E +      K  +   
Sbjct: 1050 LYDPWWNPAVEEQAIDR-----AHRIGQDKPVFVYRLVAADTIEEKMDVLKDKKRALAAS 1104

Query: 194  LLN 196
            L +
Sbjct: 1105 LFD 1107


>gi|257094640|ref|YP_003168281.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047164|gb|ACV36352.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1003

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
            +K  Q+             K     K+  L  ++ +       I++   F S LA ++K
Sbjct: 809 LLKLRQVCCDPRLVKARSAQKVKERAKLDLLMTMLPEQVEEGRRILLFSQFTSMLALIEK 868

Query: 87  AFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        G T D++   ++ +   ++P+      + G GLNL    + ++ +  
Sbjct: 869 ELKLAGIDYVILTGDTRDREAQ-VRRFQACEVPVFLISLKTGGVGLNLT-AADTVIHYDP 926

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           WW+     Q  +R       + G  + VFVY LI   +I+E +L     K+ +   +L+
Sbjct: 927 WWNPAAENQATDR-----AHRLGQDKPVFVYKLIVAGSIEEKILALQERKAELAAHILS 980


>gi|125974936|ref|YP_001038846.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125715161|gb|ABN53653.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 1087

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E+  +LQ    E       S   +  Q+      + E          K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIEN---YSGESGK 920

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQE 103
            I+ALE I+  A  +   I++   F S L  +++   Q         G T  +D    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+     Q  +R       + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPAVEDQASDR-----AHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|281418599|ref|ZP_06249618.1| SNF2-related protein [Clostridium thermocellum JW20]
 gi|281407683|gb|EFB37942.1| SNF2-related protein [Clostridium thermocellum JW20]
          Length = 1087

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E+  +LQ    E       S   +  Q+      + E          K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIEN---YSGESGK 920

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQE 103
            I+ALE I+  A  +   I++   F S L  +++   Q         G T  +D    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+     Q  +R       + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPAVEDQASDR-----AHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|239986923|ref|ZP_04707587.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 914

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++G    A             Q+ N  A Y  EE         K+  L
Sbjct: 688 LYEAAVRETMAQIEGAEGIARRGLIMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 747

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNE 106
           + +++   +    +++   + S  ARL  A    R +            +    +  +  
Sbjct: 748 DELLDTILSEDGSVLIFTQYVSM-ARLLSAHLASRAIPSQLLHGGTPVPERERMVDRFQS 806

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P+      + G GLNL    + +V F  WW+    +Q  +R       + G  + V 
Sbjct: 807 AEVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPAVEEQATDR-----AYRIGQTQPVQ 860

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +I + T+++ + + L +K  + D +L
Sbjct: 861 VHRIITEGTVEDRIAELLESKRALADAVL 889


>gi|312128395|ref|YP_003993269.1| SNF2-like protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778414|gb|ADQ07900.1| SNF2-related protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 1139

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 87/214 (40%), Gaps = 27/214 (12%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++     E       S   +  Q+        E+    +    K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFED---YKGSSGK 973

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ ++K   + + L          +     +  
Sbjct: 974  LEALKEILQDCLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNS 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+     Q   R       + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPAVENQATAR-----AHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +I +N+I+E +L   + K  + D L+ A
Sbjct: 1088 VVQSFKIITKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|168703233|ref|ZP_02735510.1| SNF2-related protein [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 29/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y + +      L                 +  ++  Q A      D  K        K
Sbjct: 876  QVYDELRDHYRASLLAHVDSVGLKRSQIQVLAALMRLRQAACHPGLID--KKRTGDASAK 933

Query: 56   IK----ALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQ 102
            +      L+ + E       +V   F S L  ++K          +  GRT D+D    +
Sbjct: 934  LDYLLPQLQELAES--GQKALVFSQFTSLLDIVRKRLTAEGIQFEYLDGRTRDRDKRVER 991

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
               +    L      + G GLNL      +     WW+     Q I+R       + G  
Sbjct: 992  FQTDPACKLFLVSLKAGGVGLNLT-AAEYVFLLDPWWNPAAEAQAIDR-----SYRIGQT 1045

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + VF Y LIA+ T++E VL+  ++K  + D +L  
Sbjct: 1046 KPVFAYRLIARGTVEEKVLELQQSKRELADAILGG 1080


>gi|38637850|ref|NP_942824.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527188|gb|AAP85938.1| putative helicase, superfamily II [Ralstonia eutropha H16]
          Length = 1106

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q+         ++  +     K+      L  +IE+     I++   F S L  +
Sbjct: 894  LLKLRQVCCDPRLVKIKEAARIKESAKLDLLLHMLPELIEE--GRRILLFSQFTSMLDLI 951

Query: 85   QKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              A            G T D+    ++ + +G++PL      + G GLNL    + ++ +
Sbjct: 952  AAALRNAGIPYVMLTGDTTDR-ITPVERFQQGEVPLFLISLKAGGVGLNLT-AADTVIHY 1009

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              WW+     Q  +R       + G  + VFVY LI   +++E ++     K+ + + +L
Sbjct: 1010 DPWWNPAVENQATDR-----AHRLGQDKPVFVYKLITGGSVEEKIVAMQAQKAALAEAIL 1064

Query: 196  N 196
            +
Sbjct: 1065 S 1065


>gi|188532517|ref|YP_001906314.1| Putative helicase [Erwinia tasmaniensis Et1/99]
 gi|188027559|emb|CAO95406.1| Putative helicase [Erwinia tasmaniensis Et1/99]
          Length = 890

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 703 RQICCDPRLLSDPRAEKVRHSAKLALLREMLRDLLAEDRRILIFSQFTTMLTIIAGELQK 762

Query: 91  ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    G T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 763 AHIPFVTLTGSTRDRNE-PVRRFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 820

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA +TI+E ++   + K+ + + +L+
Sbjct: 821 AAENQATDR-----AYRLGQDKPVFVYKLIAADTIEEKIVALQQQKADLAEEILS 870


>gi|296163436|ref|ZP_06846189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295886324|gb|EFG66189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1117

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKI----KALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q+          +  +     K+    + L  +IE+     I++   F   L  +
Sbjct: 905  LLKLRQVCCDPRLVKISQAARIKESAKLALLLEMLPELIEE--GRRILLFSQFTGMLELI 962

Query: 85   QKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
              A  +                  I+ + +  +PL      + G GLNL    + ++ + 
Sbjct: 963  AAALNEAGIPYVVLTGDTTDRRTPIRRFQQRAVPLFLISLKAGGVGLNLT-AADTVIHYD 1021

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+     Q  +R       + G  + VFVY LI   +++E ++     K+ + D +L+
Sbjct: 1022 PWWNPAVENQATDR-----AHRLGQDKPVFVYKLITAGSVEEKIVAMQEQKAALADAILS 1076


>gi|194466323|ref|ZP_03072310.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
 gi|194453359|gb|EDX42256.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
          Length = 1162

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + L   +Q +N E          ++  +  +L       D           KIK
Sbjct: 941  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRG---YSGPSGKIK 997

Query: 58   ALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
            A   +I  E A+   I++   F S LA L++   +         G+T   D    + E+N
Sbjct: 998  ATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVDEFN 1057

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +      + G GLNL    ++++ F  WW++    Q  +R       + G K  
Sbjct: 1058 SYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQKNN 1111

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1112 VTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1144


>gi|294628099|ref|ZP_06706659.1| SNF2/helicase domain-containing protein [Streptomyces sp. e14]
 gi|292831432|gb|EFF89781.1| SNF2/helicase domain-containing protein [Streptomyces sp. e14]
          Length = 906

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G    A             Q+ N  A +  E++        K++ L
Sbjct: 679 LYEALVRETLAEISGAGGMARRGLVVKLLTGLKQICNHPAQFLKEDRPRIAGRSGKLELL 738

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + ++    A  A ++V   +      +++              G  +      ++ + +G
Sbjct: 739 DELLGTILAEGAGVLVFTQYVRMARLIERHLAARGVPSQFLHGGTPVAGREDMVRRFQDG 798

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 799 EAPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQSRPVQV 852

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + LIA+ T+++ +   LR K  + + +L
Sbjct: 853 HRLIAEGTVEDRIAGLLRRKQDLAETVL 880


>gi|302879469|ref|YP_003848033.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
 gi|302582258|gb|ADL56269.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
          Length = 1100

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 16/178 (8%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +K  Q+             K     K+  L  ++ +  +    I+V   F S L  ++ 
Sbjct: 902  LLKLRQVCCDPRLLKLTSAKKVKEHAKLDLLMEMLPELVSEGRRILVFSQFTSMLELIEG 961

Query: 87   AFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               + +                ++++ +G++P+      + G GLNL    + ++ +  W
Sbjct: 962  ELTKEKLTYVKLTGDTQNREEVVRQFQDGEVPIFLISLKAGGVGLNLT-SADTVIHYDPW 1020

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q  +R       + G  + VFVY L+   +I+E +L     K+ +   +L+
Sbjct: 1021 WNPAVENQATDR-----AHRLGQTKNVFVYKLVVAGSIEEKILALQEKKAELAAGILS 1073


>gi|302386693|ref|YP_003822515.1| SNF2-related protein [Clostridium saccharolyticum WM1]
 gi|302197321|gb|ADL04892.1| SNF2-related protein [Clostridium saccharolyticum WM1]
          Length = 1047

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 73/184 (39%), Gaps = 25/184 (13%)

Query: 26   ASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
             +   +  Q+       Y + +         K++    +I         I++   F S L
Sbjct: 854  LAALTRLRQICCDPHLCYNNYKGE-----SAKLETCMDLIRNGVEGGHKILLFSQFTSML 908

Query: 82   ARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +++   +              ++    +  + + +IPL      + G GLNL    ++
Sbjct: 909  EIMEQRLKKEAVPYYMLTGATPKEERLHMVNSFKDDEIPLFLISLKAGGTGLNLT-AADV 967

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ F  WW++    Q  +R       + G ++ V V+ LI +NTI+E +L+   +K  + 
Sbjct: 968  VIHFDPWWNVAAQNQATDR-----AHRIGQEKQVSVFKLITKNTIEENILKLQESKKDLA 1022

Query: 192  DLLL 195
            + ++
Sbjct: 1023 EQII 1026


>gi|257069450|ref|YP_003155705.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
 gi|256560268|gb|ACU86115.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
          Length = 1110

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + +R+    L   +++               +A      D E  + +V   K++AL   +
Sbjct: 896  QRERKKVLGLIDTDLDRSRFIVFRSLTLLRMMALDPSLVDPEA-YADVPSSKLEALFDRL 954

Query: 64   EK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            E+   +   +++   F S L           ++ A   G T D+D   +  + EG  P+ 
Sbjct: 955  EEVIGDGHRVLLFSQFTSYLDQVASELERREVRYAHLDGSTRDRD-AAVAGFREGDAPVF 1013

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GL L    + +     WW+     Q ++R       + G  R V VY +IA
Sbjct: 1014 LISLKAGGFGLTLTE-ADYVFLLDPWWNPAAENQAVDR-----AHRIGQDRTVMVYRMIA 1067

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++TI+E VL   R K+ + D L +  + 
Sbjct: 1068 EDTIEEKVLALQRRKAELFDALTDGGEA 1095


>gi|328957397|ref|YP_004374783.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
 gi|328673721|gb|AEB29767.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
          Length = 1075

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 23/207 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  +E    + G   +       +   +  Q+      + ++    E    K++ L+
Sbjct: 852  AYLQRIQESVNSMNGAEFKKNRIEILAGLTRLRQICCDPKLFIDD---YEGSSGKLEQLK 908

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
              I+ A  N   I++   F S LA ++K   +         G+T  K+    + ++N G+
Sbjct: 909  ETIQTARENGRRILIFSQFTSMLAIIEKELDEQEVETFYLSGQTKPKERIEMVNKFNAGE 968

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+    +Q   R       + G K+ V V 
Sbjct: 969  KDVFLISLKAGGTGLNLT-GADMVILYDLWWNPAVEEQAAGR-----AHRIGQKKVVQVL 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LIA+ TI+E + Q  + K  + D ++
Sbjct: 1023 RLIAEGTIEEKIDQLQQEKKALFDQII 1049


>gi|283458684|ref|YP_003363319.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
 gi|283134734|dbj|BAI65499.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1388

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 31/213 (14%)

Query: 2    KQYH---KFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEE---KHWKEV 51
            + Y    + +R+       D+       F S +      +LA  A   D E         
Sbjct: 1163 RIYDTHLQRERQKVLGLLEDMDKNRFTIFQSLTL---LRRLALDAALIDPEAYAGVSSVK 1219

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ 102
             D  ++ L  ++EK     ++V   F   L  +     +         G T ++    I+
Sbjct: 1220 RDYLVQQLPDLLEK--GHRVLVFSQFTGYLKSISARLAKEGIGHLYLDGSTRNRAE-VIE 1276

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G+ P+      + G GLNL    ++ +    WW+    QQ ++RI      + G  
Sbjct: 1277 AFTSGQEPVFLISLKAGGFGLNLTEADHVFIM-DPWWNPAAEQQAVDRI-----HRIGQD 1330

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L+A+ TI+E V+Q   +K+ + D ++
Sbjct: 1331 KEVHVYRLVAEGTIEEKVMQLKESKAALFDAVV 1363


>gi|146308259|ref|YP_001188724.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
 gi|145576460|gb|ABP85992.1| Non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
          Length = 876

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 19/181 (10%)

Query: 29  TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
            ++  Q      +  D           K+ AL  ++E+       +++   F S LA ++
Sbjct: 682 LLRLRQSCCDLRLLGDAGSQLTAADSGKLSALLDMLEELVDEGRRVLLFSQFTSMLALIE 741

Query: 86  KAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                         G T D+    ++ +  G+ P+      + G GLNL    + ++ F 
Sbjct: 742 AELQARKIAYAKLTGSTQDRR-TPVERFQAGEFPVFLISLKAGGSGLNLT-AADTVIHFD 799

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFVY LI + +++E + Q  + K+++   +L 
Sbjct: 800 PWWNPAAEAQASDR-----AYRIGQDKPVFVYKLITRGSVEEKIQQLQQAKASLARGVLE 854

Query: 197 A 197
            
Sbjct: 855 G 855


>gi|222528487|ref|YP_002572369.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222455334|gb|ACM59596.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1139

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 89/214 (41%), Gaps = 27/214 (12%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++     E       S   +  Q+        E+    +    K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSVGFEKSQIKIFSLLTRLRQICCHPKLVFED---YKGSSGK 973

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            ++AL+ I++ +  +   +I+   + S L+ ++K   + + L          +     +  
Sbjct: 974  MEALKEILQDSLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+     Q   R       + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPAVENQATAR-----AHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|170739234|ref|YP_001767889.1| non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
 gi|168193508|gb|ACA15455.1| Non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
          Length = 1120

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +K  Q              K     K+  L+ ++E   A    ++V   F S L  ++ 
Sbjct: 930  LLKLRQACCDPRLLKLAPPPKAG-SAKLDRLDELLESLIAEGRRVLVFSQFTSMLDLIKP 988

Query: 87   AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                         GR+ D+    ++ +  G+ P+      + G GLNL    + ++ +  
Sbjct: 989  RLTLAKTPCLELTGRSRDRAE-VVRRFEAGEAPVFLISLKAGGTGLNL-VAADTVILYDP 1046

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q I+R       + G  + VFV+ L+A  TI+E +      K  + D L +
Sbjct: 1047 WWNPAVEAQAIDR-----AHRIGQDKPVFVHKLVASRTIEEKMGVLKERKGALADSLFD 1100


>gi|220910355|ref|YP_002485666.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
 gi|219866966|gb|ACL47305.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
          Length = 1403

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +++    L   +  A        ++ +K  +    A     +     +   K+
Sbjct: 1179 MAFYEALRQQAITKLSESDATAGAKHLQVLAEIMKLRRACCNARLVMPDTP---LPSAKL 1235

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW 104
            +    ++E+  AN    +V   F   L  ++    + +             +    +  +
Sbjct: 1236 QLFGEVLEELLANQHKALVFSQFVDHLQLIRAYLEEQKITYQYLDGSTPAAERKKRVDAF 1295

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+     Q  +R       + G  R 
Sbjct: 1296 QAGQGDVFLISLKAGGTGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQHRP 1349

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+A++TI+E ++   + K  + D LL+ 
Sbjct: 1350 VTIYRLVAKHTIEEKIVDLHQHKRDLADSLLDG 1382


>gi|326332924|ref|ZP_08199181.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325949282|gb|EGD41365.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 1055

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 2    KQYHK---FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y      +R+    L  + N       S   +  QL+      D E     V   K+ 
Sbjct: 836  KIYDAHLAKERQRILHLLDDFNDNRVAILSALTRLRQLSLDPGLVDPEDD--HVGSAKLD 893

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
             L   IE+  A     +V   F S L R         +  A+  G T D+    I+ + +
Sbjct: 894  TLVDHIEELAAEGHKALVFSQFTSFLGRARTRLAEAGIDAAYLDGATRDR-GAVIESFRD 952

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GL L     + V    WW+     Q ++R       + G  + V 
Sbjct: 953  GDAPVFLISLKAGGVGLTLTEADYVFVL-DPWWNPAAEAQAVDR-----AHRIGQTQHVM 1006

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L++ +TI+E V++    K+ +   +++ 
Sbjct: 1007 VYRLVSTDTIEEKVMELKERKAELFAKVVDG 1037


>gi|119897130|ref|YP_932343.1| SWI/SNF family helicase [Azoarcus sp. BH72]
 gi|119669543|emb|CAL93456.1| SWI/SNF family helicase [Azoarcus sp. BH72]
          Length = 1098

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 70/180 (38%), Gaps = 19/180 (10%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
             +K  Q+     +        K     K+  L  ++ +       I+V   F   LA + 
Sbjct: 902  LLKLRQVCCDPRLLKTTAAAAKVKERAKLDLLMSMLPELIDEGRRILVFSQFTQMLALIA 961

Query: 86   KAFPQGR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                + +         T D+    ++++ +G+ P+      + G GLNL    + ++ + 
Sbjct: 962  AELDKAKIGWVALTGDTRDRR-IPVEDFQKGRAPVFLISLKAGGVGLNLTT-ADTVIHYD 1019

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+     Q  +R       + G  + VFV+ LI   +I+E +L     K+ +   +L+
Sbjct: 1020 PWWNPAAENQATDR-----AHRIGQDKPVFVFKLICAGSIEERILSLQDKKAALAASVLS 1074


>gi|254384222|ref|ZP_04999566.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
 gi|194343111|gb|EDX24077.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
          Length = 936

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 19/182 (10%)

Query: 27  SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
                  Q+ N  A Y  EE+        K+  L+ +++   A    ++V   + +    
Sbjct: 736 KLLASLKQICNHPAQYLKEEQPRIAHRSGKLALLDELLDTILAEGGSVLVFTQYVTMARL 795

Query: 84  LQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +++              G  + +    +  +  G++P+      + G GLNL   G+ ++
Sbjct: 796 IERHLAARGIANQLLHGGTPVPRREELVDRFQAGEVPVFLLSLKAAGTGLNLTRAGH-VI 854

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F  WW+    +Q  +R       + G  + V V+ +IA+ T+++ + + L  K  + D 
Sbjct: 855 HFDRWWNPAVEEQATDR-----AYRIGQTQPVQVHRIIAEGTVEDRIAEMLEAKRALADA 909

Query: 194 LL 195
           +L
Sbjct: 910 VL 911


>gi|300784409|ref|YP_003764700.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299793923|gb|ADJ44298.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 933

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   +++                +  Q+ N  A +  E          K+ A 
Sbjct: 708 LYEAVVRENLAEIRETQGIKRRGQVLQLLNELKQICNHPAQFLKEPHGALTGRSGKLAAF 767

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEG 107
           E +++        ++V   +      L++               R+  K    +  +  G
Sbjct: 768 EELLDVILDEGESVLVFSQYVQLCRLLERRLKDRGLPTELLSGERSPAKRQDMVDRFQAG 827

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +IP+      + G GLNL    + ++ +  WW+     Q  +R       + G  R V V
Sbjct: 828 EIPVFLLSLKAGGVGLNLTRATH-VIHYDRWWNPAVEDQATDR-----AYRIGQDRPVQV 881

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + LIA+ T++E + Q L  K  + + ++ A
Sbjct: 882 HRLIAEGTLEERIAQVLEKKRGLAESIVGA 911


>gi|163791108|ref|ZP_02185528.1| Snf2 family protein [Carnobacterium sp. AT7]
 gi|159873664|gb|EDP67748.1| Snf2 family protein [Carnobacterium sp. AT7]
          Length = 1075

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 23/207 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  +E    + G   +       +   +  Q+      + ++    E    K++ L+
Sbjct: 852  AYLQRIQESVNSMNGAEFKKNRIEILAGLTRLRQICCDPKLFIDD---YEGDSGKLEQLK 908

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
              ++ A  N   I++   F S LA ++K   Q         G+T  K+    +  +N G+
Sbjct: 909  ETVQTARENGRRILIFSQFTSMLAIIEKELAQQSVETFYLSGQTKPKERIEMVNRFNAGE 968

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+    +Q   R       + G K+ V V 
Sbjct: 969  KEVFLISLKAGGTGLNLT-GADMVILYDLWWNPAVEEQAAGR-----AHRIGQKKVVQVL 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LIA+ TI+E + Q  + K  + D ++
Sbjct: 1023 RLIAEGTIEEKIDQLQQEKKALFDQII 1049


>gi|226360762|ref|YP_002778540.1| helicase [Rhodococcus opacus B4]
 gi|226239247|dbj|BAH49595.1| putative helicase [Rhodococcus opacus B4]
          Length = 1073

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L  + +   F          QL+  A   D+E  + +V   K+ 
Sbjct: 854  KVYDTHLQRERQKILGLLADVDKNRFTILQSLTLLRQLSLDAGLVDDE--YHDVPSAKVD 911

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEG 107
            AL   +    A     +V   F   L +++                  +    ++++ EG
Sbjct: 912  ALLEQLADVVAGGHRALVFSQFTGFLGKVRDRLDDAGIAHAYLDGATRRRGDVLRDFKEG 971

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL       +    WW+     Q ++R       + G  R V V
Sbjct: 972  DAPVFLISLKAGGFGLNLTEADYCFIL-DPWWNPATEAQAVDR-----AHRIGQTRNVMV 1025

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++TI++ V+     KS +   +++A
Sbjct: 1026 YRLIAKDTIEDKVMALKAKKSALFSSVMDA 1055


>gi|328881666|emb|CCA54905.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 948

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-------DEEKHWKEVHD 53
            Y    RE    ++     A             Q+ N    Y                  
Sbjct: 716 LYEAVVRETMAQIEEAEGMARRGLVMKLLTSLKQICNHPAQYLKEAAPRGSGTARLAGRS 775

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ +++   A    ++V   + S    L                G  + +    +
Sbjct: 776 GKLALLDELLDTILAEDGSVLVFTQYVSMARLLADHLAARGIQAQLLHGGTPVAERERMV 835

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G++P+      + G GLNL   G+ +V +  WW+    +Q  +R       + G 
Sbjct: 836 DRFQAGEVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEEQATDR-----AYRIGQ 889

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V V+ L+A+ T+++ + + LR K  + D +L + + 
Sbjct: 890 TQPVQVHRLVAEGTVEDRIAEMLRAKRALADAVLGSGEA 928


>gi|312623213|ref|YP_004024826.1| SNF2-like protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203680|gb|ADQ47007.1| SNF2-related protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 1140

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 27/214 (12%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++     E       S   +  Q+        E+    +    K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFED---YKGSSGK 973

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ + K   + + L          +     +  
Sbjct: 974  MEALKEILQDCLESGHRVIIYSQWTSMLSIINKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+     Q   R       + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPAVENQATAR-----AHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|302871105|ref|YP_003839741.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573964|gb|ADL41755.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 1139

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 27/214 (12%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++     E       S   +  Q+        E+    +    K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFED---YKGSSGK 973

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ ++K   + + L          +     +  
Sbjct: 974  MEALKEILQDCLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+     Q   R       + G K 
Sbjct: 1034 FNSGEKNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPAVENQATAR-----SHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|262371025|ref|ZP_06064348.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
 gi|262314101|gb|EEY95145.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
          Length = 1115

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 25/213 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +  +   +Q    E              +K  Q+         +     + +  
Sbjct: 889  KLYEAVRATMQASIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKIGQANSA 948

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
            K++ L  ++         I++   F S L  +++             G+T  +D   I  
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQHLHYAEIGYVKLTGKTKKRDE-VITA 1007

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G++P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 1008 FQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDRAW-----RIGQNK 1061

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VFVY LI   +I+E ++   + K+ +   +L+
Sbjct: 1062 PVFVYKLITNKSIEEKIIALQQNKAELAHSILS 1094


>gi|229489289|ref|ZP_04383153.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
 gi|229323782|gb|EEN89539.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
          Length = 1060

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 21/204 (10%)

Query: 6    KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R+    L  + +   F          QL+      DEE     V   K+ AL   ++
Sbjct: 848  QRERQKILGLLDDVDKNRFTILQSLTLLRQLSLDVSLVDEESGP--VPSAKVDALVEQLD 905

Query: 65   K--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               A     ++   F           D  R+  ++  G T ++    ++E+  G +P+  
Sbjct: 906  DVIAGGHRALIFSQFTGFLGSVRNRLDEERIPYSYLDGSTRNRGE-VLEEFKSGAVPVFL 964

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL       +    WW+     Q ++R       + G  R V VY LIA+
Sbjct: 965  ISLKAGGFGLNLTEADYCFIL-DPWWNPAAEAQAVDR-----THRIGQTRNVMVYRLIAK 1018

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            +TI+E V+     KS +   +++A
Sbjct: 1019 DTIEEKVMALKAKKSALFSNVMDA 1042


>gi|227529368|ref|ZP_03959417.1| SNF2 helicase associated domain protein [Lactobacillus vaginalis ATCC
            49540]
 gi|227350725|gb|EEJ41016.1| SNF2 helicase associated domain protein [Lactobacillus vaginalis ATCC
            49540]
          Length = 1173

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 27/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y      L   LQ ++ E F        ++  +  QL       + +         K+
Sbjct: 951  KLYQARATRLVKRLQSQDDEEFKNNRFEMLAEITRLRQLCCSPKLLNAD---YRGRSGKV 1007

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEW 104
                 +I  E A    I++   F S LA L++   +         G+T   D    ++E+
Sbjct: 1008 DQTMELIRDEIAAGHKILLFSQFTSALAILRQRIEKEQISDFVIEGKTKKSDRQAFVKEF 1067

Query: 105  NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N    P +      + G GLNL    ++++ F  WW++    Q  +R       + G + 
Sbjct: 1068 NTYNGPAIFLISLKAGGTGLNLT-SADVVIHFDPWWNVAAENQATDR-----AHRIGQQH 1121

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V +Y +IA++TI+E ++   + KS + + +L+ 
Sbjct: 1122 NVSIYKMIAKDTIEERIIAMQKQKSELANAILSG 1155


>gi|254443232|ref|ZP_05056708.1| Type III restriction enzyme, res subunit family [Verrucomicrobiae
           bacterium DG1235]
 gi|198257540|gb|EDY81848.1| Type III restriction enzyme, res subunit family [Verrucomicrobiae
           bacterium DG1235]
          Length = 824

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 26/222 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK-------TVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y   ++    ++        +  +         ++  Q        D  K        
Sbjct: 602 KTYEAARQNAEAEISQLEKSGASEGALRMKTLTQLLRLRQTCCDPRLLD--KSLDATASS 659

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE 103
           K+ +   ++E++      I+V   F S         D   +   +  G T ++     + 
Sbjct: 660 KLNSFLELLEESIDGGHRILVFSQFVSLLSILKEQLDSENIPYCYIDGSTRNRMAEVDRF 719

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +   IP+      + G GLNL    + +V F  WW+     Q  +R       + G  +
Sbjct: 720 NDSDDIPIFLISLKAGGTGLNLT-AADTVVHFDPWWNPAAEAQATDR-----AHRIGQTK 773

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V  Y LI  ++++E VLQ  + K  + + +  A +     +
Sbjct: 774 VVTSYKLIVSDSVEEKVLQLQQQKRKLLEDVFEASEAANAKI 815


>gi|218960404|ref|YP_001740179.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729061|emb|CAO79972.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1065

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 17/183 (9%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR 83
             +   K  Q+ N     + +   +     K++ L  ++ +A      +++   F   L+ 
Sbjct: 868  LAALTKLRQVCNHPHLANGDILPELEASSKLEQLLELVTEATNAGHKVLIFSQFVQMLSI 927

Query: 84   LQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            ++K          +  G+T D+           +I L      + G GLNL    + ++ 
Sbjct: 928  IRKVLEANSLPYCYLDGQTKDRVTPIKSFETNPEIKLFLISLKAGGTGLNLT-AADTVIL 986

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +  WW+     Q I+R       + G    V V+ LI + T++E +LQ  + K  + + +
Sbjct: 987  YDPWWNPMVENQAIDR-----THRIGQTHKVQVFRLITKGTVEEKILQLQQNKRELFETV 1041

Query: 195  LNA 197
            +  
Sbjct: 1042 IEG 1044


>gi|255327378|ref|ZP_05368452.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255295658|gb|EET75001.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 1384

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 31/213 (14%)

Query: 2    KQYH---KFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEE---KHWKEV 51
            + Y    + +R+       D+       F S +      +LA  A   D +         
Sbjct: 1159 RIYDTHLQRERQKVLGLLEDMDKNRFTIFQSLTL---LRRLALDAALIDPDAYAGVSSVK 1215

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQ 102
             D  ++ L  ++EK     ++V   F   L  +            +  G T ++    I+
Sbjct: 1216 RDYLVQQLPDLLEK--GHRVLVFSQFTGYLKSISVRLAEEGIGHLYLDGSTRNRAE-VIE 1272

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G+ P+      + G GLNL    ++ +    WW+    QQ ++RI      + G  
Sbjct: 1273 AFTSGQEPVFLISLKAGGFGLNLTEADHVFIM-DPWWNPAAEQQAVDRI-----HRIGQD 1326

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L+A+ TI+E V+Q   +K+ + D ++
Sbjct: 1327 KEVHVYRLVAEGTIEEKVMQLKESKAALFDAVV 1359


>gi|168335382|ref|ZP_02693475.1| Non-specific serine/threonine protein kinase [Epulopiscium sp. 'N.t.
            morphotype B']
          Length = 1031

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 8    QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL  ++  ++ E       +  ++  Q+      + E+         K+++   II+ 
Sbjct: 819  KKELMAEIAEDSREKNTIKMLAALMRLRQICAHPSMFLED---YFGGSAKLESALEIIQD 875

Query: 66   --ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP-CTIQEWNEGKIPLLF 113
                   +++   F S LA +         +     G    KD    ++E+NEG + +  
Sbjct: 876  CVEAGHKVLLFSQFTSMLAMISQKLHEKMIRHNTLXGDVRPKDRMKMVEEFNEGDMQVFL 935

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ +  WW+L    Q  +R       + G K  V V+ LIA+
Sbjct: 936  ISLKAGGVGLNLT-AADIVIHYDPWWNLSAQNQATDR-----AYRMGQKNTVQVFKLIAK 989

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            NTI+E + Q   +K+ + + +L+
Sbjct: 990  NTIEEKIKQLQDSKALLSESILS 1012


>gi|167747531|ref|ZP_02419658.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
 gi|167652893|gb|EDR97022.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
          Length = 1117

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  ++ E          S+  +  QL        ++   K V   K 
Sbjct: 896  KLYDAHVKRMQLMLDKQSEEEFKSSKIQILSELTRLRQLCCSPELVFDQYTGKSV---KS 952

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW 104
                 +I+ A      I++   F S ++ L++     +            +K    ++++
Sbjct: 953  DLCIDLIKNAVSGGHKILLFSQFTSMISILEERLQAEKISFYTLTGSVNKEKRARMVEDF 1012

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N     +      + G GLNL    +I++ +  WW+L    Q  +R       + G +  
Sbjct: 1013 NNDDTSVFCISLKAGGTGLNLT-SADIVIHYDPWWNLAVQNQATDR-----AHRIGQENV 1066

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI + TI++ +++    K  + D +L  
Sbjct: 1067 VMVYRLIVEGTIEDNIVKLQEKKKELADQILGG 1099


>gi|114777053|ref|ZP_01452073.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
 gi|114552574|gb|EAU55034.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
          Length = 1095

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 20/201 (9%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K  R+    + G            +K  Q+                   K+  L  ++ 
Sbjct: 880  QKRVRDAVASM-GVAQSQIVVLDALMKMRQVCCDPRLV-SGLQGALPASAKLTMLMEMLP 937

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLF 113
            +       +++   F S L  ++              G+T D+    ++ +  G++PL  
Sbjct: 938  EMIEEGRRVLLFSQFTSMLKLIEAEVTAAGIDYVKLTGQTRDR-ETPVERFQNGEVPLFL 996

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ +  WW+     Q  +R       + G  +AVFVY L+ +
Sbjct: 997  ISLKAGGVGLNLT-AADTVIHYDPWWNPAVEAQATDR-----AHRIGQDKAVFVYKLLTE 1050

Query: 174  NTIDELVLQRLRTKSTIQDLL 194
             T++E +L+    K  + D +
Sbjct: 1051 GTVEERILEMQDRKRELADSI 1071


>gi|320354706|ref|YP_004196045.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320123208|gb|ADW18754.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 1363

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 81/212 (38%), Gaps = 24/212 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            ++ Y   +++   +++G + +        ++ ++  +        +++    ++   K++
Sbjct: 1142 LQFYEALRQQAIENIEGSSEKTGRHLRILAEIMRLRRACCNPRLINDQ---VDIPSTKLQ 1198

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
                 +E+        ++   F   LA ++          K         +    ++ + 
Sbjct: 1199 VFAETVEELLGGGHKALIFSQFTGHLALIRDFLDDRGISYKYLDGTTPAKERQQQVERFQ 1258

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  L      + G GLNL    + ++    WW+     Q  +R       + G KR V
Sbjct: 1259 AGEGDLFLISLKAGGLGLNLT-AADYVIHMDPWWNPAVEDQAADR-----AYRIGQKRPV 1312

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+  NTI+E +++  + K  + + LL  
Sbjct: 1313 TVYRLVTANTIEEKIVRLHQEKRDLANSLLEG 1344


>gi|229824793|ref|ZP_04450862.1| hypothetical protein GCWU000182_00142 [Abiotrophia defectiva ATCC
            49176]
 gi|229791122|gb|EEP27236.1| hypothetical protein GCWU000182_00142 [Abiotrophia defectiva ATCC
            49176]
          Length = 1073

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 83/211 (39%), Gaps = 23/211 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            M      ++++  ++     E       +   +  Q+      + E     E    K+  
Sbjct: 853  MSYLEDMKKKINNEINKNGFEKSRMMILASLTRLRQICCHPSTFLEN---YEGGSGKLSL 909

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE 106
            L  +++ A  +   I+V   F S L  +++ F + +           + +    ++ +N 
Sbjct: 910  LLQLVQNAVESGHRILVFSQFTSMLNLVEEEFKKLKISYYYLDGSTPIAQRSEDVKAFNN 969

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL  G ++++ +  WW+     Q  +R+      + G K +V 
Sbjct: 970  GSREVYLISLKAGGTGLNL-VGADMVIHYDPWWNPAVEDQATDRV-----YRIGQKNSVN 1023

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LI + TI+E + +    K  + D ++ A
Sbjct: 1024 VVKLITKGTIEEKIYKLQEKKKNLADSVIKA 1054


>gi|90409119|ref|ZP_01217240.1| Snf2 family protein [Psychromonas sp. CNPT3]
 gi|90309770|gb|EAS37934.1| Snf2 family protein [Psychromonas sp. CNPT3]
          Length = 1080

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
             +K  Q          E   +     K+  L  ++ +       I++   F + L  +++
Sbjct: 887  LLKLRQACCDPRLVKLEHAKEVKSSAKLDFLMNMVSEMVEEGRRILIFSQFATMLTLIEE 946

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +         G+T D+    I+ +  G++P+      + G GLNL    + ++ +  
Sbjct: 947  ELIEKGIDFVKLTGQTRDR-GAIIERFQSGEVPIFLISLKAGGVGLNLT-AADTVIHYDP 1004

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            WW+     Q  +R       + G  + VFVY LI + T++E VL     K  + D +
Sbjct: 1005 WWNPAVENQATDR-----AYRIGQDKPVFVYKLICEQTVEERVLALHARKQKLADSV 1056


>gi|17232392|ref|NP_488940.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
 gi|17134038|dbj|BAB76599.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
          Length = 869

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y   +R+    L   N EA N      ++ +K  +          +    E+   K++  
Sbjct: 650 YEALRRQAISKLSDSNAEAGNKHLQVLAEIMKLRRACCNPSLVMPD---TELSSSKLQLF 706

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
             ++ +   N    +V   F   L  ++    +             + +    +  +  G
Sbjct: 707 GEVLGELLENRHKALVFSQFVDHLHIIRNYLDKQGINYQYLDGSTSVSERKKRVDAFQAG 766

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 767 NGDVFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQQRPVTI 820

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+A++TI+E +++    K  + D LL  
Sbjct: 821 YRLVAKDTIEEKIVELHHHKRDLADSLLEG 850


>gi|300854652|ref|YP_003779636.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434767|gb|ADK14534.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1088

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 8    QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + EL  +++ + I        S   +  Q+      + E     E  + K++AL  I++ 
Sbjct: 873  KEELNNEIRDKGINKSKIKILSIITRLRQICCDPSTFIEN---YESDNGKMEALMGIVQN 929

Query: 66   A--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTL-DKDPCTIQEWNEGKIPLLF 113
            +  +   I++   F S L           ++  +  G    +K    ++E+NEG+IP+  
Sbjct: 930  SVNDGHKILLFSQFTSVLKNIGDMFKNENIKYMYLDGSVKAEKRGEMVREFNEGQIPIFL 989

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ +  WW+     Q  +R       + G K+ V V  LIA+
Sbjct: 990  ISLKAGGTGLNLT-SADIVIHYDPWWNPAVENQASDR-----AHRIGQKKTVEVIRLIAK 1043

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
             TI+E + +    K  I + ++ 
Sbjct: 1044 GTIEEKIHKIQDKKKEIINNVIE 1066


>gi|303238661|ref|ZP_07325194.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302593780|gb|EFL63495.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 1088

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQR----ELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F +    E+  +++ + IE       +   +  Q+      + E     +    K
Sbjct: 865  KLYAAFLKQAQGEVAAEIREKGIERSKIKILALLTRLRQICCHPAMFVEN---YKGGSGK 921

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQE 103
            +  L  II  +  +   +++   F S    + KA  +         G T  K+    +  
Sbjct: 922  LDTLLEIIGDSIDSGHRLLLFSQFTSMHDIIGKALKESGKSYFYIDGSTKAKERIDMVNR 981

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  L      + G GLNL  G ++++ +  WW+     Q  +R       + G  +
Sbjct: 982  FNNGENDLFLISLKAGGTGLNLT-GADMVIHYDPWWNPAVEDQATDR-----AYRIGQTK 1035

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            AV V+ +I + TI+E + +    K  + + ++ 
Sbjct: 1036 AVQVFKIITKGTIEEKIYELQEKKRGLINNVIQ 1068


>gi|34495520|ref|NP_899735.1| SWI/SNF family helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101375|gb|AAQ57744.1| probable SWI/SNF family helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 910

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 25/211 (11%)

Query: 3   QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   ++E    +   +  A      + ++  +  +          +     +   K+ A
Sbjct: 688 VYEAMRQEALARVAEADPAAGGQTMQALAELTRLRRFCCHPKLTQPD---SALPASKLAA 744

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
              I E+   N    +V   F   LA + +   Q               +   ++  +  
Sbjct: 745 FAEICEELLDNGHKALVFSQFVDHLALVAEHLRQRGVRFHYLDGGTPSRQRKASMDAFQA 804

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   L      + G GLNL    + ++    WW+     Q  +R       + G +R V 
Sbjct: 805 GDGDLFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AYRMGQQRPVT 858

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VY L+A  TI+E +++  R K  + D LL  
Sbjct: 859 VYRLVAAGTIEEKIVELHRDKRALADSLLAG 889


>gi|229817614|ref|ZP_04447896.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
 gi|229785403|gb|EEP21517.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
          Length = 1229

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 80/215 (37%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       F++      ++     ++      VY D           
Sbjct: 1007 KLYAAHEQRLRASLNSVEDADFDTNRIRILAELTLLREICCAPKLVYEDANG-----ASA 1061

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQ 102
            K+ A++ ++         ++V   F S L  +   F           G T  +     + 
Sbjct: 1062 KLDAIDDLVASCMDAGKKVLVFSQFTSFLDLIGDRFTAHGVPFYTITGETPKRKRVDLVN 1121

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N   +P+      +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1122 QFNMDDVPVFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQSQATDR-----AHRIGQT 1175

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY ++AQ+TI+E +L+  + KS +     + 
Sbjct: 1176 QDVNVYQIVAQHTIEERILRLQKEKSALARQFTDG 1210


>gi|313623518|gb|EFR93710.1| SNF2 family helicase [Listeria innocua FSL J1-023]
          Length = 650

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y  +  ++  DL+  N  A        +   +  Q+      + E     +    K+  
Sbjct: 423 IYLAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQ 479

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNE 106
           L   I+ A  N   I++   F   LA +++   +         G+T  K     +  +NE
Sbjct: 480 LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQSLFYMDGKTPAKTRLDMVNAFNE 539

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V 
Sbjct: 540 GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQ 593

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ +I + TI+E +    + K  + D L+ 
Sbjct: 594 VFRMITKGTIEERIFDLQKKKQALVDELIQ 623


>gi|326779993|ref|ZP_08239258.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660326|gb|EGE45172.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1001

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 76/208 (36%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N  A Y  EE         K+  L
Sbjct: 775 LYEAAVRETMAQIEAAEGIARRGLVMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 834

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + +    L                G  + +    +  +   
Sbjct: 835 DELLDTILSEDGSVLIFTQYVTMAKLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQSA 894

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+    +Q  +R       + G  + V V
Sbjct: 895 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPAVEEQATDR-----AYRIGQTQPVQV 948

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +IA+ T+++ + + L +K  + D +L
Sbjct: 949 HRIIAEGTVEDRIAELLESKRVLADAVL 976


>gi|182439336|ref|YP_001827055.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467852|dbj|BAG22372.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1004

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 76/208 (36%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N  A Y  EE         K+  L
Sbjct: 778 LYEAAVRETMAQIEAAEGIARRGLVMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 837

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + +    L                G  + +    +  +   
Sbjct: 838 DELLDTILSEDGSVLIFTQYVTMAKLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQSA 897

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+    +Q  +R       + G  + V V
Sbjct: 898 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPAVEEQATDR-----AYRIGQTQPVQV 951

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +IA+ T+++ + + L +K  + D +L
Sbjct: 952 HRIIAEGTVEDRIAELLESKRVLADAVL 979


>gi|317473515|ref|ZP_07932807.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899026|gb|EFV21048.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1116

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  ++ E          S+  +  QL        ++   K V   K 
Sbjct: 895  KLYDAHVKRMQLMLDKQSEEEFKSSKIQILSELTRLRQLCCSPELVFDQYTGKSV---KS 951

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW 104
                 +I+ A      I++   F S ++ L++     +            +K    ++++
Sbjct: 952  DLCIDLIKNAVSGGHKILLFSQFTSMISILEERLQAEKISFYTLIGSVNKEKRARMVEDF 1011

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N     +      + G GLNL    +I++ +  WW+L    Q  +R       + G +  
Sbjct: 1012 NNDDTSVFCISLKAGGTGLNLT-SADIVIHYDPWWNLAVQNQATDR-----AHRIGQENV 1065

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI + TI++ +++    K  + D +L  
Sbjct: 1066 VMVYRLIVEGTIEDNIVKLQEKKKELADQILGG 1098


>gi|315499178|ref|YP_004087982.1| snf2-related protein [Asticcacaulis excentricus CB 48]
 gi|315417190|gb|ADU13831.1| SNF2-related protein [Asticcacaulis excentricus CB 48]
          Length = 1107

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
             +K  Q+         +   ++    K+  L  ++         +I+   F S L  +  
Sbjct: 918  LLKLRQVCCDPSLLKIDGT-EDAPSAKLDRLMEMVTALAEEGRRLIIFSQFTSMLDLIAA 976

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +         G+T ++    +  +  G  P+      + G GLNL    + ++ +  
Sbjct: 977  RLDKAGLGYGILTGKTQNR-KKEVDAFQSGDNPIFLISLKAGGTGLNLT-SADTVILYDP 1034

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q I+R       + G  + VFVY L A+ TI++ + +    K  +   L +
Sbjct: 1035 WWNPAVEAQAIDR-----AYRIGQDKPVFVYRLCAEGTIEDKMDEMKARKQALSHALFD 1088


>gi|158320075|ref|YP_001512582.1| non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
 gi|158140274|gb|ABW18586.1| Non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
          Length = 1085

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 27/212 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + +E+   L+ E              +   +  Q+      + E          K
Sbjct: 861  KIYVGYLKEIQGSLEEEIREYGFERSQIKILAALTRLRQICCHPAMFIENYT---GTSGK 917

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQE 103
             + L+ IIE A      I++   F S L+ +++                 +++    + +
Sbjct: 918  FELLQEIIENAIEGKHRILLFSQFTSMLSIIREMLESLNISYYYLDGSTPMEERGKLVSD 977

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   +      + G GLNL  G ++++ F  WW+    +Q  +R       + G + 
Sbjct: 978  FNKGNSDVFLISLKAGGTGLNLT-GADMVIHFDPWWNPAVEEQATDR-----AYRIGQQN 1031

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +V V  LI + TI+E + +    K  + D ++
Sbjct: 1032 SVHVMKLITKGTIEEKIAKLQERKRELIDAVI 1063


>gi|119943907|ref|YP_941587.1| SNF2-related protein [Psychromonas ingrahamii 37]
 gi|119862511|gb|ABM01988.1| SNF2-related protein [Psychromonas ingrahamii 37]
          Length = 1080

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 22/179 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q          E         K+      L  +IE+     I++   F   L  +
Sbjct: 887  LLKLRQACCDPRLVKLEHAKNIKSSAKLDYLMGVLPEMIEE--GRRILIFSQFAQMLGLI 944

Query: 85   QKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +++            G+T ++    I ++  G +P+      + G GLNL    + ++ +
Sbjct: 945  EQSLLASDIDFVKLTGQTRNRSE-VIDKFQNGNVPIFLISLKAGGVGLNLT-AADTVIHY 1002

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              WW+     Q  +R       + G  + VFVY LI ++T++E VL     K  + D +
Sbjct: 1003 DPWWNPAVENQATDR-----AYRIGQDKPVFVYKLICEHTVEERVLALQTRKQKLADSV 1056


>gi|70729334|ref|YP_259071.1| helicase/SNF2 domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68343633|gb|AAY91239.1| helicase/SNF2 family domain protein [Pseudomonas fluorescens Pf-5]
          Length = 875

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 18/183 (9%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ- 85
            +K  Q+       ++    +     K+ +L  ++E+       I++   F S L+ ++ 
Sbjct: 676 LLKLRQVCCDLRLVNDSPPTRGSSSGKLDSLMEMLEELFEEGRRILLFSQFTSMLSLIEA 735

Query: 86  --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    A   G+T D+    ++++  GK+ +      + G GLNL    + ++ +  
Sbjct: 736 ELKRRNIAYALLTGQTRDRR-TPVRDFQSGKLQIFLISLKAGGVGLNLTE-ADTVIHYDP 793

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WW+     Q  +R       + G ++ VFVY LIA+ T++E +    + KS +   +L+ 
Sbjct: 794 WWNPATESQATDR-----AYRIGQEKPVFVYKLIARGTVEEKIQHLQQEKSDLAAGVLDG 848

Query: 198 LKK 200
            K 
Sbjct: 849 RKA 851


>gi|283795073|ref|ZP_06344226.1| Snf2 family protein [Clostridium sp. M62/1]
 gi|291077403|gb|EFE14767.1| Snf2 family protein [Clostridium sp. M62/1]
          Length = 254

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++     +++   +LQ   +      ++  +  Q+        E          K++   
Sbjct: 39  VRLMESLEKQSDEELQKGKL---QILAELTRLRQICCAPEMLYEN---YSETSCKVETCM 92

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
            +I +A      I++   F S    L+K   Q +            +      +++N G 
Sbjct: 93  ELIHQAMSGNHKILLFSQFTSVFPILEKRLLQEKIPYYELTGQTSKENRMRMTEQFNSGD 152

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P+      + G GLNL    +I++ F  WW+L    Q  +R       + G ++ V V+
Sbjct: 153 VPVFLISLKAGGTGLNLT-AASIVIHFDPWWNLAAQNQATDR-----AHRIGQEKQVTVF 206

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 207 KLIAQNTIEEKIIKLQQEKQKLSSQILDG 235


>gi|292900753|ref|YP_003540122.1| helicase [Erwinia amylovora ATCC 49946]
 gi|291200601|emb|CBJ47732.1| putative helicase [Erwinia amylovora ATCC 49946]
          Length = 852

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 725 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 782

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 783 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|292486850|ref|YP_003529720.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
 gi|291552267|emb|CBA19304.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
          Length = 852

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 725 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 782

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 783 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|237747228|ref|ZP_04577708.1| helicase [Oxalobacter formigenes HOxBLS]
 gi|229378579|gb|EEO28670.1| helicase [Oxalobacter formigenes HOxBLS]
          Length = 1126

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 68   AAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
               I+V   F S L+         R+  A   G T D+    I+ + +GK+P+      +
Sbjct: 967  KRHILVFSQFTSMLSLIEKELNSRRIPYALLTGDTADRASA-IRHFQDGKVPVFLISLKA 1025

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL    + ++ +  WW+     Q  +R       + G  + VFVY LIA+ T++E
Sbjct: 1026 GGVGLNLT-AADTVIHYDPWWNPAVENQATDRAW-----RIGQDKPVFVYKLIAKGTLEE 1079

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIHV 205
             + +  + K+ + + +L++ + + + +
Sbjct: 1080 QIQELQQRKADLANAMLSSGQAQHVQI 1106


>gi|313637601|gb|EFS03000.1| DNA/RNA helicase protein [Listeria seeligeri FSL S4-171]
          Length = 512

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 21/208 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 288 LAYLEKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 344

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
             I+ A  N   +++   F   LA +++   +         G+T  K     +  +NEG+
Sbjct: 345 DTIQTARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGE 404

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 405 NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 458

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +I + TI+E + +  + K  + D L+ 
Sbjct: 459 RMITKGTIEERIFELQKKKQALVDELIQ 486


>gi|315303447|ref|ZP_07874044.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
 gi|313628192|gb|EFR96728.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
          Length = 1072

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEESSGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   LA +++   +         G+T  +     +  +NEG+
Sbjct: 904  DTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPSRTRLDMVNSFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|325277313|ref|ZP_08142939.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
 gi|324097548|gb|EGB95768.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
          Length = 1105

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 17/183 (9%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
             +K  Q+     +    E    +    K+ AL  ++++  +    +++   F S LA ++
Sbjct: 906  LLKLRQVCCDLRLVKGVESKGNQADKGKLGALLQMLDELLSEGRRVLLFSQFTSMLALIE 965

Query: 86   KAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +   + +                +Q++ +G   +      + G GLNL    + ++ F  
Sbjct: 966  QELQKRQIRYSLLTGDTRDRRTPVQQFQQGDSEVFLISLKAGGVGLNLT-AADTVIHFDP 1024

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G  + VFV+ LI + T++E +    + K+ +   LL+ 
Sbjct: 1025 WWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEKIQALQQEKAALAASLLDG 1079

Query: 198  LKK 200
             + 
Sbjct: 1080 GQA 1082


>gi|312170918|emb|CBX79177.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 852

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 725 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 782

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ + + +LN
Sbjct: 783 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILN 832


>gi|308446187|ref|XP_003087115.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
 gi|308262104|gb|EFP06057.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
          Length = 437

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 26  ASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
            S  +K  Q+         ++   + V   K+  L  +++        I++   F + L 
Sbjct: 243 LSALLKLRQVCCHPSLLQLDQVKNQNVESAKLDHLLEMVQDMVEEGRKILIFSQFTTMLQ 302

Query: 83  RLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++             G+T  +D   I  +  G IP+      + G GLNL    + ++
Sbjct: 303 LIEEHLKTLNIRNVKLTGQTKKRDE-VITAFQAGDIPVFLISLKAGGVGLNLT-AADTVI 360

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + VFVY LI   +I+E +L   + K+ +   
Sbjct: 361 HYDPWWNPAAEDQASDRAW-----RIGQDKPVFVYKLITNQSIEEKILALQKNKADLAKS 415

Query: 194 LLN 196
           +L+
Sbjct: 416 ILS 418


>gi|262374572|ref|ZP_06067846.1| predicted protein [Acinetobacter junii SH205]
 gi|262310568|gb|EEY91658.1| predicted protein [Acinetobacter junii SH205]
          Length = 1115

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +  +  ++Q    E              +K  Q+         +     + H  
Sbjct: 889  KLYEAVRATMQENIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKTGQAHSA 948

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
            K++ L  ++         I++   F S L  +++             G+T  +D   I  
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQQLHHAEIGYVKLTGKTKKRDE-VITA 1007

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G++P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 1008 FQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDRAW-----RIGQDK 1061

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VFVY LI   +I+E +L   + K+ +   +L+
Sbjct: 1062 PVFVYKLITNKSIEEKILALQQNKAELAQSILS 1094


>gi|320011393|gb|ADW06243.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 964

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 80/213 (37%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N  A Y  EE         K+  L
Sbjct: 738 LYEAAVRETMAFIEQSEGIARRGLIMKLLGSLKQICNHPAQYLKEEPTRLTGRSGKLALL 797

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + S    L                G  + +    +  +  G
Sbjct: 798 DELLDTILSEDGSVLIFTQYVSMARLLSAHLASRSIPSQLLHGGTPVPERERMVDGFQSG 857

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + ++ +  WW+    +Q  +R       + G  + V V
Sbjct: 858 EVPVFLLSLKAAGTGLNLTRAAH-VIHYDRWWNPAVEEQATDR-----AYRIGQTQPVQV 911

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ T+++ + + L++K  + D +L + + 
Sbjct: 912 HRLIAEGTVEDRISELLQSKRALADAVLGSGEA 944


>gi|23100530|ref|NP_693997.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22778763|dbj|BAC15031.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1056

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E    K++ L   I+ A  N   +++   F S    
Sbjct: 863  LAGLTRLRQICCHPSMFIEN---YEGASGKLEQLMETIKTALDNGKRMLIFSQFTSMHEI 919

Query: 84   LQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +Q+   +         G+T  K+     + +N G+  +      + G GLNL  G + ++
Sbjct: 920  IQERLKKEGYGYFYLHGQTSSKERVEMSERFNHGENDIFLISLKAGGTGLNLT-GADTVI 978

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F LWW+     Q   R       + G K+ V V  L+ + TI+E +    + K  + D 
Sbjct: 979  LFDLWWNPAVEDQATGR-----AHRFGQKKVVQVIRLVTEGTIEEKIYDLQQRKRELIDQ 1033

Query: 194  LLN 196
            ++ 
Sbjct: 1034 VIQ 1036


>gi|330504452|ref|YP_004381321.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
 gi|328918738|gb|AEB59569.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
          Length = 876

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 19/181 (10%)

Query: 29  TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
            ++  Q      +  ++          K+ AL  ++++       +++   F S LA ++
Sbjct: 682 LLRLRQSCCDLRLLGEDGGQLTAADSGKLSALLDMLQELVDEGRRVLLFSQFTSMLALIE 741

Query: 86  KAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                         G T D+    ++ +  G+ P+      + G GLNL    + ++ F 
Sbjct: 742 AELQARKIAYAKLTGSTQDRR-TPVERFQAGEFPVFLISLKAGGSGLNLT-AADTVIHFD 799

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFVY LIA+ +++E +    + K+++   +L+
Sbjct: 800 PWWNPAAEAQASDR-----AYRIGQDKPVFVYKLIARGSVEEKIQLLQQAKASLARGVLD 854

Query: 197 A 197
            
Sbjct: 855 G 855


>gi|312794614|ref|YP_004027537.1| SNF2-like protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181754|gb|ADQ41924.1| SNF2-related protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 1108

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 85/211 (40%), Gaps = 23/211 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     + E+  + +G         S   +  Q+      + E     E    K++  E
Sbjct: 892  LKAREDIKNEI--EQKGFEKSKIKIFSILTRLRQICCHPKLFLEN---YEGSSGKLELFE 946

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE-WNEGK 108
             I+E    +    IV   +   L  L++             G T  ++   +   +N G+
Sbjct: 947  EILEDVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKSEERIDMANSFNSGQ 1006

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+     Q ++R       + G + +V V+
Sbjct: 1007 KQVFLISLKAGGFGLNLT-GADVVILYDLWWNPAVENQAMDR-----AHRIGQENSVQVF 1060

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             LI +NTI+E + +  + K  + D ++ + +
Sbjct: 1061 RLITKNTIEERIFELQQKKKDLFDSIVQSAQ 1091


>gi|222528088|ref|YP_002571970.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222454935|gb|ACM59197.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1112

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 91/211 (43%), Gaps = 23/211 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     ++E+  DL+G         S   +  Q+      + +     E    KI+  E
Sbjct: 896  LKAREDIKKEI--DLKGFEKSKIKIFSIFTRLRQICCHPKLFLQN---YEGSSGKIELFE 950

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
             I+E    +   ++V   +   L  L++   +         G T  ++    + ++N G+
Sbjct: 951  EILEDVIESGHRVVVFSQWVEMLKILEERIKEKGFEYFYLDGSTKSEERIDMVNKFNSGQ 1010

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+     Q ++R       + G + +V V+
Sbjct: 1011 KQVFLVSLKAGGFGLNLT-GADVVILYDLWWNPAVENQAMDR-----AHRIGQENSVQVF 1064

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             LI +NTI+E + +  + K  + D ++++ +
Sbjct: 1065 RLITRNTIEERIFELQQKKKDLFDSIVSSAQ 1095


>gi|158334343|ref|YP_001515515.1| SNF2 family helicase putative [Acaryochloris marina MBIC11017]
 gi|158304584|gb|ABW26201.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
          Length = 1407

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 25/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+   +L   + +A        ++ +K  +    A     E         K+
Sbjct: 1185 MALYEALRRQAIANLADSDAQAGAKHLQVLAEIMKLRRTCCNAQLVMPESPP---ASAKL 1241

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEW 104
            +    ++E+  AN    +V   F   L  LQ    +         G T  K     ++ +
Sbjct: 1242 QLFGEVLEELLANHHKALVFSQFVDHLKILQDYLEKKQIAYQYLDGSTPAKIRQLRVKAF 1301

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1302 QSGEGEVFLISLKAGGTGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQRRP 1355

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +Y L+A+NTI+E ++   R K  + D LL   +
Sbjct: 1356 VTIYRLVAKNTIEEKIVDLHRHKRDLADSLLEGTE 1390


>gi|315282593|ref|ZP_07870972.1| SNF2 family helicase [Listeria marthii FSL S4-120]
 gi|313613760|gb|EFR87525.1| SNF2 family helicase [Listeria marthii FSL S4-120]
          Length = 1072

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L+ +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILIFSQFTGMLSIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|284031541|ref|YP_003381472.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283810834|gb|ADB32673.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 961

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 22/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y    REL   ++  +  A             Q+ N  V Y  +           K++ 
Sbjct: 733 LYEATVRELMDAVRASDAMARRGLIVKLLTGLKQICNHPVQYLKEPAGAKLTGRSGKLEL 792

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+ ++    A    ++V   +      L++              G  + K    ++ +  
Sbjct: 793 LDELLGTILAEDGAVLVFTQYVEMARLLERHLADRGVPTQLLHGGTPVRKREEMVERFQA 852

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+IP+      + G GLNL    + +V +  WW+     Q  +R       + G  R V 
Sbjct: 853 GEIPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEDQATDR-----AYRIGQIRPVQ 906

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ TI++ +   L  K  + D +L A + 
Sbjct: 907 VHRLIAEGTIEDRIAAMLAGKRALADSVLTAGEA 940


>gi|297155115|gb|ADI04827.1| SNF2/RAD54 family helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1008

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G +  A             Q+ N  A Y  E++        K++ L
Sbjct: 781 LYEAVVREMLAEISGADGLARRGLIVKLLTGLKQICNHPAQYLKEDRPVIAGRSGKLELL 840

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNE 106
           + +++   A  A ++V   +    AR+ +     R +            +    +  + E
Sbjct: 841 DELLDTILAEDASVLVFTQYVQM-ARILQDHLAARGIGAQLLHGGTPVARRQELVDRFQE 899

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL   G+ +V +  WW+     Q  +R       + G  + V 
Sbjct: 900 GEVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEAQATDR-----AYRIGQTQPVQ 953

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ T+++ +   L  K  + D +L A + 
Sbjct: 954 VHRLIAEGTVEDRIAAILERKRELADAVLGAGEA 987


>gi|295835221|ref|ZP_06822154.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825374|gb|EDY45121.2| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 923

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 87/216 (40%), Gaps = 25/216 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG---AVYYDEEKHWKEVHDEKIK 57
            Y +  R    +++  +  A +           Q+ N     +   E +  +     K+ 
Sbjct: 695 LYEEQVRGTLAEIRSASGIARSGLVLRLLTGLKQICNHPAHFLKEPEPEPGRPGRSGKLA 754

Query: 58  ALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            L+ +   I  A+ A ++V   + +    L++   +          G  + +    ++ +
Sbjct: 755 LLDELLGTILAADGA-VLVFTQYVAMARLLERHLRERGVAAQLLHGGTPVPRREEMVRRF 813

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R 
Sbjct: 814 QDGEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEAQATDR-----AHRIGQTRP 867

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V V+ LIA+ TI++ +   + +K  + D +L + ++
Sbjct: 868 VQVHRLIAEGTIEDRIAALMESKRELADAVLGSGER 903


>gi|259907055|ref|YP_002647411.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
 gi|224962677|emb|CAX54132.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
          Length = 883

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 696 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQK 755

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 756 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 813

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 814 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 863


>gi|320526909|ref|ZP_08028099.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320132877|gb|EFW25417.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 1079

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 24/203 (11%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             Q++   + +   I      ++  +  QL        +     + +  K +    I+E A
Sbjct: 872  LQKQSDEEFKENKIA---VLAELTRLRQLCCDPHLIYDH---YKGNSAKKELCLDIVENA 925

Query: 67   --NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLFA 114
                  I++   F S L  L + F +               +    ++ +    +P+   
Sbjct: 926  IEEGHKILLFSQFTSMLDTLTQEFDKKGIRYHKLVGSTPQFERARMVESFQTDDVPIFCI 985

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    +I++ +  WW+     Q  +R       + G    V V+ LI ++
Sbjct: 986  SLKAGGTGLNLT-AADIVIHYDPWWNTAVENQASDR-----AHRIGQTNVVNVFRLIIKD 1039

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E ++Q  + KS + D +L+ 
Sbjct: 1040 TIEERIIQLQKEKSNLADRILSG 1062


>gi|312877116|ref|ZP_07737087.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796090|gb|EFR12448.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 1126

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 85/211 (40%), Gaps = 23/211 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     + E+  + +G         S   +  Q+      + E     E    K++  E
Sbjct: 910  LKAREDIKNEI--EQKGFEKSKIKIFSILTRLRQICCHPKLFLEN---YEGSSGKLELFE 964

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE-WNEGK 108
             I+E    +    IV   +   L  L++             G T  ++   +   +N G+
Sbjct: 965  EILEDVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKPEERIDMANSFNSGQ 1024

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+     Q ++R       + G + +V V+
Sbjct: 1025 KQVFLISLKAGGFGLNLT-GADVVILYDLWWNPAVENQAMDR-----AHRIGQENSVQVF 1078

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             LI +NTI+E + +  + K  + D ++ + +
Sbjct: 1079 RLITKNTIEERIFELQQKKKDLFDTIIQSAQ 1109


>gi|261337693|ref|ZP_05965577.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277134|gb|EFA22988.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
          Length = 1221

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y   +R+L   LQ       + F   S   +  QL        E          K+ A
Sbjct: 1001 KLYAASERKLRMMLQSSQDMNEDRFQVLSALTQLRQLCCDPRLVFEN---VSHAGAKMDA 1057

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE 106
            +  ++  A  +   +++   F S L  +     +               +    +  +N 
Sbjct: 1058 IAELVTAARESGQKVLIFSQFVSFLDLIADMLDELGVAHMAITGSTPKQRRLELVDTFNM 1117

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P++     + G GLNL  G ++++    WW+     Q  +R       + G +  V 
Sbjct: 1118 DDTPVMLISLKAGGTGLNLT-GASVVIHADPWWNEAAQNQATDR-----AHRIGQRHTVN 1171

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++A +T++E +L     KS +   LL+
Sbjct: 1172 VYKIVASDTVEERILGLQERKSELARTLLD 1201


>gi|251778792|ref|ZP_04821712.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
 gi|243083107|gb|EES48997.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
          Length = 1086

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 24/209 (11%)

Query: 2    KQYHKFQRELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L      ++          S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMEN---YLGTSGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            L  I++ +  +   I+V   F S L  +     +   L                + ++NE
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFNE 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+     Q  +R       + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQATDR-----AHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|227505607|ref|ZP_03935656.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227197760|gb|EEI77808.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1087

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 23/202 (11%)

Query: 8    QRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +R+    L  +          +   +  QLA      + E         K+ A+  ++  
Sbjct: 875  ERQRVLRLLTEDPESNRVEVLAALTRLRQLAISPTLVEPESGA---PSSKLDAMTGLLRD 931

Query: 66   --ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFA 114
              A    +++   F S LA ++              G T D+D   I+ + EG   +   
Sbjct: 932  ILAEEHRVLIFSQFTSYLAEIRARLEAEGVSFSYLDGGTRDRD-AAIRAFTEGNTQVFLI 990

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++    WW+     Q I+R       + G  + V VY L++ N
Sbjct: 991  SLKAGGVGLNLTQ-ADYVIVADPWWNPAAEAQAIDR-----AHRIGQTQPVTVYRLVSAN 1044

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            TI++ V+    TK  +    L 
Sbjct: 1045 TIEDKVVALQDTKRALSSAFLE 1066


>gi|16800753|ref|NP_471021.1| hypothetical protein lin1685 [Listeria innocua Clip11262]
 gi|16414172|emb|CAC96916.1| lin1685 [Listeria innocua Clip11262]
          Length = 1072

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y  +  ++  DL+  N  A        +   +  Q+      + E     +    K+  
Sbjct: 845  IYLAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQ 901

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNE 106
            L   I+ A  N   I++   F   LA +++   +         G+T  K     +  +NE
Sbjct: 902  LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNE 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V 
Sbjct: 962  GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQ 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ +I + TI+E +    + K  + D L+ 
Sbjct: 1016 VFRMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|289706474|ref|ZP_06502828.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
 gi|289556793|gb|EFD50130.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
          Length = 1143

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 30/213 (14%)

Query: 2    KQYHK-FQRE------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y +  QRE      L  D+ G     F S +       LA      D+   +  V   
Sbjct: 916  KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTL---LRMLALAPQIVDD--QYASVPSS 970

Query: 55   KIKA-LEVIIEK-ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQE 103
            K++  L+ + E       +IV   F S L           ++ A+  G T  +    I+ 
Sbjct: 971  KLERFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGRAE-VIRG 1029

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + EG+ P+      + G GL L    + +     WW+     Q ++R       + G +R
Sbjct: 1030 FREGEAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAAEAQAVDR-----AHRIGQER 1083

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V VY L+++ TI+E VL+  R K+ +   L++
Sbjct: 1084 TVMVYRLVSEGTIEEKVLELQRRKAELFGALMD 1116


>gi|282862053|ref|ZP_06271116.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282563078|gb|EFB68617.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 979

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 82/214 (38%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N  A Y  EE         K+  L
Sbjct: 753 LYEAAVRETMTFIESAEGIARRGLIMKLLGSLKQICNHPAQYLKEEPTRLAGRSGKLALL 812

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNE 106
           + +++   A    +++   + S  ARL  A    R +            +    +  +  
Sbjct: 813 DELLDTILAEDGSVLIFTQYVSM-ARLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQS 871

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P+      + G GLNL    + ++ +  WW+    +Q  +R       + G  + V 
Sbjct: 872 AEVPVFLLSLKAAGTGLNLTRAAH-VIHYDRWWNPAVEEQATDR-----AYRIGQTQPVQ 925

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ T+++ + + LR+K  + D +L + + 
Sbjct: 926 VHRLIAEGTVEDRISELLRSKRALADAVLGSGEA 959


>gi|187934555|ref|YP_001886021.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187722708|gb|ACD23929.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 1086

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 24/209 (11%)

Query: 2    KQYHKFQRELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L      ++          S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMEN---YLGTSGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            L  I++ +  +   I+V   F S L  +     +   L                + ++N+
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFND 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+     Q  +R       + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQATDR-----AHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|188587846|ref|YP_001921061.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|188498127|gb|ACD51263.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
          Length = 1086

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 24/209 (11%)

Query: 2    KQYHKFQRELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L      ++          S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMEN---YLGTSGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            L  I++ +  +   I+V   F S L  +     +   L                + ++N+
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFND 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+     Q  +R       + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQATDR-----AHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LIAQ TI+E +++   +K  + D +L
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTIL 1063


>gi|223936025|ref|ZP_03627939.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223895247|gb|EEF61694.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1046

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 20/204 (9%)

Query: 8    QRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK-EVHDEKIKALEVIIE 64
            ++E+   +    +        +  ++  Q+       + +   K      K++    ++E
Sbjct: 830  RKEIVNAVDANGLNKSRMVVLTALLRLRQICCDLRLLESKLEAKPSEPSGKVELFGELLE 889

Query: 65   K--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +       ++V   F + L  L++          +  G T D+     +   + +IP+  
Sbjct: 890  EVVDGGHRVLVFSQFTTMLGLLRERLAAENIEFCYLDGATKDRAQVVERFQRDSRIPVFL 949

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++ F  WW+     Q  +R       + G KR V  Y LI +
Sbjct: 950  ISLKAGGTGLNLT-GADTVIHFDPWWNPAVEAQATDR-----AHRIGQKRVVTSYKLITR 1003

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             T++E +L     K  +   +L  
Sbjct: 1004 GTVEEKILNLQTRKRALFQGMLGG 1027


>gi|116873076|ref|YP_849857.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|116741954|emb|CAK21078.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
          Length = 1072

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y  +  ++  DL+  N  A        +   +  Q+      + E     +    K+  
Sbjct: 845  IYLAYLEKIQADLEESNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQ 901

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNE 106
            L   I+ A  N   I++   F   LA +++   +         G+T  K     +  +NE
Sbjct: 902  LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEEGHSLFYMDGKTPAKTRLDMVNAFNE 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V 
Sbjct: 962  GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQ 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ +I + TI+E +    + K  + D L+ 
Sbjct: 1016 VFRMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|310766267|gb|ADP11217.1| SWI/SNF-like matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia sp. Ejp617]
          Length = 852

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQK 724

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 725 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 782

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 783 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 832


>gi|283476853|emb|CAY72692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
           12163]
          Length = 852

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQK 724

Query: 91  GR---------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R         T D++   ++ + +G++P+      + G GLNL    + ++ +  WW+ 
Sbjct: 725 ARIPFVTLTGATRDRNE-PVRSFQQGEVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNP 782

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  +R       + G  + VFVY LIA  TI+E ++   + K+ +   +L+
Sbjct: 783 AAENQATDRAW-----RLGQDKPVFVYKLIAAGTIEEKIVALQQQKAELAGEILD 832


>gi|239946094|ref|ZP_04698031.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|239992567|ref|ZP_04713231.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 1005

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 27/216 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCL----QLANG-AVYYDEEKHWKEVHDEKIK 57
            Y    RE   ++     + F      +K L    Q+ N  A +  EE+        K++
Sbjct: 778 LYEAVVRETLAEISA--ADGFERRGLVMKLLTSLKQICNHPAQFLKEEQPRIADRSGKVE 835

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEW 104
            L+ +++   A    ++V   +    ARL +     R +D           +    +  +
Sbjct: 836 LLDELLDTILAERGSVLVFTQYVQM-ARLLEEHLAARGVDTQFLHGGTPVARREEMVARF 894

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+ P+      + G GLNL   G+ +V F  WW+     Q  +R       + G  + 
Sbjct: 895 QSGEAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEAQATDR-----AYRIGQTQP 948

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V V+ LIA+ TI++ +   L  K  + D +L + + 
Sbjct: 949 VQVHRLIAEGTIEDRIAGMLARKQGLADAVLGSGEA 984


>gi|330840007|ref|YP_004414587.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
 gi|329747771|gb|AEC01128.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
          Length = 1091

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K YH    + ++E   +L+            +   +  Q+A     + E+         K
Sbjct: 869  KVYHAWFVQAKKEFAAELKAHGFGESRIKILAILTRLRQIACDPALFLEDYT---GGSGK 925

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQE 103
            +  LE ++  A      I++   F + L+ +           A+  G T   +    +++
Sbjct: 926  LDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVRD 985

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G  PL      + G GLNL  G ++++ +  WW+     Q  +R       + G K 
Sbjct: 986  FNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWNPAVEDQATDR-----AYRIGQKN 1039

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   I ++TI+E + +    K  + D ++ 
Sbjct: 1040 NVQVLKFITKDTIEEKIYELQEKKKALIDQMIQ 1072


>gi|323692122|ref|ZP_08106366.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
            WAL-14673]
 gi|323503809|gb|EGB19627.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
            WAL-14673]
          Length = 1079

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 26/210 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y     +L   L+ +   A  S      ++  +  QL        E  +       K++
Sbjct: 858  LYRAAALKLRQSLEEDEKTAETSGKFQILAELTRLRQLCCDPSLCFERYN---GESAKLE 914

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
                ++  A  +   I++   F S L  +     +            T ++    +  ++
Sbjct: 915  TCVSLLLSAAESGHKILLFSQFASMLGIIGNRLKKEGIPFYLLTGSTTKEERNKMVNAFH 974

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              ++P+      + G GLNL    +I++ +  WW++    Q  +R       + G ++ V
Sbjct: 975  RDQVPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVAAQNQATDR-----AHRIGQEKQV 1028

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VY LI ++TI+E +L     K  + D ++
Sbjct: 1029 TVYKLIMKDTIEENILNLQEAKKNLADQIV 1058


>gi|293375830|ref|ZP_06622099.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
 gi|292645538|gb|EFF63579.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
          Length = 1080

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 82/204 (40%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++E++ +++   +E       +  ++  QL      Y E          K+     ++
Sbjct: 861  QMKQEMHHEIEEVGVERSRIKILALLMRLRQLCCHPSLYLEN---YRGESAKLNLCMQLV 917

Query: 64   EK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-QEWNEGKIPL 111
            +   A+   +++   F S L           ++     G T   D   + +++N+    +
Sbjct: 918  QDCIASGHKVLIFSQFTSMLEILGRELKAKEIKFLTLTGATKTSDRLALTEQFNQDDTKV 977

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G ++++ +  WW++    Q  +R       + G  + V V+ L+
Sbjct: 978  FLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQNQATDR-----AHRLGQDKTVQVFKLM 1031

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             +NTI+E +      K  + + ++
Sbjct: 1032 VKNTIEERIQVLQEQKRDLTEAIV 1055


>gi|260888136|ref|ZP_05899399.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
 gi|260862165|gb|EEX76665.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
          Length = 1098

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K YH    + ++E   +L+            +   +  Q+A     + E+         K
Sbjct: 876  KVYHAWFVQAKKEFAAELKAHGFGESRIKILAILTRLRQIACDPALFLEDYT---GGSGK 932

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQE 103
            +  LE ++  A      I++   F + L+ +           A+  G T   +    +++
Sbjct: 933  LDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVRD 992

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G  PL      + G GLNL  G ++++ +  WW+     Q  +R       + G K 
Sbjct: 993  FNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWNPAVEDQATDR-----AYRIGQKN 1046

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   I ++TI+E + +    K  + D ++ 
Sbjct: 1047 NVQVLKFITKDTIEEKIYELQEKKKALIDQMIQ 1079


>gi|326789214|ref|YP_004307035.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
 gi|326539978|gb|ADZ81837.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
          Length = 1119

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 8    QRELYCDLQGENIEAFNS--ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
            ++E+  +L+ + + A +    +   +  QL     +Y  +          K++    I++
Sbjct: 905  KKEMEEELKAKGVGASHIKMLALLTRLRQLCCHPSMYLQDYTE----TSGKLEQCMEIVK 960

Query: 65   KA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDP-CTIQEWNEGKIPLL 112
             +      I++   F + L           ++     G T  ++    + E+N   IP+ 
Sbjct: 961  DSIEAGHKILLFSQFTTMLDILSNRLYSEGIEHFMLTGSTKAEERMRLVNEFNTSDIPVF 1020

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G ++++ +  WW+L    Q  +R       + G K  V V+ +I 
Sbjct: 1021 LISLKAGGTGLNLT-GADVVIHYDPWWNLSSQNQATDR-----AYRIGQKNKVQVFQMIT 1074

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +N+I+E + +    K  + + +L 
Sbjct: 1075 KNSIEEKIKELQDKKIGLTESVLQ 1098


>gi|212715703|ref|ZP_03323831.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
            16992]
 gi|212661070|gb|EEB21645.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 30/223 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     ++      VY D +         
Sbjct: 1017 KLYAAHEQRLRATLTKTKDADFNTKKIRILAEFTLLREICCDPRLVYADAKN-----ASA 1071

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
            K+ A+  ++         ++V   F S L  +     +               +    + 
Sbjct: 1072 KLDAICELVSTCMDEGKKVLVFSQFTSFLDLIGTRLAEHGVDFYTITGETPKKRRVELVD 1131

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   IP+      +   GLNL  G +++V    WW+     Q  +R       + G  
Sbjct: 1132 EFNGNDIPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQNQATDR-----AHRIGQT 1185

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY ++A++TI+E +L+    KS +     +      +  
Sbjct: 1186 QDVNVYQIVAKDTIEERILKLQEKKSELAQQFTDGTASGGVGT 1228


>gi|323486739|ref|ZP_08092059.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
            WAL-14163]
 gi|323399958|gb|EGA92336.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
            WAL-14163]
          Length = 1059

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 26/210 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y     +L   L+ +   A  S      ++  +  QL        E  +       K++
Sbjct: 838  LYRAAALKLRQSLEEDEKTAETSGKFQILAELTRLRQLCCDPSLCFERYN---GESAKLE 894

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
                ++  A  +   I++   F S L  +     +            T ++    +  ++
Sbjct: 895  TCVSLLLSAAESGHKILLFSQFASMLGIIGNRLKKEGIPFYLLTGSTTKEERNKMVNAFH 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              ++P+      + G GLNL    +I++ +  WW++    Q  +R       + G ++ V
Sbjct: 955  RDQVPVFLISLKAGGTGLNLT-AADIVIHYDPWWNVAAQNQATDR-----AHRIGQEKQV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VY LI ++TI+E +L     K  + D ++
Sbjct: 1009 TVYKLIMKDTIEENILNLQEAKKNLADQIV 1038


>gi|325841031|ref|ZP_08167240.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
 gi|325490097|gb|EGC92440.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
          Length = 1080

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 82/204 (40%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++E++ +++   +E       +  ++  QL      Y E          K+     ++
Sbjct: 861  QMKQEMHHEIEEVGVERSRIKILALLMRLRQLCCHPSLYLEN---YRGESAKLNLCMQLV 917

Query: 64   EK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-QEWNEGKIPL 111
            +   A+   +++   F S L           ++     G T   D   + +++N+    +
Sbjct: 918  QDCIASGHKVLIFSQFTSMLEILGRELKAKEIKFLTLTGATKTSDRLALTEQFNQDDTKV 977

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G ++++ +  WW++    Q  +R       + G  + V V+ L+
Sbjct: 978  FLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQNQATDR-----AHRLGQDKTVQVFKLM 1031

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             +NTI+E +      K  + + ++
Sbjct: 1032 VKNTIEERIQVLQEQKRDLTEAIV 1055


>gi|296132117|ref|YP_003639364.1| SNF2-related protein [Thermincola sp. JR]
 gi|296030695|gb|ADG81463.1| SNF2-related protein [Thermincola potens JR]
          Length = 1084

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E          K++ L+ +IE A      I++   F S L  
Sbjct: 891  LAALTRLRQICCHPGLFIENYT---GDSGKMQLLQEVIEDALAGGHRILLFSQFTSMLGI 947

Query: 84   LQK---------AFPQGRTL-DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++          +  G T  ++    ++ +N G   +      + G GLNL  G +++V
Sbjct: 948  IREYLVSQNIEYHYLDGNTRAEQRQEMVRAFNAGDGQVFLISLKAGGTGLNLT-GADMVV 1006

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+     Q  +R       + G ++ V V+ L+ + TI+E +    + K  + D 
Sbjct: 1007 HFDPWWNPAVEDQATDR-----AYRIGQQQVVQVFKLVTRGTIEEKIFTLQQKKKELIDS 1061

Query: 194  LLN 196
            ++ 
Sbjct: 1062 VIQ 1064


>gi|77361962|ref|YP_341536.1| helicase domain-containing protein [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76876873|emb|CAI89090.1| putative protein with helicase domain [Pseudoalteromonas haloplanktis
            TAC125]
          Length = 1351

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 21/208 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
              Y   +         E+ +     +   K  +     +         ++   K+   E 
Sbjct: 1134 ALYEATRLNALEQASQEDSQYITILASLTKLRR---ACIAPQLLIENSKLPSSKLDTAEA 1190

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKI 109
            IIE+   N    ++   F   L  +++   +              +K    + ++  G+ 
Sbjct: 1191 IIEELLENDHQALIFSQFVDVLKLVEQRLKKRGIAYCYLDGSMSSNKRKQQVDKFQAGEA 1250

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            PL      + G GLNL    + ++    WW+    QQ  +R       + G  R V VY 
Sbjct: 1251 PLFLISLKAGGTGLNLT-AADYVLHLDPWWNPAVEQQASDR-----AHRLGQTRPVTVYR 1304

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIAQNTI+E +LQ    K  + D +L+ 
Sbjct: 1305 LIAQNTIEEKILQLHEHKQALADKVLSG 1332


>gi|300786586|ref|YP_003766877.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299796100|gb|ADJ46475.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 838

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 30/220 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYY------DEEKHWKEVH 52
           +  Y    RE+  ++   +  A             Q+ N    Y      DE        
Sbjct: 609 VALYEAVVREMMAEIAASDGMARRGRIVKLLTALKQICNHPAQYLKARSLDEGG----GR 664

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ L+ +++   A    ++V   + +    L+K              G  + +    
Sbjct: 665 SGKVELLDELLDTILAEDGAVLVFTQYVAMARLLEKHLAGRGIATQLLHGGTPVPRREEL 724

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G +P+      + G GLNL    + +V F  WW+     Q  +R       + G
Sbjct: 725 VARFQAGAVPVFLLSLKAAGTGLNLTR-ADHVVHFDRWWNPAVEDQATDR-----AYRIG 778

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             R V V+ L+A+ T+++ +   LR K  + + +L   + 
Sbjct: 779 QTRPVQVHRLVAEGTVEDRIAAMLREKRALAEAVLAGGEA 818


>gi|148360611|ref|YP_001251818.1| SNF2/RAD54 family transporter domain-containing protein [Legionella
            pneumophila str. Corby]
 gi|148282384|gb|ABQ56472.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila str. Corby]
          Length = 1088

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             E         K+ AL  +++        ++V   F S L  +++             G+
Sbjct: 911  SEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIARQYDYLKLTGQ 970

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T ++    ++++ +G  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 971  TQNRQ-ALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNPSVEDQATDR-- 1026

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +  VFVY LI   T++E +L     K  + + +L+
Sbjct: 1027 ---THRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILS 1067


>gi|154488684|ref|ZP_02029533.1| hypothetical protein BIFADO_01991 [Bifidobacterium adolescentis
            L2-32]
 gi|154082821|gb|EDN81866.1| hypothetical protein BIFADO_01991 [Bifidobacterium adolescentis
            L2-32]
          Length = 1272

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 30/223 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L   +   FN+      ++     ++      VY D +         
Sbjct: 1050 KLYAAHEQRLRATLTKASDADFNTKKIRILAEFTLLREICCDPRLVYADAKN-----ASA 1104

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQ 102
            K+ A+  ++         ++V   F S L  +         +     G T   +    + 
Sbjct: 1105 KLDAIAELVATCMGEGKKVLVFSQFTSFLELIGARLAEQGVEYYTITGETPKKRRVELVD 1164

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   +P+      +   GLNL  G +++V    WW+     Q  +R       + G  
Sbjct: 1165 EFNGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQNQATDR-----AHRIGQT 1218

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY ++A++TI+E +L+    K+ +     +      +  
Sbjct: 1219 QDVNVYQIVAKDTIEERILKLQEKKNELARQFTDGTASGGVGT 1261


>gi|149198233|ref|ZP_01875280.1| swf/snf family helicase [Lentisphaera araneosa HTCC2155]
 gi|149138835|gb|EDM27241.1| swf/snf family helicase [Lentisphaera araneosa HTCC2155]
          Length = 1308

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 21/192 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIV 73
             G+  + F    +  +  Q A      D++         K+K    ++++        +V
Sbjct: 1107 GGDRNDKFFILEEITRLRQAACSPSLLDKQ---FSDQSAKLKRFIELVKELKEAGHRALV 1163

Query: 74   AYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
               F S L  ++KA  +               K P  ++++  GK  +      + G GL
Sbjct: 1164 FSQFTSFLDLVEKALAEEDVDFLRLDGSTPAKKRPQLVKKFQVGKSSVFLISLKAGGFGL 1223

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    N ++    WW+     Q  +R       + G ++AV VY LI++ TI+E +L+ 
Sbjct: 1224 NLT-AANYVIHLDPWWNPAVEDQATDR-----AHRIGQEKAVTVYRLISEGTIEEKILKL 1277

Query: 184  LRTKSTIQDLLL 195
              +K  + D +L
Sbjct: 1278 HESKRELADFML 1289


>gi|289434930|ref|YP_003464802.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171174|emb|CBH27716.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1071

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   +++   F   LA +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E + +  + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFELQKKKQALVDELIQ 1045


>gi|307609532|emb|CBW99030.1| hypothetical protein LPW_08151 [Legionella pneumophila 130b]
          Length = 1088

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             E         K+ AL  +++        ++V   F S L  +++             G+
Sbjct: 911  SEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIARQYDYLKLTGQ 970

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T ++    ++++ +G  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 971  TQNRQ-ALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNPSVEDQATDR-- 1026

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +  VFVY LI   T++E +L     K  + + +L+
Sbjct: 1027 ---THRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILS 1067


>gi|296106323|ref|YP_003618023.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila 2300/99 Alcoy]
 gi|295648224|gb|ADG24071.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila 2300/99 Alcoy]
          Length = 1088

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             E         K+ AL  +++        ++V   F S L  +++             G+
Sbjct: 911  SEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIARQYDYLKLTGQ 970

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T ++    ++++ +G  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 971  TQNRQ-ALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNPSVEDQATDR-- 1026

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +  VFVY LI   T++E +L     K  + + +L+
Sbjct: 1027 ---THRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILS 1067


>gi|52840972|ref|YP_094771.1| DNA helicase SNF2/RAD54 family protein [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|54296762|ref|YP_123131.1| hypothetical protein lpp0801 [Legionella pneumophila str. Paris]
 gi|52628083|gb|AAU26824.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750547|emb|CAH11949.1| hypothetical protein lpp0801 [Legionella pneumophila str. Paris]
          Length = 1088

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 18/164 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             E         K+ AL  +++        ++V   F S L  +++             G+
Sbjct: 911  SEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIVRQYDYLKLTGQ 970

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T ++    + ++ +G  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 971  TQNRQ-ALVDQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNPSVEDQATDR-- 1026

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +  VFVY LI   T++E +L     K  + + +L+
Sbjct: 1027 ---THRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILS 1067


>gi|47096999|ref|ZP_00234573.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|254898188|ref|ZP_05258112.1| hypothetical protein LmonJ_00195 [Listeria monocytogenes J0161]
 gi|254912319|ref|ZP_05262331.1| helicase [Listeria monocytogenes J2818]
 gi|254936646|ref|ZP_05268343.1| helicase [Listeria monocytogenes F6900]
 gi|47014621|gb|EAL05580.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|258609243|gb|EEW21851.1| helicase [Listeria monocytogenes F6900]
 gi|293590301|gb|EFF98635.1| helicase [Listeria monocytogenes J2818]
          Length = 1072

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E + +  + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFELQKKKQALVDELIQ 1045


>gi|294499255|ref|YP_003562955.1| SNF2 helicase family protein [Bacillus megaterium QM B1551]
 gi|294349192|gb|ADE69521.1| SNF2 helicase family protein [Bacillus megaterium QM B1551]
          Length = 1068

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E +  K++ L  I   A  N   +++   F S L  
Sbjct: 875  LAGLTRLRQICCHPSLFVEN---YEGYSSKLEQLLEITRSAVANGKRLLIFSQFTSMLHI 931

Query: 84   LQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++   +         G+T  K+       +N G+  +      + G GLNL  G + ++
Sbjct: 932  IREELQKDNLSYFYLDGQTPSKERVEMADRFNNGEQDIFLISLKAGGTGLNLT-GADTVI 990

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q   R       + G K  V V  LI+Q TI+E +    + K  + + 
Sbjct: 991  LYDLWWNPAIEEQAAGR-----AHRIGQKNVVQVIKLISQGTIEEKIYGLQQKKKELIEQ 1045

Query: 194  LLN 196
            ++ 
Sbjct: 1046 VIQ 1048


>gi|291563034|emb|CBL41850.1| Superfamily II DNA/RNA helicases, SNF2 family [butyrate-producing
            bacterium SS3/4]
          Length = 1068

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 21/182 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR 83
             ++ ++  Q+        +     +    K+     ++    +    I++   F S L  
Sbjct: 873  LAELMRLRQICCEPSLCFDG---YKGGSAKLDTCMELLLNGTSAGHKILLFSQFTSMLEI 929

Query: 84   LQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + K   +         G T  +D       + +  + +      + G GLNL    ++++
Sbjct: 930  IAKRLKKEKIPFYLLTGSTPKRDRVQMASSFQKDDVMVFLISLKAGGTGLNLT-AADVVI 988

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             +  WW++    Q  +R       + G +  V V+ LI ++TI+E +L+    K  + D 
Sbjct: 989  HYDPWWNVAAQNQATDR-----AHRIGQENQVSVFKLITKHTIEENILKLQEMKRDLADT 1043

Query: 194  LL 195
            ++
Sbjct: 1044 VV 1045


>gi|304315749|ref|YP_003850894.1| SNF2-related protein [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
 gi|302777251|gb|ADL67810.1| SNF2-related protein [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
          Length = 1065

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 21/182 (11%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL 84
            +   +  Q+      + E     +    K++ L  +I++        ++   F + L  +
Sbjct: 873  TALTRLRQICCHPSMFVEN---YKGTSGKMELLMELIQELKESGHRALIFSQFTTALKLI 929

Query: 85   QKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +    + +             +    ++ +NEG   +      + G GLNL  G + ++ 
Sbjct: 930  EDNLKKEKISYLYLDGDTKTKERGELVKAFNEGDSDVFLISLKAGGTGLNL-VGADTVIH 988

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F  WW+     Q  +R       + G    V V  LI Q TI+E +++    K  + + +
Sbjct: 989  FDPWWNPAIEDQATDR-----AHRIGQVNTVQVIKLITQGTIEEKIVKLQERKKEMINSV 1043

Query: 195  LN 196
            +N
Sbjct: 1044 IN 1045


>gi|54293719|ref|YP_126134.1| hypothetical protein lpl0772 [Legionella pneumophila str. Lens]
 gi|53753551|emb|CAH15006.1| hypothetical protein lpl0772 [Legionella pneumophila str. Lens]
          Length = 1088

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 18/164 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             E         K+ AL  +++        ++V   F S L  +++             G+
Sbjct: 911  SEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIVRQYDYLKLTGQ 970

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T ++    + ++ +G  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 971  TQNRQ-ALVDQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNPSVEDQATDR-- 1026

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +  VFVY LI   T++E +L     K  + + +L+
Sbjct: 1027 ---THRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILS 1067


>gi|254832046|ref|ZP_05236701.1| hypothetical protein Lmon1_11855 [Listeria monocytogenes 10403S]
          Length = 1072

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E + +  + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFELQKKKQALVDELIQ 1045


>gi|159028978|emb|CAO87439.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1390

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R     L   +  A        ++ +K  +          +    ++   K+   
Sbjct: 1171 YEALRRRALEKLSESDSTAGAKHLQVLAEIMKLRRACCHPQLVAPD---LDLAGSKLSRF 1227

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEG 107
              I+++   N    +V   F   LA ++    Q +   +              ++ +  G
Sbjct: 1228 AEILDELLDNQHKALVFSQFVDHLAIVRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQAG 1287

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+     Q  +R       + G KR V +
Sbjct: 1288 EGDVFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQKRPVTI 1341

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E ++     K  + D LL  
Sbjct: 1342 YRLVAKDTIEEKIVDLHHHKRDLADSLLEG 1371


>gi|284802036|ref|YP_003413901.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284995178|ref|YP_003416946.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
 gi|284057598|gb|ADB68539.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284060645|gb|ADB71584.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
          Length = 1072

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E + +  + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFELQKKKQALVDELIQ 1045


>gi|16803684|ref|NP_465169.1| hypothetical protein lmo1644 [Listeria monocytogenes EGD-e]
 gi|16411080|emb|CAC99722.1| lmo1644 [Listeria monocytogenes EGD-e]
          Length = 1072

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E + +  + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFELQKKKQALVDELIQ 1045


>gi|262377834|ref|ZP_06071049.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262307224|gb|EEY88372.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 1115

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +  +  ++Q    E              +K  Q+         +     + +  
Sbjct: 889  KLYEAVRATMQANIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKTGQAYSA 948

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
            K++ L  ++         I++   F S L  +++             G+T  +D   I  
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQQLYHAEIGYVKLTGKTKKRDE-VITA 1007

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G++P+      + G GLNL    + ++ +  WW+     Q  +R       + G  +
Sbjct: 1008 FQSGQVPVFLISLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQASDRAW-----RIGQDK 1061

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VFVY LI   +I+E ++   + K+ +   +L+
Sbjct: 1062 PVFVYKLITNKSIEEKIIALQQNKAELAQSILS 1094


>gi|158341292|ref|YP_001522344.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
 gi|158311533|gb|ABW33144.1| helicase, SNF2 family [Acaryochloris marina MBIC11017]
          Length = 1406

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            +  Y   +++    L   +  +        ++ ++  +          E     +   K+
Sbjct: 1184 LAFYEALRQDALAKLNESDAASGPKHIQVLAELMRLRRACCNPRLVLPETD---LPSAKL 1240

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW 104
            +    ++ +   N    +V   F   L  +++   + +                  +  +
Sbjct: 1241 QLFAEVLNELLDNKHKALVFSQFVDHLEIIRRYLDEQQIQYQYLDGSTPAKNRHKRVDAF 1300

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1301 QAGEGEIFLISLKAGGTGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQQRP 1354

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+A+ TI+E +++    K  + D LL  
Sbjct: 1355 VTIYRLVAKGTIEEKIVELHNQKRDLADSLLEG 1387


>gi|327183628|gb|AEA32075.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1118]
          Length = 1179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++ +      F   ++  K  ++        +  H K    +K+K
Sbjct: 958  LYHLQMNKIIAQLNGQDDDDFKKFRFQILAQITKLREICCDPHLLYDNYHGK---SDKLK 1014

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            A   +I+    N   I++   F S L  LQ+   + +            +K    IQ +N
Sbjct: 1015 ATIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1074

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++    Q  +R       + G K +
Sbjct: 1075 SLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRIGQKNS 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ Q+TI+E +++  + K+ +   +LN
Sbjct: 1129 VKIYKMVTQDTIEERIIKLQQKKAELAQAILN 1160


>gi|315650300|ref|ZP_07903372.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487411|gb|EFU77721.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 449

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 86/209 (41%), Gaps = 21/209 (10%)

Query: 3   QYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y K +RE + +L G   +      +K ++  Q   G +  D  +  + V   K+ ALE 
Sbjct: 241 IYSKIKRESFAELDGGGKVTVTTVLTKLLRLQQFTGGFLVADGSEKAELVSKGKLNALEE 300

Query: 62  IIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
           II+         +++   F  ++  + +   + +           L+     ++++   +
Sbjct: 301 IIDDYVVDADKKLVIFARFRPEIDLIGQMLTKKKIKYGAIYGDVKLEDRGGIVKDFQTNE 360

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +  A   + G G+ L    +  V++S+ ++   + Q + RI      + G K     
Sbjct: 361 NTKVFLAQIDTAGLGITLT-AADTCVYYSVNFNYAAYTQSLARI-----HRIGQKNICTY 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +LI + T+DE +L+ L  K  +   +++
Sbjct: 415 IHLITEGTVDETILKALARKEDLAKTIVD 443


>gi|300743764|ref|ZP_07072784.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
 gi|300380125|gb|EFJ76688.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
          Length = 1318

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 6    KFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + +R+       D+       F S +      +LA  A   D +  +  V   K++ L  
Sbjct: 1101 QRERQKVLGLLEDMDKNRFTIFQSLTL---LRRLALDATLIDPD-EYAGVASAKLEYLVE 1156

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIP 110
             +     +   ++V   F   L  + +          +  G T ++ P  ++++ EG  P
Sbjct: 1157 HLPSLLGDGHRVLVFSQFTGYLRTIAERLQAEGIDYLYLDGTTRNR-PQVLKDFAEGTAP 1215

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +  +    WW+    QQ ++RI      + G +R V VY L
Sbjct: 1216 VFLISLKAGGFGLNLTEADHCFIM-DPWWNPAAEQQAVDRI-----HRLGQERDVHVYRL 1269

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A+ TI+E V+    +K+ + D ++N
Sbjct: 1270 VAEGTIEEKVMDLKASKAALFDAVVN 1295


>gi|15896547|ref|NP_349896.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026382|gb|AAK81236.1|AE007827_4 Superfamily II DNA/RNA helicases, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510706|gb|ADZ22342.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1077

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 23/194 (11%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R++  D      +    ++K    ++L N ++   +E H   V  +    L+ I 
Sbjct: 884  YITRLRQICLDPSVVMEDYTGGSAKINALIELLNHSI---DEGHKILVFSQFTSVLKNIA 940

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHG 122
            E            F     +++ ++  G    K+    +Q++NEG   +      + G G
Sbjct: 941  E-----------RFR--EEKIKYSYLDGSINSKNRMNMVQDFNEGNNSVFLISLKAGGTG 987

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+    +Q  +R       + G K  V V  L+A+ TI+E +++
Sbjct: 988  LNLT-SADVVIHFDPWWNPAVEEQATDR-----AHRIGQKNIVEVIKLVAKGTIEEKIIR 1041

Query: 183  RLRTKSTIQDLLLN 196
                K  + D LL+
Sbjct: 1042 LQEEKKRLVDSLLS 1055


>gi|226943215|ref|YP_002798288.1| helicase protein [Azotobacter vinelandii DJ]
 gi|226718142|gb|ACO77313.1| helicase protein [Azotobacter vinelandii DJ]
          Length = 872

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKD 97
           +     K+ AL  ++E+  A    +++   F   L  + +             G T D+ 
Sbjct: 699 QAADSAKLSALLPMLEELSAEGRRVLLFSQFTGMLELIARELEARKIPYVQLTGATRDRR 758

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++E+  G++P+      + G GLNL    + ++ F  WW+     Q  +R       
Sbjct: 759 -TPVEEFQAGRVPVFLISLKAGGAGLNLT-AADTVIHFDPWWNPAAEAQASDR-----AY 811

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  + VFVY LIA+ +++E +    + K+ +   LL  
Sbjct: 812 RIGQDKPVFVYRLIARGSVEEKIQHLQKAKAELAHGLLEG 851


>gi|313608461|gb|EFR84385.1| SNF2 family helicase [Listeria monocytogenes FSL F2-208]
          Length = 966

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 741 LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 797

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
             I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 798 DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 857

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 858 NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 911

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +I + TI+E +    + K  + D L+ 
Sbjct: 912 RMITKGTIEERIFDLQKKKQALVDELIQ 939


>gi|47093680|ref|ZP_00231434.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|47017941|gb|EAL08720.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|328465005|gb|EGF36284.1| SNF2 family helicase [Listeria monocytogenes 1816]
          Length = 1072

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|323705524|ref|ZP_08117098.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535001|gb|EGB24778.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1065

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 21/182 (11%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL 84
            +   +  Q+      + E     +    K++ L  +I++        ++   F + L  +
Sbjct: 873  TALTRLRQICCHPSMFVEN---YKGTSGKMELLMELIQELKESGHRALIFSQFTTALKLI 929

Query: 85   QKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +    + +             +    ++ +N+G   +      + G GLNL  G + ++ 
Sbjct: 930  EDNLKKEKISYLYLDGDTKTKERGELVKAFNKGDSDVFLISLKAGGTGLNL-IGADTVIH 988

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F  WW+     Q  +R       + G    V V  LI Q TI+E +++    K  + + +
Sbjct: 989  FDPWWNPAIEDQATDR-----AHRIGQVNTVQVIKLITQGTIEEKIVKLQEKKKEMINSV 1043

Query: 195  LN 196
            +N
Sbjct: 1044 IN 1045


>gi|309388673|gb|ADO76553.1| SNF2-related protein [Halanaerobium praevalens DSM 2228]
          Length = 1082

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            N  +   K  Q+ N        +     +  K++AL+ ++  A      IIV   F   L
Sbjct: 881  NILAALTKLRQICNHPALI-LGEKASTYNSGKLEALKELLADALSGGHKIIVFSQFVKML 939

Query: 82   ARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++    Q         G T  +     +  N  ++ +      + G GLNL    +++
Sbjct: 940  KLIRSELDQQGLNYLYLDGSTRKRMQKVKEFNNNCEVKIFLISLKAGGVGLNLT-AADMV 998

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V    WW+      M+ER    R  + G +  V VY LI + T++E +L+    K  + +
Sbjct: 999  VHVDPWWN-----PMVERQATDRAHRLGQQNRVMVYKLITRGTVEEKMLKLQERKQDLFN 1053

Query: 193  LLLN 196
             ++ 
Sbjct: 1054 NVIE 1057


>gi|237733335|ref|ZP_04563816.1| SWF/SNF family helicase [Mollicutes bacterium D7]
 gi|229383547|gb|EEO33638.1| SWF/SNF family helicase [Coprobacillus sp. D7]
          Length = 1068

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
            +   EL   L  E I+     +   +  Q+   A + Y+E          K+KA   II+
Sbjct: 851  QINSELKTALDVERIDKIQILAMMTRLRQICCDARILYNE----IIGPSSKMKACLDIIK 906

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLL 112
            KA  N   +++   F S L  L+K   +   L           K    +  +      + 
Sbjct: 907  KAKENNQKVLLFSSFTSSLDLLEKELRKEDILYYVLTGATNKIKRHQLVNAFQNDNTDVF 966

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +I++ F  WW++    Q  +R       + G    V VY LI 
Sbjct: 967  LISLKAGGTGLNLT-AASIVIHFDPWWNMSAQNQATDR-----AYRIGQTNNVQVYKLIM 1020

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +N+I+E + +    K  + ++ + 
Sbjct: 1021 KNSIEEKIQELQAQKQDLSNIFIE 1044


>gi|291449545|ref|ZP_06588935.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291352492|gb|EFE79396.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 946

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 27/216 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCL----QLANG-AVYYDEEKHWKEVHDEKIK 57
            Y    RE   ++     + F      +K L    Q+ N  A +  EE+        K++
Sbjct: 719 LYEAVVRETLAEISA--ADGFERRGLVMKLLTSLKQICNHPAQFLKEEQPRIADRSGKVE 776

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEW 104
            L+ +++   A    ++V   +    ARL +     R +D           +    +  +
Sbjct: 777 LLDELLDTILAERGSVLVFTQYVQM-ARLLEEHLAARGVDTQFLHGGTPVARREEMVARF 835

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+ P+      + G GLNL   G+ +V F  WW+     Q  +R       + G  + 
Sbjct: 836 QSGEAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEAQATDR-----AYRIGQTQP 889

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V V+ LIA+ TI++ +   L  K  + D +L + + 
Sbjct: 890 VQVHRLIAEGTIEDRIAGMLARKQGLADAVLGSGEA 925


>gi|226224245|ref|YP_002758352.1| SNF2-type helicase [Listeria monocytogenes Clip81459]
 gi|225876707|emb|CAS05416.1| Putative SNF2-type helicase [Listeria monocytogenes serotype 4b str.
            CLIP 80459]
          Length = 1072

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|46907873|ref|YP_014262.1| SNF2 family helicase [Listeria monocytogenes str. 4b F2365]
 gi|254931583|ref|ZP_05264942.1| helicase [Listeria monocytogenes HPB2262]
 gi|46881142|gb|AAT04439.1| helicase, Snf2 family [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583138|gb|EFF95170.1| helicase [Listeria monocytogenes HPB2262]
          Length = 1072

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|227364978|ref|ZP_03849019.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|325681709|ref|ZP_08161229.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
 gi|227069989|gb|EEI08371.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|324979021|gb|EGC15968.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
          Length = 292

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 27/213 (12%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    + L   +Q +N E          ++  +  +L       D           KIK
Sbjct: 71  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRG---YSGPSGKIK 127

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWN 105
           A   +I  E A+   I++   F S LA L++            +G+T  +D    + E+N
Sbjct: 128 ATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVDEFN 187

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P +      + G GLNL    ++++ F  WW++    Q  +R       + G K  
Sbjct: 188 SYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQKNN 241

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 242 VTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 274


>gi|148544262|ref|YP_001271632.1| helicase domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|148531296|gb|ABQ83295.1| helicase domain protein [Lactobacillus reuteri DSM 20016]
          Length = 291

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 27/213 (12%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    + L   +Q +N E          ++  +  +L       D           KIK
Sbjct: 70  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRG---YSGPSGKIK 126

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWN 105
           A   +I  E A+   I++   F S LA L++            +G+T  +D    + E+N
Sbjct: 127 ATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVDEFN 186

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P +      + G GLNL    ++++ F  WW++    Q  +R       + G K  
Sbjct: 187 SYDQPAVFLISLKAGGTGLNLT-SADVVIHFDPWWNIAAENQATDR-----AHRIGQKNN 240

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 241 VTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 273


>gi|313632979|gb|EFR99905.1| DNA/RNA helicase protein [Listeria seeligeri FSL N1-067]
          Length = 1071

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   +++   F   LA +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|307822478|ref|ZP_07652709.1| SNF2-related protein [Methylobacter tundripaludum SV96]
 gi|307736082|gb|EFO06928.1| SNF2-related protein [Methylobacter tundripaludum SV96]
          Length = 1083

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 18/189 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
                  +K  Q          ++  K     K+  L  ++ +       I+V   F   +
Sbjct: 885  TILDALLKLRQTCCDPRTLSLKEAQKVQESAKLDLLMELLPEQLEEGRRILVFSQFTRMI 944

Query: 82   ARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++              G+T ++D   I+ +  G++ +      + G GLNL    + +
Sbjct: 945  GLIENELNDMKIGYAKLTGQTRNRDEA-IERFKSGEVNVFLISLKAGGVGLNLTE-ADTV 1002

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + +  WW+     Q  +R       + G  + VFVY LI +NT++E ++     K  + +
Sbjct: 1003 IIYDPWWNPAAESQAADR-----AHRIGQDKPVFVYKLITENTVEEKIIAMQDKKRALAE 1057

Query: 193  LLLNALKKE 201
             +     KE
Sbjct: 1058 GIYKGGAKE 1066


>gi|119025981|ref|YP_909826.1| helicase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765565|dbj|BAF39744.1| possible helicase [Bifidobacterium adolescentis ATCC 15703]
          Length = 1279

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 30/223 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L   +   FN+      ++     ++      VY D +         
Sbjct: 1057 KLYAAHEQRLRATLTKASDADFNTKKIRILAEFTLLREICCDPRLVYADAKN-----ASA 1111

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQ 102
            K+ A+  ++         ++V   F S L  +         +     G T   +    + 
Sbjct: 1112 KLDAIVELVATCMDEGKKVLVFSQFTSFLELIGARLAEQGVEYYTITGETPKKRRVELVD 1171

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   +P+      +   GLNL  G +++V    WW+     Q  +R       + G  
Sbjct: 1172 EFNGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQNQATDR-----AHRIGQT 1225

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY ++A++TI+E +L+    K+ +     +      +  
Sbjct: 1226 QDVNVYQIVAKDTIEERILKLQEKKNELARQFTDGTASGGVGT 1268


>gi|237749385|ref|ZP_04579865.1| helicase [Oxalobacter formigenes OXCC13]
 gi|229380747|gb|EEO30838.1| helicase [Oxalobacter formigenes OXCC13]
          Length = 1125

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 18/188 (9%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ- 85
             +K  Q+                   K+  L  ++++       I+V   F S L+ ++ 
Sbjct: 925  LLKLRQVCCDPRLLRGSAKKANTSSAKLNELMEMLDELLLEKRHILVFSQFTSMLSLIET 984

Query: 86   --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                         G T D+    I+ + +GK+ +      + G GLNL    + ++ +  
Sbjct: 985  ELKNRSIPYEILTGDTTDRASA-IRNFQDGKVSVFLISLKAGGVGLNLT-AADTVIHYDP 1042

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G  + VFVY LIA+ T++E + +  + K+ +   +L++
Sbjct: 1043 WWNPAVENQATDRAW-----RIGQDKPVFVYKLIAKGTLEEKIQELQQRKADLATAMLSS 1097

Query: 198  LKKETIHV 205
             + + + +
Sbjct: 1098 GQAQHVQI 1105


>gi|217964204|ref|YP_002349882.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|217333474|gb|ACK39268.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|307571229|emb|CAR84408.1| helicase, Snf2 family [Listeria monocytogenes L99]
          Length = 1072

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|254852266|ref|ZP_05241614.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300766136|ref|ZP_07076102.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
 gi|258605574|gb|EEW18182.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300513159|gb|EFK40240.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
          Length = 1072

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|254824296|ref|ZP_05229297.1| helicase [Listeria monocytogenes FSL J1-194]
 gi|255520940|ref|ZP_05388177.1| hypothetical protein LmonocFSL_06916 [Listeria monocytogenes FSL
            J1-175]
 gi|293593530|gb|EFG01291.1| helicase [Listeria monocytogenes FSL J1-194]
          Length = 1072

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|262193501|ref|YP_003264710.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262076848|gb|ACY12817.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 777

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 16/185 (8%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN 78
            A       +K  Q+             +     K      ++   +     I+V   F 
Sbjct: 576 SAIAILDALMKLRQVCCDPRLVTVPSARRVKESAKYALFFDLLSTQREQGRRILVFSQFT 635

Query: 79  SDLARLQKAFPQGRTLDK--------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           S LA L +   +                  + E+ EG+  +      + G GLNL    +
Sbjct: 636 SMLALLSQGLEERGVAHSVLTGATANRQRAVDEFQEGRTEVFLISLKAGGTGLNLTR-AD 694

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +V +  WW+     Q  +R       + G  R VFVY LI   +++E +L   + K  +
Sbjct: 695 TVVHYDPWWNPAAQAQATDR-----AYRIGQTRPVFVYNLITAGSVEERMLALQQRKRHL 749

Query: 191 QDLLL 195
            D +L
Sbjct: 750 ADTIL 754


>gi|311113008|ref|YP_003984230.1| hypothetical protein HMPREF0733_11339 [Rothia dentocariosa ATCC
            17931]
 gi|310944502|gb|ADP40796.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 1319

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 6    KFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + +R+       D+       F S +      +LA  A   D +  +  V   K++ L  
Sbjct: 1102 QRERQKVLGLLDDMDKNRFTIFQSLTL---LRRLALDATLIDPD-EYAGVASAKLEYLVE 1157

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIP 110
             +     +   ++V   F   L  + +          +  G T ++ P  ++++ EG  P
Sbjct: 1158 HLPSLLGDGHRVLVFSQFTGYLRTIAERLQAEGIDYLYLDGTTRNR-PQVLKDFAEGAAP 1216

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +  +    WW+    QQ ++RI      + G +R V VY L
Sbjct: 1217 VFLISLKAGGFGLNLTEADHCFIM-DPWWNPAAEQQAVDRI-----HRLGQERDVHVYRL 1270

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A+ TI+E V+    +K+ + D ++N
Sbjct: 1271 VAEGTIEEKVMDLKASKAALFDAVVN 1296


>gi|228938966|ref|ZP_04101566.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|228971848|ref|ZP_04132469.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228978456|ref|ZP_04138833.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228781473|gb|EEM29674.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228787938|gb|EEM35896.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228820815|gb|EEM66840.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|326939468|gb|AEA15364.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1064

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|169349519|ref|ZP_02866457.1| hypothetical protein CLOSPI_00240 [Clostridium spiroforme DSM 1552]
 gi|169293594|gb|EDS75727.1| hypothetical protein CLOSPI_00240 [Clostridium spiroforme DSM 1552]
          Length = 1064

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 25/196 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            L  E I+ F   S   +  QL      +Y D      +    K+KA   II+KA  N   
Sbjct: 859  LDIEQIDKFQILSMMTRLRQLCCEPRILYND-----IQEPSSKMKACLDIIKKAKENKQK 913

Query: 71   IIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +++   F S L  ++K   +               K    +  +      +      + G
Sbjct: 914  VLLFSSFTSSLEFIEKELRKDDISYYVLTGATNKIKRHQLVNAFQNDNTNVFLISLKAGG 973

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    +I++ +  WW++    Q  +R       + G    V VY LI +N+I+E +
Sbjct: 974  TGLNLT-AASIVIHYDPWWNMSAQNQATDR-----AYRIGQVNNVQVYKLIMKNSIEEKI 1027

Query: 181  LQRLRTKSTIQDLLLN 196
             +    K  + ++ + 
Sbjct: 1028 QKLQEQKQDLSNIFIE 1043


>gi|167756157|ref|ZP_02428284.1| hypothetical protein CLORAM_01680 [Clostridium ramosum DSM 1402]
 gi|167704149|gb|EDS18728.1| hypothetical protein CLORAM_01680 [Clostridium ramosum DSM 1402]
          Length = 1068

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
            +   EL   L  E I+     +   +  Q+   A + Y+E          K+KA   II+
Sbjct: 851  QINSELKTALDVERIDKIQILAMMTRLRQICCDARILYNE----IIGPSSKMKACLDIIK 906

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL 112
            KA  N   +++   F S L  L+K   +               K    +  +      + 
Sbjct: 907  KAKENNQKVLLFSSFTSSLDLLEKELRKEDISYYVLTGATNKIKRHQLVNAFQNDNTDVF 966

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +I++ F  WW++    Q  +R       + G    V VY LI 
Sbjct: 967  LISLKAGGTGLNLT-AASIVIHFDPWWNMSAQNQATDR-----AYRIGQTNNVQVYKLIM 1020

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +N+I+E + +    K  + ++ + 
Sbjct: 1021 KNSIEEKIQELQAQKQDLSNIFIE 1044


>gi|229043607|ref|ZP_04191314.1| Helicase, SWF/SNF [Bacillus cereus AH676]
 gi|228725682|gb|EEL76932.1| Helicase, SWF/SNF [Bacillus cereus AH676]
          Length = 1064

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|281357099|ref|ZP_06243589.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
 gi|281316657|gb|EFB00681.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
          Length = 1041

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDL----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y K ++E    L    +G+        +  ++  Q+        + K    +   K   
Sbjct: 821  LYEKVRKEGLAQLAKYKEGDARGNATVFTTLLRLRQICCHPALLPDGKGD-GIPSAKTDL 879

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEG 107
            L  ++ +   +   +++   F S LA          +   +  G T ++        N  
Sbjct: 880  LFELLHENIDSNHKMLLFSQFTSLLALTVKELNAEGIPFEYLDGSTRNRQERVDHFNNSP 939

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +IPL      + G GLNL    + ++ +  WW+     Q  +R       + G  RAV  
Sbjct: 940  EIPLFLLSLKAGGTGLNLT-SADTVIIYDPWWNPAVELQAADR-----THRIGQTRAVSS 993

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              L+ +++I+E +L+    K  I D +++
Sbjct: 994  VKLVVKDSIEEKILELQERKREIFDSVID 1022


>gi|218233639|ref|YP_002366534.1| putative helicase [Bacillus cereus B4264]
 gi|218161596|gb|ACK61588.1| putative helicase [Bacillus cereus B4264]
          Length = 1064

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|288917855|ref|ZP_06412216.1| SNF2-related protein [Frankia sp. EUN1f]
 gi|288350783|gb|EFC84999.1| SNF2-related protein [Frankia sp. EUN1f]
          Length = 1198

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R+    L G+ N   F          QL+  A   D+E    +    KI 
Sbjct: 979  RIYQTHLQRERQKILGLIGDLNRNRFTILRSLTALRQLSLHAGLVDDEHD--DTPSAKID 1036

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
             L   +          +V   F   L R         ++  +  G T D+    ++ + E
Sbjct: 1037 VLLEQLRDVADGGHRALVFSQFTRFLGRVRETLTAAGIEHCYLDGSTRDRAG-VLRRFKE 1095

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    +       WW+     Q ++R       + G  R V 
Sbjct: 1096 GSAPVFLISLKAGGSGLNLTE-ADYCFLLDPWWNPATEAQAVDR-----THRIGQSRNVM 1149

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A++TI+E V+     K+ +   ++++
Sbjct: 1150 VYRLVARDTIEEKVMALKARKAELFSGVMDS 1180


>gi|224282308|ref|ZP_03645630.1| helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139453|ref|ZP_07801646.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
 gi|313131963|gb|EFR49580.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 1339

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 32/216 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKA 58
            R++ CD +     A   AS     +Q A      D ++  K+          V   K+ A
Sbjct: 1117 RQVCCDPRLIYENADGHASALSAGVQSAA----KDPQQSVKQPVKQSKARKTVSSAKLDA 1172

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
            +  +++        +++   F S L  + +                   +    +  +N 
Sbjct: 1173 IIELVDSCRDAGRKMLIFSQFTSYLDLIAQRLRADGVEYDMITGATPKKRRLELVDRFNA 1232

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P+      +   GLNL  G  ++V    WW+     Q  +R       + G  + V 
Sbjct: 1233 DATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQATDR-----AHRIGQTQDVN 1286

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1287 VYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|291455433|ref|ZP_06594823.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
 gi|291358382|gb|EFE85284.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 958

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    +   +                Q+ N  A Y  E++        K++ L
Sbjct: 731 LYEAVVRETLAAVAAADGMERRGLIVQLLTSLKQICNHPAQYLKEDRPRVGGRSGKVELL 790

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRT-LDKDPCTIQEWNEG 107
           + +++   A  A +++   +      L++          F  G+T +      ++ + +G
Sbjct: 791 DELLDTILAEGAGVLLFTQYVRMGRLLERHLAARGVATQFLHGQTPIPAREEMVRRFQDG 850

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V    WW+     Q  +R       + G  R V V
Sbjct: 851 EVPVFLLSLKAAGTGLNLTRAEH-VVHVDRWWNPAVEAQATDR-----AYRIGQTRPVQV 904

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + ++ + TI++ + + L  K  + D +L   + 
Sbjct: 905 HRIVTEGTIEDRIAELLVRKQALADAVLTGGEA 937


>gi|239983620|ref|ZP_04706144.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 956

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    +   +                Q+ N  A Y  E++        K++ L
Sbjct: 729 LYEAVVRETLAAVAAADGMERRGLIVQLLTSLKQICNHPAQYLKEDRPRVGGRSGKVELL 788

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRT-LDKDPCTIQEWNEG 107
           + +++   A  A +++   +      L++          F  G+T +      ++ + +G
Sbjct: 789 DELLDTILAEGAGVLLFTQYVRMGRLLERHLAARGVATQFLHGQTPIPAREEMVRRFQDG 848

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V    WW+     Q  +R       + G  R V V
Sbjct: 849 EVPVFLLSLKAAGTGLNLTRAEH-VVHVDRWWNPAVEAQATDR-----AYRIGQTRPVQV 902

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + ++ + TI++ + + L  K  + D +L   + 
Sbjct: 903 HRIVTEGTIEDRIAELLVRKQALADAVLTGGEA 935


>gi|84495493|ref|ZP_00994612.1| SNF2-like [Janibacter sp. HTCC2649]
 gi|84384986|gb|EAQ00866.1| SNF2-like [Janibacter sp. HTCC2649]
          Length = 1099

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE-KANA 68
            L  DL G  I    + +      Q+A      D E +       K++AL E + E  A  
Sbjct: 893  LIDDLDGNRIAILRALTV---LRQMALDPSLVDAEAYGGVAPSAKVEALVEQVAELAAEG 949

Query: 69   APIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
               +V   F S L           +  A+  G T ++    ++E+ EG+ P+      + 
Sbjct: 950  HRALVFSQFTSFLSIVRDRLEEEGIAYAYLDGSTRNR-ADVVKEFREGEAPVFLISLKAG 1008

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GL L     + V    WW+     Q I+R       + G  ++V VY L++ +TI+E 
Sbjct: 1009 GFGLTLTEADYVFVL-DPWWNPAAENQAIDR-----AHRIGQTKSVNVYRLVSTDTIEEK 1062

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   +++
Sbjct: 1063 VVALQDKKRDLFARVVD 1079


>gi|254829448|ref|ZP_05234135.1| helicase [Listeria monocytogenes FSL N3-165]
 gi|258601864|gb|EEW15189.1| helicase [Listeria monocytogenes FSL N3-165]
          Length = 1072

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +I + TI+E +    + K  + D L+ 
Sbjct: 1018 RMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|325956842|ref|YP_004292254.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
 gi|325333407|gb|ADZ07315.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
          Length = 1179

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++ +      F   ++  K  ++        +  H K    +K+K
Sbjct: 958  LYHLQMNKIIAQLNGQDDDDFKKFRFQILAQITKLREICCDPHLLYDNYHGK---SDKLK 1014

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            A   +I+    N   I++   F S L  LQ+   + +            +K    IQ +N
Sbjct: 1015 ATIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1074

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++    Q  +R       + G K +
Sbjct: 1075 SLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRIGQKNS 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ Q+T++E +++  + K+ +   +LN
Sbjct: 1129 VKIYKMVTQDTVEERIIKLQQKKAELAQAILN 1160


>gi|229144464|ref|ZP_04272868.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
 gi|228638999|gb|EEK95425.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
          Length = 1064

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229109309|ref|ZP_04238907.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
 gi|228674146|gb|EEL29392.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
          Length = 1064

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|238063663|ref|ZP_04608372.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
 gi|237885474|gb|EEP74302.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
          Length = 929

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAF---NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIK 57
             Y +   ++  +++                V   Q+ N  A Y  E         EK+ 
Sbjct: 701 ALYQRVVDDVLAEIRASTTSMARRGLVLKLLVGLKQVCNHPAHYLKEPHGRLTGRSEKLH 760

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            L+ ++E   A     +V   +      L++   +          G  + +    ++ + 
Sbjct: 761 LLDDLLETILAEEGGALVFTQYVQMARLLKRHLAERGVPAQLLHGGTPVPQREEMVRRFQ 820

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++P+      + G GLNL    + ++ F  WW+    +Q  +R       + G  + V
Sbjct: 821 AGEVPVFLLSLKAAGTGLNLTR-ADHVIHFDRWWNPAVEEQATDR-----AYRIGQTKPV 874

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LIAQ T+++ +   L +K  + D +L  
Sbjct: 875 QVHRLIAQGTLEDRIAALLESKRELADAVLTG 906


>gi|311063653|ref|YP_003970378.1| helicase [Bifidobacterium bifidum PRL2010]
 gi|310865972|gb|ADP35341.1| Helicase [Bifidobacterium bifidum PRL2010]
          Length = 1339

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 32/216 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKA 58
            R++ CD +     A   AS     +Q A      D ++  K+          V   K+ A
Sbjct: 1117 RQVCCDPRLIYENADGHASALSAGVQSAA----KDPQQSVKQPVKQSKARKTVSSAKLDA 1172

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
            +  +++        +++   F S L  + +                   +    +  +N 
Sbjct: 1173 IIELVDSCRDAGRKMLIFSQFTSYLDLIAQRLRADGVEYDMITGATPKKRRLELVDRFNA 1232

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P+      +   GLNL  G  ++V    WW+     Q  +R       + G  + V 
Sbjct: 1233 DATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQATDR-----AHRIGQTQDVN 1286

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1287 VYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|310286756|ref|YP_003938014.1| helicase [Bifidobacterium bifidum S17]
 gi|309250692|gb|ADO52440.1| helicase [Bifidobacterium bifidum S17]
          Length = 1339

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 32/216 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKA 58
            R++ CD +     A   AS     +Q A      D ++  K+          V   K+ A
Sbjct: 1117 RQVCCDPRLIYENADGHASALSAGVQSAA----KDPQQSVKQPVKQSKARKTVSSAKLDA 1172

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
            +  +++        +++   F S L  + +                   +    +  +N 
Sbjct: 1173 IIELVDSCRDAGRKMLIFSQFTSYLDLIAQRLRADGVEYDMITGATPKKRRLELVDRFNA 1232

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P+      +   GLNL  G  ++V    WW+     Q  +R       + G  + V 
Sbjct: 1233 DATPVFLISLKAGNTGLNLT-GACVVVHADPWWNAAAQDQATDR-----AHRIGQTQDVN 1286

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            VY ++A++TI+E +L   R+K+ +    +++    T
Sbjct: 1287 VYQIVAKDTIEERILNLQRSKTDLAQRFVDSASSAT 1322


>gi|229150056|ref|ZP_04278279.1| Helicase, SWF/SNF [Bacillus cereus m1550]
 gi|228633355|gb|EEK89961.1| Helicase, SWF/SNF [Bacillus cereus m1550]
          Length = 1064

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|295704607|ref|YP_003597682.1| SNF2 helicase family protein [Bacillus megaterium DSM 319]
 gi|294802266|gb|ADF39332.1| SNF2 helicase family protein [Bacillus megaterium DSM 319]
          Length = 1068

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E +  K++ L  I   A  N   +++   F S L  
Sbjct: 875  LAGLTRLRQICCHPSLFVEN---YEGYSSKLEQLLEITRNAVANGKRLLIFSQFTSMLHI 931

Query: 84   LQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++   +         G+T  K+       +N G+  +      + G GLNL  G + ++
Sbjct: 932  IREELQKENLSYFYLDGQTPSKERVEMADRFNNGEQDIFLISLKAGGTGLNLT-GADTVI 990

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q   R       + G K  V V  LI+Q TI+E +    + K  + + 
Sbjct: 991  LYDLWWNPAIEEQAAGR-----AHRIGQKNVVQVIKLISQGTIEEKIYGLQQKKKELIEQ 1045

Query: 194  LLN 196
            ++ 
Sbjct: 1046 VIQ 1048


>gi|168217982|ref|ZP_02643607.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
 gi|182379962|gb|EDT77441.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
          Length = 1084

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      KI+AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKIEALVEILNQGIEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GTGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|297569291|ref|YP_003690635.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925206|gb|ADH86016.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1309

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Y   +R+    L+               ++ +K  +          +     +   K+
Sbjct: 1088 ALYEALRRQARATLKNGANRDRPGAPLQVLAEIMKLRRACCHPRLVLPDST---MPGAKL 1144

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEW 104
            + L  ++ +   N   I+V   F   LA +++           F            ++++
Sbjct: 1145 ELLTKVVAELLENRHRILVFSQFVDHLAIVRQYLDEQQISYQYFDGATPARVRQQRVRDF 1204

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  L      + G GLNL    + ++    WW+    +Q  +R       + G  + 
Sbjct: 1205 QAGRGKLFLISLRAGGLGLNLT-AADYVIHLDPWWNPAVEEQASDR-----AHRIGQDKP 1258

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V +Y LI   TI+E +L   + K  +   LL+A + 
Sbjct: 1259 VTIYRLITTGTIEEKILAMHQQKRHLAAELLDATRS 1294


>gi|229542960|ref|ZP_04432020.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
 gi|229327380|gb|EEN93055.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
          Length = 1081

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  QL      + E          K++ L  +   A  N   +++   F+S L  
Sbjct: 888  LAGLTRLRQLCCHPALFVEN---YRGESGKLEQLVELAHTAIENGKRLLIFSQFSSMLQL 944

Query: 84   LQKA---------FPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++           +  G+T  ++       +N G+  +      + G GLNL  G + +V
Sbjct: 945  IRTRLSDEGIDSFYLDGQTPSRERVEMADRFNSGEKNVFLISLKAGGTGLNLT-GADTVV 1003

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q   R       + G K  V V  LIA+ TI+E + +  + K  + + 
Sbjct: 1004 LYDLWWNPAVEEQAAGR-----AHRIGQKNVVQVIRLIARGTIEEKIYELQQKKKELIEK 1058

Query: 194  LLN 196
            ++ 
Sbjct: 1059 VIQ 1061


>gi|239918579|ref|YP_002958137.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
 gi|239839786|gb|ACS31583.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
          Length = 1143

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 30/213 (14%)

Query: 2    KQYHK-FQRE------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y +  QRE      L  D+ G     F S +       LA      D+   +  V   
Sbjct: 916  KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTL---LRMLALAPQIVDD--QYASVPSS 970

Query: 55   KIKA-LEVIIEK-ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQE 103
            K++  L+ + E       +IV   F S L           ++ A+  G T  +    I+ 
Sbjct: 971  KLERFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGR-ADVIRG 1029

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + EG+ P+      + G GL L    + +     WW+     Q ++R       + G +R
Sbjct: 1030 FREGEAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAAEAQAVDR-----AHRIGQER 1083

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V VY L+++ TI+E VL+    K+ +   L++
Sbjct: 1084 TVMVYRLVSEGTIEEKVLELQWRKAELFGALMD 1116


>gi|110801800|ref|YP_698913.1| Snf2/Rad54 family helicase [Clostridium perfringens SM101]
 gi|110682301|gb|ABG85671.1| helicase, SNF2/RAD54 family [Clostridium perfringens SM101]
          Length = 1084

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      KI+AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKIEALVEILNQGIEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GTGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|18310607|ref|NP_562541.1| helicase, SNF2/RAD54 family [Clostridium perfringens str. 13]
 gi|18145288|dbj|BAB81331.1| SWI/SNF family helicase [Clostridium perfringens str. 13]
          Length = 1084

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      KI+AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKIEALVEILNQGVEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GTGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|269216031|ref|ZP_06159885.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
 gi|269130290|gb|EEZ61368.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
          Length = 1078

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 28/211 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKI 56
            + + +  R        E  +        ++  +  Q+A     +Y D           K 
Sbjct: 858  QAHEQLLRTKIAHEGEEGDDGRSKVEILAELTRLRQIALDPSLLYAD-----YRGGGAKE 912

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQEW 104
            +A+   I    A+   ++V   F S L  +         +     G T   K    +  +
Sbjct: 913  QAIMDTIASCIASGEKVLVFSQFTSYLDIIGAKLSEQGVKHYVITGSTPKKKRLALVDAF 972

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P+      + G GLNL  G ++++    WW+     Q  +R       + G  R 
Sbjct: 973  NADDTPVFLISLKAGGTGLNLT-GASVVLHADPWWNAAAQNQATDR-----AHRMGQTRI 1026

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY +IA++TI+E +L+    KS + D ++
Sbjct: 1027 VNVYRVIAKDTIEERILKLQDAKSDLADRIV 1057


>gi|168207158|ref|ZP_02633163.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
 gi|170661452|gb|EDT14135.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
          Length = 1084

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      KI+AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKIEALVEILNQGIEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GTGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|152975221|ref|YP_001374738.1| non-specific serine/threonine protein kinase [Bacillus cereus subsp.
            cytotoxis NVH 391-98]
 gi|152023973|gb|ABS21743.1| Non-specific serine/threonine protein kinase [Bacillus cytotoxicus
            NVH 391-98]
          Length = 1066

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 851  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 906

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 907  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 966

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 967  LFLISLKAGGTGLNLT-GADTVILYDLWWNPSVEQQAADR-----AYRMGQKNTVQVIKL 1020

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A+ TI+E + +   +K  +   ++ 
Sbjct: 1021 VARGTIEEKIHELQESKKNLIAEVIE 1046


>gi|270157430|ref|ZP_06186087.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|289164177|ref|YP_003454315.1| DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
 gi|269989455|gb|EEZ95709.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|288857350|emb|CBJ11178.1| putative DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
          Length = 1091

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
             E         K++AL  ++         ++V   F S L  +++   + R  D      
Sbjct: 913  PEAAIAHGTSAKLEALMDLLNNLIGEGRRVLVFSQFTSMLQLIEEEL-RARHYDYLKLTG 971

Query: 96   ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                    + ++ EG  P+      + G GLNL    + ++ +  WW+     Q  +R  
Sbjct: 972  QTQHRQAMVDKFQEGNTPVFLISLKAGGTGLNLTR-ADTVIQYDPWWNPAVEAQATDR-- 1028

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETI 203
                 + G +  VFVY LI   T++E +L     K  + + +L  ++ K   +
Sbjct: 1029 ---AHRIGQENPVFVYKLITAGTVEEAILTMQEKKRLLGESVLSPDSTKATAL 1078


>gi|110800752|ref|YP_696312.1| Snf2/Rad54 family helicase [Clostridium perfringens ATCC 13124]
 gi|110675399|gb|ABG84386.1| helicase, SNF2/RAD54 family [Clostridium perfringens ATCC 13124]
          Length = 1084

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 14   DLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            D +  N       S   K  QLA + AV  ++          KI+AL  I+ +       
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLALDPAVTIND----YMGESAKIEALVEILNQGIEEGHK 926

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+V   F S L  +     + +             K    + E+NEG+  +      + G
Sbjct: 927  ILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAGG 986

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E V
Sbjct: 987  TGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEKV 1040

Query: 181  LQRLRTKSTIQDLLLN 196
            +     K  +   ++ 
Sbjct: 1041 VALQEEKKELISKIIE 1056


>gi|228907542|ref|ZP_04071399.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
 gi|228852034|gb|EEM96831.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
          Length = 1064

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|168209303|ref|ZP_02634928.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
 gi|170712526|gb|EDT24708.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
          Length = 1084

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 14   DLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            D +  N       S   K  QLA + AV  ++          KI+AL  I+ +       
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLALDPAVTIND----YMGESAKIEALVEILNQGIEEGHK 926

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+V   F S L  +     + +             K    + E+NEG+  +      + G
Sbjct: 927  ILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAGG 986

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E V
Sbjct: 987  TGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEKV 1040

Query: 181  LQRLRTKSTIQDLLLN 196
            +     K  +   ++ 
Sbjct: 1041 VALQEEKKELISKIIE 1056


>gi|120611497|ref|YP_971175.1| SNF2-like protein [Acidovorax citrulli AAC00-1]
 gi|120589961|gb|ABM33401.1| SNF2-related protein [Acidovorax citrulli AAC00-1]
          Length = 991

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+ +   +G  I   ++    +K  Q+               +   K+  L  ++ 
Sbjct: 746 RVLERQGF---EGGLITILDA---LLKLRQVCCDPRLVKGLPDASGMESAKLDRLAELLP 799

Query: 65  K--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPC-TIQEWN----EGK 108
              A    ++V   F   L          RL      G T  +     ++ +     EG 
Sbjct: 800 PLVAEGRRVLVFSQFTGMLDLAGQRLDALRLPWLALTGATAPRQRASVVRRFQDPSAEGS 859

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+L A   + G GLNL    + ++    WW+    +Q   R       + G  R VF++
Sbjct: 860 APILLASLKAGGTGLNLT-AADTVIHLDPWWNPAVMEQASAR-----AHRIGQDRPVFIH 913

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +L+A+ +I+E +L+    K  + D +L
Sbjct: 914 HLVAEGSIEERMLELQARKQALADGVL 940


>gi|228964841|ref|ZP_04125946.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794779|gb|EEM42280.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 1064

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229069404|ref|ZP_04202693.1| Helicase, SWF/SNF [Bacillus cereus F65185]
 gi|228713543|gb|EEL65429.1| Helicase, SWF/SNF [Bacillus cereus F65185]
          Length = 1064

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|282857036|ref|ZP_06266287.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
 gi|282585197|gb|EFB90514.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
          Length = 1419

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 32/215 (14%)

Query: 8    QRELYCDLQGENIEAFNSA-------------SKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +R  Y  L+   +EA ++A             ++ +K  +    AV    +     +   
Sbjct: 1192 ERAFYEALRQSAVEAIDAAGNSPEEDKRFAVFAQLMKLRRCCC-AVSLVSDGVGAAIPSS 1250

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K++AL  ++++   +    +V   F   L  +++A  +               K    + 
Sbjct: 1251 KLEALLELVDELRESGHRALVFSQFTDHLRLIERALAERGVPCLYLDGSTPPGKRAELVS 1310

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G+         + G GLNL  G + +V    WW+     Q  +R       + G  
Sbjct: 1311 SFQSGRGDCFLISLRAGGTGLNLT-GADFVVHMDPWWNPAVEDQASDR-----AYRIGQT 1364

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V VY  +A +T++E +++  R K  + + LL  
Sbjct: 1365 RPVTVYRFVAAHTVEEKIVELHRRKRGLAESLLAG 1399


>gi|289768102|ref|ZP_06527480.1| helicase [Streptomyces lividans TK24]
 gi|289698301|gb|EFD65730.1| helicase [Streptomyces lividans TK24]
          Length = 974

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDE----- 54
             Y    RE    ++                   Q+ +    + +E+H     D      
Sbjct: 742 ALYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARS 801

Query: 55  -KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ +++   A    ++V   +      +                G  + +    +
Sbjct: 802 GKLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMV 861

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 862 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 915

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI + T+++ + + L++K  + D +L
Sbjct: 916 TQPVQVHRLITEGTVEDRIAEMLQSKRALADAIL 949


>gi|256784218|ref|ZP_05522649.1| helicase [Streptomyces lividans TK24]
          Length = 979

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDE----- 54
             Y    RE    ++                   Q+ +    + +E+H     D      
Sbjct: 747 ALYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARS 806

Query: 55  -KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ +++   A    ++V   +      +                G  + +    +
Sbjct: 807 GKLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMV 866

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 867 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 920

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI + T+++ + + L++K  + D +L
Sbjct: 921 TQPVQVHRLITEGTVEDRIAEMLQSKRALADAIL 954


>gi|229178258|ref|ZP_04305628.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
 gi|228605137|gb|EEK62588.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
          Length = 1064

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPVQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|21224583|ref|NP_630362.1| helicase [Streptomyces coelicolor A3(2)]
 gi|6273667|emb|CAB60181.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 977

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDE----- 54
             Y    RE    ++                   Q+ +    + +E+H     D      
Sbjct: 745 ALYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARS 804

Query: 55  -KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ +++   A    ++V   +      +                G  + +    +
Sbjct: 805 GKLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMV 864

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 865 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 918

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI + T+++ + + L++K  + D +L
Sbjct: 919 TQPVQVHRLITEGTVEDRIAEMLQSKRALADAIL 952


>gi|313618637|gb|EFR90589.1| SNF2 family helicase [Listeria innocua FSL S4-378]
          Length = 208

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 21/183 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            +   +  Q+      + E     +    K+  L   I+ A  N   I++   F   LA 
Sbjct: 8   LAGLTRLRQICCDPSLFVEN---YQGESGKLLQLFDTIQTARENGKRILIFSQFTGMLAI 64

Query: 84  LQKAFPQ---------GRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +++   +         G+T  K     +  +NEG+  +      + G GLNL  G + ++
Sbjct: 65  IRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEGENDIFLISLKAGGTGLNL-VGADTVI 123

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + LWW+    +Q   R       + G KR V V+ +I + TI+E +    + K  + D 
Sbjct: 124 LYDLWWNPAVEEQATGR-----AHRIGQKRVVQVFRMITKGTIEERIFDLQKKKQALVDE 178

Query: 194 LLN 196
           L+ 
Sbjct: 179 LIQ 181


>gi|108763874|ref|YP_633501.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467754|gb|ABF92939.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1083

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             +  +  ++  Q+                   K++    ++E   A     +V   F   
Sbjct: 883  VSILAALMRLRQVCCDPRLLKMPPGTLMPPSAKVERFLQLVEDLVAEGHRALVFSQFTEM 942

Query: 81   LARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            L  L++          +  GRT D+     +  N    PL F    + G GLNL    + 
Sbjct: 943  LELLKQEADKKGLRYLYLDGRTKDRMGKVDEYNNPDGPPLFFISLKAGGTGLNLT-AADY 1001

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ F  WW+     Q  +R       + G  RAV  Y LI + T++E +L   R K  + 
Sbjct: 1002 VIHFDPWWNPAVEDQATDR-----THRIGQTRAVISYKLITRGTVEEKILALQRRKRELA 1056

Query: 192  DLLLNA 197
              +L  
Sbjct: 1057 AGVLGG 1062


>gi|228900434|ref|ZP_04064661.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
 gi|228859174|gb|EEN03607.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
          Length = 1064

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGE 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|149177854|ref|ZP_01856453.1| Snf2 family protein [Planctomyces maris DSM 8797]
 gi|148843344|gb|EDL57708.1| Snf2 family protein [Planctomyces maris DSM 8797]
          Length = 1110

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 29/213 (13%)

Query: 3    QYHKFQ---RELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y + +   R+    +           +     ++  Q A      D  +        K+
Sbjct: 889  LYDELRQHYRDSILGMVESKGLGKTKIHVLEALLRLRQAACHPALLDRGR--ALDASAKM 946

Query: 57   KAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
              L    E +IE+      +V   F S L+ +Q+   Q         G+T D+     + 
Sbjct: 947  DVLIPHLEELIEE--GHKALVFSQFTSMLSIVQEHLDQKNIVYEYLDGQTRDRKERVDRF 1004

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G GLNL    + +     WW+     Q I+R       + G  +
Sbjct: 1005 QTDKDCGVFLISLKAGGLGLNLT-AADYVFILDPWWNPAVETQAIDR-----AHRVGQTK 1058

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VF Y LI +NT++E + +  + K  + D +L 
Sbjct: 1059 RVFAYKLICRNTVEEKITELQQQKRELADAILE 1091


>gi|169342801|ref|ZP_02863835.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
 gi|169299058|gb|EDS81130.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
          Length = 1084

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 23/196 (11%)

Query: 14   DLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            D +  N       S   K  QLA + AV  ++          KI+ L  I+ +       
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLALDPAVTIND----YMGESAKIEVLVEILNQGIEEGHK 926

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+V   F S L  +     + +             K    + E+NEG+  +      + G
Sbjct: 927  ILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAGG 986

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E V
Sbjct: 987  TGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRIGQKNVVEVIKLIAKGTIEEKV 1040

Query: 181  LQRLRTKSTIQDLLLN 196
            +     K  +   ++ 
Sbjct: 1041 VALQEEKKELISKIIE 1056


>gi|186686080|ref|YP_001869276.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186468532|gb|ACC84333.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + EA        ++ +K  +               E+   K++  
Sbjct: 1184 YEALRRQAISKLTESDAEAGKKHLQVLAEIMKLRRACCNPSLVMPG---TELPSSKLQLF 1240

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++    Q             + +    +  +  G
Sbjct: 1241 GEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQAG 1300

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 1301 SGDVFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQQRPVTI 1354

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A++TI+E +++    K  + D LL   +
Sbjct: 1355 YRLVAKDTIEEKIVELHHHKRDLADSLLEGTE 1386


>gi|150388431|ref|YP_001318480.1| non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
 gi|149948293|gb|ABR46821.1| Non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
          Length = 1141

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E    K+  LE ++  +      I++   F S L  
Sbjct: 949  LAGLTRLRQICCHPSLFVEN---YEGGSGKLDLLEEVVAASLEAGHRILLFSQFTSMLKM 1005

Query: 84   LQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++   Q             ++     ++E+NEGK  +      + G GLNL  G + ++
Sbjct: 1006 IREKLDQQGIEYAYLDGSTPMEARGEIVKEFNEGKGSIFLISLKAGGTGLNLT-GADTVI 1064

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+     Q  +R       + G K  V V   IAQ TI+E + +    K  + + 
Sbjct: 1065 HFDPWWNPAVEDQATDR-----AYRIGQKNKVHVMKFIAQGTIEEKIFKLQERKKEMINA 1119

Query: 194  LLN 196
            ++ 
Sbjct: 1120 VIQ 1122


>gi|218896786|ref|YP_002445197.1| putative helicase [Bacillus cereus G9842]
 gi|218540700|gb|ACK93094.1| putative helicase [Bacillus cereus G9842]
          Length = 1064

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGE 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AQ TI+E + +   +K  +   ++ 
Sbjct: 1019 VAQGTIEEKMHELQESKKNLIAEVIE 1044


>gi|111018652|ref|YP_701624.1| helicase [Rhodococcus jostii RHA1]
 gi|110818182|gb|ABG93466.1| probable helicase [Rhodococcus jostii RHA1]
          Length = 1070

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L  + +   F          QL+  A   D E  + +V   K+ 
Sbjct: 851  KVYDTHLQRERQKILGLLADVDKNRFTILQSLTLLRQLSLDAGLVDAE--YHDVPSAKVD 908

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEG 107
            AL   +    A     +V   F   L +++                  +    ++E+ EG
Sbjct: 909  ALLEQLADVVAGGHRALVFSQFTGFLGKIRDRLADAGIAHSYLDGSTRRRGDVLREFKEG 968

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL       +    WW+     Q ++R       + G  R V V
Sbjct: 969  AAPVFLISLKAGGFGLNLTEADYCFIL-DPWWNPATEAQAVDR-----AHRIGQTRNVMV 1022

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++TI++ V+     KS +   +++A
Sbjct: 1023 YRLIAKDTIEDKVMALKAKKSALFASVMDA 1052


>gi|326203945|ref|ZP_08193807.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
            DSM 2782]
 gi|325986043|gb|EGD46877.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
            DSM 2782]
          Length = 1077

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 81/214 (37%), Gaps = 27/214 (12%)

Query: 2    KQY----HKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + + +++ ++   G         S   +  QL      + +     E    K
Sbjct: 854  KLYIAYLEQAKGDIFKEINQNGYERSQIKILSVLTRLRQLCCHPALFVDN---YEGDSGK 910

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
            +  L+ I+  +  +   I++   F S LA +++                  ++    ++ 
Sbjct: 911  LLLLKEIVVDSLTSGHRILLFSQFTSMLAIIRQWLQEDGVDYLYLDGSTPAEERMKMVKN 970

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      S G GLNL  G + ++ +  WW+     Q  +R       + G  +
Sbjct: 971  FNNGQGQIFLLSLKSGGTGLNLT-GADTVIHYDPWWNPAVEDQATDR-----AYRIGQLK 1024

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  L+   TI+E +L+    K  + D ++ +
Sbjct: 1025 TVHVMKLVTHGTIEEKILRLKDRKKQLVDAVIQS 1058


>gi|302549833|ref|ZP_07302175.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302467451|gb|EFL30544.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 948

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G    A             Q+ N  A Y  EE+        K++ L
Sbjct: 721 LYEAVVREALAEISGAGSMARRGLIVKLLTGLKQICNHPAQYLKEERPVIAGRSGKLELL 780

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
           + +++   A  A ++V   +    ARL +    GR            + +    ++ + +
Sbjct: 781 DELLDTILAERAGVLVFTQYVRM-ARLLERHLAGRGTPSQFLHGGTPVAEREAMVRRFQD 839

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V 
Sbjct: 840 GEVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQ 893

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ ++A+ TI++ + + L  K  + D +L + + 
Sbjct: 894 VHRIVAEGTIEDRIAELLTRKRALADAVLGSGEA 927


>gi|196041238|ref|ZP_03108533.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196027946|gb|EDX66558.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 1064

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMYELQESKKNLIAEVIE 1044


>gi|290466810|gb|ADD25740.1| putative helicase [Lactococcus phage 1358]
          Length = 577

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 37/207 (17%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYD-------------------EEKHWKEVHDEKIKAL 59
            I   +  S      QLA+GA+Y                     + +   EVHD K+ AL
Sbjct: 331 KITTEHIFSVINALRQLASGAIYEQLDTTGLDEEEIAERYNEHMKNRKHIEVHDAKLDAL 390

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--PCTIQEWNEGKIPLLFAHPA 117
             IIE+     + V   +  +  R+++ F   R L+       +  WN GKIP+L A+PA
Sbjct: 391 ADIIEREQD-NVFVFVSYKHEAERIRQRFEGVRFLNTANAAEVLPLWNAGKIPVLVANPA 449

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL------I 171
           S   GLN+Q GG+ +V++S+ +  E   Q   R+      + G K  V VY L      I
Sbjct: 450 STKFGLNMQDGGHTIVWYSMGYSFEAFTQSNARLA-----RQGQKHEVKVYMLQSWLAPI 504

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
             +T  E +++      TI   +++A+
Sbjct: 505 QDDTQLEDIMRAQ----TIDSAIMDAI 527


>gi|229017133|ref|ZP_04174048.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
 gi|229023310|ref|ZP_04179819.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228738015|gb|EEL88502.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228744153|gb|EEL94240.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
          Length = 1064

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 25/211 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +A  TI+E + +   +K  +   ++   K++
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEIIEPGKEK 1049


>gi|115378604|ref|ZP_01465757.1| Snf2 family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364391|gb|EAU63473.1| Snf2 family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1130

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             +  +  ++  Q+           +       K++    +++   A     +V   F   
Sbjct: 931  VSILAALMRLRQVCCDPRLLKLPPNTLLPSSAKLERFGQLVDDLVAEGHRALVFSQFTEM 990

Query: 81   LARLQ---------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
            L  L+           +  GRT D+    + ++N  +  PL F    + G GLNL    +
Sbjct: 991  LELLKTEADKRGLNYLYLDGRTKDRMAK-VDDFNRPEGPPLFFISLKAGGTGLNLT-AAD 1048

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ +  WW+     Q  +R       + G  RAV  Y LI + T++E +L   R K  +
Sbjct: 1049 YVIHYDPWWNPAVEDQATDR-----THRIGQTRAVISYKLITRGTVEEKILSLQRRKKEL 1103

Query: 191  QDLLL 195
               +L
Sbjct: 1104 AAGVL 1108


>gi|134301077|ref|YP_001114573.1| SNF2 helicase associated domain-containing protein [Desulfotomaculum
            reducens MI-1]
 gi|134053777|gb|ABO51748.1| SNF2 helicase associated domain protein [Desulfotomaculum reducens
            MI-1]
          Length = 1084

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 23/209 (11%)

Query: 1    MKQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    K ++E      ++G         +   +  QL      + E          K++ 
Sbjct: 864  LAYLEKIRQETKDALQIEGFEKSRIKILAGLTRLRQLCCHPSLFLEN---YSGQSGKLEQ 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDP-CTIQEWNE 106
            L  IIE    N   ++V   F S L  + +             G+T  KD     Q +N 
Sbjct: 921  LMEIIENTLENKRRLLVFSQFASMLGIICEELDRLNKSYFYLDGQTPAKDRVEMTQRFNN 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  L      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V 
Sbjct: 981  GEKDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRMGQKNCVQ 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LI + TI+E + +  + K  + + ++
Sbjct: 1035 VIKLITKGTIEEKIYEMQQQKKELIEQVI 1063


>gi|15896248|ref|NP_349597.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026052|gb|AAK80937.1|AE007796_7 Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510403|gb|ADZ22039.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1052

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 21/181 (11%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            S   +  Q+ +      E  + K   + K+  L   I+   AN   I+V   F S L  +
Sbjct: 857  SLLTRLRQICSNPRTVVENYNGK---NAKMDVLMDTIKTSIANRHRILVFSQFTSVLKSI 913

Query: 85   QK---------AFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +           +  G T  KD      E+N+GK  +      + G GLNL  G +I+V 
Sbjct: 914  KDKLIEKDIDVMYLDGNTKMKDRFQLADEFNKGKGEVFLISLKAGGTGLNLT-GADIVVH 972

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F  WW+     Q  +R       + G K+ V +  LI + TI+E + +  + K  + D +
Sbjct: 973  FDPWWNPAVENQASDR-----AHRIGQKKNVEIIKLITRGTIEEKIYKLQQEKKKMVDNV 1027

Query: 195  L 195
            L
Sbjct: 1028 L 1028


>gi|168213595|ref|ZP_02639220.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
 gi|170714879|gb|EDT27061.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
          Length = 1084

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      K +AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKTEALVEILNQGIEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GTGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|226943915|ref|YP_002798988.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
 gi|226718842|gb|ACO78013.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
          Length = 1357

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y   +++    +     E   S    ++  +  +          +     +   K+ A 
Sbjct: 1138 LYEAMRQQALESISQSGEEGSQSLRVLTEITRLRRFCCHPSLVLPDSD---LPGSKLAAF 1194

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
              I+E+   +    +V   F   L+ ++K   +               +    ++ +  G
Sbjct: 1195 AEIVEELLDSRHKALVFSQFVDHLSIVRKWLEERGIRYQYLDGATPAKERMARVEAFQGG 1254

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 1255 DGDIFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRMGQQRPVTI 1308

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A+NTI+E +L     K  + D LL  
Sbjct: 1309 YRLVAENTIEERILALHGQKRDLADSLLEG 1338


>gi|150017499|ref|YP_001309753.1| non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149903964|gb|ABR34797.1| Non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1085

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 21/182 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   K  Q+        +          KI AL  ++E++      I+V   F S L  
Sbjct: 888  LAYITKLRQICLDPSVTMDN---YLGSSGKIDALIELLEQSIDEGHKILVFSQFTSVLKN 944

Query: 84   LQKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + K   +   L                + E+N G+  +      + G GLNL    +I++
Sbjct: 945  ISKILKEKNFLFSYLDGSVSSINRMKMVDEFNNGENTVFLVSLKAGGTGLNLT-SADIVI 1003

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+     Q  +R       + G K  V V  LIAQ TI+E +++   +K  + + 
Sbjct: 1004 HFDPWWNPAVEDQATDR-----AHRIGQKNVVEVIKLIAQGTIEEKIVELQDSKRELINK 1058

Query: 194  LL 195
            +L
Sbjct: 1059 IL 1060


>gi|296125777|ref|YP_003633029.1| SNF2-related protein [Brachyspira murdochii DSM 12563]
 gi|296017593|gb|ADG70830.1| SNF2-related protein [Brachyspira murdochii DSM 12563]
          Length = 1031

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
            S   +  Q+        ++   +     K      +I +A      ++V   F   L  +
Sbjct: 839  SALTRLRQVCCHPRLMHDDLRGESHTSGKFNMFIEMIREAISGGHSVLVFSSFTRMLNLM 898

Query: 85   QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            + AF +         G T D+    +  +N G+ P+      + G GL L    + ++ +
Sbjct: 899  RSAFKKLGIDYFYLDGATKDRM-DLVHRFNAGEAPVFLLSLKAAGTGLTLTQ-ADTVMHY 956

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LWW+     Q  +R       + G KR V  Y LI + TI+E +L+    K  + D ++
Sbjct: 957  DLWWNPAVEDQATDR-----AYRIGQKRVVTNYKLITRGTIEEKILELQNKKRVLIDTVV 1011


>gi|149180418|ref|ZP_01858923.1| helicase, SWF/SNF family protein [Bacillus sp. SG-1]
 gi|148852610|gb|EDL66755.1| helicase, SWF/SNF family protein [Bacillus sp. SG-1]
          Length = 1051

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + +    L  + +        +   +  Q+      + +     +    K++ L  II
Sbjct: 836  KLKHDTLKHLDKDTLRKNKIKILAGITRLRQICCHPALFVDG---YQGKSAKLQQLMEII 892

Query: 64   EKAN--AAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIPL 111
            E++      +++   F   L           L   +  G T  ++   +   +N G+  +
Sbjct: 893  EESKSSGRRVLIFSQFTRMLGLIGRELTGEGLPYFYLDGATPSEERMDLCNRYNTGERDI 952

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL +  + ++ +  WW+    QQ  +R       + G +  V V  L+
Sbjct: 953  FLISLKAGGTGLNL-HSADTVILYDTWWNPAVEQQAADR-----AHRMGQQNTVQVIRLV 1006

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
            A  TI+E + +    K  + + L+++
Sbjct: 1007 ATGTIEEKMNELQEKKRHLVEELIDS 1032


>gi|182626118|ref|ZP_02953879.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
 gi|177908639|gb|EDT71160.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
          Length = 1084

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAA 69
            D +  N       S   K  QLA      D      +      KI+AL  I+ +      
Sbjct: 871  DAEEFNKSKIEILSYITKLRQLA-----LDPSVTINDYMGESAKIEALVEILNQGIEEGH 925

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+V   F S L  +     + +             K    + E+NEG+  +      + 
Sbjct: 926  KILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLISLKAG 985

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +I++ F  WW+     Q  +R       + G K  V V  LIA+ TI+E 
Sbjct: 986  GIGLNLT-SADIVIHFDPWWNPAVENQATDR-----AHRMGQKNVVEVIKLIAKGTIEEK 1039

Query: 180  VLQRLRTKSTIQDLLLN 196
            V+     K  +   ++ 
Sbjct: 1040 VVALQEEKKELISKIIE 1056


>gi|30019888|ref|NP_831519.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|229127175|ref|ZP_04256172.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
 gi|29895433|gb|AAP08720.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|228656291|gb|EEL12132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
          Length = 1064

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  +D   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|320353039|ref|YP_004194378.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320121541|gb|ADW17087.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 1447

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 29/212 (13%)

Query: 4    YHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +++    +  E     N        ++  +  Q          +     +   K+ 
Sbjct: 1228 YEALRQQALERIDAEQ--GTNGQKPMRILAEITRLRQACCHPRLLQADST---IAGAKLA 1282

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPC-TIQEWN 105
                ++ +   N    +V   F   LA +++          +  G T  K+    ++ + 
Sbjct: 1283 LFGEVVAELLDNGHKALVFSQFVGHLALIREYLDARAIPYRYLDGSTPPKERQREVEAFQ 1342

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  L      + G GLNL    + ++    WW+     Q  +R       + G +R V
Sbjct: 1343 AGQGDLFLISLKAGGLGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQQRPV 1396

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+AQ TI+E +++    K  + D LL+A
Sbjct: 1397 TVYRLVAQQTIEEKIVRLHAEKRDLADSLLDA 1428


>gi|225619641|ref|YP_002720898.1| superfamily II D/R helicase [Brachyspira hyodysenteriae WA1]
 gi|225214460|gb|ACN83194.1| HepA, Superfamily II D/R helicase, SNF2 family [Brachyspira
            hyodysenteriae WA1]
          Length = 1033

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 18/180 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
            S   +  Q+        ++   +     K      +I++A      ++V   F   L  +
Sbjct: 841  SALTRLRQVCCHPRLMHDDLRGESHTSGKFHMFIEMIKEAISGGHSVLVFSSFTRMLNLM 900

Query: 85   QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            + AF +         G T D+    +  +N G+ P+      + G GL L    + ++ +
Sbjct: 901  RSAFKKLGIDYFYLDGATKDRM-DLVHRFNAGEAPIFLLSLKAAGTGLTLTQ-ADTVMHY 958

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LWW+     Q  +R       + G KR V  Y LI + TI+E +L+    K  + D ++
Sbjct: 959  DLWWNPAVEDQATDR-----AYRIGQKRVVTNYKLITRGTIEEKILELQNKKRLLIDTVV 1013


>gi|229132678|ref|ZP_04261525.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
 gi|228650805|gb|EEL06793.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
          Length = 1068

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQESKKNLIAEIIE 1048


>gi|1769947|emb|CAA67095.1| SNF [Bacillus cereus ATCC 10987]
          Length = 1064

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K++ L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKLEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKHLIAEVIE 1044


>gi|163939654|ref|YP_001644538.1| non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
 gi|163861851|gb|ABY42910.1| Non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
          Length = 1068

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQESKKNLIAEIIE 1048


>gi|229059502|ref|ZP_04196884.1| Helicase, SWF/SNF [Bacillus cereus AH603]
 gi|228719785|gb|EEL71379.1| Helicase, SWF/SNF [Bacillus cereus AH603]
          Length = 1068

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQESKKNLIAEIIE 1048


>gi|227875351|ref|ZP_03993493.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844256|gb|EEJ54423.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
          Length = 966

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
            Y K+      + +G   +  N  +   +  QL+  A   +          D  + AL  
Sbjct: 751 LYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPAVPEDGAKIDYLVDALPD 810

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +   A    I+V   F S LA L+          A+  G T ++    +  +  G   + 
Sbjct: 811 L--AAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSARVF 867

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A
Sbjct: 868 LISLKSGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVA 921

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           +NTI++ VL     K  + D +L  
Sbjct: 922 KNTIEQRVLAMQAQKRELFDQVLRG 946


>gi|89902690|ref|YP_525161.1| SNF2-like protein [Rhodoferax ferrireducens T118]
 gi|89347427|gb|ABD71630.1| SNF2-related [Rhodoferax ferrireducens T118]
          Length = 1178

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 16/195 (8%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
             D +G            +K  Q+             K  +  K++ L  ++ +  A    
Sbjct: 967  LDTKGMAKSQITILDALLKLRQVCCDPHLVTLAAAKKVSNSAKLERLMEMLPEMLAEGRR 1026

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGHG 122
            I++   F S L  ++    +             K    I+++  G +PL      + G G
Sbjct: 1027 ILLFSQFTSMLKLIEAELQKRNIPWIKLTGQSQKRDALIEQFTSGAVPLFLISLKAGGVG 1086

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + ++ +  WW+     Q  +R       + G  ++V+V  L+AQ TI+E +L 
Sbjct: 1087 LNLPQ-ADTVIHYDPWWNPAVENQATDR-----AHRIGQTQSVWVVKLVAQGTIEERILG 1140

Query: 183  RLRTKSTIQDLLLNA 197
                K+ + + + + 
Sbjct: 1141 LQERKAALAESMYSG 1155


>gi|42780946|ref|NP_978193.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42736867|gb|AAS40801.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 1064

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K++ L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKLEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKHLIAEVIE 1044


>gi|269976365|ref|ZP_06183357.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
 gi|269935436|gb|EEZ91978.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
          Length = 970

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
            Y K+      + +G   +  N  +   +  QL+  A   +          D  + AL  
Sbjct: 755 LYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPAVPEDGAKIDYLVDALPD 814

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +   A    I+V   F S LA L+          A+  G T ++    +  +  G   + 
Sbjct: 815 L--AAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSARVF 871

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A
Sbjct: 872 LISLKSGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVA 925

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           +NTI++ VL     K  + D +L  
Sbjct: 926 KNTIEQRVLAMQAQKRELFDQVLRG 950


>gi|251773065|gb|EES53621.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 1381

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 75/211 (35%), Gaps = 26/211 (12%)

Query: 4    YHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   +R+    L+      +     +  ++  K  +        +       +   K+ A
Sbjct: 1162 YEALRRKALETLEKLSGREKGSSRIHILAEITKLRRALCHPALVEP---LTLLPGAKLDA 1218

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
              +++ +  +N    +V   F   L R+ K+    +             +    +  +  
Sbjct: 1219 FHLLVNELLSNRHKALVFSQFTGFLDRVAKSLDAKKIPYQYLDGSTPPKEREKRVAAFQA 1278

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  L      + G GLNL    + ++    WW+     Q  +R       + G +R V 
Sbjct: 1279 GQGDLFLISLRAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQQRPVT 1332

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y LI + +++E +L+  + K  +   LL  
Sbjct: 1333 IYRLIVRESLEEKILELHKKKRDLATDLLEG 1363


>gi|315038431|ref|YP_004031999.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
 gi|312276564|gb|ADQ59204.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
          Length = 1180

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 87/212 (41%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++ +      F   ++  K  ++        +         +K+K
Sbjct: 959  LYHLQMNKIIAQLNGQDDDDFKKSRFQILAQITKLREICCDPHLLYDN---YHGKSDKLK 1015

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
                +I+    N   I++   F S L  LQ+   + +            +K    IQ +N
Sbjct: 1016 TTIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1075

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++    Q  +R       + G K +
Sbjct: 1076 SLKQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNIAAENQATDR-----AHRIGQKNS 1129

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ Q+T++E +++  + K+ +   +LN
Sbjct: 1130 VKIYKMVTQDTVEERIIKLQQKKAELAQAILN 1161


>gi|323357442|ref|YP_004223838.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
            testaceum StLB037]
 gi|323273813|dbj|BAJ73958.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
            testaceum StLB037]
          Length = 1063

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +    +R+    L  +      +  +++    QLA      DE     E    K+ 
Sbjct: 840  KLYDRRFHRERQRLLGLLDDAEGNSFAIFRSLTMLRQLALDPALVDEG----EAPSAKLD 895

Query: 58   ALEVII--EKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNE 106
            ALE ++    A    ++V   F   L   ++          +  G T ++    I  + +
Sbjct: 896  ALEELLVEAAAEGHRVLVLSQFTRFLRAARQRCTDAGLASGYLDGTTTNRQAE-IDRFRD 954

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P  F    + G GLNL    + +V    WW+     Q I+R       + G  R V 
Sbjct: 955  GDDPAFFVSLKAGGVGLNLVE-ADYVVLLDPWWNPAVEDQAIDR-----AHRIGQTRPVI 1008

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L++ +T+++ V+     K+ +   +L+ 
Sbjct: 1009 VYRLVSSDTVEQKVVALREAKAELFSRVLDG 1039


>gi|110004998|emb|CAK99329.1| hypothetical dna/rna helicase protein [Spiroplasma citri]
          Length = 1098

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 22/183 (12%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL 84
            +   K  Q+       D++    +    K+ AL  I +    +   I++   F + L R+
Sbjct: 903  ATLTKLRQICCDPSILDKK---YQNESAKLDALRDIFDDLAGSGHKILIFSQFTTVLKRI 959

Query: 85   ---------QKAFPQGRTLDKDPCTI-QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILV 133
                     Q  +  G+T  +    + +++NE KI  +      + G GLNL    ++++
Sbjct: 960  KAIVEEIGLQYFYLDGKTRSESRVLMTEKFNEDKIINVFLISLKAGGVGLNLT-AADVVI 1018

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+     Q  +R       + G +  V V  LIA+ TI+E +L     K  + + 
Sbjct: 1019 HFDPWWNPSVENQATDR-----AHRFGQQNTVQVIKLIAKGTIEEKILTIQNNKQEVINA 1073

Query: 194  LLN 196
            +LN
Sbjct: 1074 VLN 1076


>gi|229166704|ref|ZP_04294454.1| Helicase, SWF/SNF [Bacillus cereus AH621]
 gi|228616701|gb|EEK73776.1| Helicase, SWF/SNF [Bacillus cereus AH621]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEIIE 1044


>gi|186687055|ref|YP_001870198.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186469358|gb|ACC85157.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +A        ++ +K  +          +     +   K++  
Sbjct: 1184 YEALRRQAISKLTESDADAGKKHLQVLAEIMKLRRACCNPSLVMPD---TVLPSSKLQLF 1240

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++    Q             + +    +  +  G
Sbjct: 1241 GEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQAG 1300

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 1301 SGDVFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQQRPVTI 1354

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E ++Q    K  + D LL  
Sbjct: 1355 YRLVAKDTIEEKIVQLHHQKRDLADSLLEG 1384


>gi|229011148|ref|ZP_04168341.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
 gi|228750031|gb|EEL99863.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K   L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK----GSSAKFDQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEIIE 1044


>gi|226307557|ref|YP_002767517.1| helicase [Rhodococcus erythropolis PR4]
 gi|226186674|dbj|BAH34778.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 1060

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 21/204 (10%)

Query: 6    KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R+    L  + +   F          QL+      DEE     V   K+ AL   ++
Sbjct: 848  QRERQKILGLLDDVDKNRFTILQSQTVLRQLSLDVSLVDEESGP--VPSAKVDALVEQLD 905

Query: 65   K--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               A     ++   F   L          ++  ++  G T ++    ++E+  G  P+  
Sbjct: 906  DVIAGGHRALIFSQFTGFLGSVRKRLEAEKIPYSYLDGSTRNRGE-VLEEFKSGVAPVFL 964

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL       +    WW+     Q ++R       + G  R V VY LIA+
Sbjct: 965  ISLKAGGFGLNLTEADYCFIL-DPWWNPAAEAQAVDR-----THRIGQTRNVMVYRLIAK 1018

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            +TI+E V+     KS +   +++A
Sbjct: 1019 DTIEEKVMALKAKKSALFSNVMDA 1042


>gi|320103193|ref|YP_004178784.1| SNF2-like protein [Isosphaera pallida ATCC 43644]
 gi|319750475|gb|ADV62235.1| SNF2-related protein [Isosphaera pallida ATCC 43644]
          Length = 1912

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y + +      L G+     +       ++  Q +        ++  +     K+  L
Sbjct: 1694 KDYEELRTHYRRALLGKTKGGSHLEVLEALLRLRQASCHPGLIHPDRVDQ--PSAKLDVL 1751

Query: 60   ----EVIIEKANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
                  +IE+      ++   F           D   +   +  G+T ++     +  N+
Sbjct: 1752 LPHLAEVIEE--GHKALIFSQFTRFLNIVKDRLDKEGIVYEYLDGKTHNRAERVERFQND 1809

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +P+      + G GLNL      +     WW+     Q I+R       + G    VF
Sbjct: 1810 PNVPVFLISLKAGGLGLNLT-AAEYVYLLDPWWNPAVEAQAIDR-----SHRIGQTSHVF 1863

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Y LI ++T+++ +++  +TK  + D +L  
Sbjct: 1864 AYRLICRDTVEQKIIELQKTKRALADAILGG 1894


>gi|306818666|ref|ZP_07452388.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
 gi|304648352|gb|EFM45655.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
          Length = 970

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
            Y K+      + +G   +  N  +   +  QL+  A   +          D  + AL  
Sbjct: 755 LYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPAVPEDGAKIDYLVDALPD 814

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +   A    I+V   F S LA L+          A+  G T ++    +  +  G   + 
Sbjct: 815 L--AAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSARVF 871

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A
Sbjct: 872 LISLKSGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVA 925

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           +NTI++ VL     K  + D +L  
Sbjct: 926 KNTIEQRVLAMQAQKRELFDQVLRG 950


>gi|315223118|ref|ZP_07864986.1| protein, SNF2 family [Streptococcus anginosus F0211]
 gi|315187807|gb|EFU21554.1| protein, SNF2 family [Streptococcus anginosus F0211]
          Length = 1036

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  +  RE       E +        S  ++  Q+ +    + E+ H       K+++
Sbjct: 811  LAQLKQM-RERVLTSTEEELNRSKMEILSGLMRLRQICDTPALFMEDYH---GESGKLES 866

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE 106
            L  ++E+    +  +++   F   L  ++K   + +             +       +N 
Sbjct: 867  LMELLEQIQTGSHRVLIFSQFRGMLDIIEKELKKMKIETFKITGSTPAKERQEMTNAFNN 926

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 927  GEGDAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVESQAIGR-----AHRMGQERNVE 980

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY LI + TI+E + +   +K  +   +L+  +  
Sbjct: 981  VYRLITRGTIEEKIQELQESKRHLVSTILDGTESR 1015


>gi|310823284|ref|YP_003955642.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309396356|gb|ADO73815.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1081

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             +  +  ++  Q+           +       K++    +++   A     +V   F   
Sbjct: 882  VSILAALMRLRQVCCDPRLLKLPPNTLLPSSAKLERFGQLVDDLVAEGHRALVFSQFTEM 941

Query: 81   LARLQ---------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
            L  L+           +  GRT D+    + ++N  +  PL F    + G GLNL    +
Sbjct: 942  LELLKTEADKRGLNYLYLDGRTKDRMAK-VDDFNRPEGPPLFFISLKAGGTGLNLT-AAD 999

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ +  WW+     Q  +R       + G  RAV  Y LI + T++E +L   R K  +
Sbjct: 1000 YVIHYDPWWNPAVEDQATDR-----THRIGQTRAVISYKLITRGTVEEKILSLQRRKKEL 1054

Query: 191  QDLLL 195
               +L
Sbjct: 1055 AAGVL 1059


>gi|124004680|ref|ZP_01689524.1| Snf2 family helicase [Microscilla marina ATCC 23134]
 gi|123989803|gb|EAY29332.1| Snf2 family helicase [Microscilla marina ATCC 23134]
          Length = 960

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 24/210 (11%)

Query: 2   KQYHKFQ----RELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEE-KHWKEVHDE 54
           K Y K +     E+   ++   +            K  QLAN     D+  +      D+
Sbjct: 739 KAYEKVKSQYRNEILKQIESSGMAKTQFLLLQGLTKLRQLANHPRMIDQGYEESSGKMDD 798

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN 105
            +  LE II   N   ++V   F   L  L+ AF +         G T ++     Q   
Sbjct: 799 ILYKLESII--GNGHKVLVFSQFVKHLQLLKNAFEERQWRFAYLDGSTKNRQQQVEQFQT 856

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +I L      + G GLNL      +     WW+     Q ++R       + G +  V
Sbjct: 857 NDEIQLFLISLKAGGVGLNLT-AAEYVFLLDPWWNPAIEAQAVDR-----AHRIGQENTV 910

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           F Y  I + T++E +L     K  +   L+
Sbjct: 911 FTYKFITKGTVEEKILALQTNKRRLAQDLI 940


>gi|307700797|ref|ZP_07637822.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307613792|gb|EFN93036.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 970

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
            Y K+      + +G   +  N  +   +  QL+  A   +          D  + AL  
Sbjct: 755 LYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPAVPEDGAKIDYLVDALPD 814

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +   A    I+V   F S LA L+          A+  G T ++    +  +  G   + 
Sbjct: 815 L--AAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSARVF 871

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNL    + +     WW+ +   Q I+R       + G  R V VY L+A
Sbjct: 872 LISLKSGGFGLNLT-AADYVFLCDPWWNPQVESQAIDR-----AHRIGQTRPVNVYRLVA 925

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           +NTI++ VL     K  + D +L  
Sbjct: 926 KNTIEQRVLAMQAQKRELFDQVLRG 950


>gi|220930817|ref|YP_002507726.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220001145|gb|ACL77746.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 1077

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 21/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             S   +  QL      + +     E    K+  L+ I+  +  +   I++   F S LA 
Sbjct: 884  LSVLTRLRQLCCHPSLFVDN---YEGDSGKLLLLKEIVGDSLTSGHRILLFSQFTSMLAI 940

Query: 84   LQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++                  D+    +  +N G+  +      S G GLNL  G + ++
Sbjct: 941  IRQWLQEDGIDYLYLDGSTPADERMKMVTNFNNGQGQIFLLSLKSGGTGLNLT-GADTVI 999

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             +  WW+     Q  +R       + G  + V V  L+   TI+E +L     K  + D 
Sbjct: 1000 HYDPWWNPAVEDQATDR-----AYRIGQLKTVHVMKLVTHGTIEEKILHLKDRKKQLVDA 1054

Query: 194  LLNA 197
            ++ +
Sbjct: 1055 VIQS 1058


>gi|302525636|ref|ZP_07277978.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
 gi|302434531|gb|EFL06347.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
          Length = 713

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    ++                +  Q+ N  A Y  E          K+ A 
Sbjct: 488 LYEAVVRENLAQIREAQGVQRRGQVLKLLTELKQICNHPAHYLKESAGVLSGRSGKLAAF 547

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRT-LDKDPCTIQEWNEG 107
           E +++        ++V   +               L  A   G     +    +  +  G
Sbjct: 548 EELLDVILDEGESVLVFSQYVRLCRLLERRLAERGLPTALLSGEVGPKQRDEMVAAFQSG 607

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + ++ +  WW+     Q  +R       + G  R V V
Sbjct: 608 EVPVFLLSLKAGGVGLNLTQATH-VIHYDRWWNPAVEDQATDR-----AYRIGQDRPVQV 661

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + LIA+ T++E +   L TK  + D ++ A
Sbjct: 662 HRLIAEGTLEERIAAVLETKRGLADAVVGA 691


>gi|307323253|ref|ZP_07602463.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
 gi|306890742|gb|EFN21718.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
          Length = 978

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G                  Q+ N  A Y  E++        K++ L
Sbjct: 751 LYEAVVREILAEISGTGGLVRRGLIVKLLTGLKQICNHPAQYLKEDRPVIPGRSGKLELL 810

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
           + +++   A  A ++V   +    AR+ +     R            + +    ++ + +
Sbjct: 811 DELLDTILAEGASVLVFTQYVQM-ARILEGHLAARGVPTQLLHGGTPVARREEMVRSFQD 869

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL   G+ +V +  WW+     Q  +R       + G  + V 
Sbjct: 870 GEVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEAQATDR-----AYRIGQTQPVQ 923

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +IA+ T+++ +   L  K  + D +L
Sbjct: 924 VHRIIAEGTVEDRIAAMLTRKQELADAVL 952


>gi|229172496|ref|ZP_04300055.1| Helicase, SWF/SNF [Bacillus cereus MM3]
 gi|228610967|gb|EEK68230.1| Helicase, SWF/SNF [Bacillus cereus MM3]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|86741104|ref|YP_481504.1| SNF2-related [Frankia sp. CcI3]
 gi|86567966|gb|ABD11775.1| SNF2-related [Frankia sp. CcI3]
          Length = 1163

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 21/207 (10%)

Query: 2    KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y + +R+    L  + N   F          QL+  A   D+  H  ++   KI AL 
Sbjct: 947  QTYLQRERQKVLGLVDDMNRNRFTILRSLTLLRQLSLHAGLVDD--HHADLPCAKIDALF 1004

Query: 61   VIIEK--ANAAPIIVAYHFNSDL----ARL-----QKAFPQGRTLDKDPCTIQEWNEGKI 109
              +     +    +V   F   L     RL     +  +  GRT D+    ++ +  G  
Sbjct: 1005 EQLTDVVDSGHRALVFSQFTGFLGKVRERLSALGVEHCYLDGRTRDR-STVLERFKTGSA 1063

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    +       WW+    +Q ++R       + G  R V VY 
Sbjct: 1064 PVFLVSLKAGGFGLNLTE-ADYCFLLDPWWNPATEEQAVDR-----THRIGQSRNVMVYR 1117

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+A++TI+E V+     K+ +   +++
Sbjct: 1118 LVARDTIEEKVMAMKDRKARLFSSVMD 1144


>gi|228984941|ref|ZP_04145110.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
 gi|228774764|gb|EEM23161.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|49481102|ref|YP_035985.1| SWF/SNF family helicase [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49332658|gb|AAT63304.1| helicase, SWF/SNF family [Bacillus thuringiensis serovar konkukian
            str. 97-27]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229155427|ref|ZP_04283536.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
 gi|228627988|gb|EEK84706.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229196057|ref|ZP_04322809.1| Helicase, SWF/SNF [Bacillus cereus m1293]
 gi|228587439|gb|EEK45505.1| Helicase, SWF/SNF [Bacillus cereus m1293]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|324325873|gb|ADY21133.1| helicase, putative [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|301053386|ref|YP_003791597.1| helicase, SWF/SNF family [Bacillus anthracis CI]
 gi|300375555|gb|ADK04459.1| helicase, SWF/SNF family [Bacillus cereus biovar anthracis str. CI]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|228945457|ref|ZP_04107809.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
 gi|228814210|gb|EEM60479.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|254723933|ref|ZP_05185719.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|228933137|ref|ZP_04095994.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
 gi|228826494|gb|EEM72270.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229090820|ref|ZP_04222049.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
 gi|228692523|gb|EEL46253.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|222095476|ref|YP_002529536.1| helicase, putative [Bacillus cereus Q1]
 gi|221239534|gb|ACM12244.1| helicase, putative [Bacillus cereus Q1]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|196033339|ref|ZP_03100751.1| putative helicase [Bacillus cereus W]
 gi|195993773|gb|EDX57729.1| putative helicase [Bacillus cereus W]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|217959332|ref|YP_002337880.1| putative helicase [Bacillus cereus AH187]
 gi|229138547|ref|ZP_04267132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
 gi|217067719|gb|ACJ81969.1| putative helicase [Bacillus cereus AH187]
 gi|228644907|gb|EEL01154.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|118477275|ref|YP_894426.1| SWF/SNF family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|118416500|gb|ABK84919.1| helicase, SWF/SNF family [Bacillus thuringiensis str. Al Hakam]
          Length = 1064

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|218902968|ref|YP_002450802.1| putative helicase [Bacillus cereus AH820]
 gi|228930936|ref|ZP_04093897.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
 gi|229121402|ref|ZP_04250630.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|218535984|gb|ACK88382.1| putative helicase [Bacillus cereus AH820]
 gi|228662045|gb|EEL17657.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|228828715|gb|EEM74390.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|196045190|ref|ZP_03112423.1| putative helicase [Bacillus cereus 03BB108]
 gi|229184042|ref|ZP_04311255.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
 gi|196024192|gb|EDX62866.1| putative helicase [Bacillus cereus 03BB108]
 gi|228599425|gb|EEK57032.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|52143616|ref|YP_083212.1| SWF/SNF family helicase [Bacillus cereus E33L]
 gi|51977085|gb|AAU18635.1| helicase, SWF/SNF family [Bacillus cereus E33L]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|330808510|ref|YP_004352972.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376618|gb|AEA67968.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 897

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 19/181 (10%)

Query: 29  TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ 85
            +K  Q+     +  D     +     K+ +L  ++E+       +++   F S LA ++
Sbjct: 697 LLKLRQVCCDLRLINDATLPARGSTSGKLDSLMEMLEELFEEGRRVLLFSQFTSMLALIE 756

Query: 86  KAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +   +         G+T D+    ++E+  GK  +      + G GLNL    + ++ + 
Sbjct: 757 EELKKRGVEYAILTGQTRDRR-TPVKEFQSGKRQIFLISLKAGGVGLNLTE-ADTVIHYD 814

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G ++ VFVY LIA+ T++E +    + KS +   +L+
Sbjct: 815 PWWNPATENQATDR-----AYRIGQEKPVFVYKLIARGTVEEKIQLLQKEKSDLAAGVLD 869

Query: 197 A 197
            
Sbjct: 870 G 870


>gi|303240851|ref|ZP_07327363.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302591579|gb|EFL61315.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 969

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 4   YHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALE 60
           Y  F+ EL   ++   IE       +   +  Q+    A + D+          K++   
Sbjct: 753 YKSFKEELIPKIEEFGIEKNHIEILAALTRLRQICAHPATFLDD----YTGGSGKLELAM 808

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK 108
            II ++  +   I+V   F   L  ++                   ++    I  +N  +
Sbjct: 809 DIIIQSIDSGHSILVFSQFTKMLKIIRNELENSGINYYYLDGSMKPEERMMEIDNFNSDR 868

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL    ++++ F  WW+     Q  +R       + G K  V VY
Sbjct: 869 EAVFLISLKAGGTGLNLTK-ADVIIHFDPWWNPAVEDQASDR-----AHRMGQKNVVQVY 922

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+ + TI+E +      K  + + ++
Sbjct: 923 KLLTEGTIEEKIANLQDRKRDLIESII 949


>gi|225863710|ref|YP_002749088.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786052|gb|ACO26269.1| putative helicase [Bacillus cereus 03BB102]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|206975015|ref|ZP_03235930.1| putative helicase [Bacillus cereus H3081.97]
 gi|206747034|gb|EDZ58426.1| putative helicase [Bacillus cereus H3081.97]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229189952|ref|ZP_04316960.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
 gi|228593444|gb|EEK51255.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|206970802|ref|ZP_03231754.1| putative helicase [Bacillus cereus AH1134]
 gi|206734438|gb|EDZ51608.1| putative helicase [Bacillus cereus AH1134]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|30261851|ref|NP_844228.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47527092|ref|YP_018441.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184685|ref|YP_027937.1| helicase [Bacillus anthracis str. Sterne]
 gi|165869343|ref|ZP_02214002.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167633415|ref|ZP_02391740.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167638796|ref|ZP_02397071.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170686032|ref|ZP_02877254.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170707256|ref|ZP_02897711.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177650600|ref|ZP_02933567.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190566481|ref|ZP_03019399.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227815374|ref|YP_002815383.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229599991|ref|YP_002866233.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254683351|ref|ZP_05147212.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254734706|ref|ZP_05192418.1| putative helicase [Bacillus anthracis str. Western North America
            USA6153]
 gi|254741114|ref|ZP_05198802.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755357|ref|ZP_05207391.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759895|ref|ZP_05211919.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30256079|gb|AAP25714.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47502240|gb|AAT30916.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178612|gb|AAT53988.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714783|gb|EDR20301.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167513260|gb|EDR88631.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167531453|gb|EDR94131.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170127755|gb|EDS96627.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170669729|gb|EDT20470.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172083744|gb|EDT68804.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190562616|gb|EDV16583.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003172|gb|ACP12915.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229264399|gb|ACQ46036.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|94271432|ref|ZP_01291955.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93450447|gb|EAT01631.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 940

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
            Y   +R+     + Q E        S  +K  +      +   E       H+   K +
Sbjct: 724 LYEALRRQALRNLEQQDEQRAPLKILSAIMKLRRACCHPRLVLPESDLPCAKHELFSKVV 783

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEGKI 109
             ++E  N   I+V   F   L  +++             G T        ++++  G  
Sbjct: 784 SELLE--NGHRILVFSQFVDHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK 841

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L      + G GLNL  G + ++    WW+    QQ  +R       + G  R V VY 
Sbjct: 842 DLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQQASDR-----AHRIGQDRPVTVYR 895

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           LI  NTI+E +L   + K  +   LL+ 
Sbjct: 896 LITSNTIEEKILSLHQRKRNLAGDLLDG 923


>gi|309777116|ref|ZP_07672080.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915125|gb|EFP60901.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1077

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
            ++L   +Q E ++ F   +   +  ++   A    E      +   K+K    ++  A  
Sbjct: 859  QDLQKKMQMEEVDKFQVLAMMTRLREICCDARLLYEN---VTLPSTKLKGCMDLLLSARN 915

Query: 67   NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK-DPCTIQEWNEGKIPLLFAHP 116
            +   +++   F S L           ++     G T  +     ++++  G+  +     
Sbjct: 916  SGRRVLLFSSFTSMLGLIEEQLRTENIRYLKLTGETKKELRHAYVEQFQNGEADVFLISL 975

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL     I++ +  WW+L    Q  +R       + G  + V VY LI +++I
Sbjct: 976  KAGGTGLNLTN-AEIVIHYDPWWNLSAQNQATDR-----AYRIGQTKDVQVYKLIMKDSI 1029

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E +++    K  + D  +N+
Sbjct: 1030 EEKIMKLQERKHILSDTFINS 1050


>gi|228958135|ref|ZP_04119868.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
 gi|228801518|gb|EEM48402.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|309812493|ref|ZP_07706246.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308433548|gb|EFP57427.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
          Length = 1119

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 25/212 (11%)

Query: 2    KQYHK-FQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDE 54
            + Y +  +RE   L   L+  +       +   +  +LA      D+    +      + 
Sbjct: 899  RVYKRHLRREQQRLMGLLKDPDANRVEILAALTRLRRLALDPALVDDEFAGRSVSRKVET 958

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWN 105
             ++ L  I   A     +V   F   LA +++A         +  G T ++    + E+ 
Sbjct: 959  VVQQLAEI--AAEGHRALVFSQFTDFLAIVREAAADAGVSTTYLDGSTRNRQ-QVVDEFK 1015

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+    F    + G GL L     ++V    WW+     Q I+R       + G  + V
Sbjct: 1016 SGEADAFFISLKAGGTGLTLTEADYVIVL-DPWWNPAAEDQAIDR-----AHRIGQTKHV 1069

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  ++  TI+E V++    K  + D +++A
Sbjct: 1070 MVYRYVSAGTIEEKVMELQEKKRKLFDDVVDA 1101


>gi|283798366|ref|ZP_06347519.1| superfamily II DNA/RNA helicase, SNF2 family [Clostridium sp. M62/1]
 gi|291073950|gb|EFE11314.1| superfamily II DNA/RNA helicase, SNF2 family [Clostridium sp. M62/1]
          Length = 1044

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 76/208 (36%), Gaps = 23/208 (11%)

Query: 2    KQY--HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  +  +     +  GE        +   +  Q+        E     +    K++  
Sbjct: 825  KLYGANVLRLRQELEAGGELPGKIQILAGLTRLRQICCDPSLCYEN---YKGESAKLETC 881

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
              ++  A      +++   F S    ++K   +              ++      ++  G
Sbjct: 882  LALLSGAVAAGHRVLLFSQFASMFPIIKKRLDRAGIGCFVLTGATSKEERSRLTAKFYAG 941

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +P+      + G GLNL    ++++ +  WW+     Q  +R       + G K+ V V
Sbjct: 942  DVPVFLISLKAGGTGLNLT-AADVVIHYDPWWNAAAQDQATDR-----AHRIGQKKQVTV 995

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + LI + T++E +L    +KS + + ++
Sbjct: 996  FRLIMKGTVEESILHLQESKSELAERIV 1023


>gi|228914427|ref|ZP_04078038.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
 gi|228845210|gb|EEM90250.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++    +    K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDD---YQGSSAKFEQLLDIL 905

Query: 64   EK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIPL 111
            E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            A  TI+E + +    K  +   ++ 
Sbjct: 1020 AHGTIEEKMHELQEGKKNLIAEVIE 1044


>gi|227893708|ref|ZP_04011513.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
 gi|227864568|gb|EEJ71989.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
          Length = 1180

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 86/211 (40%), Gaps = 27/211 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    ++L   L G+    F  +     ++ +K  ++        E  H K     K+ 
Sbjct: 959  LYQLQTQKLIAQLNGQEETDFKKSRFEIFAQIIKLREICCDPRLLYENYHGK---SNKLI 1015

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
                +I+    N   I++   F S L  LQ    + +            +K    I+E+N
Sbjct: 1016 TTVDLIKTNLENGHKILLFSQFTSMLEILQSKLKKAKIPLFMLTGSTPKEKRQEYIREFN 1075

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P +      + G G+NL    ++++ +  WW+L    Q  +R       + G K +
Sbjct: 1076 TMEQPGVFLISLKAGGTGINLT-SADVVIHYDPWWNLAAENQATDR-----AHRIGQKHS 1129

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY ++ +NTI+E +++  + K+ +   +L
Sbjct: 1130 VKVYKMVTKNTIEERIIKLQQKKAELAQAIL 1160


>gi|296502447|ref|YP_003664147.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296323499|gb|ADH06427.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|228952232|ref|ZP_04114322.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
 gi|228807447|gb|EEM53976.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229079035|ref|ZP_04211586.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
 gi|228704209|gb|EEL56644.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
          Length = 1064

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229819960|ref|YP_002881486.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
 gi|229565873|gb|ACQ79724.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
          Length = 1118

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 23/208 (11%)

Query: 2    KQYHK---FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y +    +R+    L  + +       S   +  QLA      D +         K+ 
Sbjct: 881  RVYDRHLHRERQRVLRLADDLDRNRVEVLSALTRLRQLAIDPTLVDAD---SAAPGSKLD 937

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEWNEG 107
            AL  ++ +A      ++V   F   LA +                T  +    I+ + EG
Sbjct: 938  ALLPLLTEAAAEGHRVLVFSQFTRYLAMIGARLDAAGLAYSYLDGTTRRRDAVIRGFAEG 997

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +  V    WW+    +Q ++R       + G  + V V
Sbjct: 998  TDPVFLISLKAGGVGLNL-AMADYAVLADPWWNPATEEQAVDR-----AHRIGQTKPVMV 1051

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y L+A +TI+E V+     K  +   +L
Sbjct: 1052 YRLVATDTIEEKVMALQGAKRALVAGVL 1079


>gi|77460089|ref|YP_349596.1| SNF2-like [Pseudomonas fluorescens Pf0-1]
 gi|77384092|gb|ABA75605.1| putative helicase [Pseudomonas fluorescens Pf0-1]
          Length = 896

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 29  TVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ 85
            +K  Q+       ++     +     K+ +L  ++E+       I++   F S L+ ++
Sbjct: 696 LLKLRQVCCDLRLVNDATLPARGSTSGKLDSLMEMLEELFEEGRRILLFSQFTSMLSLIE 755

Query: 86  KAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               +         G+T D+    ++E+  GK  +      + G GLNL    + ++ + 
Sbjct: 756 DELKKRNVAYALLTGQTRDRR-TPVKEFQSGKRQIFLISLKAGGVGLNLTE-ADTVIHYD 813

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G ++ VFVY +IA+ T++E +    R KS +   +L+
Sbjct: 814 PWWNPATENQATDR-----AYRIGQEKPVFVYKMIARGTVEEKIQLLQREKSDLAAGVLD 868

Query: 197 ALKK 200
             K 
Sbjct: 869 GRKA 872


>gi|257126260|ref|YP_003164374.1| non-specific serine/threonine protein kinase [Leptotrichia buccalis
            C-1013-b]
 gi|257050199|gb|ACV39383.1| Non-specific serine/threonine protein kinase [Leptotrichia buccalis
            C-1013-b]
          Length = 1172

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 83/212 (39%), Gaps = 21/212 (9%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y K  +                 +   K  Q+ N    + E+   +     K++ L  ++
Sbjct: 956  YIKKAKSEMKKFNENENNRMKILAILTKLRQICNSPTLFKEDYKGEV---AKLEVLRDLL 1012

Query: 64   EK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWNEGKIPL 111
                 N   +++   F   L  ++K          +  G    K+   I  ++N G+  +
Sbjct: 1013 PDITENGHRLLIFSQFVGTLKEIEKELVNMGIEYFYIDGSVKSKERVDICNKFNAGERQV 1072

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G GLNL  G ++++ +  WW++    Q  +R       + G K++V V  L+
Sbjct: 1073 VLISLKAGGTGLNL-VGADVVIHYDPWWNIAVENQASDR-----AYRIGQKKSVQVIKLV 1126

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + TI+E +++    K  + + LL +   E +
Sbjct: 1127 TEGTIEEKIIKIQENKRQLSENLLESKDGEKV 1158


>gi|295100101|emb|CBK89190.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium
           cylindroides T2-87]
          Length = 473

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 21/201 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           +E+   ++  + +     +   K  Q+   A    +     +    KI A   +I+    
Sbjct: 263 KEMQAKMKEVHFDRIAILAMLTKLRQICCDARLVYDN---IKEPSTKINATISLIKTLTE 319

Query: 67  NAAPIIVAYHFNS---------DLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHP 116
           N   I++   F S         D  ++      G T  ++    +  +NE    +     
Sbjct: 320 NNKKILLFSAFTSLLDLVSNQLDKEQISYYMLTGSTNKEERRKLVNNFNEDDTRVFLISL 379

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL      ++    WW+L    Q  +R       + G    V VY +I +++I
Sbjct: 380 KAGGTGLNLT-SAEAVIHIDPWWNLSAQNQATDR-----AHRIGQNANVQVYRMIMKDSI 433

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L+    K+ + D  +  
Sbjct: 434 EEKILKMQERKANLADSFVEG 454


>gi|229074784|ref|ZP_04207799.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
 gi|228708296|gb|EEL60454.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
          Length = 1068

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   TK  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQETKKNLIAEVIE 1048


>gi|313898129|ref|ZP_07831668.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312957157|gb|EFR38786.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 527

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 21/199 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKA 66
           ++L   +Q E ++ F   +   +  ++   A    E      +   K++    ++   + 
Sbjct: 302 QDLQKRMQMEEVDKFQVLAMMTRLREICCDARLLYEN---VTLPSTKLRGCMDLLLNARN 358

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQEWNEGKIPLLFAHP 116
           +   +++   F S L  +++             G T  +     ++++  G+  +     
Sbjct: 359 SGRRVLLFSSFTSMLELIEEQLRVENIRYLKLTGETKKELRHAYVEKFQNGEADVFLISL 418

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL     I++ +  WW+L    Q  +R       + G  + V VY LI ++TI
Sbjct: 419 KAGGTGLNLTN-AEIVIHYDPWWNLSAQNQATDR-----AYRIGQTKDVQVYKLIMKDTI 472

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +++    K  + D  +
Sbjct: 473 EEKIMKLQERKHILSDTFI 491


>gi|229102446|ref|ZP_04233153.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
 gi|228680931|gb|EEL35101.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
          Length = 1068

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   TK  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQETKKNLIAEVIE 1048


>gi|229115289|ref|ZP_04244698.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
 gi|228668121|gb|EEL23554.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
          Length = 1068

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   TK  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQETKKNLIAEVIE 1048


>gi|302335213|ref|YP_003800420.1| SNF2-related protein [Olsenella uli DSM 7084]
 gi|301319053|gb|ADK67540.1| SNF2-related protein [Olsenella uli DSM 7084]
          Length = 1079

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 38/229 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            + Y   ++ L   L  +  EAF        ++ ++  QL      +Y D E         
Sbjct: 856  RLYQAHEQALRVSLSRQTDEAFGRGKIQVLAELMRLRQLCCDPRLLYDDYEGG-----SA 910

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+  +  ++     ++  +++   F S L+ +                     +      
Sbjct: 911  KLATVMDLVGSVVDSSHKMLLFSQFTSYLSLIASELDARGVRYYTITGATPKHRRLELAD 970

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +N  + P+      + G GLNL  G +++V    WW+     Q  +R       + G  
Sbjct: 971  AFNADETPVFLISLKAGGTGLNL-VGASVVVHADPWWNAAAQDQATDR-----AHRIGQT 1024

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--------NALKKETI 203
            R V VY +IA++TI++ +L     KS + + ++        +AL+KE +
Sbjct: 1025 RDVSVYKVIAKDTIEDRILALQEVKSDLAEQVIGVGGGAGLSALRKEDL 1073


>gi|229096334|ref|ZP_04227307.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
 gi|228687294|gb|EEL41199.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
          Length = 1068

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   TK  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQETKKNLIAEVIE 1048


>gi|209696433|ref|YP_002264364.1| putative helicase [Aliivibrio salmonicida LFI1238]
 gi|208010387|emb|CAQ80731.1| putative helicase [Aliivibrio salmonicida LFI1238]
          Length = 1284

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 21/208 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   ++E   +L+  +        +   K  Q+        +    +     K+   + 
Sbjct: 1067 AYEAVRKESLANLKSASSRGVVEVFAALTKLRQICCDVSLVFDS--MQGEASTKLSEAQS 1124

Query: 62   IIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCT-IQEWNEGKI 109
            +IE+A      ++V   F   L R         +  ++  G+   K     I  + +G  
Sbjct: 1125 LIEEALDGDHKVLVFSQFVGVLKRFSAQLTESNISFSYLDGKLSTKQRQAAIDSFKDGTN 1184

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++    WW+     Q  +R       + G ++ V VY 
Sbjct: 1185 SVFLISLKAGGTGLNLTE-ADTVIHIDPWWNPAVEDQASDR-----AYRMGQQKPVTVYR 1238

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+ ++TI+E ++     K  + D +L+A
Sbjct: 1239 LVTKDTIEEKIIALHHDKRDLADQVLSA 1266


>gi|317491226|ref|ZP_07949662.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
 gi|316920773|gb|EFV42096.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
          Length = 1085

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 18/179 (10%)

Query: 29   TVKCLQLANGAVYYDEEKH--WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
             +K  Q+       + EK    KE    ++    +         I++   F   L  + +
Sbjct: 892  LLKLRQVCCDPRLVNLEKAALVKESAKLELLLELLPEMIEEGRRILLFSQFTGMLDLISQ 951

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            A  +         G T D+    +Q +  G++PL      + G GLNL    + ++ +  
Sbjct: 952  ALDKAGIAYVTLTGSTADRH-APVQRFQRGEVPLFLISLKAGGVGLNLT-AADTVIHYDP 1009

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     Q  +R       + G  + VFVY LIA  +I+E ++     K+ + + +L+
Sbjct: 1010 WWNPAAENQATDR-----AHRMGQDKPVFVYKLIAAGSIEEKIVALQDKKAALANSILS 1063


>gi|326329299|ref|ZP_08195624.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325952874|gb|EGD44889.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 907

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 84/215 (39%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIK 57
            Y  F R     ++  + +         S      Q+ N  A +  +E        +KI+
Sbjct: 670 LYEAFVRNAMERIERLDADDPQRRGLVLSLLTGLKQICNHPAQFLKQEAGRITGRSQKIE 729

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
            L+ ++    A +  ++V   + +    L+  +            G  + +    ++ + 
Sbjct: 730 LLDELVSTVLAESGAVLVFTQYVAMARLLEAHWAASGVAHQFLHGGTPVAERSRMVERFQ 789

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG++P+      + G GLNL    + ++    WW+     Q  +R       + G  R V
Sbjct: 790 EGEVPVFLLSLKAGGVGLNLTR-ADHVIHVDRWWNPAVEDQATDR-----AHRIGQTRTV 843

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+ LI Q T++E V + L+ K  + D +L A + 
Sbjct: 844 QVHRLITQGTVEERVAELLQRKRVLADAVLGAGEA 878


>gi|119512991|ref|ZP_01632051.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
 gi|119462365|gb|EAW43342.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
          Length = 1404

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   + EA        ++ +K  +          +    E+   K+
Sbjct: 1182 MAFYEALRRQAISKLTESDAEAGKKHLQVLAEIMKLRRACCNPSLVMPD---TELPSSKL 1238

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            +    ++ +   N    +V   F   L  ++    Q             + +    +  +
Sbjct: 1239 QLFGEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTPVAERKKRVDAF 1298

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   +      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1299 QAGTGDVFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQQRP 1352

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+A++TI++ ++     K  + D LL  
Sbjct: 1353 VTIYRLVAKDTIEDKIVALHHHKRDLADTLLEG 1385


>gi|226360588|ref|YP_002778366.1| helicase [Rhodococcus opacus B4]
 gi|226239073|dbj|BAH49421.1| putative helicase [Rhodococcus opacus B4]
          Length = 934

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    +          +  S      Q+ N  A Y  +E        +KI  L
Sbjct: 702 LYEALVREAMERIATSEGIGRRGSIVSLLTGLKQICNHPAQYLGQEHAALTGRSQKIGLL 761

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           + +I+   A     +V  HF +    L++              G ++      ++ +  G
Sbjct: 762 DELIDTNLAEGGRSLVFTHFATMGRLLRRHLTTRGVTCEFLHGGTSVAAREELVERFQSG 821

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +P+L     + G GLNL    + +V F  WW+     Q  +R       + G    V V
Sbjct: 822 DVPVLILSLKAAGTGLNLTR-ADHVVHFDRWWNPAVEDQATDR-----AYRIGQTHPVVV 875

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + L+   TI+E +   L +K  + D +L+
Sbjct: 876 HRLVTAGTIEEHIAAMLASKRQLADSVLS 904


>gi|229160810|ref|ZP_04288801.1| Helicase, SWF/SNF [Bacillus cereus R309803]
 gi|228622658|gb|EEK79493.1| Helicase, SWF/SNF [Bacillus cereus R309803]
          Length = 1068

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 908

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 909  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGD 968

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 969  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1022

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1023 VAHGTIEEKMHELQESKKNLIAEVIE 1048


>gi|319652149|ref|ZP_08006268.1| helicase [Bacillus sp. 2_A_57_CT2]
 gi|317396138|gb|EFV76857.1| helicase [Bacillus sp. 2_A_57_CT2]
          Length = 1072

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 27/214 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      + +     +    K
Sbjct: 849  KLYAAYLAKLREDTLKHLNKDTLRKNRIRILAGLTRLRQICCHPALFVDG---YKGSSAK 905

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QE 103
             + L+ IIE++  +   +++   F   L  + +          +  G+    +   I + 
Sbjct: 906  FEQLKRIIEESRLSGRRVLIFSQFTKMLDLIGRELALLDLPFFYLDGQIPSAERVEICRR 965

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+         + G GLNL  G + ++ + LWW+    +Q  +R       + G K 
Sbjct: 966  FNEGERDFFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAADR-----AHRIGQKN 1019

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  L+++ TI+E + +    K  + + ++++
Sbjct: 1020 TVQVIKLLSRGTIEEKMNELQDKKKNLIEEIIDS 1053


>gi|257869721|ref|ZP_05649374.1| Snf2 family protein [Enterococcus gallinarum EG2]
 gi|257803885|gb|EEV32707.1| Snf2 family protein [Enterococcus gallinarum EG2]
          Length = 1074

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 89/217 (41%), Gaps = 26/217 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  + R++  ++   +  AF     +  +   +  Q+      + E+    E    K+
Sbjct: 849  KIYLAYLRQMREEIAQMDTAAFRKNRISILAGLTRLRQICCDPRLFVED---YEGTSGKL 905

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            + ++ +I+ A  N   +++   F S L+ +++   Q               +    +  +
Sbjct: 906  EQVKDLIQAAKENGRRVLLFSQFTSMLSIIEEELAQEGIETFYLRGSTPPQERLSMVDAF 965

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K+ 
Sbjct: 966  NNGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAAGR-----AHRIGQKKV 1019

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V V+ +IA+ TI+E +    + K  +   ++   + +
Sbjct: 1020 VEVWRMIAEGTIEERMDALQQEKRELFQKVIQGNEAQ 1056


>gi|154508745|ref|ZP_02044387.1| hypothetical protein ACTODO_01253 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798379|gb|EDN80799.1| hypothetical protein ACTODO_01253 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1043

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 21/207 (10%)

Query: 3    QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            QY   +R    DL +  +    +  +   +  QLA      +E   +  V   KI+ L  
Sbjct: 829  QYLARERARILDLLRDVDANRMSVLAAITRLRQLALDPALVEES--YAHVGSAKIEYLAD 886

Query: 62   IIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIP 110
             +++        +V   F S L R++              G T  +    I+++  G   
Sbjct: 887  RLDEIVPLGHQALVFSQFTSFLERIRHMLERRGISAVQLDGSTRGRAE-VIEKFRSGDAQ 945

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GL L     + V    WW+    +Q I+R       + G  + V VY +
Sbjct: 946  VFLISLKAGGSGLTLTEADYVYVM-DPWWNPAAEEQAIDR-----AHRIGQMKKVNVYRM 999

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A +TI+  V++    K  +   ++N 
Sbjct: 1000 VATDTIEAKVVELQDRKRQLISSVMNG 1026


>gi|293192909|ref|ZP_06609753.1| putative helicase [Actinomyces odontolyticus F0309]
 gi|292819965|gb|EFF78964.1| putative helicase [Actinomyces odontolyticus F0309]
          Length = 1043

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 21/207 (10%)

Query: 3    QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            QY   +R    DL +  +    +  +   +  QLA      +E   +  V   KI+ L  
Sbjct: 829  QYLARERARILDLLRDVDANRMSVLAAITRLRQLALDPALVEES--YAHVGSAKIEYLAD 886

Query: 62   IIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIP 110
             +++        +V   F S L R++              G T  +    I+++  G   
Sbjct: 887  RLDEIVPLGHQALVFSQFTSFLERIRHMLERRGISAVQLDGSTRGRAE-VIEKFRSGDAQ 945

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GL L     + V    WW+    +Q I+R       + G  + V VY +
Sbjct: 946  VFLISLKAGGSGLTLTEADYVYVM-DPWWNPAAEEQAIDR-----AHRIGQMKKVNVYRM 999

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A +TI+  V++    K  +   ++N 
Sbjct: 1000 VATDTIEAKVVELQDRKRQLISSVMNG 1026


>gi|94264348|ref|ZP_01288140.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93455242|gb|EAT05455.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 1285

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 21/208 (10%)

Query: 3    QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
             Y   +R+     + Q E        S  +K  +          E +     H+   K +
Sbjct: 1069 LYEALRRQALRNLEQQDEQRAPLKILSAIMKLRRACCHPRLVLPESNLPCAKHELFSKVV 1128

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEGKI 109
              ++E  N   I+V   F   L  +++             G T        ++++  G  
Sbjct: 1129 SELLE--NGHRILVFSQFVDHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK 1186

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L      + G GLNL  G + ++    WW+    QQ  +R       + G  R V VY 
Sbjct: 1187 DLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQQASDR-----AHRIGQDRPVTVYR 1240

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI  NTI+E +L   + K  +   LL+ 
Sbjct: 1241 LITSNTIEEKILSLHQRKRNLAGDLLDG 1268


>gi|269119290|ref|YP_003307467.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613168|gb|ACZ07536.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 1125

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 8    QRELYCDLQGENIEAFNSA--SKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
            ++E+  +++ E +        S   +  Q+     ++ D   H     +   +  + +I 
Sbjct: 912  KKEIENEIKNEKLSRSQIKIFSLLTRLRQICCHPKLFIDNYAHSSGKFETLFELFDDLIS 971

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFA 114
              +    +V   F + L  +     +         G    +D    +  +N G  P+   
Sbjct: 972  GNHKT--LVFSQFTTMLKLISGELKKKGIEHFYLDGSMKARDRLELVNSFNAGNTPIFLI 1029

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++    WW+     Q  +R       + G K +V V  LI + 
Sbjct: 1030 SLKAGGTGLNLT-GSDTVIHVDPWWNPSVENQASDR-----SHRIGQKNSVQVIKLITKG 1083

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +++    K  + D +L +
Sbjct: 1084 TIEEKIMKLQNKKKKLIDNVLTS 1106


>gi|228920559|ref|ZP_04083904.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
 gi|228839189|gb|EEM84485.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
          Length = 1064

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+    A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGN 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|229029537|ref|ZP_04185617.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
 gi|228731736|gb|EEL82638.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
          Length = 1064

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLEI 904

Query: 63   IEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-QEWNEGKIP 110
            +E+  +    I++   F   L           +   +  G T  ++   +   +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCDRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+E + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|225352246|ref|ZP_03743269.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157493|gb|EEG70832.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1158

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 30/223 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     ++      VY D +         
Sbjct: 936  KLYAAHEQRLRATLTKTKDADFNTKKIRILAEFTLLREICCDPRLVYADAKN-----ASA 990

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
            K+ A+  ++      +  ++V   F S L  +     +               +    + 
Sbjct: 991  KLDAICELVSTCMDESKKVLVFSQFTSFLDLIGTRLAEQGVDFYTITGETPKKRRVELVD 1050

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   +P+      +   GLNL  G +++V    WW+     Q  +R       + G  
Sbjct: 1051 EFNGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQNQATDR-----AHRIGQT 1104

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY ++A++TI+E +L+    KS +     +      +  
Sbjct: 1105 QDVNVYQIVAKDTIEERILKLQEKKSELAQQFTDGTASGGVGT 1147


>gi|309800861|ref|ZP_07694993.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
            JCVIHMP022]
 gi|308222397|gb|EFO78677.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1277

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     +L      VY D +         
Sbjct: 1055 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKNG-----SA 1109

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
            K++A++ ++         +++   F S L  +            A        K    + 
Sbjct: 1110 KLEAIDDLVVNCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVD 1169

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   +P+      +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1170 EFNGDDVPVFLISLKAGNTGLNL-VGASVVIHADPWWNEAAQNQATDR-----AHRIGQT 1223

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1224 QDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1258


>gi|306822587|ref|ZP_07455965.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304554132|gb|EFM42041.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 1286

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     +L      VY D +         
Sbjct: 1064 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKNG-----SA 1118

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
            K++A++ ++         +++   F S L  +            A        K    + 
Sbjct: 1119 KLEAIDDLVVNCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVD 1178

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N   +P+      +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1179 EFNGDDVPVFLISLKAGNTGLNL-VGASVVIHADPWWNEAAQNQATDR-----AHRIGQT 1232

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1233 QDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1267


>gi|325964972|ref|YP_004242878.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
 gi|323471059|gb|ADX74744.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
          Length = 1144

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+  A   D       V   K+ 
Sbjct: 924  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDASLVDPS--LSAVRSSKLD 981

Query: 58   ALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
             L   +E   A     ++   F           D  +++  +  G T ++    + E+  
Sbjct: 982  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLDEEKIEYCYLDGGTRNR-ADVVNEFKN 1040

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + +     WW+     Q ++R       + G  R V 
Sbjct: 1041 GSAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPASEAQAVDR-----THRIGQARNVM 1094

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A++TI+E V+     KS +   ++  
Sbjct: 1095 VYRLVAKDTIEEKVMALKARKSQLFSDVMEG 1125


>gi|269796289|ref|YP_003315744.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098474|gb|ACZ22910.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter keddieii
            DSM 10542]
          Length = 1227

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 19/205 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y + +R     L  E  E      +++  L+ A+  V   + +H ++V   K++ L  +
Sbjct: 1012 AYLQRERTKVLGLVDEFGEHRFEVFRSLTVLRQASLDVSLVDAEH-EKVPSSKLEVLYEM 1070

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            ++   A    ++V   F   L R++          ++  GRT  +   TI+ +  G+  +
Sbjct: 1071 LDDILAEGHSVLVFSQFTQFLGRVRAHLDRKDVDYSYLDGRTR-RRAETIERFTSGETKV 1129

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    +  +    WW+     Q ++R       + G  R V VY ++
Sbjct: 1130 FLISLKAGGFGLNLT-AADYCILLDPWWNPAAEAQAVDR-----AHRIGQTRNVNVYRMV 1183

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            + +TI+E V+    +KS +   +L+
Sbjct: 1184 STDTIEEKVMALKASKSKLFASVLD 1208


>gi|302548243|ref|ZP_07300585.1| SNF2/helicase domain protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465861|gb|EFL28954.1| SNF2/helicase domain protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 554

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G +  A             Q+ N  A +  E++        K++ L
Sbjct: 327 LYEAVVREILAEIAGADGLARRGLIVKLLTGLKQICNHPAQFLKEDRPVVPGRSGKLELL 386

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
           + +++   A  A ++V   +    AR+ +A    R            + +    ++ + +
Sbjct: 387 DELLDTILAEGASVLVFTQYVQM-ARILEAHLTARGVPLQLLHGGTPVARREEMVRRFQD 445

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+ P+      + G GLNL   G+ +V +  WW+     Q  +R       + G  + V 
Sbjct: 446 GEAPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEAQATDR-----AYRIGQTQPVQ 499

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LI + T+++ +   L  K  + D +L + + 
Sbjct: 500 VHRLITEGTVEDRIAAMLERKRELADAVLGSGEA 533


>gi|125974243|ref|YP_001038153.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714468|gb|ABN52960.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 375

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 26/206 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    + GE +    + +K +   QL +  +Y          +  K + L+ 
Sbjct: 192 KEYKKFKKDRVITIDGETLAGDTALTKLLYLRQLTS--IY----------NSNKHQVLKD 239

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK-AFPQGRTL---DKDPCTIQEWNEGKIPLLFAHPA 117
           I E +N    ++ Y+F  +   ++   F   R +   + D   ++ +      +      
Sbjct: 240 IFESSNDR-FVIFYNFKREFEIIKNICFKIDRPISYINGDGTDLENYENKSNSITLVQYQ 298

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G+NLQ   N +++FSL    E   Q  +RI      + G  R  F YYLI +N+I+
Sbjct: 299 AGASGVNLQK-ANRIIYFSLPLSSEFWMQSKKRI-----HRIGQNRTCFYYYLITENSIE 352

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L+ L+ +    D  +   +KE +
Sbjct: 353 EKILEVLKQRR---DFTVELFEKEML 375


>gi|307705331|ref|ZP_07642193.1| SNF2 family N-terminal domain protein [Streptococcus mitis SK597]
 gi|307621118|gb|EFO00193.1| SNF2 family N-terminal domain protein [Streptococcus mitis SK597]
          Length = 1048

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 23/207 (11%)

Query: 9    RELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            +E+      + I+       +   +  Q+ N    + E+    +    K+ +L  +++  
Sbjct: 836  QEMVAGASADEIKRHKIEILAGLTRLRQICNTPALFLED---YKGDSGKMDSLFELLDTI 892

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFA 114
            +   +  ++   F S L  +++   +              DK    +  +N+G+      
Sbjct: 893  REKGSRPLIFSQFTSMLDLIEQELEKKEMSHFKITGQTPSDKRQEMVNLFNQGEKDCFLI 952

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G  + V VY LI   
Sbjct: 953  SLKAGGTGLNLT-GADTVILCDLWWNPAVEMQAISR-----SHRLGQTKQVDVYRLITLG 1006

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            TI+E + +   +K  + + +L   +  
Sbjct: 1007 TIEEKIQELQESKKELFNTVLEGQESR 1033


>gi|283456215|ref|YP_003360779.1| helicase [Bifidobacterium dentium Bd1]
 gi|283102849|gb|ADB09955.1| Helicase [Bifidobacterium dentium Bd1]
          Length = 1274

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     +L      VY D +         
Sbjct: 1052 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKNG-----SA 1106

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
            K++A++ ++         +++   F S L  +            A        K    + 
Sbjct: 1107 KLEAIDDLVANCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVD 1166

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N    P+      +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1167 EFNGDDAPVFLISLKAGNTGLNL-VGASVVIHADPWWNEAAQNQATDR-----AHRIGQT 1220

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1221 QDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1255


>gi|323359978|ref|YP_004226374.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
 gi|323276349|dbj|BAJ76494.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
          Length = 983

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE 64
           + +R+    L  +         +++  L++   A    +++    +   K+  L E ++E
Sbjct: 770 QRERQKVLGLLDDLDRQRFIVFRSLTLLRMLALAPSLVDDRDA-HLGSAKLDVLLERLVE 828

Query: 65  -KANAAPIIVAYHFNSDL----ARLQKAFPQGRTLD----KDPCTIQEWNEGKIPLLFAH 115
             A     +V   F S L     RL  A      LD    +    +  +  G+ P+    
Sbjct: 829 VTAEGHRALVFSQFTSFLDMAAERLDAAGLAYAHLDGSTARRGDVVAGFRAGEAPVFLIS 888

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GL L     + V    WW+     Q I+R       + G  ++VFVY LIA  T
Sbjct: 889 LKAGGFGLTLTEADYVFVL-DPWWNPAAEAQAIDR-----AHRIGQDKSVFVYRLIAAGT 942

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           I+E VL   R K+ + D +++
Sbjct: 943 IEEKVLALQRRKAALFDAVID 963


>gi|295319060|gb|ADF99437.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. 230613]
          Length = 1050

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKS 188
             V V  LIA+ TI+E + +    K 
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKITTKKE 1046


>gi|159898290|ref|YP_001544537.1| non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159891329|gb|ABX04409.1| Non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1055

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 23/210 (10%)

Query: 2    KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            ++Y    R +   L  +              ++  Q+ N     +        H  K   
Sbjct: 837  QRYRDQYRAMLLSLIDDQGINDSRIKVLEGLLRLRQICNHPQLVEAT---FRGHSAKFDQ 893

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEG 107
            L   +E   A     ++   F   L  L           A+  G+T ++     +   + 
Sbjct: 894  LLETLEVLHAEGHKALIFSQFVQMLTLLWKELDRRNLSYAYLDGKTNNRAAVVDRFQTDP 953

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I        + G GLNL    + ++    WW+    QQ  +R       + G  + VF+
Sbjct: 954  QIHFFLISLKAGGVGLNLT-AADYVIHIDPWWNPAVEQQATDR-----THRIGQDKPVFI 1007

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI +N+++E +LQ    K  + + ++ +
Sbjct: 1008 YKLIVRNSVEEKILQLQERKRALANNIITS 1037


>gi|260890109|ref|ZP_05901372.1| hypothetical protein GCWU000323_01271 [Leptotrichia hofstadii
           F0254]
 gi|260860132|gb|EEX74632.1| putative SNF2 family N- domain protein [Leptotrichia hofstadii
           F0254]
          Length = 988

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 21/205 (10%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K  +                 +   K  Q+ N    + E+   +     K++ L  ++
Sbjct: 772 YIKKAKSEMKKFNENENNRMKILAILTKLRQICNSPTLFKEDYKGEV---AKLEVLRDLM 828

Query: 64  EK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWNEGKIPL 111
                N   +++   F   L  ++K             G    K+   I  ++N G+  +
Sbjct: 829 PDIIENGHRLLIFSQFVGTLKEIEKELENMGIEYFYIDGSVKSKERVDICNKFNAGERQV 888

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G GLNL  G ++++ +  WW++    Q  +R       + G K++V V  L+
Sbjct: 889 VLISLKAGGTGLNL-VGADVVIHYDPWWNIAVENQASDR-----AYRIGQKKSVQVIKLV 942

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +++   +K  + + LL 
Sbjct: 943 TEGTIEEKIIKIQESKRKLSENLLE 967


>gi|310828799|ref|YP_003961156.1| hypothetical protein ELI_3224 [Eubacterium limosum KIST612]
 gi|308740533|gb|ADO38193.1| hypothetical protein ELI_3224 [Eubacterium limosum KIST612]
          Length = 573

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 85/224 (37%), Gaps = 31/224 (13%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWKEVH 52
           + Y    ++   +L     + A +  ++ ++  Q+  G V  D E             + 
Sbjct: 349 RAYRDLVKDSIAELDNLPAVTAQHVITQLLRLSQICGGFVKLDTEGYENDPNAGKLIPIS 408

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD 97
             KIK  E ++          ++V   F +++  L++   +                D  
Sbjct: 409 KAKIKLFEELLGDLLSVEGKKVVVFARFTAEIKLLREVLEKQLGADGYRMIDGSVPKDVR 468

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++++     I +  A   + G G+ L    +  V++S  +    ++Q   R      
Sbjct: 469 GEYVEDFQKNPAIRVFLAQIQTAGLGITLT-AADTTVYYSTDYSYAAYEQSRAR-----T 522

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G K      +L+ ++T+DE +L+ L  K +I DL ++  +K
Sbjct: 523 HRIGQKNNCTYIHLVVKDTVDEKILEALSQKKSIADLCVDNYQK 566


>gi|171742723|ref|ZP_02918530.1| hypothetical protein BIFDEN_01837 [Bifidobacterium dentium ATCC
            27678]
 gi|171278337|gb|EDT45998.1| hypothetical protein BIFDEN_01837 [Bifidobacterium dentium ATCC
            27678]
          Length = 1283

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L       FN+      ++     +L      VY D +         
Sbjct: 1061 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKNG-----SA 1115

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
            K++A++ ++         +++   F S L  +            A        K    + 
Sbjct: 1116 KLEAIDDLVANCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVD 1175

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N    P+      +   GLNL  G ++++    WW+     Q  +R       + G  
Sbjct: 1176 EFNGDDAPVFLISLKAGNTGLNL-VGASVVIHADPWWNEAAQNQATDR-----AHRIGQT 1229

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1230 QDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1264


>gi|227495218|ref|ZP_03925534.1| SNF2 family superfamily II DNA/RNA helicase [Actinomyces coleocanis
            DSM 15436]
 gi|226831670|gb|EEH64053.1| SNF2 family superfamily II DNA/RNA helicase [Actinomyces coleocanis
            DSM 15436]
          Length = 1048

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 23/217 (10%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y ++    ++EL    +  + + F   +   +  QLA      +++K W E    K +
Sbjct: 832  KTYDRYLNQHRKELLALAEDTHSQGFKIITGLNQLRQLALDPQLVEKDKDWPE--SAKTQ 889

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEG 107
            AL  ++   +A     +V   + S L R++ A  +             K    I+ +   
Sbjct: 890  ALIDLLLPLQAEGKKSLVFSQYTSYLQRIRTALNEAGITTSYLDGGTQKRGEVIENFKHS 949

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GL L    N+ +    WW+     Q I+R       + G +  V V
Sbjct: 950  DTNVFLISLKAGGTGLTLTEAENVFIL-DPWWNPATENQAIDR-----AHRIGQENTVNV 1003

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
            Y L + +TI+E V+     K  + D ++   +K  +I
Sbjct: 1004 YRLCSADTIEEKVMALQVHKRQVADAIIGEEVKALSI 1040


>gi|254443939|ref|ZP_05057415.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198258247|gb|EDY82555.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 799

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 41/226 (18%)

Query: 5   HKFQRELYCDLQGENIE------------------------AFNSASKTVKCLQLANGAV 40
            + +++++CDL+GE  +                        AFN     ++  Q+     
Sbjct: 561 DRIEKDIFCDLEGEQRKRYDLELDEARAMLKSAKEGGQSTGAFNVLQALLRLRQICCDPE 620

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------P 89
             D     ++V   K++AL  ++E   A    ++V   F S L   ++            
Sbjct: 621 LLDTSGDREDVESAKMQALLDLLEPLVAEGHKVLVFSQFVSLLEIAERELHAIGIGSLKL 680

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G+T  +           +  +      + G GL L    + +V    WW+     Q I+
Sbjct: 681 TGKTKRRGELVEHFQKGNEEQVFLLSLKAAGSGLTLT-AASYVVLLDPWWNPAVEAQAID 739

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + G K  V  Y ++A++T++E + +    KS +   L 
Sbjct: 740 R-----AHRIGQKDQVIAYRILAKDTVEEKIRKIQAEKSELAAALF 780


>gi|163795414|ref|ZP_02189381.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159179400|gb|EDP63931.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1385

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1167 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQD---AGVPSGKLAAF 1223

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD-PCTIQEWNEG 107
              +++    N    +V   F + LA          ++  +  G T   D    +  +  G
Sbjct: 1224 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1283

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+     Q  +R+      + G +R V +
Sbjct: 1284 TADVFLISLRAGGTGLNLT-AADYVVHLDPWWNPAVEDQASDRV-----HRIGQERPVTI 1337

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI Q++I+E +L+  R K  +   +L  
Sbjct: 1338 YRLIMQDSIEEQILRLHRDKRDLAADILEG 1367


>gi|258650324|ref|YP_003199480.1| SNF2-like protein [Nakamurella multipartita DSM 44233]
 gi|258553549|gb|ACV76491.1| SNF2-related protein [Nakamurella multipartita DSM 44233]
          Length = 1141

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 24/179 (13%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLAR---- 83
              QL+      DE   ++++   K++        I+E      ++V   F   LAR    
Sbjct: 952  LRQLSLDPSLVDES--YRDIPSSKLEVAIDRICEIVES--GHRVLVFSQFTRFLARARDQ 1007

Query: 84   -----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 +      GRT D+    ++ +  G  P+      + G GLNL    +  +    W
Sbjct: 1008 LHHLGIAHCLLDGRTKDR-SAVVEAFRTGVAPVFLISLKAGGFGLNLTE-ADYCILLDPW 1065

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q I+R       + G  + V VY  +A+ TI+E V+     K+ + D +L A
Sbjct: 1066 WNPAAEAQAIDR-----AHRIGQTKNVIVYRYVARGTIEEKVMALKAGKAKLFDDVLGA 1119


>gi|163796791|ref|ZP_02190749.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159178045|gb|EDP62592.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1385

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1167 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQD---AGVPSGKLAAF 1223

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD-PCTIQEWNEG 107
              +++    N    +V   F + LA          ++  +  G T   D    +  +  G
Sbjct: 1224 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1283

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+     Q  +R+      + G +R V +
Sbjct: 1284 TADVFLISLRAGGTGLNLT-AADYVVHLDPWWNPAVEDQASDRV-----HRIGQERPVTI 1337

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI Q++I+E +L+  R K  +   +L  
Sbjct: 1338 YRLIMQDSIEEQILRLHRDKRDLAADILEG 1367


>gi|281415208|ref|ZP_06246950.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Micrococcus
           luteus NCTC 2665]
          Length = 630

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 30/213 (14%)

Query: 2   KQYHK-FQRE------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y +  QRE      L  D+ G     F S +       LA      D+   +  V   
Sbjct: 403 KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTL---LRMLALAPQIVDD--QYASVPSS 457

Query: 55  KIKA-LEVIIEK-ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQE 103
           K++  L+ + E       +IV   F S L           ++ A+  G T  +    I+ 
Sbjct: 458 KLERFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGR-ADVIRG 516

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + EG+ P+      + G GL L    + +     WW+     Q ++R       + G +R
Sbjct: 517 FREGEAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAAEAQAVDR-----AHRIGQER 570

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY L+++ TI+E VL+    K+ +   L++
Sbjct: 571 TVMVYRLVSEGTIEEKVLELQWRKAELFGALMD 603


>gi|326317215|ref|YP_004234887.1| SNF2-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374051|gb|ADX46320.1| SNF2-related protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 947

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 22/200 (11%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
             + +G            +K  Q+               +   K+  L  ++    A   
Sbjct: 703 VLERRGFEGGLITILDALLKLRQVCCDPRLVKGLPDAHGMESAKLDRLAELLPALVAEGR 762

Query: 70  PIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN----EGKIPLLFAH 115
            ++V   F   L    +                   +    ++ +     EG  P+L A 
Sbjct: 763 RVLVFSQFTGMLELAGQRLDALGLTWLALTGATAPRQRASVVRCFQDPSAEGSAPILLAS 822

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    + +V    WW+    +Q   R       + G  + VFV++L+A+ +
Sbjct: 823 LKAGGTGLNLT-AADTVVHLDPWWNPAVMEQASAR-----AHRIGQDKPVFVHHLVAEGS 876

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E +L+    K  + D +L
Sbjct: 877 IEERMLELQARKQALADGVL 896


>gi|94309439|ref|YP_582649.1| SNF2-like protein [Cupriavidus metallidurans CH34]
 gi|93353291|gb|ABF07380.1| Superfamily II DNA/RNA helicase, SNF2 family [Cupriavidus
            metallidurans CH34]
          Length = 1025

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
            +  ++ ++  + A        +         K++A   +     AN    +V   F   L
Sbjct: 825  HVLAQLMRMRRAACDPRLVTPD---VGQPGAKVRAFAELAATLAANGHKTLVFSQFVDFL 881

Query: 82   ARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              L++A                  +    +  +  G+  +      + G GLNL    + 
Sbjct: 882  QMLRQALVDAGLAWQYLDGATPAGERTRRVAAFQAGEGDVFLISLKAGGFGLNLT-AADY 940

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +V    WW+     Q + R       + G +R V VY LIA  TI+E ++   + K  + 
Sbjct: 941  IVIADPWWNPAAEDQAMGR-----AHRIGQQRPVTVYRLIAAGTIEERIVDLHQGKRALA 995

Query: 192  DLLLNALKKETIH 204
            D +L+A+  E I 
Sbjct: 996  DGVLDAMDGEAIG 1008


>gi|260905640|ref|ZP_05913962.1| DNA/RNA helicase, superfamily II, SNF2 family protein
           [Brevibacterium linens BL2]
          Length = 1012

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 23/209 (11%)

Query: 2   KQYH---KFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           K Y    + +R+          +       +++  L++        + +H + VH  K+ 
Sbjct: 781 KLYDRVLQKERKKILGFIDSEYDKQRFIVFRSLTLLRMLALDPRIVDGEH-EGVHSSKLA 839

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNE 106
           AL   +E   A     IV   F S L ++ +             G T ++    + E+  
Sbjct: 840 ALMERLEDVVAEGHRSIVFSQFTSFLDKVAEDLDRRGVPYVVLDGSTRNR-GQVVDEFRS 898

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GLNL    + +     WW+     Q I+R       + G  + V 
Sbjct: 899 GAAPVFLISLKAGGFGLNLTE-ADYVFLMDPWWNPATENQAIDR-----AHRIGQTKNVM 952

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY  +A+ TI+E VL   + K+ + D L+
Sbjct: 953 VYRYVAEGTIEEKVLALQKKKAELFDSLM 981


>gi|169832962|ref|YP_001694930.1| Snf2 family protein [Streptococcus pneumoniae Hungary19A-6]
 gi|168995464|gb|ACA36076.1| Snf2 family protein [Streptococcus pneumoniae Hungary19A-6]
          Length = 1032

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ Q 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTQG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|149200479|ref|ZP_01877493.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
 gi|149136441|gb|EDM24880.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
          Length = 1021

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 25/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y         D+  +   AF+       S   +  Q  +      EE   KE+   K +
Sbjct: 800  LYKNIAENFLQDILQDQ-TAFSKRRLDILSLITRLRQTCSHPALLPEEFKAKEIESSKFQ 858

Query: 58   ALEVIIEKANA--APIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
              + ++E+        +V   F S L+          ++  +  G T  +    + ++NE
Sbjct: 859  LFQELVEEIRDSSHRALVFSQFTSMLSLMREWLDEQGIKYCYLDGSTKKRQ-DLVDQFNE 917

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               I        + G GLNL  G + ++ +  WW+     Q  +R       + G  R V
Sbjct: 918  DDSIQFFLLSLKAGGTGLNLT-GADTVIHYDNWWNPMVVNQASDR-----AHRIGQTRNV 971

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  L+AQNTI++ ++Q  +TK  + D L+  
Sbjct: 972  NIIKLVAQNTIEDKIIQLQKTKEKLFDQLVEG 1003


>gi|307127728|ref|YP_003879759.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            670-6B]
 gi|306484790|gb|ADM91659.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            670-6B]
          Length = 1032

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPSKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|163798351|ref|ZP_02192275.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159176371|gb|EDP60962.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1048

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 830  YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQD---AGVPSGKLAAF 886

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD-PCTIQEWNEG 107
              +++    N    +V   F + LA          ++  +  G T   D    +  +  G
Sbjct: 887  LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 946

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+     Q  +R       + G +R V +
Sbjct: 947  TADVFLISLRAGGTGLNLT-AADYVVHLDPWWNPAVEDQASDR-----AHRIGQERPVTI 1000

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI Q++I+E +L+  R K  +   +L  
Sbjct: 1001 YRLIMQDSIEEQILRLHRDKRDLAADILEG 1030


>gi|51244847|ref|YP_064731.1| helicase [Desulfotalea psychrophila LSv54]
 gi|50875884|emb|CAG35724.1| probable helicase [Desulfotalea psychrophila LSv54]
          Length = 1399

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 4    YHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   ++     L+G            ++ +K  Q        D+      +   K+K   
Sbjct: 1180 YEALRQNALDILEGNKDRKGRHLQILTEIMKLRQACCNPRLIDKN---TSISSSKMKVFG 1236

Query: 61   VIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCTIQEWNEGK 108
             ++E+        +V   F   L  +++   +         G T  K     + ++  GK
Sbjct: 1237 DVVEELLGGNHKALVFSQFIGHLHIIREYLDERGISYQYLDGSTSSKMREKGVNDFQAGK 1296

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L      + G GLNL    + ++    WW+     Q  +R       + G  R V VY
Sbjct: 1297 GDLFLISLKAGGLGLNLT-AADYVLHMDPWWNPAIEDQASDR-----AHRIGQTRPVTVY 1350

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+++N+I+E +++  + K  +   LL  
Sbjct: 1351 RLVSKNSIEEKIVKLHQEKRDLAGSLLEG 1379


>gi|307708395|ref|ZP_07644861.1| Snf2 family protein [Streptococcus mitis NCTC 12261]
 gi|307615494|gb|EFN94701.1| Snf2 family protein [Streptococcus mitis NCTC 12261]
          Length = 804

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9   RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--E 64
           R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 588 RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLLQV 644

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                 +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 645 ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 704

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 705 SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQEETVEVYRLVTRG 758

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKET 202
           TI+E + +    K  +   +L+  +   
Sbjct: 759 TIEEKIQELQEQKKHLVSQVLDGTESRG 786


>gi|326803590|ref|YP_004321408.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650654|gb|AEA00837.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 970

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 25/211 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  +  ++   L+  ++   +      +   +  Q+       + +    +    K +
Sbjct: 745 AVYLAYLEDIRDRLKDNDVNGSHKHMEMLAAITRLRQICCHPALVNSD---YQGTSGKFE 801

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRT-LDKDPCTIQEWN 105
             + ++E+A  N   I+V   F S LA +Q    Q         G+T  +K    +  +N
Sbjct: 802 YFKRMLERALSNHRRILVFSQFTSMLAIMQDYLDQEAINYFIIEGKTNKEKRQDQVNRFN 861

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+  +      + G G+NL  G + +  + LWW+    +Q I R       + G  + V
Sbjct: 862 QGEGSVFLISLRAGGVGINLT-GADTVFLYDLWWNPSVEEQAIGR-----AHRIGQTKDV 915

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY  I + TI+E + +    K  + D L  
Sbjct: 916 EVYRFITEGTIEERIAELQEEKRHLFDELFQ 946


>gi|260907213|ref|ZP_05915535.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Brevibacterium
            linens BL2]
          Length = 1132

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL----EV 61
            + +R+    L  +      +  +++  L++     Y  +EK ++ +   K+ AL    + 
Sbjct: 919  QKERKKLLGLINDMDRNRFAIFRSLTLLRMLAIDPYLIDEK-YEAIGSSKLSALFSHLDD 977

Query: 62   IIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            II  A     I+   F S L+R         +   +  G T ++    I ++  G+ P+ 
Sbjct: 978  II--AEGHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNR-GAVIDDFRAGEAPIF 1034

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GL L    + +     WW+     Q ++R       + G  + V VY +++
Sbjct: 1035 LISLKAGGFGLTLTE-ADYVFLLDPWWNPAVEAQAVDR-----AHRIGQTKNVMVYRMVS 1088

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E VL     K+ + D L+N
Sbjct: 1089 EKTIEEKVLALQERKAQLFDSLVN 1112


>gi|326381641|ref|ZP_08203335.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199888|gb|EGD57068.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 1154

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 28/213 (13%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y  +    +++L   L+  +           +  QL+   V  D E     V+  KI+
Sbjct: 933  KVYDTYLARDRQQLLGLLENFDGNRIQVLRALTRLRQLSLHPVLVDGEH--ANVNSAKIE 990

Query: 58   ALEV----IIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCTIQE 103
             L      +I++      +V   F   L  +               G T + K    I++
Sbjct: 991  YLSEQLPMLIDE--GHSALVFSSFTGFLKLIAGRLDAEDIPYSYLDGSTAITKRAKQIEQ 1048

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + +G+  +      + G GLNL    +       WW+     Q ++R       + G  R
Sbjct: 1049 FTDGRTRVFLISLKAGGFGLNLT-AADYCFMTDPWWNPAAEAQAVDR-----AHRIGQHR 1102

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            AV VY +++  TI+E V+     K  + D LL+
Sbjct: 1103 AVTVYRMVSTGTIEEKVIDLQTRKRELFDALLD 1135


>gi|323487763|ref|ZP_08093021.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
 gi|323398497|gb|EGA91285.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
          Length = 1047

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 27/212 (12%)

Query: 2    KQYH----KFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + +++ +  L  ++ +       +   +  QL      + E     +    K
Sbjct: 824  KLYAAYLAELKQDAFKHLNKDSFQKNRIRILAGLTRLRQLCCHPALFVEG---YDGGSAK 880

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-QE 103
               L  ++ +  A    ++V   F   L  +            +  G+T  ++   + + 
Sbjct: 881  FDQLMELLTECRATGRRVLVFSQFTQMLGIIGNQLAKEGVPYFYLDGQTPPQERVELCRR 940

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + +V + LWW+    QQ  +R       + G ++
Sbjct: 941  FNEGQGELFLISLKAGGTGLNLT-GADTVVLYDLWWNPAVEQQAADR-----AHRMGQEK 994

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V  LIA+ TI+E + +    K  + D ++
Sbjct: 995  EVQVVRLIAKGTIEEKINELQMKKKNLIDDVI 1026


>gi|108762463|ref|YP_629793.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108466343|gb|ABF91528.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1208

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRT-LDKD 97
            ++   K++    ++ +  A     +V   F S         D   +   +  G+T     
Sbjct: 1022 KLESAKLERFMELVRELRAEGHRALVFSQFTSHLALVREVLDAEGIDYEYLDGQTPAGAR 1081

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               ++ + EG +PL      + G GLNL      ++    WW+     Q  +R       
Sbjct: 1082 AERVRAFQEGDVPLFLISLKAGGFGLNLT-AATTVIHLDPWWNPAVEDQASDR-----AH 1135

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +R V VY L+ + TI+E +L     K  +   +L  
Sbjct: 1136 RIGQERPVTVYRLVTRGTIEEQMLSLHEHKRALVAGVLEG 1175


>gi|329922954|ref|ZP_08278470.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328941727|gb|EGG38012.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 1111

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  Q+      + +     E    K++ L   IE+       ++V   F   L  
Sbjct: 916  LAGITRLRQICCHPALFVDG---YEGGSAKLEQLLETIEECRLAGRRMLVFSQFTGMLNL 972

Query: 84   LQKA---------FPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G+T   +   + + +NEG+  +      + G GLNL  G + ++
Sbjct: 973  IAGELGYRGIPFFYLDGQTPGSERVELCERFNEGEREVFLISLKAGGTGLNLT-GADTVI 1031

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    QQ ++R       + G K+ V V   +AQ+TI++ ++   + K  + + 
Sbjct: 1032 LYDLWWNPAVEQQAMDR-----AHRIGQKKVVQVIRFVAQDTIEDKMVALQQKKKDLIEE 1086

Query: 194  LLN 196
            L+ 
Sbjct: 1087 LVQ 1089


>gi|168491585|ref|ZP_02715728.1| Snf2 family protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574164|gb|EDT94692.1| Snf2 family protein [Streptococcus pneumoniae CDC0288-04]
          Length = 1032

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTEAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|297190045|ref|ZP_06907443.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150349|gb|EFH30576.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 700

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    +                    Q+ N  A Y  EE+   E    K++ L
Sbjct: 473 LYEAVVRETLAAISEAGGMERRGLVVKLLTALKQICNHPAQYLKEERPRVEGRSGKLELL 532

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L+    +          G  + +    +  +  G
Sbjct: 533 DELLDTILSEDASVLVFTQYVQMARLLEGHLARRGVRTQFLHGGTPVPEREAMVNRFQNG 592

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 593 EVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQDRPVQV 646

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ TI++ + + L  K  + D +L A + 
Sbjct: 647 HRLIAEGTIEDRIARMLERKKDLADSVLGAGEA 679


>gi|293401290|ref|ZP_06645434.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305416|gb|EFE46661.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1075

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 21/182 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
             S   +  QL        E     +    KI A    IE  +A+   +++   F S L+ 
Sbjct: 884  LSMLTRLRQLCCDPRLLYEN---YQGVGNKINACMEFIENCRASGKKVLLFSQFTSLLSL 940

Query: 84   LQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++K   Q               +    +  +N    P+      + G GLNL     +++
Sbjct: 941  IEKELKQREIDYYLLKGSTPKVQRQQYVNAFNVDATPVFLISLKAGGTGLNLT-SAEVVI 999

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW++    Q  +R       + G    V V  LIA++TI+E ++     K  + D 
Sbjct: 1000 HFDPWWNVSAQNQATDR-----AYRIGQHNNVQVVKLIAKDTIEEKIMHLQELKQDLSDS 1054

Query: 194  LL 195
            ++
Sbjct: 1055 II 1056


>gi|325685916|gb|EGD27981.1| non-specific serine/threonine protein kinase [Lactobacillus
            delbrueckii subsp. lactis DSM 20072]
          Length = 1185

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 84/217 (38%), Gaps = 32/217 (14%)

Query: 2    KQYH----KFQRELYCDLQGE-NIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDE 54
            K Y     + + ++  +       E     +   +  ++    G +Y D +        E
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE-----SE 1016

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQ 102
            K  A   +I+ A      +++   F S L  L+++            G+T   +    + 
Sbjct: 1017 KRLACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKAEEIGFLRIDGQTPKARRLTLVN 1076

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    P  +      + G GLNL  G + ++ +  WW++    Q  +R       + G
Sbjct: 1077 VFNHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQNQATDR-----AHRIG 1130

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++ V VY LIA++T++E +L     K  +   +L A
Sbjct: 1131 QEKKVTVYKLIAKDTVEEAILDLQEAKRQLAQGILTA 1167


>gi|295695581|ref|YP_003588819.1| SNF2-related protein [Bacillus tusciae DSM 2912]
 gi|295411183|gb|ADG05675.1| SNF2-related protein [Bacillus tusciae DSM 2912]
          Length = 1189

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 19/205 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQL-ANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + + +      G         +   +  Q+ A+ A+   E        +  ++ L     
Sbjct: 966  QLRAQQLMQKGGLTENRIAILALITRLRQVCADPALVVPEYDGSSAKLEALLELLRDY-- 1023

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE-WNEGKIPLLFA 114
            +      +V   F   L R++    Q         GRT  KD   + + +N G+  +   
Sbjct: 1024 RVAGRRALVFSQFTQMLERIRGRLAQEGIEAFYLDGRTPPKDRLAMADAFNAGERGVFLI 1083

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + LWW+     Q I R       + G K  V V  +IA+ 
Sbjct: 1084 SLRAGGTGLNLT-GADTVILYDLWWNPAVDAQAIGR-----AHRIGQKNPVLVLRVIAKG 1137

Query: 175  TIDELVLQRLRTKSTIQDLLLNALK 199
            TI+E +      K  + D ++ + K
Sbjct: 1138 TIEERMYALQMKKQALFDRVIESEK 1162


>gi|29828134|ref|NP_822768.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605236|dbj|BAC69303.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 979

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  EE+        K++ L
Sbjct: 752 LYEAVVRETLAEISGADSMARRGLIVKLLTGLKQICNHPAQFLKEERPNIAGRSGKLELL 811

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G  + +    +  + EG
Sbjct: 812 DELLDTILSEGAGVLVFTQYVRMARLLERHLAARGVPSQFLHGGTPVHEREAMVHRFQEG 871

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 872 EVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 925

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + LIA+ TI++ +   L  K  + D +L
Sbjct: 926 HRLIAEGTIEDRIADMLLRKRELADAVL 953


>gi|168488816|ref|ZP_02713015.1| Snf2 family protein [Streptococcus pneumoniae SP195]
 gi|183572774|gb|EDT93302.1| Snf2 family protein [Streptococcus pneumoniae SP195]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|307706218|ref|ZP_07643035.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK321]
 gi|307618408|gb|EFN97558.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK321]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|322419843|ref|YP_004199066.1| SNF2-like protein [Geobacter sp. M18]
 gi|320126230|gb|ADW13790.1| SNF2-related protein [Geobacter sp. M18]
          Length = 1385

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L G   +E          ++ ++  +          +     +   K+
Sbjct: 1162 LYQAIRKSALDNLAGIGKVEGKGELHLKILAEIMRLRRACCNPRLVLPD---SAIASAKL 1218

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQE------W 104
             A   I+E+   N    +V   F   L  +++   +       LD     ++       +
Sbjct: 1219 AAFAEIVEELRENRHKALVFSQFVGHLEIIREHVERAGIPYQYLDGSTPAVERKRRVDAF 1278

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  L      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1279 QSGEGDLFLISLKAGGVGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQQRP 1332

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y L+ + TI+E ++   + K  + D LL 
Sbjct: 1333 VTIYRLVTKGTIEEKIVGLHQQKRGLADSLLE 1364


>gi|15901369|ref|NP_345973.1| Snf2 family protein [Streptococcus pneumoniae TIGR4]
 gi|111658366|ref|ZP_01409053.1| hypothetical protein SpneT_02000445 [Streptococcus pneumoniae TIGR4]
 gi|14973013|gb|AAK75613.1| Snf2 family protein [Streptococcus pneumoniae TIGR4]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|312196824|ref|YP_004016885.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311228160|gb|ADP81015.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 1282

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R+    L  + N              QL+  A   D+ +    +   KI 
Sbjct: 1063 RLYQTQLQRERQKVLGLVNDLNRNRLTILRSLTLLRQLSLHAGLVDDGQ--ARLPSAKID 1120

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             L   +    A     +V   F   L         A ++  +  GRT D+    ++ +  
Sbjct: 1121 TLLEQLTHVVAGGHRALVFSQFTGFLGKVRAELGDAGVEYCYLDGRTRDR-ADVVERFRS 1179

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            GK  +      + G GLNL    +       WW+     Q ++R       + G  R V 
Sbjct: 1180 GKASVFLISLKAGGFGLNLTE-ADYCFLLDPWWNPATEAQAVDR-----THRIGQTRNVL 1233

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY L+A++TI+E V+     K+ +   +++
Sbjct: 1234 VYRLVARDTIEEKVMALKARKARLFSGVID 1263


>gi|315604148|ref|ZP_07879214.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313854|gb|EFU61905.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1045

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 24/211 (11%)

Query: 2    KQYHK---FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y +     R    DL  + +    +  S   +  QLA      D    +  V   KI+
Sbjct: 827  RIYDQHLARVRARILDLLADVDANRMSVLSSLTRLRQLALDPALVD--GAYSRVGSAKIE 884

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNE 106
             L   +++        +V   F S LAR++ A            G T D+D   I+E+  
Sbjct: 885  YLADHLDEIVPLGHQALVFSQFTSFLARIRGALERRGIAVVQLDGSTRDRDR-VIEEFRS 943

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GL L     + V    WW+    +Q I+R       + G  + V 
Sbjct: 944  GQAQVFLISLKAGGAGLTLTEADYVYVM-DPWWNPAAEEQAIDR-----AHRIGQTKKVN 997

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A +TI+  V++    K  +   ++N 
Sbjct: 998  VYRLVAADTIEAKVVELQDRKRRLISSVMNG 1028


>gi|150017526|ref|YP_001309780.1| non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149903991|gb|ABR34824.1| Non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1057

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ E    +     S   K  QL        ++         K++  
Sbjct: 835  KVYASYVKDIKEKMEAENFERDKITIFSYLTKLRQLCLDPSIVVDKYT---GGSAKLEEA 891

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DKDPCTIQEWN-E 106
              +IE   AN   I++   F S L          +++  +  G T   K    + E+N  
Sbjct: 892  LNLIEDNIANGHKILLFSQFTSVLNNISKELSENKIEHMYLDGSTKATKRSELVDEFNGS 951

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K  +      + G GLNL    +I++ F  WW+     Q  +R       + G K  V 
Sbjct: 952  DKYKVFLISLKAGGTGLNLT-SADIIIHFDPWWNPAVEDQATDR-----AHRIGQKNVVQ 1005

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI++ TI+E ++    +K  + + +L +
Sbjct: 1006 VFKLISEGTIEERIINLQESKKELINGILES 1036


>gi|332073859|gb|EGI84337.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA41301]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|301794535|emb|CBW36977.1| putative SNF-family helicase [Streptococcus pneumoniae INV104]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|260888903|ref|ZP_05900166.1| superfamily II DNA/RNA helicase, SNF2 family [Leptotrichia hofstadii
            F0254]
 gi|260861350|gb|EEX75850.1| superfamily II DNA/RNA helicase, SNF2 family [Leptotrichia hofstadii
            F0254]
          Length = 1119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M    + ++EL  +   E        +   K  Q+ N    +DE    +     KIK L+
Sbjct: 907  MAYVKQAKKELR-EFDKEENNNLKVLAILTKLRQICNSPQLFDENYKGEV---AKIKLLK 962

Query: 61   VIIEK--ANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTI-QEWNEGK 108
             ++     N   +++   F           +   ++  F  G    K+   I +++N G+
Sbjct: 963  ELMPDILENNHRMLIFSQFLGTLEEIKIELEKEEVKYFFIDGSVKSKERMEISKKFNSGE 1022

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              ++     + G GLNL  G ++++ +  WW+     Q  +R       + G K++V V 
Sbjct: 1023 GQVVLISLKAGGTGLNL-VGADVVIHYDPWWNFAVENQASDR-----AHRIGQKKSVQVI 1076

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI + TI+E +++    K T+ + +L 
Sbjct: 1077 KLITEGTIEEKIIKLQEKKRTLSENILE 1104


>gi|306824889|ref|ZP_07458233.1| Snf2 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433100|gb|EFM36072.1| Snf2 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 1031

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--E 64
            R+    +  +          S  ++  Q+ +    + +     +    K+ +L  ++   
Sbjct: 815  RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDN---YQGASGKLDSLRDLLLQV 871

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE-WNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  +D   + + +N+G+  +   
Sbjct: 872  ADGGHRVLIFSQFKGMLEKIEQELPNLGLTSFKITGSTPAQDRQEMTKIFNQGERDIFLI 931

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +R V VY LI + 
Sbjct: 932  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQERKVEVYRLITRG 985

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 986  TIEEKIQELQEQKKHLISQVLDGTESRA 1013


>gi|148992589|ref|ZP_01822257.1| Snf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168484940|ref|ZP_02709885.1| Snf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|147928606|gb|EDK79620.1| Snf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|172041922|gb|EDT49968.1| Snf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|332072316|gb|EGI82799.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA17570]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|300771853|ref|ZP_07081724.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761239|gb|EFK58064.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K  RE     +G+ I            K  Q+ N       E    E +  KI+ L 
Sbjct: 900  LYEKEFREFISATEGDEIRKSPMYVLKGLTKLRQICNSTKLLKTEDLSTEDNSAKIETLI 959

Query: 61   VIIEKANA-APIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIP 110
              IE   A   IIV   F S L  +QKA            G+T ++D        +    
Sbjct: 960  EQIEDNIAYHKIIVFSQFVSMLQLIQKALSAKGIDASMLTGKTKNRDQVVHNFQQQEDNR 1019

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +++     WW+     Q I+R       + G ++ V    L
Sbjct: 1020 VFLISLKAGGTGLNLT-AASLVYLVDPWWNPAVENQAIDR-----AYRIGQQQTVTAVRL 1073

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I  +T++E +++  ++K+ +   L+
Sbjct: 1074 ITPDTVEEKMIKMQQSKNELASALI 1098


>gi|313124061|ref|YP_004034320.1| DNA/RNA helicase, superfamily ii, snf2 family protein [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
 gi|312280624|gb|ADQ61343.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
          Length = 1185

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 2    KQYH----KFQRELYCDLQGE-NIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDE 54
            K Y     + + ++  +       E     +   +  ++    G +Y D +        E
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE-----SE 1016

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
            K  A   +I+ A      +++   F S L  L+++                  +    + 
Sbjct: 1017 KRLACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKADEIGFLRIDGQTPKARRLTLVN 1076

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    P  +      + G GLNL  G + ++ +  WW++    Q  +R       + G
Sbjct: 1077 VFNHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQNQATDR-----AHRIG 1130

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++ V VY LIA++T++E +L     KS +   +L A
Sbjct: 1131 QEKKVTVYKLIAKDTVEEAILDLQEAKSQLAQGILTA 1167


>gi|301802243|emb|CBW34994.1| putative SNF-family helicase [Streptococcus pneumoniae INV200]
          Length = 1032

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148658072|ref|YP_001278277.1| non-specific serine/threonine protein kinase [Roseiflexus sp. RS-1]
 gi|148570182|gb|ABQ92327.1| Non-specific serine/threonine protein kinase [Roseiflexus sp. RS-1]
          Length = 1068

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL----- 81
             ++  Q+ N     + +         K + L   +E   A     +V   F   L     
Sbjct: 880  LLRLRQICNHPRLIEPD---FRGSSGKFELLIETLETLAAEGRKALVFSQFVQMLTLIRE 936

Query: 82   ----ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                 R+  A+  G+T  +     +  ++  +P       + G GLNL    + ++    
Sbjct: 937  ALDARRIPYAYLDGQTRQRQQEVDRFQSDETLPFFLISLKAGGVGLNLT-AADYVIHVDP 995

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G ++ VFVY L+ +++++E +L     K  + + L+ A
Sbjct: 996  WWNPAVEMQATDR-----THRIGQEKPVFVYKLVTRDSVEEKILHLQNRKRELVEQLITA 1050


>gi|148984868|ref|ZP_01818121.1| Snf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147922890|gb|EDK74006.1| Snf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301800358|emb|CBW32988.1| putative SNF-family helicase [Streptococcus pneumoniae OXC141]
          Length = 1034

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 818  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 874

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 875  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 934

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 935  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 988

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 989  TIEEKIQELQEQKKHLVSQVLDGTESRG 1016


>gi|94985591|ref|YP_604955.1| SNF2-related [Deinococcus geothermalis DSM 11300]
 gi|94555872|gb|ABF45786.1| Superfamily II DNA/RNA helicase, SNF2 family [Deinococcus
            geothermalis DSM 11300]
          Length = 1126

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 22/182 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARL 84
             +K  Q A        E   +     K+      L  ++E+     +++   F + L  L
Sbjct: 924  LLKLRQAATDPRLVKLEAARRVKGSAKLDWLTQNLPQMVEE--GRRVLIFSQFATLLGLL 981

Query: 85   QKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            ++             G+T D+    +Q + +G++P+      + G GLNL    + ++  
Sbjct: 982  EETLGELGLGYTKLTGQTKDR-ATPVQRFQQGEVPVFLISLKAGGVGLNLT-AADTVIHL 1039

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              WW+     Q  +R       + G  + VFVY LIA  +++E +L   + KS +   +L
Sbjct: 1040 DPWWNPAAENQATDR-----AYRIGQDKPVFVYKLIAAGSVEERILDLQQRKSALAQGVL 1094

Query: 196  NA 197
            + 
Sbjct: 1095 DG 1096


>gi|325695119|gb|EGD37021.1| Snf2 family protein [Streptococcus sanguinis SK150]
          Length = 1033

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+ ++ +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGVEAK 1016


>gi|225861356|ref|YP_002742865.1| Snf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230251|ref|ZP_06963932.1| Snf2 family protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298503259|ref|YP_003725199.1| Snf2 family helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727638|gb|ACO23489.1| Snf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238854|gb|ADI69985.1| Snf2 family helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327389708|gb|EGE88053.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA04375]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|168487493|ref|ZP_02712001.1| Snf2 family protein [Streptococcus pneumoniae CDC1087-00]
 gi|183569678|gb|EDT90206.1| Snf2 family protein [Streptococcus pneumoniae CDC1087-00]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|163798146|ref|ZP_02192082.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159176589|gb|EDP61167.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1381

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1163 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQD---AGVPSGKLAAF 1219

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD-PCTIQEWNEG 107
              +++    N    +V   F + LA          ++  +  G T   D    +  +  G
Sbjct: 1220 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1279

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+     Q  +R       + G +R V +
Sbjct: 1280 TADVFLISLRAGGTGLNLT-AADYVVHLDPWWNPAVEDQASDR-----AHRIGQERPVTI 1333

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI Q++I+E +L   R K  +   +L  
Sbjct: 1334 YRLIMQDSIEEQILHLHRDKRDLAAGILEG 1363


>gi|148997416|ref|ZP_01825021.1| Snf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168575282|ref|ZP_02721245.1| Snf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|307068167|ref|YP_003877133.1| superfamily II DNA/RNA helicase [Streptococcus pneumoniae AP200]
 gi|147756471|gb|EDK63512.1| Snf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|183578817|gb|EDT99345.1| Snf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|306409704|gb|ADM85131.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            pneumoniae AP200]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|149003261|ref|ZP_01828157.1| Snf2 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|237650205|ref|ZP_04524457.1| Snf2 family protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820912|ref|ZP_04596757.1| Snf2 family protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758721|gb|EDK65718.1| Snf2 family protein [Streptococcus pneumoniae SP14-BS69]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|168493424|ref|ZP_02717567.1| Snf2 family protein [Streptococcus pneumoniae CDC3059-06]
 gi|183576378|gb|EDT96906.1| Snf2 family protein [Streptococcus pneumoniae CDC3059-06]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|149021792|ref|ZP_01835799.1| Snf2 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147930028|gb|EDK81015.1| Snf2 family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|225859280|ref|YP_002740790.1| Snf2 family protein [Streptococcus pneumoniae 70585]
 gi|225720179|gb|ACO16033.1| Snf2 family protein [Streptococcus pneumoniae 70585]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|221232235|ref|YP_002511388.1| putative SNF-family helicase [Streptococcus pneumoniae ATCC 700669]
 gi|220674696|emb|CAR69269.1| putative SNF-family helicase [Streptococcus pneumoniae ATCC 700669]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148988567|ref|ZP_01820000.1| Snf2 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147925768|gb|EDK76843.1| Snf2 family protein [Streptococcus pneumoniae SP6-BS73]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|300811728|ref|ZP_07092202.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
 gi|300497304|gb|EFK32352.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
          Length = 1185

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 32/217 (14%)

Query: 2    KQYH----KFQRELYCDLQGE-NIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDE 54
            K Y     + + ++  +       E     +   +  ++    G +Y D +        E
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE-----SE 1016

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQ 102
            K  A   +I+ A      +++   F S L  L+++            G+T   K    + 
Sbjct: 1017 KRLACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKAEEIVFLRIDGQTPKAKRLTLVN 1076

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    P  +      + G GLNL  G + ++ +  WW++    Q  +R       + G
Sbjct: 1077 VFNHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQNQATDR-----AHRIG 1130

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++ V VY LIA++T++E +L     KS +   +L A
Sbjct: 1131 QEKKVTVYKLIAKDTVEEAILDLQEAKSQLAQGILTA 1167


>gi|255528070|ref|ZP_05394903.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296186302|ref|ZP_06854706.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255508235|gb|EET84642.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296049103|gb|EFG88533.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1081

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 30/210 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKA 58
            M+   K  ++         I A+       K  QL      +  D           KI+A
Sbjct: 865  MELIKKKVKDFEFQNSKIEILAY-----ITKLRQLCLDPRVIIKDYNGE-----SAKIEA 914

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE 106
            L  ++ K+      I+V   F S L  + +   +              +K    + ++N+
Sbjct: 915  LVELLSKSIGQGHRILVFSQFTSVLKNIGRRINKEDICFSYLDGSIPSEKRINLVNDFNQ 974

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    ++++ F  WW+    +Q  +R       + G K+ V 
Sbjct: 975  GENSVFLISLKAGGTGLNLT-SADVVIHFDPWWNPAVEEQATDR-----AHRIGQKKVVE 1028

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  ++A+ TI+E ++     K  +   L+ 
Sbjct: 1029 VIKIVAKGTIEEKIISLQEEKKKLIGSLIE 1058


>gi|291457361|ref|ZP_06596751.1| protein, SNF2 family [Bifidobacterium breve DSM 20213]
 gi|291381196|gb|EFE88714.1| protein, SNF2 family [Bifidobacterium breve DSM 20213]
          Length = 1358

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 30/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA--VYYDEEKHWKEVHDE 54
            K Y   ++ L   L+      FN+      ++  +  Q+      +Y D +         
Sbjct: 1121 KLYAAHEQRLRMQLEHSEEAEFNTSKIRILAELTRLRQICCDPRLLYADAKDQ-----SA 1175

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
            K+ A+  ++E         ++   F S L  + + F                 K    + 
Sbjct: 1176 KLAAIAELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKRKRLELVD 1235

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N    P       +   GLNL  G ++++    WW+              R  + G  
Sbjct: 1236 QFNADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QAADRAHRIGQT 1289

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1290 EDVNVYQVVAKDTIEERILELQHTKSELARQFTDA 1324


>gi|28211487|ref|NP_782431.1| SWF/SNF family helicase [Clostridium tetani E88]
 gi|28203928|gb|AAO36368.1| SWF/SNF family helicase [Clostridium tetani E88]
          Length = 1093

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)

Query: 2    KQYHKFQRELYCD-LQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVH--DEKI 56
            K Y  +  EL    ++ +  +    A  +   K  QL       D     K+ +  + K+
Sbjct: 870  KAYANYAMELIEKKVKDDEFKKSKIAILSYITKLRQLC-----LDPTVTMKDYNGGNGKM 924

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------KDPCTIQEW 104
            +AL  ++ ++      I++   F S L     R+ K       LD      K    ++++
Sbjct: 925  EALVDLLLQSIGEGHRILIFSQFTSVLKNIGKRIIKEGIDFSYLDGSIPSEKRMNMVRDF 984

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+GK  +      + G GLNL    ++++ F  WW+     Q  +R       + G +  
Sbjct: 985  NDGKNSVFLISLKAGGTGLNLT-SADVVIHFDPWWNPAVEDQATDR-----AHRIGQQNV 1038

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V  +IA+ TI+E ++     K  +   L+
Sbjct: 1039 VEVIKIIAKGTIEEKIILLQEEKKKLISELM 1069


>gi|182415317|ref|YP_001820383.1| non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
 gi|177842531|gb|ACB76783.1| Non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
          Length = 848

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSD---------LARLQKAFPQGR--TLDKDP 98
              K+ A   ++ +A  +   ++V   F S          +      +  G      +  
Sbjct: 678 DSAKLDAFRELLAEAVDDGHRVLVFSQFTSLLALLREELAVQETAHCYLDGSMPPRARQA 737

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   IP+      + G GLNL    + +V F  WW+     Q  +R       +
Sbjct: 738 EVDRFQNSPDIPVFLISLKAGGTGLNLT-AADTVVHFDPWWNPAAEAQATDR-----AHR 791

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V  Y LIA  T++E VL     K  +   +  A
Sbjct: 792 IGQSRIVTSYKLIASGTVEEKVLALQEEKRALLAGVFEA 830


>gi|149011758|ref|ZP_01832954.1| Snf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182684478|ref|YP_001836225.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|303255308|ref|ZP_07341378.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|303260148|ref|ZP_07346120.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262538|ref|ZP_07348479.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264940|ref|ZP_07350855.1| snf2 family protein [Streptococcus pneumoniae BS397]
 gi|303267250|ref|ZP_07353114.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|303269560|ref|ZP_07355323.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|147764189|gb|EDK71121.1| Snf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182629812|gb|ACB90760.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|302597676|gb|EFL64752.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|302636255|gb|EFL66749.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638645|gb|EFL69108.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302640904|gb|EFL71288.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|302643215|gb|EFL73498.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|302645459|gb|EFL75691.1| snf2 family protein [Streptococcus pneumoniae BS397]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|317126472|ref|YP_004100584.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
 gi|315590560|gb|ADU49857.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
          Length = 1147

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 18/202 (8%)

Query: 6    KFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R+    L  +         +   +  QLA      DE    K    +    +E + E
Sbjct: 932  QRERQRVLGLLADAEGNRVAILASLTRLRQLALDPALVDEAHRGKATAAKVEFLVEQLRE 991

Query: 65   -KANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
              A     +V   F   L         A L+ A+  G T D+ P  I+ +  G       
Sbjct: 992  LAAEGHRALVFSQFTGFLRVVEGALAAAGLRTAYLDGSTTDR-PSVIRGFRHGDATAFLI 1050

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GL L     + V    WW+     Q I+R       + G  + V VY L++  
Sbjct: 1051 SLKAGGFGLTLTEADYVFVL-DPWWNPAAEAQAIDR-----AHRIGQDKPVTVYRLVSAG 1104

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            TI+E V+     K  +   +++
Sbjct: 1105 TIEEKVVALQERKRDLFQRVVD 1126


>gi|15903418|ref|NP_358968.1| Snf2 family protein [Streptococcus pneumoniae R6]
 gi|116516877|ref|YP_816813.1| Snf2 family protein [Streptococcus pneumoniae D39]
 gi|15459024|gb|AAL00179.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            R6]
 gi|116077453|gb|ABJ55173.1| Snf2 family protein [Streptococcus pneumoniae D39]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|294812014|ref|ZP_06770657.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326440261|ref|ZP_08214995.1| helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294324613|gb|EFG06256.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 986

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 36/223 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY----------------DE 44
            Y    RE    ++G    A             Q+ N    +                  
Sbjct: 745 LYEAAVREAMAAIEGAEGMARRGMVMKLLTDLKQICNHPAQFLKEPGRTGPGHRGSPGRG 804

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGR 92
                     K+  L+ ++E   A    +++   + +    L +              G 
Sbjct: 805 PGTRLAGRSGKLALLDELLETILAEEGAVLIFTQYVTMARLLLEHLSARSVPAQLLHGGT 864

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +    +  +  G+IP+      + G GLNL   G+ ++ +  WW+    +Q  +R  
Sbjct: 865 PVAERQRMVDRFQSGEIPVFVLSLKAAGTGLNLTRAGH-VIHYDRWWNPAVEEQATDR-- 921

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  R V V+ LI + T+++ +   L  K  + D +L
Sbjct: 922 ---AYRIGQTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVL 961


>gi|254391562|ref|ZP_05006762.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197705249|gb|EDY51061.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 754

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 36/223 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY----------------DE 44
            Y    RE    ++G    A             Q+ N    +                  
Sbjct: 513 LYEAAVREAMAAIEGAEGMARRGMVMKLLTDLKQICNHPAQFLKEPGRTGPGHRGSPGRG 572

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGR 92
                     K+  L+ ++E   A    +++   + +    L +              G 
Sbjct: 573 PGTRLAGRSGKLALLDELLETILAEEGAVLIFTQYVTMARLLLEHLSARSVPAQLLHGGT 632

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +    +  +  G+IP+      + G GLNL   G+ ++ +  WW+    +Q  +R  
Sbjct: 633 PVAERQRMVDRFQSGEIPVFVLSLKAAGTGLNLTRAGH-VIHYDRWWNPAVEEQATDR-- 689

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  R V V+ LI + T+++ +   L  K  + D +L
Sbjct: 690 ---AYRIGQTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVL 729


>gi|322387436|ref|ZP_08061046.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
 gi|321141965|gb|EFX37460.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
          Length = 1032

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 78/192 (40%), Gaps = 21/192 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSD 80
                +  ++  Q+ +    + E+    +    K+ +L  ++         +++   F   
Sbjct: 832  VEILTGLMRLRQICDTPALFMED---YKGDSGKLDSLRDLLSQIAEGNHRVLIFSQFRGM 888

Query: 81   LARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            L R++K  PQ         G T  ++   + + +N+G+  +      + G GLNL  G +
Sbjct: 889  LDRIEKELPQLGLTSFKITGSTPSQERQEMTKAFNQGERDVFLISLKAGGVGLNLT-GAD 947

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++   LWW+     Q I R       + G  +AV VY L+ + TI+E + +    K  +
Sbjct: 948  TVILVDLWWNPAVESQAIGR-----AHRMGQDQAVEVYRLVTRGTIEEKIQELQEEKKNL 1002

Query: 191  QDLLLNALKKET 202
               +L+  +   
Sbjct: 1003 VSEVLDGTESRG 1014


>gi|167032695|ref|YP_001667926.1| non-specific serine/threonine protein kinase [Pseudomonas putida
            GB-1]
 gi|166859183|gb|ABY97590.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            GB-1]
          Length = 1105

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASC 119
               +++   F S LA +++   + +                ++++ +G   +      + 
Sbjct: 948  GRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVRQFQQGDSEVFLISLKAG 1007

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ F  WW+     Q  +R       + G  + VFV+ LI + T++E 
Sbjct: 1008 GVGLNLT-AADTVIHFDPWWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEK 1061

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +    + K+ +   LL+  + 
Sbjct: 1062 IQLLQQEKAALAASLLDGGQA 1082


>gi|330506407|ref|YP_004382835.1| SNF2 family helicase [Methanosaeta concilii GP-6]
 gi|328927215|gb|AEB67017.1| SNF2 family helicase [Methanosaeta concilii GP-6]
          Length = 1035

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++            +   K  Q+ N    + ++    E    K+  LE
Sbjct: 795 LYAAVVEDMLSRIESSEGMKRRGQILAALTKLKQICNHPALFLQDGSPLEGRSGKLSRLE 854

Query: 61  VIIEKA--NAAPIIVAYHF-------NSDLAR---LQKAFPQGRT-LDKDPCTIQEWNEG 107
            ++++A       ++   F          L     ++  F  G+T   +    IQ + +G
Sbjct: 855 EMLDEAISVGDRALIFTQFAGMGAMLRHQLQEKLGVEVLFLHGKTSRKQREEMIQRFQQG 914

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL    N +  F  WW+     Q  +R       + G K+ VFV
Sbjct: 915 SSPIFILSLKAGGFGLNLT-AANHVFHFDRWWNPAVENQATDR-----AFRIGQKKNVFV 968

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +  +   T++E + Q +  K  + + ++
Sbjct: 969 HKFVCAGTLEERIDQMIEQKKALAESVI 996


>gi|300778365|ref|ZP_07088223.1| Snf2 family protein [Chryseobacterium gleum ATCC 35910]
 gi|300503875|gb|EFK35015.1| Snf2 family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1113

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  +++EL         +++   +    T   +  Q+ N  V   E   +   +  KI
Sbjct: 890  KIYDAYEKELREFVAANDDDDLNKNSMHVLTGLTRLRQICNSPVLMKEG--YSGENAVKI 947

Query: 57   KAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
            + L E I+ K+    I+V   F   L  ++    Q         G+T D+        N 
Sbjct: 948  EILTEQILGKSKDHKILVFSQFVGMLDLIKAELEQHNIGYEYLTGQTKDRGEKVTHFQNN 1007

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    + +     WW+     Q I+R       + G  + V 
Sbjct: 1008 EDIRVFLISLKAGGVGLNLTQ-ADYIYLVDPWWNPAAENQAIDR-----SYRIGQTKNVI 1061

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +I  NT++E +L   + K  +   LL
Sbjct: 1062 AIRMICSNTVEEKILTLQKKKKQLAQNLL 1090


>gi|88857070|ref|ZP_01131713.1| helicase [Pseudoalteromonas tunicata D2]
 gi|88820267|gb|EAR30079.1| helicase [Pseudoalteromonas tunicata D2]
          Length = 1402

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 29/213 (13%)

Query: 4    YHKFQRELYCDLQGENIEAFNSA-------SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   ++     L   +    N+A       ++  K  Q          +     +   K+
Sbjct: 1180 YEALRQTAITKLTEAS-NHSNAAEQRIRMLAELTKLRQACCHPALIMPDTT---LTSSKL 1235

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEW 104
             AL  ++ +   N    ++   F   LA +++             G T  K+    +  +
Sbjct: 1236 AALNTLLIELQQNNHKALIFSQFVGHLALIKQHLDAQDISYQYLDGSTPTKERQQRVNAF 1295

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+    +Q  +R       + G +R 
Sbjct: 1296 QRGEGDVFLISLKAGGSGLNLT-AADYVIHMDPWWNPAVEEQASDR-----AHRMGQQRP 1349

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LIA+ TI+E ++   + K  + D LL  
Sbjct: 1350 VTVYRLIAKGTIEEQIVAMHQHKRDLADTLLAG 1382


>gi|91204322|emb|CAJ71975.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
          Length = 1383

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +++   +++    G+        ++ +K  +    +           +   KI+  
Sbjct: 1164 YEALRQKAIDNIESFDFGKGEGYLRVLAEIMKLRRACCHSRLVVPG---HSLESSKIRLF 1220

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG 107
              ++++   N    +V   F   LA ++          +       + +   ++  +  G
Sbjct: 1221 GEVVQELMENNHKALVFSQFVDYLAIIREYVEGLNISYQYLDGSTPMKERKRSVDAFQSG 1280

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  L      + G GLNL    + ++    WW+     Q  +R       + G KR V +
Sbjct: 1281 EGELFLISLKAGGLGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQKRPVTI 1334

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+ + TI+E ++   + K  + D LL  
Sbjct: 1335 YRLVTKGTIEEKIVNLHQHKRELADSLLEG 1364


>gi|331266037|ref|YP_004325667.1| Snf2 family protein, superfamily II DNA/RNA helicases [Streptococcus
            oralis Uo5]
 gi|326682709|emb|CBZ00326.1| Snf2 family protein, superfamily II DNA/RNA helicases [Streptococcus
            oralis Uo5]
          Length = 1031

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 81/209 (38%), Gaps = 25/209 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            R+    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----YQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLF 113
              A    +++   F   L ++++  P          G T   D   + + +N+G+     
Sbjct: 871  VAAGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQKVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             TI+E + +    K  +   +L+  +   
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESRA 1013


>gi|300869843|ref|YP_003784714.1| HepA Superfamily II D R helicase [Brachyspira pilosicoli 95/1000]
 gi|300687542|gb|ADK30213.1| HepA Superfamily II D R helicases SNF2 family [Brachyspira
           pilosicoli 95/1000]
          Length = 1005

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 16/179 (8%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
           S   +  Q+        ++         K      +I +A      ++V   F   L  +
Sbjct: 813 SALTRLRQVCCHPRLMHQDLRGDSHTSGKFNMFIEMIREAISGGHSVLVFSSFTRMLNIM 872

Query: 85  QKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + AF +          T       +  +N G+ P+      + G GL L    + ++ + 
Sbjct: 873 RDAFNKLNINYLYLDGTTKNRMDLVHRFNAGEAPIFLLSLKAAGTGLTLTQ-ADTVIHYD 931

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           LWW+     Q  +R       + G KR V  Y L+ + TI+E +L+    K  + D ++
Sbjct: 932 LWWNPAVEDQATDR-----AYRIGQKRVVTNYKLVTRGTIEEKILELQNKKRVLIDTVV 985


>gi|239932688|ref|ZP_04689641.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 624

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  EE+        K++ L
Sbjct: 397 LYEAVVREALAEISGADGAARRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLELL 456

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   A  A ++V   +      LQ+              G  + +    ++ + +G
Sbjct: 457 DELLDTVLAERAGVLVFTQYVQMARLLQRHLAARGVPEQFLHGGTPVAEREAMVRRFQDG 516

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 517 EVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 570

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +IA+ T+++ + + L  K  + D +L
Sbjct: 571 HRIIAEGTVEDRIAELLVRKRELADAVL 598


>gi|291441044|ref|ZP_06580434.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343939|gb|EFE70895.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 619

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  EE+        K++ L
Sbjct: 392 LYEAVVREALAEISGADGAARRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLELL 451

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   A  A ++V   +      LQ+              G  + +    ++ + +G
Sbjct: 452 DELLDTVLAERAGVLVFTQYVQMARLLQRHLAARGVPEQFLHGGTPVAEREAMVRRFQDG 511

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 512 EVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 565

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +IA+ T+++ + + L  K  + D +L
Sbjct: 566 HRIIAEGTVEDRIAELLVRKRELADAVL 593


>gi|282898570|ref|ZP_06306558.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281196438|gb|EFA71347.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 1427

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +         ++ ++  +                +   K++ L
Sbjct: 1208 YEALRRQAISKLNESDADPGKKHLQVLAEIMRLRRACCNPSLVMPNTD---LSSSKLQLL 1264

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++          +       + +   ++  +  G
Sbjct: 1265 GEVLAELLENHHKALVFSQFVDHLHIIRNYLESKSIKYQYLDGSTPMAERKRSVDSFQAG 1324

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 1325 DGDIFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQQRPVTI 1378

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI++ +++    K  + D LL  
Sbjct: 1379 YRLVAKDTIEDKIVELHHHKRDLADTLLEG 1408


>gi|306829829|ref|ZP_07463016.1| Snf2 family protein [Streptococcus mitis ATCC 6249]
 gi|304427840|gb|EFM30933.1| Snf2 family protein [Streptococcus mitis ATCC 6249]
          Length = 1031

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 25/208 (12%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            RE    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RERLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----YQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLF 113
                   +++   F   L ++++  P          G T  +D   + + +N+G+     
Sbjct: 871  VADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAQDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQKVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKE 201
             TI+E + +    K  +   +L+  +  
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|148548802|ref|YP_001268904.1| non-specific serine/threonine protein kinase [Pseudomonas putida F1]
 gi|148512860|gb|ABQ79720.1| Non-specific serine/threonine protein kinase [Pseudomonas putida F1]
          Length = 1105

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASC 119
               +++   F S LA +++   + +                +Q++ +G+  +      + 
Sbjct: 948  GRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFLISLKAG 1007

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ F  WW+     Q  +R       + G  + VFV+ LI + T++E 
Sbjct: 1008 GVGLNLT-AADTVIHFDPWWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEK 1061

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +    + K+ +   LL+  + 
Sbjct: 1062 IQLLQQEKAALAASLLDGGQA 1082


>gi|322377010|ref|ZP_08051503.1| Snf2 family protein [Streptococcus sp. M334]
 gi|321282817|gb|EFX59824.1| Snf2 family protein [Streptococcus sp. M334]
          Length = 1032

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDRLSQVSDQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGMTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|307704453|ref|ZP_07641363.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK597]
 gi|307621973|gb|EFO01000.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK597]
          Length = 1032

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSD 80
                S  ++  Q+ +    + E+    +    K+ +L  ++         +++   F   
Sbjct: 832  VEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGM 888

Query: 81   LARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            L ++++  P          G T  K+   + + +N+G+         + G GLNL  G +
Sbjct: 889  LEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLT-GAD 947

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++   LWW+     Q I R       + G +  V VY L+ + TI+E + +    K  +
Sbjct: 948  TVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHL 1002

Query: 191  QDLLLNALKKET 202
               +L+  +   
Sbjct: 1003 VSQVLDGTESRG 1014


>gi|149013295|ref|ZP_01834053.1| Snf2 family protein, putative [Streptococcus pneumoniae SP19-BS75]
 gi|182684567|ref|YP_001836314.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|303253977|ref|ZP_07340097.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|303258546|ref|ZP_07344526.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262636|ref|ZP_07348576.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263575|ref|ZP_07349497.1| snf2 family protein [Streptococcus pneumoniae BS397]
 gi|303266981|ref|ZP_07352856.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|303269746|ref|ZP_07355498.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|147762960|gb|EDK69906.1| Snf2 family protein, putative [Streptococcus pneumoniae SP19-BS75]
 gi|182629901|gb|ACB90849.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|301802325|emb|CBW35079.1| SNF2 protein [Streptococcus pneumoniae INV200]
 gi|302599065|gb|EFL66091.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|302636192|gb|EFL66687.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302640047|gb|EFL70502.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302640716|gb|EFL71111.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|302643498|gb|EFL73770.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|302646613|gb|EFL76838.1| snf2 family protein [Streptococcus pneumoniae BS397]
          Length = 1048

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 23/207 (11%)

Query: 9    RELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            +E+        I+       +   +  Q+ N    + E+    +    K+ +L  +++  
Sbjct: 836  QEMVSGASAYEIKRHKIEILAGLTRLRQICNTPALFLED---YKGDSGKMDSLFELLDTI 892

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFA 114
            +   +  ++   F S L  +++   +              DK    +  +N+G+      
Sbjct: 893  REKGSRPLIFSQFTSMLDLIEQELEKKEMSHFKITGQTPSDKRQEMVNLFNQGEKDCFLI 952

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G  + V VY LI   
Sbjct: 953  SLKAGGTGLNLT-GADTVILCDLWWNPAVEMQAIGR-----SHRLGQTKQVDVYRLITLG 1006

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            TI+E + +   +K  + + +L   +  
Sbjct: 1007 TIEEKIQELQESKKELFNTVLEGQESR 1033


>gi|116672340|ref|YP_833273.1| SNF2-related protein [Arthrobacter sp. FB24]
 gi|116612449|gb|ABK05173.1| SNF2-related protein [Arthrobacter sp. FB24]
          Length = 1154

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+  A   D       V   K+ 
Sbjct: 934  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDASLVDPS--LSGVRSSKLD 991

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             L   +E   A     ++   F   L          +++  +  G T ++    + E+  
Sbjct: 992  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLVEEKIEFCYLDGSTRNR-SDVVNEFKN 1050

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + +     WW+     Q ++R       + G  R V 
Sbjct: 1051 GSAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPASEAQAVDR-----THRIGQARNVM 1104

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A++TI+E V+     KS +   ++  
Sbjct: 1105 VYRLVAKDTIEEKVMALKAKKSQLFADVMEG 1135


>gi|289168337|ref|YP_003446606.1| HepA, superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            mitis B6]
 gi|288907904|emb|CBJ22744.1| HepA, superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            mitis B6]
          Length = 1032

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPGLFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTRG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|229084801|ref|ZP_04217060.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
 gi|228698515|gb|EEL51241.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
          Length = 1071

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 29/214 (13%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y     K + E    L  + +        +   +  Q+     ++ D+ K        
Sbjct: 848  KLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYK----GSSA 903

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ----- 102
            K + L  I+E+  +    I++   F   L+ +     ++A P        P   +     
Sbjct: 904  KFEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSAERVELCN 963

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +NEG+  L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K
Sbjct: 964  RFNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQK 1017

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V V  L+A  TI+E + +    K  +   ++ 
Sbjct: 1018 NTVQVIKLVAHGTIEEKMNELQENKKHLIAEVIE 1051


>gi|315648297|ref|ZP_07901398.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315276943|gb|EFU40286.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 1109

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E    K + L   IE+       ++V   F   L  
Sbjct: 914  LAGITRLRQICCHPALFVEG---YEGSSAKFEQLLETIEECRLAGRRMLVFSQFTGMLKL 970

Query: 84   LQKA---------FPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G+T   +   + + +NEG+  +      + G GLNL  G + ++
Sbjct: 971  IAGELGYRGIPSFYLDGQTPSAERVELCERFNEGEREVFLISLKAGGTGLNLT-GADTVI 1029

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    QQ  +R       + G K+ V V  L+AQ+TI++ +    + K  + + 
Sbjct: 1030 LYDLWWNPAVEQQATDR-----AHRIGQKKVVQVIRLVAQDTIEDKMYALQQKKKNLIEE 1084

Query: 194  LLN 196
            L+ 
Sbjct: 1085 LVQ 1087


>gi|172057599|ref|YP_001814059.1| non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990120|gb|ACB61042.1| Non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 876

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 21/192 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +   +  Q+      + E+         K++ L  +IE+  A    I++   +   LAR
Sbjct: 676 LAGLTRLRQICCDPALFVEDYT---GESTKLERLLTLIEEKLAAGHRILIFSQYTKMLAR 732

Query: 84  LQKAF---------PQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +++             G T  +D   + + +N G++ L      + G GLNL    + ++
Sbjct: 733 IRERLAAQQRAHFLLTGETPVEDRVALCERFNAGEVDLFLISLKAGGTGLNL-ATADTVI 791

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+    QQ  +R       + G +  V V  L+   TI+E + +    K+T+ D 
Sbjct: 792 LYDSWWNPAVEQQAADR-----AHRLGQQSPVEVIKLLMTGTIEEKMAELQDRKATMIDA 846

Query: 194 LLNALKKETIHV 205
           +L+  K + + +
Sbjct: 847 VLSDQKPDILTI 858


>gi|313499735|gb|ADR61101.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            BIRD-1]
          Length = 1110

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASC 119
               +++   F S LA +++   + +                +Q++ +G+  +      + 
Sbjct: 948  GRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFLISLKAG 1007

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ F  WW+     Q  +R       + G  + VFV+ LI + T++E 
Sbjct: 1008 GVGLNLT-AADTVIHFDPWWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEK 1061

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +    + K+ +   LL+  + 
Sbjct: 1062 IQLLQQEKAALAASLLDGGQA 1082


>gi|315122947|ref|YP_004064953.1| DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016707|gb|ADT70044.1| DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 1058

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 24/198 (12%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV---IIEKA 66
            +L+ + QG            +K  Q+       + E    E    K++ L     ++   
Sbjct: 852  DLFAE-QGVQKSKLAFLEALLKLRQICCHPKLIEPE---TEAASAKLEWLSSHLPLMLSL 907

Query: 67   NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +I+   F S L  + +             G+T  +D   I E+  G   +      
Sbjct: 908  -GRKVIIFSQFTSALDLIAERLNELNINFSMLTGQTRHRD-KVIDEFTSGNTSVFLISLK 965

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++ F  WW+    +Q  +R       + G    VFVY LI  N+I+
Sbjct: 966  AGGTGLNLTQ-ADTVIHFDPWWNPAVEKQATDR-----AYRIGQTNPVFVYKLIMANSIE 1019

Query: 178  ELVLQRLRTKSTIQDLLL 195
            + V Q  + K  + D L 
Sbjct: 1020 QKVFQMQQDKQALVDALF 1037


>gi|73540253|ref|YP_294773.1| SNF2-related:helicase, C-terminal [Ralstonia eutropha JMP134]
 gi|72117666|gb|AAZ59929.1| SNF2-related:Helicase, C-terminal [Ralstonia eutropha JMP134]
          Length = 988

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           +  ++ ++  + A  A     E         K++    +  +  AN   ++V   F   L
Sbjct: 788 HVLAQLMRLRRAACDARLVTPE---VGQAGAKVRTFVDLAGELAANGHKVLVFSQFVDFL 844

Query: 82  ARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             L++   Q               +    +  +  G+  +      + G GLNL    + 
Sbjct: 845 QLLRQGIEQAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNLT-AADY 903

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+     Q + R       + G +R V VY LI   TI+E +++  + K  + 
Sbjct: 904 VIIADPWWNPAAEDQAMGR-----AHRIGQQRPVTVYRLITAGTIEERIVELHKDKRALA 958

Query: 192 DLLLNA 197
           D LL+A
Sbjct: 959 DGLLDA 964


>gi|262200392|ref|YP_003271600.1| SNF2-like protein [Gordonia bronchialis DSM 43247]
 gi|262083739|gb|ACY19707.1| SNF2-related protein [Gordonia bronchialis DSM 43247]
          Length = 1159

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEK 55
            K Y      +R+    L G+     F          QL+  A   D           D  
Sbjct: 938  KIYDTRLARERQKVLGLLGDWEKNRFQVFRSLSMLRQLSLHAALVDSSHDSVNSAKVDYL 997

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN 105
            I+ L  ++++      +V   F   L  L+        +           +    +Q + 
Sbjct: 998  IEQLPGLVDE--GHSSLVFSQFTGFLDILRAHLDAEGIVYSYLDGSMSAKQRAAAVQRFR 1055

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G   +      + G GLNL       V    WW+     Q ++R       + G +R V
Sbjct: 1056 SGAAQVFLISLKAGGFGLNLTEADYCFV-CDPWWNPAAEAQAVDR-----AHRIGQQRPV 1109

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VY L++ +TI+E V++    K  + D +++
Sbjct: 1110 NVYRLVSADTIEERVVRLQERKRALFDAVVD 1140


>gi|89095677|ref|ZP_01168571.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
 gi|89089423|gb|EAR68530.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
          Length = 942

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVH-DEKIKA 58
            Y +  ++ + +++                +  QL N  A+Y  EEK    +    K++ 
Sbjct: 718 LYEQLVKDTFAEIEKLSGFERKGLILQLLSRLKQLCNHPALYLKEEKPSHLLERSSKLEK 777

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +++         ++   +      +QK   +             + ++    I  + 
Sbjct: 778 LNELVDAVLEQEESCLIFTQYIEMGHMIQKIMKKRHGIDVPFLNGSVSKNERDRMITRFQ 837

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+ P+      + G GLNL    N ++ +  WW+     Q  +R       + G +R V
Sbjct: 838 DGEFPVFLLSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERFV 891

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E +   L  K T+ D ++ +
Sbjct: 892 HVHKLICTGTLEEKIDLMLEKKQTLNDQVIQS 923


>gi|12719426|ref|NP_075497.1| hypothetical protein phiSLTp35 [Staphylococcus phage phiSLT]
 gi|12697856|dbj|BAB21728.1| unnamed protein product [Staphylococcus phage phiSLT]
          Length = 116

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 90  QGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           +   L+KD    +  WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +QQ  
Sbjct: 4   KLNELEKDSKAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQAN 63

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R+      + G      +++++  NTID+ V + L+ K   Q+ L+ A+K     
Sbjct: 64  ARL-----YRQGQNHTTIIHHIMTDNTIDQKVYEALQNKELTQEELMKAIKARIAK 114


>gi|323350997|ref|ZP_08086654.1| Snf2 family protein [Streptococcus sanguinis VMC66]
 gi|322122721|gb|EFX94430.1| Snf2 family protein [Streptococcus sanguinis VMC66]
          Length = 1033

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LAMLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|253573733|ref|ZP_04851076.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
 gi|251847261|gb|EES75266.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
          Length = 1111

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 27/212 (12%)

Query: 2    KQY----HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K Q+E    L  +          +   +  QL      + +     +    K
Sbjct: 888  KLYLAYLAKLQQETLKHLDADTFGQNRIRILAGLTRLRQLCCHPALFVDG---YDGGSAK 944

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QE 103
               L  +IE+  +    +++   F   L  + +          +  G+T   +   +   
Sbjct: 945  FDQLMEMIEECQSAGKRVLIFSQFTEMLGLIGRELGYRGLPFFYLDGKTPAAERVELCSR 1004

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K 
Sbjct: 1005 FNDGERDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRIGQKN 1058

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V  ++AQ T+++ + +  + K  + + +L
Sbjct: 1059 IVHVIRMVAQGTVEDKMYELQQKKKHLVEEVL 1090


>gi|261368900|ref|ZP_05981783.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282568998|gb|EFB74533.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 811

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 32  CLQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF 88
             +     +  D+  + +  V   K+ AL++++     +   I++  ++ S L  +++  
Sbjct: 622 LRECCCHPLLLDDTINVEGVVDSCKLDALKILVADLFESGHKILIFSNYTSMLHLIRQEL 681

Query: 89  PQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +                +    ++++ +    +      + G GLNL    ++++ +  
Sbjct: 682 EKRSEYKANLFYLDGKTQQRNLLVEQFEKASAGIFLISIKAGGVGLNLTSAQDVII-YDP 740

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WW+    QQ I+R       + G ++AV VY L+A NTI+E +L   + K    + L+N 
Sbjct: 741 WWNPFVEQQAIDR-----AYRIGQQQAVNVYKLVAANTIEEKILDMQKDKEQDFEELING 795

Query: 198 LKKE 201
           +  +
Sbjct: 796 ISTD 799


>gi|302874211|ref|YP_003842844.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307689525|ref|ZP_07631971.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302577068|gb|ADL51080.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 1078

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 83/214 (38%), Gaps = 29/214 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE 54
            K Y  + + +  +L  E  E           +   +  Q+    A + D+ K        
Sbjct: 853  KLYFAYVKHIQGELDDEVKEKGFNNSKIKILAALTRLRQICCDPASFLDDYK----GGSG 908

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQ 102
            K +AL  ++ +  A    +++   F S L  ++K   + +   K              + 
Sbjct: 909  KYEALSEVLAEVLAGNHKVLLFSQFTSVLKNIEKLLTKNKITYKYLDGSTKSQERLKIVD 968

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E+N     +      + G GLNL  G ++++ F  WW+     Q  +R       + G K
Sbjct: 969  EFNNDDSQVFLISLKAGGTGLNLT-GADVVIHFDPWWNPSVENQATDR-----AHRIGQK 1022

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V V  LI++ TI+E + +  R K+ +   +L+
Sbjct: 1023 NTVEVIKLISKGTIEEKIEKLQRKKTEVIKNVLD 1056


>gi|327474515|gb|EGF19920.1| Snf2 family protein [Streptococcus sanguinis SK408]
          Length = 1033

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIENELDKLGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|182416600|ref|ZP_02948017.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237669036|ref|ZP_04529020.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182379558|gb|EDT77042.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237657384|gb|EEP54940.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1077

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 24/208 (11%)

Query: 4    YHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y ++ + L     +            S   K  Q+        +  +       KI AL 
Sbjct: 857  YAEYAKNLIQKKVESDEFKKSKIEILSYVTKLRQICLDPSVIMDNYN---GTSGKIDALI 913

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR-TLDKDPCTIQEWNEGK 108
             ++E++      ++V   F S L  +            +  G  T  +    + E+N+G 
Sbjct: 914  ELLEQSIEGDHKVLVFSQFTSVLKNISTILKENNMSYCYLDGSMTSSERMKMVNEFNDGN 973

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    +I++ F  WW+     Q  +R       + G K  V V 
Sbjct: 974  KNIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQATDR-----AHRLGQKNVVEVI 1027

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LIA  TI+E ++    +K  + D +L+
Sbjct: 1028 KLIASGTIEEKIIDLQNSKRELIDKVLS 1055


>gi|194397845|ref|YP_002038154.1| SNF2 family protein [Streptococcus pneumoniae G54]
 gi|194357512|gb|ACF55960.1| SNF2 family protein [Streptococcus pneumoniae G54]
          Length = 1032

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEIXSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|57651290|ref|YP_185255.1| hypothetical protein SACOL0363 [Staphylococcus aureus subsp. aureus
           COL]
 gi|57285476|gb|AAW37570.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
          Length = 116

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 90  QGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           +   L+KD    +  WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +QQ  
Sbjct: 4   KLNELEKDSKAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQAN 63

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R+      + G      +++++  NTID+ V + L+ K   Q+ L+ A+K     
Sbjct: 64  ARL-----YRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARIAK 114


>gi|325687137|gb|EGD29160.1| Snf2 family protein [Streptococcus sanguinis SK72]
          Length = 1033

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  + E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELFEQIQDGNRRVLIFSQFRGMLDIIENELDKLGMDSFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|318057744|ref|ZP_07976467.1| helicase [Streptomyces sp. SA3_actG]
          Length = 939

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVH--DEKIK 57
            Y    RE    ++     +             Q+ N  A Y  E      +     K+ 
Sbjct: 710 LYEAVVRESLAAIESAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 769

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
           AL+ ++    A    ++V   +      L                G  +D     +  + 
Sbjct: 770 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVDARDQLVDRFQ 829

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+     Q  +R       + G  R V
Sbjct: 830 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEDQATDR-----AHRIGQTRHV 883

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 884 QVHRLLAEGTVEDRIADLVAGKQALADAVL 913


>gi|327490072|gb|EGF21860.1| Snf2 family protein [Streptococcus sanguinis SK1058]
          Length = 1033

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LAMLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +  ++L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSIILDGAEAK 1016


>gi|77361926|ref|YP_341500.1| DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876837|emb|CAI89054.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1048

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
             +K  Q+       +      +    K++ L   +         +I+   F S L  + +
Sbjct: 860  LLKLRQICCHPKLIEPT---TQAGSAKLEWLSNRLPLMLSLGRKVIIFSQFTSALDLIAE 916

Query: 87   AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +         G+T  +D   I E+  G   +      + G GLNL    + ++ +  
Sbjct: 917  RLKEININFSLLTGQTRQRD-KVIDEFTSGATSVFLISLKAGGTGLNLTQ-ADTVIHYDP 974

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            WW+    +Q  +R       + G    VFVY LI  N+I+E V +  + K  + D L 
Sbjct: 975  WWNPAVEKQATDR-----AYRIGQTNPVFVYKLIMANSIEEKVFKMQQDKQALVDALF 1027


>gi|47565536|ref|ZP_00236577.1| Snf2 family protein [Bacillus cereus G9241]
 gi|47557526|gb|EAL15853.1| Snf2 family protein [Bacillus cereus G9241]
          Length = 1064

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            K + E    L  + +        +   +  Q+ N  A++ D+ K        K + L  I
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK----GSSAKFEQLLDI 904

Query: 63   IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
            +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 905  LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 965  LFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 1018

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  TI+  + +   +K  +   ++ 
Sbjct: 1019 VAHGTIEGKMHELQESKKNLIAEVIE 1044


>gi|253700367|ref|YP_003021556.1| SNF2-related protein [Geobacter sp. M21]
 gi|251775217|gb|ACT17798.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1386

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L G   +E          ++ ++  +          +     +   K+
Sbjct: 1165 LYEAIRKSALDNLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDTP---IPSTKL 1221

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
             A   I+E+   N    +V   F   L  +++   +               +    +  +
Sbjct: 1222 AAFGEIVEELRENRHKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKRRVDAF 1281

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   L      + G GLNL    + ++    WW+     Q  +R       + G KR 
Sbjct: 1282 QSGSGDLFLISLKAGGVGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQKRP 1335

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y L+ + TI+E ++   + K  + D LL+
Sbjct: 1336 VTIYRLVTRGTIEEKIVGLHQQKRGLADSLLD 1367


>gi|261408135|ref|YP_003244376.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261284598|gb|ACX66569.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 1111

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     E    K++ L   IE+       ++V   F   L  
Sbjct: 916  LAGITRLRQICCHPALFVEG---YEGGSAKLEQLLETIEECRLAGRRMLVFSQFTGMLNL 972

Query: 84   LQKA---------FPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G+T   +   + + +NEG+  +      + G GLNL  G + ++
Sbjct: 973  IAGELGYRGIPFFYLDGQTPGSERVELCERFNEGEREVFLISLKAGGTGLNLT-GADTVI 1031

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    QQ ++R       + G K+ V V   ++Q+TI++ ++   + K  + + 
Sbjct: 1032 LYDLWWNPAVEQQAMDR-----AHRIGQKKVVQVIRFVSQDTIEDKMVALQQKKKDLIEE 1086

Query: 194  LLN 196
            L+ 
Sbjct: 1087 LVQ 1089


>gi|307706009|ref|ZP_07642832.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK564]
 gi|307620428|gb|EFN99541.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK564]
          Length = 1032

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKVEQELPDLGMTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|224367136|ref|YP_002601299.1| SWI/SNF helicase family protein [Desulfobacterium autotrophicum HRM2]
 gi|223689852|gb|ACN13135.1| SWI/SNF helicase family protein [Desulfobacterium autotrophicum HRM2]
          Length = 1392

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y   + +   +++              ++  K  QL               +   K+K 
Sbjct: 1171 LYEAHRLKAVENIEAAEDTPGQKHLRILAELTKLRQLCCNPSLVLPGTK---ITSSKLKV 1227

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNE 106
               ++++   N    +V   F   LA L+K             G T   +    I  +  
Sbjct: 1228 FGDMVDELLENNHKALVFSQFVGHLAILKKFLDAKKISYQYLDGSTRAGQRRERINAFQS 1287

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   L      + G GLNL    + ++    WW+     Q  +R       + G  R V 
Sbjct: 1288 GVGELFLISLKAGGFGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AYRIGQTRPVT 1341

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+ + +I+E +L   R K  + + LL  
Sbjct: 1342 VYRLVVKGSIEERILDLHREKRDLAESLLTG 1372


>gi|326798632|ref|YP_004316451.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326549396|gb|ADZ77781.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 1176

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 2    KQYHK----FQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y K    F+ EL   ++    +A        +K  Q+ N        K     H  K+
Sbjct: 954  RVYEKYLQYFRGELANKIEEGRDKATMFVLEALMKLRQICNSPAIL--PKETYPNHSSKL 1011

Query: 57   KALEV-IIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLD--KDPCTIQEW 104
            + ++  I+EK     +++   F S L           +  A+  G+T    +     +  
Sbjct: 1012 EEIQEHILEKTQGHKLLIFSSFTSMLGLLKIELEKMGIAYAYLDGKTSGEQRQQEVTRFQ 1071

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G GLNL    + +     WW+     Q I+R       + G ++ 
Sbjct: 1072 EQDDCRVFLISLKAGGTGLNLT-AADYVYILDPWWNPAAEAQAIDRC-----YRIGQEKH 1125

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y +I ++TI+E +L     K  + D L+ 
Sbjct: 1126 VMAYRMICKDTIEEKILNMQANKKALADSLIQ 1157


>gi|304406180|ref|ZP_07387837.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
 gi|304344764|gb|EFM10601.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
          Length = 1110

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K ++E    L  ++   +     +   +  Q+      + E+         K
Sbjct: 887  KLYTAYLAKLRQETLKHLDEDDFGRQRIKILAGITRLRQICCHPGLFVED---YRGGSAK 943

Query: 56   IKALEVIIE--KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QE 103
            ++ L  I+E  +     +++   F   L  +++          +  G T  ++   + Q 
Sbjct: 944  LEQLLDIVEDCRGAGKRMLLFSQFTGMLGIIREELGVRGVPLFYLDGSTPPEERAELCQR 1003

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G + ++ + +WW+    QQ  +R       + G K 
Sbjct: 1004 FNAGEKEVFLISLKAGGTGLNLT-GADTVIMYDMWWNPAVEQQAADR-----AHRIGQKN 1057

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ T+++ +      K  + D ++ 
Sbjct: 1058 VVQVIRLVAQGTVEDKMHALQERKKQLIDEVIQ 1090


>gi|220914252|ref|YP_002489561.1| non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
 gi|219861130|gb|ACL41472.1| Non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
          Length = 1160

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+      D       V   K+ 
Sbjct: 940  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDVSLVDPA--LSAVRSSKLD 997

Query: 58   ALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
             L   +E   A     ++   F           D   ++  +  G T ++    + E+  
Sbjct: 998  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLDEEEIEYCYLDGGTRNR-ADVVSEFKN 1056

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + +     WW+     Q ++R       + G  R V 
Sbjct: 1057 GSAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPASEAQAVDR-----THRIGQARNVM 1110

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A++TI+E V+     KS +   ++  
Sbjct: 1111 VYRLVAKDTIEEKVMALKTRKSQLFADVMEG 1141


>gi|322375571|ref|ZP_08050083.1| Snf2 family protein [Streptococcus sp. C300]
 gi|321279279|gb|EFX56320.1| Snf2 family protein [Streptococcus sp. C300]
          Length = 1031

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 25/209 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            R+    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----YQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLF 113
                   +++   F   L ++++  P          G T   D   + + +N+G+     
Sbjct: 871  VADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQKVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             TI+E + +    K  +   +L+  +   
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESRA 1013


>gi|299822681|ref|ZP_07054567.1| Snf2 family helicase [Listeria grayi DSM 20601]
 gi|299816210|gb|EFI83448.1| Snf2 family helicase [Listeria grayi DSM 20601]
          Length = 1063

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 21/193 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIV 73
            Q +        +   +  Q+      + +     +    K+  L   I+ A  N   +++
Sbjct: 856  QDDETNRMKLLAGLTRLRQICCDPTLFVDG---YQGGSGKLLQLLDTIQTARENGKRMLI 912

Query: 74   AYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGL 123
               F S L  +Q    +         G+T  K+    +  +NEG   +      + G GL
Sbjct: 913  FSQFTSMLGIIQSELKKIGMEYFYMDGQTPSKERVNLVNAFNEGGKDIFLISLKAGGTGL 972

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G + ++ + LWW+    +Q   R       + G K  V V  ++A+ TI+E +   
Sbjct: 973  NLT-GADTVILYDLWWNPAVEEQAASR-----AHRIGQKNVVQVIRMVAKGTIEERIFDL 1026

Query: 184  LRTKSTIQDLLLN 196
             + K  + D ++ 
Sbjct: 1027 QKKKQALIDDIIQ 1039


>gi|302533833|ref|ZP_07286175.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
 gi|302442728|gb|EFL14544.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
          Length = 645

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCT 100
             K+  L+ +++   A    ++V   + +    L++              G  + +    
Sbjct: 472 SGKLALLDELLDTILAEDGSVLVFTQYVTMARILERHLASRGIPSQLLHGGTPVPRREEL 531

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G++P+      + G GLNL   G+ ++ +  WW+    +Q  +R       + G
Sbjct: 532 VDRFQSGEVPVFLLSLKAAGTGLNLTRAGH-VIHYDRWWNPAVEEQATDR-----AYRIG 585

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + V V+ +IA+ T+++ + + L  K  + D +L + + 
Sbjct: 586 QTQPVQVHRIIAEGTVEDRIAELLEAKRALADAVLGSGEA 625


>gi|255659992|ref|ZP_05405401.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
 gi|260847745|gb|EEX67752.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
          Length = 1078

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            MK    F RE+     GE        +   +  Q+A     + E          K+  LE
Sbjct: 862  MKSQRDFMREVSLASPGER--RIKILAILTRLRQIACDPALFLES---YHGGSGKLDMLE 916

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK 108
             +IE+A      +++   F + LA + +                        ++E+N G 
Sbjct: 917  ELIEEAIEGGHRLLIFSQFTTMLAHIAERLRRKGLAYFSLDGATPALTRMKLVREFNRGA 976

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL  G +++V F  WW+     Q  +R       + G +  V V+
Sbjct: 977  VPIFLISLKAGGTGLNLT-GADMVVHFDPWWNPAVEDQATDR-----AYRLGQRNNVQVF 1030

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI + T++E + +    K ++ D ++ 
Sbjct: 1031 KLIMKGTVEEKIYELQEKKKSLIDQMIQ 1058


>gi|26554357|ref|NP_758291.1| helicase/SNF2 domain-containing protein [Mycoplasma penetrans HF-2]
 gi|26454367|dbj|BAC44695.1| helicase with SNF2 domain [Mycoplasma penetrans HF-2]
          Length = 1041

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 77/211 (36%), Gaps = 27/211 (12%)

Query: 4    YHKFQRELYC---DLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +  +        ++ + I    +   S   K  Q+        E      ++  K   
Sbjct: 819  YAELSKSQIAIRKGIEDKTINKQGAFIFSVLTKLRQICCSPKLSYENSD---INGSKFNL 875

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWN 105
               +I+    N   I++   F S +  + +   + +             ++     +  N
Sbjct: 876  CIDLIKDLIKNNDKILLFSQFTSMIDLIAQELKKLKINFLVLTGETNKKERMELVNEFNN 935

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I +      + G GL L    N ++ +  WW+L    Q  +R       + G ++ V
Sbjct: 936  KNNIKIFLISLKAGGTGLTLT-SANAVIHYDPWWNLSLENQATDR-----AHRIGQEKNV 989

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            F+Y LI +++I+E +L    +K  I + + +
Sbjct: 990  FIYKLIVKDSIEEKILSLQESKREIINQIFD 1020


>gi|257867846|ref|ZP_05647499.1| Snf2 family protein [Enterococcus casseliflavus EC30]
 gi|257874174|ref|ZP_05653827.1| Snf2 family protein [Enterococcus casseliflavus EC10]
 gi|257801929|gb|EEV30832.1| Snf2 family protein [Enterococcus casseliflavus EC30]
 gi|257808338|gb|EEV37160.1| Snf2 family protein [Enterococcus casseliflavus EC10]
          Length = 1054

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  RE    +   +      +  +   +  Q+      + E+    E    K++ ++
Sbjct: 832  AYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVED---YEGSSGKLEQVK 888

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++  A  N   +++   F S L+ +++   Q         G T  +D    +  +N G+
Sbjct: 889  DLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVDAFNSGE 948

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V+
Sbjct: 949  KDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAAGR-----AHRIGQKNVVEVW 1002

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +IA+ TI+E +    + K  +   ++  
Sbjct: 1003 RMIAEGTIEERMDALQQEKRELFQKVIQG 1031


>gi|327462003|gb|EGF08332.1| Snf2 family protein [Streptococcus sanguinis SK1057]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|257876739|ref|ZP_05656392.1| Snf2 family protein [Enterococcus casseliflavus EC20]
 gi|257810905|gb|EEV39725.1| Snf2 family protein [Enterococcus casseliflavus EC20]
          Length = 1054

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  RE    +   +      +  +   +  Q+      + E+    E    K++ ++
Sbjct: 832  AYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVED---YEGSSGKLEQVK 888

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++  A  N   +++   F S L+ +++   Q         G T  +D    +  +N G+
Sbjct: 889  DLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVDAFNSGE 948

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V+
Sbjct: 949  KDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAAGR-----AHRIGQKNVVEVW 1002

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +IA+ TI+E +    + K  +   ++  
Sbjct: 1003 RMIAEGTIEERMDALQQEKRELFQKVIQG 1031


>gi|328946828|gb|EGG40965.1| Snf2 family protein [Streptococcus sanguinis SK1087]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|327470402|gb|EGF15858.1| Snf2 family protein [Streptococcus sanguinis SK330]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|324993643|gb|EGC25562.1| Snf2 family protein [Streptococcus sanguinis SK405]
 gi|324995045|gb|EGC26958.1| Snf2 family protein [Streptococcus sanguinis SK678]
 gi|327462912|gb|EGF09233.1| Snf2 family protein [Streptococcus sanguinis SK1]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|125718601|ref|YP_001035734.1| Snf2 family protein, putative [Streptococcus sanguinis SK36]
 gi|125498518|gb|ABN45184.1| Snf2 family protein, putative [Streptococcus sanguinis SK36]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKMSMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|325696368|gb|EGD38259.1| Snf2 family protein [Streptococcus sanguinis SK160]
          Length = 1033

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|325690932|gb|EGD32932.1| Snf2 family protein [Streptococcus sanguinis SK115]
          Length = 1033

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  ++       + I        S  ++  Q+ +    + E+    E    K+++
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMED---YEGESGKLES 867

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNE 106
            L  ++E+       +++   F   L  ++    +         G T  K+   +   +N+
Sbjct: 868  LRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFND 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVE 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 982  VYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|302561960|ref|ZP_07314302.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302479578|gb|EFL42671.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 652

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCL----QLANG-AVYYDEEKHWKEVHDEKIK 57
            Y    RE   ++ G   +        VK L    Q+ N  A +  EE+        K++
Sbjct: 425 LYEAVVREALAEIAG--ADGVTRRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLE 482

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
            L+ +++      A ++V   +      L++              G  +      ++ + 
Sbjct: 483 LLDELLDTVLTEGAGVLVFTQYVRMARLLERHLAARGVPAQFLHGGTPVAGREAMVRRFQ 542

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V
Sbjct: 543 DGEVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPV 596

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ +IA+ T+++ +   L  K  + D +L
Sbjct: 597 QVHRIIAEGTVEDRIAALLERKRELADAVL 626


>gi|332074276|gb|EGI84753.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA17545]
          Length = 1032

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGRHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|270292306|ref|ZP_06198517.1| Snf2 family protein [Streptococcus sp. M143]
 gi|270278285|gb|EFA24131.1| Snf2 family protein [Streptococcus sp. M143]
          Length = 1031

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 25/209 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            RE    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RERLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----YQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLF 113
                   +++   F   L ++++  P          G T   D   + + +N+G+     
Sbjct: 871  VADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQMVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             TI+E + +    K  +   +L+  +   
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESRA 1013


>gi|149007570|ref|ZP_01831205.1| Snf2 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147760929|gb|EDK67899.1| Snf2 family protein [Streptococcus pneumoniae SP18-BS74]
          Length = 1032

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++  P          G T  K+   + + +N+G+      
Sbjct: 873  ADGRHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|315655316|ref|ZP_07908216.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490256|gb|EFU79881.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 988

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKALEVIIEKANAAP-----IIVAYHF 77
           N  +   +  QLA  A   D + H         ++ LE + + +N  P      +V   F
Sbjct: 787 NILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGLRDDSNLNPRQRHQALVFSQF 846

Query: 78  NSDLARLQKAFPQGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S LA L++   Q             D+D   +  +  G++ +      + G GLNL   
Sbjct: 847 TSFLAILRERLDQAGIDYAYLDGTSRDRDRQ-VARFQNGEVDVFLISLKAGGFGLNLTQ- 904

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +     WW+     Q ++R       + G KR V VY L+A +TI++ VL+    K 
Sbjct: 905 ADYVFLTDPWWNPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLELQERKR 959

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 960 DLIGAVLSG 968


>gi|157150075|ref|YP_001449829.1| Snf2 family protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074869|gb|ABV09552.1| Snf2 family protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1029

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 23/194 (11%)

Query: 21   EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHF 77
            +     S  ++  Q+    A++ DE     +    K+ +L  ++E+ +     +++   F
Sbjct: 829  DKIEILSGLMRLRQICDTPALFLDE----YQGDSGKLDSLRELLEQIHSSNHRVLIFSQF 884

Query: 78   NSDLARLQKAF---------PQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQY 127
               L  +++             G T  KD   +   +N+G+         + G GLNL  
Sbjct: 885  RGMLDLIEQELQSLEMESFKITGSTPAKDRQEMTTAFNDGQKDAFLISLKAGGVGLNLT- 943

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++   LWW+     Q I R       + G +R V VY LI + TI+E + +   +K
Sbjct: 944  GADTVILVDLWWNPAVEAQAIGR-----AHRMGQERNVEVYRLITRGTIEEKIQELQESK 998

Query: 188  STIQDLLLNALKKE 201
              +   +L+  +  
Sbjct: 999  KNLISTILDGTESR 1012


>gi|325283092|ref|YP_004255633.1| SNF2-related protein [Deinococcus proteolyticus MRP]
 gi|324314901|gb|ADY26016.1| SNF2-related protein [Deinococcus proteolyticus MRP]
          Length = 1322

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 24/205 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEV 61
            + +RE   + +G    +       ++  Q A               ++ K +     L  
Sbjct: 972  RVRRE--LEARGLARSSVTILDALLRLRQAATDPRLVRLSAAASVQNNAKREWLRSQLPE 1029

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLL 112
            ++++     ++V   F S L  L+    +         G+T  +    I+++  G   + 
Sbjct: 1030 LVQE--GHRVLVFSQFASLLGLLEADLKELGISYSKLTGQTR-RRAEAIEQFQSGHADVF 1086

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++    WW+     Q  +R       + G  + VFVY LIA
Sbjct: 1087 LISLKAGGVGLNLT-AADTVIHLDPWWNPAAEAQATDR-----AYRIGQDQPVFVYKLIA 1140

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
              +++E +L     K+ +   +L+ 
Sbjct: 1141 AGSVEERILDLQARKAALASGVLDG 1165


>gi|315613488|ref|ZP_07888396.1| Snf2 family protein [Streptococcus sanguinis ATCC 49296]
 gi|315314484|gb|EFU62528.1| Snf2 family protein [Streptococcus sanguinis ATCC 49296]
          Length = 1031

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 25/209 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            R+    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----FQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLF 113
                   +++   F   L ++++  P          G T   D   + + +N+G+     
Sbjct: 871  VADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQMVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             TI+E + +    K  +   +L+  +   
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESRA 1013


>gi|325570841|ref|ZP_08146524.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156351|gb|EGC68533.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
          Length = 1054

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  RE    +   +      +  +   +  Q+      + E+    E    K++ ++
Sbjct: 832  AYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVED---YEGSSGKLEQVK 888

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++  A  N   +++   F S L+ +++   Q         G T  +D    +  +N G+
Sbjct: 889  DLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVNAFNSGE 948

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V+
Sbjct: 949  KDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAAGR-----AHRIGQKNVVEVW 1002

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +IA+ TI+E +    + K  +   ++  
Sbjct: 1003 RMIAEGTIEERMDALQQEKRELFQKVIQG 1031


>gi|119470636|ref|ZP_01613304.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
 gi|119446106|gb|EAW27384.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
          Length = 1048

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 24/198 (12%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV---IIEKA 66
            +L+ + QG            +K  Q+       + +    +    K++ L     ++   
Sbjct: 842  DLFAE-QGVQKSKLAFLEALLKLRQICCHPKLIEPD---TQAGSAKLEWLSTHLPLMLSL 897

Query: 67   NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +I+   F S L  + K         +   G+T  +D   I E+  GK  +      
Sbjct: 898  -GRKVIIFSQFTSALDLIAKQLSELDINFSLLTGQTRHRD-KVIDEFTSGKTSVFLISLK 955

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + ++ F  WW+    +Q  +R       + G    VFVY LI  ++I+
Sbjct: 956  AGGTGLNLTQ-ADTVIHFDPWWNPAVEKQATDR-----AYRIGQTNPVFVYKLIMSHSIE 1009

Query: 178  ELVLQRLRTKSTIQDLLL 195
            + V +    K  + D L 
Sbjct: 1010 QKVFKMQEDKQALVDALF 1027


>gi|309774808|ref|ZP_07669829.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917366|gb|EFP63085.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 520

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 25/184 (13%)

Query: 26  ASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSD- 80
            S   +  QL      +Y +           KI A    IE  + +   +++   F S  
Sbjct: 329 LSMLTRLRQLCCDPRLLYENYNGV-----GAKISACMEFIENCRESGKKVLLFSQFTSLL 383

Query: 81  --------LARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                      +     +G T   +    +  +N    P+      + G GLNL     +
Sbjct: 384 SLLEKELVRQDIPYYLLKGSTPKLQRQQLVNSFNSDDTPVFLISLKAGGTGLNLT-SAEV 442

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW++    Q  +R       + G    V V  LIA++TI+E ++Q    K  + 
Sbjct: 443 VIHFDPWWNVSAQNQATDR-----AYRIGQHNNVQVVKLIAKDTIEEKIMQLQSLKQDLS 497

Query: 192 DLLL 195
           D ++
Sbjct: 498 DSII 501


>gi|318081201|ref|ZP_07988533.1| helicase [Streptomyces sp. SA3_actF]
          Length = 770

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVH--DEKIK 57
            Y    RE    ++     +             Q+ N  A Y  E      +     K+ 
Sbjct: 541 LYEAVVRESLAAIESAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 600

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
           AL+ ++    A    ++V   +      L                G  +D     +  + 
Sbjct: 601 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVDARDQLVDRFQ 660

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+     Q  +R       + G  R V
Sbjct: 661 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEDQATDR-----AHRIGQTRHV 714

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 715 QVHRLLAEGTVEDRIADLVAGKQALADAVL 744


>gi|311032686|ref|ZP_07710776.1| SWF/SNF family helicase [Bacillus sp. m3-13]
          Length = 1044

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 77/205 (37%), Gaps = 23/205 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + +    L  + +        +   +  Q+      +       +    K + L  +I
Sbjct: 829  KLRHDTLKHLNKDTLRKNKIRILAGLTRLRQICCHPSLFVNG---YKGSSAKFEMLLQLI 885

Query: 64   EKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-QEWNEGKIPL 111
            E++      +++   F   L  +            +  G+T  ++     + +N G+   
Sbjct: 886  EESQRSGRRVLIFSQFTKMLELIGRELAYQGLPYFYLDGQTPSEERVERCERFNSGERDF 945

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    +Q  +R       + G  + V V  L+
Sbjct: 946  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEEQAADR-----AHRMGQTQTVQVIKLV 999

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            A+ TI+E + +    K  + + +++
Sbjct: 1000 ARGTIEEKMNELQDKKRHLIEEIID 1024


>gi|313898599|ref|ZP_07832134.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956483|gb|EFR38116.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 1077

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 25/184 (13%)

Query: 26   ASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS-- 79
             S   +  QL      +Y +           KI A    IE    +   +++   F S  
Sbjct: 886  LSMLTRLRQLCCDPRLLYENYNGI-----GAKISACMEFIESCRESGKKVLLFSQFTSLL 940

Query: 80   -------DLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                       +     +G T   +    +  +N    P+      + G GLNL     +
Sbjct: 941  SLLEKELIRQDIPYYLLKGSTPKLQRQQLVNSFNSDDTPIFLISLKAGGTGLNLT-SAEV 999

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ F  WW++    Q  +R       + G    V V  LIA++TI+E ++Q    K  + 
Sbjct: 1000 VIHFDPWWNVSAQNQATDR-----AYRIGQHNNVQVVKLIAKDTIEEKIMQLQSLKQDLS 1054

Query: 192  DLLL 195
            D ++
Sbjct: 1055 DSII 1058


>gi|56421797|ref|YP_149115.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56381639|dbj|BAD77547.1| DNA/RNA helicase (SNF2 family) [Geobacillus kaustophilus HTA426]
          Length = 919

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 79/218 (36%), Gaps = 33/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +   +       E  +  +  ++    LQ+ NG        A+Y  E +  + V  
Sbjct: 687 ALYEQLVNDTL-----ERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVER 741

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  +IE+  AN    ++   +      +Q+               G        
Sbjct: 742 SHKLEKLIELIEQIRANDESCLIFTQYVRMGEMIQELLSDLFDERVLFLHGGVPKQTRDR 801

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+   K P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 802 MVDEFQAKKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 855

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V V+ LI   TI+E + + L  K  + D++   
Sbjct: 856 GQTKFVHVHKLITTGTIEEKIDEMLEQKQALADVITEG 893


>gi|298346771|ref|YP_003719458.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236832|gb|ADI67964.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 988

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKALEVIIEKANAAP-----IIVAYHF 77
           N  +   +  QLA  A   D + H         ++ LE + + +N  P      +V   F
Sbjct: 787 NILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGLRDDSNLNPRQRHQALVFSQF 846

Query: 78  NSDLARLQKAFPQGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S LA L++   Q             D+D   +  +  G++ +      + G GLNL   
Sbjct: 847 TSFLAILRERLDQAGIDYAYLDGTSRDRDRQ-VARFQNGEVDVFLISLKAGGFGLNLTQ- 904

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +     WW+     Q ++R       + G KR V VY L+A +TI++ VL+    K 
Sbjct: 905 ADYVFLTDPWWNPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLELQEKKR 959

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 960 DLIGAVLSG 968


>gi|304389525|ref|ZP_07371488.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327335|gb|EFL94570.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 988

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKALEVIIEKANAAP-----IIVAYHF 77
           N  +   +  QLA  A   D + H         ++ LE + + +N  P      +V   F
Sbjct: 787 NILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGLRDDSNLNPRQRHQALVFSQF 846

Query: 78  NSDLARLQKAFPQGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S LA L++   Q             D+D   +  +  G++ +      + G GLNL   
Sbjct: 847 TSFLAILRERLDQAGIDYAYLDGTSRDRDRQ-VARFQNGEVDVFLISLKAGGFGLNLTQ- 904

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +     WW+     Q ++R       + G KR V VY L+A +TI++ VL+    K 
Sbjct: 905 ADYVFLTDPWWNPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLELQEKKR 959

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 960 DLIGAVLSG 968


>gi|315656771|ref|ZP_07909658.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492726|gb|EFU82330.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 988

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKALEVIIEKANAAP-----IIVAYHF 77
           N  +   +  QLA  A   D + H         ++ LE + + +N  P      +V   F
Sbjct: 787 NILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGLRDDSNLNPRQRHQALVFSQF 846

Query: 78  NSDLARLQKAFPQGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S LA L++   Q             D+D   +  +  G++ +      + G GLNL   
Sbjct: 847 TSFLAILRERLDQAGIDYAYLDGTSRDRDRQ-VARFQNGEVDVFLISLKAGGFGLNLTQ- 904

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +     WW+     Q ++R       + G KR V VY L+A +TI++ VL+    K 
Sbjct: 905 ADYVFLTDPWWNPAAEAQAVDR-----AHRLGQKRFVNVYRLVATDTIEQRVLELQEKKR 959

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 960 DLIGAVLSG 968


>gi|313676698|ref|YP_004054694.1| snf2-related protein [Marivirga tractuosa DSM 4126]
 gi|312943396|gb|ADR22586.1| SNF2-related protein [Marivirga tractuosa DSM 4126]
          Length = 976

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 30/213 (14%)

Query: 3   QYHKFQ---RELYCD-LQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           +Y + +   R++  D ++ + I +          +  Q+AN     D E    +    K+
Sbjct: 756 KYEEVKNYFRDMILDEIEKKGIRSSQMILLQGLTQLRQIANHPKMVDPE---YQGDSGKM 812

Query: 57  K----ALEVIIEKANAAPIIVAYHF-NS--------DLARLQKAFPQGRTLDKDPCTIQE 103
           +     L  II  +    +++   F           + + ++ A+  G T D+       
Sbjct: 813 EDVTHMLTSII--SEGHKVLIFSQFVKHLSLFKEFMERSHIKYAYLDGTTKDRQKQVKLF 870

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                + +      + G GLNL    + +     WW+    QQ ++R       + G K+
Sbjct: 871 QENQDLSVFLISLKAGGLGLNLT-AADYVFLLDPWWNPAIEQQAVDR-----AHRIGQKQ 924

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF Y  I +NT++E +L     K T+   L++
Sbjct: 925 QVFTYKFITKNTVEEKILALQEKKLTLARDLIS 957


>gi|26988870|ref|NP_744295.1| Snf2/Rad54 family helicase [Pseudomonas putida KT2440]
 gi|24983677|gb|AAN67759.1|AE016407_3 helicase, SNF2/RAD54 family [Pseudomonas putida KT2440]
          Length = 666

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASC 119
              +++   F S LA +++   + +                +Q++ +G+  +      + 
Sbjct: 509 GRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFLISLKAG 568

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + ++ F  WW+     Q  +R       + G  + VFV+ LI + T++E 
Sbjct: 569 GVGLNLT-AADTVIHFDPWWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEK 622

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           +    + K+ +   LL+  + 
Sbjct: 623 IQLLQQEKAALAASLLDGGQA 643


>gi|284038229|ref|YP_003388159.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283817522|gb|ADB39360.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1127

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 19/205 (9%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  R      +  +I     +      K  Q+ N  V  ++E  +      KI  L 
Sbjct: 910  AYEQEFRNYLLSTKEGDIPRAKLHILQGLTKLRQICNAPVLLNDE-EFYGNSSAKIDVLM 968

Query: 61   VIIE-KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIP 110
              IE K+    I+V   F + L  ++K             G+T D+     +   +  + 
Sbjct: 969  EQIENKSPNHKILVFSQFVTMLDLIKKELEARQIGFEYLTGQTNDRQAIVNRFQTDASVR 1028

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    + +     WW+     Q I+R       + G K+ V    L
Sbjct: 1029 VFLISLKAGGTGLNLTQ-ADYVYLVDPWWNPAVENQAIDR-----SYRIGQKKNVVAVRL 1082

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I  NTI+E +L    TK  + D L+
Sbjct: 1083 ICPNTIEEKILLLQETKQELADKLV 1107


>gi|110639993|ref|YP_680203.1| SNF2 family DNA/RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282674|gb|ABG60860.1| superfamily II DNA/RNA helicase, SNF2 family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 977

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 26/213 (12%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++Y K +   R L  +   E   A +         K  Q+AN     ++     E    K
Sbjct: 756 QEYEKTKSNYRNLILESIDEKGLAGSQILLLQGLTKLRQIANHPSLVEDT---FEGTSGK 812

Query: 56  IKALEVIIEKAN--AAPIIVAYHF-NS--------DLARLQKAFPQGRTLDKDPCTIQEW 104
           ++ +  +++ A      I+V   F           D A ++ A+  G+T D+     +  
Sbjct: 813 MEDVNYMLDNALELGHKILVFSQFVKHLHLYAKLLDKAGIKYAYLDGQTRDRQAEVERFQ 872

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           NE  I +      + G GLNL    + +     WW+     Q ++R       + G K  
Sbjct: 873 NEEGIRVFLISLKAGGLGLNLT-AADYVFLLDPWWNPAVEAQAVDR-----AYRIGQKNT 926

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y  I +NT++E +L   + K  + + L+++
Sbjct: 927 VFTYKFITKNTVEEKILNLQKNKLKLANDLISS 959


>gi|239828513|ref|YP_002951137.1| non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
 gi|239808806|gb|ACS25871.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
          Length = 925

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 42/229 (18%)

Query: 5   HKFQRELYCDLQGENIE------------AFNSA--SKTVKCLQLANG--------AVYY 42
            K +++ YC L  E               A N++  ++    LQ+ NG        A+Y 
Sbjct: 677 DKLEQKEYCPLTAEQAALYEQLVNDTLERAKNASPFARRGLILQMLNGVKQICDHPALYL 736

Query: 43  DEEKHWKEVH-DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
            E +  + V    K++ L  +IE+  AN    ++   +      +Q+             
Sbjct: 737 KERRPRQLVERSHKLEKLVELIEQIRANDESCLIFTQYVRMGEMIQQLLSDLFDERVLFL 796

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G         ++E+   K P+      + G GLNL    N ++ F  WW+     Q  
Sbjct: 797 HGGVPKQTRDRMVEEFQARKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQAT 855

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G  + V V+ LI   TI+E + + L  K  + D++   
Sbjct: 856 DR-----AYRIGQTKFVHVHKLITVGTIEEKIDEMLEQKQALADIITEG 899


>gi|308535304|ref|YP_002139277.2| helicase [Geobacter bemidjiensis Bem]
 gi|308052649|gb|ACH39481.2| helicase, putative [Geobacter bemidjiensis Bem]
          Length = 1386

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L G   +E          ++ ++  +          +     +   K+
Sbjct: 1165 LYEAIRKSALDNLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDTP---IPSTKL 1221

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
             A   I+E+   N    +V   F   L  +++   +               +    +  +
Sbjct: 1222 AAFGEIVEELRENRHKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKKRVDAF 1281

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   L      + G GLNL    + ++    WW+     Q  +R       + G +R 
Sbjct: 1282 QSGSGDLFLISLKAGGVGLNLT-AADYVIHMDPWWNPAVEDQASDR-----AHRIGQQRP 1335

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y L+ + TI+E ++   + K  + D LL+
Sbjct: 1336 VTIYRLVTRGTIEEKIVGLHQQKRGLADSLLD 1367


>gi|325126030|gb|ADY85360.1| SNF2-related domain:Helicase, C-terminal:SWIM Zn-finger
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 637

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 27/203 (13%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           +  D +G   E     +   +  ++    G +Y D +        EK  A   +I+ A  
Sbjct: 428 MAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE-----SEKRLACVDLIKSAID 482

Query: 67  NAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQEWNEGKIP--LLFA 114
               +++   F S L  L+++            G+T   +    +  +N    P  +   
Sbjct: 483 EGHKVLLFSQFTSMLDLLEESLKAEEIGFLRIDGQTPKARRLTLVNVFNHKDSPAKVFLI 542

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + ++ +  WW++    Q  +R       + G ++ V VY LIA++
Sbjct: 543 SLKAGGTGLNLT-GADTVIHYDPWWNVAAQNQATDR-----AHRIGQEKKVTVYKLIAKD 596

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T++E +L     KS +   +L A
Sbjct: 597 TVEEAILDLQEAKSLLAQGILTA 619


>gi|227540131|ref|ZP_03970180.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
            spiritivorum ATCC 33300]
 gi|227239992|gb|EEI90007.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
            spiritivorum ATCC 33300]
          Length = 1119

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K  RE     +G+ I            K  Q+ N       E    E +  KI+ L 
Sbjct: 900  LYEKEFREFISATEGDEIRKSPMYVLKGLTKLRQICNSTKLLKTEDLSTEDNSAKIETLI 959

Query: 61   VIIEKANA-APIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIP 110
              IE   A   IIV   F S L  +QKA            G+T +++        +    
Sbjct: 960  EQIEDNIAYHKIIVFSQFVSMLYLIQKALSAKGINAYMLTGKTKNREQVVHNFQQQEDNR 1019

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +++     WW+     Q I+R       + G ++ V    L
Sbjct: 1020 VFLISLKAGGTGLNLT-AASLVYLVDPWWNPAVENQAIDR-----AYRIGQQQTVTAVRL 1073

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I  +T++E +++  ++K+ +   L+
Sbjct: 1074 ITPDTVEEKMIKMQQSKNELASALI 1098


>gi|297195014|ref|ZP_06912412.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152588|gb|EDY65843.2| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 969

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPC 99
             K+  L+ ++E   +    ++V   + S  ARL  A    R            + +   
Sbjct: 796 SGKLALLDELLETILSEDGSVLVFTQYVSM-ARLLSAHLTSRAIPSQLLHGGTPITERER 854

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +  G++P+      + G GLNL   G+ ++ +  WW+    +Q  +R       + 
Sbjct: 855 MVDRFQSGEVPVFILSLKAAGTGLNLTRAGH-VIHYDRWWNPAVEEQATDR-----AYRI 908

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V V+ L+ + T+++ + + L +K  + D +L + + 
Sbjct: 909 GQTQPVQVHRLVTEGTVEDRIAEMLASKRALADAVLGSGEA 949


>gi|251795916|ref|YP_003010647.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247543542|gb|ACT00561.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 1088

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y     K + E    L  +     N     +   +  Q+      +  +    E    
Sbjct: 857  KLYVSYLAKLRTETVKHLDNDRSLQQNRIKILAGLTRLRQICCHPALFITD---YEGSSA 913

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-Q 102
            K + L  I+E+  +    +++   F   L+ + K          +  G T   +   +  
Sbjct: 914  KFEQLFEIVEECRSTGKRMLIFSQFTEMLSLISKELVRQGISYFYLDGSTKASERVELCN 973

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +N+G+  +  A   + G GLNL  G + ++ + LWW+    QQ  +R       + G  
Sbjct: 974  RFNDGEKDIFLASLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AHRIGQT 1027

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V  L A  T+++ +      K  + D ++
Sbjct: 1028 KVVQVIRLAAHGTVEDKMYALQERKKNMIDDII 1060


>gi|328887305|emb|CCA60544.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 1036

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             Y    RE    +      A             Q+ N  A Y  EE+   E    K++ L
Sbjct: 806  LYEAVVRETLAAIADAEGMARRGLVVKLLTGLKQICNHPAQYLKEERPRIEGRSGKLELL 865

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
            + +++   A  A  +V   +    ARL K     R            + +    +  +  
Sbjct: 866  DELLDTILAEGACTLVFTQYVGM-ARLLKTHLAARGVRTQFLHGGTPVAEREAMVARFQS 924

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V 
Sbjct: 925  GEVPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQDRPVQ 978

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LIA+ TI++ +   L  K  + D +L
Sbjct: 979  VHRLIAEGTIEDRIATMLDRKRELADTVL 1007


>gi|262282141|ref|ZP_06059910.1| Snf2 family protein [Streptococcus sp. 2_1_36FAA]
 gi|262262595|gb|EEY81292.1| Snf2 family protein [Streptococcus sp. 2_1_36FAA]
          Length = 1032

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 85/210 (40%), Gaps = 26/210 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII 63
             + +     +L  + IE  +     ++  Q+    A++ DE     +    K+ +L  ++
Sbjct: 819  ERMRSATDEELNRDKIEILSG---LMRLRQICDTPALFLDE----YQGDSGKLDSLRELL 871

Query: 64   EKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQ-EWNEGKIPL 111
            E+ +     +++   F   L  +++             G T  KD   +   +N+G+   
Sbjct: 872  EQIHSSNHRVLIFSQFRGMLDLIEQELQSLEMESFKITGSTPAKDRQEMTTAFNDGQKDA 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLN+  G + ++   LWW+     Q I R       + G +R V VY LI
Sbjct: 932  FLISLKAGGVGLNVT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQERNVEVYRLI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 986  TRGTIEEKIQELQESKKNLISTILDGTESR 1015


>gi|163797448|ref|ZP_02191399.1| SWI/SNF family helicase [alpha proteobacterium BAL199]
 gi|159177197|gb|EDP61756.1| SWI/SNF family helicase [alpha proteobacterium BAL199]
          Length = 421

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 4   YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 203 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 259

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEG 107
             +++    N    +V   F + LA ++ A        +              +  +  G
Sbjct: 260 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 319

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL    + +V    WW+     Q  +R+      + G +R V +
Sbjct: 320 TADVFLISLRAGGTGLNLT-AADYVVHLDPWWNPAVEDQASDRV-----HRIGQERPVTI 373

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y LI Q++I+E +L+  R K  +   +L  
Sbjct: 374 YRLIMQDSIEEQILRLHRDKRDLAADILEG 403


>gi|228990815|ref|ZP_04150780.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
 gi|228769341|gb|EEM17939.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
          Length = 1071

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 29/214 (13%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y     K + E    L  + +        +   +  Q+     ++ D+ +        
Sbjct: 848  KLYAAYLAKLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR----GSSA 903

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ----- 102
            K + L  I+E+  +    I++   F   L+ +     ++A P        P   +     
Sbjct: 904  KFEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPACERIELCN 963

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +NEG+  L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K
Sbjct: 964  RFNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQK 1017

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V V  L+A  TI+E + +   +K  +   ++ 
Sbjct: 1018 NTVQVIKLVAHGTIEEKMNELQESKKNLIAEVIE 1051


>gi|325105763|ref|YP_004275417.1| SNF2-related protein [Pedobacter saltans DSM 12145]
 gi|324974611|gb|ADY53595.1| SNF2-related protein [Pedobacter saltans DSM 12145]
          Length = 964

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 20/206 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYD-EEKHWKEVHDEKIKA 58
           K   +++ EL   ++                K  Q+AN  V  + E +       + I  
Sbjct: 747 KTKSEYRNELLKSIENGEFSKSPVQMLQGLTKLRQIANHPVLINHEYEGESSKFTDVIYK 806

Query: 59  LEVIIEKANAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           L+ +IE      ++V   F           D   +  ++  G T  +     +  N+  I
Sbjct: 807 LQSVIEA--GHKVLVFSQFVKQLDLYRNYFDKNHIAYSYLDGSTQQRGKVVEEFKNDKNI 864

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL     + +    WW+    QQ I+R       + G  + VF+Y 
Sbjct: 865 QVFLISIKAGGVGLNLTEADYVFIL-DPWWNPAIEQQAIDR-----SHRIGQTKNVFIYK 918

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I ++T++E +L     K T+   L+
Sbjct: 919 FITKDTVEEKILALQNRKLTVAKSLI 944


>gi|257094070|ref|YP_003167711.1| Non-specific serine/threonine protein kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046594|gb|ACV35782.1| Non-specific serine/threonine protein kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1400

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 27/207 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQL------ANGAVYYDEEKHWKEVHDEKIKALE 60
             +RE   D+      A  + ++     QL      A      + E     +   K++A  
Sbjct: 1182 LRREAASDIDATLDAAPEAQARFNILAQLTRLRRAACDPRLCNPE---FGITGAKVQAFA 1238

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
             +  +  AN    +V   F   L  L+          +         +    +  +  G+
Sbjct: 1239 ELASELIANGHKALVFSQFVDFLQVLREPLDESGVHYQYLDGATPAAERSRRVAAFQAGE 1298

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L      + G GLNL    + +V    WW+     Q + R       + G  R V VY
Sbjct: 1299 GDLFLISLKAGGFGLNLT-AADYVVITDPWWNPAAEDQAMGR-----AHRIGQLRPVTVY 1352

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             L+ + T++E ++     K  + D +L
Sbjct: 1353 RLVTRGTVEERIVDLHHEKRALADSIL 1379


>gi|297621810|ref|YP_003709947.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila WSU 86-1044]
 gi|297377111|gb|ADI38941.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila WSU 86-1044]
          Length = 1156

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 80/207 (38%), Gaps = 21/207 (10%)

Query: 4    YHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K  RE    L   +G +    +  +   +  Q+      + +EK  ++    K   L 
Sbjct: 937  YAKSAREELSQLVKKEGFDKVQIHVLATLTRLKQICCHPAIFAKEK-AEDGDSSKYDMLV 995

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI 109
             +++         ++   +   L  ++K          +  G T ++     +   +  I
Sbjct: 996  ELLQTLIEGGHKTVIFSQYTKMLQIMRKDLQTLGIRFEYLDGATKNRMNIVKKFNEDHNI 1055

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL  G + ++ + +WW+     Q  +R+      + G  R+V  Y 
Sbjct: 1056 PVFLVSLKAGGSGLNL-VGADTVIHYDMWWNPAVENQATDRV-----HRIGQTRSVSSYK 1109

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+   TI+E +L+    K  +   ++N
Sbjct: 1110 LVTMGTIEEKILELQERKKGLVKKVIN 1136


>gi|255037622|ref|YP_003088243.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
 gi|254950378|gb|ACT95078.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
          Length = 1261

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQ----RELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F+    +E+   L  E +   +       +K  Q+ +                 K
Sbjct: 1039 KVYDTFRERYRQEIAEKLATEGLNKSSFLILEALLKLRQICDSPSIL-SGDEDFGNESAK 1097

Query: 56   IKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN 105
            ++ +   I E A+   I++   F   L  ++K   +         G+T+D+     +  N
Sbjct: 1098 LEEITREIEENASNHKILIFSQFLGMLDLIRKHLEKMNIPYEYLDGQTVDRAGRVNRFQN 1157

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +      + G GLNL    + +     WW+       +ER  + R  + G  R V
Sbjct: 1158 DDTCRVFLMSLKAGGVGLNLTE-ADYVYLVDPWWN-----PAVERQAIDRTHRIGQTRKV 1211

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F Y +I ++TI+E +L   + K  + + L+  
Sbjct: 1212 FAYKMICKDTIEEKILLLQQRKQDLAEDLVGG 1243


>gi|240170156|ref|ZP_04748815.1| SNF2-related protein [Mycobacterium kansasii ATCC 12478]
          Length = 1077

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R+    L  +     F          Q+A      D           KI  L   + 
Sbjct: 865  QRERQKVLGLLDDIQRNRFTILKSLTVLRQMALHPGLVDAAHDALVC--AKIDVLVEQLR 922

Query: 65   --KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                     +V   F   L R++           +  GRT ++ P  IQ++ EG  P+  
Sbjct: 923  DVADGGHRALVFSQFTRFLGRVRDRLGAEGIDYCYLDGRTRNR-PKVIQQFKEGTAPVFL 981

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +       WW+     Q ++R       + G +R V VY LIA+
Sbjct: 982  ISLKAGGFGLNLTE-ADYCFLLDPWWNPATETQAVDR-----THRIGQQRNVMVYRLIAR 1035

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +TI+  V+     K+ +   +++
Sbjct: 1036 DTIEAKVMALNARKAKLFASVID 1058


>gi|293397496|ref|ZP_06641747.1| SNF2 family DNA helicase [Serratia odorifera DSM 4582]
 gi|291419984|gb|EFE93262.1| SNF2 family DNA helicase [Serratia odorifera DSM 4582]
          Length = 1224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 23/208 (11%)

Query: 4    YHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y   +++     D  G +I+     ++  +  +         +      +   K+ A   
Sbjct: 1005 YEALRQQAVERLDSGGGDIKPLQVLTEITRLRRFCCHPSLVLDN---LPLAGSKLAACLD 1061

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKI 109
            II++   N    +V   F   L  L+ A  +               +    +  +  G+ 
Sbjct: 1062 IIDELRENHHKALVFSQFVDHLTLLRTALDERGIRYQYLDGSTSPTEREKRVAAFQSGEG 1121

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L      + G GLNL    + ++    WW+     Q  +R       + G +R V VY 
Sbjct: 1122 ELFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AYRIGQERPVTVYR 1175

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+ ++TI+E ++     K  + + LL  
Sbjct: 1176 LVMEDTIEEQMVALHGRKRQLAEDLLAG 1203


>gi|119964500|ref|YP_949262.1| helicase/SNF2 family domain-containing protein [Arthrobacter
            aurescens TC1]
 gi|119951359|gb|ABM10270.1| putative helicase/SNF2 family domain protein [Arthrobacter aurescens
            TC1]
          Length = 1151

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEE--KHWKEVHDEK 55
            K Y    + +R+    L  + N   F          QL+  A   D           D  
Sbjct: 931  KVYQTHLQRERQKILGLIDDVNKNRFTIFQSLTLLRQLSLDASLVDSSLSGVRSSKLDVL 990

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             + LE +I  +     ++   F   L           ++  +  G T ++    + E+  
Sbjct: 991  FEQLEDLI--SEGHRALIFSQFTGFLGKVRERLDAEGVEYCYLDGSTRNR-GDVVSEFKN 1047

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + +     WW+     Q ++R       + G  R V 
Sbjct: 1048 GAAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPASEAQAVDR-----THRIGQARNVM 1101

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A++TI+E V+     KS +   ++  
Sbjct: 1102 VYRLVAKDTIEEKVMALKAKKSQLFADVMEG 1132


>gi|167757228|ref|ZP_02429355.1| hypothetical protein CLORAM_02778 [Clostridium ramosum DSM 1402]
 gi|167703403|gb|EDS17982.1| hypothetical protein CLORAM_02778 [Clostridium ramosum DSM 1402]
          Length = 1078

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
            +  +EL   L  +N++     +   +  Q+     + YD   +       K+     +I 
Sbjct: 865  QVNKELQEQLNYDNVDRIAILAMLTRLRQICCEPRIIYDNISNI----SSKLSGCLDLIR 920

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLL 112
                N   +++   F S L  + K   +              ++    + ++      + 
Sbjct: 921  NFLGNNQKVLLFSSFTSVLDLIAKELEKESITYYQLTGDTKKEERHRLVNQFQNDDTTVF 980

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL      ++ F  WW++    Q  +R       + G +  V VY L+ 
Sbjct: 981  LISLKAGGTGLNLT-AAEAVIHFDPWWNMSAQNQATDR-----AYRIGQENVVTVYKLVM 1034

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +++++E +L+    K  + D  + 
Sbjct: 1035 KDSVEEKILELQNKKKNLADSFVE 1058


>gi|237735687|ref|ZP_04566168.1| SWF/SNF family helicase [Mollicutes bacterium D7]
 gi|229381432|gb|EEO31523.1| SWF/SNF family helicase [Coprobacillus sp. D7]
          Length = 847

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE 64
           +  +EL   L  +N++     +   +  Q+     + YD   +       K+     +I 
Sbjct: 634 QVNKELQEQLNYDNVDRIAILAMLTRLRQICCEPRIIYDNISNI----SSKLSGCLDLIR 689

Query: 65  K--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLL 112
               N   +++   F S L  + K   +              ++    + ++      + 
Sbjct: 690 NFLGNNQKVLLFSSFTSVLDLIAKELEKESITYYQLTGDTKKEERHRLVNQFQNDDTTVF 749

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL      ++ F  WW++    Q  +R       + G +  V VY L+ 
Sbjct: 750 LISLKAGGTGLNLT-AAEAVIHFDPWWNMSAQNQATDR-----AYRIGQENVVTVYKLVM 803

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           +++++E +L+    K  + D  + 
Sbjct: 804 KDSVEEKILELQNKKKNLADSFVE 827


>gi|296131142|ref|YP_003638392.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
 gi|296022957|gb|ADG76193.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
          Length = 1096

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R     L  + +              +LA  A   D ++ +  V   K+ 
Sbjct: 874  RAYDTHLQRERSRLLGLLDDFDANRLAIFRSLTTLRRLALDASLVDPDR-YASVPSSKLD 932

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            AL   +    A     +V   F   L         A L   +  GRT  +    +  +  
Sbjct: 933  ALLDQLAPVAAEGHRALVFSQFTGYLRLVADRCRTAGLAYEYLDGRTR-RRGDVVDRFRT 991

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  PL      + G GLNL    + +     WW+    QQ ++R       + G  R V 
Sbjct: 992  GSAPLFLVSLRAGGFGLNLTE-ADYVYLLDPWWNPAVEQQAVDR-----THRIGQDRKVM 1045

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  L+A  TI+E V+     K  + D +L
Sbjct: 1046 VNRLVAAGTIEEKVMALAARKRAVFDAVL 1074


>gi|329903743|ref|ZP_08273604.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548223|gb|EGF32923.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 824

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 18/184 (9%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
                 +K  Q+               +   K++ L  ++    A    ++V   F   L
Sbjct: 624 TILDALLKLRQVCCDPYLLKGPAMVPAMERAKLELLRDLLPGLVAEGRRMLVFSQFTELL 683

Query: 82  ARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           A +Q                  + +    +  + E ++P+L     + G GLNL    + 
Sbjct: 684 ALVQTELDALDLPWLALTGATPVGQRAAIVAAFQERQVPILLISLKAGGVGLNLT-AADT 742

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+    +Q   R       + G  + V VY LI + +I+E +L     K+ + 
Sbjct: 743 VIHLDPWWNPAVEEQATAR-----AHRIGQTQTVLVYKLIVEGSIEERILALQARKAALA 797

Query: 192 DLLL 195
           D ++
Sbjct: 798 DGVI 801


>gi|224541793|ref|ZP_03682332.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525290|gb|EEF94395.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1067

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIE--KANA 68
                   + +     +   K  Q+     + +D+ KH       K++A   II+  K N 
Sbjct: 859  LLKTLDGSKDRIQILAMLTKLRQICCEPRIVFDDVKH----KSSKMEACLNIIQTYKDNN 914

Query: 69   APIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPAS 118
              IIV   F S L  L K   + +T           +K    +  +      +      +
Sbjct: 915  KKIIVFSSFKSLLNLLAKELDKSKTSYYMLTGDTEKEKRKGLVDAYQNDDTTVFLISLKA 974

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL      +V F  WW++    Q  +R       + G K  VFVY LI  ++I+E
Sbjct: 975  GGTGLNLT-AAEGVVHFDPWWNMSAQNQATDR-----AYRIGQKNKVFVYKLIMADSIEE 1028

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +      K  + D  +  
Sbjct: 1029 KIQTLQAAKKDLADRFVEG 1047


>gi|324991286|gb|EGC23219.1| Snf2 family protein [Streptococcus sanguinis SK353]
          Length = 1033

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 85/218 (38%), Gaps = 30/218 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---K 55
            +    +  ++       + I        S  ++  Q+       D  K + E +D    K
Sbjct: 812  LALLKQM-QDRIIHATEDEINRSKIEILSGLMRLRQIC------DTPKLFMEDYDGESGK 864

Query: 56   IKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-E 103
            +++L  ++E+       +++   F   L  ++    +         G T  K+   +   
Sbjct: 865  LESLRELLEQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTA 924

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+         + G GLNL  G + ++   LWW+     Q I R       + G +R
Sbjct: 925  FNDGQRSAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRIGQER 978

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V VY +I + TI+E + +   +K  +   +L+  + +
Sbjct: 979  NVEVYRMITRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|293365804|ref|ZP_06612510.1| Snf2 family protein [Streptococcus oralis ATCC 35037]
 gi|307703327|ref|ZP_07640271.1| bacterial SNF2 helicase associated family protein [Streptococcus
            oralis ATCC 35037]
 gi|291315737|gb|EFE56184.1| Snf2 family protein [Streptococcus oralis ATCC 35037]
 gi|307623103|gb|EFO02096.1| bacterial SNF2 helicase associated family protein [Streptococcus
            oralis ATCC 35037]
          Length = 1031

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 25/209 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVII-- 63
            R+    +  +          S  ++  Q+    A++ D+     +    K+ +L  ++  
Sbjct: 815  RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDD----YQGASGKLDSLRDLLLQ 870

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWNEGKIPLLF 113
                   +++   F   L ++++  P          G T   D   + + +N+G+     
Sbjct: 871  VADGGHRVLIFSQFKGMLEKIEQELPVLGLTSFKITGSTPAHDRQEMTKAFNQGERDAFL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+     Q I R       + G ++ V VY LI +
Sbjct: 931  ISLKAGGVGLNLT-GADTVILVDLWWNPAVEAQAIGR-----AHRMGQEQMVEVYRLITK 984

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
             TI+E + +    K  +   +L+  +   
Sbjct: 985  GTIEEKIQELQEQKKHLVSQVLDGTESRA 1013


>gi|301336251|ref|ZP_07224453.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1163

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPNLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++N+
Sbjct: 1140 KVINS 1144


>gi|228996916|ref|ZP_04156549.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
 gi|228762795|gb|EEM11709.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
          Length = 1025

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 29/214 (13%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y     K + E    L  + +        +   +  Q+     ++ D+ +        
Sbjct: 802  KLYAAYLAKLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR----GSSA 857

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ----- 102
            K + L  I+E+  +    I++   F   L+ +     ++A P        P   +     
Sbjct: 858  KFEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPAFERVELCN 917

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +NEG+  L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K
Sbjct: 918  RFNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQK 971

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V V  L+A  TI+E + +   +K  +   ++ 
Sbjct: 972  NTVQVIKLVAHGTIEEKMNELQESKKNLIAEVIE 1005


>gi|322391674|ref|ZP_08065142.1| Snf2 family protein [Streptococcus peroris ATCC 700780]
 gi|321145485|gb|EFX40878.1| Snf2 family protein [Streptococcus peroris ATCC 700780]
          Length = 1032

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 80/193 (41%), Gaps = 23/193 (11%)

Query: 23   FNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNS 79
                +  ++  Q+    A++ ++     +    K+ +L  ++ +       +++   F  
Sbjct: 832  VEILTGLMRLRQICDTPALFMND----YQGDSGKLDSLRDLLNQIGEANHRVLIFSQFRG 887

Query: 80   DLARLQKAFP---------QGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             L R+++  P          G T  ++   + + +N+G+  +      + G GLNL  G 
Sbjct: 888  MLDRIEQELPHIGLTSFKITGSTPSQERQEMTKAFNQGERDVFLISLKAGGVGLNLT-GA 946

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++   LWW+     Q I R       + G ++AV VY L+ + TI+E + +    K  
Sbjct: 947  DTVILVDLWWNPAVESQAISR-----AHRMGQEQAVEVYRLVTRGTIEEKIQELQEQKKN 1001

Query: 190  IQDLLLNALKKET 202
            +   +L+  +   
Sbjct: 1002 LVSEVLDGTESRG 1014


>gi|226355788|ref|YP_002785528.1| DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti VCD115]
 gi|226317778|gb|ACO45774.1| putative DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti
            VCD115]
          Length = 1132

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 24/214 (11%)

Query: 7    FQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE---- 60
             +  +  +L+   +     A     +K  Q          E       + K + L+    
Sbjct: 897  MESRVREELRARGLNRSTIAILDALLKLRQAVTDPRLVKLEAARNVQGNAKFEWLQGNLP 956

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPL 111
             ++E+     +++   F + L+ L++         +   G+T D+    I  +  G+  +
Sbjct: 957  QMLEE--GRRVLIFSGFATLLSHLEQWLREEGTPYSMITGQTQDRQTQ-IDRFQNGETHV 1013

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    + ++ +  WW+     Q  +R       + G  + VFVY LI
Sbjct: 1014 FLITLKAGGVGLNLT-AADTVIHYDPWWNPAAEDQATDR-----AYRIGQDKPVFVYKLI 1067

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  +++E +L     K+++   +L+    E   +
Sbjct: 1068 AAGSVEERILDLQSRKASLARGILDGGLSEATQL 1101


>gi|237795092|ref|YP_002862644.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
 gi|229260925|gb|ACQ51958.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
          Length = 1077

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++ +  N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIREKGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I++ +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVDSSINAGHKILLFSQFTSVLKNIAEVFKINNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|255034080|ref|YP_003084701.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
 gi|254946836|gb|ACT91536.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
          Length = 1129

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 17/177 (9%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKA 87
              K  Q+ N      ++  +      KI  L   IE       I+V   F S L  ++  
Sbjct: 939  LTKLRQICNSPALLRDD-LYYGDSSAKIDVLMEQIEDTAPWHKILVFSQFTSMLDLIRPR 997

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +         G+T D+            + +      + G GLNL    + +     W
Sbjct: 998  LEERGIGYEYLTGQTRDRGARVENFQTNAHVRIFLISLKAGGTGLNLTE-ADYVYLIDPW 1056

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+     Q I+R       + G ++ V    LI   TI+E V++   TK  + + L+
Sbjct: 1057 WNPAVENQAIDR-----SHRIGQQKNVIAVRLICPGTIEEKVMELQETKKDLANDLV 1108


>gi|168184681|ref|ZP_02619345.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
 gi|182672230|gb|EDT84191.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
          Length = 1077

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++ +  N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIREKGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I++ +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVDSSINAGHKILLFSQFTSVLKNIAEVFKINNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|91214800|ref|ZP_01251773.1| DEAD/DEAH box helicase-like protein [Psychroflexus torquis ATCC
            700755]
 gi|91187227|gb|EAS73597.1| DEAD/DEAH box helicase-like protein [Psychroflexus torquis ATCC
            700755]
          Length = 1216

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 2    KQYHKFQ----RELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F+    +++   ++ E +            K  Q+ N     D+EK +      K
Sbjct: 994  KVYDQFKDYFRQQILDQIENEGVNRSQIYILQGLTKLRQICNSTALADKEKDY-GNDSAK 1052

Query: 56   IKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN 105
            +  L   + +K     ++V   F   L  +++   +         G+T  ++       N
Sbjct: 1053 LDELVRHLKQKVAKHKVLVFSQFVGMLQLVKERLDEEDIKFEYLDGQTKKREEKVNNFQN 1112

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              K+ +      + G GLNL    + +     WW+     Q I+R       + G  + V
Sbjct: 1113 NPKVRVFLISLKAGGTGLNLTE-ADYVYLIDPWWNPAVESQAIDRC-----YRIGQDKKV 1166

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              Y +I +++I+E +L     K +I   ++
Sbjct: 1167 MAYRMICKDSIEEKILSLQDKKKSIAADVI 1196


>gi|322386968|ref|ZP_08060592.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321269250|gb|EFX52186.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 1037

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            +    +  +E       E I        S  ++  Q+ +    + ++    +    K+++
Sbjct: 812  LALLKQM-QERILHATEEEINRSKIEILSGLMRLRQICDTPKLFMDD---YDGESGKLES 867

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNE 106
            L  ++E+       +++   F   L  +++   Q         G T  K+   + + +N+
Sbjct: 868  LRELLEQIQDGEHRVLIFSQFRGMLDIIEQELNQMGMESFKITGSTPAKERQEMTKAFNQ 927

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G N ++   LWW+     Q I R       + G +R V 
Sbjct: 928  GERSAFLISLKAGGVGLNLT-GANTVILVDLWWNPAVEAQAIGR-----AHRIGQERNVK 981

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   TK  +   +L+  +  
Sbjct: 982  VYRMITRGTIEEKIQELQDTKRNLVSTILDGAESR 1016


>gi|237805059|ref|YP_002889213.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273359|emb|CAX10274.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1163

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++++
Sbjct: 1140 KVIDS 1144


>gi|225857148|ref|YP_002738659.1| Snf2 family protein [Streptococcus pneumoniae P1031]
 gi|225726227|gb|ACO22079.1| Snf2 family protein [Streptococcus pneumoniae P1031]
          Length = 1032

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 78/208 (37%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE-- 64
            R+    +  +          S  ++  Q+ +    + E+    +    K+ +L  ++   
Sbjct: 816  RDHLAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMED---YQGASGKLDSLRDLLVQV 872

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFA 114
                  +++   F   L ++++             G T  K+   + + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELSDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+     Q I R       + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNL-SGADTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|76789448|ref|YP_328534.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|76167978|gb|AAX50986.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
          Length = 1163

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++++
Sbjct: 1140 KVIDS 1144


>gi|104782726|ref|YP_609224.1| Snf2/Rad54 family helicase [Pseudomonas entomophila L48]
 gi|95111713|emb|CAK16437.1| helicase, SNF2/RAD54 family [Pseudomonas entomophila L48]
          Length = 1108

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 69   APIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              +++   F S LA +         + +   G T D+    +Q++  G+  +      + 
Sbjct: 952  RKVLLFSQFTSMLALIEFELEKRGVRYSLLTGDTRDRR-APVQQFQNGESDVFLISLKAG 1010

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + ++ +  WW+     Q  +R       + G  + VFV+ LI + T++E 
Sbjct: 1011 GTGLNLT-AADTVIHYDPWWNPASENQATDR-----AYRIGQDKPVFVFKLITRGTVEEK 1064

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            +    + K+ +   LL+  + 
Sbjct: 1065 IQLLQQEKAALAAGLLDGGQA 1085


>gi|311742708|ref|ZP_07716517.1| helicase [Aeromicrobium marinum DSM 15272]
 gi|311314336|gb|EFQ84244.1| helicase [Aeromicrobium marinum DSM 15272]
          Length = 717

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 23/183 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +   +C Q+ +     +           K+  L+ +++   A     +V   +      
Sbjct: 524 LALITRCKQVCDHPALVE-----HRGASAKLDVLDDLVDTIVAEDGRALVFTQYVRMGEL 578

Query: 84  LQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           L   + +             + +    + E+  G +P+L     + G GLNL    + ++
Sbjct: 579 LVDHWTEREVSHRFLHGSLPVGQRQRMVDEFQAGDLPVLLLSLRAGGTGLNLT-AADHVI 637

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G  + V V+ L    T+++ +   +  K  + D 
Sbjct: 638 HYDRWWNPAVEDQATDR-----AHRIGQTKPVQVHRLTVGGTVEDGIADLIERKRALADA 692

Query: 194 LLN 196
           ++N
Sbjct: 693 VIN 695


>gi|237803138|ref|YP_002888332.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274372|emb|CAX11167.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 1163

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++++
Sbjct: 1140 KVIDS 1144


>gi|256419374|ref|YP_003120027.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256034282|gb|ACU57826.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 1354

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF-NS- 79
            N+ ++  K    A      D E     +   K+     I+++   N    +V   +    
Sbjct: 1157 NTLTEIGKLRMAACNTQMIDPE---IRIPSSKLAVFIEIVKELIDNNHRALVFSQYVKHL 1213

Query: 80   DLARLQ-------KAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            DL RL          +  G T +      ++E+  G   L      + G GLNL    + 
Sbjct: 1214 DLVRLALDELNVSYCYLDGSTPIPVRERVVKEFQAGAGSLFLISLKAGGTGLNLT-AADY 1272

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++    WW+    +Q  +R       + G  R V +Y L+ ++TI+E ++    +K  + 
Sbjct: 1273 VIHLDPWWNPAIEEQASDR-----AYRIGQTRPVTIYRLVTRHTIEEKIIALHNSKRDLA 1327

Query: 192  DLLLNA 197
            D LL  
Sbjct: 1328 DRLLEG 1333


>gi|328474032|gb|EGF44843.1| SNF2 family helicase [Listeria monocytogenes 220]
          Length = 1038

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 21/198 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +    K Q +L       + E     +   +  Q+      + E     +    K+  L 
Sbjct: 847  LAYLEKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 903

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
              I+ A  N   I++   F   L  +++   +         G+T  K     +  +NEG+
Sbjct: 904  DTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 963

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ + LWW+    +Q   R       + G KR V V+
Sbjct: 964  NDIFLISLKAGGTGLNL-VGADTVILYDLWWNPAVEEQATGR-----AHRIGQKRVVQVF 1017

Query: 169  YLIAQNTIDELVLQRLRT 186
             +I + TI+E +    + 
Sbjct: 1018 RMITKGTIEERIFDLQKK 1035


>gi|284032554|ref|YP_003382485.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283811847|gb|ADB33686.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 979

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 82/213 (38%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    RE    ++  + IE      S   +  Q+ N    +  E         K+ AL+
Sbjct: 736 LYQAVARETLAKIEQAQGIERRGLVLSLLTQLKQVCNHPAQFLHEPGPLPRRSGKLAALD 795

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEG 107
            +++   A    +++   +  ++ RL +A    R +            +    ++++  G
Sbjct: 796 ELLDVILAEGESVLIFSQYV-EMGRLIEAHLAARQIGALFLHGGVGVRRRQQMVEQFQAG 854

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GL L    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 855 ESQVFLLSLKAGGVGLTLTKATH-VVHYDRWWNPAVEDQATDR-----AYRIGQDRPVQV 908

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + L+ ++T+++ +   +  K  + D ++ + + 
Sbjct: 909 HRLVTEHTLEDRIATVIAAKRELADAVIGSGEA 941


>gi|224826766|ref|ZP_03699866.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
 gi|224600986|gb|EEG07169.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
          Length = 1370

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 77/212 (36%), Gaps = 24/212 (11%)

Query: 1    MKQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y   +++    L     ++ +     ++  +  +          +    E+   K+K
Sbjct: 1149 LHLYEALRQQAVDKLDALGEQDNKPLKVLAEITRLRRFCCHPRLALPD---SELAGSKLK 1205

Query: 58   ALEVIIEKA--NAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCT-IQEWN 105
            A   I ++   N    +V   F           D   +   +  G T  ++    +  + 
Sbjct: 1206 AFAEIADELLENRHKALVFSQFVDHLAIVRAWLDERGIAYQYLDGSTPARERKARVDAFQ 1265

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  L      + G GLNL    + ++    WW+     Q  +R       + G +R V
Sbjct: 1266 AGQGDLFLISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRMGQQRPV 1319

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+A++TI+E ++     K  + D LL  
Sbjct: 1320 TVYRLVAEHTIEEQIVALHAAKRDLADSLLEG 1351


>gi|104781117|ref|YP_607615.1| SNF2 family DNA helicase [Pseudomonas entomophila L48]
 gi|95110104|emb|CAK14811.1| putative DNA helicases, SNF2 family [Pseudomonas entomophila L48]
          Length = 946

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 3   QYHKFQRELYC---DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +++      DL      +F   ++  +  +                +   K +A+
Sbjct: 725 LYEALRQQAVSNVSDLAPGAGRSFQILTEITRLRRFCCHPALVTPGST---LPGSKFQAV 781

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG 107
             I+E+   N    ++   +   L+ ++          +         +    +  +  G
Sbjct: 782 TAIVEELLDNGHKALIFSQYVDHLSIVRTWFDEKGIAYQYLDGSVPAKERESRVNAFQAG 841

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 842 AGEVFLISLKAGGSGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AYRIGQQRPVTI 895

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+A+NTI+E ++     K  + D LL  
Sbjct: 896 YRLVAENTIEEQIVALHARKRDLADSLLEG 925


>gi|261420703|ref|YP_003254385.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|319768373|ref|YP_004133874.1| SNF2-related protein [Geobacillus sp. Y412MC52]
 gi|261377160|gb|ACX79903.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|317113239|gb|ADU95731.1| SNF2-related protein [Geobacillus sp. Y412MC52]
          Length = 924

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 33/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +   +       E  +  +  ++    LQ+ NG        A+Y  E +  + V  
Sbjct: 692 ALYEQLVNDTL-----ERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVER 746

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  +IE+   N    ++   +      +Q+               G        
Sbjct: 747 SHKLEKLIELIEQIRTNDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLHGGVPKQTRDR 806

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+   K P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 807 MVDEFQAKKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 860

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V V+ LI   TI+E + + L  K  + DL+   
Sbjct: 861 GQTKFVHVHKLITIGTIEEKIDEMLEQKQALADLITEG 898


>gi|294056264|ref|YP_003549922.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615597|gb|ADE55752.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 1024

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 22/206 (10%)

Query: 5    HKFQRELY-CDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             K +RE++  ++ G N      A+  + ++  Q        DE   +      K+ A + 
Sbjct: 805  EKTRREIFNLEMGGANAGRLQFAAFKELLRLRQACVDPRILDE--TFAASESAKLAAFDE 862

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIP 110
            ++++   N + ++V   F S L  L +             G+T ++     +   +  IP
Sbjct: 863  VLDECLDNGSRMLVFSSFVSALQLLAQHLKAKGHRFNYLDGQTKNRLALCDEFNEDASIP 922

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G + +V +  WW+     Q  +R       + G ++ V    L
Sbjct: 923  VFLISLKAGGTGLNLT-GADTVVHYDPWWNPAAEAQATDR-----AHRIGQEKVVTSIKL 976

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            IA NT++E VL+    K+ +   L  
Sbjct: 977  IAANTVEEKVLELQAKKAELLAELFE 1002


>gi|113866590|ref|YP_725079.1| SNF2 family DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113525366|emb|CAJ91711.1| Superfamily II DNA/RNA helicase, SNF2 family [Ralstonia eutropha
           H16]
          Length = 1023

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 18/186 (9%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           +  ++ ++  + A        E   +     K++A   +  +  A+    +V   F   L
Sbjct: 820 HVLAQLMRLRRAACDPRLVTPELSGQLSEGAKVRAFVELASELAASGHKTLVFSQFVDFL 879

Query: 82  ARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             L++   +               +    +  +  G+  +      + G GLNL    + 
Sbjct: 880 QLLRQGLERAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNLT-AADY 938

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+     Q + R       + G +R V VY LI   TI+E ++   R K  + 
Sbjct: 939 VIIADPWWNPAAEDQAMGR-----AHRIGQQRPVTVYRLINAGTIEERIVDLHRDKRALA 993

Query: 192 DLLLNA 197
           D LL A
Sbjct: 994 DGLLEA 999


>gi|126348422|emb|CAJ90145.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
          Length = 976

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  E++        K++ L
Sbjct: 749 LYEAVVREALAEIAGADSMARRGMIVKLLTSLKQICNHPAQFLKEDRPRITGRSGKLELL 808

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------DPCTIQEWNE 106
           + +++   A  + ++V   +    ARL +     R +                 ++ + +
Sbjct: 809 DELLDTILAEESSVLVFTQYVQM-ARLLERHLTARGVSSLFLHGGTSVTARESLVRRFQD 867

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V F  WW+     Q  +R       + G  R V 
Sbjct: 868 GEVPVFLLSLKAAGTGLNLTRAEH-VVHFDRWWNPAVEAQATDR-----AYRIGQTRPVQ 921

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ L+A+ T+++ +   L  K  + D +L A + 
Sbjct: 922 VHRLVAEGTVEDRIAALLHRKRKLADAVLGAGEA 955


>gi|319949229|ref|ZP_08023314.1| SNF2-related protein [Dietzia cinnamea P4]
 gi|319437114|gb|EFV92149.1| SNF2-related protein [Dietzia cinnamea P4]
          Length = 818

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 2   KQYH-KFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--KHWKEVHDEK 55
           + Y  +  R+   L   L        +  +      +L   A   D +         DE 
Sbjct: 599 RIYERELARQRASLLALLDDFESNRISILAGLTVLRRLCLDASLVDPDHLGVASAKTDEL 658

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT----IQEWNEG 107
           I AL  ++  A     +V   F + L     RL+        LD         + E+ EG
Sbjct: 659 IAALREVV--AEGHRALVFSQFTTYLDTVVARLRDEGITVAHLDGSTTDRAGAVGEFTEG 716

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G + +     WW+     Q ++R       + G  R V V
Sbjct: 717 GAQVFCLSLKAGGVGLNL-VGADYVFLLDPWWNPATEAQAVDR-----AHRIGQTRPVLV 770

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y ++A++TI+E V++  + K+ +   +L++
Sbjct: 771 YRMVARDTIEERVVELQQRKAELFASVLDS 800


>gi|260221226|emb|CBA29577.1| hypothetical protein Csp_A12850 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 784

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
           +     +K  Q+              ++   K+ AL  ++         ++V   F   L
Sbjct: 558 SILDALLKLRQVCCDPYLVKGSDIAPDMERAKLHALTDLLVPLVDEGRRVLVFSQFTELL 617

Query: 82  ARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             +  A    R             +    +Q +   ++P+L     + G GLNL    + 
Sbjct: 618 ELIADALSALRLPFLSLTGNTCPAQRGDIVQRFQNQEVPVLLVSLKTGGVGLNLT-AADT 676

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+    +Q   R       + G  + VFVY L+ + +I+E +L+    K  + 
Sbjct: 677 VIHMDPWWNPAVEEQATAR-----AHRIGQDQPVFVYKLVVEGSIEERMLELQARKLALS 731

Query: 192 DLLL 195
           D +L
Sbjct: 732 DSVL 735


>gi|15605441|ref|NP_220227.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|255311538|ref|ZP_05354108.1| SWF/SNF family helicase [Chlamydia trachomatis 6276]
 gi|255317839|ref|ZP_05359085.1| SWF/SNF family helicase [Chlamydia trachomatis 6276s]
 gi|255349101|ref|ZP_05381108.1| SWF/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503638|ref|ZP_05382028.1| SWF/SNF family helicase [Chlamydia trachomatis 70s]
 gi|255507317|ref|ZP_05382956.1| SWF/SNF family helicase [Chlamydia trachomatis D(s)2923]
 gi|3329163|gb|AAC68303.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525752|emb|CBJ15233.1| putative helicase [Chlamydia trachomatis Sweden2]
 gi|296435325|gb|ADH17503.1| SWF/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296436253|gb|ADH18427.1| SWF/SNF family helicase [Chlamydia trachomatis G/9768]
 gi|296437182|gb|ADH19352.1| SWF/SNF family helicase [Chlamydia trachomatis G/11222]
 gi|296438113|gb|ADH20274.1| SWF/SNF family helicase [Chlamydia trachomatis G/11074]
 gi|296439042|gb|ADH21195.1| SWF/SNF family helicase [Chlamydia trachomatis E/11023]
 gi|297140614|gb|ADH97372.1| SWF/SNF family helicase [Chlamydia trachomatis G/9301]
 gi|297748839|gb|ADI51385.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749719|gb|ADI52397.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1163

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++N+
Sbjct: 1140 KVINS 1144


>gi|229004592|ref|ZP_04162330.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
 gi|228756633|gb|EEM05940.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
          Length = 887

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 6   KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVI 62
           K + E    L  + +        +   +  Q+     ++ D+ +        K + L  I
Sbjct: 672 KLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR----GSSAKFEQLLEI 727

Query: 63  IEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIP 110
           +E+  +    I++   F   L+ +     ++A P        P   +      +NEG+  
Sbjct: 728 VEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPAFERVELCNRFNEGEGD 787

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K  V V  L
Sbjct: 788 LFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQKNTVQVIKL 841

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  TI+E + +   +K  +   ++ 
Sbjct: 842 VAHGTIEEKMNELQESKKNLIAEVIE 867


>gi|187779662|ref|ZP_02996135.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
 gi|187773287|gb|EDU37089.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
          Length = 1077

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    + E Y ++  +G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKEEFYKEIKERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
            I+ L  I+         I++   F S L  + + F           G T  +     +++
Sbjct: 908  IETLLDIVNSNINEGHKILLFSQFTSVLKNISEVFKANNINYLYLDGSTKANVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|166154925|ref|YP_001653180.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930913|emb|CAP06475.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 1163

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++N+
Sbjct: 1140 KVINS 1144


>gi|166154050|ref|YP_001654168.1| putative helicase [Chlamydia trachomatis 434/Bu]
 gi|301335252|ref|ZP_07223496.1| putative helicase [Chlamydia trachomatis L2tet1]
 gi|165930038|emb|CAP03521.1| putative helicase [Chlamydia trachomatis 434/Bu]
          Length = 1163

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++N+
Sbjct: 1140 KVINS 1144


>gi|302340105|ref|YP_003805311.1| SNF2-related protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637290|gb|ADK82717.1| SNF2-related protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1046

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 26/212 (12%)

Query: 2    KQYHKFQRELYCDLQG------ENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y + +  +  +++        +++  N+     ++  Q A   +  DE+       D 
Sbjct: 825  RFYTRLKESMRAEVKSLIDAKPGSLKVANAILMALLRLRQAAISPILLDEKPETSSKLDV 884

Query: 55   KIKALEVIIEKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDK-DPCTIQEW 104
             I+ LE ++  A    +++   F           +   ++ A+  G    +     I+ +
Sbjct: 885  VIQLLETLL--AEGHKVLIFSQFVKVLSLLRARLEAKEMEYAYLDGSLGTRAREQAIRSF 942

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL     + +    WW+     Q I+R       + G +R 
Sbjct: 943  KNAK-GIFLISLKAGGTGLNLTEADYVFIL-DPWWNPAVESQAIDR-----SHRIGQRRP 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y  IA  T++E +++    K  I + LL+
Sbjct: 996  VIAYKFIATGTVEERIIELQEQKRRIANELLS 1027


>gi|149280534|ref|ZP_01886651.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter
           sp. BAL39]
 gi|149228716|gb|EDM34118.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter
           sp. BAL39]
          Length = 964

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 70/177 (39%), Gaps = 18/177 (10%)

Query: 29  TVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NS------- 79
                QLAN  +  DE  +      +  I  L+ +++      +++   F          
Sbjct: 776 LTALRQLANHPLMIDESYESDSGKFENVIHTLDNVLK--GGHKVLIFSQFVKHLSIFRNY 833

Query: 80  -DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +  ++  ++  G T ++     +      + +      + G GLNL     + +    W
Sbjct: 834 FEKEQIPFSYLDGSTKNRGEIVAEFQENKDLKVFLISIKAGGVGLNLTQADYVFIL-DPW 892

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           W+    QQ I+R       + G  + VF+Y  IA++T++E +L     K T+ + L+
Sbjct: 893 WNPAVEQQAIDR-----SHRIGQDKKVFIYKFIAKDTVEEKILALQNRKKTLANALI 944


>gi|196250406|ref|ZP_03149098.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
 gi|196210065|gb|EDY04832.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
          Length = 926

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 33/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +   +       E  +A +  ++    LQ+ NG        A+Y  E    + V  
Sbjct: 694 ALYEQLVNDTL-----ERAKAASPFARRGLILQMLNGIKQICNHPALYLKERSPRQLVER 748

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  ++E+  AN    ++   +      +Q+                        
Sbjct: 749 SHKLEKLVELVEQIRANDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLNGSVPKPTRDR 808

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+   K P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 809 MVDEFQARKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 862

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V V+ LI   TI+E + + L  K  + D++   
Sbjct: 863 GQTKFVHVHKLITTGTIEEKIDEMLEQKQALADVITEG 900


>gi|322805986|emb|CBZ03553.1| swf/SNF family helicase [Clostridium botulinum H04402 065]
          Length = 1077

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNIKYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|170760693|ref|YP_001787071.1| Snf2/Rad54 family helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407682|gb|ACA56093.1| helicase, SNF2/RAD54 family [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1077

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGNLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V +  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEIIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|319946443|ref|ZP_08020680.1| Snf2 family protein [Streptococcus australis ATCC 700641]
 gi|319747411|gb|EFV99667.1| Snf2 family protein [Streptococcus australis ATCC 700641]
          Length = 1031

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 24/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  +  ++       E +        S  ++  Q+ +    + E+         K+ +
Sbjct: 810  LAQLKQM-QDRILSSSEEELNRSKIEILSGLMRLRQICDTPSLFLEDYT---GESGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNE 106
            L  ++E+       +++   F   L  ++K     R            ++       +N 
Sbjct: 866  LRELLEQIKDGNQRVLIFSQFRGMLDIIEKELDALRMTSFKITGSTPANERQDMTNAFNS 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + ++   LWW+     Q I R       + G  + V 
Sbjct: 926  GQGDAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVEDQAIGR-----AHRMGQDKNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY +I + TI+E + +   +K  +   +L+  +  
Sbjct: 980  VYRMITRGTIEEKIQELQTSKRHLVSTILDGTETR 1014


>gi|15618758|ref|NP_225044.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|16752190|ref|NP_445557.1| SNF2 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242209|ref|NP_877150.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
 gi|4377165|gb|AAD18987.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|8163540|gb|AAF73724.1| helicase, Snf2 family [Chlamydophila pneumoniae AR39]
 gi|33236720|gb|AAP98807.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
          Length = 1166

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 970  HVLATLTRLKQICCHPAIF-AKDAPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1028

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1029 GIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGGTGLNL-VGADTV 1087

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1088 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1142

Query: 193  LLLNA 197
             ++N+
Sbjct: 1143 KVINS 1147


>gi|320547398|ref|ZP_08041686.1| Snf2 family protein [Streptococcus equinus ATCC 9812]
 gi|320447943|gb|EFW88698.1| Snf2 family protein [Streptococcus equinus ATCC 9812]
          Length = 1030

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
            + Q  +  +E        +I        S   +  Q+    A++ D +         KI 
Sbjct: 811  LAQLRQM-QETITSASDADINRRKIEILSGITRLRQICDTPALFMDYDGE-----SGKID 864

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            +L  ++ +   N    ++   F   L   +K                  D      + +N
Sbjct: 865  SLRDLLTQIKENGHRALIFSQFRGMLDIAEKEIEDLGLTSYKITGSTPADARQEMTRAFN 924

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G          + G GLNL  G + ++   LWW+     Q I R       + G K  V
Sbjct: 925  NGSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKENV 978

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 979  EVYRLITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|15836382|ref|NP_300906.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
 gi|8979223|dbj|BAA99057.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
          Length = 1166

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 970  HVLATLTRLKQICCHPAIF-AKDAPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1028

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1029 GIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGGTGLNL-VGADTV 1087

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1088 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1142

Query: 193  LLLNA 197
             ++N+
Sbjct: 1143 KVINS 1147


>gi|219668528|ref|YP_002458963.1| non-specific serine/threonine protein kinase [Desulfitobacterium
            hafniense DCB-2]
 gi|219538788|gb|ACL20527.1| Non-specific serine/threonine protein kinase [Desulfitobacterium
            hafniense DCB-2]
          Length = 1082

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  Q+ +    + +          K+   + ++E   A    ++V   F S L  
Sbjct: 888  LAALTRLRQICSHPGMFIDNYT---GESGKMLLFQELLEDSLAGGHRVLVFSQFTSMLDI 944

Query: 84   L---------QKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G T   +       +N G+  +      + G GLNL  G + ++
Sbjct: 945  IGEYLHSENIDYFYLSGSTKALERSRMAASFNNGEGQVFLISLKAGGTGLNLT-GADTVI 1003

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+     Q  +R       + G + +V V  L+ Q TI+E V      K  + D 
Sbjct: 1004 HFDPWWNPAVEDQATDR-----AHRIGQQNSVQVIKLLTQGTIEEKVNALQAKKKKLIDS 1058

Query: 194  LLN 196
            ++ 
Sbjct: 1059 VIQ 1061


>gi|148379627|ref|YP_001254168.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 3502]
 gi|153931482|ref|YP_001384006.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153936716|ref|YP_001387549.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. Hall]
 gi|226948994|ref|YP_002804085.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
 gi|148289111|emb|CAL83205.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927526|gb|ABS33026.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 19397]
 gi|152932630|gb|ABS38129.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. Hall]
 gi|226841046|gb|ACO83712.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1077

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|138896831|ref|YP_001127284.1| helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134268344|gb|ABO68539.1| Helicase, putative [Geobacillus thermodenitrificans NG80-2]
          Length = 926

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 33/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +   +       E  +A +  ++    LQ+ NG        A+Y  E    + V  
Sbjct: 694 ALYEQLVNDTL-----ERAKAASPFARRGLILQMLNGIKQICNHPALYLKERSPRQLVER 748

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  ++E+  AN    ++   +      +Q+                        
Sbjct: 749 SHKLEKLVELVEQIRANDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLNGSVPKPTRDR 808

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+   K P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 809 MVDEFQARKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 862

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V V+ LI   TI+E + + L  K  + D++   
Sbjct: 863 GQTKFVHVHKLITTGTIEEKIDEMLEQKQALADVITEG 900


>gi|300771567|ref|ZP_07081442.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761556|gb|EFK58377.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 960

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 4   YHKFQ---RELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y K +   R    ++  E+    +  +      K  QLAN     D++    E +  K  
Sbjct: 741 YEKVKSEYRNALLNVNTEDKAKTSQITLLQGLTKLRQLANHPKMIDDD---FEGNSGKFD 797

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
            +   +E        +++   F   L+          +Q A+  G T ++     +    
Sbjct: 798 LVLETLESVLHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGATKNRSEAVAEFQKN 857

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               L      + G GLNL     + +    WW+    QQ ++R       + G  R+VF
Sbjct: 858 KNTKLFLISIKAGGVGLNLIEADYVFIL-DPWWNPAVEQQAVDR-----SHRIGQTRSVF 911

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +Y  I ++T++E +L     K  I   L+
Sbjct: 912 IYKFITKDTVEEKILAMQNRKRGIAKSLI 940


>gi|227535766|ref|ZP_03965815.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244254|gb|EEI94269.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 960

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 4   YHKFQ---RELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y K +   R    ++  E+    +  +      K  QLAN     D++    E +  K  
Sbjct: 741 YEKVKSEYRNALLNVNTEDKAKTSQITLLQGLTKLRQLANHPKMIDDD---FEGNSGKFD 797

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
            +   +E        +++   F   L+          +Q A+  G T ++     +    
Sbjct: 798 LVLETLESVLHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGATKNRSEAVAEFQKN 857

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               L      + G GLNL     + +    WW+    QQ ++R       + G  R+VF
Sbjct: 858 KNTKLFLISIKAGGVGLNLIEADYVFIL-DPWWNPAVEQQAVDR-----SHRIGQTRSVF 911

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +Y  I ++T++E +L     K  I   L+
Sbjct: 912 IYKFITKDTVEEKILAMQNRKRGIAKSLI 940


>gi|171780271|ref|ZP_02921175.1| hypothetical protein STRINF_02059 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281619|gb|EDT47054.1| hypothetical protein STRINF_02059 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1027

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  +  +E        +I        S   +  Q+ +    + +     +    K+ +
Sbjct: 808  LAQLRQM-QETIAGASDADINRRKIEILSGITRLRQICDTPALFMD----YQGESGKLDS 862

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
            L  ++ +   N    ++   F   L   +K   +              +      + +N 
Sbjct: 863  LRDLLTQIKENGHRALIFSQFRGMLDIAEKEIEEIGLTSYKITGSTPANARQEMTRAFNN 922

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G K  V 
Sbjct: 923  GSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKENVE 976

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 977  VYRLITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|330443927|ref|YP_004376913.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
 gi|328807037|gb|AEB41210.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
          Length = 1167

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 70/183 (38%), Gaps = 18/183 (9%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      +  +   +     K   L  ++     +    +V   +   L+ 
Sbjct: 973  LATLTRLKQICCHPAIF-AKDSPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKMLSI 1031

Query: 84   LQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            ++K          +  G T ++     +   +  + +      + G GLNL  G + ++ 
Sbjct: 1032 MKKDLEIRGVPFVYLDGSTKNRLELVNKFNEDPNLLVFLVSLKAGGTGLNL-VGADTVIH 1090

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++   +
Sbjct: 1091 YDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKV 1145

Query: 195  LNA 197
            +N+
Sbjct: 1146 INS 1148


>gi|282891309|ref|ZP_06299811.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498806|gb|EFB41123.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1166

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 23/202 (11%)

Query: 2    KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y +  RE    L   +G +    +  +   +  Q+      + +EK  +     K   
Sbjct: 945  RSYAQSAREELSQLVSKEGFDKVQIHVLATLTRLKQICCHPAIFAKEK-PEGGDSSKYDM 1003

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEG 107
            L  +I          ++   +   L  ++           +  G + ++    ++++NE 
Sbjct: 1004 LMELIPTLIEGKHKTVIFSQYTRMLNIIRDDLSSQGIPFEYLDGSSKNR-LNIVKKFNED 1062

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            + IP+      + G GLNL  G + ++ + +WW+     Q  +R+      + G K++V 
Sbjct: 1063 ENIPIFLVSLKAGGTGLNL-IGADTVIHYDMWWNPAVENQATDRV-----HRLGQKKSVL 1116

Query: 167  VYYLIAQNTIDELVLQRLRTKS 188
             Y LI   TI+E +LQ  + K 
Sbjct: 1117 SYKLITLGTIEEKILQLQQQKE 1138


>gi|170755378|ref|YP_001781299.1| Snf2/Rad54 family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120590|gb|ACA44426.1| helicase, SNF2/RAD54 family [Clostridium botulinum B1 str. Okra]
          Length = 1077

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|330829013|ref|YP_004391965.1| SWI/SNF family helicase [Aeromonas veronii B565]
 gi|328804149|gb|AEB49348.1| SWI/SNF family helicase [Aeromonas veronii B565]
          Length = 1291

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E  W +    K+    
Sbjct: 1074 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPELVMPE--WSQTSS-KLDEAM 1130

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             ++E+A      ++V   F   L+ L+    Q          G +      +I  +   +
Sbjct: 1131 ALLEEAIDGGHRVLVFSQFVDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFRHEE 1190

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+     Q  +R       + G  + V VY
Sbjct: 1191 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPAVEDQASDR-----AHRMGQTQPVTVY 1244

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1245 RLVCEQTVEEKIVALHDEKRALADGLLSG 1273


>gi|297583264|ref|YP_003699044.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141721|gb|ADH98478.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 1102

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  QL      + E+    +    K+  L+ ++  A  N   +++   F+S L  
Sbjct: 909  LAGLTRLRQLCCHPSLFIED---YKGESGKLNDLKELVANAVENGRRLLIFSQFSSMLTM 965

Query: 84   LQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            ++    +         G+T  KD   + + +N+G+  L      + G GLNL  G +++V
Sbjct: 966  MKDVLEEEGYSLFYLDGQTPGKDRVDMAERFNQGEKELFLISLKAGGTGLNL-PGADLVV 1024

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q   R       + G K+ V V  ++++ TI+E +    + K  + D 
Sbjct: 1025 LYDLWWNPAVEEQAAGR-----AHRMGQKKVVQVIRMVSEGTIEEKIHALQQRKRELIDT 1079

Query: 194  LLN 196
            ++ 
Sbjct: 1080 VIQ 1082


>gi|15834706|ref|NP_296465.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163131|gb|AAF73530.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1181

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 985  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLGSLVDSGHKTVVFSQYTKML 1043

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1044 GIIKQDLEAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGGTGLNL-VGADTV 1102

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1103 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1157

Query: 193  LLLNA 197
             ++N+
Sbjct: 1158 KVINS 1162


>gi|153939497|ref|YP_001391002.1| Snf2/Rad54 family helicase [Clostridium botulinum F str. Langeland]
 gi|152935393|gb|ABS40891.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. Langeland]
          Length = 1077

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|319650819|ref|ZP_08004956.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
 gi|317397417|gb|EFV78118.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
          Length = 939

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVH-DEKIKA 58
            Y +  ++ +  ++                +  QL N  A+Y  EEK    +    K++ 
Sbjct: 715 LYEQLVQDTFAQIEKLSGFERKGLILQLLSRLKQLCNHPALYLKEEKPKHVLERSVKLEK 774

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  ++   +      ++   +      + +   +                +    I  + 
Sbjct: 775 LSELVSAVHEQGESCLIFTQYIEMGNMIARLLKKQFGFDVPFLNGSVPKQERDNMISRFQ 834

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + + P+      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 835 DHEFPVFLLSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 888

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +IA  T++E +   L  K ++ D ++ +
Sbjct: 889 HVHKMIATGTLEEKIDAMLEKKQSLNDQIITS 920


>gi|310822580|ref|YP_003954938.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309395652|gb|ADO73111.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1282

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFA 114
            K+    ++V   F S L  +++   +G            L      IQ + EGK  +   
Sbjct: 1108 KSEGHRVLVFSQFTSHLELVREEVERGGFTYQYLDGSTPLGARAKRIQAFQEGKGDVFLI 1167

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++    WW+     Q  +R       + G  R V VY LIA+ 
Sbjct: 1168 SLKAGGTGINLT-AADYVIHLDPWWNPAVEDQATDR-----AHRIGQTRPVTVYRLIARG 1221

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K  +   +L  
Sbjct: 1222 TIEEQILSLHSDKRALVAGVLEG 1244


>gi|300855333|ref|YP_003780317.1| putative SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
 gi|300435448|gb|ADK15215.1| predicted SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1080

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S   K  QL                 + K+ AL  ++ K  A    I+V   F S L  
Sbjct: 883  LSYITKLRQLCLDPSILINN---YSGGNGKMDALVELLHKSIAQGHRILVFSQFTSVLKN 939

Query: 84   LQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + +     +           L++    ++++N+GK  +      + G GLNL    ++++
Sbjct: 940  IGEKISGEKIPFSYLDGTIKLEERINIVKKFNKGKNSVFLISLKAGGTGLNLT-SADVVI 998

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+    +Q  +R       + G K  V V  +IA+ TI+E ++     K  + + 
Sbjct: 999  HFDPWWNTAVEEQAADR-----THRIGQKNVVEVIKIIAKGTIEEKIVLLQNEKKKLIEK 1053

Query: 194  LLN 196
            L+ 
Sbjct: 1054 LME 1056


>gi|221124460|ref|XP_002165434.1| PREDICTED: similar to TATA-binding protein-associated factor 172
           [Hydra magnipapillata]
          Length = 562

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
           +     +K  Q+              ++   K+ AL  ++         ++V   F   L
Sbjct: 336 SILDALLKLRQVCCDPYLVKGSDIAPDMERAKLHALTDLLVPLVDEGRRVLVFSQFTELL 395

Query: 82  ARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             +  A    R             +    +Q +   ++P+L     + G GLNL    + 
Sbjct: 396 ELIADALSALRLPFLSLTGNTCPAQRGDIVQRFQNQEVPVLLVSLKTGGVGLNLT-AADT 454

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+    +Q   R       + G  + VFVY L+ + +I+E +L+    K  + 
Sbjct: 455 VIHMDPWWNPAVEEQATAR-----AHRIGQDQPVFVYKLVVEGSIEERMLELQARKLALS 509

Query: 192 DLLL 195
           D +L
Sbjct: 510 DSVL 513


>gi|309791592|ref|ZP_07686086.1| non-specific serine/threonine protein kinase [Oscillochloris
            trichoides DG6]
 gi|308226372|gb|EFO80106.1| non-specific serine/threonine protein kinase [Oscillochloris
            trichoides DG6]
          Length = 1064

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 20/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
             ++  Q+ N     DE+         K + L   +E  +A     ++   F   L  +++
Sbjct: 876  LLRLRQICNHPRLMDEK---FRGTSGKFELLLETLETLQAEGHKALIFSQFVQMLTIIRE 932

Query: 87   AFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            A            G T  +        N+  +P       + G GLNL    + ++    
Sbjct: 933  ALDARKIPYAYLDGSTRKRQEVVDTFQNDPDLPFFLISLKAGGVGLNLT-AADYVIHVDP 991

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            WW+     Q  +R       + G  R VFVY LI + T++E +L     K  + + L+
Sbjct: 992  WWNPAIEMQATDR-----THRIGQTRPVFVYKLITRETVEEKILLLQEQKRALVEQLI 1044


>gi|146297575|ref|YP_001181346.1| helicase domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411151|gb|ABP68155.1| helicase domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 177

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP 98
           E    K++  E I+E    +   ++V   +   L  L++   +         G T  ++ 
Sbjct: 5   EGSSGKLELFEEILEDVLESNHRVVVFSQWVEMLKILEERIKERGFEYFYLNGSTKSEER 64

Query: 99  CT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +N G+  +      + G GLNL  G ++++ + LWW+     Q ++R       
Sbjct: 65  IDMVNRFNGGEKQVFLVSLKAGGFGLNLT-GADVVILYDLWWNPAVENQAMDR-----AH 118

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G + +V V+ LI +NTI+E + +  + K  + D ++++ +
Sbjct: 119 RIGQENSVQVFRLITKNTIEERIFELQQKKKDLFDQVVSSAQ 160


>gi|218282742|ref|ZP_03488939.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
 gi|218216387|gb|EEC89925.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
          Length = 1054

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYH 76
             +++    +   +  Q+        E     +    K      +IE  K N   +++   
Sbjct: 853  KVDSILILAMMTRLRQICCEPRMLYEN---YKGESTKFSMCLDLIETLKENGKKVLLFSS 909

Query: 77   FNS---------DLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            F S         D   ++     G     K    +  +      +      + G GLNL 
Sbjct: 910  FTSIFDDFIEEFDRRGIKYHMITGAVDKKKRKEEVDAFQNDDSNVFLISLKAGGTGLNLT 969

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 ++ F  WW++    Q  +R       + G  + V VY L+ +NTI+E + +  + 
Sbjct: 970  K-AQAVIHFDPWWNVSAQNQATDR-----AYRIGQTKNVLVYQLLMKNTIEEKIYEMQKR 1023

Query: 187  KSTIQDLLLN 196
            K  + DL + 
Sbjct: 1024 KKEMSDLFVE 1033


>gi|254443940|ref|ZP_05057416.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
 gi|198258248|gb|EDY82556.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
          Length = 1069

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 6    KFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            K  ++    +  ++  A   FN  +  ++  Q+         E  + +V   K++ L  +
Sbjct: 854  KLTQQKVLGIDSQSAFAKERFNILASLLRLRQICCHPALISPE--YAKVRSAKLEGLVDL 911

Query: 63   IEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPL 111
            + +       +++   F   L  + ++            G+T +++    Q  N+  +  
Sbjct: 912  VSELQEEGHKVLIFSQFVEMLKIISESLKGIDCKHLTLTGQTKNREELVDQFQNDETVTA 971

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    + +V +  WW+     Q I+R       + G K  V  Y LI
Sbjct: 972  FLLSLRAAGSGLNLT-AASYVVLYDPWWNPAVEAQAIDR-----THRIGQKNTVNAYRLI 1025

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
            A++++++ +      K ++ + ++
Sbjct: 1026 AKDSVEQKIQSLQVKKESLANEIV 1049


>gi|15806278|ref|NP_294983.1| SNF2/RAD54 family DNA helicase [Deinococcus radiodurans R1]
 gi|6459005|gb|AAF10831.1|AE001973_4 DNA helicase, SNF2/RAD54 family [Deinococcus radiodurans R1]
          Length = 600

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +K  Q          E   +   + K+  LE  + +       +++   F + L  L++
Sbjct: 397 LLKLRQAVTDPRLVKLEAAREVQGNAKLDWLETNLPQMVEEGRRVLIFSGFATLLGHLEE 456

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              +         G+T D+    I  +  G+  +      + G GLNL    + ++ +  
Sbjct: 457 FLKREGIPYSKITGQTKDRQKQ-IDAFQAGETHVFLITLKAGGVGLNLT-AADTVIHYDP 514

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WW+     Q  +R       + G  + VFVY LIA  +++E +L     K+ +   +L+ 
Sbjct: 515 WWNPAAEDQATDR-----AYRIGQDKPVFVYKLIAAGSVEERILDLQARKAALARGVLDG 569


>gi|171912733|ref|ZP_02928203.1| hypothetical protein VspiD_16175 [Verrucomicrobium spinosum DSM
           4136]
          Length = 803

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 17/181 (9%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-- 82
           +  ++  Q+ N         H+K     K   LE ++++        ++   F   L   
Sbjct: 608 TVLLRLRQVCNDLRLLKLGDHFKGQPGGKWPMLEELLQEIIDGGGKALIFSQFVGMLRLV 667

Query: 83  -------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                   +  ++  G T D+        ++ +  L      + G+GLNL    + ++  
Sbjct: 668 RDKVQSLEIAHSYLDGGTQDRGGQVSAFQSDPERKLFLISLKAGGYGLNLT-AADHVLLV 726

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             WW+     Q I+R       + G  R V  Y L  + T++E +L+    K +I D+ L
Sbjct: 727 DPWWNPAVEAQAIDR-----AHRIGQGRPVTAYRLATRGTVEEKILKLQEKKRSIMDMTL 781

Query: 196 N 196
            
Sbjct: 782 E 782


>gi|327439414|dbj|BAK15779.1| superfamily II DNA/RNA helicase, SNF2 family [Solibacillus silvestris
            StLB046]
          Length = 1061

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 21/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR 83
             +   +  Q+      + E     +    K + L  ++E++      +++   F   L  
Sbjct: 868  LAGITRLRQICCHPALFVEG---YKGSSAKFEQLFRLLEQSKVSGRRVLIFSQFTQMLKM 924

Query: 84   L---------QKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +         Q  +  G+T  ++   +   +N+G+  +      + G GLNL  G + ++
Sbjct: 925  IATELSKRGEQYFYLDGQTPSEERIALCNSFNDGERDMFLISLKAGGTGLNLT-GADTVI 983

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q  +R       + G K  V V  LIA  TI+E + +  + K  +   
Sbjct: 984  LYDLWWNPAVEEQAADR-----AHRMGQKEVVQVIKLIANGTIEEKMSELQQKKKMLISD 1038

Query: 194  LLNA 197
            +L+ 
Sbjct: 1039 ILDG 1042


>gi|297531489|ref|YP_003672764.1| SNF2-related protein [Geobacillus sp. C56-T3]
 gi|297254741|gb|ADI28187.1| SNF2-related protein [Geobacillus sp. C56-T3]
          Length = 924

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 33/215 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +   +       E  +  +  ++    LQ+ NG        A+Y  E +  + V  
Sbjct: 692 ALYEQLVNDTL-----ERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVER 746

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  +IE+   N    ++   +      +Q+               G        
Sbjct: 747 SHKLEKLIELIEQIRTNDESCLIFTQYVRMGEMIQELLSDLFDERVLFLHGGVPKQTRDR 806

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+   K P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 807 MVDEFQAKKAPIFLLSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 860

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G  + V V+ LI   TI+E + + L  K  + D++
Sbjct: 861 GQTKFVHVHKLITIGTIEEKIDEMLEQKQALADII 895


>gi|270284872|ref|ZP_06194266.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270288900|ref|ZP_06195202.1| SNF2 family helicase [Chlamydia muridarum Weiss]
          Length = 1163

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   L
Sbjct: 967  HVLATLTRLKQICCHPAIF-AKDTPEPGDSAKYDMLMDLLGSLVDSGHKTVVFSQYTKML 1025

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +++          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1026 GIIKQDLEAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGGTGLNL-VGADTV 1084

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K  +  
Sbjct: 1085 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVK 1139

Query: 193  LLLNA 197
             ++N+
Sbjct: 1140 KVINS 1144


>gi|308067420|ref|YP_003869025.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
 gi|305856699|gb|ADM68487.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
          Length = 1121

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  QL      + E          K + L  II +  ++   I++   F + L  
Sbjct: 928  LAGLTRLRQLCCHPGLFIEGYT---GSSAKFEQLLEIITECLSSGKRILIFSQFTTMLQM 984

Query: 84   L---------QKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G+T   +   +   +NEG+  L      + G GLNL  G + ++
Sbjct: 985  IGRELAREGVSYFYLDGQTPAPERVELCSRFNEGERELFLISLKAGGTGLNLT-GADTVI 1043

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q        R  + G K+ V V  L+AQ T+++ + +  + K  + D 
Sbjct: 1044 LYDLWWNPAVEEQA-----TNRAHRMGQKKVVQVIRLVAQGTVEDKMYELQQKKKNMIDQ 1098

Query: 194  LLN 196
            ++ 
Sbjct: 1099 VIQ 1101


>gi|260790077|ref|XP_002590070.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
 gi|229275258|gb|EEN46081.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
          Length = 1878

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K        K+ AL++++ +       +++       +  L++               
Sbjct: 1409 PDKEVLVTDSGKLYALDILLTRLKQQGHRVLIYSQMTRMIDILEEFMWHRKHTYMRLDGS 1468

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      ++++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1469 SKISDRRDMVEDFQQRSDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1527

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++  K
Sbjct: 1528 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGK 1571


>gi|89894130|ref|YP_517617.1| hypothetical protein DSY1384 [Desulfitobacterium hafniense Y51]
 gi|89333578|dbj|BAE83173.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 967

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +   +  Q+ +    + +          K+   + ++E   A    ++V   F S L  
Sbjct: 773 LAALTRLRQICSHPGMFIDNYT---GESGKMLLFQELLEDSLAGGHRVLVFSQFTSMLDI 829

Query: 84  L---------QKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +            +  G T   +       +N G+  +      + G GLNL  G + ++
Sbjct: 830 IGEYLHSENIDYFYLSGSTKALERSRMAASFNNGEGQVFLISLKAGGTGLNLT-GADTVI 888

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F  WW+     Q  +R       + G + +V V  L+ Q TI+E V      K  + D 
Sbjct: 889 HFDPWWNPAVEDQATDR-----AHRIGQQNSVQVIKLLTQGTIEEKVNALQAKKKKLIDS 943

Query: 194 LLN 196
           ++ 
Sbjct: 944 VIQ 946


>gi|168180326|ref|ZP_02614990.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
 gi|182668683|gb|EDT80661.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
          Length = 1077

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F    ++E Y +++  G N       S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIEN---YEGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
             + L  I+  +      I++   F S L  + + F           G T  D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+     Q  +R       + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLT-SADIVIHFDPWWNPAVEDQASDR-----AHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D ++ 
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVIE 1054


>gi|295835764|ref|ZP_06822697.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825680|gb|EFG64393.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 788

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVH--DEKIK 57
            Y    RE    +      +             Q+ N  A Y  E      +     K+ 
Sbjct: 559 LYEAVVRESLAAIGSAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 618

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
           AL+ ++    A    ++V   +      L                G  ++     +  + 
Sbjct: 619 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVEARDALVDRFQ 678

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+     Q  +R       + G  R V
Sbjct: 679 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPAVEDQATDR-----AHRIGQTRHV 732

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ L+A+ T+++ +   +  K  + D +L
Sbjct: 733 QVHRLLAEGTVEDRIADLVAGKQALADAVL 762


>gi|256425205|ref|YP_003125858.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256040113|gb|ACU63657.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 959

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 28/214 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT-------VKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y++  R++Y +   + I     A+ T        +  Q+ N     ++E H       
Sbjct: 736 KSYNRI-RDMYKEKLLKQINESGMAASTIYVLEGLTRLRQICNAPQLVEQESHV--TSSV 792

Query: 55  KIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQE 103
           K+  L   I E   A  ++V   F   L  + K+            G T  +     +Q+
Sbjct: 793 KLDELMREISENTGAHKVLVFSQFTGMLQLIAKSMEGEGLPFLYLDGSTKAENRQQLVQQ 852

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   + + +      + G GL L    + +     WW+    QQ I+R       + G +
Sbjct: 853 FQTDEQVRVFLISLKAGGVGLTLT-AADYVYLVDPWWNPAAEQQAIDR-----THRIGQQ 906

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VF Y +I +++++E +L     K  I D L++
Sbjct: 907 NKVFAYKMICKDSVEEKILALQERKKMIADDLIS 940


>gi|149023010|gb|EDL79904.1| rCG26684 [Rattus norvegicus]
          Length = 1032

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             K        K+ AL++++ +  +    +++       +  L++     +         
Sbjct: 567 PGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 626

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 627 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 685

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 686 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 736


>gi|168182529|ref|ZP_02617193.1| helicase, Snf2 family [Clostridium botulinum Bf]
 gi|182674407|gb|EDT86368.1| helicase, Snf2 family [Clostridium botulinum Bf]
          Length = 1097

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             ++E+       I++   F S L  + K   +               +    + E+N+  
Sbjct: 933  ELVEEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAIEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
              L+ + TI+E ++     K  + + ++N+ LK E +
Sbjct: 1047 IKLVCKGTIEEKIIMLQEDKKELINNVMNSDLKNEHL 1083


>gi|237794935|ref|YP_002862487.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
 gi|229261620|gb|ACQ52653.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
          Length = 1097

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
             ++E+       I++   F S L  + K   +               +    + E+N+  
Sbjct: 933  ELVEEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAIEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
              L+ + TI+E ++     K  + + ++N+ LK E +
Sbjct: 1047 IKLVCKGTIEEKIIMLQEDKKELINNVMNSDLKNEHL 1083


>gi|297622033|ref|YP_003710170.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377334|gb|ADI39164.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
          Length = 868

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 21/179 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
            ++  Q+       +     +E    K++AL   +E  K      ++   F S L+ ++K
Sbjct: 679 LLRLRQICCHPYLVNG----QEGTSGKLEALIADMETIKEEGKKALIFSQFTSMLSIIKK 734

Query: 87  ---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     +  G+T ++         + +IP       + G GLNL    + ++ F  
Sbjct: 735 SCSKEGWKFCYLDGQTKERKEQVDHFQTDPEIPFFLISLKAGGVGLNLT-AADYVLLFDP 793

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           WW+       +ER  + R  + G K  V     +  ++I+E +L     K  + D LL+
Sbjct: 794 WWN-----PAVERQAIDRAHRIGRKDTVIAKRYLCLDSIEEKMLHLNTAKQHLADQLLD 847


>gi|73999783|ref|XP_858164.1| PREDICTED: similar to yeast INO80-like protein isoform 4 [Canis
            familiaris]
          Length = 1584

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1119 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1178

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1179 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1237

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1238 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1288


>gi|73999785|ref|XP_535436.2| PREDICTED: similar to yeast INO80-like protein isoform 1 [Canis
            familiaris]
          Length = 1519

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1054 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1113

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1114 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1172

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1173 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1223


>gi|312890761|ref|ZP_07750292.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311296754|gb|EFQ73892.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 964

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 6   KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           +++ EL   L+               +K  Q+AN     D+  +++    +       + 
Sbjct: 751 EYRNELLKSLEDGTFAKSQMQVLQGLIKLRQIANHPSMIDD--NYEGDSGKFEDVTHTLN 808

Query: 64  EKANA-APIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
              +    +++   F         + +   +   +  G T ++     +   + K  +  
Sbjct: 809 NVLDGGHKVLIFSQFVKQLTIYRQHFEKEHIPYLYLDGSTQNRGEIVKKFQEDEKTRVFL 868

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL     + +    WW+    QQ I+R       + G  + VF+Y  I +
Sbjct: 869 ISIKAGGVGLNLTEADYVFIL-DPWWNPAVEQQAIDR-----THRIGQTKNVFIYKFITK 922

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++E +L   + K  +   L+
Sbjct: 923 DSVEEKILALQQRKLKLSSALI 944


>gi|295693012|ref|YP_003601622.1| non-specific serine/threonine protein kinase [Lactobacillus
           crispatus ST1]
 gi|295031118|emb|CBL50597.1| Non-specific serine/threonine protein kinase [Lactobacillus
           crispatus ST1]
          Length = 1018

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y+   +++   L G+  E      F   ++  K  ++        E  H K     K+ 
Sbjct: 797 LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQINKLREICCDPHLLYENYHGK---SNKLI 853

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
           A   +I+   AN   I++   F + L  L +   + R             K    +Q++N
Sbjct: 854 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 913

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +   P +      + G G+NL  G ++++ +  WW+L   +Q  +R       + G K +
Sbjct: 914 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAAEKQATDR-----AHRIGQKHS 967

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 968 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 999


>gi|258545090|ref|ZP_05705324.1| Snf2 family protein [Cardiobacterium hominis ATCC 15826]
 gi|258519667|gb|EEV88526.1| Snf2 family protein [Cardiobacterium hominis ATCC 15826]
          Length = 1017

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 23/211 (10%)

Query: 2   KQYHKFQR----ELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   ++    +L   +  + IE          +K  Q+ N       ++        K
Sbjct: 796 KLYDATKKRYREQLLHQIAADGIEKSQLHILDGLLKLRQICNSPALL-ADREDYGDDSAK 854

Query: 56  IKAL-EVIIEKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
           +  L E I EK  A  I+V   F           D   +   +  G+T D+         
Sbjct: 855 LDLLLENIKEKTGAHKILVFSSFVKMLGLIQARLDAENIPYEYLDGQTRDRKAKVENFQT 914

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      + G GLNL     + +    WW+     Q I+R       + G ++ V
Sbjct: 915 NDAVRVFLISTKAGGTGLNLTEADYVFI-VDPWWNPAVENQAIDR-----SHRIGQEKHV 968

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Y +I +N+I+E +L     K  I + +++
Sbjct: 969 MAYRIICKNSIEEKILALQDKKRRIAESIIS 999


>gi|148696004|gb|EDL27951.1| INO80 complex homolog 1 (S. cerevisiae) [Mus musculus]
          Length = 1032

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             K        K+ AL+V++ +  +    +++       +  L++     +         
Sbjct: 567 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 626

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 627 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 685

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 686 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 736


>gi|37590263|gb|AAH59235.1| Ino80 protein [Mus musculus]
          Length = 1088

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             K        K+ AL+V++ +  +    +++       +  L++     +         
Sbjct: 623 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 682

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 683 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 741

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 742 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 792


>gi|94272618|ref|ZP_01292159.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93450064|gb|EAT01427.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 596

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 24/212 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA-VYYDEEKHWKEVHDEK 55
             +   +R     LQ +  EA  S      ++ ++  + A    +   E           
Sbjct: 371 ALHETIRRRAVEVLQEDEGEAAGSRHLKVLAELMRLRRAACHPRLVLGEGALMAGKLPLF 430

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWN 105
            + L  II  +N    +V   F + LA +++             G T  ++    +  + 
Sbjct: 431 AEVLHDII--SNRHKALVFSQFVAHLAIVREYLDGQGIGYQYLDGSTPARERKRAVAAFQ 488

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R V
Sbjct: 489 AGEGEVFCISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQERPV 542

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y L+ + +I+E +L     K  + + LL+ 
Sbjct: 543 TIYRLVTKGSIEEKILALHGRKRDLAENLLSG 574


>gi|159901735|ref|YP_001547981.1| non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159894774|gb|ABX07853.1| Non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1021

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDE 54
            K Y +++ +    L       G N          ++  Q+ N     +   +      ++
Sbjct: 800  KLYQRYRDQYRAQLLSLIDDHGMNDSRMKVLEGLLRLRQICNHPRLVESTFRGRSAKFEQ 859

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN 105
             ++ L ++  +A     ++   F   L  L++   Q         G+T ++     +   
Sbjct: 860  LLETLAIL--QAEGHKALIFSQFVQMLTILREHLDQQNVSYTYLDGKTQNRAAVVDRFQT 917

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +        + G GLNL    + ++    WW+    QQ  +R       + G ++ V
Sbjct: 918  DPHVHFFLISLKAGGVGLNLT-AADYVIHIDPWWNPAVEQQATDR-----THRIGQEKPV 971

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y LI + +++E ++     K  + D ++ +
Sbjct: 972  FIYKLIVRESVEEKMVHLQERKRALADSIITS 1003


>gi|149196784|ref|ZP_01873837.1| SNF2-related protein [Lentisphaera araneosa HTCC2155]
 gi|149139894|gb|EDM28294.1| SNF2-related protein [Lentisphaera araneosa HTCC2155]
          Length = 880

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           RE   D +G   +     S  +K  Q+ N    +     +K     K + L  I E    
Sbjct: 659 REAIADSEGIQRKGL-VLSSLMKFKQICNHPDQFLGGGPYKTTESGKFQRLMEICETIKE 717

Query: 69  A--PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFA 114
               ++V   F      L K                 ++ K    +  +   + +P    
Sbjct: 718 KREKVLVFTQFKEITEELAKFMESYFGHSGLVLHGSISVKKRKEMVARFQSDEYVPFFIL 777

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    N +V F  WW+     Q  +R       + G K+ V V+  + + 
Sbjct: 778 SIKAGGTGLNLT-AANHVVHFDRWWNPAVENQATDR-----AFRIGQKKNVMVHKFVCKG 831

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           TI+E +   L  K  I D +L++
Sbjct: 832 TIEEKISTMLEDKQKISDEVLSS 854


>gi|256850404|ref|ZP_05555832.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-1A-US]
 gi|262046447|ref|ZP_06019409.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-3A-US]
 gi|312977470|ref|ZP_07789218.1| Snf2 family protein [Lactobacillus crispatus CTV-05]
 gi|256712801|gb|EEU27794.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-1A-US]
 gi|260573318|gb|EEX29876.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-3A-US]
 gi|310895901|gb|EFQ44967.1| Snf2 family protein [Lactobacillus crispatus CTV-05]
          Length = 1131

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+  E      F   ++  K  ++        E  H K     K+ 
Sbjct: 910  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYHGK---SNKLI 966

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            A   +I+   AN   I++   F + L  L +   + R             K    +Q++N
Sbjct: 967  ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1026

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L   +Q  +R       + G K +
Sbjct: 1027 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAAEKQATDR-----AHRIGQKHS 1080

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1081 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1112


>gi|227878641|ref|ZP_03996558.1| Snf2 family helicase [Lactobacillus crispatus JV-V01]
 gi|256843239|ref|ZP_05548727.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            125-2-CHN]
 gi|227861761|gb|EEJ69363.1| Snf2 family helicase [Lactobacillus crispatus JV-V01]
 gi|256614659|gb|EEU19860.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            125-2-CHN]
          Length = 1175

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+  E      F   ++  K  ++        E  H K     K+ 
Sbjct: 954  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYHGK---SNKLI 1010

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            A   +I+   AN   I++   F + L  L +   + R             K    +Q++N
Sbjct: 1011 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1070

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L   +Q  +R       + G K +
Sbjct: 1071 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAAEKQATDR-----AHRIGQKHS 1124

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1125 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1156


>gi|322373853|ref|ZP_08048388.1| Snf2 family protein [Streptococcus sp. C150]
 gi|321277225|gb|EFX54295.1| Snf2 family protein [Streptococcus sp. C150]
          Length = 1031

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          KI +
Sbjct: 811  LAQLQQMQQGLILA-SDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKIDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   +    +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEGLLEELGISSYKLTGSTPSDSRQEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G ++ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VYRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|171913352|ref|ZP_02928822.1| Non-specific serine/threonine protein kinase [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1140

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
              +  Q+             +E    K+ AL  ++++ +     ++V   F + L  ++ 
Sbjct: 943  ITRLRQICCHPALVQPGADDEE--SAKLNALMELLDQLHDEGHKVLVFSQFVAMLKIIRD 1000

Query: 87   ---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                      +  G + ++              +      + G GLNL    + ++ +  
Sbjct: 1001 KLTGLNRPFHWLTGASQNRADIVKSFQETPDPSVFLLSLKAGGSGLNLT-AASYVILYDP 1059

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            WW+     Q I+R       + G  + V  Y L+A+N+I+E +    + KS +   +L
Sbjct: 1060 WWNPAVENQAIDR-----AHRIGQTQPVMAYRLLAKNSIEEKIRHLQQQKSLLSSDVL 1112


>gi|117619195|ref|YP_857375.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
 gi|117560602|gb|ABK37550.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
          Length = 1280

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E  W +    K+    
Sbjct: 1063 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPQLVMPE--WSQ-ASSKLDEAM 1119

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             ++E+A  N   ++V   F   L+ L+    Q          G +      +I  +    
Sbjct: 1120 ALLEEAIGNGHRVLVFSQFVDLLSLLRARIEQQQWDYCYLDGGCSAKSRQESILRFRHEA 1179

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+     Q  +R       + G  + V VY
Sbjct: 1180 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPAVEDQASDR-----AHRMGQTQPVTVY 1233

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1234 RLVCEQTVEEKIVALHDEKRALADGLLSG 1262


>gi|313900256|ref|ZP_07833752.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312954965|gb|EFR36637.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 1117

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 75/208 (36%), Gaps = 21/208 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M    +  +EL  +L       F      ++  Q+        EE         K+KA  
Sbjct: 897  MANLAQVNKELQQELDLVKTNRFQVLGMLMRLRQICCDPRLVYEE---VSQPSSKLKACM 953

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
             ++     N   +++  +F S L  +Q                   ++    +Q++ + +
Sbjct: 954  ELVSSLVENDKSVLLFSNFTSMLDLIQVELQHLHIPYFRMDGSTGKEERRELVQKFQDKE 1013

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      S G G+NL      ++ +  WW++    Q  +R       + G    V VY
Sbjct: 1014 KKVFLISLKSGGTGINLT-AAEAVIHYDPWWNVSAENQASDR-----AYRIGQNSRVQVY 1067

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI +NT++E +    + K  + D+ + 
Sbjct: 1068 KLIMRNTVEERIQHLQQMKKELADIFVE 1095


>gi|293380595|ref|ZP_06626650.1| SNF2 family N-terminal domain protein [Lactobacillus crispatus 214-1]
 gi|290922842|gb|EFD99789.1| SNF2 family N-terminal domain protein [Lactobacillus crispatus 214-1]
          Length = 1175

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+  E      F   ++  K  ++        E  H K     K+ 
Sbjct: 954  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYHGK---SNKLI 1010

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            A   +I+   AN   I++   F + L  L +   + R             K    +Q++N
Sbjct: 1011 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1070

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L   +Q  +R       + G K +
Sbjct: 1071 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAAEKQATDR-----AHRIGQKHS 1124

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1125 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1156


>gi|269302635|gb|ACZ32735.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1166

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++     +     V   +   L
Sbjct: 970  HVLATLTRLKQICCHPAIF-AKDAPEPGDSAKYDMLMDLLSSLVDSGHKTAVFSQYTKML 1028

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1029 GIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGGTGLNL-VGADTV 1087

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1088 IHYDMWWNPAVENQATDRV-----HRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1142

Query: 193  LLLNA 197
             ++N+
Sbjct: 1143 KVINS 1147


>gi|317498269|ref|ZP_07956568.1| SNF2 family domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894478|gb|EFV16661.1| SNF2 family domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 438

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 83/212 (39%), Gaps = 24/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y + +R+ Y DL G + I A    +K ++  QL  G +  D+ +    V+  K+ AL  
Sbjct: 226 LYDRIKRDSYADLDGGDHITATTVLTKLLRLQQLTGGFLLQDDSETPVLVNKAKLNALAD 285

Query: 62  IIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--------------QEW 104
           IIE     +   +++   F  ++  + +   +    +K    I              Q  
Sbjct: 286 IIEDYVIGSEKKLVIFARFIPEVKAIIEMVDKLLPKNKKQVAIYGDIKKELRGGLVKQFQ 345

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G G+ L    +  V++S  ++   + Q + RI      + G +  
Sbjct: 346 EDPDTMVFVGQIDTAGTGITLT-AADTCVYYSKNYNYATYSQSLSRI-----HRIGQRNV 399

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                L  + T+DE++ + L  K  +   +++
Sbjct: 400 CTYIDLEVEKTVDEMINKALSKKEDMAKTVVD 431


>gi|73999781|ref|XP_849183.1| PREDICTED: similar to yeast INO80-like protein isoform 3 [Canis
            familiaris]
          Length = 1560

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1095 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1154

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1155 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1213

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1214 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1264


>gi|302607772|emb|CBW45684.1| putative helicase [Streptomyces pristinaespiralis]
          Length = 936

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 21/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
             Y K  +E+   ++     A +           Q+ N  A +  ++         K++ 
Sbjct: 709 ALYRKHAQEVMDRIRASQGIARSGLVLKLLTGLKQICNHPAHFLKQDDTALSGRSGKLEL 768

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+ +++   A    ++V   + +    L++   +          G  + +    +Q + +
Sbjct: 769 LDELLDTITAEGGAVLVFTQYVAMAKLLERHLRERGIGAQLLHGGTPVPRREELVQRFQD 828

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R+V 
Sbjct: 829 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEAQATDR-----AYRIGQTRSVQ 882

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +IA+ TI++ +   L +K  + D +L
Sbjct: 883 VHKMIAEGTIEDRIAALLESKKDLADAVL 911


>gi|301754870|ref|XP_002913258.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Ailuropoda melanoleuca]
 gi|281338216|gb|EFB13800.1| hypothetical protein PANDA_001057 [Ailuropoda melanoleuca]
          Length = 1561

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1096 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1155

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1156 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1214

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1215 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1265


>gi|149692054|ref|XP_001503533.1| PREDICTED: INO80 complex homolog 1 (S. cerevisiae) [Equus caballus]
          Length = 1561

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1096 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1155

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1156 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1214

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1215 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1265


>gi|311244967|ref|XP_003121636.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Sus
            scrofa]
          Length = 1566

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1101 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1160

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1161 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1219

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1220 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1270


>gi|291403204|ref|XP_002718017.1| PREDICTED: INO80 complex homolog 1 [Oryctolagus cuniculus]
          Length = 1559

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1094 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1153

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1154 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1212

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1213 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1263


>gi|331218680|ref|XP_003322017.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309301007|gb|EFP77598.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1764

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            +   K+  L+ ++++       +++ +     +  +++                T+ +  
Sbjct: 1424 LDSGKLARLDSLLQELKTGGHRVLIYFQMTRMIDLMEEYLSFRHYRYLRLDGSSTISERR 1483

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +W N  +I +      + G G+NL    + ++F+   W+    QQ ++R       
Sbjct: 1484 DMVMDWQNRPEIFIFLLSTRAGGLGINLT-AADTVIFYDCDWNPSNDQQAMDR-----AH 1537

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G KR V VY LI   TIDE +L+  RTK T+QD ++
Sbjct: 1538 RLGQKRQVTVYRLITTGTIDERILKLARTKKTVQDAVV 1575


>gi|269302622|gb|ACZ32722.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1215

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSA---SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
            + ++     L+     A N     +      Q+ +  AV++ +   +K     K  A   
Sbjct: 965  QREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESGKWNAFVK 1024

Query: 62   IIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +++++      ++V   +   +  +         + A  QG++L++         +    
Sbjct: 1025 LLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETFTTDPNCQ 1084

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L
Sbjct: 1085 VFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKL 1138

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1139 ITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|15618744|ref|NP_225030.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|16752203|ref|NP_445571.1| Snf2/Rad54 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242195|ref|NP_877136.1| SNF protein [Chlamydophila pneumoniae TW-183]
 gi|4377149|gb|AAD18973.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|7189947|gb|AAF38809.1| helicase, Snf2/Rad54 family [Chlamydophila pneumoniae AR39]
 gi|33236706|gb|AAP98793.1| SNF protein [Chlamydophila pneumoniae TW-183]
          Length = 1215

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSA---SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
            + ++     L+     A N     +      Q+ +  AV++ +   +K     K  A   
Sbjct: 965  QREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESGKWNAFVK 1024

Query: 62   IIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +++++      ++V   +   +  +         + A  QG++L++         +    
Sbjct: 1025 LLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETFTTDPNCQ 1084

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L
Sbjct: 1085 VFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKL 1138

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1139 ITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|254518034|ref|ZP_05130090.1| DNA/RNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226911783|gb|EEH96984.1| DNA/RNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 1010

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 26  ASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
            S   K  QL  + ++  D+ K        KIKA++ II++   +   II+   F S L 
Sbjct: 815 LSYLTKLRQLCLDPSLLIDDFKE----ESAKIKAVKEIIKETIDSNKKIIIFSQFTSVLK 870

Query: 83  RL---------QKAFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           ++            +  G    K+    + E+N     +      + G GLNL    +++
Sbjct: 871 KIGNKLEEDDINYLYLDGSIKAKERINLVDEFNNRDKNIFLISLKAGGVGLNLT-SASVV 929

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F  WW+     Q  +R       + G K  V V  LI+++TI+E +++    K  +  
Sbjct: 930 VHFDPWWNPAVQDQATDR-----AHRIGQKNIVEVIKLISKDTIEEKIIKLQEEKKELIS 984

Query: 193 LLL--NALKKETIHV 205
            ++  +AL  ET++ 
Sbjct: 985 KIIDGDALSGETLNT 999


>gi|296214144|ref|XP_002753574.1| PREDICTED: putative DNA helicase INO80 complex homolog 1 [Callithrix
            jacchus]
          Length = 1556

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1092 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1151

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1152 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1210

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1211 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1261


>gi|126277710|ref|XP_001370967.1| PREDICTED: similar to INO80 complex homolog 1 [Monodelphis domestica]
          Length = 1558

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1093 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1152

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1153 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1211

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR   KS IQ ++++    K +T+ 
Sbjct: 1212 -----AHRLGQTKQVTVYRLICKGTIEERILQRANEKSEIQQMVISGGNFKPDTLK 1262


>gi|119612874|gb|EAW92468.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_a [Homo
           sapiens]
          Length = 1313

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 819 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 878

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 879 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 937

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 938 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 988


>gi|6330933|dbj|BAA86573.1| KIAA1259 protein [Homo sapiens]
          Length = 1561

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1096 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1155

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1156 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1214

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1215 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1265


>gi|315639730|ref|ZP_07894869.1| Snf2 family protein [Enterococcus italicus DSM 15952]
 gi|315484507|gb|EFU74964.1| Snf2 family protein [Enterococcus italicus DSM 15952]
          Length = 1055

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + +E    +    K++ ++ ++  A  N   +++   F S L
Sbjct: 857  SILAGLTRLRQICCDPRLFVDE---YQGGSGKLEQVKDLLLAAKENKRRVLLFSQFTSML 913

Query: 82   ARLQKAFPQ---------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + +     +         G T  KD    +  +NEG+  +      + G GLNL  G N 
Sbjct: 914  SLIADELDEMGLSHFYLRGSTPPKDRIEMVDAFNEGEADVFLISLKAGGTGLNLT-GANT 972

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V ++ +I++ TI+E +      K  + 
Sbjct: 973  VILYDLWWNPAVEEQAAGR-----AHRMGQKQVVEIWRMISEGTIEERMDDLQNEKRELF 1027

Query: 192  DLLLNALKKETIHV 205
              ++   + +   +
Sbjct: 1028 QKVIQGNEAQLQQM 1041


>gi|38708321|ref|NP_060023.1| putative DNA helicase INO80 complex homolog 1 [Homo sapiens]
 gi|114149322|sp|Q9ULG1|INO80_HUMAN RecName: Full=Putative DNA helicase INO80 complex homolog 1;
            Short=hINO80
 gi|119612875|gb|EAW92469.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|119612876|gb|EAW92470.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|148921591|gb|AAI46786.1| INO80 protein [Homo sapiens]
 gi|168269776|dbj|BAG10015.1| DNA helicase INO80 complex homolog 1 [synthetic construct]
          Length = 1556

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1091 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1150

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1151 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1209

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1210 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1260


>gi|297296191|ref|XP_002804786.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Macaca
            mulatta]
          Length = 1478

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1013 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1072

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1073 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1131

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1132 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1182


>gi|149918387|ref|ZP_01906877.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
 gi|149820687|gb|EDM80097.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
          Length = 1385

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 4    YHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y   +R     L+G     +     ++  +  Q A      DE        D   + L  
Sbjct: 1170 YEALRRRALESLEGGEQHTQRVRILAELTRLRQAAVDPRLLDERGPAGAKIDALTRQLLS 1229

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPL 111
            + E+      +V   F   +A +++AF                 +    +  +  G+  +
Sbjct: 1230 LREE--GHRALVFTQFLGAMALMRQAFEAAGIEYLELDGATPAAERARRVDAFQAGEGDV 1287

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G G+NL  G + ++    WW+     Q  +R       + G  R V VY L+
Sbjct: 1288 FMLSLRAGGVGMNLT-GADYVLHLDPWWNPAVEDQATDR-----AHRLGQSRPVTVYRLV 1341

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++ TI+E +L     K  + D LL  L+
Sbjct: 1342 SKGTIEEKILALHAEKRELTDDLLFGLE 1369


>gi|119612877|gb|EAW92471.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_c [Homo sapiens]
          Length = 1616

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1122 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1181

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1182 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1240

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1241 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1291


>gi|114656423|ref|XP_510320.2| PREDICTED: INO80 complex homolog 1 [Pan troglodytes]
          Length = 1556

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1091 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1150

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1151 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1209

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1210 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1260


>gi|284041008|ref|YP_003390938.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283820301|gb|ADB42139.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1003

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 26/210 (12%)

Query: 3   QYHKFQ---RELYCD-LQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           QY + +   R L  + ++ E I            K  Q+AN     D E    E    K+
Sbjct: 783 QYEEAKSYYRNLILERIEEEGIAKSQMVVLQGLTKLRQIANHPRMVDAE---YEGDSGKL 839

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWN 105
             + + +E A      ++V   F   L           ++ A+  G T+D+         
Sbjct: 840 DDMLMRLESAMTENHKVLVFSQFIKHLTVVRQYLKEKNIKYAYLDGSTVDRQSQVELFQT 899

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + L      + G G NL    + +     WW+     Q ++R       + G ++ V
Sbjct: 900 DDSVKLFLISLKAGGLGHNLT-AADYVFILDPWWNPAIEAQAVDR-----AHRIGQQKTV 953

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           F Y  IA+NT++E +L   R K  +   L+
Sbjct: 954 FTYKFIAKNTVEEKILSLQRAKQQLAGSLI 983


>gi|296138502|ref|YP_003645745.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
 gi|296026636|gb|ADG77406.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
          Length = 1081

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 20/177 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNS---------D 80
              +LA      DEE   ++V   D   + L+ ++E+ +A  ++V   F           D
Sbjct: 895  LRRLALDPSLVDEELAVEDVAKLDYLAEKLDELLEEKHA--VLVFSQFTGFLRKAAERLD 952

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               ++ A+  G T D+    I+++  G++ +      + G GLNL    +       WW+
Sbjct: 953  EEGVEYAYLDGSTTDR-AAAIEKFTSGEVQVFLISLKAGGFGLNLVQ-ADYCFLLDPWWN 1010

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I+R       + G  R+V VY L++  TI++ V++    K+ + + ++  
Sbjct: 1011 PAAEAQAIDR-----AHRIGQTRSVMVYRLVSAGTIEDKVMELKERKAALFESVVGG 1062


>gi|310640172|ref|YP_003944930.1| helicase, swf/snf [Paenibacillus polymyxa SC2]
 gi|309245122|gb|ADO54689.1| Helicase, SWF/SNF [Paenibacillus polymyxa SC2]
          Length = 1121

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   +  QL      + E          K + L  II +   +   +++   F + L  
Sbjct: 928  LAGLTRLRQLCCHPGLFIEGYT---GSSAKFEQLLEIITECLGSGKRMLIFSQFTTMLQM 984

Query: 84   L-----QKAFPQGRTLDKDPCTIQ-----EWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +     ++  P      + P   +      +NEG+  L      + G GLNL  G + ++
Sbjct: 985  VGRELSREGVPYFYLDGQTPAPERVELCSRFNEGERELFLISLKAGGTGLNLT-GADTVI 1043

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q        R  + G K+ V V  L+AQ T+++ + +  + K  + D 
Sbjct: 1044 LYDLWWNPAVEEQA-----TNRAHRMGQKKVVQVIRLVAQGTVEDKMYELQQKKKNLIDQ 1098

Query: 194  LLN 196
            ++ 
Sbjct: 1099 VIQ 1101


>gi|325978978|ref|YP_004288694.1| SNF2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            ATCC BAA-2069]
 gi|325178906|emb|CBZ48950.1| SNF2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            ATCC BAA-2069]
          Length = 1029

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
            + Q  +  +E        +I        S   +  Q+    +++ D           K+ 
Sbjct: 811  LAQLRQM-QETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDYNGE-----SGKLD 864

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            +L  ++ +   N    ++   F   L   +K   +              +      + +N
Sbjct: 865  SLRTLLTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFN 924

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G          + G GLNL  G + ++   LWW+     Q I R       + G K  V
Sbjct: 925  NGSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKENV 978

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 979  EVYRLITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|256027374|ref|ZP_05441208.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289765340|ref|ZP_06524718.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289716895|gb|EFD80907.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 1088

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 25/204 (12%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA- 66
            E        N       +   K  Q+      +Y D           KI A   +I+K+ 
Sbjct: 878  ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED-----ISSSSSKINACIELIKKSI 932

Query: 67   -NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAH 115
             N   I++   F + L           +      G T   K    ++++    +PL    
Sbjct: 933  ENKQRILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRNQLVEDFQNEAVPLFLIS 992

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    ++++    WW++    Q  +R       + G +  V V+ LI +NT
Sbjct: 993  LKAGGTGLNLTK-ASVVIHLDPWWNISAQNQATDR-----AHRIGQEDTVQVFNLITKNT 1046

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E +L     K  + D+ +   K
Sbjct: 1047 IEEKILNLQNKKKELSDIFVENSK 1070


>gi|237744605|ref|ZP_04575086.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229431834|gb|EEO42046.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 1088

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 25/204 (12%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA- 66
            E        N       +   K  Q+      +Y D           KI A   +I+K+ 
Sbjct: 878  ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED-----ISSSSSKINACIELIKKSI 932

Query: 67   -NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAH 115
             N   I++   F + L           +      G T   K    ++++    +PL    
Sbjct: 933  ENKQRILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRNQLVEDFQNEAVPLFLIS 992

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    ++++    WW++    Q  +R       + G +  V V+ LI +NT
Sbjct: 993  LKAGGTGLNLTK-ASVVIHLDPWWNISAQNQATDR-----AHRIGQEDTVQVFNLITKNT 1046

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E +L     K  + D+ +   K
Sbjct: 1047 IEEKILNLQNKKKELSDIFVENSK 1070


>gi|288906011|ref|YP_003431233.1| SWF/SNF family helicase [Streptococcus gallolyticus UCN34]
 gi|288732737|emb|CBI14311.1| putative SWF/SNF family helicase [Streptococcus gallolyticus UCN34]
          Length = 1029

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
            + Q  +  +E        +I        S   +  Q+    +++ D           K+ 
Sbjct: 811  LAQLRQM-QETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDYNGE-----SGKLD 864

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            +L  ++ +   N    ++   F   L   +K   +              +      + +N
Sbjct: 865  SLRTLLTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFN 924

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G          + G GLNL  G + ++   LWW+     Q I R       + G K  V
Sbjct: 925  NGSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKENV 978

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 979  EVYRLITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|119714405|ref|YP_921370.1| SNF2-related protein [Nocardioides sp. JS614]
 gi|119535066|gb|ABL79683.1| SNF2-related protein [Nocardioides sp. JS614]
          Length = 903

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
            EK+  L+ ++    A    ++V   + +    L+    +             + +    
Sbjct: 730 SEKVDLLDELVGTVLAEDGAVLVFTQYVAMARLLEGHLARAGVPHQLLHGGTPVREREAM 789

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +  G+ P+      + G GLNL    + +V    WW+    +Q  +R       + G
Sbjct: 790 VARFQAGETPVFLLSLKAGGTGLNLTR-ADHVVHVDRWWNPAVEEQATDR-----AYRIG 843

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + V V+ +I + T++E V + L  K  + D +L+
Sbjct: 844 QTKPVQVHRMITRGTVEEKVAELLTRKRALADAVLS 879


>gi|229542511|ref|ZP_04431571.1| SNF2-related protein [Bacillus coagulans 36D1]
 gi|229326931|gb|EEN92606.1| SNF2-related protein [Bacillus coagulans 36D1]
          Length = 933

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDE--KIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
             +  QL N    + +E+    + +   K++ L  + E         ++   +      +
Sbjct: 736 LNRLKQLCNHPALFLKEEKPAHLLERSFKLEKLATLTEAILNTGESCLIFTQYIGMGQMI 795

Query: 85  QKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           ++   +   LD           K    I+++     P+      + G GLNL    N ++
Sbjct: 796 RQMMKELFGLDVPFLNGSMPKAKRDQLIRDFQNKAFPVFLLSLKAGGTGLNLT-AANHVI 854

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+     Q  +R       + G +R V V+ LIA  T++E +   L  K  + D 
Sbjct: 855 HYDRWWNPAVENQATDR-----AHRIGQQRFVHVHKLIATGTLEEKIDAMLEKKQALNDE 909

Query: 194 LLNA 197
           ++ +
Sbjct: 910 IIQS 913


>gi|108760346|ref|YP_630479.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108464226|gb|ABF89411.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1006

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 21/207 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   + E+   L+        +    ++  Q A        +   +     K++AL  
Sbjct: 793 AIYAATREEVVSQLEAGG-SVLKALEALLRLRQAACHPALVPGQ---QAKTSSKVQALVE 848

Query: 62  IIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIP 110
            +  A  +    +V   + S L  ++ A            G T ++        +    P
Sbjct: 849 ALGTAVEDGHKALVFSQWTSMLDLIEPALQEAGIGFIRLDGSTANRGAVAASFQDPKGPP 908

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +   GLNL    + +     WW+     Q  +R       + G +R V VY L
Sbjct: 909 VMLISLKAGATGLNLT-AADHVFLVDPWWNPSVEAQAADR-----AHRIGQQRPVMVYRL 962

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++Q T++E +L     K  + +  L  
Sbjct: 963 VSQGTVEEKILTLQAKKRELFEAALGG 989


>gi|306832030|ref|ZP_07465185.1| Snf2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
 gi|304425956|gb|EFM29073.1| Snf2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
          Length = 1026

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
            + Q  +  +E        +I        S   +  Q+    +++ D           K+ 
Sbjct: 808  LAQLRQM-QETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDYNGE-----SGKLD 861

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            +L  ++ +   N    ++   F   L   +K   +              +      + +N
Sbjct: 862  SLRTLLTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFN 921

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G          + G GLNL  G + ++   LWW+     Q I R       + G K  V
Sbjct: 922  NGSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKENV 975

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 976  EVYRLITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|297196538|ref|ZP_06913936.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153265|gb|EFH32249.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 923

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 21/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
             Y K  +E+   ++     A +           Q+ N  A +  ++         K++ 
Sbjct: 696 ALYRKHAQEVMDRIRASQGIARSGLVLKLLTGLKQICNHPAHFLKQDDTALSGRSGKLEL 755

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+ +++   A    ++V   + +    L++   +          G  + +    +Q + +
Sbjct: 756 LDELLDTITAEGGAVLVFTQYVAMAKLLERHLRERGIGAQLLHGGTPVPRREELVQRFQD 815

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+     Q  +R       + G  R+V 
Sbjct: 816 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPAVEAQATDR-----AYRIGQTRSVQ 869

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +IA+ TI++ +   L +K  + D +L
Sbjct: 870 VHKMIAEGTIEDRIAALLESKKDLADAVL 898


>gi|149279882|ref|ZP_01886009.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter sp.
            BAL39]
 gi|149229472|gb|EDM34864.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter sp.
            BAL39]
          Length = 1139

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 84/216 (38%), Gaps = 25/216 (11%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  ++RE+   L  +       +  N     +K  Q+ N      ++  +      K+
Sbjct: 913  KVYDAYEREIRDYLTNQTDAEIASDTMNVLKGIMKLRQICNSPSLLSDD-EYYGASSAKM 971

Query: 57   KAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
            + L E I+ K+    I+V   F   L  ++    +         G+T ++     +  ++
Sbjct: 972  EVLLEQILSKSPQHKILVFSQFVGMLNLIRAELEKRQVSFAMLTGQTRNRQAVVDRFQDD 1031

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    + +     WW+     Q I+R       + G  + V 
Sbjct: 1032 ESIRVFLISLKAGGVGLNLTQ-ADYVYIVDPWWNPAVENQAIDR-----TYRIGQHKNVV 1085

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               LI  +T++E +++    K    DL+ + +K +T
Sbjct: 1086 AVRLICPDTVEEKIMEMQEHKR---DLVTDLVKTDT 1118


>gi|145298464|ref|YP_001141305.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
            A449]
 gi|142851236|gb|ABO89557.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
            A449]
          Length = 1280

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E  W +    K+    
Sbjct: 1063 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPELVMPE--WSQTSS-KLDEAM 1119

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK 108
             ++++A  N   ++V   F   L+ L+    Q +          +      +I  +    
Sbjct: 1120 ALLDEAIGNGHRVLVFSQFVDLLSLLRARIEQKKWDYCYLDGGCSAKSRQDSILRFRHEP 1179

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+     Q  +R       + G  + V VY
Sbjct: 1180 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPAVEDQASDR-----AHRMGQTQPVTVY 1233

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1234 RLVCEQTVEEKIVALHDEKRALADGLLSG 1262


>gi|212640482|ref|YP_002317002.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
 gi|212561962|gb|ACJ35017.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
          Length = 898

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++    L+  +  A             QL N    Y +EKH K++     K++ 
Sbjct: 674 LYEQIVQQSLEKLEQVDGFARRGIILQMLNSLKQLCNHPALYLKEKHPKQIVERSHKVEK 733

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRT-LDKDPCTIQEWN 105
           L  ++E+   N    ++   +      +Q            F  G T        I+++ 
Sbjct: 734 LLELVEQIRENGESCLIFTQYIQMGEMIQHLLSTHLKETVVFLNGSTPKQTRDEMIEQFQ 793

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL    N ++ F  WW+     Q  +R       + G  + V
Sbjct: 794 NGQFHIFILSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRIGQTKFV 847

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I   TI+E +   L  K  + + L+ +
Sbjct: 848 HVHKFITTGTIEEKIDDMLEKKQALNEQLIQS 879


>gi|19704495|ref|NP_604057.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
 gi|19714769|gb|AAL95356.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
          Length = 1089

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 73/204 (35%), Gaps = 25/204 (12%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA- 66
            E        N       +   K  Q+      +Y D           KI A   +IEK+ 
Sbjct: 879  ETLAQNIDVNTNKIEVLAMLTKLRQICIDPRLLYED-----VSSSSSKINACIELIEKSI 933

Query: 67   -NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAH 115
             N   I++   F + L           +      G T   K    ++ +    +PL    
Sbjct: 934  ENNQKILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQNEAVPLFLIS 993

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    ++++    WW++    Q  +R       + G +  V V+ LI +NT
Sbjct: 994  LKAGGTGLNLTK-ASVVIHLDPWWNISAQNQATDR-----AHRIGQEDTVQVFNLITKNT 1047

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E +L     K  + D+ +   K
Sbjct: 1048 IEEKILNLQSKKKELSDIFVENSK 1071


>gi|37360298|dbj|BAC98127.1| mKIAA1259 protein [Mus musculus]
          Length = 1196

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             K        K+ AL+V++ +  +    +++       +  L++     +         
Sbjct: 731 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 790

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 791 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 849

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 850 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 900


>gi|188591304|ref|YP_001795904.1| DNA/RNA helicase [Cupriavidus taiwanensis LMG 19424]
 gi|170938198|emb|CAP63184.1| putative DNA/RNA Helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 997

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHD----EKIKALEVIIE--KANAAPIIVAYHF 77
           +  ++ ++  + A        E   +         K++A   +     A+    +V   F
Sbjct: 790 HVLAQLMRLRRAACDPRLVTPEVAAQLSDQGGEGAKVRAFVELASGLAASGHKTLVFSQF 849

Query: 78  NSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              L  L++   +               +    +  +  G+  +      + G GLNL  
Sbjct: 850 VDFLQLLRQGLERAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNLT- 908

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++    WW+     Q + R       + G +R V VY LI   TI+E +++  R K
Sbjct: 909 AADYVIVADPWWNPAAEDQAMGR-----AHRIGQRRPVTVYRLINAGTIEERIVELHRDK 963

Query: 188 STIQDLLLNA 197
             + D LL A
Sbjct: 964 RALADGLLEA 973


>gi|108885078|ref|NP_072678.2| SNF2 family helicase putative [Mycoplasma genitalium G37]
 gi|94730430|sp|P47264|Y018_MYCGE RecName: Full=Uncharacterized ATP-dependent helicase MG018
 gi|84626126|gb|AAC71234.2| helicase SNF2 family, putative [Mycoplasma genitalium G37]
 gi|166078676|gb|ABY79294.1| helicase SNF2 family, putative [synthetic Mycoplasma genitalium
            JCVI-1.0]
          Length = 1031

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 21/202 (10%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y K + +   +++  +   A N  S  +K   + +  +  D + +  E + +   AL 
Sbjct: 813  KLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICS--LVKDNDVNDFEDNSKANAALN 870

Query: 61   VIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKI 109
            +I E   N   +I+   F   +   ++           F   +T+      IQ++N  K 
Sbjct: 871  IIYEALENKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDGRKTVKNRNTIIQKFNSAKE 930

Query: 110  P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P ++ A   + G G+NL     +++ F +WW+     Q  +R       + G  + V VY
Sbjct: 931  PCVMLASLKAGGVGINLT-AAEVVIHFDVWWNSAVENQATDR-----AHRIGQSKTVQVY 984

Query: 169  YLIAQNTIDELVLQRLRTKSTI 190
             +IA+NTI+E V Q    K  +
Sbjct: 985  RIIAKNTIEERVCQVQNQKQEL 1006


>gi|254975778|ref|ZP_05272250.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255093165|ref|ZP_05322643.1| putative helicase [Clostridium difficile CIP 107932]
 gi|255314907|ref|ZP_05356490.1| putative helicase [Clostridium difficile QCD-76w55]
 gi|255517581|ref|ZP_05385257.1| putative helicase [Clostridium difficile QCD-97b34]
 gi|255650692|ref|ZP_05397594.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260683779|ref|YP_003215064.1| putative helicase [Clostridium difficile CD196]
 gi|260687439|ref|YP_003218573.1| putative helicase [Clostridium difficile R20291]
 gi|260209942|emb|CBA63920.1| putative helicase [Clostridium difficile CD196]
 gi|260213456|emb|CBE05136.1| putative helicase [Clostridium difficile R20291]
          Length = 1059

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 895

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 896  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|160915633|ref|ZP_02077841.1| hypothetical protein EUBDOL_01640 [Eubacterium dolichum DSM 3991]
 gi|158432109|gb|EDP10398.1| hypothetical protein EUBDOL_01640 [Eubacterium dolichum DSM 3991]
          Length = 1102

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 73/203 (35%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE- 64
            +  REL   +  ++ +     +   K  QL        E          K+KA   +I+ 
Sbjct: 889  QVNRELSQMVNMQSTDKITILAMLTKLRQLCCEPRLVFEN---IHEPSSKLKACIHLIQT 945

Query: 65   -KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLF 113
             K N   +++   F S L  +     +              ++    ++ +      +  
Sbjct: 946  LKENKQKVLLFSSFTSMLELIADELYKEGISYYILTGATNKEERRELVERFQNDSTTVFL 1005

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL      ++ +  WW+     Q  +R       + G ++ V V+ L+ +
Sbjct: 1006 ISLKAGGTGLNLT-SAEAVIHYDPWWNQSAQNQATDR-----AYRIGQRKKVQVFKLVMK 1059

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            N+I+E + +    K  + D+ + 
Sbjct: 1060 NSIEEKIQKLQLMKKELADMFVE 1082


>gi|148379559|ref|YP_001254100.1| helicase, Snf2 family [Clostridium botulinum A str. ATCC 3502]
 gi|153931492|ref|YP_001383937.1| SNF2 family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153937278|ref|YP_001387483.1| SNF2 family helicase [Clostridium botulinum A str. Hall]
 gi|148289043|emb|CAL83133.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927536|gb|ABS33036.1| helicase, Snf2 family [Clostridium botulinum A str. ATCC 19397]
 gi|152933192|gb|ABS38691.1| helicase, Snf2 family [Clostridium botulinum A str. Hall]
          Length = 1097

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++++       I++   F S L  + K   +         G T   +    + ++N+  
Sbjct: 933  ELVQEGVDEGKKILLFSQFTSVLKNISKLLKKECIEYFYLDGSTNASERIKLVDKFNKNS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKIFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L+ + TI+E ++     K  + + ++N+
Sbjct: 1047 IKLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|74177549|dbj|BAB31000.3| unnamed protein product [Mus musculus]
          Length = 559

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             K        K+ AL+V++ +  +    +++       +  L++     +         
Sbjct: 345 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 404

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 405 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 463

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 464 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 514


>gi|255101318|ref|ZP_05330295.1| putative helicase [Clostridium difficile QCD-63q42]
          Length = 1059

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 895

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 896  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|115372534|ref|ZP_01459842.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310819012|ref|YP_003951370.1| swi/snf family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115370496|gb|EAU69423.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309392084|gb|ADO69543.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1000

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + E+   L+        +    ++  Q A        +   +     K+ AL   
Sbjct: 788 VYAATREEVVSQLEEGG-SVLKALEALLRLRQAACHPALVPGQ---QAKTSSKVLALIEA 843

Query: 63  IEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPL 111
           +  A  +    +V   + S L  ++ A            G T D+             P+
Sbjct: 844 LGTAVEDGHKALVFSQWTSMLDLIEPALREAGIGFVRLDGGTADRGGVAASFQAPEGPPV 903

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLNL    + +     WW+     Q  +R       + G +R V VY L+
Sbjct: 904 MLISLKAGATGLNLT-AADHVFLVDPWWNPSVEAQAADR-----AHRIGQQRPVMVYRLV 957

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q T++E +L     K  + +  L  
Sbjct: 958 SQGTVEEKILTLQEKKRALFEAALGG 983


>gi|126699796|ref|YP_001088693.1| putative helicase [Clostridium difficile 630]
 gi|115251233|emb|CAJ69064.1| putative DEAD-like helicase [Clostridium difficile]
          Length = 1062

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 840  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 898

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 899  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 956

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K +V 
Sbjct: 957  MDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGQKNSVQ 1010

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1011 VIKLIAKGTIEEKIIKLQESKKELINQFING 1041


>gi|255307194|ref|ZP_05351365.1| putative helicase [Clostridium difficile ATCC 43255]
          Length = 1059

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 895

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 896  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|32141133|ref|NP_733524.1| helicase [Streptomyces coelicolor A3(2)]
 gi|24413742|emb|CAD55164.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 890

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  E++        K++ L
Sbjct: 663 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 722

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 723 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 782

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 783 DAPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 836

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ TI++ +   L  K  + D +L + + 
Sbjct: 837 HRLIAEGTIEDRIAALLNRKRELADAVLGSGEA 869


>gi|254519060|ref|ZP_05131116.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226912809|gb|EEH98010.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 1084

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 23/184 (12%)

Query: 26   ASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL- 81
             S   K  QL  + +V  ++          K+ AL  I+++       I+V   F S L 
Sbjct: 888  LSYITKLRQLCLDPSVLIND----YVGTSGKVDALIEILQQGIEEGHKILVFSQFTSVLK 943

Query: 82   --------ARLQKAFPQGRTL-DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                      +  ++  G    +K    + E+NEG   +      + G GLNL    +I+
Sbjct: 944  NIASKLRSEHILFSYLDGSIPSEKRLELVNEFNEGINSVFLISLKAGGTGLNLT-SADIV 1002

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + F  WW+     Q  +R       + G    V V  LIA+N+I+E ++     K  + +
Sbjct: 1003 IHFDPWWNPAVEDQATDR-----AHRFGQTNIVEVIKLIARNSIEEKIIDLQDEKRKLIE 1057

Query: 193  LLLN 196
             +++
Sbjct: 1058 KIID 1061


>gi|170761655|ref|YP_001787000.1| SNF2 family helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408644|gb|ACA57055.1| helicase, Snf2 family [Clostridium botulinum A3 str. Loch Maree]
          Length = 1097

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++++       I++   F S L  + K   +         G T   +    + ++N+  
Sbjct: 933  ELVQEGVDEGKKILLFSQFTSVLKNISKLLEKECIEYFYLDGSTNASERIKLVNKFNKSS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKIFLISLKAGGTGLNLT-SANLVIHFDPWWNPAIEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L+ + TI+E ++     K  + + ++N+
Sbjct: 1047 IKLVCKGTIEEKIITLQEDKKELINDVMNS 1076


>gi|153940180|ref|YP_001390936.1| SNF2 family helicase [Clostridium botulinum F str. Langeland]
 gi|152936076|gb|ABS41574.1| helicase, Snf2 family [Clostridium botulinum F str. Langeland]
 gi|295318999|gb|ADF99376.1| helicase, Snf2 family [Clostridium botulinum F str. 230613]
          Length = 1097

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++++       I++   F S L  + +   +         G T   +    + ++N+  
Sbjct: 933  ELVQEGVDEGKKILLFSQFTSVLKNISRLLKKECIEYFYLDGSTNASERIKLVDKFNKNS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L+ + TI+E ++     K  + + ++N+
Sbjct: 1047 IKLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|313851062|ref|NP_001186586.1| putative DNA helicase INO80 complex homolog 1 [Gallus gallus]
          Length = 1560

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             +K        K+ AL++++ +  +    +++       +  L++               
Sbjct: 1095 PDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1154

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1155 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1213

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1214 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1264


>gi|293358005|ref|XP_230473.5| PREDICTED: yeast INO80-like protein [Rattus norvegicus]
          Length = 1559

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
              K        K+ AL++++ +  +    +++       +  L++               
Sbjct: 1094 PGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1153

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1154 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1212

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1213 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1263


>gi|296450398|ref|ZP_06892154.1| SNF2/RAD54 family helicase [Clostridium difficile NAP08]
 gi|296879479|ref|ZP_06903473.1| SNF2/RAD54 family helicase [Clostridium difficile NAP07]
 gi|296260659|gb|EFH07498.1| SNF2/RAD54 family helicase [Clostridium difficile NAP08]
 gi|296429625|gb|EFH15478.1| SNF2/RAD54 family helicase [Clostridium difficile NAP07]
          Length = 1062

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 840  KIYSVYSKDIQDKIKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 898

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 899  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 956

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K +V 
Sbjct: 957  IDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGQKNSVQ 1010

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1011 VIKLIAKGTIEEKIIKLQESKKELINQFING 1041


>gi|187779742|ref|ZP_02996215.1| hypothetical protein CLOSPO_03338 [Clostridium sporogenes ATCC 15579]
 gi|187773367|gb|EDU37169.1| hypothetical protein CLOSPO_03338 [Clostridium sporogenes ATCC 15579]
          Length = 1081

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E    +    K++    
Sbjct: 861  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDE---YKGGSSKLRIAME 917

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGK 108
            ++++       I++   F S L  + K   +               +    + E+N    
Sbjct: 918  LVQEGVDEGKKILLFSQFTSVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSN 977

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V 
Sbjct: 978  VKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEDQATDR-----AHRIGQKNLVQVI 1031

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1032 KLVCKGTIEEKIIMLQDDKKELINNVMNS 1060


>gi|32470671|ref|NP_863664.1| helicase [Rhodopirellula baltica SH 1]
 gi|32442816|emb|CAD71334.1| helicase [Rhodopirellula baltica SH 1]
          Length = 1176

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y   +     +L        +       + S   +  QLA      +    WK     
Sbjct: 950  KLYEDARLAALAELTAGGGAPSHEGRRRIQTLSWLTRLRQLACHPSLVEPS--WK-GTSS 1006

Query: 55   KIKALEVIIEKA--NAAPIIVAYHF-NS--------DLARLQKAFPQGRTLDKDPCT-IQ 102
            K++    ++E+        +V   F           D   +   +  G T   +    + 
Sbjct: 1007 KLQLFLSLVEELREGDHRALVFSQFVKHLSVVRAALDERGISYQYLDGATPSHERQRRVD 1066

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G+  L      + G GLNL    + ++    WW+     Q  +R       + G +
Sbjct: 1067 AFQNGEGDLFLISLKAGGTGLNLT-AADYVLHLDPWWNPAVEDQATDR-----AHRIGQE 1120

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RAV VY L+A+ TI+E +LQ    K  +   +L+ 
Sbjct: 1121 RAVTVYRLVAERTIEEQILQLHADKRELVAGILDG 1155


>gi|322805910|emb|CBZ03475.1| swf/SNF family helicase [Clostridium botulinum H04402 065]
          Length = 424

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
           + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 204 RIYKVYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRVAM 259

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
            ++++       I++   F S L  + K   +         G T   +    + E+N+  
Sbjct: 260 ELVQEGVDEGKKILLFSQFTSVLKNISKLLKKECIEYFYLDGSTNASERIKLVNEFNKNS 319

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 320 HVKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEDQATDR-----AHRIGQKNLVQV 373

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 374 IKLVCKGTIEEKIIMLQEDKKELINNVMNS 403


>gi|109470653|ref|XP_001080838.1| PREDICTED: yeast INO80-like protein-like [Rattus norvegicus]
          Length = 1559

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
              K        K+ AL++++ +  +    +++       +  L++               
Sbjct: 1094 PGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1153

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1154 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1212

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1213 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1263


>gi|327538183|gb|EGF24865.1| SWF/SNF family helicase [Rhodopirellula baltica WH47]
          Length = 966

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF-NS-- 79
           + S   +  QLA      +    WK     K++    ++E+        +V   F     
Sbjct: 770 TLSWLTRLRQLACHPSLVEPS--WK-GTSSKLQLFLSLVEELREGDHRALVFSQFVKHLS 826

Query: 80  ------DLARLQKAFPQGRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                 D   +   +  G T   +    +  +  G+  L      + G GLNL    + +
Sbjct: 827 VVRAALDERGISYQYLDGATPSHERQRRVDAFQNGEGDLFLISLKAGGTGLNLT-AADYV 885

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +    WW+     Q  +R       + G +RAV VY L+A+ TI+E +LQ    K  +  
Sbjct: 886 LHLDPWWNPAVEDQATDR-----AHRIGQERAVTVYRLVAERTIEEQILQLHADKRELVA 940

Query: 193 LLLNA 197
            +L+ 
Sbjct: 941 GILDG 945


>gi|312891015|ref|ZP_07750539.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311296482|gb|EFQ73627.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 945

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 22/208 (10%)

Query: 5   HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EV 61
            + +  ++ +++ E  +           +  Q+ N  +    E  W      K + L + 
Sbjct: 727 EQIRSSIFLEIEQEGFDKSKLTIIQGITRLRQVCNSPLLLQHEGFWCP-DSVKTEVLVDE 785

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIP 110
           ++       ++V   F   L  L K   + +              +         EG   
Sbjct: 786 LLNNLKGHKVLVFSQFTKMLDLLAKQLEELKLDFFHFDGQTPSKQRMEMVNSFQEEGNTT 845

Query: 111 -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +   GLNL    + ++ F  WW+    QQ I+R       + G  + VF Y 
Sbjct: 846 NIFLISLMAGNMGLNLT-AADYVILFDPWWNTAVEQQAIDR-----THRIGQTKKVFAYK 899

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +I ++TI+E ++     K ++ D L+  
Sbjct: 900 MICRDTIEEKIINLQEKKKSLSDSLIGG 927


>gi|170755011|ref|YP_001781230.1| SNF2 family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120223|gb|ACA44059.1| helicase, Snf2 family [Clostridium botulinum B1 str. Okra]
          Length = 1097

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALE 60
            + Y  + + +   L+    +     S   +  QL  + ++  DE K        K++   
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK----GGSSKLRIAM 932

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK 108
             ++++       I++   F S L  + +   +         G T   +    + ++N+  
Sbjct: 933  ELVQEGVDEGKKILLFSQFTSVLKNISRLLKKECIEYFYLDGSTNASERIKLVDKFNKNS 992

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V
Sbjct: 993  HVKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEDQATDR-----AHRIGQKNLVQV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L+ + TI+E ++     K  + + ++N+
Sbjct: 1047 IKLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|29840686|ref|NP_829792.1| Snf2/Rad54 family helicase [Chlamydophila caviae GPIC]
 gi|29835036|gb|AAP05670.1| helicase, Snf2/Rad54 family [Chlamydophila caviae GPIC]
          Length = 1205

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 24/222 (10%)

Query: 2    KQYHK-FQREL-----YCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE 54
            K Y    +RE          + + +   +  +      Q+ N  A+++     ++E    
Sbjct: 956  KLYQSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K  A   ++ ++  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWNAFVRLLHESLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQNSNILHM 1171


>gi|127512820|ref|YP_001094017.1| SNF2-related protein [Shewanella loihica PV-4]
 gi|126638115|gb|ABO23758.1| SNF2-related protein [Shewanella loihica PV-4]
          Length = 1161

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 19/188 (10%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-ALEVIIEKANAAPIIVAY 75
            GE   +  + S  V   Q   G     +E + +      ++  L  +IE  +   I++  
Sbjct: 955  GETENSKVAISPEVNLSQSVTGLDGAQDELNAESSKLAWLENKLPSMIE--DGRNILIFS 1012

Query: 76   HFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
             F S L  + +             GR+  +D   I+ +  G++ +      + G GLNL 
Sbjct: 1013 SFTSMLDLIAEQLERQQIGYEMLTGRSRHRDR-IIERFRRGEVNVFLISLKAGGSGLNLT 1071

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               ++++    WW+    +Q  +R       + G  + VFVY LI QNT++E + Q  ++
Sbjct: 1072 E-ADVVIHVDPWWNPAAEEQASDR-----AYRIGQDKPVFVYKLICQNTVEERIQQLQQS 1125

Query: 187  KSTIQDLL 194
            K  +   +
Sbjct: 1126 KQALAQSM 1133


>gi|308176367|ref|YP_003915773.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307743830|emb|CBT74802.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1115

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 21/201 (10%)

Query: 8    QRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            +R+    L  + +   F           LA      D E    +V   K++AL   ++  
Sbjct: 905  ERQKILHLVEDLDRNRFTIFQSLTHLRMLALEPSLVDPE--LSDVTGSKLEALFDQLDDV 962

Query: 66   -ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                   ++   F S L  L            +  G T ++    I+++ EG+ PL    
Sbjct: 963  VGEGHRALIFSQFTSYLKVLADKLTERGVKFVYLDGNTRNR-AKVIEQFKEGEAPLFLIS 1021

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +       WW+     Q I+R       + G  R V VY +I+Q T
Sbjct: 1022 LKAGGFGLNLTE-ADYCFLLDPWWNPAVEAQAIDR-----THRIGQTRQVMVYRMISQGT 1075

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            I+E V+    +K  +   +++
Sbjct: 1076 IEEKVVALQESKRKLISTVMD 1096


>gi|326920472|ref|XP_003206496.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Meleagris gallopavo]
          Length = 1545

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             +K        K+ AL++++ +  +    +++       +  L++               
Sbjct: 1094 PDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1153

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1154 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1212

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1213 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1263


>gi|89097017|ref|ZP_01169908.1| helicase, SWF/SNF family protein [Bacillus sp. NRRL B-14911]
 gi|89088397|gb|EAR67507.1| helicase, SWF/SNF family protein [Bacillus sp. NRRL B-14911]
          Length = 1061

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      + +     +    K
Sbjct: 838  KLYAAYLAKLRHDTLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDG---YKGSSAK 894

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDP-CTIQE 103
             + L  II+++  +   +++   F   L  + +          +  G+T  ++       
Sbjct: 895  YEQLLQIIKESRLSGRRVLIFSQFTKMLDMIGRELARQGIGFFYLDGQTPSEERVKLCGR 954

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+         + G GLNL  G + ++ + LWW+     Q  +R       + G + 
Sbjct: 955  FNSGEHDFFLISLKAGGTGLNLT-GADTVILYDLWWNPAVENQAADR-----AYRMGQRH 1008

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+A+ TI+E + +    K  + + ++ 
Sbjct: 1009 NVQVIKLLARGTIEEKMNELQDKKRNLIEEVIE 1041


>gi|326798503|ref|YP_004316322.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326549267|gb|ADZ77652.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 970

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 24/208 (11%)

Query: 4   YHKFQ---RELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEV-HDEKI 56
           Y K +   R +  +   + +   +         K  QLAN     DE+   +    +  +
Sbjct: 751 YEKIKSEYRNVLLEQSLDELMVKSQIQVLQGLTKLRQLANHPRMVDEDYEGESGKFENVV 810

Query: 57  KALEVIIEKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
             L+ ++ +     +++   F         + D  +++ A+  G T +++       N  
Sbjct: 811 HTLDSVLSR--GHKVLIFSQFVKQLEIFRRHFDKKKIRYAYLDGSTRNREDVVNDFRNNE 868

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ L      + G GLNL     + +    WW+    QQ I+R       + G  + VF+
Sbjct: 869 EVKLFLISIKAGGVGLNLIEADYVFIL-DPWWNPAVEQQAIDR-----SHRIGQTKNVFI 922

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y  I +++++E +L     K TI + L+
Sbjct: 923 YKFITKDSVEEKILALQDRKKTIANQLI 950


>gi|310779269|ref|YP_003967602.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
 gi|309748592|gb|ADO83254.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
          Length = 920

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 29/214 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-------KTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y + +R  Y DL    I+                +  QLA+      E      V   
Sbjct: 699 KIYDE-RRLFYYDLIHNQIKEHGIGKSQIFILQALNELRQLASCPEMKTEG----LVSST 753

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE 103
           K + L   I +A  N   I++  +F           D   ++  +  G T D+     + 
Sbjct: 754 KREILIENIREAVDNGHKILIFTNFIRSIENICEDLDKHNIKHLYMTGATKDRQSLVEKF 813

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+ K  +      + G GLNL    + +  +  WW+     Q ++R       + G  R
Sbjct: 814 QNDKKCKVFVMTLKTGGVGLNLT-AADTIFIYDPWWNKTAEDQAVDR-----SHRMGQDR 867

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VF Y LI + TI+E +L+    KS + + L+++
Sbjct: 868 TVFSYKLITKGTIEEKILKLQEEKSRLFEKLISS 901


>gi|54309827|ref|YP_130847.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
 gi|46914265|emb|CAG21045.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
          Length = 1298

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 24/208 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALE 60
             Y   ++E     +          +   +  Q+   +  V+ + ++   +++    +AL+
Sbjct: 1083 AYEAIRKESVAVAKSGK-GMVEVLACLTRLRQVCCDSRLVFSEMDQPSSKLN----EALQ 1137

Query: 61   VIIEKANAA-PIIVAYHFNSDL---------ARLQKAFPQGRTLDKDP-CTIQEWNEGKI 109
            ++ E       I+V   F + L           +  ++  G++  +     I  +  GK 
Sbjct: 1138 LVKEAREGQHRILVFSQFVTLLKMFADQLEGDGINYSYLDGKSSSRQRKQAIDAFTSGKK 1197

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++    WW+     Q  +R       + G  + V VY 
Sbjct: 1198 EVFLISLKAGGTGLNLTE-ADTVIHLDPWWNPAVEDQASDR-----AYRMGQTKPVTVYR 1251

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+A NTI+E ++   ++K  + D +L+ 
Sbjct: 1252 LVATNTIEEKIVLLHQSKRDLADKVLSG 1279


>gi|62234443|ref|NP_080850.2| putative DNA helicase INO80 complex homolog 1 [Mus musculus]
 gi|114149323|sp|Q6ZPV2|INO80_MOUSE RecName: Full=Putative DNA helicase INO80 complex homolog 1
 gi|123232376|emb|CAM22022.1| INO80 homolog (S. cerevisiae) [Mus musculus]
 gi|123236330|emb|CAM25341.1| INO80 homolog (S. cerevisiae) [Mus musculus]
          Length = 1559

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1094 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1153

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1154 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1212

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1213 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1263


>gi|15836368|ref|NP_300892.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
 gi|8979209|dbj|BAA99043.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
          Length = 1215

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSA---SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
            + ++     L+     A N     +      Q+ +  AV++ +   +K     K  A   
Sbjct: 965  QREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESGKWNAFVK 1024

Query: 62   IIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +++++      ++V   +   +  +         + A  QG++L++         +    
Sbjct: 1025 LLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETFTTDPNCQ 1084

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L
Sbjct: 1085 VFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKEIQALDRV-----HRIGQKNTVFIYKL 1138

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1139 ITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|163751730|ref|ZP_02158948.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Shewanella benthica
            KT99]
 gi|161328382|gb|EDP99541.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Shewanella benthica
            KT99]
          Length = 1077

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 77/195 (39%), Gaps = 18/195 (9%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R++ C      ++    +      L   N A             +     L  ++E+   
Sbjct: 865  RQVCCHPDLLKLDYIEPSDLANADLADPNSANGVQPLDTRSGKLNWLAAKLPGMLEE--G 922

Query: 69   APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              +++   F S L+ + +   +         G++ D+    ++ + + ++P+      + 
Sbjct: 923  RRVLIFSSFTSMLSLIGELLEKLGISFVELTGKSRDR-GALVERFQQREVPIFLISLKAG 981

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    ++++    WW+    QQ  +R       + G  ++VFVY LI ++T++E 
Sbjct: 982  GAGLNLT-AADVVIHIDPWWNPAAEQQASDR-----AHRIGQDKSVFVYKLICKDTVEER 1035

Query: 180  VLQRLRTKSTIQDLL 194
            +     +K  +   +
Sbjct: 1036 IQLLQESKHNLAQSI 1050


>gi|269955093|ref|YP_003324882.1| Non-specific serine/threonine protein kinase [Xylanimonas
            cellulosilytica DSM 15894]
 gi|269303774|gb|ACZ29324.1| Non-specific serine/threonine protein kinase [Xylanimonas
            cellulosilytica DSM 15894]
          Length = 1102

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 2    KQYH---KFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y    + +R     +  ++++    A         ++A  A   D       +   K+
Sbjct: 878  RAYDARLQRERTRVLGML-DDVDGNRLAIFKSLTTLRRMALDASLVDPSASA-GIPSSKL 935

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWN 105
              L   + +  A     +V   F   L+          L+ A+  G T  +    ++ + 
Sbjct: 936  DVLVEQVAEVVAEGHRALVFSQFTGYLSLVAARLDALGLRFAYLDGSTR-RRADVVRGFR 994

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG  PL      + G GLNL    + +     WW+     Q ++R       + G  R V
Sbjct: 995  EGDAPLFLISLKAGGFGLNLTE-ADHVFLLDPWWNPATEAQAVDR-----THRIGQTRPV 1048

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V  ++A  TI+E V+     K+     +L
Sbjct: 1049 NVVRMVAAGTIEEKVMALKERKAAAVGAVL 1078


>gi|184201460|ref|YP_001855667.1| SNF2 family helicase [Kocuria rhizophila DC2201]
 gi|183581690|dbj|BAG30161.1| putative helicase [Kocuria rhizophila DC2201]
          Length = 925

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS------- 79
                 LA      D E         K+ AL   + +        +V   F S       
Sbjct: 737 LTTLRMLALDPALVDPESTA---ASSKLDALFEQLPQLLQEGHRPLVFSQFTSFLKIVAR 793

Query: 80  --DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             D A +  A+  G T D+    ++ +  G+ P+      + G G+NL    +       
Sbjct: 794 RLDEAGIAYAYLDGSTKDR-AAALKTFRSGRAPVFLVSLKAGGFGINLTE-ADYCYLLDP 851

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           WW+     Q ++R       + G  R V VY ++AQ+TI+E V++    K+ +   +L+
Sbjct: 852 WWNPAAENQAVDR-----THRIGQTRKVMVYRMVAQDTIEEKVMELKARKAELFSAVLD 905


>gi|157375524|ref|YP_001474124.1| non-specific serine/threonine protein kinase [Shewanella sediminis
            HAW-EB3]
 gi|157317898|gb|ABV36996.1| Non-specific serine/threonine protein kinase [Shewanella sediminis
            HAW-EB3]
          Length = 1090

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 32/192 (16%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
              Q +++ +F   S      + A G                K+  L   +    A    I
Sbjct: 892  SFQSDDVTSFTQESVEQGLTEFATG--------------SGKLNWLADKLPSMLAEGRRI 937

Query: 72   IVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
            ++   F S L  + +   Q         G++ D+    ++ + + ++P+      + G G
Sbjct: 938  LIFSSFTSMLTLIGELLEQLAVTYVELTGKSRDRAS-LVKRFQQHEVPVFLISLKAGGAG 996

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++    WW+    QQ  +R       + G  ++VFVY LI ++T++E +  
Sbjct: 997  LNLT-AADVVIHMDPWWNPAAEQQASDR-----AHRIGQDKSVFVYKLICKDTVEERIQL 1050

Query: 183  RLRTKSTIQDLL 194
               +K ++   +
Sbjct: 1051 LQESKQSLAQSI 1062


>gi|329943269|ref|ZP_08292043.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|313848419|emb|CBY17423.1| putative DNA helicase-related protein [Chlamydophila psittaci RD1]
 gi|325506669|gb|ADZ18307.1| putative DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814816|gb|EGF84806.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|328915108|gb|AEB55941.1| helicase, Snf2/Rad54 family [Chlamydophila psittaci 6BC]
          Length = 1205

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 24/222 (10%)

Query: 2    KQY-HKFQREL-----YCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE 54
            K Y    +RE          + + +   +  +      Q+ N  A+++     ++E    
Sbjct: 956  KLYLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K +A   ++  +  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWEAFVRLLHDSLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|162452831|ref|YP_001615198.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
 gi|161163413|emb|CAN94718.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
          Length = 1270

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
            +   K+     ++E+  A     +V   F S LA +++A            G T  K   
Sbjct: 1075 LDSSKLARFLGLVEELCAEGQRALVFSQFTSHLALVREALEARGVAYVYLDGETPRKARA 1134

Query: 100  T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              ++E+ EG  PL      + G G+NL    N ++    WW+     Q  +R       +
Sbjct: 1135 ERVREFQEGSAPLFLISLKAGGFGINLTAATN-VIHLDPWWNPAVEDQASDR-----AHR 1188

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G +R V +Y L+A  TI+E +L     K ++   +L  
Sbjct: 1189 LGQRRPVTIYRLVALGTIEEKMLSLHAEKRSLVAQVLGG 1227


>gi|62185500|ref|YP_220285.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
 gi|62148567|emb|CAH64339.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
          Length = 1206

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 24/222 (10%)

Query: 2    KQY-HKFQREL-----YCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE 54
            K Y    +RE          + + +   +  +      Q+ N  A+++     ++E    
Sbjct: 956  KLYLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K +A   ++  +  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWEAFVRLLHDSLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|327259622|ref|XP_003214635.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Anolis
            carolinensis]
          Length = 1421

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             +K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1095 PDKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1154

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1155 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1213

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1214 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1264


>gi|325279022|ref|YP_004251564.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
 gi|324310831|gb|ADY31384.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
          Length = 994

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 22/207 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKAL 59
           ++ Y   +RE   +L+ +    F      ++  Q+AN     +   +       E  + L
Sbjct: 785 VRNYILSERENQGELRSD----FMVLKALIRLRQIANHPRLVETGYEGNSGKFSEVFRML 840

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
             +I  A+   ++V   F   L  +         + A   G T D++        + +  
Sbjct: 841 GEVI--ASGHKVLVFSSFVKYLKMVAEETMVRGWKYAMLTGLTADREQTIRHFQADPECR 898

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL     + +    WW++    Q + R       + G KRAVFVY  
Sbjct: 899 IFLISLKAGGVGLNLTEADYVFIL-DPWWNVAAENQAVSR-----AHRIGQKRAVFVYRF 952

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I   T++E +L     K  + D ++ A
Sbjct: 953 ITAGTLEEKILAIQERKQRLADSVITA 979


>gi|260494465|ref|ZP_05814595.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
 gi|260197627|gb|EEW95144.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
          Length = 683

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 25/204 (12%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA- 66
           E        N       +   K  Q+      +Y D           KI A   +I+K+ 
Sbjct: 473 ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED-----ISSSSSKINACIELIKKSI 527

Query: 67  -NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAH 115
            N   I++   F + L           +      G T   K    ++++    +PL    
Sbjct: 528 ENKQRILLFSSFTTVLDLVAQECDNLSIPYFILTGETNKIKRNQLVEDFQNEAVPLFLIS 587

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    ++++    WW++    Q  +R       + G +  V V+ LI +NT
Sbjct: 588 LKAGGTGLNLTK-ASVVIHLDPWWNISAQNQATDR-----AHRIGQEDTVQVFNLITKNT 641

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           I+E +L     K  + D+ +   K
Sbjct: 642 IEEKILNLQNKKKELSDIFVENSK 665


>gi|312868420|ref|ZP_07728620.1| SNF2 family N-terminal domain protein [Streptococcus parasanguinis
            F0405]
 gi|311096165|gb|EFQ54409.1| SNF2 family N-terminal domain protein [Streptococcus parasanguinis
            F0405]
          Length = 1032

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                  S  ++  Q+ +    + E+    +    K+++L  ++ +       +++   F 
Sbjct: 832  SKVEILSGLMRLRQICDTPALFMED---YQGDSGKLESLRDLLGQIKDGEHRVLIFSQFR 888

Query: 79   SDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYG 128
              L  L+K   Q         G T  KD   +   +N G+         + G GLNL  G
Sbjct: 889  GMLDILEKEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHAFLISLKAGGVGLNLT-G 947

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++   LWW+     Q I R       + G ++ V VY +I + TI+E + +   +K 
Sbjct: 948  ADTVILVDLWWNPAVEDQAIGR-----AHRMGQEQNVEVYRMITRGTIEEKIQELQASKR 1002

Query: 189  TIQDLLLNALKKE 201
             +   +L+  +  
Sbjct: 1003 HLVSTILDGTETR 1015


>gi|294660619|ref|NP_853484.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284812282|gb|AAP57052.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284930981|gb|ADC30920.1| SNF2 family helicase [Mycoplasma gallisepticum str. R(high)]
 gi|284931739|gb|ADC31677.1| SNF2 family helicase [Mycoplasma gallisepticum str. F]
          Length = 1108

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 30/217 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNS--------ASKTVKCLQLANGAVYYDEEKHWKEVH 52
            M  Y K ++E+  ++         S        A    +  Q+       +      E  
Sbjct: 882  MSFYRKREQEVKEEILKIIQNKEQSRKGLGIMLAKLLNELRQICCSPKLLNPS---FEGE 938

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYH-------FNSDLAR--LQKAFPQGRTLDK-DPCT 100
            + K  A   II  A  +    ++          F  +L +  ++     G T  +     
Sbjct: 939  NAKFVAAMDIINNAIKSNKKTLLFSQYLGVISLFKKELEQRNIKYFILTGDTPKEVRLQY 998

Query: 101  IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + ++N  K P +  A   + G GLNL  G  I++ + LWW+L    Q  +R       + 
Sbjct: 999  VNDFNNAKEPAVFIASLKAGGVGLNLT-GAEIVIHYDLWWNLALQNQATDR-----AHRI 1052

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G +  + VY +IA +TI+E ++     K  +   L+ 
Sbjct: 1053 GQRNHLQVYRIIAADTIEERIVAIQERKKELAAKLIQ 1089


>gi|162450775|ref|YP_001613142.1| Snf2/Rad54 family helicase [Sorangium cellulosum 'So ce 56']
 gi|161161357|emb|CAN92662.1| helicase, SNF2/RAD54 family [Sorangium cellulosum 'So ce 56']
          Length = 1031

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 30/215 (13%)

Query: 3    QYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
             Y   +   R+   +   E      +    ++  Q A                       
Sbjct: 806  LYDAVRAATRKDVVEKLAEGASVMAALEALLRLRQAACHPALIPGSSAGGAAPAARSAPS 865

Query: 53   ---DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
                  I+ALE  +  A+    +V   + S L  ++              G T D+    
Sbjct: 866  SKVTRLIEALEECV--ADGHKALVFSQWTSLLDLVEPHLGAAGIPWSRLDGGTRDRAGVV 923

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +  + G  P++     + G GLNL    + +     WW+     Q  +R       + G
Sbjct: 924  NEFQSPGGPPVMLISLKAGGTGLNLT-AADHVFLLDPWWNPAVEDQAADR-----AHRIG 977

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R V V+ L+A++T++E +L     K  I    L
Sbjct: 978  QHRPVMVHRLVAKDTVEEGILALQERKRAIAGAAL 1012


>gi|228476452|ref|ZP_04061142.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251873|gb|EEK10919.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 1031

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   +    +              D      + +N+
Sbjct: 866  LRELLSQIKESDHRVLIFSQFRGMLDITEGLLQELGISSYKLTGSTPSDSRQEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G ++ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VYRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|169343905|ref|ZP_02864901.1| putative helicase [Clostridium perfringens C str. JGS1495]
 gi|169298025|gb|EDS80116.1| putative helicase [Clostridium perfringens C str. JGS1495]
          Length = 1065

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 864  DKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILLFSQFT 920

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 921  SVLKKIEEDFKKEDISYLYLDGGTSAKDRVERVKRFNEDSNIKVFLISLKAGGVGLNLT- 979

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+    +Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 980  SASVVIHFDPWWNPAVEEQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1034

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1035 RELIQSLMDG 1044


>gi|94263787|ref|ZP_01287593.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93455798|gb|EAT05965.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 1439

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGA-VYYDEEKHWKEVHDEK 55
              +   +R     LQ +  EA  S      ++ ++  + A    +   +           
Sbjct: 1214 ALHETIRRRAVEVLQEDEGEAAGSRHLKVLAELMRLRRAACHPRLVLGKGALMAGKLPLF 1273

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWN 105
             + L  II  +N    +V   F   LA +++             G T  ++    +  + 
Sbjct: 1274 AEVLHDII--SNRHKALVFSQFVDHLAIVREYLDGQGIGYQYLDGSTPARERQRAVAAFQ 1331

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL    + ++    WW+     Q  +R       + G +R V
Sbjct: 1332 AGEGEVFCISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQERPV 1385

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y L+ + +I+E +L     K  + + LL  
Sbjct: 1386 TIYRLVTKGSIEEKILALHGHKRDLAENLLRG 1417


>gi|312277649|gb|ADQ62306.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus ND03]
          Length = 1031

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G K+ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|329664944|ref|NP_001192313.1| putative DNA helicase INO80 complex homolog 1 [Bos taurus]
 gi|296483346|gb|DAA25461.1| brahma-like [Bos taurus]
          Length = 1566

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
              K        K+ AL+V++ +  +    +++       +  L++     +         
Sbjct: 1101 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1160

Query: 94   --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1161 SKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1219

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1220 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1270


>gi|322390087|ref|ZP_08063622.1| Snf2 family protein [Streptococcus parasanguinis ATCC 903]
 gi|321143214|gb|EFX38657.1| Snf2 family protein [Streptococcus parasanguinis ATCC 903]
          Length = 881

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                 S  ++  Q+ +    + E+    +    K+++L  ++ +       +++   F 
Sbjct: 681 SKVEILSGLMRLRQICDTPALFMED---YQGDSGKLESLRDLLGQIKDGEHRVLIFSQFR 737

Query: 79  SDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYG 128
             L  L++   Q         G T  KD   +   +N G+         + G GLNL  G
Sbjct: 738 GMLDILEQEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHAFLISLKAGGVGLNLT-G 796

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++   LWW+     Q I R       + G ++ V VY +I + TI+E + +   +K 
Sbjct: 797 ADTVILVDLWWNPAVEDQAIGR-----AHRMGQEQNVEVYRMITRGTIEEKIQELQASKR 851

Query: 189 TIQDLLLNALKKE 201
            +   +L+  +  
Sbjct: 852 HLVSTILDGTETR 864


>gi|225871163|ref|YP_002747110.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225700567|emb|CAW95068.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 1034

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK-----TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Y    R++   L     +  N +         +  Q+ +    + +     +    K+
Sbjct: 812  AIYLAQLRQMQERLSAATDDDINRSKLEILSGITRLRQICDTPSLFMD----YQGGSGKL 867

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
              L  ++ +   N    ++   F   LA +++   Q              +      + +
Sbjct: 868  DNLRTLLLQIKENGHRALLFSQFKGMLALVKQEMDQLGLSSYTITGSTPANDRQEMTRAF 927

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G          + G GLNL  G + ++   LWW+     Q I R       + G +  
Sbjct: 928  NNGSKDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEDN 981

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI + TI+E +L+    K  +   +L+ 
Sbjct: 982  VEVYRLITRGTIEEKILELQENKRHLITTVLDG 1014


>gi|168180252|ref|ZP_02614916.1| helicase, Snf2 family [Clostridium botulinum NCTC 2916]
 gi|182668714|gb|EDT80692.1| helicase, Snf2 family [Clostridium botulinum NCTC 2916]
          Length = 1097

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  + + +   L+    +     S   +  QL        +E    +    K++    
Sbjct: 877  KIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDE---YKGGSSKLRIAME 933

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK- 108
            ++++       I++   F S L  + K   +               +    + E+N+   
Sbjct: 934  LVQEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAIEDQATDR-----AHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|261209238|ref|ZP_05923630.1| Snf2 family protein [Enterococcus faecium TC 6]
 gi|289565987|ref|ZP_06446425.1| Snf2 family protein [Enterococcus faecium D344SRF]
 gi|294616209|ref|ZP_06696006.1| Snf2 family protein [Enterococcus faecium E1636]
 gi|260076784|gb|EEW64519.1| Snf2 family protein [Enterococcus faecium TC 6]
 gi|289162185|gb|EFD10047.1| Snf2 family protein [Enterococcus faecium D344SRF]
 gi|291590964|gb|EFF22676.1| Snf2 family protein [Enterococcus faecium E1636]
          Length = 1064

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEIISMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNTG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|55820334|ref|YP_138776.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736319|gb|AAV59961.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 1031

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G K+ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|55822225|ref|YP_140666.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738210|gb|AAV61851.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 1031

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G K+ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|110803396|ref|YP_698309.1| DNA/RNA helicase, SNF2 [Clostridium perfringens SM101]
 gi|110683897|gb|ABG87267.1| putative helicase [Clostridium perfringens SM101]
          Length = 1069

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +    +    K+  ++ I++ A+     I++   F 
Sbjct: 868  DKINLFAYLTKLREICLDPSLVVPD---YKGGSSKLTVVKEIVKDASESGKKILLFSQFT 924

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 925  SVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 983

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 984  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1038

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1039 RELIQSLMDG 1048


>gi|13507759|ref|NP_109708.1| helicases [Mycoplasma pneumoniae M129]
 gi|2493354|sp|P75093|Y020_MYCPN RecName: Full=Uncharacterized ATP-dependent helicase MPN_020
 gi|1673793|gb|AAB95782.1| helicase-like protein [Mycoplasma pneumoniae M129]
          Length = 1030

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 22/202 (10%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y + +     +++  ++  +FN  +  +K   L +        +   E   +K  ALE
Sbjct: 813  KLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCS---LPKNSQGILENSAKKEAALE 869

Query: 61   VIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
            +I E   N   II+   F   +   +  F +           ++       I+++N  K 
Sbjct: 870  IIHEAIENQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAKN 929

Query: 110  P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P +L A   + G G+NL     +++ F +WW+     Q  +R       + G K+ V VY
Sbjct: 930  PCVLLASLKAGGVGINLT-AAEVVIHFDVWWNTAVENQATDR-----AHRIGQKKTVQVY 983

Query: 169  YLIAQNTIDELVLQRLRTKSTI 190
             +IA+NTI+E V Q    K  +
Sbjct: 984  RIIAKNTIEERVCQVQAEKQEL 1005


>gi|226948925|ref|YP_002804016.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
 gi|226844507|gb|ACO87173.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1097

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  + + +   L+    +     S   +  QL        +E    +    K++    
Sbjct: 877  KIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDE---YKGGSSKLRIAME 933

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK- 108
            ++++       I++   F S L  + K   +               +    + E+N+   
Sbjct: 934  LVQEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+     Q  +R       + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAIEDQATDR-----AHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|296875956|ref|ZP_06900015.1| Snf2 family protein [Streptococcus parasanguinis ATCC 15912]
 gi|296433031|gb|EFH18819.1| Snf2 family protein [Streptococcus parasanguinis ATCC 15912]
          Length = 1032

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                  S  ++  Q+ +    + E+    +    K+++L  ++ +       +++   F 
Sbjct: 832  SKVEILSGLMRLRQICDTPALFMED---YQGDSGKLESLRDLLGQIKDGDHRVLIFSQFR 888

Query: 79   SDLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYG 128
              L  L++   Q         G T  KD   +   +N G+         + G GLNL  G
Sbjct: 889  GMLDILEQEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHAFLISLKAGGVGLNLT-G 947

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++   LWW+     Q I R       + G ++ V VY +I + TI+E + +   +K 
Sbjct: 948  ADTVILVDLWWNPAVEDQAIGR-----AHRMGQEQNVEVYRMITRGTIEEKIQELQASKR 1002

Query: 189  TIQDLLLNALKKE 201
             +   +L+  +  
Sbjct: 1003 HLVSTILDGTETR 1015


>gi|332024475|gb|EGI64673.1| Putative DNA helicase Ino80 [Acromyrmex echinatior]
          Length = 1115

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
            +K        K+  L+ ++ +       +++       +  L++               
Sbjct: 555 PDKQTLVTDAGKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGS 614

Query: 92  RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +      + ++ +   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 615 SKISDRRDMVADFQKRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 673

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                  + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 674 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 724


>gi|301633331|gb|ADK86885.1| SNF2 family N-terminal domain protein [Mycoplasma pneumoniae FH]
          Length = 1030

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 22/202 (10%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y + +     +++  ++  +FN  +  +K   L +        +   E   +K  ALE
Sbjct: 813  KLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCS---LPKNSQGILENSAKKEAALE 869

Query: 61   VIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
            +I E   N   II+   F   +   +  F +           ++       I+++N  K 
Sbjct: 870  IIHEAIENQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAKN 929

Query: 110  P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P +L A   + G G+NL     +++ F +WW+     Q  +R       + G K+ V VY
Sbjct: 930  PCVLLASLKAGGVGINLT-AAEVVIHFDVWWNTAVENQATDR-----AHRIGQKKTVQVY 983

Query: 169  YLIAQNTIDELVLQRLRTKSTI 190
             +IA+NTI+E V Q    K  +
Sbjct: 984  RIIAKNTIEERVCQVQAEKQEL 1005


>gi|256789242|ref|ZP_05527673.1| helicase [Streptomyces lividans TK24]
          Length = 887

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  E++        K++ L
Sbjct: 660 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 719

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 720 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 779

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 780 DAPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 833

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ TI++ +   L  K  + D +L + + 
Sbjct: 834 HRLIAEGTIEDRIAALLNCKRELADAVLGSGEA 866


>gi|289773131|ref|ZP_06532509.1| helicase [Streptomyces lividans TK24]
 gi|289703330|gb|EFD70759.1| helicase [Streptomyces lividans TK24]
          Length = 988

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N  A +  E++        K++ L
Sbjct: 761 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 820

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 821 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 880

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL    + +V +  WW+     Q  +R       + G  R V V
Sbjct: 881 DAPVFLLSLKAAGTGLNLTRAEH-VVHYDRWWNPAVEAQATDR-----AYRIGQTRPVQV 934

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + LIA+ TI++ +   L  K  + D +L + + 
Sbjct: 935 HRLIAEGTIEDRIAALLNCKRELADAVLGSGEA 967


>gi|223935408|ref|ZP_03627325.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223895818|gb|EEF62262.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1184

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 45/231 (19%)

Query: 5    HKFQRELYCDLQGENIEAFNS-------------------------ASKTVKCLQLANGA 39
             + + +LYC+++GE    + +                          +  ++  Q++   
Sbjct: 945  DRIEEDLYCEMEGEQKTLYRAELKRAQQMLLRVKTQKEFAKERFHFLTSLLRLRQISCHP 1004

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFP--- 89
                 E         K+ AL   +E        ++V   F   L  L+     K +P   
Sbjct: 1005 RLVKPESRA---SSAKVDALFEQLEPLVEEGQKVLVFSQFVDMLDILRTDIEAKGWPLFY 1061

Query: 90   -QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              G T ++     +        +      + G GLNL    + +V F  WW+     Q I
Sbjct: 1062 LAGDTENRGELVQRFQATEGAAVFLISLKAGGFGLNLT-AASYVVLFDPWWNPAVENQAI 1120

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +R       + G  R V  Y L+ + +I+E + Q  + KS++ D +L   K
Sbjct: 1121 DR-----THRIGQSRNVIAYRLLIKESIEEKIRQLQKQKSSLADDVLGEEK 1166


>gi|293379105|ref|ZP_06625256.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
 gi|292642246|gb|EFF60405.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
          Length = 705

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 479 VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 535

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
            ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 536 QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 595

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 596 AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 649

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I++ TI+E +    + K  +   ++  
Sbjct: 650 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 681


>gi|322517503|ref|ZP_08070375.1| Snf2 family protein [Streptococcus vestibularis ATCC 49124]
 gi|322123879|gb|EFX95442.1| Snf2 family protein [Streptococcus vestibularis ATCC 49124]
          Length = 1027

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 807  LAQLQQMQQGLI-SASDQEINRHKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 861

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 862  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQEVGISSYKLTGSTPSDSRQEMTKAFNQ 921

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G ++ V 
Sbjct: 922  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEQNVE 975

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 976  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1006


>gi|222152563|ref|YP_002561738.1| helicase [Streptococcus uberis 0140J]
 gi|222113374|emb|CAR41006.1| putative helicase [Streptococcus uberis 0140J]
          Length = 1029

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + E          K++ L  ++ 
Sbjct: 819  DRIKNASDADINRQKIEILSG---ITRLRQICDTPSLFTEYD----GDSGKLECLRTLLL 871

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   +K   +              ++     + +N G     
Sbjct: 872  QVKENGHRALIFSQFKGMLEIAEKELEEMGLNSYKITGSTPANERQEMTRAFNNGSKDAF 931

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+     Q I R       + G    V VY LI 
Sbjct: 932  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEMQAISR-----AHRIGQDDNVEVYRLIT 985

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L    TK  +   +L+ 
Sbjct: 986  RGTIEEKILALQETKRNLVTTVLDG 1010


>gi|194016601|ref|ZP_03055215.1| SNF2 family helicase [Bacillus pumilus ATCC 7061]
 gi|194012074|gb|EDW21642.1| SNF2 family helicase [Bacillus pumilus ATCC 7061]
          Length = 925

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE--KI 56
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  E     ++     K+
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAI-ILSMLGRLKQICDHPALYLKESGTDVKLLKRSLKM 752

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKA----------FPQGRT-LDKDPCTIQE 103
             L  +++  +      ++   +      +++           F  G     +    +  
Sbjct: 753 DKLAELLKAIHEQGESCLIFTQYIGMGNMIKQLAEKMFGEPVQFLNGSLSKQERDKMVDR 812

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +  +L     + G GLNL    N ++ +  WW+     Q  +R       + G KR
Sbjct: 813 FQKKEFNILILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKR 866

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ +I   TI+E + Q L TK T+ D ++ +
Sbjct: 867 FVHVHKMITTGTIEEKIDQMLETKQTLNDQIIQS 900


>gi|168209499|ref|ZP_02635124.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
 gi|170712417|gb|EDT24599.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 1067

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 866  DKINLFAYLTKLREICLDPSLVVPDYT---GESSKLTVVKEIVKDASESGKKILLFSQFT 922

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 923  SVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 981

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 982  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1036

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1037 RELIQSLMDG 1046


>gi|157694030|ref|YP_001488492.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
 gi|157682788|gb|ABV63932.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
          Length = 925

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE--KI 56
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  E     ++     K+
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAI-ILSMLGRLKQICDHPALYLKESGTDVKLLKRSLKM 752

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKA----------FPQGRT-LDKDPCTIQE 103
             L  +++  +      ++   +      +++           F  G     +    +  
Sbjct: 753 DKLAELLKAIHEQGESCLIFTQYIGMGNMIKQLAEKMFGEPVQFLNGSLSKQERDKMVDR 812

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +  +L     + G GLNL    N ++ +  WW+     Q  +R       + G KR
Sbjct: 813 FQKKEFNILILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKR 866

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ +I   TI+E + Q L TK T+ D ++ +
Sbjct: 867 FVHVHKMITTGTIEEKIDQMLETKQTLNDQIIQS 900


>gi|294619479|ref|ZP_06698922.1| Snf2 family protein [Enterococcus faecium E1679]
 gi|291594275|gb|EFF25706.1| Snf2 family protein [Enterococcus faecium E1679]
          Length = 1064

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|306827970|ref|ZP_07461237.1| Snf2 family protein [Streptococcus pyogenes ATCC 10782]
 gi|304429889|gb|EFM32931.1| Snf2 family protein [Streptococcus pyogenes ATCC 10782]
          Length = 1032

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGESGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|89897890|ref|YP_515000.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331262|dbj|BAE80855.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1206

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 87/204 (42%), Gaps = 18/204 (8%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              + + +   +  +      Q+ N  A+++     ++E    K +A   ++    A+   
Sbjct: 974  SPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESGKWEAFVRLLHDSLASGCK 1033

Query: 71   IIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            ++V   +   +  +         + A  QG++L++         + +  +      + G 
Sbjct: 1034 VVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGT 1093

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y L+ ++T++E + 
Sbjct: 1094 GINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIYKLMTEDTLEERIH 1147

Query: 182  QRLRTKSTIQDLLLNALKKETIHV 205
              +  K  + D +++      +H+
Sbjct: 1148 YLIEKKIRLLDKVISTQDSNILHM 1171


>gi|332035338|gb|EGI71840.1| Snf2 family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 155

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              II+   F S L  + +   +         G+T  +D   I E+  GK  +      +
Sbjct: 5   GRKIIIFSQFTSALDLIAQRLEEININFSMLTGQTRQRD-KVIDEFTSGKTSVFLISLKA 63

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    + ++ F  WW+    +Q  +R       + G    VFVY LI  N+I++
Sbjct: 64  GGTGLNLTQ-ADTVIHFDPWWNPAVEKQATDR-----AYRIGQTNPVFVYKLIMSNSIEQ 117

Query: 179 LVLQRLRTKSTIQDLLL 195
            V +  + K  + D L 
Sbjct: 118 KVFKMQQDKQALVDALF 134


>gi|56808747|ref|ZP_00366465.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            pyogenes M49 591]
 gi|209558846|ref|YP_002285318.1| Putative SNF helicase [Streptococcus pyogenes NZ131]
 gi|209540047|gb|ACI60623.1| Putative SNF helicase [Streptococcus pyogenes NZ131]
          Length = 1032

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGESGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|257880309|ref|ZP_05659962.1| Snf2 family protein [Enterococcus faecium 1,230,933]
 gi|257890968|ref|ZP_05670621.1| Snf2 family protein [Enterococcus faecium 1,231,410]
 gi|257894223|ref|ZP_05673876.1| Snf2 family protein [Enterococcus faecium 1,231,408]
 gi|257814537|gb|EEV43295.1| Snf2 family protein [Enterococcus faecium 1,230,933]
 gi|257827328|gb|EEV53954.1| Snf2 family protein [Enterococcus faecium 1,231,410]
 gi|257830602|gb|EEV57209.1| Snf2 family protein [Enterococcus faecium 1,231,408]
          Length = 1067

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 843  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 899

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 900  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 959

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 960  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1013

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1014 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1043


>gi|312864084|ref|ZP_07724320.1| SNF2 family N-terminal domain protein [Streptococcus vestibularis
            F0396]
 gi|311100497|gb|EFQ58704.1| SNF2 family N-terminal domain protein [Streptococcus vestibularis
            F0396]
          Length = 1031

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRHKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQEVGISSYKLTGSTPSDSRQEMTKAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G ++ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|21909786|ref|NP_664054.1| putative SNF helicase [Streptococcus pyogenes MGAS315]
 gi|28896521|ref|NP_802871.1| SNF helicase [Streptococcus pyogenes SSI-1]
 gi|21903971|gb|AAM78857.1| putative SNF helicase [Streptococcus pyogenes MGAS315]
 gi|28811775|dbj|BAC64704.1| putative SNF helicase [Streptococcus pyogenes SSI-1]
          Length = 1032

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGESGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|158261765|dbj|BAF83060.1| unnamed protein product [Homo sapiens]
          Length = 1307

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
              K        K+ AL+V++ +  +    +++       +  L++               
Sbjct: 1091 PGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1150

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++        N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1151 SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1209

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1210 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1260


>gi|50913662|ref|YP_059634.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10394]
 gi|50902736|gb|AAT86451.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10394]
          Length = 1032

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGESGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|282898428|ref|ZP_06306418.1| SNF2-related helicase [Raphidiopsis brookii D9]
 gi|281196594|gb|EFA71500.1| SNF2-related helicase [Raphidiopsis brookii D9]
          Length = 1427

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +         ++ ++  +          +     +   K++ L
Sbjct: 1208 YEALRRQAISKLNESDADPGRKHLQVLAEIMRLRRACCSPSLVMPD---INLSSSKLQLL 1264

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++    +               +   ++  +  G
Sbjct: 1265 GELLAELLENHHKALVFSQFVDHLHIIRNYLERKSIKYQYLDGSTPMAERKRSVDSFQAG 1324

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+     Q  +R       + G +R V +
Sbjct: 1325 DGDVFLISLKAGGTGLNLT-AADYVIHTDPWWNPAVEDQASDR-----AHRIGQERPVTI 1378

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI++ +++    K  + D LL  
Sbjct: 1379 YRLVAKDTIEDKIVELHHHKRDLADTLLEG 1408


>gi|168216008|ref|ZP_02641633.1| putative helicase [Clostridium perfringens NCTC 8239]
 gi|182381656|gb|EDT79135.1| putative helicase [Clostridium perfringens NCTC 8239]
          Length = 1065

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  S   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 864  DKINLFSYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILLFSQFT 920

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 921  SVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 979

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 980  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1034

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1035 RELIQSLMDG 1044


>gi|168206269|ref|ZP_02632274.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|170662244|gb|EDT14927.1| putative helicase [Clostridium perfringens E str. JGS1987]
          Length = 1067

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 866  DKINLFAYLTKLREICLDPSLVVPDYT---GESSKLTVVKEIVKDASESGKKILLFSQFT 922

Query: 79   SDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG-KIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +         G T  KD    ++ +NE   I +      + G GLNL  
Sbjct: 923  SVLKKIEEDFKKEDISYLYLDGGTYAKDRVEIVKNFNEDSNIKVFLISLKAGGVGLNLT- 981

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 982  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1036

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1037 RELIQSLMDG 1046


>gi|69247670|ref|ZP_00604446.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
            helicase, N-terminal [Enterococcus faecium DO]
 gi|257882164|ref|ZP_05661817.1| Snf2 family protein [Enterococcus faecium 1,231,502]
 gi|258614743|ref|ZP_05712513.1| Snf2 family protein [Enterococcus faecium DO]
 gi|260562387|ref|ZP_05832901.1| Snf2 family protein [Enterococcus faecium C68]
 gi|293559937|ref|ZP_06676447.1| Snf2 family protein [Enterococcus faecium E1162]
 gi|294621010|ref|ZP_06700206.1| Snf2 family protein [Enterococcus faecium U0317]
 gi|314937677|ref|ZP_07845002.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
 gi|314940927|ref|ZP_07847833.1| protein, SNF2 family [Enterococcus faecium TX0133C]
 gi|314948052|ref|ZP_07851454.1| protein, SNF2 family [Enterococcus faecium TX0082]
 gi|314952331|ref|ZP_07855341.1| protein, SNF2 family [Enterococcus faecium TX0133A]
 gi|314991945|ref|ZP_07857400.1| protein, SNF2 family [Enterococcus faecium TX0133B]
 gi|314995203|ref|ZP_07860317.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
 gi|68194742|gb|EAN09222.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
            helicase, N-terminal [Enterococcus faecium DO]
 gi|257817822|gb|EEV45150.1| Snf2 family protein [Enterococcus faecium 1,231,502]
 gi|260073311|gb|EEW61652.1| Snf2 family protein [Enterococcus faecium C68]
 gi|291599410|gb|EFF30431.1| Snf2 family protein [Enterococcus faecium U0317]
 gi|291606102|gb|EFF35526.1| Snf2 family protein [Enterococcus faecium E1162]
 gi|313590612|gb|EFR69457.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
 gi|313593529|gb|EFR72374.1| protein, SNF2 family [Enterococcus faecium TX0133B]
 gi|313595546|gb|EFR74391.1| protein, SNF2 family [Enterococcus faecium TX0133A]
 gi|313600285|gb|EFR79128.1| protein, SNF2 family [Enterococcus faecium TX0133C]
 gi|313642950|gb|EFS07530.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
 gi|313645468|gb|EFS10048.1| protein, SNF2 family [Enterococcus faecium TX0082]
          Length = 1064

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|295396955|ref|ZP_06807077.1| Snf2 family helicase [Aerococcus viridans ATCC 11563]
 gi|294974808|gb|EFG50513.1| Snf2 family helicase [Aerococcus viridans ATCC 11563]
          Length = 1051

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL-- 81
             +   +  Q+          K+       K +  ++++++A  +   ++V   F S L  
Sbjct: 853  LAGITRLRQICCHPRLV---KNDYTGQSGKFEYFKIMLKRAIQSGRKVLVFSQFTSMLDV 909

Query: 82   -------ARLQKAFPQGRTLDK-DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
                     +      G+T  K     + E+N G   +      + G G+NL  G + + 
Sbjct: 910  MSEYLAEEGIDYYMMTGQTNKKIRQEQVDEFNTGDKSVFLISLRAGGVGINLT-GADTIF 968

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    +Q I R       + G K  V V   I + TI++ + +    K  + + 
Sbjct: 969  LYDLWWNPAVEEQAIGR-----AHRIGQKNDVEVVRFITEGTIEQRIAELQEEKRYLFEQ 1023

Query: 194  LLN 196
            L +
Sbjct: 1024 LFD 1026


>gi|293568350|ref|ZP_06679673.1| Snf2 family protein [Enterococcus faecium E1071]
 gi|291588959|gb|EFF20784.1| Snf2 family protein [Enterococcus faecium E1071]
          Length = 1064

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|139474374|ref|YP_001129090.1| putative helicase [Streptococcus pyogenes str. Manfredo]
 gi|134272621|emb|CAM30888.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 1032

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGESGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|15615476|ref|NP_243779.1| SNF2 helicase [Bacillus halodurans C-125]
 gi|10175535|dbj|BAB06632.1| SNF2 helicase [Bacillus halodurans C-125]
          Length = 995

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 22/216 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y      +   L         +       K  Q+ N   ++ ++K+      EK + L
Sbjct: 771 ALYQAVVDNMVHQLGDVTHMERRALILKTLTKLKQICNHPAHFLKDKNVDAHQSEKWELL 830

Query: 60  EVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWN 105
             + E+       +++   F      +Q AF                   +     +  N
Sbjct: 831 LTLSEQIMDRQEKMLIFTQFKEMGHLMQDAFQSQIGTPIPFLHGSLSRQQRQEAVERFQN 890

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++P+      + G GLNL    N ++ +  WW+     Q  +R       + G    V
Sbjct: 891 DRELPIFILSLKAGGVGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQTADV 944

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V+ L+ + T++E + Q L +K  + + +L A + +
Sbjct: 945 TVHKLMTEGTLEERIHQMLESKQALAEQILTAGENQ 980


>gi|293553056|ref|ZP_06673698.1| Snf2 family protein [Enterococcus faecium E1039]
 gi|291602765|gb|EFF32975.1| Snf2 family protein [Enterococcus faecium E1039]
          Length = 1064

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|257885356|ref|ZP_05665009.1| Snf2 family protein [Enterococcus faecium 1,231,501]
 gi|257821212|gb|EEV48342.1| Snf2 family protein [Enterococcus faecium 1,231,501]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1    MKQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +    + + E+   D +          +   +  Q+      + E+    +    K++ +
Sbjct: 840  LAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLEQV 896

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEG 107
            + ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N G
Sbjct: 897  KDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNAG 956

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V V
Sbjct: 957  EKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVVEV 1010

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I++ TI+E +    + K  +   ++  
Sbjct: 1011 WRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|71902946|ref|YP_279749.1| phage-related DNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71802041|gb|AAX71394.1| phage-related DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 1032

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|134288423|ref|YP_001110586.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134133073|gb|ABO59783.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 948

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 19/199 (9%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           RE   D +G         S+ +K  Q+         E+  ++    K++ L  ++ +   
Sbjct: 722 REAVAD-RGLGRSTITVLSQILKLRQVCCDPRLLRLEQSEQKKPSAKLEYLMNMLRELLG 780

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +   ++V   F + +  +               G T + D    + +   ++PLL     
Sbjct: 781 DGRRVVVFSAFLTMVDIIADRLRDDQVEFEVITGETQNTDRA-KERFQNQEVPLLLCTLK 839

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G NL    + ++ +  WW+     Q ++R       + G  +A+FVY LI   +I+
Sbjct: 840 VGGVGHNLT-AADTVILYDPWWNPAAENQAMDR-----AHRIGQTKALFVYKLIMAGSIE 893

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E ++     K  +   +L+
Sbjct: 894 ERIVAMQERKDALMKAILD 912


>gi|71910102|ref|YP_281652.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS5005]
 gi|71852884|gb|AAZ50907.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS5005]
          Length = 1032

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|257888157|ref|ZP_05667810.1| Snf2 family protein [Enterococcus faecium 1,141,733]
 gi|257824211|gb|EEV51143.1| Snf2 family protein [Enterococcus faecium 1,141,733]
          Length = 1067

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 897

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
             ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ +I++ TI+E +    + K  +   ++  
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 1043


>gi|149200413|ref|ZP_01877429.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
 gi|149136482|gb|EDM24919.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
          Length = 1041

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 2    KQYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +       + Q ++ E      N  +   +  Q+       +E+  ++ +   KI 
Sbjct: 822  KIYREMHAYYSQEKQKDDKETPGGKGNMLAALTRLRQVVCHPYLVNED--YRHIESAKIN 879

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNE 106
             L   +E+  A+ A  ++   F   L  +++A            G T D+     +    
Sbjct: 880  LLISQLEQVFASGAKALIFSQFTQFLDLIEEAIQMNKWNYTRLDGSTKDRQVPVQEFNEN 939

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K         + G GLNL     + +    WW+     Q I+R       + G ++AV 
Sbjct: 940  EKCRFFLISLKAGGTGLNLTQAQYVYIM-DPWWNPAAESQAIDR-----AYRIGQEKAVS 993

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Y ++A++TI++ +LQ    KS +   ++ A
Sbjct: 994  AYRIVAKDTIEDKLLQLQAEKSQLVQDVVEA 1024


>gi|15674499|ref|NP_268673.1| putative SNF helicase [Streptococcus pyogenes M1 GAS]
 gi|13621600|gb|AAK33394.1| putative SNF helicase [Streptococcus pyogenes M1 GAS]
          Length = 1032

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|328543336|ref|YP_004303445.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
 gi|326413081|gb|ADZ70144.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 481

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y K + E+ C+++  + E     A  + +K  + +QLA        E    E    K 
Sbjct: 253 RLYDKMRDEMVCEIEAMSGEQYRAYASTALAKLTRLVQLACNPSLIFPE---AEGTPAKF 309

Query: 57  KALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-------DKDPCTIQEWNE 106
           +AL+ +IE         +I+  ++   +  L    P    +       ++         +
Sbjct: 310 EALDGVIEDILSVPGRKVILWSNYIRTIETLLARIPGAVAIYGGTPTSERQEIAASFQQD 369

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A+PA+ G G  L    +  ++ SL W  + + Q        R  + G    V 
Sbjct: 370 PDVRVLIANPAAAGTGFTLT-AASFTIYESLSWRYDHYAQ-----SQDRNHRIGQTEPVT 423

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              LIA +TI+E ++  L  KS +   LL
Sbjct: 424 YLRLIAADTIEEAIVVALERKSALARTLL 452


>gi|312885408|ref|ZP_07745049.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311302106|gb|EFQ79134.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 1110

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 19/205 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL- 59
             Y K  RE  C    + +     N      K  Q+ +  +    EK        KI  L 
Sbjct: 891  AYEKEFREYICATSNKELAKSPINVLRGLTKLRQICDSPMLLSGEKLP-GDESAKIATLM 949

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIP 110
            E I  K     I+V   F S L  ++K         A+  G T ++        N     
Sbjct: 950  EEITGKMANHKILVFSQFVSMLDLIKKELHQRNISFAYLTGSTRNRQKVVEDFQNNSATR 1009

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    + +     WW+     Q I+R       + G  + +    L
Sbjct: 1010 VFLISLKAGGTGLNLTE-ADYVYLVDPWWNPAVENQAIDR-----SHRIGQNKNIVAVRL 1063

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I   T++E +++   +K  + + L+
Sbjct: 1064 ICPGTVEEKMMKVQSSKRELVNDLI 1088


>gi|110800073|ref|YP_695594.1| putative helicase [Clostridium perfringens ATCC 13124]
 gi|110674720|gb|ABG83707.1| putative helicase [Clostridium perfringens ATCC 13124]
          Length = 1069

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 868  DKINLFAYLTKLREICLDPSLVVPDYT---GESSKLTVVKEIVKDASESGKKILLFSQFT 924

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 925  SVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 983

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 984  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1038

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1039 RELIQSLMDG 1048


>gi|308178567|ref|YP_003917973.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307746030|emb|CBT77002.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1071

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 22/206 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +++ + ++E+   +   +   F          QLA       E          K++ L  
Sbjct: 854  RRFQRVRQEVLGLVDDVDSNRFKILQSLTLLRQLALDPSLVGEGD----APSAKLEMLRE 909

Query: 62   IIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKI 109
            ++  A      I+V   F   L +         +   +  G T   K    I  ++  + 
Sbjct: 910  LMADAVSEGHKILVFSQFTGFLQKARQVAEELGIDHGYLDGATSGVKRKELIDGFSAEQF 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+ F    S G G+NL    +  +    WW+ +   Q I+R       + G  R V+VY 
Sbjct: 970  PVFFISLKSGGFGINLT-SADYCILLDPWWNPQAEAQAIDR-----AHRIGQTRPVYVYR 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+A++TI+  VL     K+ + + +L
Sbjct: 1024 LVAKDTIESKVLALQAKKTQLFNDVL 1049


>gi|168212253|ref|ZP_02637878.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170716039|gb|EDT28221.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 1067

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 866  DKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILLFSQFT 922

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 923  SVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 981

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A++TI+E ++     K
Sbjct: 982  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1036

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1037 RELIQSLMDG 1046


>gi|257896952|ref|ZP_05676605.1| Snf2 family protein [Enterococcus faecium Com12]
 gi|257833517|gb|EEV59938.1| Snf2 family protein [Enterococcus faecium Com12]
          Length = 1067

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 897

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
             ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ +I++ TI+E +    + K  +   ++  
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 1043


>gi|297625268|ref|YP_003687031.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296921033|emb|CBL55571.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1132

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLAR 83
             +   +  QL+      DE      +   KI  L   +          +V   F S L  
Sbjct: 941  LAALTRLRQLSLAPGLVDE--KMLNIGSAKIDTLVEHLRALAGENHRALVFSQFTSFLHL 998

Query: 84   LQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            ++           +  GRT  +D   +Q + +G          + G GL L     + V 
Sbjct: 999  VRDRLTTEGIEWEYLDGRTRHRDER-VQRFKDGNATAFLISLKAGGFGLTLTEADYVYVL 1057

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW+     Q I+R       + G  + V VY +++ NTI+E V+   + K  + D +
Sbjct: 1058 -DPWWNPAAENQAIDR-----THRIGQDKQVMVYRMVSTNTIEEKVVALQQRKRDLFDQV 1111

Query: 195  L 195
            +
Sbjct: 1112 V 1112


>gi|227552615|ref|ZP_03982664.1| Snf2 family helicase [Enterococcus faecium TX1330]
 gi|227178241|gb|EEI59213.1| Snf2 family helicase [Enterococcus faecium TX1330]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 894

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
             ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ +I++ TI+E +    + K  +   ++  
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|125625080|ref|YP_001033563.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493888|emb|CAL98882.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 1034

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 820  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 875

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 876  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 935

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 936  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 989

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I Q TI+E +++    K  +   +L  
Sbjct: 990  ITQGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|300071885|gb|ADJ61285.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1031

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 817  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 872

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 873  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 932

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 933  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 986

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I Q TI+E +++    K  +   +L  
Sbjct: 987  ITQGTIEEKIMEIQERKKDLIANVLEG 1013


>gi|158292419|ref|XP_313902.4| AGAP005035-PA [Anopheles gambiae str. PEST]
 gi|157016983|gb|EAA09385.4| AGAP005035-PA [Anopheles gambiae str. PEST]
          Length = 1608

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +       +++       +  L++               
Sbjct: 1116 PDKQTLVSDAGKLAVLDSLLARLKEQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1175

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++ N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1176 SKISERRDMVADFQNRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1234

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ +++N    K +T+ 
Sbjct: 1235 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVINGDNFKPDTLK 1285


>gi|326407578|gb|ADZ64649.1| DNA/RNA helicase, SWF/SNF family [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1034

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 875

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 876  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 935

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 936  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 989

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +++    K  +   +L  
Sbjct: 990  ITKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|281492645|ref|YP_003354625.1| SWF/SNF family DNA/RNA helicase [Lactococcus lactis subsp. lactis
            KF147]
 gi|281376309|gb|ADA65800.1| DNA/RNA helicase, SWF/SNF family [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1034

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 875

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 876  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 935

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 936  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 989

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +++    K  +   +L  
Sbjct: 990  ITKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|290956330|ref|YP_003487512.1| helicase [Streptomyces scabiei 87.22]
 gi|260645856|emb|CBG68947.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 968

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 26/219 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI--- 56
             Y    RE    ++  +  A             Q+ +    Y +E+      +  +   
Sbjct: 736 ALYEAVVRESLLAIETADGMARRGLVLKLLGALKQICDHPALYLKEEPATATGERFVGRS 795

Query: 57  -----KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
                    +    +     +V   +      +                G  + +    +
Sbjct: 796 GKLALLDELLDTLLSEDGSALVFTQYVGMARLITAHLAARAVPVELLHGGTPVTEREHMV 855

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 856 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 909

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V V+ LI + T+++ + + L +K  + D +L + + 
Sbjct: 910 TQPVQVHRLITEGTVEDRIAEMLESKRALSDAVLGSGEA 948


>gi|52082146|ref|YP_080937.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52787537|ref|YP_093366.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|319648023|ref|ZP_08002240.1| YwqA protein [Bacillus sp. BT1B_CT2]
 gi|52005357|gb|AAU25299.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52350039|gb|AAU42673.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|317389658|gb|EFV70468.1| YwqA protein [Bacillus sp. BT1B_CT2]
          Length = 921

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   K  Q+    A+Y  +           K++
Sbjct: 691 LYEQLVKDTFEHMSSLAGMQRKAL-ILSMLGKLKQICGHPALYLKETGSELLNGRSVKLE 749

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLD------KDPCTIQEW 104
            L  + +  + +    ++   +      +++   +      + L+      +    ++++
Sbjct: 750 KLLELTKTIRESDESCLIFTQYLGMGDMMKRLLEKSFGEPVKFLNGSLSKLERDKMVEQF 809

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P+L     + G GLNL    N ++ +  WW+     Q  +R       + G KR 
Sbjct: 810 QNKEFPILILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRF 863

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E + Q L +K ++ D ++ +
Sbjct: 864 VHVHKLITTGTIEEKIDQMLESKQSLNDQIIQS 896


>gi|15674024|ref|NP_268199.1| SWI/SNF family helicase [Lactococcus lactis subsp. lactis Il1403]
 gi|12725092|gb|AAK06140.1|AE006434_2 SWI/SNF family helicase [Lactococcus lactis subsp. lactis Il1403]
          Length = 1034

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 875

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 876  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 935

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 936  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 989

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +++    K  +   +L  
Sbjct: 990  ITKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|293571575|ref|ZP_06682597.1| Snf2 family protein [Enterococcus faecium E980]
 gi|291608381|gb|EFF37681.1| Snf2 family protein [Enterococcus faecium E980]
          Length = 1064

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 894

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
             ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ +I++ TI+E +    + K  +   ++  
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 1040


>gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbaspirillum seropedicae SmR1]
 gi|300076654|gb|ADJ66053.1| superfamily II helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPII 72
           L G  +   ++    +K  Q+        + +  K +   KI  L   +    A    I+
Sbjct: 614 LGGSQVTVMDA---LLKLRQVCCDPYLLKQGRMPKGLERAKIDWLCDTLPALVAEGRRIL 670

Query: 73  VAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHG 122
           V   F   L  +               G T        I  + + + PL+     + G G
Sbjct: 671 VFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLMLVSLKAGGVG 730

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + +V    WW+    +Q I R       + G +R VFVY L+ + +I+E +L+
Sbjct: 731 LNLT-AADTVVLVDPWWNPAVEEQAIAR-----AHRLGQQRQVFVYKLVIEGSIEERLLE 784

Query: 183 RLRTKSTIQDLLL 195
               KS + + +L
Sbjct: 785 LQARKSALAEGML 797


>gi|257899587|ref|ZP_05679240.1| Snf2 family protein [Enterococcus faecium Com15]
 gi|257837499|gb|EEV62573.1| Snf2 family protein [Enterococcus faecium Com15]
          Length = 1067

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIED---YQGGSGKLE 897

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN 105
             ++ ++  A  N   +++   F   L  LQ+   +         G T  +D    +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+    +Q   R       + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPAIEEQAAGR-----AHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ +I++ TI+E +    + K  +   ++  
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQG 1043


>gi|116627171|ref|YP_819790.1| SNF2 family DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116100448|gb|ABJ65594.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus LMD-9]
          Length = 1031

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + Q+ L      + I        S   +  Q+ +    + +          K+ +
Sbjct: 811  LAQLQQMQQGLI-SASDQEINRRKVEILSGITRLRQICDTPALFMD----YAGDSGKLDS 865

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L  ++ +   +   +++   F   L   ++   +              D      + +N+
Sbjct: 866  LRDLLSQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRHEMTRAFNQ 925

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G          + G GLNL  G + ++   LWW+     Q I R       + G K+ V 
Sbjct: 926  GSRDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKQNVE 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI + TI+E +L+    K  +   +L+ 
Sbjct: 980  VFRLITRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|116512988|ref|YP_811895.1| SNF2 family DNA/RNA helicase [Lactococcus lactis subsp. cremoris
            SK11]
 gi|116108642|gb|ABJ73782.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1034

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 6    KFQRELYCDLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVI 62
            +  ++   ++    +        +   +  Q+ N  A++ D+ K        K++ L  +
Sbjct: 820  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK----GSSGKLERLREL 875

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            + +   +    ++   F      ++K   +             +      +Q +N G   
Sbjct: 876  LAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRD 935

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    ++++   LWW+    +Q I R       + G K  V V  L
Sbjct: 936  AFLVSLKAGGVGLNLT-SADVVILVDLWWNPAVEEQAIAR-----AHRMGQKNTVEVIRL 989

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I Q TI+E +++    K  +   +L  
Sbjct: 990  ITQGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|223985797|ref|ZP_03635840.1| hypothetical protein HOLDEFILI_03146 [Holdemania filiformis DSM
            12042]
 gi|223962245|gb|EEF66714.1| hypothetical protein HOLDEFILI_03146 [Holdemania filiformis DSM
            12042]
          Length = 1073

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 25/186 (13%)

Query: 26   ASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
             +   +  Q+    G V+             K+ A   +IE A  +   I+V   F + L
Sbjct: 878  LAMLTRLRQICCDPGLVFDGYGGE-----RSKLTACMELIENAVESGKKILVFSQFTTIL 932

Query: 82   ARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             +L+    +               +    ++ +N  K P+      + G GLNL  G  I
Sbjct: 933  DKLRGECEKRGIGTYLLTGATPKQQRFDLMESFNRDKTPVFLISLKAGGTGLNLT-GAEI 991

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ +  WW+L    Q  +R       + G  R V V  LI + T++E + +  + K  + 
Sbjct: 992  VIHYDPWWNLSAENQATDR-----AYRIGQTRNVQVVKLIVEGTVEEKISKLQQQKQQLS 1046

Query: 192  DLLLNA 197
              ++  
Sbjct: 1047 QSVIEG 1052


>gi|46447008|ref|YP_008373.1| hypothetical protein pc1374 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400649|emb|CAF24098.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1161

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 2    KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y    RE    L   +G      +  +   +  Q+      +  +   +     K + 
Sbjct: 940  RSYAASAREELSQLVKKEGFERVQIHVLATLTRLKQICCHPAIF-AKDRPENGDSSKYEM 998

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEG 107
            L  +++    +    ++   +   L  +++   +         G + ++     +   + 
Sbjct: 999  LLELLQTLMESKHKTVIFSQYTRMLNIMREDLEKQGIRFEYLDGSSKNRLSIVKKFNEDP 1058

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             IP+      + G GLNL  G + ++ + +WW+     Q  +R+      + G K +V  
Sbjct: 1059 NIPIFLVSLKAGGSGLNL-VGADTVIHYDMWWNPAVENQATDRV-----HRLGQKNSVSS 1112

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI  NTI+E +L+    K  +   +++
Sbjct: 1113 YKLITLNTIEEKILELHNRKKGLVKEVVS 1141


>gi|326444829|ref|ZP_08219563.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 980

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
            Y    RE    +                    Q+ N  A Y  EE+        K++ L
Sbjct: 751 LYEAVVRETLDAVAAAQGMERRGLVVRLLTSLKQICNHPAQYLKEEEPVLGGRSGKLELL 810

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------DPCTIQEWNE 106
           + +++   A  A ++V   +    ARL ++    R +                 +  +  
Sbjct: 811 DELLDTIVAEGAGVLVFTQYVRM-ARLLESHLAARGIAAQLLHGGTPVPVRDEMVTRFQN 869

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V    WW+     Q  +R       + G  R V 
Sbjct: 870 GEVPVFLLSLKAAGTGLNLTRAEH-VVHLDRWWNPAVEAQATDR-----AYRIGQTRPVQ 923

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ LIA+ T+++ + + L  K  + D +L
Sbjct: 924 VHRLIAEGTVEDRIAELLARKRELADAVL 952


>gi|294816509|ref|ZP_06775152.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
 gi|294329108|gb|EFG10751.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1040

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             Y    RE    +                    Q+ N  A Y  EE+        K++ L
Sbjct: 811  LYEAVVRETLDAVAAAQGMERRGLVVRLLTSLKQICNHPAQYLKEEEPVLGGRSGKLELL 870

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------DPCTIQEWNE 106
            + +++   A  A ++V   +    ARL ++    R +                 +  +  
Sbjct: 871  DELLDTIVAEGAGVLVFTQYVRM-ARLLESHLAARGIAAQLLHGGTPVPVRDEMVTRFQN 929

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++P+      + G GLNL    + +V    WW+     Q  +R       + G  R V 
Sbjct: 930  GEVPVFLLSLKAAGTGLNLTRAEH-VVHLDRWWNPAVEAQATDR-----AYRIGQTRPVQ 983

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LIA+ T+++ + + L  K  + D +L
Sbjct: 984  VHRLIAEGTVEDRIAELLARKRELADAVL 1012


>gi|319938677|ref|ZP_08013041.1| Snf2 family protein [Streptococcus anginosus 1_2_62CV]
 gi|319811727|gb|EFW07993.1| Snf2 family protein [Streptococcus anginosus 1_2_62CV]
          Length = 1036

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 18/212 (8%)

Query: 1    MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Q  + Q  +    + E N       S  ++  Q+ +    + E+ H +    E +  L
Sbjct: 811  LAQLKQMQERVLASTEEELNRSKMEILSGLMRLRQICDTPALFMEDYHGESGKLESLLEL 870

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKI 109
               I +  +  +++   F   L  ++K   + +             +       +N G+ 
Sbjct: 871  LEQI-QTGSHRVLIFSQFRGMLDIIEKELKKMKMEAFKITGSTPAKERQEMTNAFNNGEG 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL  G + ++   LWW+     Q I R       + G +R V VY 
Sbjct: 930  DAFLISLKAGGVGLNLT-GADTVILVDLWWNPAVESQAIGR-----AHRMGQERNVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E + +   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKIQELQESKRHLVSTILDGTESR 1015


>gi|308275178|emb|CBX31775.1| hypothetical protein N47_N26000 [uncultured Desulfobacterium sp.]
          Length = 889

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 33/223 (14%)

Query: 1   MKQYHKFQRELYC-------DLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKH 47
           MK Y    R+          +L+   +E           S  +K  QL N    Y+    
Sbjct: 650 MKTYSDLSRKQVLLYNKVVEELKRAIVETEGIQRKGLVLSSIIKFKQLCNHPDQYNGTTE 709

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTL 94
           ++E    K   L  I E        ++V   F      L                 G  +
Sbjct: 710 YEEKDSGKFARLREICETIYEKREKVLVFTQFKEMTEPLSVFLESIFFRKGLILHGGVPV 769

Query: 95  DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++E+     IP +     + G GLNL    N ++ F  WW+     Q  +R   
Sbjct: 770 SRRKKIVEEFQSQSYIPFMVLSLKAGGVGLNLTE-ANHVIHFDRWWNPAVEDQATDR--- 825

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+  I + T++E +   L  K  + + +++
Sbjct: 826 --AFRIGQKKNVIVHKFITKGTVEEKIDNMLEEKKKLSNDVIS 866


>gi|262195025|ref|YP_003266234.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262078372|gb|ACY14341.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 985

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
            +    ++  Q A         +        K++ L   +    A     +V   +   L
Sbjct: 791 EALEALLRLRQAACHPALL-PGREA--DTSAKMEMLVDALSVVAAEGGKALVFSQWTGLL 847

Query: 82  ARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             ++              G T D+        +E    ++     + G GLNL    + +
Sbjct: 848 DLIEPHLRAAEISFNRLDGSTRDRGGVVAAFQDESGPTVMLISLKAGGTGLNLT-AADHV 906

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                WW+    +Q  +R       + G  R V VY L++++T++E +L     K  + +
Sbjct: 907 FLCDPWWNPAVEEQAADR-----AHRIGQDRPVMVYRLVSKDTVEERILALQEQKRALAE 961

Query: 193 LLL 195
             +
Sbjct: 962 AAI 964


>gi|322411161|gb|EFY02069.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1030

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 76/208 (36%), Gaps = 25/208 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + + + +     D+    IE  +      +  Q+ +    + +          K+++L  
Sbjct: 816  QMHDQIRTASDADINRRKIEILSG---ITRLRQICDTPSLFMDYD----GESGKLESLRT 868

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   ++                  ++     + +N G  
Sbjct: 869  LLLQIKENGHRALIFSQFRGMLDLAKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSK 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL  G + +V   LWW+     Q I R       + G +  V VY 
Sbjct: 929  DVFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEMQAISR-----AHRIGQEDNVEVYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI + TI+E +L+   +K  +   +L+ 
Sbjct: 983  LITRGTIEEKILELQESKRNLVTTVLDG 1010


>gi|226313275|ref|YP_002773169.1| hypothetical protein BBR47_36880 [Brevibacillus brevis NBRC 100599]
 gi|226096223|dbj|BAH44665.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 1090

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 21/182 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII-EKAN-AAPIIVAYHFNSDLAR 83
             +   +  Q+      + +E    +    K++ L  I+ E  N    +++   F   L  
Sbjct: 897  LAGLTRLRQICCHPALFVKE---YDGGSAKLEQLFEILGECKNAGKRVLLFSQFTEMLGM 953

Query: 84   LQKA---------FPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + +          +  G+T   +   +   +NEG+  L      + G GLN+  G + ++
Sbjct: 954  IGRELGYHGVPFFYLDGQTPVAERLDLCNRFNEGERDLFLMSLKAGGTGLNVT-GADTVI 1012

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+    QQ  +R       + G K  V V  L+A+ T++E + +  + K  + + 
Sbjct: 1013 LYDLWWNPAVEQQAADR-----AHRIGQKNVVQVIRLVAEGTVEEKMYELQQKKKNLIEE 1067

Query: 194  LL 195
            ++
Sbjct: 1068 II 1069


>gi|218900369|ref|YP_002448780.1| putative helicase [Bacillus cereus G9842]
 gi|218544351|gb|ACK96745.1| putative helicase [Bacillus cereus G9842]
          Length = 918

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|218233440|ref|YP_002370024.1| putative helicase [Bacillus cereus B4264]
 gi|218161397|gb|ACK61389.1| putative helicase [Bacillus cereus B4264]
          Length = 918

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|170726566|ref|YP_001760592.1| non-specific serine/threonine protein kinase [Shewanella woodyi ATCC
            51908]
 gi|169811913|gb|ACA86497.1| Non-specific serine/threonine protein kinase [Shewanella woodyi ATCC
            51908]
          Length = 1110

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 65/150 (43%), Gaps = 18/150 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEG 107
              L  ++E  +   I++   F S L  + +             G++ D+    +  +   
Sbjct: 946  DKLPGMLE--DGRRILIFSSFTSMLTLISELLESLSIPHVELTGKSRDR-ANLVNRFQNC 1002

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            ++P+      + G GLNL    ++++    WW+    QQ  +R       + G  ++VFV
Sbjct: 1003 EVPVFLISLKAGGAGLNLT-AADVVIHTDPWWNPAAEQQASDR-----AYRIGQDKSVFV 1056

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI ++T++E + +   +K  +   + ++
Sbjct: 1057 YKLICKDTVEERIQRLQESKYNLAQSIYDS 1086


>gi|326445095|ref|ZP_08219829.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 932

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 22/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWK-EVHDEKIKA 58
            Y    RE    +Q     A             Q+ N  A Y  E    +      K+  
Sbjct: 705 LYETVVRETMVQIQAAEGIARRGLVLKLLTSLRQICNHPAQYLKETASPRLAGRSGKLDL 764

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
            + ++    A    ++V   +      +     Q          G  +   P  +  +  
Sbjct: 765 FDDLLGVMLAEQQSVLVFTQYVEMAHLVSARLEQQNVNHRLLHGGTPVAARPALVDAFQR 824

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GL L    + ++F   WW+     Q  +R       + G +  V 
Sbjct: 825 GDFPVFLLSLRAAGTGLTLTRAQH-VIFLDQWWNPAVMDQAADR-----AYRIGTRHPVQ 878

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+ LI++ T++E + + L  K  + D +L+ +
Sbjct: 879 VHTLISEGTVEERIAELLAAKKDLADTVLSDV 910


>gi|296505669|ref|YP_003667369.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296326721|gb|ADH09649.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 918

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|206970363|ref|ZP_03231316.1| putative helicase [Bacillus cereus AH1134]
 gi|206734940|gb|EDZ52109.1| putative helicase [Bacillus cereus AH1134]
          Length = 918

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|297203431|ref|ZP_06920828.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
 gi|297148407|gb|EFH28976.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
          Length = 297

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVH------- 52
            Y    RE    ++     A             Q+ +  A+Y  EE              
Sbjct: 66  LYEAVVRESLLAIETAQGIARRGLVLKLLGALKQICDHPALYLKEEVPPTAGERLVARSG 125

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
              +    +    A     +V   +      +                G  + +    + 
Sbjct: 126 KLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAARAVPVDLLHGGTPVPERERMVD 185

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G IP+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G  
Sbjct: 186 RFQSGAIPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQT 239

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V V+ LI + T+++ + + L +K  + D +L
Sbjct: 240 QPVQVHRLITEGTVEDRIAEMLESKRALADAIL 272


>gi|228968365|ref|ZP_04129360.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791331|gb|EEM38938.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228923978|ref|ZP_04087255.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835777|gb|EEM81141.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|291234127|ref|XP_002737002.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5-like [Saccoglossus kowalevskii]
          Length = 1241

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
              Y    RE+   +     +               Q+ N    Y + K     H  K+K 
Sbjct: 1015 ALYESLVREMMQKIIECKEKGQRNKYIFKILTHLKQICNHPANYLDSKPSIVEHSGKMKM 1074

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----QGRTLD------KDPCTIQEWN 105
            L  ++E        +++   +   ++ + K        +  TL+      K    I  + 
Sbjct: 1075 LVELLEPILQQGEKVLIFSQYVRMISLMAKMLEHHFHIKPLTLEGSMSQIKRDKVIHAFK 1134

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             E    +      + G GLNL    N ++ + LW++     Q  +R       + G  ++
Sbjct: 1135 TEPHQQVFIISLKAGGTGLNLTE-ANHVIHYDLWYNPAVENQATDR-----AYRIGQSKS 1188

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFVY +I + T +E + + +  K  + DL +N
Sbjct: 1189 VFVYRMITEKTFEERIDEMIVKKKDLSDLSVN 1220


>gi|229112656|ref|ZP_04242192.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
 gi|228670788|gb|EEL26096.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQLVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228911082|ref|ZP_04074889.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
 gi|228848586|gb|EEM93433.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|302527381|ref|ZP_07279723.1| SNF2/RAD54 family helicase [Streptomyces sp. AA4]
 gi|302436276|gb|EFL08092.1| SNF2/RAD54 family helicase [Streptomyces sp. AA4]
          Length = 873

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 77/215 (35%), Gaps = 22/215 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY--DEEKHWKEVHDEKIK 57
             Y    REL  D+   +  A             Q+ N    +  +           K++
Sbjct: 645 ALYEATVRELMADIAASDGMARRGRVVKLLAALKQICNHPAQFLGEPADSTLAGRSGKLE 704

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
            L+ +++   A    ++V   +      L++              G  + +    +  + 
Sbjct: 705 LLDELLDTILAEDGAVLVFTQYVVMARLLERHLAARGVPSRLLHGGTPVARREELVCGFQ 764

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+      + G GL L    + +V +  WW+     Q  +R       + G  R V
Sbjct: 765 NGDVPVFLLSLKAAGTGLTLTR-ADHVVHYDRWWNPAVEDQATDR-----AYRIGQTRPV 818

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+ L+A+ T+++ +   LR K  + D +L + + 
Sbjct: 819 QVHRLVAEGTVEDRIAAMLREKRALADAVLASGEA 853


>gi|229050914|ref|ZP_04194465.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
 gi|228722459|gb|EEL73853.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229193493|ref|ZP_04320440.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
 gi|228590025|gb|EEK47897.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
          Length = 856

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|255534042|ref|YP_003094414.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
 gi|255347026|gb|ACU06352.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
          Length = 964

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 29  TVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NS------- 79
                QLAN  V  DE         +  +  L+ +++      +++   F          
Sbjct: 776 LTALRQLANHPVMIDETYTSDSGKFENVVHTLDNVLK--GGHKVLIFSQFVKHLNIFRQY 833

Query: 80  -DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +   +  A+  G T ++            + +      + G GLNL     + +    W
Sbjct: 834 LEEENISFAYLDGATKNRGEIVADFQKNTALKVFLISIKAGGVGLNLTEADYVFIL-DPW 892

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           W+    QQ I+R       + G  + VF+Y  IA++T++E +L     K  +   L+
Sbjct: 893 WNPAVEQQAIDR-----THRIGQDKKVFIYKFIAKDTVEEKILALQNRKKRLASSLI 944


>gi|301165746|emb|CBW25318.1| putative helicase [Bacteriovorax marinus SJ]
          Length = 1049

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 24/180 (13%)

Query: 32   CLQLANGAVYYDEEK--HWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQ 85
             LQL    ++       ++K +   KI+     LE IIE+      IV   F + L  +Q
Sbjct: 856  LLQLRQSCLWQSPTAGLNYKNIASTKIEFLVEQLEQIIEE--GHQTIVFSQFTTYLDLIQ 913

Query: 86   K----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                            +++ K    + ++  GK  +      + G GLNL     + +  
Sbjct: 914  NTLSDKHWRLSRIDGSQSIKKRQQQVDDFQSGKSDVFLISLKAGGVGLNLTAASYVFIM- 972

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              WW+     Q I+R       + G +  + VY  I +++++E VL+    K  +   LL
Sbjct: 973  DPWWNPAVESQAIDR-----AHRIGQQNTLTVYRPIIKDSVEEKVLKLQEMKKQLFKDLL 1027


>gi|229087719|ref|ZP_04219842.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
 gi|228695554|gb|EEL48416.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
          Length = 858

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANG-AVYYDEEKHW-KEVHDEKIKA 58
            Y +  ++   +++G   IE          K  Q+ N  A+Y  EE          K + 
Sbjct: 635 LYEQLVQDTLQNIEGLTGIERRGFILLMLNKLKQICNHPALYLKEETPIDIVQRSMKTQT 694

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      LQK   +                +    I+++ 
Sbjct: 695 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKAERDKMIEQFQ 754

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 755 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 808

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 809 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 840


>gi|229072708|ref|ZP_04205910.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
 gi|229181505|ref|ZP_04308833.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228602080|gb|EEK59573.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228710684|gb|EEL62657.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
          Length = 856

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229147777|ref|ZP_04276120.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
 gi|228635790|gb|EEK92277.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
          Length = 856

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228955491|ref|ZP_04117496.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804283|gb|EEM50897.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 856

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228961502|ref|ZP_04123113.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798216|gb|EEM45218.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 856

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|307192391|gb|EFN75626.1| Putative DNA helicase Ino80 [Harpegnathos saltator]
          Length = 1449

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +       +++       +  L++               
Sbjct: 944  PDKQTLVTDAGKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGS 1003

Query: 92   RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++ +   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1004 SKISDRRDMVADFQKRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1062

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1063 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1113


>gi|229082458|ref|ZP_04214921.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
 gi|228700890|gb|EEL53413.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
          Length = 856

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229153405|ref|ZP_04281583.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
 gi|228630009|gb|EEK86660.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
          Length = 856

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQKA-------FPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVPFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|326943035|gb|AEA18931.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 918

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKI 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|329116851|ref|ZP_08245568.1| SNF2 family N-terminal domain protein [Streptococcus parauberis NCFD
            2020]
 gi|326907256|gb|EGE54170.1| SNF2 family N-terminal domain protein [Streptococcus parauberis NCFD
            2020]
          Length = 1031

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+    IE  +      +  Q+ +    + +          K+ +L+ ++ 
Sbjct: 819  DRIRNSSDADINRRKIEILSG---ITRLRQICDTPSLFMDYD----GDSGKLDSLKTLLV 871

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   +K                  +      + +N G     
Sbjct: 872  QIKENGHRALIFSQFRGMLDIAEKEMEALGLTHYKITGSTPANDRQEMTRAFNNGSKDAF 931

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+     Q I R       + G K  V V+ LI 
Sbjct: 932  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEMQAISR-----AHRLGQKENVEVFRLIT 985

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+    K  +   +L+ 
Sbjct: 986  RGTIEEKILEMQEGKRNLVTTVLDG 1010


>gi|171059597|ref|YP_001791946.1| non-specific serine/threonine protein kinase [Leptothrix cholodnii
            SP-6]
 gi|170777042|gb|ACB35181.1| Non-specific serine/threonine protein kinase [Leptothrix cholodnii
            SP-6]
          Length = 1449

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 27/214 (12%)

Query: 2    KQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
              Y   +R      E      G      N  ++ ++  + A        +         K
Sbjct: 1223 AHYEALRRQALRDAERAMSADGAGQAHLNILAQLMRLRRAACDPRLVTPD---LVQPGAK 1279

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            + A   +  +  AN    +V   F   LA L++                   +    +  
Sbjct: 1280 VMAFGELAAELVANGHKALVFSQFVDFLALLREPLDAAGLRYQYLDGSTPSAERTRRVAA 1339

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G+         + G GLNL    + +V    WW+     Q   R       + G +R
Sbjct: 1340 FQAGEGDFFLISLKAGGFGLNLTV-ADYVVIADPWWNPAAEDQASGR-----AHRIGQQR 1393

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V VY L+ + T++E ++     K  + D +L A
Sbjct: 1394 PVTVYRLVNKGTLEEKIVALHADKRELADSVLEA 1427


>gi|260201211|ref|ZP_05768702.1| helicase helZ [Mycobacterium tuberculosis T46]
 gi|289443605|ref|ZP_06433349.1| helicase helZ [Mycobacterium tuberculosis T46]
 gi|289416524|gb|EFD13764.1| helicase helZ [Mycobacterium tuberculosis T46]
          Length = 1009

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNE 106
            I+  A    ++    F      L                    G    +    +  +  
Sbjct: 840 EIL--AEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 897

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R V
Sbjct: 898 GDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRRTV 951

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 952 QVRKFICTGTLEEKIDEMIEEKKALADLVV 981


>gi|296328143|ref|ZP_06870674.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154655|gb|EFG95441.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 25/193 (12%)

Query: 21  EAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYH 76
                 +   K  Q+      +Y D           KI A   +IEK+  N   I++   
Sbjct: 26  NKIEVLAMLTKLRQICIDPRSLYED-----VSSSSSKINAYIELIEKSIENNQKILLFSS 80

Query: 77  FNSDLAR---------LQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           F + L           +      G T   K    ++ +    +PL      + G GLNL 
Sbjct: 81  FTTVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQNEAVPLFLISLKAGGTGLNLT 140

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++++    WW++    Q  +R       + G +  V ++ LI +NTI+E +L     
Sbjct: 141 K-ASVVIHLDPWWNISVQNQATDR-----AHRIGQEDTVQLFNLITKNTIEEKILNLQSK 194

Query: 187 KSTIQDLLLNALK 199
           K  + D+ +   K
Sbjct: 195 KKELSDIFVENSK 207


>gi|327403655|ref|YP_004344493.1| SNF2-like protein [Fluviicola taffensis DSM 16823]
 gi|327319163|gb|AEA43655.1| SNF2-related protein [Fluviicola taffensis DSM 16823]
          Length = 1124

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y  ++ EL   L  E        + +  +   K  Q+ N     +E          KI
Sbjct: 903  RVYDVYKTELKEYLMSEPDFTDGQSSMHVLAGLTKLRQICNSPALINENGVSYGEQSAKI 962

Query: 57   KALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
            + L   IE       I+V   F   L  +++A  +         G+T  +          
Sbjct: 963  QELMEQIEDKKKHHKILVFSQFVGMLKLVERALEERSIPYSLLTGQTKKRKEVVNAFQEN 1022

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    + +     WW+     Q I+R       + G  + V 
Sbjct: 1023 EHIRVFLISLKAGGMGLNLTQ-ADYVYLLDPWWNPAVENQAIDR-----AYRIGQDKKVV 1076

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                I  NTI+E +L+  + K  +   L+
Sbjct: 1077 AVRFITPNTIEEKILELQKRKQELVGDLV 1105


>gi|306834168|ref|ZP_07467288.1| Snf2 family protein [Streptococcus bovis ATCC 700338]
 gi|304423741|gb|EFM26887.1| Snf2 family protein [Streptococcus bovis ATCC 700338]
          Length = 1026

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIK 57
            + Q  +  +E        +I        S   +  Q+    +++ D           K+ 
Sbjct: 808  LAQLRQM-QETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDYNGE-----SGKLD 861

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            +L  ++ +   N    ++   F   L   +K   +              +      + +N
Sbjct: 862  SLRTLLIQVKENGHRALIFSQFRGMLDIAEKEMEELGLTSYKITGSTPANARQEMTRAFN 921

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G          + G GLNL  G + ++   LWW+     Q I R       + G K  V
Sbjct: 922  NGSKDTFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQKANV 975

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI + TI+E +L+   +K  +   +L+ 
Sbjct: 976  EVYRLITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|195978760|ref|YP_002124004.1| SWF/SNF family helicase [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195975465|gb|ACG62991.1| SWF/SNF family helicase [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 1034

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK-----TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Y    R++   L     +  N +         +  Q+ +    + +     +    K+
Sbjct: 812  AIYLAQLRQMQERLSAATDDDINRSKLEILSGITRLRQICDTPSLFMD----YQGGSGKL 867

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
              L  ++ +   N    ++   F   LA +++   Q              +      + +
Sbjct: 868  DNLRTLLLQIKENGHRALLFSQFKGMLALVKQEIDQLGLSSYTITGSTPANDRQEMTRAF 927

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G          + G GLNL  G + ++   LWW+     Q I R       + G +  
Sbjct: 928  NNGSKDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEDN 981

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI + TI+E +L+    K  +   +L+ 
Sbjct: 982  VEVYRLITRGTIEEKMLELQENKRHLITTVLDG 1014


>gi|328856768|gb|EGG05888.1| hypothetical protein MELLADRAFT_36442 [Melampsora larici-populina
           98AG31]
          Length = 878

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 19/158 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           +   K+  L+ ++++       +++ +     +  +++                T+ +  
Sbjct: 656 LDSGKLARLDSLLQELKTGGHRVLIYFQMTRMIDLMEEYLSFRHYRYLRLDGSSTISERR 715

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + +W    +I +      + G G+NL    + ++F+   W+    QQ ++R       
Sbjct: 716 DMVMDWQTRPEIFIFLLSTRAGGLGINLT-AADTVIFYDCDWNPSNDQQAMDR-----AH 769

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G KR V VY LI   TIDE +L+  RTK T+QD ++
Sbjct: 770 RLGQKRQVTVYRLITSGTIDERILKLARTKKTVQDAVV 807


>gi|307947430|ref|ZP_07662764.1| helicase superfamily protein II [Roseibium sp. TrichSKD4]
 gi|307769572|gb|EFO28799.1| helicase superfamily protein II [Roseibium sp. TrichSKD4]
          Length = 906

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
            +  ++  Q+ N    + ++  W E    K+  L  I E   +    ++V   F   +  
Sbjct: 699 LATLMRLKQICNHPSQWLDDDDWNEADSGKLARLREISEVVASRQEKMLVFTQFQEVIEP 758

Query: 84  LQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
           L+                G  + K    +  + E + IP       + G GL L    + 
Sbjct: 759 LRTFLGSVFGKDGLVLHGGTAVAKRKKLVSAFQEDETIPFFILSLKAGGSGLTLT-AASH 817

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V F  WW+     Q  +R       + G K+ V V+ L+ + T++E +   + TK  + 
Sbjct: 818 VVHFDRWWNPAVENQATDR-----AYRIGQKKNVLVHKLLCRGTMEEKIDAMINTKQELA 872

Query: 192 DLLLNALK 199
           D LL+  K
Sbjct: 873 DALLSKTK 880


>gi|94989794|ref|YP_597894.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10270]
 gi|94543302|gb|ABF33350.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10270]
          Length = 1032

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    +       +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMN----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|30023277|ref|NP_834908.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|29898838|gb|AAP12109.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
          Length = 918

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 755 LIELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|19745454|ref|NP_606590.1| putative SNF helicase [Streptococcus pyogenes MGAS8232]
 gi|19747568|gb|AAL97089.1| putative SNF helicase [Streptococcus pyogenes MGAS8232]
          Length = 1031

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    +       +    K+ +L +++ 
Sbjct: 819  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMN----YQGKSGKLDSLRILLT 871

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 872  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 931

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 932  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 985

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 986  RGTIEEKILELQESKRNLVTTVLDG 1010


>gi|312130874|ref|YP_003998214.1| snf2-related protein [Leadbetterella byssophila DSM 17132]
 gi|311907420|gb|ADQ17861.1| SNF2-related protein [Leadbetterella byssophila DSM 17132]
          Length = 962

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDL------ 81
             K  Q+AN         H+     + I  L  I E  +  +  ++   F   L      
Sbjct: 774 LSKLRQIANHPAMVLP--HYSGGSGKGIDILSRIKEVVSEGSKTLIFSQFVKHLKFVAEG 831

Query: 82  ---ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               ++   +  G T ++     +  N  +  +      + G GLNL    N +     W
Sbjct: 832 LRAEKIPYLYLDGSTKNRMELVNRFQNSAEELIFLISLKAGGVGLNLTAAEN-VFLLDPW 890

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           W+     Q ++R       + G  + VF Y  I QNTI+E +++   TK  + D L+
Sbjct: 891 WNPAIEAQAVDR-----AHRIGQTKTVFSYKFITQNTIEEKIVELQNTKRQLFDELI 942


>gi|217962731|ref|YP_002341307.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|222098706|ref|YP_002532764.1| helicase, putative [Bacillus cereus Q1]
 gi|217063978|gb|ACJ78228.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|221242765|gb|ACM15475.1| helicase, putative [Bacillus cereus Q1]
          Length = 918

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|156743267|ref|YP_001433396.1| non-specific serine/threonine protein kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156234595|gb|ABU59378.1| Non-specific serine/threonine protein kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1066

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 20/180 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
             ++  Q+ N     D           K + L   +E  N      ++   F   L  +++
Sbjct: 878  LLRLRQICNHPRLVDAS---FRGSSGKFELLLETLETLNAEGHKALIFSQFVQMLHLIRE 934

Query: 87   AFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            A            G+T  +     +  N+  +P       + G GLNL    + ++    
Sbjct: 935  ALDTRSIRYAYLDGQTHQRQQEVDRFQNDETLPFFLISLKAGGVGLNLT-AADYVIHVDP 993

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+     Q  +R       + G ++ +FVY LI +N+++E +L   + K  +   L+ A
Sbjct: 994  WWNPAVEMQATDR-----THRIGQEKPIFVYKLITRNSVEEKILSLQQRKRELVAQLITA 1048


>gi|324329191|gb|ADY24451.1| helicase, putative [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K + +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKNIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|229164183|ref|ZP_04292118.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
 gi|228619300|gb|EEK76191.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
          Length = 840

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 617 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 676

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L++   +                +    I+++ 
Sbjct: 677 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEENFGQRVLFLNGSVPKKERDKMIEQFQ 736

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 737 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 790

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 791 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 822


>gi|206976890|ref|ZP_03237792.1| SNF2 family helicase [Bacillus cereus H3081.97]
 gi|206744856|gb|EDZ56261.1| SNF2 family helicase [Bacillus cereus H3081.97]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|23099744|ref|NP_693210.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22777974|dbj|BAC14245.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1051

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 79/184 (42%), Gaps = 21/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLAR 83
             +   +  Q+      +  + + K     K++ L+ +I+ A+     +++   F S L  
Sbjct: 854  LAGITRLRQICCHPSLFVRKYNDK---SAKLERLKQLIKDASRANKRLLIFSQFTSMLQL 910

Query: 84   L---------QKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +            +  G T  ++   I + +N+G   +      + G GLNL  G + ++
Sbjct: 911  IGKELRNKDILYYYIDGETPAEERVEICRAFNQGNREVCLISLKAGGTGLNL-VGADTVI 969

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + +WW+    +Q I+R       + G +  V V  L+++ TI+E + +  R K  + + 
Sbjct: 970  LYDVWWNPAVEEQAIDR-----AHRIGQQSEVTVIRLLSEGTIEEKMYELQRKKRELMNY 1024

Query: 194  LLNA 197
            L+N 
Sbjct: 1025 LVNG 1028


>gi|301056711|ref|YP_003794922.1| SNF2 family helicase [Bacillus anthracis CI]
 gi|300378880|gb|ADK07784.1| SNF2 family helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|94987919|ref|YP_596020.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS9429]
 gi|94991803|ref|YP_599902.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS2096]
 gi|94541427|gb|ABF31476.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS9429]
 gi|94545311|gb|ABF35358.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS2096]
          Length = 1032

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    + +     +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMD----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINL-PGADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|228975316|ref|ZP_04135873.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981952|ref|ZP_04142247.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228778064|gb|EEM26336.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228784449|gb|EEM32471.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 855

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKI 691

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|94993679|ref|YP_601777.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10750]
 gi|94547187|gb|ABF37233.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10750]
          Length = 1032

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +     D+  + IE  +      +  Q+ +    +       +    K+ +L +++ 
Sbjct: 820  DQIRNSSDVDISRQKIEILSG---ITRLRQICDTPSLFMN----YQGKSGKLDSLRILLT 872

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 873  QIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSKDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + ++   LWW+     Q I R       + G K  V VY LI 
Sbjct: 933  LISLKAGGVGINLT-GADTVILIDLWWNPAVEMQAISR-----AYRIGQKENVEVYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   +K  +   +L+ 
Sbjct: 987  RGTIEEKILELQESKRNLVTTVLDG 1011


>gi|225867216|ref|YP_002752594.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786779|gb|ACO26996.1| putative helicase [Bacillus cereus 03BB102]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|49481223|ref|YP_039235.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332779|gb|AAT63425.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|228903720|ref|ZP_04067840.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
 gi|228855988|gb|EEN00528.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
          Length = 856

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L++   +                     I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKNRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|52140319|ref|YP_086511.1| SNF2 family helicase [Bacillus cereus E33L]
 gi|51973788|gb|AAU15338.1| SNF2 family helicase [Bacillus cereus E33L]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|47569742|ref|ZP_00240415.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
 gi|47553593|gb|EAL11971.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|254724328|ref|ZP_05186112.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 918

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|229130493|ref|ZP_04259449.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
 gi|228652832|gb|EEL08714.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
          Length = 856

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + V +   K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVIIE--KANAAPIIVAYHFN---SDLARLQK-------AFPQGRTLDKDP-CTIQEWN 105
           L  +IE  K      ++   +    + L R+ +        F  G    KD    I+E+ 
Sbjct: 693 LIELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|196039505|ref|ZP_03106810.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196029665|gb|EDX68267.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 918

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|196036261|ref|ZP_03103659.1| putative helicase [Bacillus cereus W]
 gi|218906422|ref|YP_002454256.1| putative helicase [Bacillus cereus AH820]
 gi|195991053|gb|EDX55023.1| putative helicase [Bacillus cereus W]
 gi|218539910|gb|ACK92308.1| putative helicase [Bacillus cereus AH820]
          Length = 918

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|118480284|ref|YP_897435.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196045586|ref|ZP_03112816.1| putative helicase [Bacillus cereus 03BB108]
 gi|118419509|gb|ABK87928.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196023417|gb|EDX62094.1| putative helicase [Bacillus cereus 03BB108]
          Length = 918

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|30265272|ref|NP_847649.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47530804|ref|YP_022153.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188082|ref|YP_031335.1| helicase [Bacillus anthracis str. Sterne]
 gi|65317216|ref|ZP_00390175.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           anthracis str. A2012]
 gi|165870042|ref|ZP_02214699.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167636534|ref|ZP_02394830.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167641825|ref|ZP_02400066.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170689422|ref|ZP_02880614.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170708948|ref|ZP_02899380.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177654075|ref|ZP_02936085.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190567743|ref|ZP_03020655.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227818007|ref|YP_002818016.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229602583|ref|YP_002869461.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254686332|ref|ZP_05150191.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254735172|ref|ZP_05192881.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254737051|ref|ZP_05194756.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744378|ref|ZP_05202058.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755680|ref|ZP_05207713.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759588|ref|ZP_05211613.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30259950|gb|AAP29135.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47505952|gb|AAT34628.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182009|gb|AAT57385.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714365|gb|EDR19885.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167510237|gb|EDR85642.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167528066|gb|EDR90866.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170126113|gb|EDS95008.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170666649|gb|EDT17420.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172080958|gb|EDT66037.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190561159|gb|EDV15132.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003185|gb|ACP12928.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229266991|gb|ACQ48628.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 918

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|308175364|ref|YP_003922069.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307608228|emb|CBI44599.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 924

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++          ++   +      +++   +           +L K      ++ +
Sbjct: 753 KLLDLMAAIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|308067308|ref|YP_003868913.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
 gi|305856587|gb|ADM68375.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
          Length = 1041

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLAN--GAVYYDEEKHWKEVHDEKIKA 58
             Y     +L   L G+   A      +   K  Q+ +  G +        K  +  K++ 
Sbjct: 809  LYRGVVDQLLGTLDGQIGMARKGLVLSSLTKLKQICDHPGLIIPGRADSGKTENSGKMER 868

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
            L  ++E  + N    ++   + S    L     +           G    +    +  + 
Sbjct: 869  LLELVETIRENGESALIFTQYVSMGELLVSRLAKIFGEEPYFLHGGLAKTRRDEMVHNFQ 928

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +G+ P +      + G GLNL    + ++ +  WW+     Q  +R+      + G  R 
Sbjct: 929  QGEGPNIFVLSLRAGGVGLNLTRASH-VIHYDRWWNPAVENQATDRVF-----RIGQSRN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V+ LI Q T++E + + + +K  + + ++
Sbjct: 983  VQVHKLICQGTLEERIDELIESKKALSEQVV 1013


>gi|182625182|ref|ZP_02952958.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
 gi|177909641|gb|EDT72075.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
          Length = 1069

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++ A+     I++   F 
Sbjct: 868  DKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILLFSQFT 924

Query: 79   SDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L ++++ F +               D+     +   +  I +      + G GLNL  
Sbjct: 925  SVLQKIEEDFKKDDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLT- 983

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+     Q  +R       + G +  V V  L+A +TI+E ++     K
Sbjct: 984  SASVVIHFDPWWNPAVEDQATDR-----AHRFGQENKVEVIKLVANDTIEEKIVLMQEDK 1038

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1039 RELIQSLMDG 1048


>gi|42784409|ref|NP_981656.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42740341|gb|AAS44264.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 918

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|229141981|ref|ZP_04270506.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
 gi|228641270|gb|EEK97576.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229199361|ref|ZP_04326026.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
 gi|228584075|gb|EEK42228.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|154687749|ref|YP_001422910.1| YwqA [Bacillus amyloliquefaciens FZB42]
 gi|154353600|gb|ABS75679.1| YwqA [Bacillus amyloliquefaciens FZB42]
          Length = 924

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++   +      ++   +      +++   +           +L K      ++ +
Sbjct: 753 KLLDLMAVIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|229187464|ref|ZP_04314606.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
 gi|228595985|gb|EEK53663.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKNQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|328555338|gb|AEB25830.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens TA208]
 gi|328913706|gb|AEB65302.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens LL3]
          Length = 924

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++          ++   +      +++   +           +L K      ++ +
Sbjct: 753 KLLDLMAAIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|293400916|ref|ZP_06645061.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305942|gb|EFE47186.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1107

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 21/197 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN 78
            + F   +   +  Q+        E          K+     ++E  + N   +++   F 
Sbjct: 908  DKFAILAMLTRLRQICCEPRILYEN---ITTASSKLLYCLDLLETLRENHQRVLLFSSFT 964

Query: 79   SDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S L  L++   + R          T  +    +Q++  G   +      + G GLNL   
Sbjct: 965  SVLDILEEELIKRRFSYLKLTGNNTKQQRRDMVQQFQNGLTDVFLISLKAGGTGLNLT-A 1023

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++ F  WW++    Q  +R       + G  + V VY LI +++I+E +    + K 
Sbjct: 1024 ASAVIHFDPWWNVSAQNQATDR-----AYRIGQNQNVQVYKLIMKDSIEEKIQTLQKMKK 1078

Query: 189  TIQDLLLNALKKETIHV 205
             + D  +   +    H+
Sbjct: 1079 DLSDHFVEENEGSIYHM 1095


>gi|229094348|ref|ZP_04225422.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
 gi|228689026|gb|EEL42851.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|228936530|ref|ZP_04099326.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823118|gb|EEM68954.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229158809|ref|ZP_04286867.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
 gi|228624793|gb|EEK81562.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|228917853|ref|ZP_04081390.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841789|gb|EEM86899.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|149919778|ref|ZP_01908255.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149819385|gb|EDM78816.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1047

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +  Y++     + E+   +    IE       +   +  Q+       +  +        
Sbjct: 810  LALYNRILKAAKSEITTRVGEVGIEKSQMTILAALTRLRQVCTDPKLLNLPEGTTVPKST 869

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQE 103
            K++A   +I +A  +    +V   F S             +   +  G T ++D    + 
Sbjct: 870  KLEAFRALIGEAVGSGRKALVFSQFVSMQKILAGTLEELEIDYLWLHGGTTNRDELVQRF 929

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +   P+      + G GL L    + ++ +  WW+     Q  +R       + G ++
Sbjct: 930  QQKSGPPVFLISLKAGGAGLTLTE-ADTVIHYDPWWNPAVEDQATDR-----AHRIGQEK 983

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             V VY L+ ++T+++ +++    K  I +   +AL ++T
Sbjct: 984  PVMVYRLVVEHTVEQKMVELGAEKRKIAE---SALGRDT 1019


>gi|229124753|ref|ZP_04253933.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
 gi|228658730|gb|EEL14390.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|24648168|ref|NP_732413.1| Ino80 [Drosophila melanogaster]
 gi|75026769|sp|Q9VDY1|INO80_DROME RecName: Full=Putative DNA helicase Ino80; Short=dINO80
 gi|23171713|gb|AAF55658.2| Ino80 [Drosophila melanogaster]
          Length = 1638

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 1146 PDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1205

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1206 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1264

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1265 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1315


>gi|229175913|ref|ZP_04303410.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
 gi|228607507|gb|EEK64832.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
          Length = 855

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LI   T++E + + L  K ++ + ++
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVI 835


>gi|17862908|gb|AAL39931.1| SD02886p [Drosophila melanogaster]
          Length = 1638

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 1146 PDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1205

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1206 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1264

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1265 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1315


>gi|109898913|ref|YP_662168.1| SNF2-related [Pseudoalteromonas atlantica T6c]
 gi|109701194|gb|ABG41114.1| SNF2-related protein [Pseudoalteromonas atlantica T6c]
          Length = 1437

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 31/219 (14%)

Query: 8    QRELYCDLQGENIEAFNS--------------ASKTVKCLQLANGAVYYDEEKHWKEVHD 53
            +R+ Y  L+   I+  +                ++ VK  Q           +       
Sbjct: 1211 ERDFYEALRLNAIDNISQSGQQANAGEQRIRMLAELVKLRQACCNPKLV-MAETTIPSAK 1269

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQE 103
                   +   K N    ++   F   L  +++             G T  K     +  
Sbjct: 1270 LAALDELLEELKLNNHKALIFSQFVGHLQLIKQHIEAKGFSYQYLDGSTPQKQRQASVNA 1329

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G+  +      + G GLNL    + ++    WW+    +Q  +R       + G  R
Sbjct: 1330 FQRGEGDIFLISLKAGGSGLNLT-AADYVIHMDPWWNPAVEEQASDR-----AHRIGQLR 1383

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             V +Y L+ +NTI+E ++   + K  + D LL   +  T
Sbjct: 1384 PVTIYRLVTRNTIEEKIVSLHQHKRDLADTLLEGNEAAT 1422


>gi|228930248|ref|ZP_04093256.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829389|gb|EEM75018.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 855

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|228948966|ref|ZP_04111239.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810722|gb|EEM57070.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 855

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|255530347|ref|YP_003090719.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
 gi|255343331|gb|ACU02657.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
          Length = 1130

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 20/207 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT-----VKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    +++   ++G+  +    +S        +  Q+ N A    ++K +     +   
Sbjct: 910  VYEAAVQDIKEYIEGKAEDELAKSSMYVLQGITRLRQICNSATLLKDDKFYGNASSKMEV 969

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGK 108
             LE I  K+    I+V   F   L  ++           +  G+T ++        +  +
Sbjct: 970  LLEQIESKSPNHKILVFSQFVGMLDLIRAQLGERGIAHEYLTGQTRNRQQVVNSFQDNPE 1029

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +      + G GLNL    + +     WW+     Q I+R       + G ++ V   
Sbjct: 1030 IRVFLISLKAGGVGLNLTR-ADYVYLVDPWWNPAVENQAIDR-----TYRIGQEKNVVAV 1083

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI  +TI+E +++   TK  + D L+
Sbjct: 1084 RLICPDTIEEKIMKLQNTKRDLVDDLI 1110


>gi|288553478|ref|YP_003425413.1| SNF2 helicase [Bacillus pseudofirmus OF4]
 gi|288544638|gb|ADC48521.1| SNF2 helicase [Bacillus pseudofirmus OF4]
          Length = 998

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 20/191 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSD----LA 82
             K  Q+ N    + +          K   L  +IE  +     +++   +         
Sbjct: 795 LTKLKQICNHPAQFLKTDEVSRHDSRKWDELFALIEDIHNRNEKVLIFSQYKEMGRLIAE 854

Query: 83  RLQKAFPQGR-------TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            L++ + +         T  K    I+ + E  ++        + G GLNL    N ++ 
Sbjct: 855 ELERRYQKDVPFLHGSLTRPKRQEAIERFQEDPEVTAFVLSLKAGGVGLNLT-AANHVIH 913

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  WW+     Q  +R       + G  + V V+ L+   T++E + + L  K ++ D +
Sbjct: 914 YDRWWNPAVENQATDR-----AFRIGQTKDVTVHKLMTSGTLEERIDKMLTQKQSLADQV 968

Query: 195 LNALKKETIHV 205
           L A +++   +
Sbjct: 969 LQAGEQQVTEL 979


>gi|15896682|ref|NP_350031.1| DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
 gi|15026531|gb|AAK81371.1|AE007841_6 DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
          Length = 949

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y ++ + +   ++          S   +  Q+        E+ +       K+K    I
Sbjct: 731 VYAEYIKSVKAMMKNHKDGRVQIFSYLTRLRQICLDPSLILEDYN---GGSGKLKTALEI 787

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK-IPL 111
           I       +++   F S L ++++   +         G T  +D    + ++N    I +
Sbjct: 788 IRGHEGK-VLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKV 846

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    N+++ F  WW+     Q  +R       + G K  V V  L+
Sbjct: 847 FLISLKAGGTGLNLT-SANLVIHFDPWWNPAVENQATDR-----AHRIGQKNVVEVIKLV 900

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ TI+E ++     K  + D ++  
Sbjct: 901 AKGTIEEKIILLQEDKKELIDNVITG 926


>gi|328786874|ref|XP_393832.4| PREDICTED: putative DNA helicase Ino80-like [Apis mellifera]
          Length = 1636

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 27/179 (15%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVA--------------YHFNSDLARLQKA 87
             +K        K+  L+ ++ +       +++               YH      RL  +
Sbjct: 1089 PDKQTLVTDAGKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHKKHTFMRLDGS 1148

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +  D+            I +      + G G+NL    + ++F+   W+    QQ 
Sbjct: 1149 ---SKISDRRDMVADFQKRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQA 1204

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            ++R       + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1205 MDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1258


>gi|254393510|ref|ZP_05008646.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197707133|gb|EDY52945.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 480

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 22/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWK-EVHDEKIKA 58
            Y    RE    +Q     A             Q+ N  A Y  E    +      K+  
Sbjct: 253 LYETVVRETMVQIQAAEGIARRGLVLKLLTSLRQICNHPAQYLKETASPRLAGRSGKLDL 312

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
            + ++    A    ++V   +      +     Q          G  +   P  +  +  
Sbjct: 313 FDDLLGVMLAEQQSVLVFTQYVEMAHLVSARLEQQNVNHRLLHGGTPVAARPALVDAFQR 372

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GL L    + ++F   WW+     Q  +R       + G +  V 
Sbjct: 373 GDFPVFLLSLRAAGTGLTLTRAQH-VIFLDQWWNPAVMDQAADR-----AYRIGTRHPVQ 426

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+ LI++ T++E + + L  K  + D +L+ +
Sbjct: 427 VHTLISEGTVEERIAELLAAKKDLADTVLSDV 458


>gi|254444760|ref|ZP_05058236.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259068|gb|EDY83376.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 831

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 23/216 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           ++Y +   E       +   A     F + S   +  Q++         +   E   + +
Sbjct: 600 REYKRICEEGLARFGDDLGSALRTNRFATLSLLTRLRQVSCDPNLLPWMESSIEDSGKLM 659

Query: 57  KALEVIIEKAN-AAPIIVAYHFNSDLAR----LQKAFPQ-------GRTLDKDPCTIQEW 104
             LE +IE       +++   F   L R    ++++FP+       G T D++    +  
Sbjct: 660 VLLEKLIEVLGTGHKVVIFSQFVRFLKRARIMVEESFPELPIFELTGSTHDREAPVREFQ 719

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  +   +     +   G+ L +  + +     WW+     Q I+R+      + G    
Sbjct: 720 NTDQTAAMLVSLKAASVGITL-HTADYVFLLDPWWNPAVESQAIDRV-----HRIGQTNN 773

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           VFVY L+AQ TI+E +    + K  + D ++N  K 
Sbjct: 774 VFVYRLLAQGTIEEKIHHLQKEKRDLFDSIVNDSKA 809


>gi|156538236|ref|XP_001602268.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1536

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 74/191 (38%), Gaps = 21/191 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
               C  L   +     +K        K+  L+ ++ +       +++       +  L++
Sbjct: 1033 LAACRPLNGWSNITVPDKQTLVTDAGKLSVLDNLLRRLKEQGHRVLIYSQMTKMIDLLEE 1092

Query: 87   AF----------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                             +      + ++ +   I +      + G G+NL    + ++F+
Sbjct: 1093 YMYHRKHTFMRLDGSSKISDRRDMVADFQKRADIFVFLLSTRAGGLGINLT-AADTVIFY 1151

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS IQ +++
Sbjct: 1152 DSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVI 1206

Query: 196  NA--LKKETIH 204
            +    K +T+ 
Sbjct: 1207 SGGNFKPDTLK 1217


>gi|225867923|ref|YP_002743871.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225701199|emb|CAW98123.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 1034

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 1    MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Q  + Q  L      + +       S   +  Q+ +    + +     +    K+  L
Sbjct: 815  LAQLRQMQERLSAATDDDIHRSKLEILSGITRLRQICDTPSLFMD----YQGGSGKLDNL 870

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
              ++ +   N    ++   F   LA +++   Q              +      + +N G
Sbjct: 871  RTLLLQIKENGHRTLLFSQFKGMLALVKQEMDQLGLSSYTITGSTPANDRQEMTRAFNNG 930

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                      + G GLNL  G + ++   LWW+     Q I R       + G +  V V
Sbjct: 931  SKDAFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEMQAISR-----AHRIGQEDNVEV 984

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI + TI+E +L+    K  +   +L+ 
Sbjct: 985  YRLITRGTIEEKMLELQENKRHLITTVLDG 1014


>gi|290579916|ref|YP_003484308.1| putative SNF helicase [Streptococcus mutans NN2025]
 gi|254996815|dbj|BAH87416.1| putative SNF helicase [Streptococcus mutans NN2025]
          Length = 1030

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 18/159 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDP 98
                K+ +L  ++ +   N    ++   F   L   +K                  ++  
Sbjct: 858  DDSGKLASLRELLLQIKENGHRALIFSQFRDMLDLAEKEIEALGLTSYKMTGSTPANERQ 917

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 +N G          + G GLNL  G + +V   LWW+     Q I R       +
Sbjct: 918  EMTHAFNNGSKDTFLISLKAGGVGLNLT-GADTVVLIDLWWNPAIEMQAISR-----AHR 971

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G K  V VY +I + TI+E +L+   +K  +   +L+ 
Sbjct: 972  IGQKENVEVYRMITRGTIEEKILELQESKKNLVTTVLDG 1010


>gi|149924028|ref|ZP_01912411.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149815111|gb|EDM74664.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1158

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 25/209 (11%)

Query: 15   LQGENIEAFNSASK-----TVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
            L   +      A+        +  Q     A+    E         KI+ L +++ +A  
Sbjct: 883  LGAVDDRGVRGATLHILEALTRLRQACCHPALLPFPEAQAMVARSAKIELLVLLLREAIA 942

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGK-IPLLFAHP 116
                 +V   + S L  +  A  +         G T D+    +  W +    P+     
Sbjct: 943  GGHRSLVFSQWPSFLDHVSAALDEQTVAHLRLDGSTRDR-GAVLDRWQDPAGPPVFLIST 1001

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GL+L    + +     WW+     Q  +R       + G  R V VY L+A +T+
Sbjct: 1002 KAGGVGLDLT-AADHVFHLDPWWNPAAEDQATDR-----AHRIGQDRPVMVYKLVAADTV 1055

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++ +L+    K  +    ++  + E   +
Sbjct: 1056 EDKILELQARKRKLFQATVDTDRLEVAEL 1084


>gi|115375420|ref|ZP_01462681.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310821127|ref|YP_003953485.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367547|gb|EAU66521.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309394199|gb|ADO71658.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           R     L  E      +    ++  Q A  +     +         K++ L   +  A  
Sbjct: 775 RAEVVALLNEGGSVLKALEALLRLRQAACHSALVPGQ---HATSSSKVQTLVEALGTAVS 831

Query: 67  NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +V   + S L  ++              G T D+   T +  +    P++     
Sbjct: 832 EGHKALVFSQWTSLLDLIEPGLKGAGIAFERLDGTTADRGAVTTRFQSPEGAPVMLMSLK 891

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + +     WW+     Q  +R       + G +R V VY L++Q T++
Sbjct: 892 AGGTGLNLT-AADHVFLMDPWWNPAVEAQAADR-----AHRIGQERPVMVYRLVSQGTVE 945

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +L     K  I +  L+
Sbjct: 946 ERILGLQEKKRAIFEAALS 964


>gi|229032866|ref|ZP_04188821.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
 gi|228728411|gb|EEL79432.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
          Length = 855

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LI   T++E + + L  K ++ + ++
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVI 835


>gi|310640034|ref|YP_003944792.1| snf2-like protein [Paenibacillus polymyxa SC2]
 gi|309244984|gb|ADO54551.1| SNF2-like protein [Paenibacillus polymyxa SC2]
          Length = 1041

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLAN--GAVYYDEEKHWKEVHDEKIKA 58
             Y     +L   L G+   A      +   K  Q+ +  G +        K  +  K++ 
Sbjct: 809  LYRGVVDQLLGTLDGQVGMARKGLVLSSLTKLKQICDHPGLIIPGRADSSKTENSGKMER 868

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
            L  ++E  + N    ++   + S    L     +           G    +    +  + 
Sbjct: 869  LLELVETIRENNESALIFTQYVSMGELLVSRLAKILGEEPYFLHGGLAKTRRDEMVHNFQ 928

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +GK P +      + G GLNL    + ++ +  WW+     Q  +R+      + G  R 
Sbjct: 929  QGKGPNIFVLSLRAGGVGLNLTRASH-VIHYDRWWNPAVENQATDRVF-----RIGQSRN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V+ LI Q T++E + + + +K  + + ++
Sbjct: 983  VQVHKLICQGTLEERIDELIESKKALSEQVV 1013


>gi|24380105|ref|NP_722060.1| putative SNF helicase [Streptococcus mutans UA159]
 gi|24378101|gb|AAN59366.1|AE015001_11 putative SNF helicase [Streptococcus mutans UA159]
          Length = 1030

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 18/159 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDP 98
                K+ +L  ++ +   N    ++   F   L   +K                  ++  
Sbjct: 858  DDSGKLASLRELLLQIKENGHRALIFSQFRDMLDLAEKEIEALGLTSYKMTGSTPANERQ 917

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 +N G          + G GLNL  G + +V   LWW+     Q I R       +
Sbjct: 918  EMTHAFNNGSKDTFLISLKAGGVGLNLT-GADTVVLIDLWWNPAIEMQAISR-----AHR 971

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G K  V VY +I + TI+E +L+   +K  +   +L+ 
Sbjct: 972  IGQKENVEVYRMITRGTIEEKILELQESKKNLVTTVLDG 1010


>gi|55963369|emb|CAI11899.1| novel protein containing an SNF2 family N-terminal domain and a
            Helicase conserved C-terminal domain [Danio rerio]
          Length = 1582

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             +K        K+  L++++ +  +    +++       +  L++     +         
Sbjct: 1122 PDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1181

Query: 94   --LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1182 SKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1240

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1241 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1291


>gi|153006894|ref|YP_001381219.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030467|gb|ABS28235.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 931

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
            +  ++  Q+ N    +  +  +      K   L  I +   +     +V   F      
Sbjct: 723 LAYLLRLKQICNHPSQWLGDGEYGPGASGKFARLAEIADTVASRQEKALVFTQFREMTEP 782

Query: 84  LQKAFPQ------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           L +                 R  D+     +   +  +P L     + G GLNL    + 
Sbjct: 783 LARFLAGPFGRPGLVLHGHTRVKDRAALVRRFQEDETLPFLVLSLKAGGTGLNLT-AASH 841

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V F  WW+     Q  +R       + G KR V V+ L+ + T++E +   L  K  + 
Sbjct: 842 VVHFDRWWNPAVENQATDR-----AFRIGQKRPVLVHKLVCRGTVEERIDSMLEDKRRLS 896

Query: 192 DLLLNA 197
             LL  
Sbjct: 897 QELLEG 902


>gi|325510846|gb|ADZ22482.1| NA/RNA helicase, SNF2 [Clostridium acetobutylicum EA 2018]
          Length = 966

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y ++ + +   ++          S   +  Q+        E+ +       K+K    I
Sbjct: 748 VYAEYIKSVKAMMKNHKDGRVQIFSYLTRLRQICLDPSLILEDYN---GGSGKLKTALEI 804

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK-IPL 111
           I       +++   F S L ++++   +         G T  +D    + ++N    I +
Sbjct: 805 IRGHEGK-VLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKV 863

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    N+++ F  WW+     Q  +R       + G K  V V  L+
Sbjct: 864 FLISLKAGGTGLNLT-SANLVIHFDPWWNPAVENQATDR-----AHRIGQKNVVEVIKLV 917

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ TI+E ++     K  + D ++  
Sbjct: 918 AKGTIEEKIILLQEDKKELIDNVITG 943


>gi|296436088|gb|ADH18262.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9768]
 gi|296437949|gb|ADH20110.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/11074]
 gi|297140449|gb|ADH97207.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9301]
          Length = 1199

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ N  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  +G++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|255311373|ref|ZP_05353943.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276]
 gi|255317674|ref|ZP_05358920.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276s]
          Length = 1199

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ N  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  +G++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|237804906|ref|YP_002889060.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
 gi|231273206|emb|CAX10119.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
          Length = 1199

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ N  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  +G++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|76789292|ref|YP_328378.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|237802984|ref|YP_002888178.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
 gi|76167822|gb|AAX50830.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|231274218|emb|CAX11012.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
          Length = 1199

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ N  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  +G++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|88602942|ref|YP_503120.1| SNF2-like protein [Methanospirillum hungatei JF-1]
 gi|88188404|gb|ABD41401.1| SNF2-related protein [Methanospirillum hungatei JF-1]
          Length = 1048

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++  +L      A   A  +   +  Q+ N       +K  K     K+  L 
Sbjct: 815  LYQAVVLDMAKNLDKVEGIARKGAILAAITRLKQICNHPGRVGRDKTIKAERSGKVSRLL 874

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG 107
             +IE+  +     ++   + +    L     +                K    I+E+   
Sbjct: 875  EMIEEITSEGDSALIFSQYATFAEELAGMIEKQGDTPVLLLTGSTPRKKREQMIEEFQAS 934

Query: 108  KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+       + G GLNL    + +     WW+     Q  +R       + G KR V 
Sbjct: 935  TTPIIFVISLKAGGTGLNLTKATH-VFHVDRWWNPAVEDQATDR-----TYRIGQKRNVQ 988

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ +I   T++E +    + K T+   +L
Sbjct: 989  VHLMITAGTLEERIDLINQEKRTLAKEVL 1017


>gi|257064055|ref|YP_003143727.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256791708|gb|ACV22378.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 907

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKAL 59
           + YH  ++ L   L   ++E     ++  +  Q+    G VY D +         K+ A+
Sbjct: 691 RLYHAREQRLQSKLAERDMEDIQLLAEITRLRQVCCDPGLVYEDYDGG-----SGKLDAI 745

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCT-----IQEWNEG 107
             ++E+A    +  ++   + S L  + K   +        +   P +     +  +N+ 
Sbjct: 746 VNLVEQAREVGSKTVIFSQWVSFLESISKRLNRNGIAHDWIIGDTPASDRVGIVDAFNKD 805

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+L     + G GLN+  G +  +    +W      Q   R+      + G   +VFV
Sbjct: 806 ETPVLLVSMRAGGVGLNMT-GASTAIIADPFWHEAAQTQAYSRLW-----RLGQDSSVFV 859

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y +IA+NTI++ +L     K  + + +++A
Sbjct: 860 YQIIAENTIEDRILGLQHKKHDLGESVISA 889


>gi|251778971|ref|ZP_04821891.1| hypothetical ATP-dependent helicase [Clostridium botulinum E1 str.
            'BoNT E Beluga']
 gi|243083286|gb|EES49176.1| hypothetical ATP-dependent helicase [Clostridium botulinum E1 str.
            'BoNT E Beluga']
          Length = 1055

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 29/220 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   L+   I++ N      +   +  QL        E+    E    KI 
Sbjct: 832  KMYKMYVKDIQDKLK--QIDSRNNKIAIFAYLTRLRQLCLDPSIIVED---YEGGSGKIN 886

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI--QEW 104
              + +I+K+  N   I++   F S L          ++   +  G T  K+   +  +  
Sbjct: 887  VAKELIKKSIKNNHKILLFSQFTSLLNKVCDELKSEQIFYLYLDGSTPSKERIRLAHEFN 946

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G GLNL    ++++ F  WW+     Q  +R       + G K  
Sbjct: 947  NNEDIKIFLISLKAGGTGLNLT-SADMVIHFDPWWNPAIEDQATDR-----AHRIGQKNV 1000

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
            V V  LI + +I+E +L     K  + + ++   LK++ +
Sbjct: 1001 VRVIKLITKESIEEKILLLQEDKKALIEDVITGELKEDGL 1040


>gi|228999987|ref|ZP_04159559.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
 gi|228759929|gb|EEM08903.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
          Length = 867

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANG-AVYYDEEK-HWKEVHDEKIKA 58
            Y +  ++   +++G   IE          K  Q+ N  A+Y  EE          K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      LQK   +                +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|228994365|ref|ZP_04154249.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
 gi|228765382|gb|EEM14052.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
          Length = 867

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANG-AVYYDEEK-HWKEVHDEKIKA 58
            Y +  ++   +++G   IE          K  Q+ N  A+Y  EE          K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      LQK   +                +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|229008128|ref|ZP_04165659.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
 gi|228753134|gb|EEM02641.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
          Length = 867

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANG-AVYYDEEK-HWKEVHDEKIKA 58
            Y +  ++   +++G   IE          K  Q+ N  A+Y  EE          K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  +IE  K      ++   +      LQK   +                +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|78222214|ref|YP_383961.1| SNF2-related:helicase-like:Zinc finger, SWIM-type [Geobacter
            metallireducens GS-15]
 gi|78193469|gb|ABB31236.1| SNF2-related:Helicase-like:Zinc finger, SWIM-type [Geobacter
            metallireducens GS-15]
          Length = 1142

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 25   SASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            + +  ++  QL     +   + +      +  ++ LE +  +     ++V   F S L  
Sbjct: 947  ALTAILRLRQLCLSPRLLIADSREPSPKVEFLVEQLEELFTE--GHSVLVFSQFTSFLDI 1004

Query: 84   LQ----------KAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNIL 132
            ++                  + +    +  + +G  P +      + G GLNL      +
Sbjct: 1005 VEGELSRRGVHYYRLDGSTPVPERKRLVTAFQKGDEPSVFLLSLKAGGKGLNLTR-ATYV 1063

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 WW+     Q  +R       + G  R V +  L+ ++TI+E +++  + K  +  
Sbjct: 1064 FHLDPWWNPAVENQASDR-----AHRIGQTRQVTITRLVMRHTIEEKMMELKKRKLKLYH 1118

Query: 193  LLLN 196
             LL 
Sbjct: 1119 ALLE 1122


>gi|307189408|gb|EFN73818.1| Putative DNA helicase Ino80 [Camponotus floridanus]
          Length = 1624

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +       +++       +  L++               
Sbjct: 1068 PDKQTLVTDAGKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGS 1127

Query: 92   RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++ +   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1128 SKISDRRDMVADFQKRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1186

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1187 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1237


>gi|113676533|ref|NP_001038584.1| INO80 complex homolog 1 [Danio rerio]
 gi|56207300|emb|CAI20655.1| novel protein similar to H.sapiens INOC1, INO80 complex homolog 1 (S.
            cerevisiae) (INOC1) [Danio rerio]
          Length = 1552

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
             +K        K+  L++++ +  +    +++       +  L++     +         
Sbjct: 1089 PDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGS 1148

Query: 94   --LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1149 SKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1207

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 1208 -----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1258


>gi|307276930|ref|ZP_07558040.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|306506353|gb|EFM75513.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|315143788|gb|EFT87804.1| protein, SNF2 family [Enterococcus faecalis TX2141]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|257416863|ref|ZP_05593857.1| Snf2 family protein [Enterococcus faecalis AR01/DG]
 gi|257158691|gb|EEU88651.1| Snf2 family protein [Enterococcus faecalis ARO1/DG]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|282890240|ref|ZP_06298770.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499897|gb|EFB42186.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 883

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 18/201 (8%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAP 70
            +L G +          ++  Q+    +    ++    V   K+  L   +E        
Sbjct: 678 VELDGISKHRMEVLEAILRLRQICCHPLLVTAQEGSF-VASAKLDVLMQDLETLAEEGKK 736

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +V   F S L  + K F +         G T +++    Q   +  IP       + G 
Sbjct: 737 ALVYSQFTSMLGLIAKEFQKRGWNFVYLDGSTHNREKVVTQFQEDASIPFFLISLKAGGV 796

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    + +  F  WW+     Q I+R       + G +  V    LIA  +I+E + 
Sbjct: 797 GLNLT-SADYVYLFDPWWNEAIENQAIDR-----AHRIGRQDTVIAKRLIAIESIEEKIQ 850

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           +    K  + + L +    +T
Sbjct: 851 KLKENKRQLIESLFDETYGQT 871


>gi|256616806|ref|ZP_05473652.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
 gi|256596333|gb|EEU15509.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|227519520|ref|ZP_03949569.1| Snf2 family helicase [Enterococcus faecalis TX0104]
 gi|227073045|gb|EEI11008.1| Snf2 family helicase [Enterococcus faecalis TX0104]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|330443940|ref|YP_004376926.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
 gi|328807050|gb|AEB41223.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
          Length = 1117

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 8    QRELYCDLQGENIEAF-NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++     L+ E    F +  +      Q+ +  AV++ + + +   H  K      +++ 
Sbjct: 889  EKSQIQQLETEETTNFLHIFALLNHLKQICDHPAVFFKKPEEYHHHHSGKWNVFVKLLQD 948

Query: 66   --ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFA 114
              A+   ++V   +   +  + +            QG++L++     +   +    +   
Sbjct: 949  SLASGYKVVVFSQYIHMIQIITQYLEEIGIKYASIQGKSLNRKEEIERFSTDPTCRVFVG 1008

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL   GNI++ +  WW+  +  Q ++R+      + G K  VF+Y LI +N
Sbjct: 1009 SLLAAGTGINLT-AGNIVIMYDRWWNPAKENQALDRV-----HRFGQKNTVFIYKLITEN 1062

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            T++E +   +  K  + D ++       +H+
Sbjct: 1063 TLEERIHYLIEKKIHLLDKVIVTQDSNILHM 1093


>gi|256957920|ref|ZP_05562091.1| Snf2 family protein [Enterococcus faecalis DS5]
 gi|256948416|gb|EEU65048.1| Snf2 family protein [Enterococcus faecalis DS5]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|315174973|gb|EFU18990.1| protein, SNF2 family [Enterococcus faecalis TX1346]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|255974902|ref|ZP_05425488.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|307278760|ref|ZP_07559826.1| protein, SNF2 family [Enterococcus faecalis TX0860]
 gi|255967774|gb|EET98396.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|306504566|gb|EFM73770.1| protein, SNF2 family [Enterococcus faecalis TX0860]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|257087662|ref|ZP_05582023.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300861266|ref|ZP_07107353.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|307288690|ref|ZP_07568670.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|256995692|gb|EEU82994.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300850305|gb|EFK78055.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|306500356|gb|EFM69693.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|315025539|gb|EFT37471.1| protein, SNF2 family [Enterococcus faecalis TX2137]
 gi|315035196|gb|EFT47128.1| protein, SNF2 family [Enterococcus faecalis TX0027]
 gi|315165356|gb|EFU09373.1| protein, SNF2 family [Enterococcus faecalis TX1302]
          Length = 1065

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|315168675|gb|EFU12692.1| protein, SNF2 family [Enterococcus faecalis TX1341]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|166154770|ref|YP_001654888.1| helicase [Chlamydia trachomatis 434/Bu]
 gi|166155645|ref|YP_001653900.1| helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336044|ref|ZP_07224288.1| helicase [Chlamydia trachomatis L2tet1]
 gi|165930758|emb|CAP04255.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis 434/Bu]
 gi|165931633|emb|CAP07209.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1199

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 960  LEKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|315162049|gb|EFU06066.1| protein, SNF2 family [Enterococcus faecalis TX0645]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|257079857|ref|ZP_05574218.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294780417|ref|ZP_06745783.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|307269625|ref|ZP_07550961.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|256987887|gb|EEU75189.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294452517|gb|EFG20953.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|306514042|gb|EFM82627.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|329570678|gb|EGG52395.1| protein, SNF2 family [Enterococcus faecalis TX1467]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|255971908|ref|ZP_05422494.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|312953715|ref|ZP_07772550.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|255962926|gb|EET95402.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|295113640|emb|CBL32277.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterococcus sp. 7L76]
 gi|310628362|gb|EFQ11645.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|315149934|gb|EFT93950.1| protein, SNF2 family [Enterococcus faecalis TX0012]
 gi|315151814|gb|EFT95830.1| protein, SNF2 family [Enterococcus faecalis TX0031]
 gi|315159334|gb|EFU03351.1| protein, SNF2 family [Enterococcus faecalis TX0312]
 gi|323481616|gb|ADX81055.1| SNF2-type helicase [Enterococcus faecalis 62]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|66801511|ref|XP_629681.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60463108|gb|EAL61303.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2129

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K++ L+ +++        +++   F   +  L+                  LD    
Sbjct: 1765 DSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRD 1824

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++  +  I        +CG G+NL    + ++F+   W+    +Q        R  +
Sbjct: 1825 MVDDFQSDPSIFAFLLSTRACGIGINLT-SADTVIFYDSDWNPTVDEQA-----QDRAHR 1878

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G  R V VY LI +NTI+E +L+R + K  IQ +++   K E
Sbjct: 1879 LGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFE 1921


>gi|229549191|ref|ZP_04437916.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
 gi|229305428|gb|EEN71424.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|327535910|gb|AEA94744.1| Snf2 family protein [Enterococcus faecalis OG1RF]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|315170383|gb|EFU14400.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|257090879|ref|ZP_05585240.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312902516|ref|ZP_07761722.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|256999691|gb|EEU86211.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310634186|gb|EFQ17469.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|315579675|gb|EFU91866.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|256853990|ref|ZP_05559355.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|307290304|ref|ZP_07570220.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|256710933|gb|EEU25976.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|306498725|gb|EFM68226.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|315030488|gb|EFT42420.1| protein, SNF2 family [Enterococcus faecalis TX4000]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|229544926|ref|ZP_04433651.1| Snf2 family helicase [Enterococcus faecalis TX1322]
 gi|229309818|gb|EEN75805.1| Snf2 family helicase [Enterococcus faecalis TX1322]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|29377168|ref|NP_816322.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227554179|ref|ZP_03984226.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256763318|ref|ZP_05503898.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256963798|ref|ZP_05567969.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|257084340|ref|ZP_05578701.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257421693|ref|ZP_05598683.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|307271745|ref|ZP_07553016.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|312900055|ref|ZP_07759372.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|29344634|gb|AAO82392.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227176678|gb|EEI57650.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256684569|gb|EEU24264.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256954294|gb|EEU70926.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|256992370|gb|EEU79672.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257163517|gb|EEU93477.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|306511623|gb|EFM80622.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|311292812|gb|EFQ71368.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|315155557|gb|EFT99573.1| protein, SNF2 family [Enterococcus faecalis TX0043]
 gi|315573810|gb|EFU86001.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315580246|gb|EFU92437.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 1065

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|195109608|ref|XP_001999375.1| GI24474 [Drosophila mojavensis]
 gi|193915969|gb|EDW14836.1| GI24474 [Drosophila mojavensis]
          Length = 1663

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 24/211 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--A 66
            R + C+            +    C  L   +     +K        K+  L+ ++ +  A
Sbjct: 1128 RHMQCENVLGRELVSTGLAL---CKPLNGWSSIVVPDKETLITDAGKLFVLDSLLTRLKA 1184

Query: 67   NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
                +++       +  L++                 +      + ++     I +    
Sbjct: 1185 EGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLS 1244

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++F+   W+    QQ ++R       + G  + V VY LI + T
Sbjct: 1245 TRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGT 1298

Query: 176  IDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            I+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1299 IEERILQRAREKSEIQRMVISGGNFKPDTLK 1329


>gi|29828520|ref|NP_823154.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605624|dbj|BAC69689.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 962

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 24/211 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEE-----KHWKEVHDE 54
            Y    RE    ++                   Q+ +  A+Y  E+              
Sbjct: 733 LYEAVVRESMLAIETAEGIGRRGLVLKLLTSLKQICDHPALYLKEDAGGTAGLAARSGKL 792

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEW 104
            +    +    +     +V   +      +                G  + +    +  +
Sbjct: 793 ALLDELLDTLLSEDGSALVFTQYVGMARLITAHLASRAVPVELLHGGTPVPERERMVDRF 852

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G  + 
Sbjct: 853 QSGTTPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQTQP 906

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V+ LI + T+++ + + L  K  + D +L
Sbjct: 907 VQVHRLITEGTVEDRIAEMLEAKRALADAIL 937


>gi|205375279|ref|ZP_03228069.1| SNF2 family helicase [Bacillus coahuilensis m4-4]
          Length = 248

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVH-DEKIKA 58
            Y +  +E +  L+                +  QL N   +Y+ EE     +    K+  
Sbjct: 24  LYEQLVQETFEKLKTLKGFERKGLILQMLGRLKQLCNHPSLYFKEEVPVDVLKRSYKMAK 83

Query: 59  LEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  I+E    +    +V   +      +Q    +                +    +Q++ 
Sbjct: 84  LHEIVENVVESKEACLVFTQYIGMGEMIQDYVKKRFGVHAPFLNGSMPKQQRDKLVQQFQ 143

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+ P+      + G GLNL    N +V +  WW+     Q  +R       + G  + V
Sbjct: 144 NGEFPVFILSLKAGGTGLNLT-AANHVVHYDRWWNPAVENQATDR-----AYRIGQTKFV 197

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LIA  T++E +   L  K  + D ++ +
Sbjct: 198 HVHKLIASGTLEEKIDGMLEKKQALNDDIIQS 229


>gi|149196419|ref|ZP_01873474.1| hypothetical protein LNTAR_14717 [Lentisphaera araneosa HTCC2155]
 gi|149140680|gb|EDM29078.1| hypothetical protein LNTAR_14717 [Lentisphaera araneosa HTCC2155]
          Length = 1035

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 27/215 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV------YYDEEKHWKEVHDE 54
            +  Y +  R+    L+  N  A N  +   +  QL+  +       Y  +          
Sbjct: 809  IDLYQREMRQARQSLKAGN--AMNVLASLTRLRQLSCHSAFGCPEEYRPDPDLPLAQRSP 866

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTL-DKDPCTIQ 102
            K  A     +   A     +    F   L  ++K             G T   K    + 
Sbjct: 867  KAAAFIEKAKDLMAEGHSCLFFSQFTGILKEIEKELHNEHIKTHMITGETPSQKRSKIVD 926

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+       +      + G GLNL     + + F  WW+     Q I+R       + G 
Sbjct: 927  EFSESPDASVFLLSLKAAGTGLNLTRASYVFI-FDPWWNPAAENQAIDR-----SHRIGQ 980

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               V +Y +I+ ++++E V      K  + D ++ 
Sbjct: 981  DNPVIIYRMISADSVEEKVAALQAEKQKLFDEIIE 1015


>gi|323126628|gb|ADX23925.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1030

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S   +  Q+ +    + +          K+++L  ++ +   N    ++   F   L  
Sbjct: 837  LSGITRLRQICDTPSLFMDYD----GESGKLESLRTLLLQIKENGHRALIFSQFRGMLDL 892

Query: 84   LQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             ++                  ++     + +N G          + G GLNL  G + +V
Sbjct: 893  AKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSKDAFLISLKAGGVGLNLT-GADTVV 951

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               LWW+     Q I R       + G +  V VY LI + TI+E +L+   +K  +   
Sbjct: 952  LIDLWWNPAVEMQAISR-----AHRIGQEDNVEVYRLITRGTIEEKILELQESKRNLVTT 1006

Query: 194  LLNA 197
            +L+ 
Sbjct: 1007 VLDG 1010


>gi|251781815|ref|YP_002996117.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390444|dbj|BAH80903.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1032

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S   +  Q+ +    + +          K+++L  ++ +   N    ++   F   L  
Sbjct: 839  LSGITRLRQICDTPSLFMDYD----GESGKLESLRTLLLQIKENGHRALIFSQFRGMLDL 894

Query: 84   LQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             ++                  ++     + +N G          + G GLNL  G + +V
Sbjct: 895  AKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSKDAFLISLKAGGVGLNLT-GADTVV 953

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               LWW+     Q I R       + G +  V VY LI + TI+E +L+   +K  +   
Sbjct: 954  LIDLWWNPAVEMQAISR-----AHRIGQEDNVEVYRLITRGTIEEKILELQESKRNLVTT 1008

Query: 194  LLNA 197
            +L+ 
Sbjct: 1009 VLDG 1012


>gi|124515406|gb|EAY56916.1| DNA/RNA helicase, SNF2 family [Leptospirillum rubarum]
          Length = 882

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 22/209 (10%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y K  +EL   L   +  A         ++  Q+ N    +  +  W      K   L  
Sbjct: 650 YRKTVKELESALDKTDGIARKGLVLAFLMRFKQICNHPSQWLGDGGWNPKDSGKFHRLAE 709

Query: 62  IIE--KANAAPIIVAYHFN-------SDLARLQKA----FPQGRTLDKDPCTIQEWNEG- 107
           I E   A    +++   F        + L  +          G  + K    ++ + E  
Sbjct: 710 IAETVAAKQEKMLIFTQFQEATLPLAAFLGGIFGRDGLVLHGGTPVGKRRELVRRFQEDE 769

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P       + G GLNL    + +V F  WW+     Q  +R       + G  + V V
Sbjct: 770 DTPFFVLSLKAGGTGLNLT-AASHVVHFDRWWNPAVENQATDRAW-----RIGQHKNVLV 823

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  + + T++E + + +R+K+ +   +L 
Sbjct: 824 HKFLCRGTVEERIDKLIRSKTELVREVLE 852


>gi|257081744|ref|ZP_05576105.1| Snf2 family protein [Enterococcus faecalis E1Sol]
 gi|256989774|gb|EEU77076.1| Snf2 family protein [Enterococcus faecalis E1Sol]
          Length = 1065

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|170754301|ref|YP_001781764.1| phage helicase [Clostridium botulinum B1 str. Okra]
 gi|169119513|gb|ACA43349.1| phage helicase [Clostridium botulinum B1 str. Okra]
          Length = 365

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 85/202 (42%), Gaps = 23/202 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E      +I+ Y+F  ++ +++    +       ++     ++ +      ++     
Sbjct: 230 LLESTEDR-VIIFYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQ 288

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N ++++SL    E  +Q  +R       + G  R    +YLI +  I+
Sbjct: 289 AGAMGLNLQLS-NKIIYYSLPLASELFEQSKKR-----THRIGQTRTCMYWYLITKGCIE 342

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E + + L+ +    + L   L+
Sbjct: 343 EQIFETLKERRDYTNKLFEELE 364


>gi|315148655|gb|EFT92671.1| protein, SNF2 family [Enterococcus faecalis TX4244]
          Length = 1065

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|257420085|ref|ZP_05597079.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257161913|gb|EEU91873.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 1065

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+    +Q   R       + G K+ V V+ +IA+ T++E +    + K  + 
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKKVVEVWRMIAEGTVEEKMNSLQQEKRELF 1038

Query: 192  DLLLNA 197
              ++  
Sbjct: 1039 QKVIQG 1044


>gi|312866392|ref|ZP_07726610.1| SNF2 family N-terminal domain protein [Streptococcus downei F0415]
 gi|311098086|gb|EFQ56312.1| SNF2 family N-terminal domain protein [Streptococcus downei F0415]
          Length = 1036

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
             S   +  Q+    A++ D           KI +L  ++ +        ++   F   L 
Sbjct: 837  LSGITRLRQICDTPALFMDYGG-----SSGKIDSLHQLLSQIQESGHRTLIFSQFRQMLD 891

Query: 83   RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +    Q              +      + +N G   +      + G GLNL  G + +
Sbjct: 892  IAEDLVAQLGMTSYKITGSTPAETRQEMTKAFNNGSKDVFLVSLKAGGVGLNLT-GADTV 950

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +   LWW+     Q I R       + G K +V VY LI + TI+E +L+   +K  +  
Sbjct: 951  ILIDLWWNPAVEMQAISR-----AHRLGQKESVEVYRLITRGTIEEKILELQDSKRNLVT 1005

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1006 TVLDG 1010


>gi|242012609|ref|XP_002427022.1| predicted protein [Pediculus humanus corporis]
 gi|212511267|gb|EEB14284.1| predicted protein [Pediculus humanus corporis]
          Length = 1570

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++++       +++       +  L++               
Sbjct: 1127 PDKQTMVADAGKLYVLDGLLKRLKEGGHRVLIYSQMTRMIDLLEEYMWHRKHTYMRLDGS 1186

Query: 92   RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1187 SKISERRDMVADFQSRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1245

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K + + 
Sbjct: 1246 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDHLK 1296


>gi|156405034|ref|XP_001640537.1| predicted protein [Nematostella vectensis]
 gi|156227672|gb|EDO48474.1| predicted protein [Nematostella vectensis]
          Length = 1429

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
              ++       K+  L+ ++ K       +++       +  L++     +         
Sbjct: 977  PNRNSVISDSGKLTVLDGLLTKLKLQGHRVLIYSQMTRMIDILEEYMTFRKHKYMRLDGS 1036

Query: 95   ----DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                D+        N   I +      + G G+NL    + ++F+   W+    +Q ++R
Sbjct: 1037 SKISDRRDMVADFQNNKDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDEQAMDR 1095

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + V VY L+ +NTI+E +LQR R KS IQ ++++ 
Sbjct: 1096 -----AHRLGQTKQVTVYRLVTKNTIEERILQRAREKSEIQKMVISG 1137


>gi|313890879|ref|ZP_07824503.1| SNF2 family N-terminal domain protein [Streptococcus pseudoporcinus
            SPIN 20026]
 gi|313120777|gb|EFR43892.1| SNF2 family N-terminal domain protein [Streptococcus pseudoporcinus
            SPIN 20026]
          Length = 1031

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S   +  Q+ +    + E     +    K+++L  ++ +   N    ++   F   L  
Sbjct: 837  LSGITRLRQICDTPSLFME----YQGESGKLESLRTLLLQVKENGHRALIFSQFRGMLEI 892

Query: 84   LQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +++                  D+     + +N G          + G GLNL  G + +V
Sbjct: 893  VEQELSSLGLGSYKITGSTPADERQEMTRAFNNGSKDAFLISLKAGGVGLNLT-GADTVV 951

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               LWW+     Q I R       + G K  V VY LI + TI+E +L     K  +   
Sbjct: 952  LIDLWWNPAVEMQAISR-----AHRIGQKDNVEVYRLITRGTIEEKILTLQENKKNLVTT 1006

Query: 194  LLNA 197
            +L+ 
Sbjct: 1007 VLDG 1010


>gi|294140756|ref|YP_003556734.1| helicase, Snf2 family [Shewanella violacea DSS12]
 gi|293327225|dbj|BAJ01956.1| helicase, Snf2 family [Shewanella violacea DSS12]
          Length = 694

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 18/147 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEG 107
             L  ++E+     +++   F S L  + +             G++ D+    ++ + + 
Sbjct: 530 DKLPGMLEE--GRRVLIFSSFTSMLTLIGELLENLGISFVELTGKSRDR-GALVKRFQQR 586

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    ++++    WW+    QQ  +R       + G  ++VFV
Sbjct: 587 EVPVFLISLKAGGAGLNLT-AADVVIHTDPWWNPAAEQQASDR-----AHRIGQDKSVFV 640

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Y LI + T++E +     +K+ +   +
Sbjct: 641 YKLICKETVEERIQLLQESKNNLAQSI 667


>gi|291436286|ref|ZP_06575676.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339181|gb|EFE66137.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 692

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK---- 55
             Y    RE    ++                   Q+ +    Y +E+H +          
Sbjct: 460 ALYEAVVRESLLAIESAQGMGRRGLVLKLLTSLKQICDHPALYLKEEHARAGGGRLAARS 519

Query: 56  ----IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
               +    +    A     +V   +      +     +          G  + +    +
Sbjct: 520 GKLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAERAVPVDLLHGGTPVPERERMV 579

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 580 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 633

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI + T+++ + + L++K  + D +L
Sbjct: 634 TQPVQVHRLITEGTVEDRIAEMLQSKRALADAIL 667


>gi|325113188|ref|YP_004277134.1| putative helicase [Acidiphilium multivorum AIU301]
 gi|325052655|dbj|BAJ82992.1| putative helicase [Acidiphilium multivorum AIU301]
          Length = 918

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +   +L   L+     A         V+  Q+ N   ++  + +W E    K + L
Sbjct: 685 ALYSEAVGDLARSLEEAEGMARRGLVLASLVRLKQICNHPAHWLNDGNWDEAGSGKFRRL 744

Query: 60  EVIIEKANAA--PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
             I E   A    ++V   F   +A L                 G  + +    +Q + E
Sbjct: 745 REIAEAVAARQDKMLVFTQFREMVAPLAALLASVFGRDGLELHGGTPVRQRRTLVQRFQE 804

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + +P       + G GL L    + +V F  WW+     Q  +R       + G K  V
Sbjct: 805 DEEVPFFVLSLKAGGTGLTLT-AASHVVHFDRWWNPAVEAQATDR-----AFRIGQKSNV 858

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + T++E +   +  K ++   LL+ 
Sbjct: 859 LVHKFICRGTVEERIDAMIEAKQSLSTELLSG 890


>gi|239927952|ref|ZP_04684905.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 701

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK---- 55
             Y    RE    ++                   Q+ +    Y +E+H +          
Sbjct: 469 ALYEAVVRESLLAIESAQGMGRRGLVLKLLTSLKQICDHPALYLKEEHARAGGGRLAARS 528

Query: 56  ----IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
               +    +    A     +V   +      +     +          G  + +    +
Sbjct: 529 GKLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAERAVPVDLLHGGTPVPERERMV 588

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G 
Sbjct: 589 DRFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQ 642

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI + T+++ + + L++K  + D +L
Sbjct: 643 TQPVQVHRLITEGTVEDRIAEMLQSKRALADAIL 676


>gi|297748685|gb|ADI51231.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749565|gb|ADI52243.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1202

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 963  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1022

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1023 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1082

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1083 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1136

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1137 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1173


>gi|289525600|emb|CBJ15078.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis Sweden2]
 gi|296435160|gb|ADH17338.1| SWI/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296438880|gb|ADH21033.1| SWI/SNF family helicase [Chlamydia trachomatis E/11023]
          Length = 1199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|255507152|ref|ZP_05382791.1| SWI/SNF family helicase [Chlamydia trachomatis D(s)2923]
          Length = 1199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|255348934|ref|ZP_05380941.1| SWI/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503474|ref|ZP_05381864.1| SWI/SNF family helicase [Chlamydia trachomatis 70s]
          Length = 1199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|15605284|ref|NP_220070.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328995|gb|AAC68157.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296437016|gb|ADH19186.1| SWI/SNF family helicase [Chlamydia trachomatis G/11222]
          Length = 1199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E   A     +  +   +  Q+ +  AVY+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSSGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +           ++ A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|195062800|ref|XP_001996256.1| GH22391 [Drosophila grimshawi]
 gi|193899751|gb|EDV98617.1| GH22391 [Drosophila grimshawi]
          Length = 1659

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 33/223 (14%)

Query: 9    RELYCDLQGENIEAFN------------SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            R LYC+ +G                    A+    C   +  +     +K        K+
Sbjct: 1119 RHLYCESRGAAWTQIRHVQCENIVGRELVATGLALCRPRSGWSSIVVPDKETLITDAGKL 1178

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
              L+ ++ +  A    +++       +  L++                 +      + ++
Sbjct: 1179 SVLDGLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADF 1238

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                 I +      + G G+NL    + ++F+   W+    QQ ++R       + G  +
Sbjct: 1239 QTRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AHRLGQTK 1292

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
             V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1293 QVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1335


>gi|125543874|gb|EAY90013.1| hypothetical protein OsI_11583 [Oryza sativa Indica Group]
          Length = 1411

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++ +  A    +++       L  L+                  +    
Sbjct: 1090 TDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRR 1149

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       
Sbjct: 1150 DMVRDFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDR-----TH 1203

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1204 RLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 1243


>gi|270285639|ref|ZP_06195033.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270289648|ref|ZP_06195950.1| SNF2 family helicase [Chlamydia muridarum Weiss]
 gi|301337035|ref|ZP_07225237.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 91/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E+  A     +  +   +  Q+ +  A+Y+ + + +K     K  A 
Sbjct: 960  LKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDHPAIYFKDPESYKNYASGKWAAF 1019

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +  +         Q A  QG++ ++     +  N+  
Sbjct: 1020 VKLLNDSLASGYKVVVFSQYIQMIRIISLYLEEQNIQYALVQGKSQNRKEEIDRFSNDPN 1079

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1080 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1133

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1134 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|15835457|ref|NP_297216.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163332|gb|AAF73609.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1202

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 91/217 (41%), Gaps = 24/217 (11%)

Query: 7    FQRELYC--DLQGENIEAF----NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             ++E      L+ E+  A     +  +   +  Q+ +  A+Y+ + + +K     K  A 
Sbjct: 963  LKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDHPAIYFKDPESYKNYASGKWAAF 1022

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+   ++V   +   +  +         Q A  QG++ ++     +  N+  
Sbjct: 1023 VKLLNDSLASGYKVVVFSQYIQMIRIISLYLEEQNIQYALVQGKSQNRKEEIDRFSNDPN 1082

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NL   GN+++ +  WW+  +  Q ++R+      + G K  VF+Y
Sbjct: 1083 CRVFIGSLLAAGTGINLT-AGNVVIMYDRWWNPAKENQALDRV-----HRIGQKNTVFIY 1136

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1137 KLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1173


>gi|229099671|ref|ZP_04230598.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
 gi|228683741|gb|EEL37692.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
          Length = 855

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   + S    L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|206602042|gb|EDZ38524.1| Putative helicase, Snf2 family [Leptospirillum sp. Group II '5-way
            CG']
          Length = 1049

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
            + +        + ++ L  I E  A+   I++   F   L  L+ A  +   L       
Sbjct: 862  NPKGISVPAPAKFLETLAKIREALADGHRILLFSQFTGMLDILENALLKDGILFSRLDGK 921

Query: 95   ---DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +    ++E+     G   +  +   + G GL L    + +  +  WW+ +   Q  
Sbjct: 922  TPLKERQRLVEEFQRQKPGSPSVFLSSLKAGGVGLTLTN-ADFVFHYDPWWNPQVENQAT 980

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R       + G KR VFVY ++ + T++E V      K  + DL++
Sbjct: 981  DR-----SHRIGQKRPVFVYRMLTRGTVEEKVKALKEEKLELFDLVM 1022


>gi|124515798|gb|EAY57307.1| putative helicase, Snf2 family [Leptospirillum rubarum]
          Length = 1049

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
            + +        + ++ L  I E  A+   I++   F   L  L+ A  +   L       
Sbjct: 862  NPKGISVPAPAKFLETLAKIREALADGHRILLFSQFTGMLDILENALLKDGILFSRLDGK 921

Query: 95   ---DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +    ++E+     G   +  +   + G GL L    + +  +  WW+ +   Q  
Sbjct: 922  TPLKERQRLVEEFQRQKPGSPSVFLSSLKAGGVGLTLTN-ADFVFHYDPWWNPQVENQAT 980

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R       + G KR VFVY ++ + T++E V      K  + DL++
Sbjct: 981  DR-----SHRIGQKRPVFVYRMLTRGTVEEKVKALKEEKLELFDLVM 1022


>gi|292492078|ref|YP_003527517.1| SNF2-related protein [Nitrosococcus halophilus Nc4]
 gi|291580673|gb|ADE15130.1| SNF2-related protein [Nitrosococcus halophilus Nc4]
          Length = 1042

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  ++   + +G   +     S  ++  Q+ N  A +  +   + E    K++ +  ++E
Sbjct: 816  QKVKDSLAETEGIQRKGL-ILSTLMRLKQICNHPAQFLQDGSEFSEGRSHKLERVAQMVE 874

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI-- 109
            +  A    +++   F      L+K F             G    +    I E+ +     
Sbjct: 875  EVMAEGEGLLLFTQFTEIGQALEKRFQHHYHYPTYYLHGGTARRRRERMIAEFQDPDTGP 934

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+NL    N +  F  WW+     Q  +R       + G  + VFV+ 
Sbjct: 935  AVFILSLKAGGVGINLTR-ANHVFHFDRWWNPAVENQATDR-----AYRIGQTKQVFVHK 988

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++   T++E + Q L  K  +   ++
Sbjct: 989  MVTLGTLEERIDQMLEEKQRLAGSIV 1014


>gi|229118736|ref|ZP_04248087.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
 gi|228664704|gb|EEL20195.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
          Length = 855

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   + S    L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|198455503|ref|XP_001360023.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
 gi|198133273|gb|EAL29175.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
          Length = 1662

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  A    +++       +  L++               
Sbjct: 1155 PDKETLITDAGKLFVLDTLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1214

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1215 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1273

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1274 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1324


>gi|258514714|ref|YP_003190936.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778419|gb|ACV62313.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 891

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 19/187 (10%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE-VHDEKIKALEVIIEK--ANAAPIIVAYHF 77
           +A       +   Q+           +W       K    ++ I++  AN   ++V   F
Sbjct: 692 DASTVLEGLLYLRQVCCHPALLKRTLNWNHCDESGKFDLFKLKIDELQANHEKVVVFSQF 751

Query: 78  NSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S L+ ++K          +  G T+ +    +  +      + F    + G GLN+   
Sbjct: 752 TSMLSIMKKWAEEQGYATFYLDGATMKRQE-VVDSFERSDEGVFFISLKAGGVGLNI-VS 809

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               + +  WW+     Q  +RI      + G K+ VFVY+L+  N+I+E + +    K 
Sbjct: 810 CQYAIIYDPWWNPAVENQASDRI-----YRIGQKKNVFVYHLVTANSIEEKIEKLKTEKR 864

Query: 189 TIQDLLL 195
            I D LL
Sbjct: 865 EIADNLL 871


>gi|229076456|ref|ZP_04209418.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
 gi|228706642|gb|EEL58853.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
          Length = 855

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   + S    L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229105848|ref|ZP_04236475.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
 gi|228677569|gb|EEL31819.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
          Length = 855

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E   K++ +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   + S    L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|289570215|ref|ZP_06450442.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289543969|gb|EFD47617.1| predicted protein [Mycobacterium tuberculosis T17]
          Length = 517

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 288 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 347

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNE 106
            I+  A    ++    F      L                    G    +    +  +  
Sbjct: 348 EIL--AEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 405

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R V
Sbjct: 406 GDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRRTV 459

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 460 QVRKFICTGTLEEKIDEMIEEKKALADLVV 489


>gi|170070470|ref|XP_001869591.1| helicase [Culex quinquefasciatus]
 gi|167866368|gb|EDS29751.1| helicase [Culex quinquefasciatus]
          Length = 1569

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 26/223 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL-----ANGAVYYDEEKHWKEVHDEKI 56
            K Y K +R  +  ++    E+ +  +  +  L+L        +     +K        K+
Sbjct: 1119 KFYCKSRRAAWAAIRHAQCESPDGFALVLDALKLSYTSSVGWSKIVIPDKQTLVSDAGKL 1178

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
              L+ ++ +       +++       +  L++                 +      + ++
Sbjct: 1179 AVLDSLLTRLKTQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADF 1238

Query: 105  NEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                 I +      + G G+NL    + ++F+   W+    QQ ++R       + G  +
Sbjct: 1239 QSRTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AHRLGQTK 1292

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
             V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1293 QVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1335


>gi|157132188|ref|XP_001662505.1| helicase [Aedes aegypti]
 gi|108871256|gb|EAT35481.1| helicase [Aedes aegypti]
          Length = 1372

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  A    +++       +  L++               
Sbjct: 1113 PDKQTLVSDAGKLAVLDSLLTRLKAQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1172

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++ N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1173 SKISARRDMVADFQNRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1231

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1232 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1282


>gi|21227581|ref|NP_633503.1| SWF/SNF family helicase [Methanosarcina mazei Go1]
 gi|20905965|gb|AAM31175.1| SWF/SNF family helicase [Methanosarcina mazei Go1]
          Length = 1089

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 35/224 (15%)

Query: 1    MKQYHKFQRE---LYCDLQGENIEAFNSA-----------SKTVKCLQLANGAVYYDEEK 46
            MK Y    +E   LY  +  +  EA   A           S   +  Q+ N    + ++ 
Sbjct: 844  MKTYCTLTKEQASLYAAVLEDIREAIEGAEEGIQRKGIILSALSRLKQVCNHPAQFLKDN 903

Query: 47   HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF----NSDLARLQKAFP-------QGRT 93
                    K+  L  +++    N    +V   F          LQ +F         G  
Sbjct: 904  STIPGRSGKLARLTEMLDVVLENGEKALVFTQFAEMGKMVKEHLQASFGCEVLFLHGGVP 963

Query: 94   LDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    ++ + EGK  +P+      + G GLNL  G N +  F  WW+     Q  +R 
Sbjct: 964  RKQRDRMLERFQEGKEYLPIFVLSLKAGGTGLNLT-GANHVFHFDRWWNPAVENQATDR- 1021

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G K+ V V+  I   T++E + + +  K  + + ++
Sbjct: 1022 ----AFRIGQKKNVEVHKFICAGTLEEKIDEIIERKVQVAENVV 1061


>gi|301059981|ref|ZP_07200855.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300445860|gb|EFK09751.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 1002

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 77/183 (42%), Gaps = 20/183 (10%)

Query: 27  SKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
           S      Q+ N     +     ++     K    + ++E+A  +   +++   F + +  
Sbjct: 790 SLLNLLKQICNHPALINGNIDDYQNFQSGKWDLFKELLEEALASGQKVVIYSQFLNMIDI 849

Query: 84  LQKAFPQ---------GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILV 133
           ++K   Q         GRT ++    I+ +NE  +  +      + G G++L    ++++
Sbjct: 850 MEKYLAQTGTNFVSLTGRTTNR-EKIIERFNEDSECRVFVGSLKAGGVGIDL-VAASVVI 907

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+  +  Q  +R+      + G K+ V V+ L+ + T++E +   +  K  + D 
Sbjct: 908 HYDRWWNAAKEDQATDRV-----HRIGQKKGVQVFKLVTEGTLEEKIAAIIAKKRNLMDS 962

Query: 194 LLN 196
           ++ 
Sbjct: 963 VVE 965


>gi|219558075|ref|ZP_03537151.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis T17]
          Length = 527

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 298 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 357

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNE 106
            I+  A    ++    F      L                    G    +    +  +  
Sbjct: 358 EIL--AEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 415

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R V
Sbjct: 416 GDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRRTV 469

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 470 QVRKFICTGTLEEKIDEMIEEKKALADLVV 499


>gi|147676745|ref|YP_001210960.1| hypothetical protein PTH_0410 [Pelotomaculum thermopropionicum SI]
 gi|146272842|dbj|BAF58591.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 1256

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y +   ++  +++                   Q+ N  V+Y ++    + H  K +  
Sbjct: 1029 ALYRQVVEQVMEEIEHSEGITRKGLVFKLITSLKQICNHPVHYSKKGKPAKEHSGKAEKA 1088

Query: 60   EVIIE--KANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNE 106
              ++    A     ++   +      L +            F  G    K    ++++ E
Sbjct: 1089 LDLLAQIAAAGEKALIFTQYREMGELLVEMIREELQEEALFFHGGLPRQKRDEMVKKFQE 1148

Query: 107  --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G  P +     + G GLNL    + ++ + LWW+     Q  +R       + G  R 
Sbjct: 1149 DKGAAPFMVVSLKAGGTGLNLTAATH-VIHYDLWWNPAVEDQATDR-----TYRIGQTRT 1202

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ LI+  T +E +   + +K  +  L + A
Sbjct: 1203 VMVHRLISLGTFEEKINTMMASKRELAGLTVAA 1235


>gi|187934940|ref|YP_001886534.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
 gi|187723093|gb|ACD24314.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
          Length = 1050

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 28/213 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   L+   I++ N      +   +  QL        E+    +    KI 
Sbjct: 827  KIYKMYVKDIQDKLK--QIDSRNNRIAIFAYLTRLRQLCLDPSIIVED---YDGGSGKIN 881

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRT--LDKDPCTIQEW 104
              + +I+K+  N   I++   F S L          ++   +  G T   ++   T +  
Sbjct: 882  VAKELIKKSIKNNHKILLFSQFTSVLHKVCDELKGEQISYLYLDGSTPSKERIRLTHEFN 941

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G GLNL    ++++ F  WW+     Q  +R       + G K  
Sbjct: 942  NNEDIKIFLISLKAGGTGLNLT-SADMVIHFDPWWNPAIEDQATDR-----AHRIGQKNV 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V  LI + +I+E +L     K  + + ++  
Sbjct: 996  VQVIKLITKESIEEKILLLQEDKKALIEDVITG 1028


>gi|313898327|ref|ZP_07831864.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312956709|gb|EFR38340.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 377

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 80/213 (37%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K   ++   ++            +   K  Q+ N    Y  E+ ++     K++ L+
Sbjct: 150 LYRKLIADMEEKIKESEGMERRGLVLSTITKLKQICNHPDQYLGEESYRIKDSGKLEMLK 209

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN-E 106
            I E        ++V   +   +  L     +           G  + K    +  +  E
Sbjct: 210 EICETIYEKRERVLVFTQYKEIIPYLHATLAKIFHQEGYILHGGTPVKKRSEIVAAFQQE 269

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +P +     + G GLNL    N ++ F  WW+     Q  +R       + G K+ V 
Sbjct: 270 AYVPYIVLSLKAAGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AFRIGQKKNVI 323

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V+ LI++ T++E + + +++K  +   ++   K
Sbjct: 324 VHKLISKGTVEEKIDELIKSKVELSQQVIGDGK 356


>gi|188587761|ref|YP_001921450.1| hypothetical ATP-dependent helicase [Clostridium botulinum E3 str.
            Alaska E43]
 gi|188498042|gb|ACD51178.1| hypothetical ATP-dependent helicase [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1050

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 29/220 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   L+   I++ N      +   +  QL        E+    +    KI 
Sbjct: 827  KMYKIYVKDIQDKLK--QIDSRNNRITIFAYLTRLRQLCLDPSIIVED---YDGGSGKIN 881

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI--QEW 104
              + +I+K+  N   I++   F S L          ++   +  G T  K+   +  +  
Sbjct: 882  VAKELIKKSIKNNHKILLFSQFTSVLHKVCDELKGEQISYLYLDGSTPSKERIRLAHEFN 941

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   I +      + G GLNL    ++++ F  WW+     Q  +R       + G K  
Sbjct: 942  NNEDIKIFLISLKAGGTGLNLT-SADMVIHFDPWWNPAIEDQATDR-----AHRIGQKNV 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
            V V  LI + +I+E +L     K  + + ++   LK++ +
Sbjct: 996  VRVIKLITKESIEEKILLLQEDKKALIEDVITGELKEDGL 1035


>gi|229020462|ref|ZP_04177215.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
 gi|229026691|ref|ZP_04183032.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228734643|gb|EEL85296.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228740838|gb|EEL91083.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
          Length = 855

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 82/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  +++ +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQDIIERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   +      L++   +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKRMLEEKFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|320093666|ref|ZP_08025543.1| hypothetical protein HMPREF9005_0155 [Actinomyces sp. oral taxon 178
            str. F0338]
 gi|319979382|gb|EFW10867.1| hypothetical protein HMPREF9005_0155 [Actinomyces sp. oral taxon 178
            str. F0338]
          Length = 1048

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 24/184 (13%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDL 81
             +   +  QLA      D    +  V   K +     L  I+ +      +V   F S L
Sbjct: 858  LASITRLRQLALDPALVD--GAYAHVGSAKTEYLVGQLVQIVPR--GHQALVFSQFTSFL 913

Query: 82   ARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            AR+++A            G T  +    I+ +  G   +      + G GL L     + 
Sbjct: 914  ARIRRALERRGITVAQLDGATRGR-ARVIERFRSGAASVFLISLKAGGTGLTLTEADYVY 972

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V    WW+     Q ++R       + G  + V VY L+A +TI+  V++    K  +  
Sbjct: 973  VM-DPWWNPAAEAQAVDR-----AHRIGQSKKVNVYRLVADDTIEAKVVELQDRKRRLVS 1026

Query: 193  LLLN 196
             +++
Sbjct: 1027 KVVD 1030


>gi|170084045|ref|XP_001873246.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164650798|gb|EDR15038.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1573

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  L+ ++++  A    +++ +     +  +++                 L+    
Sbjct: 1314 DSAKLARLDSLLQELKAGDHRVLIYFQMTRMMDLMEEYLIYRQYKYLRLDGSSKLEDRRD 1373

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +W     I +      + G G+NL    + +VF+   W+     Q ++R       +
Sbjct: 1374 MVIDWQTRPDIFVFLLSTRAGGLGINLT-AADTVVFYDHDWNPSNDAQAMDR-----AHR 1427

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TIDE ++Q  R K  +QD+++
Sbjct: 1428 LGQTRQVTVYRLITKGTIDERIIQLARVKKDVQDIVV 1464


>gi|71004464|ref|XP_756898.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
 gi|74704380|sp|Q4PGL2|INO80_USTMA RecName: Full=Putative DNA helicase INO80
 gi|46095890|gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
          Length = 1910

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            V   K+  L+V++ +  AN   +++ +     +  +++                 +    
Sbjct: 1576 VDSSKLAKLDVLLRELKANGHRVLIYFQMTRMIDLMEEYLIYRQYKYLRLDGASKISDRR 1635

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +W  + ++ +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1636 DMVTDWQTKPELFIFLLSTRAGGLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AH 1689

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY LI + TIDE +++  R K  +QD+++
Sbjct: 1690 RLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVV 1727


>gi|187736256|ref|YP_001878368.1| Non-specific serine/threonine protein kinase [Akkermansia muciniphila
            ATCC BAA-835]
 gi|187426308|gb|ACD05587.1| Non-specific serine/threonine protein kinase [Akkermansia muciniphila
            ATCC BAA-835]
          Length = 1171

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 77/211 (36%), Gaps = 25/211 (11%)

Query: 2    KQYH-KFQR--ELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y  + +R  +    L  +     NS +     ++  Q+       D    + +    K
Sbjct: 943  QLYKAELRRIQQALLGLDSDESVKKNSFAILQGLMRLRQICCHPGLVDP--KYAKEDSAK 1000

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW 104
            + AL  ++++       ++V   F S L  ++              G+T D+     +  
Sbjct: 1001 MTALFYLLDQLREEGHKVLVFSQFVSMLEIIKNRLEAENRPLNYLTGQTKDRRGEIEKFQ 1060

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G GLNL    + +V +  WW+     Q I+R       + G K  
Sbjct: 1061 TTKDPSVFLLSLKAGGAGLNLT-SASYVVLYDPWWNPAVESQAIDR-----THRIGQKNK 1114

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  Y L+ +++++E +      K+ +   +L
Sbjct: 1115 VIAYRLLTKDSVEEKIRILQHQKNQLVANVL 1145


>gi|253574567|ref|ZP_04851908.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
 gi|251846272|gb|EES74279.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
          Length = 1053

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA---VYYDEEKHWKEVHDEKI 56
            + Y     EL   +  ++  A      +   +  Q+ +     V     K        K+
Sbjct: 814  RLYQSVTAELLDQIGSQSGIARKGLVLSSLTRLKQICDHPELVVGSRPAKTAAFGRSGKM 873

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
            + L  +++    N    ++   +      LQ+   +           G    +    ++ 
Sbjct: 874  ERLGELLDMIMDNGEGALIFTQYVRMGELLQERLTERYGVRPFFLHGGVPKAERDQMVRA 933

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + EG+  P+      + G GLNL    N +V +  WW+     Q  +R+      + G +
Sbjct: 934  FQEGEGSPIFVLSLKAGGVGLNLTR-ANHVVHYDRWWNPAVENQATDRVF-----RIGQQ 987

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+ LI Q T++E + + +  K T+ + ++
Sbjct: 988  KNVEVHKLICQGTLEERIDELIERKKTLSEQVV 1020


>gi|152977445|ref|YP_001376962.1| non-specific serine/threonine protein kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026197|gb|ABS23967.1| Non-specific serine/threonine protein kinase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 918

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEK-HWKEVHDEKIK 57
            Y +  ++      +L G     F       K  Q+ N  A+Y  E+          K++
Sbjct: 695 LYEQLVQDTLKNVENLNGIERRGF-ILLMLNKLKQICNHPALYLKEDVPKDIVQRSMKMQ 753

Query: 58  ALEVIIE--KANAAPIIVAYHFN---SDLARLQKAFPQGRTL--------DKDPCTIQEW 104
            L  +IE  K      ++   +      L  + +     R L         +    I+++
Sbjct: 754 TLMDLIENIKNQNESCLIFTQYIGMGHMLQTVLEETFGQRVLYLNGSVPKKERDKMIEQF 813

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G GLNL    N ++ +  WW+     Q  +R       + G KR 
Sbjct: 814 QNRTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRF 867

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 868 VHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|125586260|gb|EAZ26924.1| hypothetical protein OsJ_10853 [Oryza sativa Japonica Group]
          Length = 1396

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++ +  A    +++       L  L+                  +    
Sbjct: 1136 TDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRR 1195

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       
Sbjct: 1196 DMVRDFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDR-----TH 1249

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1250 RLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 1289


>gi|94265883|ref|ZP_01289612.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93453578|gb|EAT03977.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 389

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 24/209 (11%)

Query: 5   HKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKA 58
              +R     LQ    EA         ++ ++  + A    +   +            + 
Sbjct: 167 ETIRRRALEVLQENEGEAAGRRHLKVLAELMRLRRAACHPRLVLGKGALMAGKLPLFAEV 226

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGK 108
           L  II  +N    +V   F   LA +++             G T  ++    +  +  G+
Sbjct: 227 LHDII--SNRHKALVFSQFVDHLAIVREYLDGQGIGYQYLDGSTPARERQRAVAAFQAGE 284

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL    + ++    WW+     Q  +R       + G +R V +Y
Sbjct: 285 GEVFCISLKAGGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQERPVTIY 338

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+ + +I+E +L     K  + + LL  
Sbjct: 339 RLVTKGSIEEKILALHGHKRDLAENLLRG 367


>gi|257467968|ref|ZP_05632064.1| SNF2-related protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062254|ref|ZP_07926739.1| helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687930|gb|EFS24765.1| helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1030

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
              +  QL N    + E+   K    E +  L    +      ++V   F   L  ++K  
Sbjct: 841  ITRLRQLCNHPQLFLEDYSGKSSKLEALLELLEECKS-GGHRVLVFSQFTEMLEIIKKNM 899

Query: 89   PQ--------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            P+        G+T  K+    ++ +N G   +      + G GLN+  G + ++ F  WW
Sbjct: 900  PENMTYLYLDGKTKAKERIELVENFNSGNEDVFIISLKAGGSGLNIT-GADTVIHFDPWW 958

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     Q   R       + G K+ V V+ ++A+ TI+E +      K  +   +L+
Sbjct: 959  NSSVEDQATAR-----AYRLGQKKNVNVFKMVAKGTIEEKINTIKEGKEELIREILD 1010


>gi|304311942|ref|YP_003811540.1| Predicted helicase [gamma proteobacterium HdN1]
 gi|301797675|emb|CBL45896.1| Predicted helicase [gamma proteobacterium HdN1]
          Length = 883

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +   EL   L+  +            ++  Q+ N    +  +  WK     K   L
Sbjct: 651 ALYQRTVEELASALEKSDGVERKGLVLAFLMRFKQICNHPSQWLGDGTWKPADSGKFARL 710

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
             I E   A    ++V   F    A L                 G  + K    ++ + E
Sbjct: 711 AEITETIAAKQEKVLVFTQFRETTAPLAAFLGNVFGREGLVLHGGTAVGKRRELVKRFQE 770

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + IP       + G GLNL    + ++ F  WW+     Q  +R       + G  R V
Sbjct: 771 DEAIPFFVLSLKAGGTGLNLT-AASHVIHFDRWWNPAVENQATDRAW-----RIGQHRNV 824

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  + + TI+E +   +R+K  +   +L  
Sbjct: 825 LAHKFVCRGTIEERIDALIRSKQQLVQDVLEG 856


>gi|195451229|ref|XP_002072824.1| GK13479 [Drosophila willistoni]
 gi|194168909|gb|EDW83810.1| GK13479 [Drosophila willistoni]
          Length = 1892

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
              K        K+  L+ ++ +  +    +++       +  L++               
Sbjct: 1151 PNKETLITDAGKLFVLDSLLTRLKSEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1210

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1211 SKISARRDMVADFQTRSDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1269

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1270 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1320


>gi|108708155|gb|ABF95950.1| transcriptional activator, putative, expressed [Oryza sativa Japonica
            Group]
          Length = 1457

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++ +  A    +++       L  L+                  +    
Sbjct: 1136 TDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRR 1195

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ N   I +      + G G+NL    + ++F+ + W+  + QQ ++R       
Sbjct: 1196 DMVRDFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDR-----TH 1249

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1250 RLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 1289


>gi|332173366|gb|AEE22620.1| SNF2-related protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1440

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 31/214 (14%)

Query: 8    QRELYCDLQGENIEAFNS--------------ASKTVKCLQLANGAVYYDEEKHWKEVHD 53
            +R+ Y  L+   I+  N                ++ VK  Q           +       
Sbjct: 1214 ERDFYEALRLNAIDNINQSGQHANASEQRIRMLAELVKLRQACCNPKLV-MAETTIPSAK 1272

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQE 103
                   +   K N    ++   F   L  +++             G T  K     +  
Sbjct: 1273 LAALDALLEELKLNNHKALIFSQFVGHLQLIKQHLEDKGFDYQYLDGSTPQKQRQASVNA 1332

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +  G+  +      + G GLNL    + ++    WW+    +Q  +R       + G  R
Sbjct: 1333 FQRGQGDIFLISLKAGGSGLNLT-AADYVIHMDPWWNPAVEEQASDR-----AHRIGQLR 1386

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V +Y LI QNTI+E ++   + K  + D LL  
Sbjct: 1387 PVTIYRLITQNTIEEKIVALHKQKRDLADNLLAG 1420


>gi|296331256|ref|ZP_06873728.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305676243|ref|YP_003867915.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151371|gb|EFG92248.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305414487|gb|ADM39606.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 922

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +++         K++
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEDQTELLAGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++    A     ++   +      +++   +           +L K      ++++
Sbjct: 753 KLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 867 VHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|310824688|ref|YP_003957046.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397760|gb|ADO75219.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1299

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPC 99
            +   K++ +   +E+  A  +  ++   F   L           +   +  G+T   +  
Sbjct: 1125 LPSSKLERMVERVEELRAEGSRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQ 1184

Query: 100  T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              ++ +  G+  +      + G GLNL    + ++    WW+     Q  +R       +
Sbjct: 1185 ARVEAFQRGEGDVFLISLKAGGTGLNLT-AADHVIHLDPWWNPAVEDQATDR-----AHR 1238

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  R V V  L+++ TI+E +L     K  +   LL+
Sbjct: 1239 IGQTRPVTVSRLVSEGTIEEAILALHAEKRELAMSLLS 1276


>gi|224371758|ref|YP_002605922.1| putative helicase [Desulfobacterium autotrophicum HRM2]
 gi|223694475|gb|ACN17758.1| putative helicase [Desulfobacterium autotrophicum HRM2]
          Length = 942

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
             +  Q+A+      +     ++   K + L   + +A      +++  +F   L  +  
Sbjct: 754 LGELRQIASIPEIKSDN----QIISPKREVLMEHVTEAVAGNHKVLIFANFLHSLDCISL 809

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              +         G T D+     +   +     L     + G GLNL    + +  F  
Sbjct: 810 DMEKAGLDHLVMTGATRDRSAIVERFQTDNSCAALMMTLKTGGLGLNLT-AADYVFLFDP 868

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           WW++    Q I+R       + G K  VF Y LIA+NTI+E +L+    K  + D L+ A
Sbjct: 869 WWNVAAENQAIDR-----AHRMGQKNTVFSYRLIARNTIEEKILKLQAKKKALFDSLIAA 923


>gi|164688165|ref|ZP_02212193.1| hypothetical protein CLOBAR_01810 [Clostridium bartlettii DSM
           16795]
 gi|164602578|gb|EDQ96043.1| hypothetical protein CLOBAR_01810 [Clostridium bartlettii DSM
           16795]
          Length = 700

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+ F   L   +   N +     S   K   L+   +  +      +  + K++ L  
Sbjct: 479 KVYNTFLSILKKQIIENNSDNVTLFSYLTKLRMLS---ISPELVVKNYKGKNSKLEMLIK 535

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK-IP 110
           II+ +    I+V   F   L  + K F +               K    ++++N+ K   
Sbjct: 536 IIKSSKDRKILVFSQFTQVLGLIAKRFEKENIEFNYLDGKIDAKKRLELVEDFNQNKSKK 595

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL    +++V F  W++     Q  +R       + G K  V V  L
Sbjct: 596 VFLISLKAGGTGLNLT-SASMVVHFDPWFNPAVEDQASDR-----AHRIGQKNIVDVIKL 649

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           I+++T++E V      K  + D ++N
Sbjct: 650 ISKDTVEEKVEAIKEYKKELADDIIN 675


>gi|195391896|ref|XP_002054595.1| GJ24541 [Drosophila virilis]
 gi|194152681|gb|EDW68115.1| GJ24541 [Drosophila virilis]
          Length = 1632

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  A    +++       +  L++               
Sbjct: 1160 PDKETLITDAGKLFVLDSLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1219

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1220 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1278

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + TI+E +LQR R KS IQ ++++    K +T+ 
Sbjct: 1279 -----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLK 1329


>gi|302555175|ref|ZP_07307517.1| helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302472793|gb|EFL35886.1| helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 284

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
             Y    RE    ++     A             Q+ +    + +E+H +          
Sbjct: 53  ALYEAVVRESMLAIETAEGIARRGMVLKLLTSLKQICDHPALFLKEEHAQSGDRLAARSG 112

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
              +    +    A     +V   +      +                G  + +    + 
Sbjct: 113 KLALLDELLDTLLAEDGSALVFTQYVGMARLITSHLATRAVPVDLLHGGTPVPERERMVD 172

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+    +Q  +R       + G  
Sbjct: 173 RFQAGSTPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPAVEEQATDR-----AYRIGQT 226

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V V+ LI + T+++ + + L  K  + D +L
Sbjct: 227 QPVQVHRLITEGTVEDRIAEMLEAKRALADAIL 259


>gi|329947496|ref|ZP_08294696.1| protein, SNF2 family [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328524738|gb|EGF51795.1| protein, SNF2 family [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1205

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
               K++AL   +    +     +V   F   L+ +++                      I
Sbjct: 1024 PSAKVEALLEHLRPILSEGHRALVFSQFTRYLSGVREHLEDAGVRTAYMDGSTPNRQDVI 1083

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +  G+  +      + G GL L    + +     WW+ +  +Q ++R       + G 
Sbjct: 1084 DAFRAGEADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAVDR-----THRIGQ 1137

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V VY L++ +TI+E V+     K+ +   ++  
Sbjct: 1138 DKPVMVYRLVSADTIEEKVMALKEKKAELFARVVEG 1173


>gi|323508306|emb|CBQ68177.1| related to INO80-ATPase with chromatin remodeling and helicase
            activity [Sporisorium reilianum]
          Length = 1910

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            V   K+  L++++ +  AN   +++ +     +  +++                 +    
Sbjct: 1581 VDSSKMAKLDMLLRELKANGHRVLIYFQMTRMIDLMEEYLIYRQYKYLRLDGASKISDRR 1640

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +W  + ++ +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1641 DMVTDWQTKPELFIFLLSTRAGGLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AH 1694

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY LI + TIDE +++  R K  +QD+++
Sbjct: 1695 RLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVV 1732


>gi|303388827|ref|XP_003072647.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
 gi|303301788|gb|ADM11287.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
          Length = 1257

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 32/217 (14%)

Query: 2    KQYHKF------QRELYCDLQGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDE 54
            K Y +       ++    DL+   I+  N   K  + L LA +   ++ +          
Sbjct: 1029 KLYREINERGGKEKLEDVDLEYGKIDQKNVGFKRTRDLLLAVSHMSHFKDSSEV----SC 1084

Query: 55   KIKALEVIIEKANA----APIIVAYHFNSDLA-RLQKAFPQGRTL----------DKDPC 99
            K+KALE II         + I++ + F S +   ++    + +                 
Sbjct: 1085 KVKALEDIISLCGGEDLRSKILIFFQFKSSIDFVIKDIMEKYKFKYSRLDGSVPSSTRAK 1144

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +E+N G   +LF      G GLNL  G + +V +   W+     Q ++R       + 
Sbjct: 1145 IAEEFNTGTTQILFLTTQVGGLGLNLT-GADTVVMYEHDWNPFNDLQAMDR-----AHRI 1198

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G KR V V+ LIA+NT++E V+     K  + + L++
Sbjct: 1199 GQKRTVNVFRLIAKNTLEEKVMNLQSFKMFVANSLVS 1235


>gi|319936092|ref|ZP_08010514.1| SWF/SNF family helicase [Coprobacillus sp. 29_1]
 gi|319808879|gb|EFW05397.1| SWF/SNF family helicase [Coprobacillus sp. 29_1]
          Length = 1069

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 25/206 (12%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  + L   L    +   +  +   +  QL   +  +Y        E    K+K    +I
Sbjct: 855  QVNKSLQEKLDIHQLGRIDILAMLTRLRQLCQDSRLLY-----ETVEEPSSKLKGCMELI 909

Query: 64   EKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPL 111
                 N   I++   F S L  +++                + +K    +  + + +  L
Sbjct: 910  HSLKENHKKILLFSSFTSVLHLIEEQCHKEHISYYLLDGSISKEKRKKMVDAFQKDETTL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL      ++ F  WW++    Q  +R       + G K AV V+ LI
Sbjct: 970  FLISLKAGGAGLNLT-SAQAVIHFDPWWNMSAKNQATDR-----AHRIGQKEAVQVFSLI 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             +N+I+E ++     K  + D  +  
Sbjct: 1024 MKNSIEEKIMDLQNQKKNLADTFVEG 1049


>gi|25011706|ref|NP_736101.1| Snf2 family protein [Streptococcus agalactiae NEM316]
 gi|77414227|ref|ZP_00790389.1| Snf2 family protein [Streptococcus agalactiae 515]
 gi|24413246|emb|CAD47325.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159716|gb|EAO70865.1| Snf2 family protein [Streptococcus agalactiae 515]
          Length = 1032

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             S   +  Q+ +   ++ D +         K+++L  ++ +   N    ++   F   L 
Sbjct: 839  LSGITRLRQICDTPRLFMDYDGE-----SGKLESLHQLLTQIKENGHRALIFSQFRGMLD 893

Query: 83   RLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++                  ++     + +N G          + G GLNL  G + +
Sbjct: 894  IAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAFLISLKAGGVGLNLT-GADTV 952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V   LWW+     Q I R       + G K  V VY LI + TI+E +L+   TK  +  
Sbjct: 953  VLIDLWWNPAVEMQAISR-----AHRLGQKENVEVYRLITRGTIEEKILEMQETKKHLVT 1007

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1008 TVLDG 1012


>gi|115371958|ref|ZP_01459270.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115370923|gb|EAU69846.1| helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 857

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPC 99
           +   K++ +   +E+  A  +  ++   F   L           +   +  G+T   +  
Sbjct: 683 LPSSKLERMVERVEELRAEGSRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQ 742

Query: 100 T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  G+  +      + G GLNL    + ++    WW+     Q  +R       +
Sbjct: 743 ARVEAFQRGEGDVFLISLKAGGTGLNLT-AADHVIHLDPWWNPAVEDQATDR-----AHR 796

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R V V  L+++ TI+E +L     K  +   LL+
Sbjct: 797 IGQTRPVTVSRLVSEGTIEEAILALHAEKRELAMSLLS 834


>gi|163942929|ref|YP_001647813.1| non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865126|gb|ABY46185.1| Non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 918

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + + +   K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 754

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 755 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|319745629|gb|EFV97930.1| Snf2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1032

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             S   +  Q+ +   ++ D +         K+++L  ++ +   N    ++   F   L 
Sbjct: 839  LSGITRLRQICDTPRLFMDYDGE-----SGKLESLRQLLTQIKENGHRALIFSQFRGMLD 893

Query: 83   RLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++                  ++     + +N G          + G GLNL  G + +
Sbjct: 894  IAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAFLISLKAGGVGLNLT-GADTV 952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V   LWW+     Q I R       + G K  V VY LI + TI+E +L+   TK  +  
Sbjct: 953  VLIDLWWNPAVEMQAISR-----AHRLGQKENVEVYRLITRGTIEEKILEMQETKKHLVT 1007

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1008 TVLDG 1012


>gi|270014503|gb|EFA10951.1| hypothetical protein TcasGA2_TC004111 [Tribolium castaneum]
          Length = 1441

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++++       +++       +  L++               
Sbjct: 1078 PDKETLVTDSGKLSVLDGLLKRLKEEGHRVLIYSQMTKMIDLLEEYMWHRHHKYMRLDGS 1137

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1138 SKISERRDMVADFQARTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1196

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + +I+E +LQR R KS IQ L+++    K +T+ 
Sbjct: 1197 -----AHRLGQTKQVTVYRLICKGSIEERILQRAREKSEIQKLVISGGNFKPDTLK 1247


>gi|241765480|ref|ZP_04763446.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
 gi|241364765|gb|EER59758.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
          Length = 940

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 77/207 (37%), Gaps = 28/207 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVII 63
              +R+ +   +G  I   ++    +K  Q+     +     K  + +   K++ L  ++
Sbjct: 690 RALERQGF---EGSQIAILDA---LLKLRQVCCDPRLVKGTTKTAQTMERAKLELLAGLL 743

Query: 64  EKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP-CTIQEWNEGK--- 108
                    ++V   F   L           L      G+T  +     ++++       
Sbjct: 744 PTLVDEGRRMLVFSQFTEMLMLVAEQLDTLALPYLTLTGQTPPRQRGAVVRQFQAQDETS 803

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+L     + G GLNL    + +V    WW+    +Q   R       + G  + VFVY
Sbjct: 804 APILLVSLKAGGLGLNLT-AADTVVHLDPWWNPAVEEQATAR-----AHRIGQDQPVFVY 857

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+ + +I+E +L+    K+ +   +L
Sbjct: 858 KLVVEGSIEERMLELQARKAALAQGVL 884


>gi|218666513|ref|YP_002425806.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|218518726|gb|ACK79312.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
          Length = 1381

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 26/211 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Y   +R+   + +    ++ + A     ++  K  + A                  K+
Sbjct: 1153 AHYEALRRQAIVEAEAAIAQSGSQAHFHILAQLTKLRRAACDPRLVSPNLDIVG---AKV 1209

Query: 57   KALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            +    +     AN    +V   F   L  L+          +       +      I+++
Sbjct: 1210 RTFADLAGDLSANGHKALVFSQFVDFLTLLREPLDAAGIPYQYLDGSTPVADRERRIRDF 1269

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  L      + G GLNL    + ++    WW+     Q + R       + G  R 
Sbjct: 1270 QAEKGNLFLISLKAGGFGLNLT-AADYVIITDPWWNPAAEDQAMGR-----AHRIGQLRP 1323

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY L+AQ T++E ++     K  + D +L
Sbjct: 1324 VTVYRLVAQGTLEEQIIALHHDKRALADGVL 1354


>gi|299755713|ref|XP_001828834.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
 gi|298411348|gb|EAU92841.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
          Length = 1625

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  L+ ++++  A    ++V +     +  +++                 L+    
Sbjct: 1352 DSAKLARLDSLLQELKAGDHRVLVYFQMTRMMDLMEEYLIYRQYKYLRLDGSSKLEDRRD 1411

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +W     I +      + G G+NL    + ++F+   W+     Q ++R       +
Sbjct: 1412 MVIDWQTRPDIFVFLLSTRAGGLGINLT-AADTVIFYDHDWNPSNDAQAMDR-----AHR 1465

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TIDE ++Q  R K  +QD+++
Sbjct: 1466 LGQTRQVTVYRLITKGTIDERIIQLARVKKDVQDIVV 1502


>gi|229169956|ref|ZP_04297649.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
 gi|228613474|gb|EEK70606.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
          Length = 855

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + + +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|77405797|ref|ZP_00782881.1| Snf2 family protein [Streptococcus agalactiae H36B]
 gi|77175584|gb|EAO78369.1| Snf2 family protein [Streptococcus agalactiae H36B]
          Length = 1032

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             S   +  Q+ +   ++ D +         K+++L  ++ +   N    ++   F   L 
Sbjct: 839  LSGITRLRQICDTPRLFMDYDGE-----SGKLESLRQLLTQIKENGHRALIFSQFRGMLD 893

Query: 83   RLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++                  ++     + +N G          + G GLNL  G + +
Sbjct: 894  IAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAFLISLKAGGVGLNLT-GADTV 952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V   LWW+     Q I R       + G K  V VY LI + TI+E +L+   TK  +  
Sbjct: 953  VLIDLWWNPAVEMQAISR-----AHRLGQKENVEVYRLITRGTIEEKILEMQETKKHLVT 1007

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1008 TVLDG 1012


>gi|239826817|ref|YP_002949441.1| non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
 gi|239807110|gb|ACS24175.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
          Length = 933

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 33/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--------AVYYDEEKHWKEVH- 52
             Y +  ++       E  +  N   +    LQ+ NG        A+Y  E    + +  
Sbjct: 701 ALYEQLVQDTL-----ERAKDANPFQRRGLILQMLNGVKQICDHPALYLKERTPRRVLER 755

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K+K L  ++E+  AN    ++   +      +Q+                        
Sbjct: 756 SHKLKKLVELLEQIRANDESCLIFTQYVRMGDMIQQLLADLFDEPVLFLNGSVPKAARDR 815

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++ + + P+      + G GLNL    N ++ F  WW+     Q  +R       + 
Sbjct: 816 MVEQFQKRQAPIFILSLKAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AYRI 869

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V V+ LI   TI+E +   L  K  + D++   
Sbjct: 870 GQTKFVHVHKLITTGTIEEKIDDMLEQKLALADVITEG 907


>gi|182419549|ref|ZP_02950797.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237667122|ref|ZP_04527106.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182376584|gb|EDT74159.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237655470|gb|EEP53026.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1060

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 21/205 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    +E+   +  E +      S      QL         E +       K   +  I
Sbjct: 842  VYDACVKEIQDRINSEKMNNITIFSFLTTLRQLCLDPSLVTNEYN---GESGKFNEVLNI 898

Query: 63   IEKANAA-PIIVAYHFNS---------DLARLQKAFPQGRTLDKDP-CTIQEWNEGKIP- 110
            I+K      I++   F           D  ++Q  +  G          ++E+N  K   
Sbjct: 899  IKKDQKENKILLFSQFTKALKKLALKLDKEKIQYCYLDGSISSSARIKLVEEFNNDKNKR 958

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    N+++ F  WW+     Q  +R       + G KR V V  L
Sbjct: 959  VFLISLKAGGTGLNLT-SANMVIHFDPWWNPSIEDQATDR-----AHRIGQKRDVEVIKL 1012

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            IA+ TI+E ++     K  + + +L
Sbjct: 1013 IAKGTIEEKIVLLQEDKRNLINDVL 1037


>gi|330797148|ref|XP_003286624.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
 gi|325083372|gb|EGC36826.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
          Length = 1848

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K++ L+ +++        +++   F   +  L+                  L+    
Sbjct: 1508 DSGKLQVLDKLLKDLKEGGHRVLIYSQFTKMINILEDFMIYRKYKYLRLDGSSKLEDRRD 1567

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++  +  I        +CG G+NL    + +VF+   W+    +Q ++R       +
Sbjct: 1568 MVDDFQSDPSIFAFLLSTRACGIGINLT-SADTVVFYDSDWNPTVDEQAMDRC-----HR 1621

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G +R V VY LI + TI+E +L+R + K  IQ +++   K E
Sbjct: 1622 LGQQRPVTVYRLITKGTIEEKILKRAKQKHHIQSIVITGGKFE 1664


>gi|77411931|ref|ZP_00788262.1| Snf2 family protein [Streptococcus agalactiae CJB111]
 gi|77162028|gb|EAO73008.1| Snf2 family protein [Streptococcus agalactiae CJB111]
          Length = 1032

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             S   +  Q+ +   ++ D +         K+++L  ++ +   N    ++   F   L 
Sbjct: 839  LSGITRLRQICDTPRLFMDYDGE-----SGKLESLRQLLTQIKENGHRALIFSQFRGMLD 893

Query: 83   RLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++                  ++     + +N G          + G GLNL  G + +
Sbjct: 894  IAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAFLISLKAGGVGLNLT-GADTV 952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V   LWW+     Q I R       + G K  V VY LI + TI+E +L+   TK  +  
Sbjct: 953  VLIDLWWNPAVEMQAISR-----AHRLGQKENVEVYRLITRGTIEEKILEMQETKKHLVT 1007

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1008 TVLDG 1012


>gi|189233685|ref|XP_970280.2| PREDICTED: similar to helicase [Tribolium castaneum]
          Length = 1427

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++++       +++       +  L++               
Sbjct: 1064 PDKETLVTDSGKLSVLDGLLKRLKEEGHRVLIYSQMTKMIDLLEEYMWHRHHKYMRLDGS 1123

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1124 SKISERRDMVADFQARTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1182

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI + +I+E +LQR R KS IQ L+++    K +T+ 
Sbjct: 1183 -----AHRLGQTKQVTVYRLICKGSIEERILQRAREKSEIQKLVISGGNFKPDTLK 1233


>gi|321262603|ref|XP_003196020.1| ATPase; Ino80p [Cryptococcus gattii WM276]
 gi|317462495|gb|ADV24233.1| ATPase, putative; Ino80p [Cryptococcus gattii WM276]
          Length = 1813

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            V   K+  L+ ++ +  A    +++ +     +  +++                 + +  
Sbjct: 1498 VDSAKLARLDSLLRELKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRLDGSSPIAERR 1557

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  W     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1558 DMVTGWQTNPDIFVFCLSTRAGGLGINLT-AADTVIFYDHDWNPSSDAQAMDR-----AH 1611

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+A+ TI+E +LQ  R K  +QD+++
Sbjct: 1612 RVGQTKQVTVYRLVARGTIEERILQMARGKKDVQDVVV 1649


>gi|229063904|ref|ZP_04200205.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
 gi|229136057|ref|ZP_04264813.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228647378|gb|EEL03457.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228716374|gb|EEL68082.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
          Length = 855

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y +  ++   +++G   IE          K  Q+ N    Y +E+  + + +   K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 691

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           +  +IE  K      ++   +      L+    +                +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+     Q  +R       + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|22537758|ref|NP_688609.1| Snf2 family protein [Streptococcus agalactiae 2603V/R]
 gi|76787127|ref|YP_330236.1| Snf2 family protein [Streptococcus agalactiae A909]
 gi|76798459|ref|ZP_00780697.1| Snf2 family protein [Streptococcus agalactiae 18RS21]
 gi|77408487|ref|ZP_00785225.1| Snf2 family protein [Streptococcus agalactiae COH1]
 gi|22534649|gb|AAN00482.1|AE014265_11 Snf2 family protein [Streptococcus agalactiae 2603V/R]
 gi|76562184|gb|ABA44768.1| Snf2 family protein [Streptococcus agalactiae A909]
 gi|76586193|gb|EAO62713.1| Snf2 family protein [Streptococcus agalactiae 18RS21]
 gi|77172929|gb|EAO76060.1| Snf2 family protein [Streptococcus agalactiae COH1]
          Length = 1032

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 26   ASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
             S   +  Q+ +   ++ D +         K+++L  ++ +   N    ++   F   L 
Sbjct: 839  LSGITRLRQICDTPRLFMDYDGE-----SGKLESLRQLLTQIKENGHRALIFSQFRGMLD 893

Query: 83   RLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
              ++                  ++     + +N G          + G GLNL  G + +
Sbjct: 894  IAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAFLISLKAGGVGLNLT-GADTV 952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V   LWW+     Q I R       + G K  V VY LI + TI+E +L+   TK  +  
Sbjct: 953  VLIDLWWNPAVEMQAISR-----AHRLGQKENVEVYRLITRGTIEEKILEMQETKKHLVT 1007

Query: 193  LLLNA 197
             +L+ 
Sbjct: 1008 TVLDG 1012


>gi|19173110|ref|NP_597661.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
 gi|19168777|emb|CAD26296.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
          Length = 1256

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 30/216 (13%)

Query: 2    KQYHKFQ----RELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +      +E     +L+   ++  N   K  + L LA   + + ++         K
Sbjct: 1028 KLYREIDEKGGKESLGDAELEYGKVDQKNVGFKRTRDLFLAVSHIGHFKDSTEV---SCK 1084

Query: 56   IKALEVIIE----KANAAPIIVAYHFNSDLARL------QKAFPQGRTLDKDP-----CT 100
            +KALE II     +   + I++ + F S +  +      +  F   R     P       
Sbjct: 1085 VKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKKYKFKYSRLDGSVPSAARTKI 1144

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +E+N G   +LF      G GLNL  G + +V +   W+     Q ++R       + G
Sbjct: 1145 AEEFNTGTTQMLFLTTQVGGLGLNLT-GADTVVMYEHDWNPFNDLQAMDR-----AHRIG 1198

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             KR V V+  IA+NT++E V+     K  + + L++
Sbjct: 1199 QKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVS 1234


>gi|225174512|ref|ZP_03728511.1| Non-specific serine/threonine protein kinase [Dethiobacter
            alkaliphilus AHT 1]
 gi|225170297|gb|EEG79092.1| Non-specific serine/threonine protein kinase [Dethiobacter
            alkaliphilus AHT 1]
          Length = 1185

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 22/212 (10%)

Query: 2    KQYHKF-QRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEK---- 55
              Y +  +RE+    +   +E      +      Q+ N  V++ +       +  K    
Sbjct: 958  ALYQQIVEREMSAVSESSGMERRGRILALMTSLKQICNHPVHFSKNGAPYPQNSGKAQLA 1017

Query: 56   IKALEVIIEKANAAPIIVAYHFNSD-LARLQKA--------FPQGRTLDKDPCTIQEW-N 105
             + L  I++    A I   Y    D L R+ +A        F    T  +    I+E+ N
Sbjct: 1018 FQLLRQILQDGEKALIFTQYKQMGDILIRMLEAELNQPLPFFHGSLTPKQREQRIEEFQN 1077

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL+     + G GLNL    ++L  + LWW+     Q  +R       + G  + V
Sbjct: 1078 NPHTPLMVVSLKAGGTGLNLTAATHVL-HYDLWWNPAVEDQATDR-----AYRIGQTKNV 1131

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+  I   T++E +   L  K  + DL ++A
Sbjct: 1132 TVHRFITLGTLEEKIDTILTAKKDLADLTISA 1163


>gi|239983251|ref|ZP_04705775.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 616

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    + +E   + E    K+  L
Sbjct: 390 LYEAVVRESMAAIERSEGIARRGLVLKLLTSLKQICNHPAQFLKESPARLEGRSGKLALL 449

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
           + +++         +V   +      +           +       + +    +  + EG
Sbjct: 450 DELLDTLLAEDCSALVFTQYVGMAKLIGAHLAARAVPAELLHGATPVAERERMVDRFQEG 509

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+L     + G GLNL    + +  +  WW+    +Q  +R       + G  R V V
Sbjct: 510 RTPVLVLSLKAAGTGLNLTRASH-VFHYDRWWNPAVEEQATDR-----AYRIGQTRPVQV 563

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + LI + T+++ + + L  K  + D +L
Sbjct: 564 HRLITEGTVEDRIAELLTAKRALADAVL 591


>gi|320533736|ref|ZP_08034345.1| hypothetical protein HMPREF9057_02235 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134049|gb|EFW26388.1| hypothetical protein HMPREF9057_02235 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 199

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTI 101
              KI+ L   ++   +     ++   F   L+ +++                      I
Sbjct: 37  PSAKIQVLLEHLDPIISEGHRALIFSQFTRYLSGVREHLEAAGVRTTYLDGSTPDRQRVI 96

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+  +      + G GL L    + +     WW+ +  +Q ++R       + G 
Sbjct: 97  DAFRAGQADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAVDR-----THRIGQ 150

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY L++ +TI+E V+     K+ +   ++  
Sbjct: 151 DKPVMVYRLVSADTIEEKVMALKEKKAELFARVVEG 186


>gi|16080681|ref|NP_391509.1| ATP-binding SNF2 helicase or protein kinase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311584|ref|ZP_03593431.1| hypothetical protein Bsubs1_19616 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315911|ref|ZP_03597716.1| hypothetical protein BsubsN3_19532 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320824|ref|ZP_03602118.1| hypothetical protein BsubsJ_19485 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325110|ref|ZP_03606404.1| hypothetical protein BsubsS_19646 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81345827|sp|P94593|YWQA_BACSU RecName: Full=Uncharacterized ATP-dependent helicase ywqA
 gi|2636153|emb|CAB15645.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 922

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++    A     ++   +      +++   +           +L K      ++++
Sbjct: 753 KLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QRKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 867 VHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|150015858|ref|YP_001308112.1| non-specific serine/threonine protein kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902323|gb|ABR33156.1| Non-specific serine/threonine protein kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 979

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 22/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y  + + +   ++          S   K  ++        E+ +       KI+ +  
Sbjct: 757 AVYSNYVKRVKAAMKNNKDGRIEIFSYLTKLREICLDPSLILEDYN---GGSGKIEEVVE 813

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK- 108
           II+    +   I++   F S L R+     +         G+T  K+    ++++N  + 
Sbjct: 814 IIKNHIDSGGKILLFSQFTSALDRIGDRLNKEKIEFFHLSGKTNPKNRIKMVKDFNTNEF 873

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G GLNL    N+++ F  WW+     Q  +R       + G +  V V 
Sbjct: 874 VNVFLISLKAGGTGLNLT-SANLVIHFDPWWNPAVEAQATDR-----AHRIGQRDVVEVI 927

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+++ TI+E ++     K  + D +L  
Sbjct: 928 KLVSKGTIEEKIILLQEDKKQLIDSILTG 956


>gi|321313173|ref|YP_004205460.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
 gi|320019447|gb|ADV94433.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
          Length = 922

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++    A     ++   +      +++   +           +L K      ++++
Sbjct: 753 KLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QRKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 867 VHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|1763712|emb|CAB05939.1| ywqA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 867

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 639 LYEQLVKDTFDHMTSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLE 697

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++    A     ++   +      +++   +           +L K      ++++
Sbjct: 698 KLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKF 757

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 758 QRKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 811

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 812 VHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 844


>gi|291486201|dbj|BAI87276.1| hypothetical protein BSNT_05537 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 922

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +E+         K++
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLE 752

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCT--IQEW 104
            L  ++    A     ++   +      +++   +           +L K      ++++
Sbjct: 753 KLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QRKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 867 VHVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|322806869|emb|CBZ04439.1| hypothetical protein H04402_02632 [Clostridium botulinum H04402
           065]
          Length = 366

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 86/202 (42%), Gaps = 23/202 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINNTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +E      +I+ Y+F  ++ +++    +       ++     ++ +      ++     
Sbjct: 230 SLESTEDR-VIIFYNFTEEMKQIKEVCGRLEKPVSIVNGQTKDLENYKTKDNAVVLVQYQ 288

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N +V++SL    E  +Q  +R       + G  R    +YLI +N+I+
Sbjct: 289 AGAMGLNLQLS-NKIVYYSLPLASELFEQSKKR-----THRIGQTRTCMYWYLITKNSIE 342

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E + + L+ +    D L   L+
Sbjct: 343 EQIFETLKERKDFTDKLFEELE 364


>gi|291455081|ref|ZP_06594471.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
 gi|291358030|gb|EFE84932.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
          Length = 690

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    + +E   + E    K+  L
Sbjct: 464 LYEAVVRESMAAIERSEGIARRGLVLKLLTSLKQICNHPAQFLKESPARLEGRSGKLALL 523

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
           + +++         +V   +      +           +       + +    +  + EG
Sbjct: 524 DELLDTLLAEDCSALVFTQYVGMAKLIGAHLAARAVPAELLHGATPVAERERMVDRFQEG 583

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+L     + G GLNL    + +  +  WW+    +Q  +R       + G  R V V
Sbjct: 584 RTPVLVLSLKAAGTGLNLTRASH-VFHYDRWWNPAVEEQATDR-----AYRIGQTRPVQV 637

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + LI + T+++ + + L  K  + D +L
Sbjct: 638 HRLITEGTVEDRIAELLTAKRALADAVL 665


>gi|163751389|ref|ZP_02158614.1| hypothetical protein KT99_01444 [Shewanella benthica KT99]
 gi|161328692|gb|EDP99840.1| hypothetical protein KT99_01444 [Shewanella benthica KT99]
          Length = 1004

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKA 58
            Y     E+   ++             S  ++  Q  N       +   +      K++ 
Sbjct: 774 IYQSIVDEITTQMEQTQESQGQKVIMLSALLRLKQCCNHPAQVLQDGSEFSIERSIKLQR 833

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWN 105
           L    ++A  N   I++   F    +++QK                 +  +    IQ++ 
Sbjct: 834 LVETCKEAIGNNESILIFSQFTEVCSQIQKILKNQLGFQTYYLHGATSRKRREQMIQQFQ 893

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               P  +      + G G+ L    N ++ F  WW+     Q  +R       + G ++
Sbjct: 894 AEDSPPAVFILSLKAGGVGITLTK-ANHVIHFDRWWNPAVEDQATDR-----AYRIGQQK 947

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VF +  I   TI+E + + L  K  I D ++
Sbjct: 948 TVFAHKFITLGTIEEKIDKMLEDKKKIADSII 979


>gi|121604005|ref|YP_981334.1| SNF2-like protein [Polaromonas naphthalenivorans CJ2]
 gi|120592974|gb|ABM36413.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
          Length = 899

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y      L   L+            +  ++  Q+ N    +  +  WK     K   L
Sbjct: 666 ALYQDAVHNLAAALEDAEGIGRKGLVLSFLMRFKQICNHPSQWLGDGAWKAQDSGKFARL 725

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
             ++E   A    ++V   F      L                 G  + +    ++ + E
Sbjct: 726 RELVEVIAAKQEKVLVFTQFRETTEPLAAFLGSIFGREGLVLHGGTPVARRRELVRRFQE 785

Query: 107 GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  P       + G GLNL    + ++ F  WW+     Q  +R       + G +R V
Sbjct: 786 DEQTPFFVLSLKAGGAGLNLT-AASHVIHFDRWWNPAVENQATDR-----AFRIGQQRNV 839

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + T+++ + Q + +K  +   +L  
Sbjct: 840 LVHKFICRGTVEDRIDQLIESKQQLVQDVLEG 871


>gi|197118846|ref|YP_002139273.1| helicase [Geobacter bemidjiensis Bem]
 gi|197088206|gb|ACH39477.1| helicase, putative [Geobacter bemidjiensis Bem]
          Length = 1120

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 22/191 (11%)

Query: 25   SASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            + +  +K  Q  L++  +         ++ D  +  L  +   A    ++V   F S L 
Sbjct: 925  ALTAILKLRQICLSSKLILPQAPDRSPKI-DFLVDQLMELF--AEGHSVLVFSQFTSFLD 981

Query: 83   RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++   Q             + +    +Q + E   P +      + G GLNL    + 
Sbjct: 982  IVEQGLSQHGIGFSRLDGSTPVSRRKEMVQRFQESAEPGVFLLSLKAGGRGLNLTR-ASY 1040

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+     Q  +R       + G +R V +  L+ +++I+E +++  + K  + 
Sbjct: 1041 VFHLDPWWNPAVESQASDR-----AHRIGQQRQVTITRLLMRHSIEEKMMELKKRKLKLY 1095

Query: 192  DLLLNALKKET 202
              LL   + E 
Sbjct: 1096 RALLEEAEHEG 1106


>gi|253583434|ref|ZP_04860632.1| non-specific serine/threonine protein kinase [Fusobacterium varium
            ATCC 27725]
 gi|251834006|gb|EES62569.1| non-specific serine/threonine protein kinase [Fusobacterium varium
            ATCC 27725]
          Length = 1022

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 34/199 (17%)

Query: 29   TVKCLQLANG-----AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
              +  QL N      A Y  E    + + +   +       K+    +++   F   L+ 
Sbjct: 832  LTRLRQLCNHPKLFLADYDGESSKLEALLELLEEC------KSGGHRVLLFSQFTEMLSI 885

Query: 84   LQKAFPQ--------GRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +++  P+        G+T  +     ++ +N G+  +      + G GLNL  G + ++ 
Sbjct: 886  IKENIPKDMTYLYLDGKTKSEHRMELVERFNSGEGDIFIISLKAGGSGLNLT-GADTVIH 944

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI---- 190
            F  WW+     Q  +R       + G  + V V+ +IA+ TI+E +      K  +    
Sbjct: 945  FDPWWNSSVENQATDR-----AYRMGQTKNVNVFKMIAKGTIEEKINIIKDEKEKLIREI 999

Query: 191  ----QDLLLNALKKETIHV 205
                Q+ +++  KK+ + +
Sbjct: 1000 LDEKQENIISMTKKDILEL 1018


>gi|323144713|ref|ZP_08079295.1| SNF2 family N-terminal domain protein [Succinatimonas hippei YIT
            12066]
 gi|322415530|gb|EFY06282.1| SNF2 family N-terminal domain protein [Succinatimonas hippei YIT
            12066]
          Length = 1337

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANG-AVYYDEEKHWKEVHDEK---- 55
              Y     E    L  +      N  +      Q+ +  AVY +   H K     K    
Sbjct: 1109 ALYQAKLDESLNKLSSDVKSKMINVITTINALKQICDSPAVYDEGNSHNKPEDSGKSVAV 1168

Query: 56   IKALEVIIEKANAAPIIVAY--------HFNSDLARLQKAFPQGRT-LDKDPCTIQEW-N 105
            +  LE I+++     I   Y         +  D   +   F  G T L +    I  + N
Sbjct: 1169 LDLLENILDQGKKTIIFTQYLKMGYLLKQYIKDKFAIDADFLTGETTLKERQNMIDSFQN 1228

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L     + G G+NL    ++++ F LWW+     Q  +R       + G  + V
Sbjct: 1229 DPDKSILILSLKAGGSGINLT-AASVVIHFDLWWNPAVENQATDR-----AYRIGQNKTV 1282

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VY ++   T++E +   L  K  + +L +
Sbjct: 1283 QVYRMLCSGTLEENIDATLSMKKELNELTV 1312


>gi|225164937|ref|ZP_03727151.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
 gi|224800459|gb|EEG18841.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
          Length = 940

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 24/217 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           +Y +   E    L  +   A         +   +  Q+          K  +     KI 
Sbjct: 703 EYARICAEGLQRLGDDVSAAIREKSFGLLALLTRLRQVCCDPDMLPWIKDARLADSGKIS 762

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
            L   + +  AN   +++   F   L R++ A              G TLD+        
Sbjct: 763 LLIERLAEVIANGHKVVIFSQFVMLLNRVRDALAHSFPDLPRYELTGMTLDRLKPVQGFQ 822

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N      +     + G G+ L +  + +     WW+     Q ++R+      + G    
Sbjct: 823 NADGAAAMLVSLKAAGTGITL-HSADYVFLLDPWWNPAVEAQAVDRV-----HRIGQTST 876

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VFVY ++   TI+E +     +K  + D L+  L  +
Sbjct: 877 VFVYRMVTAGTIEERIEALKASKRDLFDKLIGGLGGD 913


>gi|322419839|ref|YP_004199062.1| SNF2-like protein [Geobacter sp. M18]
 gi|320126226|gb|ADW13786.1| SNF2-related protein [Geobacter sp. M18]
          Length = 1124

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 25   SASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            + +  +K  Q  L +  +  D      ++ +  +  L+ +   A    ++V   F S L 
Sbjct: 929  ALTAILKLRQICLCSRLILPDATDRSPKI-EFLVDQLQELF--AEGHSVLVFSQFTSFLD 985

Query: 83   RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +Q+   Q             + +    +Q + +   P +      + G GLNL    + 
Sbjct: 986  IVQQGLAQHGITSSRLDGTTPVGRRKELVQNFQDSVEPGVFLLSLKAGGRGLNLTR-ASY 1044

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+     Q  +R       + G KR V +  L+ +++I+E +++  + K  + 
Sbjct: 1045 VFHLDPWWNPAVESQASDR-----AHRIGQKRQVTITRLLMRHSIEEKMMELKKRKLKLY 1099

Query: 192  DLLLNALKKETIHV 205
              LL   + +    
Sbjct: 1100 RALLEDAEHQGAAT 1113


>gi|253700371|ref|YP_003021560.1| SNF2-related protein [Geobacter sp. M21]
 gi|251775221|gb|ACT17802.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1120

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 22/191 (11%)

Query: 25   SASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            + +  +K  Q  L++  +         ++ D  +  L+ +   A    ++V   F S L 
Sbjct: 925  ALTAILKLRQICLSSKLILPQAPDRSPKI-DFLVDQLQELF--AEGHSVLVFSQFTSFLD 981

Query: 83   RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++   Q             + +    +Q + E   P +      + G GLNL    + 
Sbjct: 982  IVEQGLSQHGIGFSRLDGSTPVSRRKEMVQRFQESAEPGVFLLSLKAGGRGLNLTR-ASY 1040

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+     Q  +R       + G +R V +  L+ +++I+E +++  + K  + 
Sbjct: 1041 VFHLDPWWNPAVESQASDR-----AHRIGQQRQVTITRLLMRHSIEEKMMELKKRKLKLY 1095

Query: 192  DLLLNALKKET 202
              LL   + E 
Sbjct: 1096 RALLEEAEHEG 1106


>gi|85014495|ref|XP_955743.1| transcriptional activator [Encephalitozoon cuniculi GB-M1]
 gi|19171437|emb|CAD27162.1| GLOBAL TRANSCRIPTIONAL ACTIVATOR (SNF2/RAD54 family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 883

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
              K+  L+ ++ K  A    +++ +     +  ++     +G T  +            
Sbjct: 724 DSGKLVVLDELLPKLKAEGHRLLMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLKASARAE 783

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I++W      +      + G G+NL    + +VF+   W+    QQ ++R       + 
Sbjct: 784 VIRDWQASDKFIFLLSTRAGGLGINLT-AADTVVFYDSDWNPTADQQAMDR-----AHRL 837

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY LI + T++E VL+    K  IQ ++++ 
Sbjct: 838 GQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVIHG 875


>gi|242040921|ref|XP_002467855.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
 gi|241921709|gb|EER94853.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
          Length = 1478

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K+  L++++ +  +    +++       L  L+                  +    
Sbjct: 1150 TDSGKLHTLDMLLRRLRSEGHRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRR 1209

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ N   + +      + G G+NL    + ++F+ + W+  + QQ ++R       
Sbjct: 1210 DMVRDFQNRNDVFVFLLSTRAGGLGINLT-AADTVIFYEIDWNPTQDQQAMDR-----TH 1263

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1264 RLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 1303


>gi|329767794|ref|ZP_08259310.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
 gi|328838895|gb|EGF88489.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
          Length = 321

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 82/203 (40%), Gaps = 27/203 (13%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K Y +F++    + +                + +   QLA+    ++E K          
Sbjct: 132 KHYKEFEKHAVVEFKSKLFGEVEYVGDTQLKERLFLRQLAS---IHNENKK--------- 179

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEWNEGKIPLLF 113
           + L+ II       +I+ Y+FN +   ++   P+ R +   + +    + +N     +  
Sbjct: 180 EKLKDIINSTEGR-LIIFYNFNHEKEAIKSCIPKDRPISYVNGELVDKENYNNADNSITL 238

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G N+Q   N L+F+S     E++ Q I+RI      + G ++  F Y L+ Q
Sbjct: 239 MQYQAGAKGHNMQK-ANHLIFYSPTEKCEDYMQSIKRI-----HRIGQEKPCFYYKLVVQ 292

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           N+I+E + + L       + L N
Sbjct: 293 NSIEEDIYKALERGEDYTNELFN 315


>gi|58266666|ref|XP_570489.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110324|ref|XP_775989.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74685408|sp|Q5KHM0|INO80_CRYNE RecName: Full=Putative DNA helicase INO80
 gi|50258657|gb|EAL21342.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57226722|gb|AAW43182.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1765

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            V   K+  L+ ++ +  A    +++ +     +  +++                 + +  
Sbjct: 1450 VDSAKLARLDSLLRELKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRLDGSSPIAERR 1509

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  W     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1510 DMVTSWQTNPDIFVFCLSTRAGGLGINLT-AADTVIFYDHDWNPSSDAQAMDR-----AH 1563

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+A+ TI+E +LQ  R K  IQD+++
Sbjct: 1564 RVGQTKQVTVYRLVARGTIEERILQMARGKKDIQDVVV 1601


>gi|325261436|ref|ZP_08128174.1| helicase, SNF2/RAD54 family [Clostridium sp. D5]
 gi|324032890|gb|EGB94167.1| helicase, SNF2/RAD54 family [Clostridium sp. D5]
          Length = 871

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 26/209 (12%)

Query: 7   FQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             R++  DL+ +  EA          +  +K  Q+ N    Y  ++ +      K   L+
Sbjct: 646 LYRKVILDLENKLAEAEGIERCGLVLTSIMKLKQICNHPDQYMGQQTFALEDSGKFAMLK 705

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
            I E        +++   F      L                 G  + K    ++ +   
Sbjct: 706 EICETIYEKRERVLIFTQFKEITEYLGDFLKSIFKTEGYVLHGGTPVKKRSEIVEAFQGE 765

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           K IP +     + G GLNL    N ++ F  WW+     Q  +R       + G ++ V 
Sbjct: 766 KYIPYIVLSVKAGGTGLNLTK-ANHVIHFDRWWNPAVENQATDR-----AFRIGQEKNVM 819

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ L+   TI+E +   + +K  + + ++
Sbjct: 820 VHKLVCTGTIEEKIDAMINSKKELAENVI 848


>gi|29348762|ref|NP_812265.1| Snf2 family helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340668|gb|AAO78459.1| Snf2 family helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1027

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
             ++  QLA    + + +        ++ I   + +  ++    +++   F   L  L + 
Sbjct: 840  ILRLRQLACHPQLIFPDFDGVSGKTEQIIDTFDTL--RSEGHKVLIFSSFVRHLEILAEV 897

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            F Q         G T ++         +  +        + G GLNL     + +    W
Sbjct: 898  FRQRGWKYALLTGSTNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDPW 956

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+     Q I R       + G  + V  Y  I QN+I+E +LQ    K  + +  +
Sbjct: 957  WNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|311742706|ref|ZP_07716515.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
 gi|311314334|gb|EFQ84242.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
          Length = 867

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 61  VIIEKANAAPIIVAY-HFNSDLAR------LQKAFPQGRT-LDKDPCTIQEWNEGKIPLL 112
            I+ +  AA +   Y      L+R      +   +  G T + +    +Q+++ G+ P+ 
Sbjct: 708 EIVAEDGAALVFTQYARMGHLLSRHLADRGIDHFYLHGGTPIPRRERMVQQFSAGEAPVF 767

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + ++ +  WW+     Q  +R       + G  ++V V+ L++
Sbjct: 768 VLSLKAAGTGLNLTR-ADHVIHYDRWWNPAVEDQATDR-----AHRIGQTKSVQVHRLMS 821

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           + TI+E + + + +K  + D ++NA
Sbjct: 822 EGTIEESIAELIASKRALADAVVNA 846


>gi|37521987|ref|NP_925364.1| helicase [Gloeobacter violaceus PCC 7421]
 gi|35212986|dbj|BAC90359.1| gll2418 [Gloeobacter violaceus PCC 7421]
          Length = 1054

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +E+   ++     A          +  Q+ N  + +  +   +      K+  L
Sbjct: 822  LYAAVLKEVEAQIEQVEGIARKGLILATLTRLKQICNHPMQFLQDGSAFSPERSHKLCRL 881

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNE 106
            + + E+  A    ++V   F+   A L++ F Q R             +K    I ++ +
Sbjct: 882  DEMAEEVLAEGESLLVFTQFHEIGAALERHFRQVRRWGTYYIHGGVSREKREKLIADFQD 941

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G G+ L    N +  F  WW+     Q  +R       + G  + 
Sbjct: 942  PDSEPAVFILSLKAGGVGITLTR-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQTKN 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFV+  +A  T++E + + L  K  +   ++
Sbjct: 996  VFVHKFVALGTLEERIDRMLEEKKRLASAIV 1026


>gi|164656581|ref|XP_001729418.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
 gi|159103309|gb|EDP42204.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
          Length = 1517

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
            V   K+  L+ ++ +  A    +++ +     +  +++                 +    
Sbjct: 1199 VDSSKLARLDTLLRELKAGGHRVLIYFQMTRMIDLMEEYLIHRQYKYLRLDGASKISDRR 1258

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +W    ++ +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1259 DMVTDWQTRPELFVFLLSTRAGGLGINLT-AADTVIFYDHDWNPSNDSQAMDR-----AH 1312

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY LI + TIDE +++  R K  +QD+++
Sbjct: 1313 RLGQTKQVTVYRLITKGTIDERIVKLARNKKEVQDIVV 1350


>gi|298387126|ref|ZP_06996680.1| Snf2 family protein [Bacteroides sp. 1_1_14]
 gi|298260276|gb|EFI03146.1| Snf2 family protein [Bacteroides sp. 1_1_14]
          Length = 1027

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
             ++  QLA    + + +        ++ I   + +  ++    +++   F   L  L + 
Sbjct: 840  ILRLRQLACHPQLIFPDFDGISGKTEQIIDTFDTL--RSEGHKVLIFSSFVRHLEILAEV 897

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            F Q         G T ++         +  +        + G GLNL     + +    W
Sbjct: 898  FRQRGWKYALLTGSTNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDPW 956

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+     Q I R       + G  + V  Y  I QN+I+E +LQ    K  + +  +
Sbjct: 957  WNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|17233188|ref|NP_490278.1| hypothetical protein all7172 [Nostoc sp. PCC 7120]
 gi|17135710|dbj|BAB78256.1| all7172 [Nostoc sp. PCC 7120]
          Length = 1055

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 73/211 (34%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    R++   LQ            +  +K  Q+ N    +  +   +      K+  L
Sbjct: 823  LYEVVVRDVEEKLQEAEGIQRKGLILSTLMKLKQICNHPRQFLQDNSEFLPERSHKLSRL 882

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
              ++++A      +++   F     +++K               G +  +    I ++  
Sbjct: 883  VEMVDEAISEGESLLIFSQFTEVCEQIEKYLKHNLHCNTYYLHGGTSRQRREQMISDFQN 942

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G G+ L    N +  F  WW+     Q  +R       + G K+ 
Sbjct: 943  PDTEASVFVLSLKAGGVGITLTK-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQKKN 996

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFV+  +A  T++E + Q +  K  +   ++
Sbjct: 997  VFVHKFVALGTLEERIDQMIEDKKKLSSAVV 1027


>gi|265764898|ref|ZP_06093173.1| SNF family helicase [Bacteroides sp. 2_1_16]
 gi|263254282|gb|EEZ25716.1| SNF family helicase [Bacteroides sp. 2_1_16]
          Length = 1016

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ- 85
            ++  QL+        +         K+  +    E  ++    +++   F   L  +  
Sbjct: 828 ILRLRQLSCHPQLVLPD---FIGDSGKLYQIIETFETLRSEGHKVLIFSSFVKHLELVAG 884

Query: 86  --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    AF  G + ++     +   + KI        + G GLNL     + +    
Sbjct: 885 EFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLKAGGVGLNLTQADYVFI-IDP 943

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G    V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 944 WWNPAAESQAIAR-----AHRIGQNNQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 996


>gi|253568895|ref|ZP_04846305.1| Snf2 family helicase [Bacteroides sp. 1_1_6]
 gi|251840914|gb|EES68995.1| Snf2 family helicase [Bacteroides sp. 1_1_6]
          Length = 1027

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 29   TVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
             ++  QLA    + + +        ++ I   + +  ++    +++   F   L  L + 
Sbjct: 840  ILRLRQLACHPQLIFPDFDGISGKTEQIIDTFDTL--RSEGHKVLIFSSFVRHLEILAEV 897

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            F Q         G T ++         +  +        + G GLNL     + +    W
Sbjct: 898  FRQRGWKYALLTGSTNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDPW 956

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+     Q I R       + G  + V  Y  I QN+I+E +LQ    K  + +  +
Sbjct: 957  WNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|168701069|ref|ZP_02733346.1| Non-specific serine/threonine protein kinase [Gemmata obscuriglobus
           UQM 2246]
          Length = 894

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            ++ ++  Q+ N          +      K + L  I E+  +    ++V   F      
Sbjct: 685 LAQLMRLKQICNHPAQVAGTGDYAADRSGKFRRLAEIAEEIASRQEKVLVFTQFREIADP 744

Query: 84  LQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
           L +               G ++ K    + ++      P       + G GLNL    + 
Sbjct: 745 LAEFLATLFGRSGLVLHGGTSVKKRKEFVDQFQREDGPPFFVLSLKAGGTGLNLTAAAH- 803

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V F  WW+     Q  +R       + G K+ V V+  I + T++E + + +  KS + 
Sbjct: 804 VVHFDRWWNPAIENQATDR-----AFRIGQKKNVLVHKFICRGTVEERIDEMIARKSRVA 858

Query: 192 DLLLNA 197
           D  +  
Sbjct: 859 DEAIGG 864


>gi|331697415|ref|YP_004333654.1| SNF2-like protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952104|gb|AEA25801.1| SNF2-related protein [Pseudonocardia dioxanivorans CB1190]
          Length = 1053

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++G +  A   N  +   K  Q+ N       +         K+  LE
Sbjct: 806  LYRTVVDDMLDRIEGTDGIARRGNVLAAMAKLKQVCNHPAQLLHDGSPIGRRSGKVTRLE 865

Query: 61   VIIEK--ANAAPIIVA---YHFNSDLA-RLQKAFPQ-------GRTLDKDPCTIQEWNEG 107
             I+E   A    ++       F S L   L   F Q       G    +    ++ +   
Sbjct: 866  EILESILAEGDKVLCFTQYAEFASMLVPHLSGRFDQEVLYLHGGTPKKRRDEMVERFQSP 925

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P +      + G GL L    + +V    WW+     Q  +R       + G +R V 
Sbjct: 926  DGPAIFLLSLKAGGTGLTLT-AASHVVHLDRWWNPAVENQATDR-----AFRIGQRRNVQ 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  L+   T++E +   + +K  +   ++
Sbjct: 980  VRTLVCPGTVEERIDDLITSKKALSGKVI 1008


>gi|303390899|ref|XP_003073680.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302827|gb|ADM12320.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 879

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK---------DPC 99
              K+  L+ ++ +  A    +++ +     +  ++     +G T  +            
Sbjct: 720 DSGKMIILDELLPRLKAEGHRLLIYFQMTRMIDLIEDYLVKKGYTYLRLDGSLKASARAD 779

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I++W      +      + G G+NL    + ++F+   W+    QQ ++R       + 
Sbjct: 780 VIRDWQTNDKFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTADQQAMDR-----AHRL 833

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY LI + T++E VL+    K  IQ ++++ 
Sbjct: 834 GQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVIHG 871


>gi|311070141|ref|YP_003975064.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
 gi|310870658|gb|ADP34133.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
          Length = 924

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANG-AVY-YDEEKHWKEVHDEKIK 57
            Y +  ++ +     L G   +A    S   +  Q+ +  A+Y  +++         K++
Sbjct: 694 LYEQLVKDTFEHMSSLTGMQRKAL-ILSMLGRLKQICDHPALYLKEDQTELLAGRSVKLE 752

Query: 58  ALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT-IQEW 104
            L  ++          ++   +      ++K   +          G    +D  + ++++
Sbjct: 753 KLLELMTAIRDQNESCLIFTQYIQMGNMMKKLLEKTFGEPVQFLNGSLSKQDRDSLVEKF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+     Q  +R       + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ +I   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKMITTGTIEEKIDMMLETKQTLNDQIIQS 899


>gi|312878818|ref|ZP_07738618.1| SNF2-related protein [Aminomonas paucivorans DSM 12260]
 gi|310782109|gb|EFQ22507.1| SNF2-related protein [Aminomonas paucivorans DSM 12260]
          Length = 1027

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 20/191 (10%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD- 80
               +   +  Q+ N   ++  +    E    K+  L  ++ +        +V   F    
Sbjct: 820  EVLALLTRLKQVCNHPAHFLGDGSPLEGRSGKLARLVELLAQVREQGECALVFSQFAEMG 879

Query: 81   ---LARLQKAFPQ-------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
                  LQ+   +       G    +    ++ +  EG   +      + G GL L    
Sbjct: 880  GLLRDYLQRRLGEEVLFLHGGVPRVRRDEMVERFQGEGGPGVFVLSLKAGGTGLTLSR-A 938

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            N +V +  WW+     Q  +R       + G ++ VFV+ LI   T++E +   L +K+ 
Sbjct: 939  NHVVHYDRWWNPAVEDQATDR-----AYRIGQRKNVFVHPLIVAGTLEERIDALLESKAD 993

Query: 190  IQDLLLNALKK 200
            + D ++ A ++
Sbjct: 994  LADRVVGAGER 1004


>gi|311032005|ref|ZP_07710095.1| SNF2 family helicase [Bacillus sp. m3-13]
          Length = 937

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIK 57
            Y +  +E      +L G             +  Q+ +    Y +E+  + +     K++
Sbjct: 713 IYEQLVKETLDKVEELGGIQRRGL-VLKMLGQLKQVCDHPALYLKEETPENLLMRSSKME 771

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDK------DPCTIQEW 104
            L  ++E+        ++   + S    + +A       +GR L+           IQE+
Sbjct: 772 KLVELVEQIRLRGESCLIFTQYISMGNMIIEALESTLGEKGRFLNGSVVKKNRDQLIQEF 831

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +G+  +L     + G GLNL    N ++ +  WW+     Q  +R       + G  R 
Sbjct: 832 QDGEFHVLVLSLKAGGTGLNLT-AANHVIHYDRWWNPAVENQATDR-----AYRIGQSRF 885

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  IA  T++E +   + +K  + + ++ +
Sbjct: 886 VHVHKFIATGTLEEKIDAMIESKQALNNQIITS 918


>gi|53711505|ref|YP_097497.1| Snf2 family helicase [Bacteroides fragilis YCH46]
 gi|52214370|dbj|BAD46963.1| Snf2 family helicase [Bacteroides fragilis YCH46]
          Length = 1016

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ- 85
            ++  QL+        +         K+  +    E  ++    +++   F   L  +  
Sbjct: 828 ILRLRQLSCHPQLVLPD---FIGDSGKLYQIIETFETLRSEGHKVLIFSSFVKHLELVAG 884

Query: 86  --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    AF  G + ++     +   + KI        + G GLNL     + +    
Sbjct: 885 EFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLKAGGVGLNLTQADYVFI-IDP 943

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G    V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 944 WWNPAAESQAIAR-----AHRIGQNNQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 996


>gi|307149654|ref|YP_003891024.1| SNF2-like protein [Cyanothece sp. PCC 7822]
 gi|306986783|gb|ADN18659.1| SNF2-related protein [Cyanothece sp. PCC 7822]
          Length = 1048

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    +++   ++            +  +K  Q+ N    +  +   +      K++ L
Sbjct: 817  LYEAVVKDVMEQIEETEGIQRKGLILSTLMKLKQICNHPRQFLQDNSEFTPERSHKLERL 876

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
              ++E+  A    +++   F      LQ      R             +K    I  + +
Sbjct: 877  GEMVEEVIAEGESLLIFSQFTEIGEALQHYIKHTRHYNTYYLHGGTPRNKREQMIASFQD 936

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+     Q  +R       + G ++ 
Sbjct: 937  PETDPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQQKN 990

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFV+  +   T++E + Q +  K  +   ++
Sbjct: 991  VFVHKFVTLGTLEERIDQMIEDKKKVASSIV 1021


>gi|148266412|ref|YP_001233118.1| non-specific serine/threonine protein kinase [Geobacter
            uraniireducens Rf4]
 gi|146399912|gb|ABQ28545.1| Non-specific serine/threonine protein kinase [Geobacter
            uraniireducens Rf4]
          Length = 1164

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-IIE-KANAAPIIVAYHFNSDLA 82
            + +  ++  Q+   A          +    K + L   ++E +      +V   F S L 
Sbjct: 968  ALTAILRLRQICLSAALVTAG---VKGESPKQECLADNLLELRDEGHSALVFSQFTSYLD 1024

Query: 83   RLQKAFPQGRT----------LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++   Q             + +    ++++ + + P +      + G GLNL      
Sbjct: 1025 LVEEGLKQRGLATLRLDGSTPVPRRKELVRQFQQSEEPLVFLISLKAGGKGLNLTR-ATY 1083

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+     Q  +R       + G    V V  L+ ++T++E ++     K  + 
Sbjct: 1084 VYHLDPWWNPAVENQASDR-----AHRIGQTAQVTVNRLLMRHTVEEKMMALKERKLKLY 1138

Query: 192  DLLLN 196
              LL+
Sbjct: 1139 RALLD 1143


>gi|253564436|ref|ZP_04841893.1| Snf2 family helicase [Bacteroides sp. 3_2_5]
 gi|251948212|gb|EES88494.1| Snf2 family helicase [Bacteroides sp. 3_2_5]
 gi|301161233|emb|CBW20771.1| putative SNF family helicase [Bacteroides fragilis 638R]
          Length = 1016

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ- 85
            ++  QL+        +         K+  +    E  ++    +++   F   L  +  
Sbjct: 828 ILRLRQLSCHPQLVLPD---FIGDSGKLYQIIETFETLRSEGHKVLIFSSFVKHLELVAG 884

Query: 86  --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    AF  G + ++     +   + KI        + G GLNL     + +    
Sbjct: 885 EFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLKAGGVGLNLTQADYVFI-IDP 943

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G    V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 944 WWNPAAESQAIAR-----AHRIGQNNQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 996


>gi|160901778|ref|YP_001567359.1| non-specific serine/threonine protein kinase [Petrotoga mobilis SJ95]
 gi|160359422|gb|ABX31036.1| Non-specific serine/threonine protein kinase [Petrotoga mobilis SJ95]
          Length = 1152

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 20/184 (10%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
                    Q+ N  V Y ++         K + L  +++    N   +++   +      
Sbjct: 952  LKMLTSLKQICNHPVNYTKKGVPLPDDSGKTEKLLDLLQNIVDNNEKVVLFTQYKEMGDI 1011

Query: 84   LQK-----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNI 131
            L K            F  G    K    I ++    + P++     + G GLNL    N 
Sbjct: 1012 LTKILADNIKIEPLFFHGGLNRKKRDKMINDFQTKHRYPIMILSLKAGGTGLNLT-AANH 1070

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ + LWW+     Q  +R       + G  + V V+  I   T +E + + L  K  + 
Sbjct: 1071 VIHYDLWWNPAVESQATDRTF-----RIGQTKDVIVHRFITLETFEEKINEMLEKKKELS 1125

Query: 192  DLLL 195
            + ++
Sbjct: 1126 ENII 1129


>gi|228904537|ref|ZP_04068620.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
 gi|228855101|gb|EEM99677.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
          Length = 413

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 229 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGS------------YNEHKLQYIKD 276

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IE  N   II+ Y+F  +   L     +   T++ D   +  + +    +      +  
Sbjct: 277 LIESTNDR-IIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGA 335

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +V+F+L    E  +Q  +R       + G KR  F YYL+   +I+  +
Sbjct: 336 MGLNLQK-ANKIVYFTLTDKSELFEQSKKR-----THRIGQKRPCFYYYLLTDGSIEWRM 389

Query: 181 LQRLRTKSTIQDLLLN 196
           L  L+ +    D L  
Sbjct: 390 LDVLKERRDYTDALFE 405


>gi|193712533|ref|XP_001943954.1| PREDICTED: putative DNA helicase Ino80-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1335

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+K L+ ++ K       +++       +  L++               
Sbjct: 1004 PDKQSLVTDCGKLKILDSLLTKLKQENHRVLIYSQMTRMIDILEEYMWYKKLRYMRLDGS 1063

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++ N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1064 SKISERRDMVADFQNRSDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1122

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+ 
Sbjct: 1123 -----AHRLGQTKQVTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTLK 1173


>gi|60679768|ref|YP_209912.1| SNF family helicase [Bacteroides fragilis NCTC 9343]
 gi|60491202|emb|CAH05950.1| putative SNF family helicase [Bacteroides fragilis NCTC 9343]
          Length = 1016

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ- 85
            ++  QL+     +  +         K+  +    E  ++    +++   F   L  +  
Sbjct: 828 ILRLRQLSCHPQLFLPD---FIGDSGKLYQIIETFETLRSEGHKVLIFSSFVKHLELVAG 884

Query: 86  --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    AF  G + ++     +   + KI        + G GLNL     + +    
Sbjct: 885 EFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLKAGGVGLNLTQADYVFI-IDP 943

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G    V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 944 WWNPAAESQAIAR-----AHRIGQNNQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 996


>gi|221106529|ref|XP_002167321.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 352

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QG 91
            ++        K+  L+ ++ +       +++       +  L++               
Sbjct: 32  PDRSTLASDSGKLLVLDKLLTRLKKEDHRVLIYSQMTKMIDILEEFMKFRKHSYMRLDGS 91

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +      + ++    I        + G G+NL    + ++F+   W+    QQ ++R 
Sbjct: 92  SKISDRRDMVSDFQSRDIFAFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR- 149

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G  + V VY L+ + T++E +L R R KS IQ+++++ 
Sbjct: 150 ----AHRLGQTKQVTVYRLVTKGTVEEKILNRAREKSEIQNIVISG 191


>gi|78186764|ref|YP_374807.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166666|gb|ABB23764.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 1006

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 36/224 (16%)

Query: 1   MKQYHKFQRE------LYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDEEKH 47
           MKQY    RE         D   E IE+           +  VK  Q+ N  V +  +  
Sbjct: 762 MKQYCTLTREQASLYKAVVDELQEKIESSEGIERRGMVLALLVKLKQVCNHPVQFLGDNS 821

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------ 93
                  K++ L  ++ +   ++   +V   F  ++  L +A  Q R             
Sbjct: 822 SVADRSGKLQRLLELLAEIRESSERTLVFTQFR-EMGSLLQAHLQERLGEEVFFLHGSLS 880

Query: 94  LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    I+ +  G     +      + G GLNL    + ++ +  WW+     Q  +R 
Sbjct: 881 RKKRDEMIEAFQNGDDAPRIFILSLKAGGSGLNLTKASH-VIHYDRWWNPAVENQATDR- 938

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 + G K  V V+  I   T++E + + +  K+T+   +L
Sbjct: 939 ----AFRIGQKHNVEVHKFITAGTLEERIDEMIEKKTTVSGTVL 978


>gi|311745326|ref|ZP_07719111.1| Snf2 family protein [Algoriphagus sp. PR1]
 gi|126577862|gb|EAZ82082.1| Snf2 family protein [Algoriphagus sp. PR1]
          Length = 974

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS------- 79
             +  Q+AN      ++    E    K++ +  +++   +    ++V   F         
Sbjct: 786 LTQLRQIANHPKMVRDD---YEGESGKLEDITYMLQSTISENHKVLVFSQFVRHLSIVKE 842

Query: 80  --DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             D   +  ++  G T D+            I +      + G GLNL      +     
Sbjct: 843 YLDKEGIPYSYLDGSTKDRQAQVEAFQENDDIKVFLISLKAGGVGLNLTK-AEYVFLLDP 901

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I+R       + G +  V +Y  I++N+++E ++     K  +   L+
Sbjct: 902 WWNPAVEAQAIDR-----AHRIGQENKVIIYKFISRNSVEEKIMALQNRKLALAGELI 954


>gi|329940611|ref|ZP_08289892.1| helicase [Streptomyces griseoaurantiacus M045]
 gi|329300672|gb|EGG44569.1| helicase [Streptomyces griseoaurantiacus M045]
          Length = 940

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANG-AVY-YDEEKHWKEVHDE--- 54
             Y    RE    ++     A             Q+ +  A+Y  ++    + + +    
Sbjct: 709 ALYEAVVRESMLAIETAEGMARRGMVLKLLTSLKQICDHPALYLKEDPATARALGERSGK 768

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQE 103
             +    +    +     +V   +      +                G  + +    +  
Sbjct: 769 LALLDELLDTLLSEDGSALVFTQYVGMARLITAHLAARAVPVDLLHGGTPVPERERMVDR 828

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + EG  P+L     + G GLNL   G+ +V    WW+    +Q  +R       + G  +
Sbjct: 829 FQEGATPVLVLSLKAAGTGLNLTRAGH-VVHVDRWWNPAVEEQATDR-----AYRIGQTQ 882

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V+ LI + T+++ +   LR K  + D +L
Sbjct: 883 PVQVHRLITEGTVEDRIDDMLRAKRALADAIL 914


>gi|118581141|ref|YP_902391.1| SNF2-related protein [Pelobacter propionicus DSM 2379]
 gi|118503851|gb|ABL00334.1| SNF2-related protein [Pelobacter propionicus DSM 2379]
          Length = 1164

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE-KANAAPIIVAYHFNSDLA 82
            + +  ++  Q+                   K+  L E + E +     ++V   F S L 
Sbjct: 969  ALTALLRLRQICLAPSLALPG---SSDSSPKLDFLVEQLAELRDEGHSVLVFSQFTSYLD 1025

Query: 83   RLQKAF-----PQGRTLDKDPCT-----IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++A      P  R     P       +Q +     P +      + G GLNL      
Sbjct: 1026 MVEEALKRHHLPNLRLDGSTPTPQRKRLVQGFQHSDSPLVFLISLKAGGKGLNLTR-ATY 1084

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+     Q  +R       + G  R V +  LI ++TI+E ++     K  + 
Sbjct: 1085 VYHLDPWWNPAVENQASDR-----AHRLGQTRQVTITRLIMRHTIEEKMMALKEQKQKLY 1139

Query: 192  DLLLN 196
              +L 
Sbjct: 1140 RAILE 1144


>gi|326772974|ref|ZP_08232258.1| SNF2/helicase domain protein [Actinomyces viscosus C505]
 gi|326637606|gb|EGE38508.1| SNF2/helicase domain protein [Actinomyces viscosus C505]
          Length = 1244

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT 100
               K++ L   +    +     +V   F   L+ +++             G T D+    
Sbjct: 1053 PSAKVEVLVEHLGPILSEGHRALVFSQFTRYLSGVREHLEATGVRTAYMDGSTPDRQ-KV 1111

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  +  G+  +      + G GL L    + +     WW+ +  +Q ++R       + G
Sbjct: 1112 IDAFRAGEADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAVDR-----THRIG 1165

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + V VY L++ +TI+E V+     K+ +   ++
Sbjct: 1166 QDKPVMVYRLVSADTIEEKVMALKEKKAELFARVV 1200


>gi|328718561|ref|XP_003246514.1| PREDICTED: putative DNA helicase Ino80-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1314

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+K L+ ++ K       +++       +  L++               
Sbjct: 1004 PDKQSLVTDCGKLKILDSLLTKLKQENHRVLIYSQMTRMIDILEEYMWYKKLRYMRLDGS 1063

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +    + ++ N   I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1064 SKISERRDMVADFQNRSDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1122

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
                   + G  + V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+ 
Sbjct: 1123 -----AHRLGQTKQVTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTLK 1173


>gi|298242061|ref|ZP_06965868.1| SNF2-related protein [Ktedonobacter racemifer DSM 44963]
 gi|297555115|gb|EFH88979.1| SNF2-related protein [Ktedonobacter racemifer DSM 44963]
          Length = 1068

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 23/210 (10%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y    +E+   +             S  ++  Q+ N   ++  ++        K+  LE
Sbjct: 837  LYDAVVKEMLEKIDDAKGIERKGMILSALLRLKQVCNHPAHFMGDESALGKRSGKVLRLE 896

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE- 106
             ++E+  A     ++   F      L++   +           G         +  + + 
Sbjct: 897  EMLEEVLAEGDKALIFTQFAEMGQLLRRHLQEQLGREVLFLHGGTPKKVRDQLVTRFQDE 956

Query: 107  -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL      + G GLNL    N +  F  WW+     Q  +R       + G  R V
Sbjct: 957  RDDAPLFLLSLKAGGVGLNLT-AANHVFHFDRWWNPAVENQATDR-----AFRIGQHRNV 1010

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V+  +   T++E +   + +K  + + ++
Sbjct: 1011 QVHKFVCVGTLEERIDAMIESKKALAENII 1040


>gi|329927070|ref|ZP_08281440.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328938698|gb|EGG35076.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 1030

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA--VYYDEEKHWKEVHDEKIK 57
              Y     E+   ++     A      +   K  Q+ +    +  D+ +  +     K++
Sbjct: 801  AMYQAVVDEMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDDGRAVRPESSGKME 860

Query: 58   ALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQ------GRTLDKDPCTIQEW 104
             +  I++         ++   +      L     +K   Q      G    +    ++ +
Sbjct: 861  RMLEILDSIADVGESALIFTQYVGMGELLVSMLGRKYGKQPYFLHGGVQKRERDEMVRAF 920

Query: 105  NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              G+          + G GLNL    N ++ +  WW+     Q  +R+      + G  R
Sbjct: 921  QAGEGTEFFVLSLKAGGVGLNLTR-ANHVLHYDRWWNPAVENQATDRVF-----RIGQNR 974

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V+ LI+Q T++E + + +  K  + + ++
Sbjct: 975  NVQVHKLISQGTLEERIDELIEQKKALSEQVV 1006


>gi|227496410|ref|ZP_03926698.1| helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834062|gb|EEH66445.1| helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1213

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTI 101
               K++ L   +    A     +V   F   L+ +++                      +
Sbjct: 1020 PSAKVEMLRDTLVPIVAEGHRALVFSQFTRYLSSVREELEAAGLRTLYLDGGTSDRQRVV 1079

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             ++ +G+  +      + G GL L    + +     WW+ +  +Q ++R       + G 
Sbjct: 1080 AQFRDGEADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAVDR-----AHRIGQ 1133

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V VY ++A +TI++ V+     K+ +   ++  
Sbjct: 1134 DKPVMVYRMVAADTIEDKVMALKEKKAGLFAKVVEG 1169


>gi|261404584|ref|YP_003240825.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261281047|gb|ACX63018.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 1033

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA--VYYDEEKHWKEVHDEKIK 57
              Y     E+   ++     A      +   K  Q+ +    +  D+ +  +     K++
Sbjct: 801  AMYQAVVDEMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDDGRAVRPESSGKME 860

Query: 58   ALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQ------GRTLDKDPCTIQEW 104
             +  I++         ++   +      L     +K   Q      G    +    ++ +
Sbjct: 861  RMLEILDSIADVGESALIFTQYVGMGELLVSMLGRKYGKQPYFLHGGVQKRERDEMVRAF 920

Query: 105  NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              G+          + G GLNL    N ++ +  WW+     Q  +R+      + G  R
Sbjct: 921  QAGEGTEFFVLSLKAGGVGLNLTR-ANHVLHYDRWWNPAVENQATDRVF-----RIGQNR 974

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V+ LI+Q T++E + + +  K  + + ++
Sbjct: 975  NVQVHKLISQGTLEERIDELIEQKKALSEQVV 1006


>gi|213406579|ref|XP_002174061.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212002108|gb|EEB07768.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 1603

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  L+ ++ +  AN   ++V +     +  +++                 + +   
Sbjct: 1425 DSGKLSKLDKLLAELKANDHRVLVYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1484

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + EW     + +      + G G+NL    + +VF+   W+     Q ++R       +
Sbjct: 1485 MVSEWQTRPDLFVFLLSTRAGGLGINLT-AADTVVFYDSDWNPSIDSQAMDR-----AHR 1538

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G ++ V VY  I + TI+E ++ R + K  +Q ++++  +  
Sbjct: 1539 IGQQKQVTVYRFITKGTIEERIVHRAKEKEEVQKVVISGGESR 1581


>gi|162451641|ref|YP_001614008.1| SWF/SNF family helicase [Sorangium cellulosum 'So ce 56']
 gi|161162223|emb|CAN93528.1| SWF/SNF family helicase [Sorangium cellulosum 'So ce 56']
          Length = 1011

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S      Q+ N       E         K+  L  ++E+A       +V   F     R
Sbjct: 794 LSLLTVLKQICNHPAQCLGEAGPLAGRSGKLARLTEMLEEALAAGDRALVFTQFREMGDR 853

Query: 84  LQKA----------FPQGRT--LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGN 130
           L +           F  G T  L +D    +  ++ + P +      + G GLNL    +
Sbjct: 854 LVRHLAPSLDAEVLFLHGGTPRLARDEMVRRFQDDPRGPHVFVLSLKAGGAGLNLT-AAS 912

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +  F  WW+     Q  +R       + G +RAV V+ L+   T++E V + L  K  +
Sbjct: 913 HVFHFDRWWNPAVEDQATDR-----AHRIGQRRAVQVHKLVCAGTVEEKVDRMLEQKRDL 967

Query: 191 QDLLL 195
              ++
Sbjct: 968 AAQVV 972


>gi|118722509|gb|ABL09965.1| helicase [Streptomyces echinatus]
          Length = 1011

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 28/195 (14%)

Query: 24  NSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAY 75
           N      +  Q+ N    +    D +         K++     L  ++     A +   Y
Sbjct: 798 NVLRLLTRLKQICNHPAQFLGEEDTDAGRLAGRSGKLERATEMLGEVVASGERALVFTQY 857

Query: 76  HFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHG 122
               DL           AR+        T  +D   ++ + E     PLL     + G G
Sbjct: 858 RVMGDLLARHLSGELGLARVPFLHGGTPTEHRDR-MVRAFQEDDDAPPLLLISLKAGGFG 916

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    +++  +  WW+     Q  +R       + G  + V V+ L+  +T +E +  
Sbjct: 917 LNLTRASHVM-HYDRWWNPAVEDQATDR-----AHRIGQTKTVLVHKLVTADTFEERIDA 970

Query: 183 RLRTKSTIQDLLLNA 197
            L++K ++ D ++ A
Sbjct: 971 LLQSKRSLADAVVGA 985


>gi|171909776|ref|ZP_02925246.1| SNF2-related protein [Verrucomicrobium spinosum DSM 4136]
          Length = 916

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y +    L  +L     +        +  +K  Q+ N    +  +  +      K + 
Sbjct: 681 QLYQRVVTALARELGDTEDQIQRQGVILAALMKLKQICNHPSQWSGDSRYLPADSGKFQR 740

Query: 59  LEVIIEKANAA--PIIVAYHFN-------SDLARLQKA----FPQGRTLDKDPCTIQEWN 105
           LE +          +IV   F          LA +          G  + K    ++E+ 
Sbjct: 741 LEELCSGIADRQEKVIVFTQFKEMTLPVADYLATVFGRPGLVLHGGTAVGKRGQLVEEFQ 800

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G  P       + G GL L    + ++ F  WW+     Q  +R       + G  +A
Sbjct: 801 SPGGPPFFVISVKAGGTGLTLT-AASHVIHFDRWWNPAVEDQATDR-----AYRIGQTKA 854

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  + Q T++E +   +R K  + + +L  
Sbjct: 855 VMVHKFVCQGTLEEKIDGIIREKRALANEILGG 887


>gi|92118340|ref|YP_578069.1| SNF2-related [Nitrobacter hamburgensis X14]
 gi|91801234|gb|ABE63609.1| SNF2-related protein [Nitrobacter hamburgensis X14]
          Length = 902

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 26/211 (12%)

Query: 7   FQRELYCDLQG--ENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             ++   +L G  E ++         +  ++  Q+ N    +  +  W E    K+  L 
Sbjct: 667 LYQQAVAELAGHLEEVDGIKRRGIVLAFLMRLKQICNHPSQWLGDGAWNEEDSGKLGRLR 726

Query: 61  VIIE--KANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEWNE 106
            I E   A     +V   F    A L                 +     +     Q   +
Sbjct: 727 DIAEVVAARQEKALVFTQFKETTAPLLAFLGSVFGRPGLVLHGETEVKKRKDLVRQFQED 786

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +P       + G GLNL    + ++ F  WW+     Q  +R       + G  + V 
Sbjct: 787 EDVPFFVLSVKAGGTGLNLT-AASHVIHFDRWWNPAVENQATDR-----AFRVGQTKNVL 840

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  + + T++E +   + +K  +    L+ 
Sbjct: 841 VHKFLCRGTVEEKIDHMIESKKQLAGDFLSG 871


>gi|186474348|ref|YP_001863319.1| non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
 gi|184198307|gb|ACC76269.1| Non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
          Length = 892

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +  ++L   L+G +         S  ++  Q+ N    +  +  W      K   L
Sbjct: 659 ALYERAVKDLAAALEGADGIERKGIVLSYLMRFKQICNHPSQWLGDAAWSPEASGKFGRL 718

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
             +++   A    ++V   F      L                 G  + K    ++++ E
Sbjct: 719 RELVDVMAAKQEKVLVFTQFRETTEPLAAFLGSLFGREGLILHGGTAVGKRRELVRQFQE 778

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  P       + G GLNL    + ++ F  WW+     Q  +R       + G ++ V
Sbjct: 779 DESTPFFVLSLKAGGSGLNLT-AASHVIHFDRWWNPAVENQATDR-----AFRIGQRKNV 832

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  + Q T+++ + Q + +K  + + +L  
Sbjct: 833 LVHKFVCQGTVEDRIDQLIESKQQLVNDMLEG 864


>gi|326797956|ref|YP_004315775.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326548720|gb|ADZ77105.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 1121

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 24/214 (11%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y  +++E          E +   ++      ++  Q+ N  +   + K+    +  KI
Sbjct: 897  RIYDVYEKEFRSYISAQTEEELSNKSAVVLKGLMRLRQICNSPLLLKD-KYSNVPNAAKI 955

Query: 57   KAL-EVIIEKANAAPIIVAYHFNSDLARLQ-KAFPQG----------RTLDKDPCTIQEW 104
            + L E I +++    I++   +   L  ++ +   QG          +  D++    Q  
Sbjct: 956  EWLIEEIGQRSVQHKILLFSQYVHMLDLVEDQLHKQGLQTLKMTGSTKVKDREGLIEQFK 1015

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +G++ +        G GLNL    + +     WW+     Q I+RI      + G K+ 
Sbjct: 1016 LDGRVKVFLMSLKVGGVGLNLTE-ADYVYLIDPWWNPAVEDQAIDRI-----YRMGQKKN 1069

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            V    LI + TI+E VLQ  ++KS +   L++++
Sbjct: 1070 VIAVRLICKETIEEKVLQLQQSKSELFTKLIDSI 1103


>gi|254445212|ref|ZP_05058688.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259520|gb|EDY83828.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 917

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +   EL  DL+            T  ++  Q+ N       +  +K     K   L
Sbjct: 687 ALYKRTVEELAKDLREVEGIQRRGLVLTYLMRFKQICNHPSQALGDNGYKPDASGKFTRL 746

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
           + + E   A    +++   F    A + +               G  + +    +  +  
Sbjct: 747 QELCEDIAARQEKVLIFTQFREMTAPIAQHLATIFGREGLVLHGGTPVAQRKALVDSFQS 806

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               P       + G GL L    + ++ F  WW+     Q  +R       + G K+ V
Sbjct: 807 PDGPPFFVLSLKAGGSGLTLT-AASHVIHFDRWWNPAVENQATDR-----AYRIGQKKNV 860

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I++ TI+E V   +++K  +   LL  
Sbjct: 861 LVHKFISRGTIEEKVDTLIQSKLALSTELLKG 892


>gi|253699069|ref|YP_003020258.1| SNF2-related protein [Geobacter sp. M21]
 gi|251773919|gb|ACT16500.1| SNF2-related protein [Geobacter sp. M21]
          Length = 901

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 69/212 (32%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +  ++L   L+ +              +  Q+ N       +  +   +  K   L
Sbjct: 669 ALYRQGVQDLARSLKEKAGMERRGLVLAALTRFKQICNHPSQALGDGEYGAGNSGKYDRL 728

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
             I E+  +    ++V   F     +L                 G  + +    +  +  
Sbjct: 729 REICEEIESRGEKVLVFSQFKEMALQLTSFLGTVFGRSGLVLHGGTPVAERQRIVDRFQH 788

Query: 107 GKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              P        + G GLNL    + ++ F  WW+     Q  +R       + G KR V
Sbjct: 789 EDGPPFLVLSLKAGGTGLNLT-AASQVIHFDRWWNPAVENQATDR-----AFRIGQKRNV 842

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  + + T++E +   +  K+ +   +L  
Sbjct: 843 LVHKFVCRGTVEEKIDALIAEKTRLAVDILEG 874


>gi|297696366|ref|XP_002825369.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA helicase INO80 complex
            homolog 1-like [Pongo abelii]
          Length = 1537

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                 RL  +    +  ++        N   I +      + G G+NL    + ++F+  
Sbjct: 1122 KHTYMRLDGS---SKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLT-AADTVIFYDS 1177

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+    QQ ++R       + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1178 DWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1232

Query: 198  --LKKETIH 204
               K +T+ 
Sbjct: 1233 GNFKPDTLK 1241


>gi|296186183|ref|ZP_06854588.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|296049451|gb|EFG88880.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1034

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 29   TVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
              K  Q+  + ++ +DE K      + K+K    ++++   +   +++   F S L ++ 
Sbjct: 839  LTKLRQICLDPSIIFDEYK----GGNGKLKVALSLVKEHITSDGKVLLFSQFTSVLKKIG 894

Query: 86   KAFPQ---------GRTLDKDP-CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +A  +         G T  K+    + E+N   K+ +      + G GLNL    N+++ 
Sbjct: 895  EALKEDDIEYFYLDGSTKSKERIKLVNEFNSCTKVKVFLISLKAGGTGLNLT-SANLVIH 953

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            F  WW+     Q  +R       + G K  V V  L+A+ TI+E ++     K  +
Sbjct: 954  FDPWWNPAVEDQATDR-----AHRIGQKNVVEVIKLVARGTIEEKIILLQEHKKEL 1004


>gi|298490375|ref|YP_003720552.1| SNF2-like protein ['Nostoc azollae' 0708]
 gi|298232293|gb|ADI63429.1| SNF2-related protein ['Nostoc azollae' 0708]
          Length = 1072

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 23/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y +   E   +++            +  +K  Q+ N    Y +E    + +  K++ L
Sbjct: 836  QLYQQLVDESLVEIESAEGLQRRGMILALLIKLKQICNHPAQYLKESSLAKHNSAKLQRL 895

Query: 60   EVIIEK--ANAAPIIVAYHF-------NSDLARLQKA---FPQGRT-LDKDPCTIQEW-N 105
            E ++E+  A     ++   F          L +       F  G T  ++    I  + N
Sbjct: 896  EEMLEEVLAEENRALIFTQFAEWGKLLKPYLEKQLGREILFLYGSTSKNQREEIIDRFQN 955

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P ++     + G GLNL    N +  F  WW+     Q  +R+      + G  + 
Sbjct: 956  DPQGPRIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RIGQTKN 1009

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   T++E +   + +K  +   ++ A
Sbjct: 1010 VQVHKFVCTGTVEEKINDMIESKKQLAQQVVGA 1042


>gi|255523219|ref|ZP_05390190.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|255513087|gb|EET89356.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
          Length = 1005

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 29  TVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
             K  Q+  + ++ +DE K      + K+K    ++++   +   +++   F S L ++ 
Sbjct: 810 LTKLRQICLDPSIIFDEYK----GGNGKLKVALSLVKEHITSDGKVLLFSQFTSVLKKIG 865

Query: 86  KAFPQ---------GRTLDKDP-CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +A  +         G T  K+    + E+N   K+ +      + G GLNL    N+++ 
Sbjct: 866 EALKEDDIEYFYLDGSTKSKERIKLVNEFNSCTKVKVFLISLKAGGTGLNLT-SANLVIH 924

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           F  WW+     Q  +R       + G K  V V  L+A+ TI+E ++     K  +
Sbjct: 925 FDPWWNPAVEDQATDR-----AHRIGQKNVVEVIKLVARGTIEEKIILLQEHKKEL 975


>gi|254412572|ref|ZP_05026346.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
 gi|196180882|gb|EDX75872.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
          Length = 1061

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             Y    +++   L+            +  +K  Q+ N  A +  +   +      K++ L
Sbjct: 830  LYEAVVKDVEAKLEDAEGINRKGLILSTLLKLKQVCNHPAQFLQDNSEFSPTRSHKLERL 889

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNE 106
              +IE+  A    +++   F    + L     Q    +           K    I  + +
Sbjct: 890  LEMIEEVNAEGESLLIFTQFTDIGSALTNYLKQTLHYNTYYIHGGISRAKREQMITAFQD 949

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                         + G G+ L    N +  F  WW+     Q  +R       + G K+ 
Sbjct: 950  PDTEPSAFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQKKN 1003

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VFV+  +A  T++E + Q +  K  +   ++ A
Sbjct: 1004 VFVHKFVALGTLEERIDQMIEEKKKLSGAIVGA 1036


>gi|281355238|ref|ZP_06241732.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
 gi|281318118|gb|EFB02138.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
          Length = 884

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 22/207 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +RE   +   E  +        ++  QL N    Y  E  +K     K   L  + E
Sbjct: 659 DRMRRE--LEAADEFQKKGVVLKSLMQFKQLCNHPAQYTGEGDFKAEESGKFLELAELAE 716

Query: 65  --KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IP 110
                   ++V   F      L +   +           G ++      ++ + + +  P
Sbjct: 717 KIAMKQEKVLVFTQFREMTDPLHELLSRVFGRPGLILHGGTSIRARARLVEAFQKEEGPP 776

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G GLNL    + ++ F  WW+     Q  +R       + G  R V V+  
Sbjct: 777 FFVLSLKAAGTGLNLT-AASHVIHFDRWWNPAVENQATDR-----AYRIGQHRNVLVHKF 830

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I   TI+E +   + +K  + D ++ +
Sbjct: 831 ICSGTIEEKINSLIWSKRKLADSVVTS 857


>gi|321460021|gb|EFX71068.1| hypothetical protein DAPPUDRAFT_309233 [Daphnia pulex]
          Length = 1322

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 18/208 (8%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G+N+    +A    K  Q  +  +  D  K        K++ L+ ++ +  +   
Sbjct: 1086 CASAEGKNLILCGAAEVLAKPKQGWSNVILPD--KETLICDAGKLQVLDALLRRLKSEGH 1143

Query: 70   PIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
             +++       +  L++                 +      + ++     I +      +
Sbjct: 1144 RVLIYSQMTRIIDLLEEYMWHRKWTYMRLDGSSKISDRRDMVADFQTRSDIFVFLLSTRA 1203

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G G+NL    + ++F+   W+    QQ ++R     Q +   +  V VY LI + TI+E
Sbjct: 1204 GGLGINLT-AADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQAREHIVTVYRLICKGTIEE 1262

Query: 179  LVLQRLRTKSTIQDLLLNA--LKKETIH 204
             +LQR R KS IQ ++++    K +T+ 
Sbjct: 1263 RILQRAREKSKIQKIVISGGNFKPDTLK 1290


>gi|20089087|ref|NP_615162.1| SNF2 family helicase [Methanosarcina acetivorans C2A]
 gi|19913949|gb|AAM03642.1| helicase (SNF2 family) [Methanosarcina acetivorans C2A]
          Length = 1078

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S   +  Q+ N    + ++         K+  L  +++    N    +V   F      
Sbjct: 872  LSALTRLKQVCNHPAQFLKDNSAVPGRSGKLARLTEMLDVILENGEKALVFTQFAEMGKM 931

Query: 84   LQKAFP-----------QGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
            L++               G    +    ++ + EGK  +P+      + G GLNL  G N
Sbjct: 932  LKEHLQASFGCEVLFLHGGVPRKQRDRMLERFQEGKEYLPIFVLSLKAGGTGLNLT-GAN 990

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +  F  WW+     Q  +R       + G  + V V+  I   T++E + + +  K  +
Sbjct: 991  HVFHFDRWWNPAVENQATDR-----AFRIGQTKNVEVHKFICAGTLEEKIDEIIERKVQV 1045

Query: 191  QDLLL 195
             + ++
Sbjct: 1046 AENVV 1050


>gi|302794564|ref|XP_002979046.1| hypothetical protein SELMODRAFT_444050 [Selaginella moellendorffii]
 gi|300153364|gb|EFJ20003.1| hypothetical protein SELMODRAFT_444050 [Selaginella moellendorffii]
          Length = 1426

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDP 98
               K++AL+++  +  A    ++V       L  L+      +            +D+  
Sbjct: 1132 DSGKLQALDILFRRLRAEEHRVLVFAQMTKMLNILEDYMKYRKYKYLRLDGSSTIMDRRD 1191

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +   I +      + G G+NL    + ++F+   W+     Q ++R       +
Sbjct: 1192 MVKDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTMDLQAMDR-----AHR 1245

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G  + V VY LI + T++E +++R   K+T+Q L++   + + +
Sbjct: 1246 LGQTKEVTVYRLICKGTVEEKIVKRANQKNTVQQLVMTGGQSQDV 1290


>gi|291005462|ref|ZP_06563435.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 959

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    R +  +       A             Q+ N   ++  +         K++   
Sbjct: 729 LYRATVRGMLDEQGMGEGIARRGRILKLLTALKQICNHPAHFLRQPGPLHGRSGKLERTA 788

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCTIQEWNE 106
            ++ +  A     +V   +      L                  G +  +    ++E+  
Sbjct: 789 EMLSEVVAAGDRALVFTQYRVMGELLAGHLAAELELPAVPFLHGGVSAARRSRMVEEFQH 848

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P+L     + G GLNL    + +V +  WW+     Q  +R       + G  R 
Sbjct: 849 SDDAAPVLVVSLKAGGTGLNLTRATH-VVHYDRWWNPAVEDQATDR-----AHRIGQTRG 902

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V+ L+   T++E +   L  K  + D ++
Sbjct: 903 VHVHKLVTHGTLEERIADLLDCKRGLADAVV 933


>gi|134099632|ref|YP_001105293.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912255|emb|CAM02368.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 956

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    R +  +       A             Q+ N   ++  +         K++   
Sbjct: 726 LYRATVRGMLDEQGMGEGIARRGRILKLLTALKQICNHPAHFLRQPGPLHGRSGKLERTA 785

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCTIQEWNE 106
            ++ +  A     +V   +      L                  G +  +    ++E+  
Sbjct: 786 EMLSEVVAAGDRALVFTQYRVMGELLAGHLAAELELPAVPFLHGGVSAARRSRMVEEFQH 845

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P+L     + G GLNL    + +V +  WW+     Q  +R       + G  R 
Sbjct: 846 SDDAAPVLVVSLKAGGTGLNLTRATH-VVHYDRWWNPAVEDQATDR-----AHRIGQTRG 899

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V+ L+   T++E +   L  K  + D ++
Sbjct: 900 VHVHKLVTHGTLEERIADLLDCKRGLADAVV 930


>gi|301062656|ref|ZP_07203283.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300443246|gb|EFK07384.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 895

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y K  +++     + +G   +     S  +K  Q+ N    Y     ++E    K + L
Sbjct: 669 LYGKLVQDIRGSILETEGIERKGM-ILSSLMKFKQICNHPDQYLGAGGFEEKESGKFQRL 727

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNE 106
             I          ++V   F      L                    + K    I+++  
Sbjct: 728 RDICTTIYEKREKVLVFTQFKEMTQPLHDFLEDVFHGKGLILHGSVAVGKRKKIIEQFQS 787

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P +     + G GLNL    N ++ F  WW+     Q  +R       + G K+ V
Sbjct: 788 PGYVPFMVLSLKAGGIGLNLTE-ANHVIHFDRWWNPAVENQATDR-----AFRIGQKKNV 841

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+  + Q T++E +   L  KS +   ++
Sbjct: 842 VVHKFLTQGTVEEKIDAMLEEKSRLSREVI 871


>gi|258404421|ref|YP_003197163.1| SNF2-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257796648|gb|ACV67585.1| SNF2-related protein [Desulfohalobium retbaense DSM 5692]
          Length = 1062

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 28/217 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK------TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +      +     E   + SK       ++  Q+A           ++     K
Sbjct: 839  KLYSEIRDHYRAQVLSRVEEKGLAQSKMHVLEGLLRLRQVACHPKLVGGNGQYE---SGK 895

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQE 103
            ++ L   I     +    +V   F   L  ++              GRT  K     +  
Sbjct: 896  LQELRERITAVVGSGHKALVFSQFTRFLRLIKDMLESEGIAYCSLDGRTPAKRRQERVAR 955

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +    P+      + G GLNL    + +     WW+     Q ++R       + G  
Sbjct: 956  FQDVDGPPVFTISLKAGGTGLNLT-AADYVFIADPWWNPAVEMQAVDR-----THRIGQD 1009

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + VF Y  + + T++E +      K  +   +L+  K
Sbjct: 1010 KTVFTYRFVTEGTVEEKIRTLQNQKQELVQSVLSGSK 1046


>gi|224543399|ref|ZP_03683938.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523686|gb|EEF92791.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
          Length = 856

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 22/205 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +   +L  + +G             +  Q+ N    +  + ++      K   L+ + E 
Sbjct: 635 EKAEDLILESEGMERRGI-VLGLLTRLKQICNHPDQFIHDTNFNPKDSGKYAMLKKLCET 693

Query: 66  --ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGK--IP 110
                  ++V   +      L                 G    K    ++++N     +P
Sbjct: 694 IYEKRERVLVFTQYKEMCEPLSDYLESIFHKKGYIIHGGIPAKKRTEIVEKFNNEDEYVP 753

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +     + G GLNL    N ++ F  WW+     Q  +R       + G  + VFV+ L
Sbjct: 754 YIVLSLKAAGTGLNLT-AANHVIHFDRWWNPAVENQASDR-----AYRIGQTKEVFVHKL 807

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           ++  TI+E + Q + +K  + + +L
Sbjct: 808 VSNGTIEEKINQIIESKQELAESIL 832


>gi|182414357|ref|YP_001819423.1| non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
 gi|177841571|gb|ACB75823.1| Non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
          Length = 922

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 20/183 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +   +  Q           K        KI  L   + +  ++   +++   F   L R
Sbjct: 709 LALLTRLRQTCCDPDMLPWLKSPLA-DSGKIALLMEKLAEVVSSGHKVVIFSQFVMFLDR 767

Query: 84  LQ----KAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           ++    + FP+       G TLD+     Q  N     ++     + G G+ L +  + +
Sbjct: 768 VRAALNERFPELPHFELTGMTLDRLKPVQQFQNAPGAAVMLVSLKAAGTGITL-HAADYV 826

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                WW+     Q ++R+      + G    VFVY ++   TI+E +      K  + +
Sbjct: 827 FLLDPWWNPAVEAQAVDRV-----HRIGQTNTVFVYRMVTAGTIEERIQALKEEKRDLFE 881

Query: 193 LLL 195
            L+
Sbjct: 882 KLV 884


>gi|70998570|ref|XP_754007.1| SNF2 family helicase/ATPase (Ino80) [Aspergillus fumigatus Af293]
 gi|74672951|sp|Q4WTV7|INO80_ASPFU RecName: Full=Putative DNA helicase ino80
 gi|66851643|gb|EAL91969.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus fumigatus
            Af293]
          Length = 1708

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1414 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1473

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1474 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1527

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1528 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|159126257|gb|EDP51373.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus fumigatus
            A1163]
          Length = 1708

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1414 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1473

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1474 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1527

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1528 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|302819699|ref|XP_002991519.1| hypothetical protein SELMODRAFT_429809 [Selaginella moellendorffii]
 gi|300140721|gb|EFJ07441.1| hypothetical protein SELMODRAFT_429809 [Selaginella moellendorffii]
          Length = 1426

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDP 98
               K++AL+++  +  A    ++V       L  L+      +            +D+  
Sbjct: 1132 DSGKLQALDILFRRLRAEEHRVLVFAQMTKMLNILEDYMKYRKYKYLRLDGSSTIMDRRD 1191

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +   I +      + G G+NL    + ++F+   W+     Q ++R       +
Sbjct: 1192 MVKDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTMDLQAMDR-----AHR 1245

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G  + V VY LI + T++E +++R   K+T+Q L++   + + +
Sbjct: 1246 LGQTKEVTVYRLICKGTVEEKIVKRANQKNTVQQLVMTGGQSQDV 1290


>gi|326479960|gb|EGE03970.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1688

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1399 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1458

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1459 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1512

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1513 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1553


>gi|326468559|gb|EGD92568.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1686

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1397 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1456

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1457 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1510

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1511 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1551


>gi|315048299|ref|XP_003173524.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma gypseum CBS 118893]
 gi|311341491|gb|EFR00694.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma gypseum CBS 118893]
          Length = 1692

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1403 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1462

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1463 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1516

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1517 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1557


>gi|124007753|ref|ZP_01692456.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
 gi|123986875|gb|EAY26647.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
          Length = 1207

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 20/183 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
                  Q+ N   +Y +  H       K + L  +++    N    ++   +      L 
Sbjct: 1008 LMNALKQICNHPSHYLKHAHLDPGQSGKTQLLLSLLDNIYENGEKTLIFTQYREMGDLLL 1067

Query: 86   KAFPQ-----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
                Q           G +  K    ++++ N+  +  +     + G GLNL    N ++
Sbjct: 1068 PLLEQRYHNTPLWLHGGVSRKKRDQMVEDFQNKPHVKTMLLSLKAGGTGLNLTKASN-VI 1126

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + LWW+     Q  +R       + G +  V VY +I Q T +E +   ++TK  + DL
Sbjct: 1127 HYDLWWNPAVENQATDR-----AYRIGQQNNVMVYRMITQGTFEEKINAMIQTKKELADL 1181

Query: 194  LLN 196
             ++
Sbjct: 1182 TVS 1184


>gi|296445439|ref|ZP_06887396.1| SNF2-related protein [Methylosinus trichosporium OB3b]
 gi|296257005|gb|EFH04075.1| SNF2-related protein [Methylosinus trichosporium OB3b]
          Length = 890

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y     EL   L+  + +        +  ++  Q+ N    +  +  ++     K   
Sbjct: 655 ALYEVAVDELEQRLKQADDDIARRGLVLAMLMRLKQICNHPSQWLSDGAYEPAQSGKFAR 714

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWN 105
           L  I E   +    ++V   F   +A L++                  + K    ++++ 
Sbjct: 715 LAEIAETVASRQEKLLVFTQFKEIIAPLERLLASVFGRSGLVLHGDTPVAKRKDLVKKFQ 774

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E + IP       + G GL L    + +  F  WW+     Q  +R       + G KR 
Sbjct: 775 EDETIPFFVLSLKAGGSGLTLT-AASHVAHFDRWWNPSVENQATDR-----AFRIGQKRN 828

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  + + TI+E + Q + +K  +   +L  
Sbjct: 829 VLVHKFVCRGTIEERIDQLIESKRQLAQDVLGG 861


>gi|119498509|ref|XP_001266012.1| SNF2 family helicase/ATPase (Ino80), putative [Neosartorya fischeri
            NRRL 181]
 gi|206558086|sp|A1CZE5|INO80_NEOFI RecName: Full=Putative DNA helicase ino80
 gi|119414176|gb|EAW24115.1| SNF2 family helicase/ATPase (Ino80), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1708

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1414 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1473

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1474 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1527

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1528 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|38637840|ref|NP_942814.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527178|gb|AAP85928.1| putative helicase, superfamily II [Ralstonia eutropha H16]
          Length = 892

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +  ++L   L+  +         +  ++  Q+ N    +  +  WK     K   L
Sbjct: 659 ALYQRAVKDLAAALEDADGIGRKGVVLSYLMRFKQICNHPSQWLGDAAWKAEDSGKFARL 718

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
             + E   A    ++V   F      L                 G  + K    ++ + E
Sbjct: 719 RQLAEVIAAKQEKVLVFTQFRETTEPLAAFLGSIFGREGLVLHGGTPVAKRRELVKRFQE 778

Query: 107 GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            ++ P       + G GLNL    + ++ +  WW+     Q  +R       + G +R V
Sbjct: 779 DELTPFFVLSLKAGGAGLNLT-AASHVIHYDRWWNPAVENQATDR-----AFRIGQRRNV 832

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + T+++ + Q +  K  +   +L  
Sbjct: 833 LVHKFICRGTVEDRIDQLIEAKQQLVKDVLEG 864


>gi|50546160|ref|XP_500607.1| YALI0B07513p [Yarrowia lipolytica]
 gi|49646473|emb|CAG82840.1| YALI0B07513p [Yarrowia lipolytica]
          Length = 807

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGR--------- 92
           ++        K   LE ++   NA     I++  ++ + L  ++K   Q R         
Sbjct: 556 DRDIYPHFSAKFLILERMLRSINAETNDKIVIISNYTATLDLIEKMCRQRRYGCLRLDGT 615

Query: 93  -TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    + ++N  EG+  +      + G GLNL  G N L+     W+    QQ + 
Sbjct: 616 MNINKRAKLVTQFNDPEGQEFIFLLSSKAGGCGLNL-IGANRLILMDPDWNPAADQQALA 674

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY LIA  TI+E + QR   K ++   +++ ++    H
Sbjct: 675 RVW-----RDGQKKDCFVYRLIATGTIEEKIFQRQSMKQSLSTCVVDEVQDVERH 724


>gi|303245900|ref|ZP_07332182.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
 gi|302492683|gb|EFL52551.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
          Length = 755

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              ++ L  + +G   +    A+ + K  Q+ N    +  +         K+  L  ++E
Sbjct: 530 KDLEKTL-AEAEGIKRKGIILATLS-KLKQVCNHPAQFLGDNSAIADRSGKLSRLTEMLE 587

Query: 65  K--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE--GKI 109
           +        +V   F      L+    +           G T +     ++ +    G  
Sbjct: 588 EVVEAGDRALVFTQFKEMGDLLKTHLQETFGQELLFLHGGVTKNLRDKMVERFQSSAGAP 647

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P+      + G GLNL    N +  +  WW+     Q  +R       + G  + V V+ 
Sbjct: 648 PIFILSLKAGGTGLNLTN-ANHVFHYDRWWNPAVENQATDR-----AFRIGQHKNVLVHK 701

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +   T+++ +   +  K ++ + ++
Sbjct: 702 FLCVGTLEDKIDAMIEQKQSLANAVV 727


>gi|119510052|ref|ZP_01629192.1| SNF2-related helicase [Nodularia spumigena CCY9414]
 gi|119465239|gb|EAW46136.1| SNF2-related helicase [Nodularia spumigena CCY9414]
          Length = 1087

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y +       +++            +  VK  Q+ N    Y +    +E    K++ L
Sbjct: 851  ALYQQVVEASLVEIESAEGLQRRGMILALLVKLKQICNHPAQYLKAATLQEHSSAKLQRL 910

Query: 60   EVIIEKA--NAAPIIVAYHF----NSDLARLQKAFPQ-------GRTLDKDPCTIQEWNE 106
            + ++  A       ++   F        A LQ+   +       G +  +    I  +  
Sbjct: 911  DEMLTVALEEGDRALIFTQFAEWGKLLKAHLQQTLGKEIFFLYGGSSKKQREEMIDRFQH 970

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P++     + G GLNL    N +  F  WW+     Q  +R+      + G  R 
Sbjct: 971  DPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RIGQTRN 1024

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   T++E +   + +K  + + ++ A
Sbjct: 1025 VQVHKFVCTGTLEEKIHDMIESKKQLAEQVVGA 1057


>gi|149919942|ref|ZP_01908417.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149819215|gb|EDM78649.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1056

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 27/212 (12%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEV------ 51
            + Y   +   +E   +               ++  Q A   A+        ++       
Sbjct: 829  RTYDAVRAATQEQVVEQLSSGNNVLQVLEALLRLRQAACHRALLPGGSGRIEKDGGDPNA 888

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT 100
               K++ L   + +        +V   + + L  ++ A            G T D+    
Sbjct: 889  PSSKLQLLLDTLVQVVDTGHKALVFSQWTTLLDLVEPALKDAGLDFCRLDGSTRDRGGVV 948

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +  +    P++     + G GLNL    N +     WW+     Q  +R       + G
Sbjct: 949  ERFQDPAGPPVMIISLKAGGTGLNLTAADN-VFLLDPWWNPAVEDQAADR-----AHRIG 1002

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + V V+ LIA  T++E +L     K  + +
Sbjct: 1003 QDKPVIVHRLIASETVEERILALQDRKRKLAE 1034


>gi|160880712|ref|YP_001559680.1| non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
 gi|160429378|gb|ABX42941.1| Non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
          Length = 1069

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 80/209 (38%), Gaps = 29/209 (13%)

Query: 6    KFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAV-----YYDEEKHWKEVHDEKIKA 58
            + + ++Y ++  + IE       +   +  Q+          Y         + +   +A
Sbjct: 855  EVRNDIYSEIATKGIEKSQMKILAALTRLRQICCHPSTFLDEYDGGSGKLDLLLELIEEA 914

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
                   AN   I++   F S L  ++    +             + +    ++ +N G+
Sbjct: 915  ------LANDHRILIFSQFTSMLKIMEAELKKLSVSYFYLEGSTPITERNDFVKRFNAGE 968

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G + ++ +  WW+    +Q  +R+      + G K  V V 
Sbjct: 969  GSIFLISLKAGGTGLNL-VGADTVIHYDPWWNPAVEEQATDRV-----YRIGQKNNVHVI 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ +NTI+E + +  + K  + D ++ +
Sbjct: 1023 KLLTKNTIEEKIFKLQKKKKELSDSIIQS 1051


>gi|325299080|ref|YP_004258997.1| SNF2-like protein [Bacteroides salanitronis DSM 18170]
 gi|324318633|gb|ADY36524.1| SNF2-related protein [Bacteroides salanitronis DSM 18170]
          Length = 1168

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 20/183 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +   Q+ N    + +  + +     K + L   +E   AN   ++V   F      L +
Sbjct: 974  ILALKQICNHPAQFLKNGNARIELFGKAEMLLDRLEGIVANGEKVLVFTQFREMGDLLVR 1033

Query: 87   AFPQGR------------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
               +                 +     +  N     +      + G GLNL    + ++ 
Sbjct: 1034 FIEERLGQHPLFYHGGCCVKQRQEMVERFQNLRSDKIFILSLKAAGTGLNLT-AASHVIH 1092

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + LWW+     Q  +R       + G +R V V+  I ++T +E +   ++ K  + D+ 
Sbjct: 1093 YDLWWNPAVEAQATDR-----AYRIGQQRNVMVHRFITKDTFEERINDMIQQKKHLADMT 1147

Query: 195  LNA 197
            + +
Sbjct: 1148 VAS 1150


>gi|317138661|ref|XP_001817058.2| DNA helicase ino80 [Aspergillus oryzae RIB40]
          Length = 1690

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1395 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1454

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1455 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1508

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1509 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1549


>gi|150006238|ref|YP_001300982.1| helicase/SNF2 domain-containing protein [Bacteroides vulgatus ATCC
           8482]
 gi|149934662|gb|ABR41360.1| helicase with SNF2 domain [Bacteroides vulgatus ATCC 8482]
          Length = 762

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 20/205 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQL-ANGAVYYDEEKHWKEVHDEKIKAL 59
            Y K ++     +         S +    ++  Q   N ++          +   K    
Sbjct: 546 IYSKVRKTFLLAMSDGTSGRLTSIALEGLLRLRQCCVNTSLLPLSLSGKAIIDSSKFNFA 605

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGK 108
             +I+   +    +++   F S L  L K             G T ++        N+  
Sbjct: 606 IKLIKDFVSQNHKVLLFSQFTSALELLIKHPKLKELNPLILTGETRNRQTLVNTFQNDPS 665

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++     + G GLNL    + ++    WW+     Q   R       + G K  V VY
Sbjct: 666 ATVMMVSIKAGGTGLNLT-AADRVILLDDWWNPAVESQAFAR-----THRIGQKNDVKVY 719

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDL 193
            L+ ++T++E +L+  + K  + +L
Sbjct: 720 RLVCKDTVEEKILELHKNKEEMSEL 744


>gi|121712698|ref|XP_001273960.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus clavatus
            NRRL 1]
 gi|206558079|sp|A1C9W6|INO80_ASPCL RecName: Full=Putative DNA helicase ino80
 gi|119402113|gb|EAW12534.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1707

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1415 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1474

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                        I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1475 RDTVADFQQRPDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1528

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1529 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1569


>gi|240274086|gb|EER37604.1| DNA ATP-dependent helicase [Ajellomyces capsulatus H143]
          Length = 1764

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1465 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1524

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1525 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1578

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1579 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1619


>gi|115438288|ref|XP_001218028.1| hypothetical protein ATEG_09406 [Aspergillus terreus NIH2624]
 gi|121733988|sp|Q0CA78|INO80_ASPTN RecName: Full=Putative DNA helicase ino80
 gi|114188843|gb|EAU30543.1| hypothetical protein ATEG_09406 [Aspergillus terreus NIH2624]
          Length = 1690

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1395 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1454

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1455 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1508

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1509 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVITG 1549


>gi|297621841|ref|YP_003709978.1| putative SNF2-family protein [Waddlia chondrophila WSU 86-1044]
 gi|297377142|gb|ADI38972.1| putative SNF2-family protein [Waddlia chondrophila WSU 86-1044]
          Length = 1204

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 81/205 (39%), Gaps = 20/205 (9%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
             K +  L  +L  +   I   +  S      Q+ N  A Y      + +    K +  + 
Sbjct: 979  DKMRGNLIRELNDQTSPIPYLHVFSLLSSLKQICNHPAAYLKNPVDYDKYQSGKWELFKE 1038

Query: 62   IIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +I +A  +   ++V   + + L          R+  A  +G TLD+     +   + +  
Sbjct: 1039 LISEALESDQKVVVFSQYLAMLDIMQQYLDEQRIGYATIRGATLDRGEVVRRFNADSRCK 1098

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G++L    ++++ +  WW+     Q  +R+      + G +R V V+ L
Sbjct: 1099 VFLGSLQAAGLGIDLT-AASVVIHYDRWWNAAREDQATDRV-----HRIGQQRGVQVFKL 1152

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            +   T +E + + +  K  + + ++
Sbjct: 1153 VTLGTFEERIDEMITRKGRLMEEVI 1177


>gi|296809211|ref|XP_002844944.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma otae CBS 113480]
 gi|238844427|gb|EEQ34089.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma otae CBS 113480]
          Length = 1660

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1371 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1430

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1431 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1484

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1485 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1525


>gi|224368240|ref|YP_002602403.1| SNF2-related helicase [Desulfobacterium autotrophicum HRM2]
 gi|223690956|gb|ACN14239.1| SNF2-related helicase [Desulfobacterium autotrophicum HRM2]
          Length = 903

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 21/210 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M    K   +L C   G   +     S  VK  Q+ N    Y     +      K   L 
Sbjct: 676 MDFVKKLADKLECSDPGIQRKGL-VLSALVKFKQICNHPDQYLGTGDFIPKESGKFTRLM 734

Query: 61  VIIEKANAAP--IIVAYHFNSDLARLQKAFP-----QGRTL------DKDPCTIQEWN-E 106
            I    +A    ++V   F   +A L +        +G  +       K    I+E+  +
Sbjct: 735 EICATIHAKRERVLVFTQFKEMVAPLAEFLETVFHQKGHIIHGSLNVKKRHQAIEEFQGK 794

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP +     + G GLNL    N ++ F  WW+     Q  +R       + G  R V 
Sbjct: 795 AYIPFMVISLKAGGTGLNLTR-ANHVIHFDRWWNPAIENQATDR-----AFRIGQTRGVL 848

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+  I + TI+E +   +  K  + + +++
Sbjct: 849 VHKFITRGTIEEKIDLMIEKKKALTNQIIS 878


>gi|166363078|ref|YP_001655351.1| putative SNF2 helicase [Microcystis aeruginosa NIES-843]
 gi|166085451|dbj|BAG00159.1| putative SNF2 helicase [Microcystis aeruginosa NIES-843]
          Length = 1040

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    +E+   L+            +  ++  Q+ N    +  +   +      K++ L
Sbjct: 809  LYEVVIKEVEKQLEEAEGIKRKGLILSTLMRLKQICNHPRQFLQDNSAFTPERSHKLERL 868

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
              ++E+       +++   F      LQK   Q           G +  K    I+E+  
Sbjct: 869  GEMLEEVILEGDSLLIFTQFTEIGDSLQKYLKQTFRYNTYYLHGGTSQPKREQMIEEFQH 928

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+     Q  +R       + G ++ 
Sbjct: 929  PETEPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVENQATDR-----AFRIGQQKN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFV+  +   T++E + + +  K  + + +++
Sbjct: 983  VFVHKFVTLGTLEERIDEMIEEKKKVANAIVS 1014


>gi|159028539|emb|CAO87345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1040

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    +E+   L+            +  ++  Q+ N    +  +   +      K++ L
Sbjct: 809  LYEVVIKEVEKQLEEAEGIKRKGLILSTLMRLKQICNHPRQFLQDNSAFTPERSHKLERL 868

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
              ++E+       +++   F      LQK   Q           G +  K    I+E+  
Sbjct: 869  GEMLEEVILEGDSLLIFTQFTEIGDSLQKYLKQTFRYNTYYLHGGTSQPKREQMIEEFQH 928

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+     Q  +R       + G ++ 
Sbjct: 929  PETEPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVENQATDR-----AFRIGQQKN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFV+  +   T++E + + +  K  + + +++
Sbjct: 983  VFVHKFVTLGTLEERIDEMIEEKKKVANAIVS 1014


>gi|239609929|gb|EEQ86916.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1686

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1382 VTDSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1441

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1442 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1495

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1496 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|256085322|ref|XP_002578871.1| helicase [Schistosoma mansoni]
 gi|238664258|emb|CAZ35109.1| helicase swr1, putative [Schistosoma mansoni]
          Length = 1272

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
            E    K+  L+ ++ +  +N   +++       +  L++     +           L   
Sbjct: 949  EDDSGKLTTLDYLLSELKSNGHRVLIYSQMTRMIDILEEFMLYRKHAYLRLDGSSRLSDR 1008

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + +W    +  +      + G G+NL    + ++F+   W+    QQ ++R      
Sbjct: 1009 RDMVAQWQTNPRWFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----A 1062

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI +NT++  +L+R   K  +Q +++ +
Sbjct: 1063 HRLGQTKPVTVYRLICKNTVEGRMLRRAEEKRAMQQMVIQS 1103


>gi|327350853|gb|EGE79710.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1686

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1382 VTDSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1441

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1442 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1495

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1496 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|261198791|ref|XP_002625797.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594949|gb|EEQ77530.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1686

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1382 VTDSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1441

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1442 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1495

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1496 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|225022844|ref|ZP_03712036.1| hypothetical protein CORMATOL_02890 [Corynebacterium matruchotii ATCC
            33806]
 gi|224944368|gb|EEG25577.1| hypothetical protein CORMATOL_02890 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1054

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHW----KEVHDEK 55
              Y  +  +L   L+                K  Q+ N   ++  +             K
Sbjct: 822  ALYTAYVNDLTTQLEQAEGIGRRGLVLASLTKIKQICNHPAHFLGDGSPMLRGNHHRSGK 881

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
            ++ L  I+E A  +   +++   + +    L                 G +       +Q
Sbjct: 882  VEELMQIVENARDHGEKVLIFTQYKAFGDMLTPYLSDYYGQKIPFLHGGVSKSGRDIMVQ 941

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++      P +     + G GLNL    NI+V    WW+     Q  +R       + G 
Sbjct: 942  QFQAPDGAPAMVLSLKAGGTGLNLT-AANIVVHMDRWWNPAVENQATDR-----AYRIGQ 995

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + VFVY LI   T++E +   +  KS +   ++
Sbjct: 996  DKNVFVYKLITAGTVEERIHDIISGKSELAAAMI 1029


>gi|319942795|ref|ZP_08017097.1| hypothetical protein HMPREF9464_02316 [Sutterella wadsworthensis
            3_1_45B]
 gi|319803605|gb|EFW00561.1| hypothetical protein HMPREF9464_02316 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1304

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              Q++N    + +E    +    K +AL  ++ +   +    +V   F     RL +   
Sbjct: 1108 LKQISNSPSQFQKE-FVDKPDSGKAEALLELLRRCRQSGRKALVFTQFREMGERLVRWIE 1166

Query: 90   QGRTLD-----------KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             K    +  + N     +      + G GLNL    + ++ + L
Sbjct: 1167 DATGRKPEFLHGGVPAAKRMEMVDAFQNNPDSEIFILSLKAGGTGLNLT-AASAVIHYDL 1225

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            WW+     Q  +R       + G +R V VY  I   T +E V + L+ K  + DL
Sbjct: 1226 WWNPAVEDQASDRAW-----RIGQRRDVVVYRFITAGTFEEKVNEMLKKKRELADL 1276


>gi|300709133|ref|XP_002996734.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
 gi|239606056|gb|EEQ83063.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
          Length = 1243

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSD 80
               +T   L  A+  +Y+            K+K LE II           I++ + + + 
Sbjct: 1047 GLKRTRDLLNAASHILYFKTSSEV----SCKMKGLEDIINLYGGEDIKNKILIFFQYKTT 1102

Query: 81   LARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            +  + + F +                K      ++N G IP+LF      G GLNL  G 
Sbjct: 1103 IDFVLQDFKKKYNLKYLRLDGSVPASKRAKIALDFNTGNIPILFLTTHIGGLGLNLT-GA 1161

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F+   W+     Q ++R       + G K  V V+ LI +++I+E V+     K  
Sbjct: 1162 DTVIFYEHDWNPFNDLQAMDR-----AHRIGQKNTVNVFRLITKDSIEEKVMDLQSFKVF 1216

Query: 190  IQDLLL 195
            I   ++
Sbjct: 1217 IASSVV 1222


>gi|294055867|ref|YP_003549525.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615200|gb|ADE55355.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 843

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 25/206 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL----E 60
            +   +L   +Q +   A N  +   +  Q         E     E    KI+ L    E
Sbjct: 622 EELGDDLQAAMQSQ---ATNFFTLLTRLRQACCDPGLIPEVAAPLE-QSGKIQTLLIHLE 677

Query: 61  VIIEKANAAPIIVAYHFNSDLAR----LQKAFPQ-------GRTLDKDPCTIQEWNEGKI 109
             +E A A  +++   F   L R    ++  FP+       G+T D+        N+   
Sbjct: 678 EALEGAGARKVVIFSQFVQLLTRLKPEIKAKFPKVALLELTGQTRDRSKPVETFQNKDGP 737

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++     + G G+ L +  + +     WW+     Q ++R+      + G ++ VFVY 
Sbjct: 738 AVILVSLRAGGTGITL-HAADYVFLLDPWWNPAVENQAVDRV-----HRIGQQKRVFVYR 791

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           +I Q TI+E +    R K  + +  L
Sbjct: 792 MITQGTIEERIQHLKREKRELFENTL 817


>gi|254454608|ref|ZP_05068045.1| SWI/SNF family helicase [Octadecabacter antarcticus 238]
 gi|198269014|gb|EDY93284.1| SWI/SNF family helicase [Octadecabacter antarcticus 238]
          Length = 702

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 33/227 (14%)

Query: 1   MKQYHKFQRELYC-------DLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKH 47
           + QY + +RE           +  +  EA N               Q+ N   ++ + K 
Sbjct: 465 IDQYCQLEREQAALYQTTMNQIMEKIEEADNIERRGLVLKLITALKQICNHPSHFLKHKT 524

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTL 94
                  K   L  +I+   AN   +++   +      LQK   +           G T 
Sbjct: 525 LDAEKSGKTAMLMELIDNIAANEEKLLIFTQYTQMGNLLQKLITEKFGLEPLFLHGGLTR 584

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + ++  +  +  L     + G GLNL    N +V F LWW+     Q  +R   
Sbjct: 585 QSRDEIVDDFQTKPYVKTLILSLKAGGTGLNLTAAQN-VVHFDLWWNPAVEAQATDR--- 640

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G    V V+ LI + T +E +   L+ K  + D+ ++  +K
Sbjct: 641 --AYRIGQTSNVMVHRLITRGTFEEKINTMLKDKRELADMAISKGEK 685


>gi|302883714|ref|XP_003040756.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
 gi|256721646|gb|EEU35043.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
          Length = 805

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL------ 94
           E K W       +  +   I +     I++  ++ S L    RL ++   G         
Sbjct: 555 EVKSWYSGKMAVLDRMLARIRQDTNDKIVLISNYTSTLDLFERLCRSRQYGCLRLDGTMN 614

Query: 95  -DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +K    +  +N   G   +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 615 VNKRQKLVDRFNDPNGDEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARV 673

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 674 W-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 721


>gi|22299156|ref|NP_682403.1| putative helicase [Thermosynechococcus elongatus BP-1]
 gi|22295338|dbj|BAC09165.1| tlr1613 [Thermosynechococcus elongatus BP-1]
          Length = 999

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 1   MKQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           M+ Y     +    ++         N  +   K  Q+ N    Y +++ +      K++ 
Sbjct: 765 MQLYTAVVEDSLAAIENSQGIQRRGNILATLTKLKQICNHPAQYLKQEDYAPDRSGKLQR 824

Query: 59  LEVIIEKAN--AAPIIVAYHF----NSDLARLQKAFPQ------GRTLD-KDPCTIQEWN 105
           L  +++         +V   F          L+KA  Q      GRT   +    ++ + 
Sbjct: 825 LIEMLQALQEVGDRALVFTQFAEFGTHLKTYLEKALQQEVFFLSGRTPKAQRELMVERFQ 884

Query: 106 -EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + + P +      + G GLNL    N +  +  WW+     Q  +R+      + G  R
Sbjct: 885 HDPEAPRVFILSLKAGGVGLNLTR-ANHVFHYDRWWNPAVENQASDRVF-----RIGQAR 938

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V ++  I   T++E + +++  K  + ++++
Sbjct: 939 NVQIHKFICTGTLEEKIHEQIEQKKALAEMIV 970


>gi|108756872|ref|YP_635387.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108460752|gb|ABF85937.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1093

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +  +   Q+AN    Y  E         K+  +  ++E+  A     +V   F     +
Sbjct: 859  LALLLYTKQIANHPAQYLGESGPLPGRSGKLARVVEMLEESLAAGDKALVFTQFREMGDK 918

Query: 84   LQKAFPQ-----------GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGN 130
            L     +           G         ++ + E      +      + G GLNL    +
Sbjct: 919  LVAHLSEYLGHEVLFLHGGTPRKARDEMVRRFQEDVHGPRVFVLSVKAGGTGLNLT-AAS 977

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +  +  WW+     Q  +R       + G  RAV V+ L+   T++E V + L  K  +
Sbjct: 978  HVFHYDRWWNPAVEDQATDR-----AYRIGQTRAVQVHKLVCAGTVEEKVDRLLEQKRQL 1032

Query: 191  QDLLLNA 197
             + ++ A
Sbjct: 1033 AEKVVGA 1039


>gi|294674417|ref|YP_003575033.1| SNF2 helicase family protein [Prevotella ruminicola 23]
 gi|294472802|gb|ADE82191.1| SNF2 helicase family protein [Prevotella ruminicola 23]
          Length = 713

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
           K + +   IE  ++    +++   F S L  L+              G T ++D    Q 
Sbjct: 552 KYQTVIDYIETFRSEGRKVLLFSQFVSALHELEARLSSADIHFVTLYGDTRNRDIPVRQF 611

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++  I +      + G GLNL    + ++    WW+     Q + R       + G K 
Sbjct: 612 QSDSSITVFLISLKAGGFGLNLT-SADRVILLDDWWNPAVEDQAMAR-----AHRIGQKN 665

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V V  L+ ++T++E +LQ    K    DL  N  +K T+
Sbjct: 666 NVLVLRLVCKDTVEEKILQLQAQKRQTVDLFNNTSEKLTL 705


>gi|256419642|ref|YP_003120295.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256034550|gb|ACU58094.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 1250

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 19/196 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-VIIEKANAAP 70
              + QG            +K  Q+ +     +E + +   H  K+  L   + E  +   
Sbjct: 1042 VIEDQGMERSQLTILQGLMKLRQICDSPAILNEAEQY-PNHSVKLHELTREMSENISNHK 1100

Query: 71   IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
            +++   F   L  +++           F    +  +    IQ +       +      + 
Sbjct: 1101 VLIFSQFLGMLGLIREKLQHMKVPFEYFDGSTSATERERAIQNFQTNDDCRVFLISLKAG 1160

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + +     WW+    QQ I+R       + G  + +F Y +I ++T++E 
Sbjct: 1161 GVGLNLT-AADYVYIVDPWWNPAVEQQAIDR-----THRIGQTKNIFAYRMICKDTVEEK 1214

Query: 180  VLQRLRTKSTIQDLLL 195
            +LQ    K ++   ++
Sbjct: 1215 ILQLQERKKSLVKEII 1230


>gi|295674629|ref|XP_002797860.1| DNA ATP-dependent helicase [Paracoccidioides brasiliensis Pb01]
 gi|226280510|gb|EEH36076.1| DNA ATP-dependent helicase [Paracoccidioides brasiliensis Pb01]
          Length = 1614

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1310 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1369

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1370 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1423

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1424 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVI 1462


>gi|223940436|ref|ZP_03632288.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223890881|gb|EEF57390.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1099

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN 78
               +  +   +  Q+         +         K + L  +++    +   ++V   F 
Sbjct: 904  SKIHVLAALTRLRQICCHPQLVGNDAQ-----SGKTETLFELLDPLLTDGQKVLVFSQFV 958

Query: 79   SDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
              L          +++     G+T  +        ++    +      + G GLNL    
Sbjct: 959  QVLKILEAECQQRQIRTHLLTGQTKQRQEVVAAFQSDPNAAVFLLSLRAAGTGLNLTN-A 1017

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +V +  WW+     Q I+R       + G    V  Y LIA  T++E + +  ++K+ 
Sbjct: 1018 SYVVLYDPWWNPAVEAQAIDR-----SHRIGQVNTVNAYRLIAPGTVEEKIWELQQSKAQ 1072

Query: 190  IQDLLL 195
                +L
Sbjct: 1073 TIADVL 1078


>gi|29840673|ref|NP_829779.1| SNF2 family helicase [Chlamydophila caviae GPIC]
 gi|29835023|gb|AAP05657.1| helicase, Snf2 family [Chlamydophila caviae GPIC]
          Length = 1166

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++          ++   +   L
Sbjct: 970  HVLATLTRLKQICCHPAIF-AKDVPEPGDSAKYDLLMDLLSSLVETGHKTVLFSQYTKML 1028

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            + ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1029 SIIKKDLEARGVRFVYLDGSTKNRLELVNQFNEDPGLLVFLISLKAGGTGLNL-VGADTV 1087

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1088 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILSLQNRKKSLVK 1142

Query: 193  LLLNA 197
             ++N+
Sbjct: 1143 KVINS 1147


>gi|91201478|emb|CAJ74538.1| similar to ATP-dependent RNA helicase (RNA polymerase associated
           protein) [Candidatus Kuenenia stuttgartiensis]
          Length = 886

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 22/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    +EL   L+               +K  QL N    +     ++E    K   L 
Sbjct: 660 LYQNTVKELSKKLEATEGVQRRGLILASLMKFKQLCNHPDQFLGTGGYEEADSGKFMRLR 719

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--GRT---------LDKDPCTIQEWNEG 107
            I E        +++   F      L        GR          +      ++++   
Sbjct: 720 EICETIYEKREKVLIFTQFKEITGHLHAFLKTIFGREGLVMHGSVSVGMRKNIVEQFQNR 779

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           + IP +     + G GLNL    N ++ F  WW+     Q  +R       + G K+ V 
Sbjct: 780 EYIPYMVLSLKAGGVGLNLTE-ANHVIHFDRWWNPAVENQATDR-----AFRIGQKKNVI 833

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+  I + TI+E +   LR K+ +   ++ 
Sbjct: 834 VHKFITKGTIEEKINDMLREKTKLTTDVIQ 863


>gi|150391520|ref|YP_001321569.1| non-specific serine/threonine protein kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951382|gb|ABR49910.1| Non-specific serine/threonine protein kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 883

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 22/213 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +  Y +   ++   L+            +  +K  Q+ N    Y   + +K  H  K + 
Sbjct: 653 IALYKQLIEQISEKLKVAEGIERKGLVLSSIMKFKQICNHPDQYMGREDYKSEHSGKFEQ 712

Query: 59  LEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  I +  +     +++   F      L                 G  + K    ++++N
Sbjct: 713 LREICQIIHEKRERVLIFTQFREMTEPLSDFLSGIFSKEGFVLHGGTPVKKRNEMVEQFN 772

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E  IP +     + G GLNL    N ++ F  WW+     Q  +R       + G  + 
Sbjct: 773 GEHYIPYMVLSLKAGGVGLNLT-AANHVIHFDRWWNPAVENQATDR-----AFRIGQTKN 826

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  + + TI+E +   +  K  +   +L+A
Sbjct: 827 VMVHKFVTKGTIEEKIDAIIEEKQKLSGDILSA 859


>gi|325095531|gb|EGC48841.1| DNA ATP-dependent helicase [Ajellomyces capsulatus H88]
          Length = 1676

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1377 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1436

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1437 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1490

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1491 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1531


>gi|305681970|ref|ZP_07404774.1| SNF2 family N-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658443|gb|EFM47946.1| SNF2 family N-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 968

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHW----KEVHDEK 55
             Y  +  +L   L+                K  Q+ N   ++  +             K
Sbjct: 736 ALYTAYVNDLTTQLEQAEGIGRRGLVLASLTKIKQICNHPAHFLGDGSPMLRGNHHRSGK 795

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           ++ L  I+E A  +   +++   + +    L                 G +       +Q
Sbjct: 796 VEELMQIVENARDHGEKVLIFTQYKAFGDMLTPYLSDYYGQKIPFLHGGVSKSGRDIMVQ 855

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++      P +     + G GLNL    NI+V    WW+     Q  +R       + G 
Sbjct: 856 QFQAPDGAPAMVLSLKAGGTGLNLT-AANIVVHMDRWWNPAVENQATDR-----AYRIGQ 909

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + VFVY LI   T++E +   +  KS +   ++
Sbjct: 910 DKNVFVYKLITAGTVEERIHDIISGKSELAAAMI 943


>gi|108758570|ref|YP_631070.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108462450|gb|ABF87635.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1002

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 20/195 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           R+    L  E      +    ++  Q A        ++        K++ L   +E A  
Sbjct: 795 RKEVVALLNEGGSVLKALEALLRLRQAACHPALVPGQR---ANTSSKVETLVDALETAVS 851

Query: 67  NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +V   + S L  ++              G T ++   T +  ++   P+L     
Sbjct: 852 EGHKALVFSQWTSLLDLIEPRLKAAGIGFGRLDGTTANRGEVTERFQSQEGEPVLLMSLK 911

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + +     WW+              R  + G +R V VY L++Q T++
Sbjct: 912 AGGTGLNLT-AADHVFLVDPWWNPAAEA-----QAADRAHRIGQERTVMVYRLVSQGTVE 965

Query: 178 ELVLQRLRTKSTIQD 192
           E +L     K  I +
Sbjct: 966 ERILGLQEKKRAIFE 980


>gi|303318869|ref|XP_003069434.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240109120|gb|EER27289.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1688

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1376 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1435

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1436 RDTVSDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1489

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1490 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1530


>gi|251795483|ref|YP_003010214.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247543109|gb|ACT00128.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 965

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 25/189 (13%)

Query: 26  ASKTVKCLQLANGAVYYDEEKH----WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            +   +  QL +     +EE+     W E    K+  L  ++E+  +     ++   F  
Sbjct: 755 LASLTRLKQLCDHPAMLNEERELQQQWDESRSNKVARLLEMVEEIASEGERCLIFTQFVD 814

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQ 126
              +L+K   +           G    K    I ++   + P         + G GLNL 
Sbjct: 815 MGEQLKKLLEERLGLPVPYLHGGVPKAKRDDMIDKFQNPEEPCCAFVLSLKAGGTGLNLT 874

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              N +  F  WW+     Q  +R       + G  + V V+  I   T++E + + +  
Sbjct: 875 -AANHVFHFDRWWNPAVENQATDR-----AFRIGQTKQVQVHKFITLGTLEEKIDEMIDR 928

Query: 187 KSTIQDLLL 195
           K  + + ++
Sbjct: 929 KQQLNEQVV 937


>gi|145253731|ref|XP_001398378.1| DNA helicase ino80 [Aspergillus niger CBS 513.88]
 gi|206558118|sp|A2R9H9|INO80_ASPNC RecName: Full=Putative DNA helicase ino80
 gi|134083950|emb|CAK43045.1| unnamed protein product [Aspergillus niger]
          Length = 1697

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1402 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1461

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1462 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1515

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1516 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVITG 1556


>gi|328915095|gb|AEB55928.1| helicase, Snf2 family [Chlamydophila psittaci 6BC]
          Length = 1130

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++          ++   +   L
Sbjct: 934  HVLATLTRLKQICCHPAIF-AKDVPEPGDSAKYDLLMDLLSSLVETGHKTVLFSQYTKML 992

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            + ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 993  SIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLISLKAGGTGLNL-VGADTV 1051

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1052 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1106

Query: 193  LLLNA 197
             ++N+
Sbjct: 1107 KVINS 1111


>gi|71008587|ref|XP_758230.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
 gi|46097848|gb|EAK83081.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
          Length = 870

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---ARLQKA-------FPQGRTLDKDPCTIQEWN--E 106
           LE I   +N   +++  ++   L    R+ +A            T++K    +  +N  E
Sbjct: 637 LETIRATSNDKIVLI-SNYTQTLDVFERMCRANRWGMFRLDGTMTINKRQKLVDRFNDPE 695

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +      + G GLNL  G N LV F   W+    QQ + R+      + G K++ F
Sbjct: 696 GKEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPASDQQALARVW-----RDGQKKSCF 749

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           VY  IA  +I+E +LQR   K ++   +++  +    H
Sbjct: 750 VYRFIATGSIEEKILQRQSHKQSLSSCVVDEAQDAARH 787


>gi|89897903|ref|YP_515013.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331275|dbj|BAE80868.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1165

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++          ++   +   L
Sbjct: 969  HVLATLTRLKQICCHPAIF-AKDVPEPGDSAKYDLLMDLLSSLVETGHKTVLFSQYTKML 1027

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            + ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1028 SIIKKDLEASGVRFVYLDGSTKNRLELVNQFNEDPGLLVFLISLKAGGTGLNL-VGADTV 1086

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1087 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1141

Query: 193  LLLNA 197
             ++N+
Sbjct: 1142 KVINS 1146


>gi|291298955|ref|YP_003510233.1| SNF2-like protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568175|gb|ADD41140.1| SNF2-related protein [Stackebrandtia nassauensis DSM 44728]
          Length = 621

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 23/211 (10%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI-KAL 59
           K Y    +R +   L               +  Q+ N    +  ++H       K+ +A 
Sbjct: 389 KLYSAAVERAMNDGLGSGFERHGRVLKLLTELKQICNHPAQFLRQEHPLTGRSGKLARAT 448

Query: 60  EVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP------------CTIQEWNE 106
           E++ E  A  A  +V   +      L         L+K P              + E+  
Sbjct: 449 EMLAEAVAEGAQSLVFTQYRVMGELLATHLAAELGLEKVPFLHGGVSQPGRDAMVAEFQS 508

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           G  P  +L     + G GLNL    ++L  +  WW+     Q  +R       + G  + 
Sbjct: 509 GDDPPPILIVSLKAGGTGLNLTAATHVL-HYDRWWNPAVEDQATDR-----AHRIGQTKP 562

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V VY L+   T++E +   L  K ++ + ++
Sbjct: 563 VTVYKLVTGGTLEERISDLLERKRSLAESIV 593


>gi|320034589|gb|EFW16533.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1621

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1335 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1394

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1395 RDTVSDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1448

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1449 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1489


>gi|46127169|ref|XP_388138.1| hypothetical protein FG07962.1 [Gibberella zeae PH-1]
          Length = 856

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           E K W       +  +   I +     I++  ++ S L   +K                 
Sbjct: 606 EVKSWYSGKMAVLDRMLARIRQDTNDKIVLISNYTSTLDLFEKLCRSRQYGSLRLDGTMN 665

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    +  +N  EG   +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 666 VNKRQKLVDRFNDPEGDEFIFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARV 724

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 725 W-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 772


>gi|7384851|dbj|BAA93079.1| Rad54 homolog [Neurospora crassa]
          Length = 834

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I       I++  ++   L    RL +    G       
Sbjct: 562 DRDVKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGT 621

Query: 95  ---DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N  EG   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 622 MNVNKRQKLVDKFNDPEGDEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 680

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 681 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 730


>gi|85092588|ref|XP_959470.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|28920899|gb|EAA30234.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|40804592|emb|CAF05853.1| Rad54 homolog MUS-25 [Neurospora crassa]
          Length = 831

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I       I++  ++   L    RL +    G       
Sbjct: 558 DRDVKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGT 617

Query: 95  ---DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N  EG   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 618 MNVNKRQKLVDKFNDPEGDEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 676

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 677 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 726


>gi|256028234|ref|ZP_05442068.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289766166|ref|ZP_06525544.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289717721|gb|EFD81733.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 899

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+   +   N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTLSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|238503530|ref|XP_002382998.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus flavus
            NRRL3357]
 gi|220690469|gb|EED46818.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus flavus
            NRRL3357]
          Length = 1553

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1325 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1384

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1385 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1438

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1439 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1479


>gi|225557800|gb|EEH06085.1| DNA ATP-dependent helicase [Ajellomyces capsulatus G186AR]
          Length = 1676

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1377 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1436

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1437 RDTVLDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1490

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1491 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1531


>gi|229489423|ref|ZP_04383286.1| Non-specific serine/threonine protein kinase [Rhodococcus
           erythropolis SK121]
 gi|229323520|gb|EEN89278.1| Non-specific serine/threonine protein kinase [Rhodococcus
           erythropolis SK121]
          Length = 609

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     + +    G  I    N  +      Q+ N       +         K+    
Sbjct: 378 RIYRSAVADAFDSGLGTGIARRGNILALLTTLKQVCNHPAQVTGDTDDLYGRSGKLDRAT 437

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCTIQEWNE 106
            +I +   +    ++   + +    L +                G   DK    +  +  
Sbjct: 438 EMISEIVDDGDRALIFTQYRTMGEMLSRHLGAELGIGAVPFLHGGLNTDKRDAMVDAFQN 497

Query: 107 G--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P+L     + G GLNL    + +V +  WW+     Q  +R       + G KR 
Sbjct: 498 DTDSPPVLILSLRAAGFGLNLTRASH-VVHYDRWWNPAVEDQATDR-----AHRIGQKRT 551

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V V+ L+   T+++ +     +K  + D +
Sbjct: 552 VNVHTLVTGGTVEDHIAAMHESKRAVADAV 581


>gi|62185488|ref|YP_220273.1| putative helicase [Chlamydophila abortus S26/3]
 gi|62148555|emb|CAH64326.1| putative helicase [Chlamydophila abortus S26/3]
          Length = 1165

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++          ++   +   L
Sbjct: 969  HVLATLTRLKQICCHPAIF-AKDVPEPGDSAKYDLLMDLLSSLVETGHKTVLFSQYTKML 1027

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            + ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1028 SIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLISLKAGGTGLNL-VGADTV 1086

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1087 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1141

Query: 193  LLLNA 197
             ++N+
Sbjct: 1142 KVINS 1146


>gi|54022998|ref|YP_117240.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54014506|dbj|BAD55876.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 956

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 26/216 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEK 55
             Y     ++   L+     A   A      +  Q+ N   ++  +             K
Sbjct: 721 ALYQAVVDDMLVKLRSAKGMARKGAVLGALTRLKQVCNHPAHFLGDGSPVLHRGRHRSGK 780

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E +++   A+    ++   F      L     +           G T       ++
Sbjct: 781 LALVEDVLDTVVADGEKALLFTQFREFGDLLAPYLSERFGAPIPFLHGGVTKKNRDTMVE 840

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  G   P++     + G GL L    N +V    WW+     Q  +R       + G 
Sbjct: 841 RFQSGDGPPVMLLSLKAGGTGLTLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQ 894

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R V V  L+  +TI+E + + +  KS + DL ++A
Sbjct: 895 RRDVQVRKLVCVDTIEERIDEMITGKSRLADLAVDA 930


>gi|329943255|ref|ZP_08292029.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
            Cal10]
 gi|313848406|emb|CBY17410.1| putative helicase [Chlamydophila psittaci RD1]
 gi|325506467|gb|ADZ18105.1| SNF2 family helicase [Chlamydophila psittaci 6BC]
 gi|328814802|gb|EGF84792.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
            Cal10]
          Length = 1165

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            +  +   +  Q+      +  +   +     K   L  ++          ++   +   L
Sbjct: 969  HVLATLTRLKQICCHPAIF-AKDVPEPGDSAKYDLLMDLLSSLVETGHKTVLFSQYTKML 1027

Query: 82   ARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            + ++K          +  G T ++     Q   +  + +      + G GLNL  G + +
Sbjct: 1028 SIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLISLKAGGTGLNL-VGADTV 1086

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + +WW+     Q  +R+      + G  R+V  Y L+  NTI+E +L     K ++  
Sbjct: 1087 IHYDMWWNPAVENQATDRV-----HRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVK 1141

Query: 193  LLLNA 197
             ++N+
Sbjct: 1142 KVINS 1146


>gi|289620805|emb|CBI52539.1| putative RAD54 protein [Sordaria macrospora]
          Length = 824

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I       I++  ++   L    RL +    G       
Sbjct: 555 DRDVKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGT 614

Query: 95  ---DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N  EG+  +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 615 MNVNKRQKLVDKFNDPEGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 673

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 674 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 723


>gi|190570762|ref|YP_001975120.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190357034|emb|CAQ54427.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 1178

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLA 82
                    Q+ N   ++ ++K        K++ LE I   I +      ++   +     
Sbjct: 976  LKLINALKQVCNHPSHFGKKKRASIEQSGKMQMLEEILIGISELAEKS-LIFTQYTEMGE 1034

Query: 83   RLQKAFPQ-----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
             + +   +             +       + ++ N  +  +L     + G GLNL    N
Sbjct: 1035 IIARLLEEKFESKVPFLHGSLSRKARDKMVNDFENSFRSNILIVSLKAGGTGLNLT-AAN 1093

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ + LWW+     Q  +R       + G +R V VY L++  T +E + + +++K  +
Sbjct: 1094 HVIHYDLWWNPAVEAQATDR-----AYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKEL 1148

Query: 191  QDLLLNA 197
             +L +++
Sbjct: 1149 ANLTISS 1155


>gi|212535682|ref|XP_002147997.1| SNF2 family helicase/ATPase (Ino80), putative [Penicillium marneffei
            ATCC 18224]
 gi|210070396|gb|EEA24486.1| SNF2 family helicase/ATPase (Ino80), putative [Penicillium marneffei
            ATCC 18224]
          Length = 2500

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 2211 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 2270

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    +  +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 2271 RDTVADFQHRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 2324

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 2325 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 2365


>gi|282899415|ref|ZP_06307382.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281195679|gb|EFA70609.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 1081

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 23/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             S  VK  Q+ N    Y  E   ++    K++ L+ ++E+  A  +  ++   F ++L +
Sbjct: 871  LSLLVKLKQICNHPAQYLHESSLEKYSSAKLQRLQEMLEEVIAEKSRALIFTQF-AELGK 929

Query: 84   LQK-----------AFPQGRT-LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGG 129
            L +            F  G T   +    +  + +     P++     + G GLNL    
Sbjct: 930  LLQPYLAKHLDREIFFLYGTTGKKQREEMVDRFQQDPQGPPIMILSLKAGGVGLNLTR-A 988

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            N +  F  WW+     Q  +R       + G  + V V+  + + T++E +   + +K  
Sbjct: 989  NYVFHFDRWWNPAVENQATDR-----AFRIGQTQNVQVHKFVCRGTLEEKIHDMIESKKQ 1043

Query: 190  IQDLLLNA 197
            +   ++++
Sbjct: 1044 LAQQVISS 1051


>gi|119181996|ref|XP_001242158.1| hypothetical protein CIMG_06054 [Coccidioides immitis RS]
 gi|121937034|sp|Q1DUF9|INO80_COCIM RecName: Full=Putative DNA helicase INO80
          Length = 1662

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1376 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1435

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1436 RDTVSDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1489

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1490 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1530


>gi|256375189|ref|YP_003098849.1| Non-specific serine/threonine protein kinase [Actinosynnema mirum DSM
            43827]
 gi|255919492|gb|ACU35003.1| Non-specific serine/threonine protein kinase [Actinosynnema mirum DSM
            43827]
          Length = 1028

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   + G   +           K  Q+ N       +         K+  LE
Sbjct: 798  LYQAVLDDMLAKVDGSEGQERRGLVLASLSKLKQVCNHPAQLLGDGSRVAGRSGKVNRLE 857

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWN-E 106
             ++E+  A+    +    F    + L                 G         ++ +  E
Sbjct: 858  EVLEEVLADGDKALCFTQFTEFGSLLAPHLSARFDTDVLFLHGGTPKRARDAMVERFQGE 917

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL    N ++    WW+     Q  +R       + G +R V 
Sbjct: 918  GGPSVFLLSLKAGGTGLNLT-AANHVIHLDRWWNPAVEDQATDR-----AFRIGQRRHVQ 971

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   +   T++E + + +  K  +  +++
Sbjct: 972  VRKFVCAGTVEERIDRMVEQKRGLARMVV 1000


>gi|258572046|ref|XP_002544805.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
 gi|237905075|gb|EEP79476.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
          Length = 1668

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1384 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1443

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1444 RDTVSDFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1497

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1498 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1538


>gi|256846855|ref|ZP_05552310.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
 gi|256717821|gb|EEU31379.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
          Length = 899

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|322707957|gb|EFY99534.1| recombinational repair protein [Metarhizium anisopliae ARSEF 23]
          Length = 807

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPCTIQEWN-- 105
            L  I +  N   +++  ++ S L    RL ++   G          +K    +  +N  
Sbjct: 572 MLARIRQDTNDKIVLI-SNYTSTLDLFERLCRSREYGCLRLDGTMNVNKRQKLVDRFNDP 630

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 631 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 684

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 685 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 723


>gi|294786039|ref|ZP_06751326.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
 gi|294486376|gb|EFG33739.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
          Length = 899

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|237740914|ref|ZP_04571395.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
 gi|229431211|gb|EEO41423.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
          Length = 899

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|34763541|ref|ZP_00144479.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886790|gb|EAA23925.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 899

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|224139776|ref|XP_002323271.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867901|gb|EEF05032.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1540

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1214 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR 1273

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1274 DMVRDFQLRNDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1327

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +LQR   K+T+Q L++  
Sbjct: 1328 RLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1367


>gi|254304375|ref|ZP_04971733.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324567|gb|EDK89817.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 899

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELETKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|189091948|ref|XP_001929807.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803083|emb|CAD60786.1| unnamed protein product [Podospora anserina]
 gi|188219327|emb|CAP49307.1| unnamed protein product [Podospora anserina S mat+]
          Length = 800

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK-----AFPQGRT--- 93
           ++  K  +  K++ L+ +   I       I++  ++   L   +K     A+P  R    
Sbjct: 548 DRDIKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQTLDLFEKLCRSRAYPCLRLDGK 607

Query: 94  --LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    + ++N   G   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 608 MLVNKRQKLVDKFNDPNGDEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 666

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 667 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 716


>gi|327308794|ref|XP_003239088.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
 gi|326459344|gb|EGD84797.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
          Length = 808

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL +A   G 
Sbjct: 546 SNGRRGDREAKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYGC 605

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    + ++N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 606 IRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 664

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 665 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVIDSAEDVER 719

Query: 204 H 204
           H
Sbjct: 720 H 720


>gi|75909484|ref|YP_323780.1| SNF2-like helicase [Anabaena variabilis ATCC 29413]
 gi|75703209|gb|ABA22885.1| SNF2-related helicase [Anabaena variabilis ATCC 29413]
          Length = 1078

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 31/221 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y K       +++            +  +K  Q+ N    Y +    ++    K++ L
Sbjct: 834  ALYQKVVETSLAEIESAEGLQRRGMILALLIKLKQICNHPAQYLKTNTLEQYSSGKLQRL 893

Query: 60   EVIIEK----------ANAAPIIVAYHFNSDLARLQKAFPQ--GRT---------LDKDP 98
            E ++E+          A A   ++   F      L+    +  GR            +  
Sbjct: 894  EEMLEEVLAESNTYGVAGAGRALIFTQFAEWGKLLKPHLEKQLGREVFFLYGSTSKKQRE 953

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +       P++     + G GLNL    N +  F  WW+     Q  +R+     
Sbjct: 954  EMIDRFQHDPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF---- 1008

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V V+  +   T++E +   + +K  + + ++ A
Sbjct: 1009 -RIGQTRNVQVHKFVCNGTLEEKIHDMIESKKQLAEQVVGA 1048


>gi|51891795|ref|YP_074486.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855484|dbj|BAD39642.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 989

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 22/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y    +E        +     +A      +  Q+ N                 KI  L
Sbjct: 763 ALYEAIVQETLERAAQADGIQRQAAVLAGLTRLKQVCNHPA-AATGDGPLVGRSGKIDRL 821

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
             ++++  A     ++   F     RLQ    +           G    +    +  +  
Sbjct: 822 VQLLQEVLAAGEQALLFTQFARFGGRLQAYLAETLGCEVLFLHGGTPQPERDRLVARFQA 881

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+ PL      + G GLNL    + +     WW+     Q  +R       + G  R V 
Sbjct: 882 GEAPLFILSLKAGGLGLNLTAATH-VFHVDRWWNPAVEDQATDR-----AYRIGQTRRVL 935

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ LI   T++E + + L  K  +   ++
Sbjct: 936 VHRLITAGTLEERIDRLLAEKRALAGQVI 964


>gi|302695791|ref|XP_003037574.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
 gi|300111271|gb|EFJ02672.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
          Length = 1161

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
               K+  L+ ++++  A+   +++       +  L++     +           ++    
Sbjct: 910  DSGKLSGLDTLLQQLKADGHRVLLYSQMTKLMDILEEYLIYRQYKYLRLDGSCKVETRRD 969

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +W  + +  +      + G G+NL    + +VF+   W+     Q ++R       +
Sbjct: 970  LVNDWQTKPEYFVFLLSTKAGGVGINLT-AADTVVFYDHDWNPSNDAQAMDR-----AHR 1023

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI +NT+DE VL+  R K  +QD+++
Sbjct: 1024 LGQTRQVTVYRLICRNTVDERVLKMARRKKDVQDVVV 1060


>gi|229119309|ref|ZP_04248612.1| hypothetical protein bcere0017_55440 [Bacillus cereus Rock1-3]
 gi|228664175|gb|EEL19713.1| hypothetical protein bcere0017_55440 [Bacillus cereus Rock1-3]
          Length = 408

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 20/196 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 227 KLYKEFKKHHIVEIGEELLLGDTPAAKKLYLRQLAGS------------YNENKLQYVKD 274

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           ++E  N   II+ Y+F  +   L     +   T++ +   +  + + +  +      +  
Sbjct: 275 LVESTNDR-IIIFYNFKKEYEALVDLIDKPISTVNGNLKDLTAYEKFENSVTLIQYQAGA 333

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +V+F+L    E  +Q  +R       + G +R  F YYL+   +I+  +
Sbjct: 334 MGLNLQK-ANKIVYFTLTDKSELFEQSKKR-----THRIGQERPCFYYYLLTDGSIEWRM 387

Query: 181 LQRLRTKSTIQDLLLN 196
           L  L+ +    D+L  
Sbjct: 388 LDVLKERKDYTDVLFE 403


>gi|302658601|ref|XP_003021002.1| hypothetical protein TRV_04867 [Trichophyton verrucosum HKI 0517]
 gi|291184877|gb|EFE40384.1| hypothetical protein TRV_04867 [Trichophyton verrucosum HKI 0517]
          Length = 1522

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1233 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1292

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1293 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1346

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1347 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1387


>gi|207345444|gb|EDZ72265.1| YGL150Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 534

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K++ L+ ++ K  +    +++ +     +  +++                 L+     
Sbjct: 343 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 402

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 403 VHDWQTNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 456

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 457 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEG 494


>gi|153807263|ref|ZP_01959931.1| hypothetical protein BACCAC_01541 [Bacteroides caccae ATCC 43185]
 gi|149130383|gb|EDM21593.1| hypothetical protein BACCAC_01541 [Bacteroides caccae ATCC 43185]
          Length = 948

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 24/191 (12%)

Query: 18  ENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIV 73
           + + +F+  +  ++  QLA     +Y D           K   +  I +  ++    +++
Sbjct: 750 DKLHSFSILNGILRLRQLACHPQLIYPDFNG-----ASGKAIQIIEIFDTLRSEGHKVLI 804

Query: 74  AYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
              F   L  L +AF +         G T ++         +  +        + G GLN
Sbjct: 805 FSSFVKHLEVLAEAFRERGWKYALLTGATNNRPSEIAHFTEQKDVQAFLISLKAGGVGLN 864

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L     + +    WW+     Q I R       + G  + V  Y  I QN+I+E +L   
Sbjct: 865 LTQADYVFI-IDPWWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILYLQ 918

Query: 185 RTKSTIQDLLL 195
             K  + +  +
Sbjct: 919 DEKRKLAETFV 929


>gi|311896870|dbj|BAJ29278.1| putative truncated ATP-dependent helicase [Kitasatospora setae
           KM-6054]
          Length = 441

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 26/211 (12%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     +L   L G           +   +  Q+ N       ++        K++ L 
Sbjct: 211 LYQAVVADLLDRLGGVRGVERKGAVLAALGRLKQVCNHPAQLLRDRSPLGGRSGKVERLV 270

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD-------------KDPCTIQEWN 105
            ++ +A      ++V   +    A LQ      R LD             +    +  + 
Sbjct: 271 ALLREALAEGDRVLVFTQYAEFGALLQPHL--RRRLDTPVLYLHGGLSAPRRQELVDSFQ 328

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P +      + G GLNL    N +V    WW+     Q  +R       + G  R 
Sbjct: 329 SPDGPRVFLLSLKAGGTGLNLT-AANQVVHLDRWWNPATEDQATDR-----AHRIGQHRD 382

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V  L+   TI+E + + + TK  + D ++
Sbjct: 383 VQVRKLVCTGTIEERIAELIDTKRELADSVV 413


>gi|302408325|ref|XP_003001997.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
 gi|261358918|gb|EEY21346.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
          Length = 857

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
            +  K  +  K++ L+ +   I +     I++  ++   L    RL ++   G       
Sbjct: 605 NREVKPWYSGKMQVLDRMLARIRQDTNDKIVLISNYTQTLDIFERLCRSRAYGCLRLDGT 664

Query: 95  ---DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N+  G+  +      + G G+NL  G N LV F   W+    QQ + 
Sbjct: 665 MNVNKRQKLVDKFNDPAGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALA 723

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 724 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 773


>gi|255692899|ref|ZP_05416574.1| Snf2 family helicase [Bacteroides finegoldii DSM 17565]
 gi|260621348|gb|EEX44219.1| Snf2 family helicase [Bacteroides finegoldii DSM 17565]
          Length = 1010

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 18/188 (9%)

Query: 18  ENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           + + +F+  +  ++  QLA    + + +         + I+  + +  ++    +++   
Sbjct: 812 DKLHSFSVLNGILRLRQLACHPQLIFPDFTGSSGKTAQIIETFDTL--RSEGHKVLIFSS 869

Query: 77  FNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
           F   L  L +AF +         G T D+         +  +        + G GLNL  
Sbjct: 870 FVKHLEVLAEAFQERGWKYALLTGATNDRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQ 929

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +    WW+     Q I R       + G  + V  Y  I Q +I+E +LQ    K
Sbjct: 930 ADYVFI-IDPWWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQGSIEEKILQLQDEK 983

Query: 188 STIQDLLL 195
             + +  +
Sbjct: 984 RKLAETFV 991


>gi|42525525|ref|NP_970623.1| Snf2 family protein [Treponema denticola ATCC 35405]
 gi|41815536|gb|AAS10504.1| Snf2 family protein [Treponema denticola ATCC 35405]
          Length = 1194

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y          + G   +    A          Q+ N    YD+E   +  +  K  
Sbjct: 968  LAIYENLVETELHKVMGAETKIERQAYVLKLLTALKQVCNHPRAYDKETPIEMKYSGKAA 1027

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW 104
             L  ++ +  ++    I+   +   L  L+    +                K    ++ +
Sbjct: 1028 VLIELLNEIISSGEKAIIFSQYVGTLDILKNIIQKELGTEPLLLHGQMPASKRKKAVEVF 1087

Query: 105  NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +      + G GLNL    N ++ F LW++     Q  +R       + G  +
Sbjct: 1088 QTDSAYRIFLISLKAGGTGLNLT-AANRVIHFDLWYNPAVEDQATDR-----AFRIGQTK 1141

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VFV+ LI   T +E + + ++ K  I  + ++A
Sbjct: 1142 NVFVHRLICSGTFEEKIDEMIQKKREISGMSISA 1175


>gi|291009114|ref|ZP_06567087.1| Snf2/Rad54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 994

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   +   +             K  Q+ N    +  +         K+  LE
Sbjct: 764 LYQAVVDDMLRRIDESDGMERRGLVLATMSKLKQVCNHPAQFLGDGSPLAGRSGKLARLE 823

Query: 61  VIIEK--ANAAPIIVAYHFNSD----LARLQKAFPQ-------GRTLDKDPCTIQEWNEG 107
            I+E+  A+    +    F       +  L   F         G    +    ++ +   
Sbjct: 824 EILEEVLADGDKALCFTQFAGFGGMLVPHLSARFDTEVLYLHGGTPKKQRDAMVERFQSA 883

Query: 108 KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             P +      + G GL L  G N ++    WW+     Q  +R       + G +R V 
Sbjct: 884 DGPAVFMLSLKAGGTGLTLT-GANHVIHLDRWWNPAVEDQATDR-----AFRIGQRRDVQ 937

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V  L    T++E + + L  K  +  L++ A
Sbjct: 938 VRKLTCIGTLEEKIDRMLEDKKALAQLVVGA 968


>gi|42520462|ref|NP_966377.1| SNF2 family helicase [Wolbachia endosymbiont of Drosophila
            melanogaster]
 gi|42410201|gb|AAS14311.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
            melanogaster]
          Length = 1175

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL 84
                   Q+ N    + ++K        K++ LE I+          ++   +      +
Sbjct: 974  KLINALKQICNHPSQFGKKKRASIEQSGKMQMLEEILISIGEVAEKSLIFTQYTEMGEII 1033

Query: 85   QKAFPQ-----------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
             +   +           G +       I ++    +  +L     + G GLNL    N +
Sbjct: 1034 ARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGGTGLNLT-AANHV 1092

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + LWW+     Q  +R       + G +R V VY L++  T +E + + +++K  + +
Sbjct: 1093 IHYDLWWNPAVEAQATDR-----AYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKELAN 1147

Query: 193  LLLNA 197
            L +++
Sbjct: 1148 LTISS 1152


>gi|134098193|ref|YP_001103854.1| Snf2/Rad54 family helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910816|emb|CAM00929.1| probable helicase, Snf2/Rad54 family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 988

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   +   +             K  Q+ N    +  +         K+  LE
Sbjct: 758 LYQAVVDDMLRRIDESDGMERRGLVLATMSKLKQVCNHPAQFLGDGSPLAGRSGKLARLE 817

Query: 61  VIIEK--ANAAPIIVAYHFNSD----LARLQKAFPQ-------GRTLDKDPCTIQEWNEG 107
            I+E+  A+    +    F       +  L   F         G    +    ++ +   
Sbjct: 818 EILEEVLADGDKALCFTQFAGFGGMLVPHLSARFDTEVLYLHGGTPKKQRDAMVERFQSA 877

Query: 108 KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             P +      + G GL L  G N ++    WW+     Q  +R       + G +R V 
Sbjct: 878 DGPAVFMLSLKAGGTGLTLT-GANHVIHLDRWWNPAVEDQATDR-----AFRIGQRRDVQ 931

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V  L    T++E + + L  K  +  L++ A
Sbjct: 932 VRKLTCIGTLEEKIDRMLEDKKALAQLVVGA 962


>gi|225630349|ref|YP_002727140.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225630743|ref|YP_002727534.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225592330|gb|ACN95349.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225592724|gb|ACN95743.1| helicase, SNF2 family [Wolbachia sp. wRi]
          Length = 1175

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL 84
                   Q+ N    + ++K        K++ LE I+          ++   +      +
Sbjct: 974  KLINALKQICNHPSQFGKKKRASIEQSGKMQMLEEILISIGEVAEKSLIFTQYTEMGEII 1033

Query: 85   QKAFPQ-----------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
             +   +           G +       I ++    +  +L     + G GLNL    N +
Sbjct: 1034 ARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGGTGLNLT-AANHV 1092

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + + LWW+     Q  +R       + G +R V VY L++  T +E + + +++K  + +
Sbjct: 1093 IHYDLWWNPAVEAQATDR-----AYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKELAN 1147

Query: 193  LLLNA 197
            L +++
Sbjct: 1148 LTISS 1152


>gi|281211035|gb|EFA85201.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2415

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             +K   +    K++AL  ++   K N    ++   +   L   +              G 
Sbjct: 1252 PDKKLIQYDCGKLQALAKLLRNLKTNGHRALIFTQWTRMLDVFESFLNLHGYTYLRLDGS 1311

Query: 93   TL-DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  D+     + +N + KI L      S G GLNL  G + ++F+   W+     Q  +R
Sbjct: 1312 TKVDRRQYLAERFNRDNKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDR 1370

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI Q+TI+E +L++   K  + D+++  
Sbjct: 1371 C-----HRIGQTREVNIYRLITQHTIEENILRKSNQKRQLDDVVIQG 1412


>gi|325475354|gb|EGC78539.1| Snf2 family protein [Treponema denticola F0402]
          Length = 1216

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y          + G   +    A          Q+ N    YD+E   +  +  K  
Sbjct: 990  LAIYENLVETELHKVMGAETKIERQAYVLKLLTALKQVCNHPRAYDKETPVEMKYSGKAA 1049

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW 104
             L  ++ +  ++    I+   +   L  L+    +                K    +  +
Sbjct: 1050 LLIELLNEIISSGEKAIIFSQYVGTLDILKNIIQKELGTEPLLLHGQMPASKRKKAVDVF 1109

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G GLNL    N ++ F LW++     Q  +R       + G  +
Sbjct: 1110 QTDPAYRIFLISLKAGGTGLNLT-AANRVIHFDLWYNPAVEDQATDR-----AFRIGQTK 1163

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VFV+ LI   T +E + + ++ K  I  + ++A
Sbjct: 1164 NVFVHRLICSGTFEEKIDEMIQKKREISGMSISA 1197


>gi|251797236|ref|YP_003011967.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247544862|gb|ACT01881.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 1026

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 43/232 (18%)

Query: 2    KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVY---------YDEEKHWK 49
              Y +  +EL  +   L+G   +     S   +  QL N  V           DE +   
Sbjct: 777  ALYEQTVKELMDEVKKLEGIQRKGA-ILSALTRLKQLCNHPVLLTKEVVPVPEDEREEAA 835

Query: 50   EVH-----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------G 91
            E         K++ L  ++++        ++   +      LQ+   +           G
Sbjct: 836  ESAMLISRSAKLERLLDLVKELREEGERCLIFTQYIGMGEMLQRVLGRELGEPVLYLHGG 895

Query: 92   RTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             +       I+++   ++P      +      + G GLNL    N +  F  WW+     
Sbjct: 896  SSKTARDRMIEQFQSRELPPAEQPNVFILSIKAGGVGLNLT-AANHVFHFDRWWNPAVEN 954

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q  +R       + G  R V V+  I+  T++E + + L +K  + D ++ +
Sbjct: 955  QATDR-----AYRMGQTRDVQVHKFISLGTLEERIDEMLESKQQLSDDVITS 1001


>gi|296119487|ref|ZP_06838045.1| putative DNA/RNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967370|gb|EFG80637.1| putative DNA/RNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1036

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 27/215 (12%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKT--VKCLQLANG-AVYYDEEKHWKEVHDE--- 54
              Y     ++   ++      A      +   +  Q+ N  A Y  +             
Sbjct: 802  ALYKALVDDIQLRMETAPKGMALRGLVLSSLTRIKQICNHPAHYLGDGSPVTSKGKHRSG 861

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTI 101
            K++ L  I++ A  +   +++   + +    LQ                G T ++    +
Sbjct: 862  KVEKLMEILDSAVTHDERVLIFTQYKAFGDILQPYLSAQLGAKIPFLHGGVTKNRRDDMV 921

Query: 102  QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             ++      P +     + G GLNL    NI+V    WW+     Q  +R       + G
Sbjct: 922  TDFQAADGPPAMILSLKAGGTGLNLT-AANIVVHMDRWWNPAVENQATDR-----AFRIG 975

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + V VY +I   T++E +   L  K+ +   ++
Sbjct: 976  QSKNVQVYKMITAGTLEESIQDILDGKTQLAGAVV 1010


>gi|225441914|ref|XP_002278785.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1563

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1210 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR 1269

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1270 DMVRDFQLRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1323

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +LQR   KST+Q L++  
Sbjct: 1324 RLGQTKDVTVYRLICKETVEEKILQRASQKSTVQQLVMTG 1363


>gi|115910510|ref|XP_795650.2| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
 gi|115960830|ref|XP_001193156.1| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
          Length = 1571

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K +      K+  L+ ++ +       +++       +  L++               
Sbjct: 1164 PDKDYLVTDSGKMHVLDDLLSQLKDQGHRVLIYSQMTRMIDILEEFLWHRKHTYMRLDGS 1223

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +      +  +     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1224 SKISDRRDMVAGFQSRTDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR 1282

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  + V VY LI + TI+E +L+R R KS +
Sbjct: 1283 -----AHRLGQTKQVTVYRLICKGTIEEHILERAREKSEV 1317


>gi|255586403|ref|XP_002533848.1| ATP binding protein, putative [Ricinus communis]
 gi|223526215|gb|EEF28539.1| ATP binding protein, putative [Ricinus communis]
          Length = 1339

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1143 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR 1202

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1203 DMVRDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1256

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +LQR   K+T+Q L++  
Sbjct: 1257 RLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1296


>gi|260906271|ref|ZP_05914593.1| putative helicase [Brevibacterium linens BL2]
          Length = 1041

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 20/184 (10%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   K  Q+ N   +   +         K++  E I+ +  A    ++    F      
Sbjct: 836  LAAMTKLKQVCNHPAHLLHDGSAIGQRSGKLERFEEIMSETLAEGDRVLCFTQFTDFGEM 895

Query: 84   LQ-----------KAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
            L                   +  +    ++++ E   P +      + G GLNL    N 
Sbjct: 896  LVPHLAAKFDTDVAYLAGSTSKQRRTQIVKDFQEPDGPKIFVLSLKAGGTGLNLT-AANQ 954

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +V    WW+     Q  +R       + G KR V V   I   T++E +   L  K  + 
Sbjct: 955  VVHLDRWWNPAVENQATDR-----AFRIGQKRRVQVRKFIGIGTLEERIDAILEEKKELA 1009

Query: 192  DLLL 195
            D+++
Sbjct: 1010 DMVV 1013


>gi|309790429|ref|ZP_07684991.1| SNF2-related helicase [Oscillochloris trichoides DG6]
 gi|308227542|gb|EFO81208.1| SNF2-related helicase [Oscillochloris trichoides DG6]
          Length = 1032

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y    RE   ++     E   +       +   K  Q+ N   ++ ++         K+
Sbjct: 800  LYEATVREALSEIADAESEEEQTRRRGLVLAMLTKLKQICNHPAHFLKDGSQLAERSGKL 859

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
              L+ ++E+  A     ++   F      LQ    Q           G         ++ 
Sbjct: 860  ARLDEMLEEVVAAEDRALIFTQFAEMGTLLQAHLSQRLGQEILFLHGGTPTRSRDGMVRR 919

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +  P+      + G GLNL    + +  F  WW+     Q  +R       + G  
Sbjct: 920  FQAPEGPPIFILSLKAGGVGLNLTRASH-VFHFDRWWNPAVEDQATDR-----SFRIGQT 973

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R V V+  ++  T++E + + +  K  +   +L A + 
Sbjct: 974  RNVQVHKFVSSGTLEEKIDEMIEGKRALAAQVLGAGEA 1011


>gi|260495666|ref|ZP_05815790.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
 gi|260196849|gb|EEW94372.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
          Length = 899

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|28950292|emb|CAD70746.1| related to DNA-dependent ATPase DOMINO B [Neurospora crassa]
          Length = 1955

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +   N   +++ +     +  +++             G T   D+
Sbjct: 1648 VTDSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1707

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1708 RDTVADFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1761

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1762 HRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1800


>gi|237745383|ref|ZP_04575864.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229432612|gb|EEO42824.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 899

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|168016565|ref|XP_001760819.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162687828|gb|EDQ74208.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1644

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1222 TDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRR 1281

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + ++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1282 DMVNDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTMDLQAMDR-----AH 1335

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI   T++E +++R   K+T+Q L++  
Sbjct: 1336 RLGQTKEVTVYRLICTGTVEEKIMKRASQKNTVQQLVMTG 1375


>gi|19704721|ref|NP_604283.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715039|gb|AAL95582.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 892

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 673 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 728

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 729 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 788

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 789 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 842

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 843 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 872


>gi|302510487|ref|XP_003017195.1| hypothetical protein ARB_04072 [Arthroderma benhamiae CBS 112371]
 gi|291180766|gb|EFE36550.1| hypothetical protein ARB_04072 [Arthroderma benhamiae CBS 112371]
          Length = 1541

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1252 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1311

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1312 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1365

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1366 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1406


>gi|164423223|ref|XP_958688.2| hypothetical protein NCU08919 [Neurospora crassa OR74A]
 gi|157069998|gb|EAA29452.2| hypothetical protein NCU08919 [Neurospora crassa OR74A]
          Length = 1942

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +   N   +++ +     +  +++             G T   D+
Sbjct: 1639 VTDSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1698

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1699 RDTVADFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1752

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1753 HRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1791


>gi|322701898|gb|EFY93646.1| recombinational repair protein [Metarhizium acridum CQMa 102]
          Length = 819

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPCTIQEWN-- 105
            L  I +  N   +++  ++ S L    RL ++   G          +K    +  +N  
Sbjct: 526 MLARIRQDTNDKIVLI-SNYTSTLDLFERLCRSRQYGCLRLDGTMNVNKRQKLVDRFNDP 584

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 585 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 638

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 639 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 677


>gi|310795007|gb|EFQ30468.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 852

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           ++  K  +  K++ L+ +   I +     I++  ++   L   +K               
Sbjct: 600 DRDIKPWYSGKMQVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGT 659

Query: 92  RTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 660 MNVNKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 718

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 719 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 768


>gi|297739617|emb|CBI29799.3| unnamed protein product [Vitis vinifera]
          Length = 1557

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1210 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR 1269

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1270 DMVRDFQLRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1323

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +LQR   KST+Q L++  
Sbjct: 1324 RLGQTKDVTVYRLICKETVEEKILQRASQKSTVQQLVMTG 1363


>gi|37521835|ref|NP_925212.1| helicase [Gloeobacter violaceus PCC 7421]
 gi|35212834|dbj|BAC90207.1| glr2266 [Gloeobacter violaceus PCC 7421]
          Length = 1008

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y +   E    ++            +  VK  Q+ N   +Y  +         K+  L
Sbjct: 771 ALYERVVNESLAKIEQSTGIQRRGTVLATLVKLKQICNHPSHYLGDDGPLANRSGKLSRL 830

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
             ++E+  A+    ++   F      LQ    +           G + ++    I+ +  
Sbjct: 831 GEMLEEVLADEERALIFTQFAEWGHLLQAHLSRQLGSEVFFLYGGTSKNQREAMIERFQS 890

Query: 107 GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G GLNL    N +  F  WW+     Q  +R+      + G  + 
Sbjct: 891 DPQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RIGQTKN 944

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V VY  +   T++E +   + +K  + + +++A
Sbjct: 945 VQVYKYVCTGTLEERINALIESKKALAEQVVSA 977


>gi|67523659|ref|XP_659889.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|74681303|sp|Q5BAZ5|INO80_EMENI RecName: Full=Putative DNA helicase ino80
 gi|40745240|gb|EAA64396.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|259487678|tpe|CBF86533.1| TPA: Putative DNA helicase ino80 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5BAZ5] [Aspergillus
            nidulans FGSC A4]
          Length = 1612

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                        I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1377 RDTVADFQQRPDIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1430

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI ++TI+E + +R   K  +Q ++++ 
Sbjct: 1431 HRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISG 1471


>gi|296327606|ref|ZP_06870151.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155280|gb|EFG96052.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 899

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +  +  +  +         G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+     Q I+R       + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNTTVENQAIDR-----AYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +I +NTI+E +L+    K+ + D L++
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLIS 879


>gi|71019185|ref|XP_759823.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
 gi|46099621|gb|EAK84854.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
          Length = 1060

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 55  KIKALEVIIE---KANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----I 101
           K+  +  +++         +++  +F S L  +     +K +P  R   K P       +
Sbjct: 683 KLICVMNLLQTVRAQTDDKVVLVSNFTSTLDIIEAMMRKKRYPYLRLDGKTPQDERMAMV 742

Query: 102 QEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++N     K  +      S G GLNL  G N LV     W+     Q + RI      +
Sbjct: 743 NQFNREGVDKSFVFLLSAKSGGVGLNL-IGANRLVLIDSDWNPSTDLQAMARI-----HR 796

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G K+  ++Y L+   T+DE + QR  +K  + D L+NA KK T
Sbjct: 797 DGQKKPCYIYRLLLSGTMDEKIYQRQISKLGLSDSLMNAEKKTT 840


>gi|327300603|ref|XP_003234994.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326462346|gb|EGD87799.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1691

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1402 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1461

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +      +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1462 RDTVLDFQQRPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1515

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1516 HRLGQTRQVTVYRLITRRTIEERIRKRALQKEEVQRVVISG 1556


>gi|153870520|ref|ZP_01999904.1| SNF2 family protein [Beggiatoa sp. PS]
 gi|152073016|gb|EDN70098.1| SNF2 family protein [Beggiatoa sp. PS]
          Length = 1036

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    +E+   L+            +  +K  Q+ N    +  +   + +    K++ L
Sbjct: 804  LYEAVVKEVAAQLEEAEGIQRKGLMLSTLMKLKQICNHPRQFLQDSSIFSKERSHKLERL 863

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
              ++E+  A     ++   F      L K               G T +K    I E+ E
Sbjct: 864  TEMLEEVIAEQESALIFTQFTEIGENLNKYLKHNLNYNSYYLHGGTTRNKREQMITEFQE 923

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P  +      + G G+ L    N +  F  WW+     Q  +R       + G  + 
Sbjct: 924  SDTPPSVFVLSLKAGGVGITLTK-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQHKN 977

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFV+  ++  T++E + + +  K  I   ++
Sbjct: 978  VFVHKFVSLGTLEERIDEMIEDKKKIARSIV 1008


>gi|226305488|ref|YP_002765448.1| helicase [Rhodococcus erythropolis PR4]
 gi|226184605|dbj|BAH32709.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 609

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           N  +      Q+ N       +         K+     +I +   +    ++   + +  
Sbjct: 401 NILALLTTLKQVCNHPAQVTGDTDDLYGRSGKLDRATEMIAEIVDDGDRALIFTQYRTMG 460

Query: 82  ARLQKAFP------------QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
             L +                G   DK    +  +       P+L     + G GLNL  
Sbjct: 461 EMLSRHLGSELGIGAIPFLHGGLNTDKRDAMVDAFQNDTDSPPVLILSLRAAGFGLNLTR 520

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +V +  WW+     Q  +R       + G KR V V+ L+   T+++ +     +K
Sbjct: 521 ASH-VVHYDRWWNPAVEDQATDR-----AHRIGQKRTVNVHTLVTGGTVEDHIAAMHESK 574

Query: 188 STIQDLL 194
             + D +
Sbjct: 575 RAVADAV 581


>gi|330944191|ref|XP_003306326.1| hypothetical protein PTT_19456 [Pyrenophora teres f. teres 0-1]
 gi|311316176|gb|EFQ85559.1| hypothetical protein PTT_19456 [Pyrenophora teres f. teres 0-1]
          Length = 1892

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 25/200 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANG---AVYYDEEKHWKEVHDE-KIKALEVIIEK--ANA 68
            L+ +   A  + +   K  Q  N      + +     + V D  K+  L+ ++++  AN 
Sbjct: 1264 LEAKTESA--ALTVCNKLPQPTNERTRFTHIEAPSMSRFVTDSGKLAQLDALLKELKAND 1321

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGK-IPLLFAHPA 117
              +++ +     +  +++             G T  +D    + ++   + I +      
Sbjct: 1322 HRVLLYFQMTRMMDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDRSIFVFLLSTR 1381

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+     Q ++R       + G  R V VY LI + TI+
Sbjct: 1382 AGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRLGQTRQVTVYRLITRGTIE 1435

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E + +R   K  +Q ++++ 
Sbjct: 1436 ERIRKRALQKEEVQRVVISG 1455


>gi|254425442|ref|ZP_05039160.1| SNF2 family N-terminal domain protein [Synechococcus sp. PCC 7335]
 gi|196192931|gb|EDX87895.1| SNF2 family N-terminal domain protein [Synechococcus sp. PCC 7335]
          Length = 1081

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 32/218 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANG---AVYYDEEKHWKEVHDE 54
            + Y K       ++  +               VK  Q+ N     +  D     +     
Sbjct: 846  RLYQKLVDSTLGEI--DEATGLQRRGMILGLLVKLKQICNHPAQFLQQDSLGKSRR--SG 901

Query: 55   KIKALEVIIEK--ANAAPIIVAYHF--------NSDLARL--QKAFPQGRT-LDKDPCTI 101
            K++ L+ ++E+  A     ++   F        +    RL  +  F  G T  +K    +
Sbjct: 902  KLQRLDEMLEEVVAEGDRALIFTQFAEWGKLLSSHLEHRLGTESLFLYGSTSKNKREEMV 961

Query: 102  QEWN-EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +  +   P +      + G GLNL    N +  F  WW+     Q  +R       + 
Sbjct: 962  DRFQLDPNGPKIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDR-----AFRI 1015

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V V+  +   T++E + + + +K  + + ++ A
Sbjct: 1016 GQTKNVQVHKFVCTGTLEERINEMINSKKALAEQVVGA 1053


>gi|161784309|sp|Q872I5|INO80_NEUCR RecName: Full=Putative DNA helicase ino-80
          Length = 1997

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +   N   +++ +     +  +++             G T   D+
Sbjct: 1694 VTDSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1753

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1754 RDTVADFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1807

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1808 HRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1846


>gi|320587436|gb|EFW99916.1| DNA repair and recombination protein rad54 [Grosmannia clavigera
           kw1407]
          Length = 809

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RT 93
           ++  K  +  K+  LE +   I       I++  ++ S L    RL +    G      T
Sbjct: 553 DREVKPWYSGKMMVLERMLARIRAETNDKIVLISNYTSTLDLFERLCRNRAYGCLRLDGT 612

Query: 94  LD--KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           ++  K    +  +N+  G   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 613 MNVSKRQKLVDRFNDPDGSEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 671

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R+      + G K+  FVY  IA  TI+E + QR   K ++   +++A   + +
Sbjct: 672 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSTCVVDAAAGDDV 720


>gi|224070615|ref|XP_002303179.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840611|gb|EEE78158.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1682

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
            ++   +    K++ L +++ K  +    +++       L  L+              G 
Sbjct: 663 PDRRLIQFDCGKLQELAILLRKLKSEGHRVLIFTQMTKMLDILEAFINLYGYTYMRLDGS 722

Query: 93  TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +D  T+ Q +N   KI +      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 723 TQPEDRQTLMQRFNTNPKIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 781

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 782 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 823


>gi|326434418|gb|EGD79988.1| BRG1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1726

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
            K++AL+ ++ +       +++       +  L+      +             D+     
Sbjct: 1408 KLQALDRLLSRLKKEGHRVLIYSQMTRMIDILEDFMTYRKYKYMRLDGSCKISDRRDMVA 1467

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +   I        + G G+NL    + ++F+   W+    QQ ++R       + G 
Sbjct: 1468 DFQSRDDIFAFILSTRAGGIGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AHRLGQ 1521

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V VY LI + T++E +L R + KS +  L++  
Sbjct: 1522 TRPVTVYRLITKGTVEERILHRAQEKSKVHQLVIQG 1557


>gi|268324723|emb|CBH38311.1| hypothetical protein containing helicase conserved C-terminal
           domain [uncultured archaeon]
          Length = 205

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
           +K  Q+ N    + ++         K+  LE ++E+  A     ++   F      L+  
Sbjct: 1   MKLKQITNHPALFLQDGSPLPGRSGKLARLEAMLEEVLAEGDKALIFTQFAGMGVMLRHY 60

Query: 88  FPQ-----------GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVF 134
             +           G T  +    I  +       PL      + G GLNL    N +  
Sbjct: 61  LQEKLGCETLFLHGGTTKKQRDAMILRFQTDPHGPPLFILSLKAGGIGLNLT-AANHVFH 119

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F  WW+     Q  +R+      + G ++ V V+  I   T++E + Q +  K  + + +
Sbjct: 120 FDRWWNPAVENQATDRVF-----RIGQRKNVQVHKFICIGTLEERIDQMIERKKELAESI 174

Query: 195 LNALKK 200
           + A + 
Sbjct: 175 IGAGEA 180


>gi|257463846|ref|ZP_05628233.1| SWF/SNF family helicase [Fusobacterium sp. D12]
 gi|317061380|ref|ZP_07925865.1| metal dependent hydrolase [Fusobacterium sp. D12]
 gi|313687056|gb|EFS23891.1| metal dependent hydrolase [Fusobacterium sp. D12]
          Length = 1134

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 20/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
              +  Q+ +      E K+      +K   LE I E   N   ++V  ++   +  + K+
Sbjct: 947  LNELRQITSCP----EIKNAYISSSKKEMLLEQISEAVENDHKVLVFTNYIGSIDTICKS 1002

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +         G T D+     +     K  +      + G GLNL    + +  +  W
Sbjct: 1003 LEEQEIPYLSMTGSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLT-AADTIFIYDPW 1061

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q I+R       + G  R VF Y LI ++TI+E +LQ    KS + D +++
Sbjct: 1062 WNKTVENQAIDR-----AYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLDDVIS 1114


>gi|254416145|ref|ZP_05029900.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
 gi|196177078|gb|EDX72087.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
          Length = 1059

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 24/214 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWK-EVHDEKIKA 58
              Y K   E   +++            +  ++  Q+ N      +EK  K      K+  
Sbjct: 825  ALYQKLVDESLVEIEAAEGIKRKGLILTLLMRLKQVCNHPAQLLKEKSLKDAKRSGKLLR 884

Query: 59   LEVIIEKA--NAAPIIVAYHF------------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
            L+ ++++A       ++   F                  +   +   R   ++    +  
Sbjct: 885  LQEMLDEAISEGDRALIFTQFAEWGKLLKPYLAKQFDQEILFLYGATRKKQREEMIDRFQ 944

Query: 105  NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+ +  P+L     + G GLNL    N +     WW+     Q  +R       + G  R
Sbjct: 945  NDPEGPPILILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQTR 998

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+  +   T++E +   + +K  + +  + A
Sbjct: 999  NVQVHKFVCTGTLEERINDMIESKKQLAEQTVEA 1032


>gi|209525614|ref|ZP_03274152.1| Non-specific serine/threonine protein kinase [Arthrospira maxima
            CS-328]
 gi|209493947|gb|EDZ94264.1| Non-specific serine/threonine protein kinase [Arthrospira maxima
            CS-328]
          Length = 1058

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 30/219 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH-------D 53
             Y K   E   +++               VK  Q+ N  +    +   K+          
Sbjct: 815  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKESPTLNPSYS 874

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHF-------NSDLARLQKA---FPQGRTLD-KDPCT 100
             K++ L  ++E+  +     ++   F          L         F  G T   +    
Sbjct: 875  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREILFLYGGTRKLQREQM 934

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+     Q  +R+      +
Sbjct: 935  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----R 988

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+  +   T++E +   + +K  + + ++++
Sbjct: 989  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSS 1027


>gi|320164356|gb|EFW41255.1| DNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1777

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             ++        K+  L+ ++ K  A    +++       +  L++               
Sbjct: 1456 PDRSRLITDSIKMVVLDKLLTKLKAEGHRVLIYSQMTKMIDLLEEFMNFRLHRYVRLDGQ 1515

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T++     +  +     I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1516 TTIETRNNMVSNFQTRSDIFVFLLSTRAGGVGINLT-AADTVIFYDSDWNPTVDQQAMDR 1574

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V VY LIA+ T++E +L R R KS I  +++  
Sbjct: 1575 -----SHRLGQTRQVTVYRLIAKGTVEERILARARQKSEIHKMVIAG 1616


>gi|213019863|ref|ZP_03335663.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994547|gb|EEB55195.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 917

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLA 82
                   Q+ N   ++ ++K        K++ LE I   I +      ++   +     
Sbjct: 715 LKLINALKQVCNHPSHFGKKKRASIEQSGKMQMLEEILIGISELAEKS-LIFTQYTEMGE 773

Query: 83  RLQKAFPQ-----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
            + +   +             +       + ++ N  +  +L     + G GLNL    N
Sbjct: 774 IIARLLEEKFESKVPFLHGSLSRKARDKMVNDFENSFRSNILIVSLKAGGTGLNLT-AAN 832

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ + LWW+     Q  +R       + G +R V VY L++  T +E + + +++K  +
Sbjct: 833 HVIHYDLWWNPAVEAQATDR-----AYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKEL 887

Query: 191 QDLLLNA 197
            +L +++
Sbjct: 888 ANLTISS 894


>gi|189190036|ref|XP_001931357.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972963|gb|EDU40462.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 25/200 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANG---AVYYDEEKHWKEVHDE-KIKALEVIIEK--ANA 68
            L+ +   A  + +   K  Q  N      + +     + V D  K+  L+ ++++  AN 
Sbjct: 1447 LEAKTESA--ALTVCNKLPQPTNERTRFTHIEAPSMSRFVTDSGKLAQLDALLKELKAND 1504

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGK-IPLLFAHPA 117
              +++ +     +  +++             G T  +D    + ++   + I +      
Sbjct: 1505 HRVLLYFQMTRMMDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDRSIFVFLLSTR 1564

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+     Q ++R       + G  R V VY LI + TI+
Sbjct: 1565 AGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRLGQTRQVTVYRLITRGTIE 1618

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E + +R   K  +Q ++++ 
Sbjct: 1619 ERIRKRALQKEEVQRVVISG 1638


>gi|325000735|ref|ZP_08121847.1| putative ATP-dependent helicase [Pseudonocardia sp. P1]
          Length = 571

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 27/214 (12%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
            Y     ++   ++G +      N  +   K  Q+ N       +              K
Sbjct: 329 LYRTVVDDMMEKIEGSDGIERRGNVLAAMSKLKQVCNHPAQLLHDGSPIHRAGGAHRSGK 388

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQ 102
           +  LE I+E   A    +++   +    A L+                G    +    + 
Sbjct: 389 VARLEEILESVLAAGDKVLLFTQYTEFAAMLRPHLSARFDTEVLYLHGGTPKKRRDEMVA 448

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  +G   +      + G GL L    N ++    WW+     Q  +R       + G 
Sbjct: 449 RFQGDGGPSVFLLSLKAGGTGLTLT-AANHVIHLDRWWNPAVEDQATDR-----AFRIGQ 502

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           KR+V V   +   T++E +   + +K ++ DL++
Sbjct: 503 KRSVQVRKFVCPGTVEERIDTLVASKRSLSDLVV 536


>gi|289616366|emb|CBI56893.1| unnamed protein product [Sordaria macrospora]
          Length = 2008

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +   N   +++ +     +  +++             G T   D+
Sbjct: 1704 VTDSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1763

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1764 RDTVADFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1817

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1818 HRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1856


>gi|145616124|ref|XP_361006.2| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
 gi|145009888|gb|EDJ94544.1| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
          Length = 819

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I       I++  ++ S L    RL +    G       
Sbjct: 567 DREIKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTSTLDLFERLCRNRGYGSLRLDGT 626

Query: 95  ---DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               K    + ++N  EG   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 627 MNVTKRQKLVDKFNDPEGSEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 685

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 686 RVW-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 735


>gi|22775414|dbj|BAC11858.1| recombinational repair protein [Magnaporthe grisea]
          Length = 803

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I       I++  ++ S L    RL +    G       
Sbjct: 551 DREIKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTSTLDLFERLCRNRGYGSLRLDGT 610

Query: 95  ---DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               K    + ++N  EG   +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 611 MNVTKRQKLVDKFNDPEGSEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 669

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 670 RVW-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 719


>gi|297583813|ref|YP_003699593.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297142270|gb|ADH99027.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 919

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
            Y     E++   +        +A     +K  QL N      +E     +      K  
Sbjct: 691 MYKAVVEEMFDQYEEAPDPVKRAALFKTMMKLKQLCNHPAQARKELGLNRFNPGRSPKWD 750

Query: 58  ALEVIIE--KANAAPIIVAYHFNS------DLARLQKAFP-----QGRTLDKDPCTIQEW 104
               ++          IV   F        ++  +Q   P      G T  +    I+ +
Sbjct: 751 LANELLSNWANQGKRAIVFTQFRYTGAMFQEMQLIQGNPPVPFLHGGLTAIQRKNMIRSF 810

Query: 105 -NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +   IP +     + G GLNL    + ++ F  WW+     Q  +R+      + G K+
Sbjct: 811 KDNPDIPFMIISLRAGGFGLNLTE-ASAVLHFDRWWNPAVEDQATDRV-----HRIGQKQ 864

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           AV V+ L+A+ TI+E +   ++ K  +Q+ L++ 
Sbjct: 865 AVEVHTLMAEGTIEERIDDLIQKKQQLQEALIDG 898


>gi|257452288|ref|ZP_05617587.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1134

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 20/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
              +  Q+ +      E K+      +K   +E I+E   N   ++V  ++   +  + K+
Sbjct: 947  LNELRQITSCP----EVKNSYISSSKKEMLIEQIVEAVENDHKVLVFTNYIGSIENICKS 1002

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +         G T D+     +     K  +      + G GLNL    + +  +  W
Sbjct: 1003 LEEREIAYLSMTGSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLT-AADTIFIYDPW 1061

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q I+R       + G  R VF Y LI ++TI+E +LQ    KS + D +++
Sbjct: 1062 WNKTVENQAIDR-----AYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLDDVIS 1114


>gi|315917068|ref|ZP_07913308.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690943|gb|EFS27778.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1143

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 20/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
              +  Q+ +      E K+      +K   +E I+E   N   ++V  ++   +  + K+
Sbjct: 956  LNELRQITSCP----EVKNSYISSSKKEMLIEQIVEAVENDHKVLVFTNYIGSIENICKS 1011

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +         G T D+     +     K  +      + G GLNL    + +  +  W
Sbjct: 1012 LEEREIAYLSMTGSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLT-AADTIFIYDPW 1070

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q I+R       + G  R VF Y LI ++TI+E +LQ    KS + D +++
Sbjct: 1071 WNKTVENQAIDR-----AYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLDDVIS 1123


>gi|257465912|ref|ZP_05630223.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1134

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 20/178 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
              +  Q+ +      E K+      +K   +E I+E   N   ++V  ++   +  + K+
Sbjct: 947  LNELRQITSCP----EVKNSYISSSKKEMLIEQIVEAVENDHKVLVFTNYIGSIENICKS 1002

Query: 88   FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +         G T D+     +     K  +      + G GLNL    + +  +  W
Sbjct: 1003 LEEREIAYLSMTGSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLT-AADTIFIYDPW 1061

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q I+R       + G  R VF Y LI ++TI+E +LQ    KS + D +++
Sbjct: 1062 WNKTVENQAIDR-----AYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLDDVIS 1114


>gi|260946861|ref|XP_002617728.1| hypothetical protein CLUG_03172 [Clavispora lusitaniae ATCC 42720]
 gi|238849582|gb|EEQ39046.1| hypothetical protein CLUG_03172 [Clavispora lusitaniae ATCC 42720]
          Length = 1284

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++++   N   ++V +     +  +++                 L+     
Sbjct: 1059 SGKLSKLDKLLDELKQNDHRVLVYFQMTKMMDLMEEFLTFRQHNYVRLDGSSKLEDRRDL 1118

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  + +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1119 VHDWQTKPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1172

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1173 GQTKQVTVYRLLTKGTIEERMRDRAKQKEQVQQVVMEG 1210


>gi|158339003|ref|YP_001520180.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
 gi|158309244|gb|ABW30861.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
          Length = 1091

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 37/221 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVY--YDEEKHWKEVH 52
            K Y    +E       + ++A           +  VK  Q+ N      ++E        
Sbjct: 853  KLYQTTVQESL-----DAVDAAKGIQRRGIILATLVKLKQICNHPAQYLHEETLDLDLQR 907

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDP 98
              K+K L+ ++E+        ++   F ++L +L + + Q            G +  +  
Sbjct: 908  SGKLKRLQEMLEELLDEGDRALIFTQF-AELGKLLQQYLQTKLQRETLLLYGGSSKKQRE 966

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +        +      + G GLNL    N +  F  WW+     Q  +R+     
Sbjct: 967  SMIDRFQHDPQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF---- 1021

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V V+  +   T++E + ++L +K  + + ++ A
Sbjct: 1022 -RIGQTRNVQVHKFVCTGTLEERIHEQLESKKALAEQVVGA 1061


>gi|309364522|emb|CAP24766.2| hypothetical protein CBG_03965 [Caenorhabditis briggsae AF16]
          Length = 1109

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 53   DEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT- 100
              K+KA   I+ +A      ++V   + S L  ++K   +         G+ L KD    
Sbjct: 937  SCKMKATLEILNEATEKNEKVVVVSQWTSVLDLIKKHVKENGIRYTSITGQVLVKDRQER 996

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 997  VDSFNQEKGGANVMLLSLTAGGVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YR 1050

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G K+ VF++ L+  NTI++ V +  ++K  +   +L+      +
Sbjct: 1051 MGQKKPVFIHRLVTNNTIEQRVAELQKSKLQLASSILDGTATRKM 1095


>gi|146299520|ref|YP_001194111.1| non-specific serine/threonine protein kinase [Flavobacterium
           johnsoniae UW101]
 gi|146153938|gb|ABQ04792.1| Non-specific serine/threonine protein kinase [Flavobacterium
           johnsoniae UW101]
          Length = 966

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 25/211 (11%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y + +   R       G   +  +  +  +K  QL+N     D+E    E+   K  A
Sbjct: 747 KLYEQEKSKARNFLLKTDGSGPDKISIINTLMKLRQLSNHPKMVDQE---SEIDSGKYIA 803

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNE 106
           +   +E        +I+   F ++L          ++      G T   K    ++ + E
Sbjct: 804 VTNYLENLVKAKQKVIIFSSFVTNLNFYTDWCKENKITYCEITGETPAAKREQQVKLFQE 863

Query: 107 GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + PL  F    + G GLN+    + ++F   WW+    +Q     GV R  + G    V
Sbjct: 864 KEEPLLFFISLKAGGVGLNITK-ASYVLFLDPWWNPFAEKQ-----GVGRAHRIGQLNKV 917

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V   I++NT++E +++    K  + D LL 
Sbjct: 918 NVVRFISKNTVEEKIIKLQENKKLLSDSLLE 948


>gi|158333854|ref|YP_001515026.1| SNF2 family helicase putative [Acaryochloris marina MBIC11017]
 gi|158304095|gb|ABW25712.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
          Length = 1060

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 28/213 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIK 57
             Y    +E+  D+  + ++         S  +K  Q+ N    +  +E  +      K+ 
Sbjct: 828  LYEAVVKEISKDI--DEVDGIQRKGMILSTLLKLKQICNHPRQFLQDESDFTPERSHKLS 885

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             L  +I +       ++V   F      L+K   Q           G   +K    I E+
Sbjct: 886  RLTEMITEVMEEGESLLVFTQFTELGDALEKYLRQTHHYTTYYIHGGTNRNKREQMITEF 945

Query: 105  NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             + +    +      + G G+ L    N +  F  WW+     Q  +R       + G K
Sbjct: 946  QDPETGPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVEDQATDR-----AFRIGQK 999

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + VFV+  +A  T++E + + +  K  +   ++
Sbjct: 1000 KNVFVHKFVAIGTLEERIDEMIEDKKKLAGAIV 1032


>gi|255083104|ref|XP_002504538.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226519806|gb|ACO65796.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1999

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++AL  +  ++K+    +++       L  L+              G 
Sbjct: 1186 PDRRLVQFDCGKLQALATLLRMKKSGGHKVLIFTQMTKMLDILEAFLNLYGYPYCRLDGT 1245

Query: 93   TLDKDPC-TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +     +Q +N + ++        S G G+NL  G + +VF+   W+    QQ    
Sbjct: 1246 TRPEQRQIMMQRFNTDPRLFAFILSTRSGGFGINLT-GADTVVFYDSDWNPAMDQQA--- 1301

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y L+ + TI+E +L++   K  +    + A
Sbjct: 1302 --QDRAHRIGQTREVHIYRLVCKGTIEENILRKSMQKRELDHFAIQA 1346


>gi|215487691|ref|YP_002330122.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967725|ref|ZP_07781940.1| putative helicase [Escherichia coli 2362-75]
 gi|215265763|emb|CAS10170.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287922|gb|EFR15827.1| putative helicase [Escherichia coli 2362-75]
          Length = 1149

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
              Y    RE    ++GE+ +AF          +   Q+ N   +Y + K        K +
Sbjct: 921  AIYASVVREGMQVIRGES-DAFQRQGLVLQMIMALKQVCNHPAHYLKNKQMDAALSGKAQ 979

Query: 58   ALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR-------------TLDKDPCTIQ 102
             L  +++        +++   F  ++  L +++   R                +D    +
Sbjct: 980  LLLDLLDSIEETTEKVLIFTQFK-EMGELLQSWLTARYGEQPLFLHGGLSRKKRDEQVER 1038

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+  +        + G GLNL    + ++ + LWW+     Q  +R       + G +
Sbjct: 1039 FQNDRSVRHFILSLKAGGTGLNLT-AASQVIHYDLWWNPAVEAQATDR-----AYRIGQQ 1092

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V V+ L+ + T +E +   +R K  + ++ +
Sbjct: 1093 RNVQVHRLLTRETFEERINDMIRNKKALAEMTV 1125


>gi|292559006|gb|ADE32007.1| SWIM domain-containing protein [Streptococcus suis GZ1]
          Length = 1037

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F + L ++++   +              ++     Q +N G         
Sbjct: 884  GEHRVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAFLISL 943

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G + ++   LWW+     Q I R       + G    V  Y LI + TI
Sbjct: 944  KAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQTEKVECYRLITRGTI 997

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +    K  +   +L+ 
Sbjct: 998  EEKIQELQENKKNLVKTVLDG 1018


>gi|317058831|ref|ZP_07923316.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
 gi|313684507|gb|EFS21342.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1009

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
             +  Q+ +      E K+      +K   +E I+E   N   ++V  ++   +  + K+
Sbjct: 822 LNELRQITSCP----EVKNSYISSSKKEMLIEQIVEAVENDHKVLVFTNYIGSIENICKS 877

Query: 88  FPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             +         G T D+     +     K  +      + G GLNL    + +  +  W
Sbjct: 878 LEEREIAYLSMTGSTKDRQQLVNKFQKNEKYKVFVMTLKTGGVGLNLT-AADTIFIYDPW 936

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+     Q I+R       + G  R VF Y LI ++TI+E +LQ    KS + D +++
Sbjct: 937 WNKTVENQAIDR-----AYRLGQDRTVFSYKLILKDTIEEKILQLQELKSKLLDDVIS 989


>gi|253752403|ref|YP_003025544.1| putative helicase [Streptococcus suis SC84]
 gi|253754229|ref|YP_003027370.1| helicase [Streptococcus suis P1/7]
 gi|253756163|ref|YP_003029303.1| helicase [Streptococcus suis BM407]
 gi|251816692|emb|CAZ52333.1| putative helicase [Streptococcus suis SC84]
 gi|251818627|emb|CAZ56461.1| putative helicase [Streptococcus suis BM407]
 gi|251820475|emb|CAR47204.1| putative helicase [Streptococcus suis P1/7]
 gi|319758808|gb|ADV70750.1| SNF2 family DNA/RNA helicase [Streptococcus suis JS14]
          Length = 1030

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F + L ++++   +              ++     Q +N G         
Sbjct: 877  GEHRVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAFLISL 936

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G + ++   LWW+     Q I R       + G    V  Y LI + TI
Sbjct: 937  KAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQTEKVECYRLITRGTI 990

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +    K  +   +L+ 
Sbjct: 991  EEKIQELQENKKNLVKTVLDG 1011


>gi|308472052|ref|XP_003098255.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
 gi|308269241|gb|EFP13194.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
          Length = 205

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN 105
           ++ L  I+EK     +++   + S L  +++   Q                    +  +N
Sbjct: 40  LQILSNIVEK--GEKVVIVSQWTSVLELIEEHIKQYAIRYTSITGQIPVKDRQERVDSFN 97

Query: 106 E--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      + G K+
Sbjct: 98  REVGGAKVMLLSLTAGGVGLNLT-GGNHLIMIDLHWNPALEQQAFDRI-----YRMGQKK 151

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            VF++ LI + TI++ V++  ++K T+   +L+      +
Sbjct: 152 PVFIHRLITKGTIEQRVVELQKSKLTLASSVLDGTATRKM 191


>gi|268565237|ref|XP_002639379.1| Hypothetical protein CBG03965 [Caenorhabditis briggsae]
          Length = 1094

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 53   DEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT- 100
              K+KA   I+ +A      ++V   + S L  ++K   +         G+ L KD    
Sbjct: 922  SCKMKATLEILNEATEKNEKVVVVSQWTSVLDLIKKHVKENGIRYTSITGQVLVKDRQER 981

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 982  VDSFNQEKGGANVMLLSLTAGGVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YR 1035

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G K+ VF++ L+  NTI++ V +  ++K  +   +L+      +
Sbjct: 1036 MGQKKPVFIHRLVTNNTIEQRVAELQKSKLQLASSILDGTATRKM 1080


>gi|146319376|ref|YP_001199088.1| SNF2 family DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321581|ref|YP_001201292.1| SNF2 family DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|145690182|gb|ABP90688.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus suis
            05ZYH33]
 gi|145692387|gb|ABP92892.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus suis
            98HAH33]
          Length = 1037

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F + L ++++   +              ++     Q +N G         
Sbjct: 884  GEHRVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAFLISL 943

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G + ++   LWW+     Q I R       + G    V  Y LI + TI
Sbjct: 944  KAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQTEKVECYRLITRGTI 997

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +    K  +   +L+ 
Sbjct: 998  EEKIQELQENKKNLVKTVLDG 1018


>gi|46447118|ref|YP_008483.1| hypothetical protein pc1484 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400759|emb|CAF24208.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1256

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 78/205 (38%), Gaps = 20/205 (9%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
             + +R L  DL+ +   I   +  +      Q+ N  AV+      +++    K +    
Sbjct: 1022 EQRKRHLMQDLKDDQTPIPYLHIFALLSSLKQICNHPAVHLKNPGDYQKYSSGKWELFIE 1081

Query: 62   IIEKANA--APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIP 110
            ++ +A      +++   +   L  ++              G T ++     +  ++    
Sbjct: 1082 LLREARESQQKVVIFSQYLGMLDIIENYLNDQKIGYASIRGSTQNRKEQLQKFNHDPSCE 1141

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G++L    ++++ +  WW+     Q  +R+      + G  + V V+ L
Sbjct: 1142 VFVGSLQAAGLGIDLT-AASVVIHYDRWWNAARENQATDRV-----HRIGQMKGVQVFKL 1195

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            + + T +E +   +  K  + + ++
Sbjct: 1196 VTKGTFEEKIDAMINRKGQLMEEII 1220


>gi|19347965|gb|AAL86315.1| putative helicase [Arabidopsis thaliana]
          Length = 744

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
               K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 440 TDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRR 499

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 500 DMVRDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 553

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  + V VY LI + T++E +L R   K+T+Q L++  
Sbjct: 554 RLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 593


>gi|326484392|gb|EGE08402.1| DNA repair and recombination protein RAD54 [Trichophyton equinum
           CBS 127.97]
          Length = 820

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL +A   G 
Sbjct: 558 SNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYGC 617

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    + ++N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 618 IRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 676

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 677 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVER 731

Query: 204 H 204
           H
Sbjct: 732 H 732


>gi|88812636|ref|ZP_01127883.1| helicase, SNF2 family protein [Nitrococcus mobilis Nb-231]
 gi|88790052|gb|EAR21172.1| helicase, SNF2 family protein [Nitrococcus mobilis Nb-231]
          Length = 1171

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 23/211 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
              Y    RE    +QGE+             +   Q+ N    Y  +     +H  K + 
Sbjct: 944  AVYESVVREGLEVIQGESDTFQRQGLVLQMILALKQICNHPRQYLNDGATTPMHSGKAQR 1003

Query: 59   LEVIIEKANA--APIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQEW 104
            L  ++ + +     ++V   F      LQ    +                 +D    +  
Sbjct: 1004 LLELLTETHRLHEKVLVFTQFRKAGELLQGWIAEAFGRTPAFLHGGLSRKQRDALVERFQ 1063

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             E    +      + G GLNL    + +V F LWW+     Q  +R       + G  + 
Sbjct: 1064 GERTERVFILSLKAAGTGLNLT-AASQVVHFDLWWNPAVEAQATDR-----AYRIGQSQT 1117

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V+ LI + T +E +   +R+K  + +L +
Sbjct: 1118 VQVHRLITRATFEERINAMIRSKRALSELTV 1148


>gi|728695|emb|CAA88537.1| DNA helicase type protein [Saccharomyces cerevisiae]
          Length = 674

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K++ L+ ++ K  +    +++ +     +  +++                 L+     
Sbjct: 483 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 542

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 543 VHDWQTNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 596

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 597 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEG 634


>gi|242793727|ref|XP_002482225.1| SNF2 family helicase/ATPase (Ino80), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218718813|gb|EED18233.1| SNF2 family helicase/ATPase (Ino80), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1662

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1373 VTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1432

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    +  +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1433 RDTVADFQHRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1486

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1487 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1527


>gi|68006105|ref|NP_001018299.1| SNF2 family helicase Ino80 [Schizosaccharomyces pombe 972h-]
 gi|206557976|sp|O14148|INO80_SCHPO RecName: Full=Putative DNA helicase ino80
 gi|159884046|emb|CAB16246.2| SNF2 family helicase Ino80 [Schizosaccharomyces pombe]
          Length = 1604

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  L+ ++ +  AN   +++ +     +  +++                 + +   
Sbjct: 1427 DSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1486

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + EW    ++ +      + G G+NL    + ++F+   W+     Q ++R       +
Sbjct: 1487 MVTEWQTRPELFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPSIDSQAMDR-----AHR 1540

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G ++ V VY  I + TI+E ++ R + K  +Q ++++  +     
Sbjct: 1541 IGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPTK 1586


>gi|121806946|sp|Q2UTQ9|INO80_ASPOR RecName: Full=Putative DNA helicase ino80
 gi|83764912|dbj|BAE55056.1| unnamed protein product [Aspergillus oryzae]
          Length = 1444

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1212 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1271

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1272 RDTVADFQQRPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1325

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1326 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1366


>gi|262199410|ref|YP_003270619.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262082757|gb|ACY18726.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 1019

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 21/187 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S  +   Q+ N    Y  E         K++ +  ++E+A   +   +V   F     R
Sbjct: 775 LSLLMGLKQICNHPAQYLGEAGPLRRRSGKLERVTEMLEEALAGSDKALVFTQFREMGER 834

Query: 84  LQKAFPQ------------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGN 130
           L   F               R   +D    +   +   P +      + G GLNL    +
Sbjct: 835 LVAHFEDRLGVEVAFLHGGTRRSARDEMVRRFQEQPNGPRVFVLSVKAGGVGLNLT-AAS 893

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +  F  WW+     Q  +R       + G    V VY  +   T++E + + L  K  +
Sbjct: 894 HVFHFDRWWNPAVEDQATDR-----AYRIGQTHIVQVYKFLCAGTLEEKIDRMLTKKREL 948

Query: 191 QDLLLNA 197
              +++A
Sbjct: 949 ASQVVSA 955


>gi|299538009|ref|ZP_07051295.1| ATP-dependent helicase [Lysinibacillus fusiformis ZC1]
 gi|298726591|gb|EFI67180.1| ATP-dependent helicase [Lysinibacillus fusiformis ZC1]
          Length = 921

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 23/189 (12%)

Query: 26  ASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA-----NAAPIIVAYHFNS 79
                K  QL N  A+Y  E     E    +   LE I++ A     N    ++   +  
Sbjct: 719 LKMLSKLKQLCNHPALYLKEPFEDAETMLARSTKLERIVQMAAEIVDNGEQCLIFTQYIG 778

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               LQ  F +                +    ++ +  G  P+      + G GLNL   
Sbjct: 779 MGQLLQHCFSEIYNVDAPFLTGAMPKQQRDRLVEAFQAGDFPIFILSLKAGGTGLNLT-A 837

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++    WW+     Q  +R       + G  + V V+  +   TI+E + + L  KS
Sbjct: 838 ANHVLHADRWWNPAVENQATDR-----AYRIGQTQFVQVHKFVTIGTIEEKIDKMLVQKS 892

Query: 189 TIQDLLLNA 197
            + + L+ +
Sbjct: 893 ALSEELIQS 901


>gi|150864264|ref|XP_001383014.2| DNA ATP-dependent helicase [Scheffersomyces stipitis CBS 6054]
 gi|149385520|gb|ABN64985.2| DNA ATP-dependent helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1269

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+  L+ ++ +   N   +++ +     +  +++                 LD     + 
Sbjct: 1033 KLAKLDELLVELKQNDHRVLIYFQMTRMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDLVH 1092

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +W  + +I +      + G G+NL    + ++F+   W+     Q ++R       + G 
Sbjct: 1093 DWQTKPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRLGQ 1146

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1147 TRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEG 1182


>gi|308178507|ref|YP_003917913.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307745970|emb|CBT76942.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1049

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
             +   K  Q+ N       +         K+  LE ++E+  A    ++    +      
Sbjct: 844  LAAMAKLKQVCNHPAQLLHDGSTVAGRSGKVARLEELLEQIVAEGDKVLCFTQYTEFAQM 903

Query: 84   LQKAFP-----------QGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
            L                 G +  K    +Q +     P +      + G GLNL    N 
Sbjct: 904  LLPHLASRLDAEVFYLHGGTSRAKRTELVQRFQATDRPAIFLLSLKAGGTGLNLT-AANH 962

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++    WW+     Q  +R       + G KR V V   I + T++E + + ++ K  + 
Sbjct: 963  VLHLDRWWNPAVENQATDR-----AFRIGQKRNVQVRKFICRGTLEERIDEMIKDKQALA 1017

Query: 192  DLLL 195
            DL++
Sbjct: 1018 DLVV 1021


>gi|302655807|ref|XP_003019687.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
 gi|291183425|gb|EFE39042.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
          Length = 629

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL +A   G 
Sbjct: 367 SNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYGC 426

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    + ++N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 427 IRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 485

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 486 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVER 540

Query: 204 H 204
           H
Sbjct: 541 H 541


>gi|223933727|ref|ZP_03625701.1| Non-specific serine/threonine protein kinase [Streptococcus suis
            89/1591]
 gi|223897608|gb|EEF63995.1| Non-specific serine/threonine protein kinase [Streptococcus suis
            89/1591]
          Length = 1030

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F + L ++++   +              ++     Q +N G         
Sbjct: 877  GEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAFLISL 936

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G + ++   LWW+     Q I R       + G    V  Y LI + TI
Sbjct: 937  KAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQTEKVECYRLITRGTI 990

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +    K  +   +L+ 
Sbjct: 991  EEKIQELQENKKNLVKTVLDG 1011


>gi|302024348|ref|ZP_07249559.1| SNF2 family DNA/RNA helicase [Streptococcus suis 05HAS68]
 gi|330833343|ref|YP_004402168.1| Non-specific serine/threonine protein kinase [Streptococcus suis ST3]
 gi|329307566|gb|AEB81982.1| Non-specific serine/threonine protein kinase [Streptococcus suis ST3]
          Length = 1030

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F + L ++++   +              ++     Q +N G         
Sbjct: 877  GEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAFLISL 936

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G + ++   LWW+     Q I R       + G    V  Y LI + TI
Sbjct: 937  KAGGVGLNLT-GADTVILVDLWWNPAVEAQAISR-----AHRMGQTEKVECYRLITRGTI 990

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +    K  +   +L+ 
Sbjct: 991  EEKIQELQENKKNLVKTVLDG 1011


>gi|302504353|ref|XP_003014135.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
 gi|291177703|gb|EFE33495.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
          Length = 790

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL +A   G 
Sbjct: 528 SNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYGC 587

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    + ++N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 588 IRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 646

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 647 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVER 701

Query: 204 H 204
           H
Sbjct: 702 H 702


>gi|46446009|ref|YP_007374.1| swi/snf helicase family protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399650|emb|CAF23099.1| putative rapA, a bacterial member of the swi/snf helicase family
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 893

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 79/214 (36%), Gaps = 25/214 (11%)

Query: 2   KQYHKF----QRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDE--EKHWKEVHD 53
           + Y +F    +R L+  ++ E I           ++  Q+    +      E+    +  
Sbjct: 668 QHYEQFLANFKRNLFKKIEAEGITKHRLEVLEAILRLRQICCHPLLVSSIIEEKEDLITS 727

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQ 102
            K   L   ++  +     ++V   F S L  + +         A+  G T +++    +
Sbjct: 728 AKFDLLMQDLQTIREEGRKVLVYSQFTSMLKLMTRYANQQGWTYAYLDGSTQNREKVVTE 787

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +  + F    + G GLNL    + ++ +  WW+    +Q I R       + G +
Sbjct: 788 FQENLEQSIFFISLKAGGVGLNLT-AADYVILYDPWWNEAVEEQAINR-----AHRIGRQ 841

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V     +   +I+E +++    K T+ D + +
Sbjct: 842 EQVIAKRFVVIESIEEKMMKLKAAKRTLVDDIFD 875


>gi|30694618|ref|NP_191289.2| INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic
            acid binding [Arabidopsis thaliana]
 gi|238065083|sp|Q8RXS6|INO80_ARATH RecName: Full=DNA helicase INO80 complex homolog 1; Short=AtINO80
          Length = 1507

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1203 TDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRR 1262

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1263 DMVRDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1316

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +L R   K+T+Q L++  
Sbjct: 1317 RLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 1356


>gi|196014691|ref|XP_002117204.1| hypothetical protein TRIADDRAFT_61248 [Trichoplax adhaerens]
 gi|190580169|gb|EDV20254.1| hypothetical protein TRIADDRAFT_61248 [Trichoplax adhaerens]
          Length = 1395

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 37   NGAVYYD-EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----- 88
            NG  Y    +K        K++ L+V+++K       +++       +  L++       
Sbjct: 1018 NGWSYMAIPDKKSLVTDSGKLRILDVLLKKLKFEGHRVLIYSQMTRMIDLLEEYMGFRKH 1077

Query: 89   -----PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      +      + ++     I        + G G+NL    + ++F+   W+  
Sbjct: 1078 IYMRLDGSSKISDRRDMVADFQSKSDIFAFLLSTRAGGLGINLT-AADTVIFYDSDWNPT 1136

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              QQ ++R       + G  + V VY L+   TI+  +L+R + KS IQ ++++ 
Sbjct: 1137 VDQQAMDR-----AHRLGQTKQVTVYRLVTSGTIENRILKRAQEKSEIQKMVISG 1186


>gi|331000570|ref|ZP_08324240.1| helicase protein [Parasutterella excrementihominis YIT 11859]
 gi|329571277|gb|EGG52970.1| helicase protein [Parasutterella excrementihominis YIT 11859]
          Length = 133

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 80  DLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           D A ++  +  G     +    ++ +  G +PL      + G GLNL    + ++    W
Sbjct: 2   DKAGIEYLYLDGSVPAAQRKKLVETFQNGDMPLFLISLKAGGTGLNLT-AADYVIHLDPW 60

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+     Q  +R       + G KR V +Y LI++ T+++ +L+  +TK  + D LL  
Sbjct: 61  WNPAVEDQASDR-----AYRIGQKRPVTIYKLISEKTVEQKILELHKTKKNLADALLEG 114


>gi|58697007|ref|ZP_00372482.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536740|gb|EAL60000.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 773

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL 84
                  Q+ N    + ++K        K++ LE I+          ++   +      +
Sbjct: 572 KLINALKQICNHPSQFGKKKRASIEQSGKMQMLEEILISIGEVAEKSLIFTQYTEMGEII 631

Query: 85  QKAFPQ-----------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
            +   +           G +       I ++    +  +L     + G GLNL    N +
Sbjct: 632 ARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGGTGLNLT-AANHV 690

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + + LWW+     Q  +R       + G +R V VY L++  T +E + + +++K  + +
Sbjct: 691 IHYDLWWNPAVEAQATDR-----AYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKELAN 745

Query: 193 LLLNA 197
           L +++
Sbjct: 746 LTISS 750


>gi|300868337|ref|ZP_07112963.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333630|emb|CBN58149.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 1109

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 78/217 (35%), Gaps = 28/217 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
             Y K   E    ++  +         +  VK  Q+ N  +   EE   K++        K
Sbjct: 869  IYQKVVEESLAAIESADGIQRRGMILALLVKLKQICNYPILSKEEGKSKKLEINSQESGK 928

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--GRTL---------DKDPCTIQ 102
            ++ L+ ++E+  +     ++   F      L+    +  GR +          +    I 
Sbjct: 929  LQRLDEMLEEVLSAEDRALIFTQFAEWGHLLKAHLEKHLGREILFLYGGTRQQQREEMID 988

Query: 103  EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +       P++     + G GLNL    + +  +  WW+     Q  +R+      + G
Sbjct: 989  RFQHDPQGPPIMILSLKAGGTGLNLTRATH-VFHYDRWWNPAVENQATDRVF-----RIG 1042

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V V+  +   T++E +   + +K  + + ++  
Sbjct: 1043 QTRNVQVHKFVCTGTLEEKIHDMIESKKALAEQVVGG 1079


>gi|260818894|ref|XP_002604617.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
 gi|229289945|gb|EEN60628.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
          Length = 1277

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              Q+ N    + +  +       K+K L  +++        +++   +   +  + +   
Sbjct: 1084 LKQICNHPANFTKNSNRDIQASGKMKVLIDLLQPILQQGEKVLIFSQYVQMIKLMAQMVE 1143

Query: 90   ---QGRTL---------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               + + L          +D  T     +    ++     + G GLNL    N ++ + L
Sbjct: 1144 AHFKVKPLIFEGSMSQQKRDEATTAFQTQPHRQIMIVSLQAGGVGLNLT-AANHVIHYDL 1202

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W++  +  Q  +R       + G  + VFVY  I++NT +E +   L  K  + DL + A
Sbjct: 1203 WFNPAKENQATDR-----AFRIGQTKTVFVYRFISENTFEEKINVMLEKKKDLSDLSVQA 1257


>gi|260943410|ref|XP_002616003.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
 gi|238849652|gb|EEQ39116.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
          Length = 879

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 23/169 (13%)

Query: 45  EKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            +  +     K   LE     I  + N   I+V  ++   L  ++K              
Sbjct: 627 GREIQTWFSAKFSILERFLHQIRTQTNDK-IVVISNYTRTLDLIEKMCRYKRYGSLRLDG 685

Query: 91  GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T++K    +  +N  EG   +      + G G+NL  G N LV     W+    QQ +
Sbjct: 686 TMTINKRQKIVDRFNDPEGNEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPAADQQAL 744

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R+      + G K+  F+Y  +   TI+E + QR   K ++   +++A
Sbjct: 745 ARVW-----RDGQKKDCFIYRFMCTGTIEEKIFQRQSMKLSLSSCVVDA 788


>gi|167517042|ref|XP_001742862.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779486|gb|EDQ93100.1| predicted protein [Monosiga brevicollis MX1]
          Length = 470

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTI 101
            K++ L+ ++ +  A    +++       +  L++                 + +    +
Sbjct: 319 AKLQVLDDMLRRLKAGGHRVLIYSQMTKMIDLLEEFLTHRQYKYVRLDGSSKISERRDMV 378

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++     I        + G G+NL    + ++F+   W+    QQ ++R       + G
Sbjct: 379 ADFQSRDDIFAFILSTRAGGIGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AHRLG 432

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V VY LI +N+++E +L R + KS +  +++  
Sbjct: 433 QTRTVTVYRLITRNSVEERILARAQEKSKVHQMVIQG 469


>gi|84619206|emb|CAJ42330.1| SNF2 related domain [Streptomyces steffisburgensis]
          Length = 618

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 23/211 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYY----DEEKHWKEVHDEK 55
           ++ Y +     + +  G  IE      +      Q+ N    Y              D  
Sbjct: 386 VRLYREAVDRAFDEGLGGGIERRGRVLALLTSLKQICNHPAQYLREEAAGTGRSGKFDRA 445

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL--ARLQKAFPQGRTL--------DKDPCTIQEWN 105
            + L  I++  + A +   Y    DL    L +    G           DK    + ++ 
Sbjct: 446 AEMLAEIVDDGDRALVFTQYRVMGDLLAGHLSQHLGTGPIPFLHGGLSPDKRDRLVHDFQ 505

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E     P+L     + G GLNL    N ++ +  WW+    +Q  +R       + G +R
Sbjct: 506 ESDDAPPVLLLSLRAAGFGLNLTR-ANHVMHYDRWWNPAVEEQATDR-----AHRIGQQR 559

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + V+ L+   TI++ + Q   TK    D++
Sbjct: 560 TLNVHALVTGGTIEDHIAQMHETKRGFADVV 590


>gi|327441412|dbj|BAK17777.1| superfamily II DNA/RNA helicase, SNF2 family [Solibacillus
           silvestris StLB046]
          Length = 925

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 29/219 (13%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAV------YYDEEKHWKEVHD 53
             Y  + ++    L+      +         K  QL N         + D          
Sbjct: 693 AHYEGYIQDTLATLEELTGFEKKGRILKMLNKLKQLCNHPALFLKEPFEDANTMVSRSVK 752

Query: 54  EK--IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            K  I+  + II+  N    ++   +      +Q    +               ++    
Sbjct: 753 LKRIIEMTKEIID--NGEQCLIFTQYIGMGNLIQHCLTELYNVEVPFLTGSMPKNQRDNL 810

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + ++  G+ P+      + G GLNL    ++L     WW+     Q  +R       + G
Sbjct: 811 VDQFQAGEFPVFLLSLKAGGTGLNLTAATHVL-HADRWWNPAVENQATDR-----AYRIG 864

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V V+  +   TI+E + + +  KS + + L+ + K
Sbjct: 865 QTQFVQVHKFVTIGTIEEKIDKMIAMKSALSEELIQSSK 903


>gi|315053993|ref|XP_003176371.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
 gi|311338217|gb|EFQ97419.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
          Length = 831

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL +A   G 
Sbjct: 569 SNGRRGDREVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYGC 628

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    + ++N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 629 IRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 687

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 688 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVER 742

Query: 204 H 204
           H
Sbjct: 743 H 743


>gi|297817054|ref|XP_002876410.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297322248|gb|EFH52669.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1507

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1203 TDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRR 1262

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1263 DMVRDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1316

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V VY LI + T++E +L R   K+T+Q L++  
Sbjct: 1317 RLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 1356


>gi|255931991|ref|XP_002557552.1| Pc12g07170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582171|emb|CAP80344.1| Pc12g07170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1665

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +       +++ +     +  +++             G T   D+
Sbjct: 1375 VTDSGKLAKLDQLLRELKPGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1434

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    +  +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1435 RDTVSDFQSNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1488

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1489 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVITG 1529


>gi|319950443|ref|ZP_08024358.1| helicase [Dietzia cinnamea P4]
 gi|319435907|gb|EFV91112.1| helicase [Dietzia cinnamea P4]
          Length = 935

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANG-AVYYDEEKHWKEVH---DEKI 56
            Y     ++   ++     A   A  +      Q+ N  A Y  +             K+
Sbjct: 700 LYQAVVEDMMEQVKESEGTARKGAILSGLTALKQVCNHPAHYLGDGSALLRGGRHRSGKL 759

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
            AL+ ++ +       +++   + +    +     +           G T       ++E
Sbjct: 760 AALDEVLTEILDAGEKVLLFTQYRAFGDLILPLLERRAASSVPFLHGGVTAAGRAQMVEE 819

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   +  P++ A   + G GL L    N +V    WW+     Q  +R+      + G  
Sbjct: 820 FQSTQGPPVMLASLRAGGTGLTLTE-ANHVVHLDRWWNPAVENQATDRV-----HRIGQT 873

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R V V  L+A  T+++ + + L  K  + +L L
Sbjct: 874 RRVQVRTLVAPGTVEDRIDELLEAKRDLAELTL 906


>gi|242021397|ref|XP_002431131.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516380|gb|EEB18393.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 745

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 18/162 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
            +  L  +I+      I++  ++   L   +K                T+ K    ++++
Sbjct: 501 FLDTLLALIKATTNDKIVLVSNYTQTLDLFEKLSRFRNYQYVRLDGSMTIKKRGKVVEKF 560

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+ +    +      + G GLNL  G N LV F   W+     Q + R+      + G K
Sbjct: 561 NDPESKDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQK 614

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +  F+Y L++  TI+E + QR   K  +   +++  +    H
Sbjct: 615 KPCFIYRLLSTGTIEEKIFQRQAHKKALSSTVVDNEEDVARH 656


>gi|121700154|ref|XP_001268342.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
 gi|119396484|gb|EAW06916.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
          Length = 682

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 428 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMT 487

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 488 VNKRQKLVDKFNDPNGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 546

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 547 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 594


>gi|282890006|ref|ZP_06298540.1| hypothetical protein pah_c009o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281500098|gb|EFB42383.1| hypothetical protein pah_c009o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1234

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 79/205 (38%), Gaps = 21/205 (10%)

Query: 6    KFQRELYCDLQGENIEA---FNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEV 61
            +  RE    +  +   A    +  +      Q+ N  A +    + +++    K    + 
Sbjct: 1010 ERSREKILQVLHDRTIAIPYMHIFALLSSLKQICNHPAAFLKTPEEYQDYSSGKWDLFKE 1069

Query: 62   IIEKANA--APIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            ++++A      ++V   +   L           ++ A  +G T+D+     +   +    
Sbjct: 1070 LLDEARESSQKVVVFSQYLGMLDIFELYLQQNGIEYATIRGSTVDRRAPIKRFNQDPNCE 1129

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G++L    ++++ +  WW+     Q  +R+      + G  R V V+ L
Sbjct: 1130 IFVGSLRAAGLGIDLT-AASVVIHYDRWWNAARENQATDRV-----HRMGQTRGVQVFKL 1183

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            +   TI+E + Q +  K  + + ++
Sbjct: 1184 VTLGTIEERIDQLISQKGQLLEDVV 1208


>gi|17231890|ref|NP_488438.1| hypothetical protein alr4398 [Nostoc sp. PCC 7120]
 gi|17133534|dbj|BAB76097.1| alr4398 [Nostoc sp. PCC 7120]
          Length = 1075

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 31/221 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y K       +++            +  +K  Q+ N    Y +    ++    K++ L
Sbjct: 831  ALYQKAVETSLAEIESAEGLQRRGMILALLIKLKQICNHPAQYLKINTLEQHSSGKLQRL 890

Query: 60   EVIIEK----------ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
            E ++E+          A A   ++   F      L+    +           G +  +  
Sbjct: 891  EEMLEEVLAESNTYGVAGAGRALIFTQFAEWGKLLKPHLEKQLGREIFFLYGGTSKKQRE 950

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +       P++     + G GLNL    N +  F  WW+     Q  +R+     
Sbjct: 951  EMIDRFQHDPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF---- 1005

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V V+  +   T++E +   + +K  + + ++ A
Sbjct: 1006 -RIGQTRNVQVHKFVCNGTLEEKIHDMIESKKQLAEQVVGA 1045


>gi|67924074|ref|ZP_00517522.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854073|gb|EAM49384.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 1045

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 24/211 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGA-VYYDEEKHWKEVHDEKIKAL 59
             Y    +++   L+            +  ++  Q+ N    +  +   +      K++ L
Sbjct: 814  LYEAVVKDVLEKLEDTEGIQRKGLILSTLLRLKQICNHPRQFLQDNSDFIPNRSHKLERL 873

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
              ++E+  A     ++   F      L+    Q           G    K    I ++ +
Sbjct: 874  GEMLEEVIAEGDSFLIFTQFTEIGEALKTYLKQTLYYNTYYIHGGTNRQKRQQMITQFQD 933

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P         + G G+ L    N +  F  WW+    +Q  +R       + G K+ 
Sbjct: 934  QDTPPSAFILSLKAGGVGITLTK-ANHVFHFDRWWNPAVEEQATDR-----AFRIGQKKN 987

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VFV+  +   TI+E +   +  K  +   ++
Sbjct: 988  VFVHKFVTLGTIEERIDVMIEDKKKMASAIV 1018


>gi|225593133|gb|ACN96051.1| SNF2-related helicase [Fischerella sp. MV11]
          Length = 828

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 24/213 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKAL 59
            Y K   E   +++            +  VK  Q+ N    Y ++    E H   K+  L
Sbjct: 592 LYQKVVEESLAEIETAEGMQRRGMILALLVKLKQVCNHPAQYLKKTTLSEPHLSGKLLRL 651

Query: 60  EVIIEK--ANAAPIIVAYHF-------NSDLARLQKA---FPQGRT-LDKDPCTIQEWNE 106
           + ++E+  +     ++   F          L +       F  G T   +    I  +  
Sbjct: 652 QEMLEEVLSEGDRALIFTQFAEWGKLLKPYLEQKLGREIFFLYGSTSKKQREEMIDRFQH 711

Query: 107 GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P++     + G GLNL    N +  F  WW+     Q  +R+      + G  R 
Sbjct: 712 DPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RIGQTRN 765

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  +   T++E +   + +K  + + ++ A
Sbjct: 766 VQVHKFVCTGTLEEKIHDMIESKKQLAEQVVGA 798


>gi|300781455|ref|ZP_07091309.1| chromodomain helicase [Corynebacterium genitalium ATCC 33030]
 gi|300533162|gb|EFK54223.1| chromodomain helicase [Corynebacterium genitalium ATCC 33030]
          Length = 1006

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y      +  +L+     A      +   +  Q+ N   +Y  +             K
Sbjct: 772 ALYTALVNAMQKELESRTGMARKGLVLSTITRIKQICNHPAHYQADGSPVTDKGKHRSGK 831

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  L  ++++A      ++V   + +    LQ                G +  +    ++
Sbjct: 832 VAMLMELLDQAIETDQRVLVFTQYKAFGDILQPYLSDRLGHEIPFLHGGLSKTQRDTMVE 891

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +   P  +     + G GLNL    ++++    WW+     Q  +R       + G 
Sbjct: 892 RFQDPNGPRAMILSLRAGGTGLNLT-AASMVIHMDRWWNPAVENQATDR-----AYRIGQ 945

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V VY +I + T++E +   L  K  +   ++
Sbjct: 946 NRNVQVYKMITRGTMEESIQDILDGKLKLAGAVV 979


>gi|241640781|ref|XP_002410926.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503624|gb|EEC13118.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 654

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQEWN 105
           +  L  II       +++  ++   L    RL +             T+ K    +  +N
Sbjct: 411 LDCLLAIIRSTTDDKVVLISNYTQTLDVFERLCRERGYGFFRLDGSMTIKKRAKIVAAFN 470

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               P         + G GLNL  G N LV F   W+     Q + RI      + G K+
Sbjct: 471 VPSSPEFAFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDAQAMARIW-----RDGQKK 524

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +VY L++  +I+E +LQR   K  +   ++++
Sbjct: 525 PCYVYRLVSSGSIEEKILQRQTHKKALSSCVVDS 558


>gi|310790413|gb|EFQ25946.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1874

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ ++ +  A    +++ +     +  +++             G T   D+
Sbjct: 1592 VTDSGKLATLDKLLTRLKAEGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1651

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1652 RDTVADFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1705

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1706 HRLGQTRQVTVYRLITKGTIEERIRKRAMQKEEVQRVVIQG 1746


>gi|308160724|gb|EFO63198.1| Transcriptional activator, putative [Giardia lamblia P15]
          Length = 1860

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+ AL+ ++        P+++       L  L+               G  ++K   
Sbjct: 1665 DSGKLTALDKLLHTLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRGQ 1724

Query: 100  TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  +  I +      +   GLNL    + ++F+   W+  +  Q ++R+      +
Sbjct: 1725 IVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQDAQAMDRV-----HR 1778

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1779 LGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1821


>gi|253581922|ref|ZP_04859146.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
 gi|251836271|gb|EES64808.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
          Length = 926

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 30/213 (14%)

Query: 2   KQYHKFQRELYCDLQGENI-------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y + +R  Y  +    I         F       +  Q+ +       E     V   
Sbjct: 706 KLYEE-RRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITSC-----PEAKSNGVTSS 759

Query: 55  KIKAL-EVIIEK-ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE 103
           K + L   I+E   N   ++V  ++ + +  + +             G T D+     + 
Sbjct: 760 KREVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRF 819

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + K  +      + G GLNL    + +  +  WW+     Q I+R       + G  R
Sbjct: 820 QKDNKYKVFIMTLKTGGVGLNLT-AADTIFIYDPWWNKTVENQAIDR-----AYRLGQDR 873

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 874 TVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 906


>gi|300708513|ref|XP_002996434.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
 gi|239605736|gb|EEQ82763.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
          Length = 858

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           +   K+  L+ ++ K       +++ +     +  ++                  +    
Sbjct: 698 IDSGKLACLDKLLTKLKQENHRVLIYFQMTKMMDLVEDYCVKKEFTYCRLDGSSKVSYRR 757

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            T+ +W  G   +      + G G+NL    + ++F+   W+    QQ ++R       +
Sbjct: 758 DTVNDWQTGDKFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTVDQQAMDR-----AYR 811

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V VY LI +NTI+E V+++   K  +Q +++  
Sbjct: 812 IGQTKDVTVYRLITKNTIEERVIEKATHKGNLQKMVIKG 850


>gi|284053180|ref|ZP_06383390.1| SNF2-related helicase [Arthrospira platensis str. Paraca]
          Length = 1068

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 74/219 (33%), Gaps = 30/219 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKE-------VHD 53
             Y K   E   +++               VK  Q+ N  +    +   K+        + 
Sbjct: 825  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKEMPTLNPGYS 884

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHF-------NSDLARLQKAFP----QGRTLDKDPCT 100
             K++ L  ++E+  +     ++   F          L             G    +    
Sbjct: 885  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREVLFLYGGSRKLQREQM 944

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+     Q  +R+      +
Sbjct: 945  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----R 998

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+  +   T++E +   + +K  + + ++++
Sbjct: 999  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSS 1037


>gi|303281098|ref|XP_003059841.1| dexh-box helicase [Micromonas pusilla CCMP1545]
 gi|226458496|gb|EEH55793.1| dexh-box helicase [Micromonas pusilla CCMP1545]
          Length = 2006

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++AL  ++   K+     ++       L  L+              G 
Sbjct: 1365 PDRRLVQFDCGKLQALAQLLRTLKSGGHKALIFTQMTKMLDILEAFLNLYGYPYCRLDGS 1424

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + Q +N + ++ +      S G G+NL  G + ++F+   W+    QQ    
Sbjct: 1425 TRPEQRQILMQRYNTDPRLFVFILSTRSGGFGINLT-GADTVIFYDSDWNPAMDQQA--- 1480

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y ++ + TI+E +L++   K  +    + A
Sbjct: 1481 --QDRAHRIGQTRPVRIYRMVCKGTIEENILKKSMQKRELDHFAIQA 1525


>gi|317063195|ref|ZP_07927680.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313688871|gb|EFS25706.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 926

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 30/213 (14%)

Query: 2   KQYHKFQRELYCDLQGENI-------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y + +R  Y  +    I         F       +  Q+ +       E     V   
Sbjct: 706 KLYEE-RRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITSC-----PEAKSNGVTSS 759

Query: 55  KIKAL-EVIIEK-ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE 103
           K + L   I+E   N   ++V  ++ + +  + +             G T D+     + 
Sbjct: 760 KREVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRF 819

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + K  +      + G GLNL    + +  +  WW+     Q I+R       + G  R
Sbjct: 820 QKDNKYKVFIMTLKTGGVGLNLT-AADTIFIYDPWWNKTVENQAIDR-----AYRLGQDR 873

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 874 TVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 906


>gi|257468947|ref|ZP_05633041.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 915

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 30/213 (14%)

Query: 2   KQYHKFQRELYCDLQGENI-------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y + +R  Y  +    I         F       +  Q+ +       E     V   
Sbjct: 695 KLYEE-RRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITSC-----PEAKSNGVTSS 748

Query: 55  KIKAL-EVIIEK-ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE 103
           K + L   I+E   N   ++V  ++ + +  + +             G T D+     + 
Sbjct: 749 KREVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRF 808

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + K  +      + G GLNL    + +  +  WW+     Q I+R       + G  R
Sbjct: 809 QKDNKYKVFIMTLKTGGVGLNLT-AADTIFIYDPWWNKTVENQAIDR-----AYRLGQDR 862

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF Y LI ++TI+E +LQ   TKS + D L++
Sbjct: 863 TVFSYKLILKDTIEEKILQLQDTKSKLLDNLIS 895


>gi|227503822|ref|ZP_03933871.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227199646|gb|EEI79694.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1013

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEKHWKEVHDE---K 55
             Y     ++   L+     +          +  Q+ N  A Y  +             K
Sbjct: 781 ALYKALVDDVQKALETREGMSRRGLVLASLTRIKQICNHPAHYLGDGSSVTLKGKHRSGK 840

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           ++ L  I+++A  +   I+V   + +    LQ    Q           G T +K    ++
Sbjct: 841 VEELMRIVDQAIESEERILVFTQYKAFGDILQPYLTQQLGREIPFLHGGVTKNKRDQMVE 900

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++      P +     + G GLNL    +I+V    WW+     Q  +R       + G 
Sbjct: 901 DFQSPDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQ 954

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V VY +I   T++E +   L  K  +   ++
Sbjct: 955 QRNVQVYKMITAGTLEESIQDILDGKMHLAGAVV 988


>gi|294660081|ref|XP_002770708.1| DEHA2G22682p [Debaryomyces hansenii CBS767]
 gi|218512083|sp|Q6BGY8|INO80_DEBHA RecName: Full=Putative DNA helicase INO80
 gi|199434455|emb|CAR66027.1| DEHA2G22682p [Debaryomyces hansenii]
          Length = 1364

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++     N   +++ +     +  +++                 LD     
Sbjct: 1141 SGKLSKLDELLVDLRQNDHRVLIYFQMTKMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDL 1200

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  + +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1201 VHDWQTKPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1254

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1255 GQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEG 1292


>gi|159111807|ref|XP_001706134.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
 gi|157434227|gb|EDO78460.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
          Length = 1859

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+ AL+ ++        P+++       L  L+               G  ++K   
Sbjct: 1664 DSGKLTALDKLLHNLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRGQ 1723

Query: 100  TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  +  I +      +   GLNL    + ++F+   W+  +  Q ++R+      +
Sbjct: 1724 IVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQDAQAMDRV-----HR 1777

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1778 LGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1820


>gi|330930041|ref|XP_003302867.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
 gi|311321495|gb|EFQ89043.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
          Length = 812

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLD 95
           E K W       +  +   I       I++  ++   L         R    F    T++
Sbjct: 555 EVKTWYSGKMAVLDRMLARIRAETNDKIVLISNYTQTLDIFAMLCRSRGYGCFRLDGTMN 614

Query: 96  --KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    + ++N+ + P  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 615 VSKRQKLVDKFNDPESPEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 673

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  I   TI+E V QR   K ++   ++++ +    H
Sbjct: 674 W-----RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDSAEDVERH 721


>gi|189211141|ref|XP_001941901.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977994|gb|EDU44620.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 812

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLD 95
           E K W       +  +   I       I++  ++   L         R    F    T++
Sbjct: 555 EVKTWYSGKMAVLDRMLARIRAETNDKIVLISNYTQTLDIFAMLCRSRGYGCFRLDGTMN 614

Query: 96  --KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    + ++N+ + P  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 615 VSKRQKLVDKFNDPESPEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 673

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  I   TI+E V QR   K ++   ++++ +    H
Sbjct: 674 W-----RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDSAEDVERH 721


>gi|227501655|ref|ZP_03931704.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227077680|gb|EEI15643.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 1009

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVH-DEK 55
             Y     E+   L+     +          +  Q+ N   +Y   D     K  H   K
Sbjct: 777 ALYKALVNEVKKSLEDATGISKRGIVLASLTRIKQICNHPAHYLGDDSPVVIKGKHRSGK 836

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +K L  I++ A      +++   + +    LQ                G T +K    ++
Sbjct: 837 VKELMRIVDAATESGERLLIFTQYKAFGDILQPYLSGQLGHEIPFLHGGVTKNKRDQMVE 896

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++     P  +     + G GLNL    +I+V    WW+     Q  +R       + G 
Sbjct: 897 DFQADDGPQAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQ 950

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V VY +I   T++E +   L  K+ +   ++
Sbjct: 951 RRNVQVYKMITAGTLEESIQDILDGKTQLAGAVV 984


>gi|126654102|ref|ZP_01725924.1| helicase, putative [Bacillus sp. B14905]
 gi|126589410|gb|EAZ83559.1| helicase, putative [Bacillus sp. B14905]
          Length = 924

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 23/189 (12%)

Query: 26  ASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA-----NAAPIIVAYHFNS 79
                K  QL N  A+Y  E     E    +   LE I++ A     N    ++   +  
Sbjct: 721 LKMLSKLKQLCNHPALYLKEPFEDAETMLARSAKLERIVQMAAEIVDNGEQCLIFTQYIG 780

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               LQ    +                +    ++ +  G  P+      + G GLNL   
Sbjct: 781 MGQLLQHCLSELYNVDAPFLTGAMPKQQRDRLVEAFQAGDFPIFILSLKAGGTGLNLT-A 839

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++    WW+     Q  +R       + G  + V V+  +   TI+E + + L  KS
Sbjct: 840 ANHVLHADRWWNPAVENQATDR-----AYRIGQTQFVQVHKFVTLGTIEEKIDKMLAQKS 894

Query: 189 TIQDLLLNA 197
            + + L+ +
Sbjct: 895 ALSEELIQS 903


>gi|50286955|ref|XP_445907.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74691046|sp|Q6FV37|INO80_CANGA RecName: Full=Putative DNA helicase INO80
 gi|49525213|emb|CAG58826.1| unnamed protein product [Candida glabrata]
          Length = 1484

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 67/163 (41%), Gaps = 19/163 (11%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++ +   N   +++ +     +  +++                 L+     
Sbjct: 1294 SAKLKKLDELLVELKKNDHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1353

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1354 VHDWQTNPEIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1407

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V VY L+ + TI+E +  R + K  +Q +++    K+T
Sbjct: 1408 GQTKQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTKDT 1450


>gi|257456585|ref|ZP_05621780.1| Snf2 family protein [Treponema vincentii ATCC 35580]
 gi|257446005|gb|EEV21053.1| Snf2 family protein [Treponema vincentii ATCC 35580]
          Length = 1250

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 23/214 (10%)

Query: 1    MKQYHKF-QRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y    + +L   L+ E     N+          Q+ N    YDE          K  
Sbjct: 1025 IALYESLVETQLKNVLKTEEGIKRNALVLKLLTALKQVCNHPHVYDESFQTNVTLSGKTA 1084

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW 104
            AL  ++ +        ++   +   L  L+K   +              L      ++ +
Sbjct: 1085 ALMQLLGEILDAGEKTLIFSQYTQTLFLLRKLIQEQFGDEPLLLHGQMPLSARKAAVESF 1144

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +      + G GLNL      ++ F LW++     Q  +R       + G   
Sbjct: 1145 QTNPAQRIFLISLKAGGTGLNLT-AATRVIHFDLWYNPAIEDQATDR-----AFRIGQHN 1198

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VFV   I   T +E + + ++ K  I  + L+ 
Sbjct: 1199 TVFVSRFICAGTFEEKIDEMIQKKRHISQMTLSG 1232


>gi|296814920|ref|XP_002847797.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
 gi|238840822|gb|EEQ30484.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
          Length = 819

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
           +NG     E K W       +  +   I +     I++  ++   L    RL ++   G 
Sbjct: 557 SNGRRGDREVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRSRGYGC 616

Query: 93  TL-------DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    +  +N   G+  +      + G G+NL  G N LV F   W+   
Sbjct: 617 IRLDGTMGVKKRSKLVDRFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAA 675

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            QQ + R+      + G  +  FVY  IA  TI+E + QR   K ++   ++++ +    
Sbjct: 676 DQQALARVW-----RDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVER 730

Query: 204 H 204
           H
Sbjct: 731 H 731


>gi|260187090|ref|ZP_05764564.1| putative helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289447722|ref|ZP_06437466.1| helicase helZ [Mycobacterium tuberculosis CPHL_A]
 gi|289420680|gb|EFD17881.1| helicase helZ [Mycobacterium tuberculosis CPHL_A]
          Length = 1014

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 781 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 840

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 841 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 900

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 901 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 954

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 955 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 986


>gi|169826616|ref|YP_001696774.1| ATP-dependent helicase [Lysinibacillus sphaericus C3-41]
 gi|168991104|gb|ACA38644.1| Hypothetical ATP-dependent helicase [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 23/189 (12%)

Query: 26  ASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA-----NAAPIIVAYHFNS 79
                K  QL N  A+Y  E     +    +   LE I++ A     N    ++   +  
Sbjct: 720 LKMLSKLKQLCNHPALYLKEPFEDAQTMLARSAKLERIVQMAAEIVDNGEQCLIFTQYIG 779

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               LQ    +                +    ++ +  G  P+      + G GLNL   
Sbjct: 780 MGQLLQHCLSELYNVDAPFLTGAMPKQQRDRLVEAFQAGDFPIFILSLKAGGTGLNLT-A 838

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++    WW+     Q  +R       + G  + V V+  +   TI+E + + L  KS
Sbjct: 839 ANHVLHADRWWNPAVENQATDR-----AYRIGQTQFVQVHKFVTLGTIEEKIDKMLAQKS 893

Query: 189 TIQDLLLNA 197
            + + L+ +
Sbjct: 894 ALSEELIQS 902


>gi|260802348|ref|XP_002596054.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
 gi|229281308|gb|EEN52066.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
          Length = 791

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 44  EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRT-----L 94
           +       +  K++ L  ++     +     I+V  ++   L  +Q  +   R       
Sbjct: 517 DPNSSSPEYSGKLQVLADLLGSLYSEGPRERIVVVSNYTQTLDMVQVRYGYLRLDGSTPT 576

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K    ++ +N+      +      + G GLNL  G + LV + + W+     Q + R+ 
Sbjct: 577 GKRQQIVERFNDKYCRDFVFLLSTKAGGVGLNL-IGASRLVLYDIDWNPANDLQAMARVW 635

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G  R V +Y LI   TI+E + QR  +K  +   +++A     + 
Sbjct: 636 -----RDGQPRVVHIYRLITTGTIEEKIYQRQISKQGLSGAVVDAKSSSKVQ 682


>gi|322491113|emb|CBZ26378.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1284

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
            K++ LE  ++K   +   +++   F   L  L++             G T  +     + 
Sbjct: 870  KLQFLETALKKMRNDGHRMLIFTQFVHMLNILERFLALIGVVYTRLDGSTKAELRQQYVD 929

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 930  RFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 983

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R V +Y LI+++T++E +L++ R +  + ++++   +  TI
Sbjct: 984  TRPVTIYRLISEHTVEESILEKARERKKLNNVVIRGGQFHTI 1025


>gi|317031306|ref|XP_001393160.2| DNA repair protein rhp54 [Aspergillus niger CBS 513.88]
          Length = 813

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 559 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRTRGYGSLRLDGTMT 618

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 619 VGKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 677

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 678 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 725


>gi|134077689|emb|CAK45729.1| unnamed protein product [Aspergillus niger]
          Length = 846

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 592 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRTRGYGSLRLDGTMT 651

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 652 VGKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 710

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 711 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 758


>gi|296138942|ref|YP_003646185.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
 gi|296027076|gb|ADG77846.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
          Length = 958

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANG-AVYYDEEK---HWKEVHDEKI 56
            Y      L  +L+                +  Q+ N  A Y D+        +    K+
Sbjct: 724 LYQAVLNRLVEELRRSEGMPRRGLVLASLTRLKQVCNHPAQYLDDGSPLLRRGQHRSGKV 783

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQ 102
           + L  I+E   A+    +V   + ++ AR+ + +  G                     ++
Sbjct: 784 ELLADILETVAADGERALVFTQY-AEFARMLQPWLSGLLGAEVPVLDGSVPRRDRDAMVE 842

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  G   P+L A   S G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 843 RFQAGDGAPVLLATVKSGGTGLNLT-AANHVVHVDRWWNPAVENQATDR-----AFRIGQ 896

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +AV V   +   T++E +   +  K  + D+ + 
Sbjct: 897 TKAVQVRKFVCAGTLEERIDGVIAAKRELSDMTVQ 931


>gi|150865205|ref|XP_001384327.2| SNF2 family DNA-dependent ATPase [Scheffersomyces stipitis CBS
           6054]
 gi|149386461|gb|ABN66298.2| SNF2 family DNA-dependent ATPase [Scheffersomyces stipitis CBS
           6054]
          Length = 715

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 70/182 (38%), Gaps = 16/182 (8%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
           + SKT   +QL    V  D          + ++ L  I +      IIV   F S    +
Sbjct: 515 AISKTPTNMQLVQQLVKRDNGLTPSAKISKCVELLREIFKSYPGEKIIVFSQFTSLFDIM 574

Query: 85  QKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +    +            T+D    TI+ + +  + +L     +   GL L    ++++ 
Sbjct: 575 KLVLDKEEIDFLRYDGSMTIDHKNSTIKRFYQEDVKVLLLSLKAGNVGLTLTCASHVII- 633

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +W+    +Q ++R       + G +R VFV+ ++   T++  +++    K  +    
Sbjct: 634 IDPFWNPYVEEQAMDR-----AHRIGQEREVFVHRILIAGTVESRIMELQDRKREMVGAA 688

Query: 195 LN 196
           L+
Sbjct: 689 LD 690


>gi|121607802|ref|YP_995609.1| SNF2-like protein [Verminephrobacter eiseniae EF01-2]
 gi|121552442|gb|ABM56591.1| SNF2-related protein [Verminephrobacter eiseniae EF01-2]
          Length = 917

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLAR 83
            +  ++  Q+ N    +  +  +      K   L  + E        ++V   F    A 
Sbjct: 706 LAFLMRFKQICNHPSQWLGDGAYGPSDSGKFARLRELAEAVAGRQEKVLVFTQFQEMTAP 765

Query: 84  LQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
           L +               G  + +    +  +   +  P       + G GLNL    + 
Sbjct: 766 LVQFLQSVFARPGLVLHGGTAVKERAALVDAFQREQGPPFFVLSLKAGGTGLNLT-AASH 824

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V F  WW+     Q  +R       + G K+ V V+  + + T++E +   +  K  + 
Sbjct: 825 VVHFDRWWNPAVENQATDR-----AYRIGQKKNVLVHKFVCRGTVEERIDALVEAKLGLS 879

Query: 192 DLLLNA 197
           + ++  
Sbjct: 880 NQIIEG 885


>gi|261416687|ref|YP_003250370.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
 gi|261373143|gb|ACX75888.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
          Length = 1284

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 20/168 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------Q 90
              +   ++   K++ L  ++          ++   F      L+                
Sbjct: 1099 APQKSNKLESGKMQMLLDLLTSIQEQGEKTLIFTQFAEMGHLLKSTIESELGLRTHFYHG 1158

Query: 91   GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G T  +    IQ++ E     +L     + G GLNL    + ++ + LWW+     Q  +
Sbjct: 1159 GCTQTQRSEMIQDFQENPDCKVLILSLKAGGTGLNL-VAASQVIHYDLWWNPAIEAQATD 1217

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R       + G KR V V+  I + T +E +   L TK  I +L +NA
Sbjct: 1218 R-----AFRIGQKRNVQVHRFITKGTFEEKINALLETKKAIANLTVNA 1260


>gi|213405783|ref|XP_002173663.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001710|gb|EEB07370.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
          Length = 853

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           ++H       K+  LE +   I+K     I++  ++ S L   ++               
Sbjct: 609 DRHVDSSLSGKMLVLERMLYRIKKETDDKIVLISNYTSTLDLFEQVCRTRGYKALRLDGT 668

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             + K    + E+N+ +    +      + G G+NL  G N L+ F   W+    QQ + 
Sbjct: 669 MNVSKRQRLVDEFNDPEKDAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALA 727

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   +++  +    H
Sbjct: 728 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERH 777


>gi|15609238|ref|NP_216617.1| helicase HelZ [Mycobacterium tuberculosis H37Rv]
 gi|2909552|emb|CAA17284.1| PROBABLE HELICASE HELZ [Mycobacterium tuberculosis H37Rv]
          Length = 1013

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|148661915|ref|YP_001283438.1| putative helicase HelZ [Mycobacterium tuberculosis H37Ra]
 gi|306776343|ref|ZP_07414680.1| helicase helZ [Mycobacterium tuberculosis SUMu001]
 gi|306972457|ref|ZP_07485118.1| helicase helZ [Mycobacterium tuberculosis SUMu010]
 gi|307080168|ref|ZP_07489338.1| helicase helZ [Mycobacterium tuberculosis SUMu011]
 gi|307084748|ref|ZP_07493861.1| helicase helZ [Mycobacterium tuberculosis SUMu012]
 gi|148506067|gb|ABQ73876.1| putative helicase HelZ [Mycobacterium tuberculosis H37Ra]
 gi|308215227|gb|EFO74626.1| helicase helZ [Mycobacterium tuberculosis SUMu001]
 gi|308358097|gb|EFP46948.1| helicase helZ [Mycobacterium tuberculosis SUMu010]
 gi|308362031|gb|EFP50882.1| helicase helZ [Mycobacterium tuberculosis SUMu011]
 gi|308365678|gb|EFP54529.1| helicase helZ [Mycobacterium tuberculosis SUMu012]
          Length = 1013

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|237739928|ref|ZP_04570409.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
 gi|229421945|gb|EEO36992.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
          Length = 896

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
             V   E  + K +  +K   +E +IE   N   +++  ++ S +  +  +  +      
Sbjct: 714 HIVSSPELDNNKIISSKKEVLIENVIEAIENDHKVLIFVNYLSSIESICNSLKENKIKFL 773

Query: 91  ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G+T D+     +  ++ +  +      + G GLNL    + +  +  WW+     Q 
Sbjct: 774 KMTGQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNKTVENQA 832

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I+R       + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 833 IDR-----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|114332146|ref|YP_748368.1| SNF2-related protein [Nitrosomonas eutropha C91]
 gi|114309160|gb|ABI60403.1| SNF2-related protein [Nitrosomonas eutropha C91]
          Length = 897

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 24/188 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
            S  ++  Q+ N    +  +  WK     K   L  I E   A    ++V   F    A 
Sbjct: 691 LSFLMRFKQICNHPSQWLNDGGWKPEESGKFARLHEIAETVAARQEKLLVFTQFQETTAP 750

Query: 84  LQKAFPQGRTLDKDPCTIQ--------------EWNEGKIPLLFAHPASCGHGLNLQYGG 129
           L      G    ++   +                  +  +P       + G GLNL    
Sbjct: 751 LAAFL--GSVFGREGLVLHGGTPVVRRRELVRRFQEDESVPFFVLSIKAGGSGLNLT-AA 807

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + +V F  WW+     Q  +R       + G  + V V+  I + TI+E + + +  K  
Sbjct: 808 SHVVHFDRWWNPAVENQATDR-----AYRIGQHKNVLVHKFICRGTIEERIDELIHAKQQ 862

Query: 190 IQDLLLNA 197
           +   ++  
Sbjct: 863 LVQDVVEG 870


>gi|291569923|dbj|BAI92195.1| SNF2 helicase homolog [Arthrospira platensis NIES-39]
          Length = 1068

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 74/219 (33%), Gaps = 30/219 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKE-------VHD 53
             Y K   E   +++               VK  Q+ N  +    +   K+        + 
Sbjct: 825  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKEMPTLNSAYS 884

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHF-------NSDLARLQKAFP----QGRTLDKDPCT 100
             K++ L  ++E+  +     ++   F          L             G    +    
Sbjct: 885  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREVLFLYGGSRKLQREQM 944

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+     Q  +R+      +
Sbjct: 945  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----R 998

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+  +   T++E +   + +K  + + ++++
Sbjct: 999  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSS 1037


>gi|227548395|ref|ZP_03978444.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079533|gb|EEI17496.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1039

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEK 55
              Y    R+   +L+     A          +  Q+ N   ++  +     +       K
Sbjct: 806  ALYTALVRDAQAELEEREGMARKGMVLATITRIKQICNHPAHFLGDGSAVTLKGKHRSGK 865

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
            +  L  ++ +A  +   +++   + +  A LQ    +           G + D     + 
Sbjct: 866  VAMLMELLGEAINSEQRVLIFTQYKAFGALLQPYLSERLGEPVPFLHGGVSKDARDAMVD 925

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +   G    +     + G GLNL    ++++    WW+     Q  +R       + G 
Sbjct: 926  SFQSVGGPRAMLLSLKAGGTGLNLT-AASVVIHLDRWWNPAVENQATDR-----AYRIGQ 979

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + V VY +I + T++E +   L  K  +   ++
Sbjct: 980  DKNVTVYKMITRGTLEESIQDVLDGKMHLAGTVV 1013


>gi|452690|emb|CAA82750.1| DNA repair protein [Schizosaccharomyces pombe]
          Length = 852

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +++       K+  LE +   I++     I++  ++ S L   ++               
Sbjct: 601 DRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGT 660

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +N+ +    +      + G G+NL  G N L+ F   W+    QQ + 
Sbjct: 661 MNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALA 719

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   +++  +    H
Sbjct: 720 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERH 769


>gi|19115202|ref|NP_594290.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe 972h-]
 gi|3123262|sp|P41410|RAD54_SCHPO RecName: Full=DNA repair protein rhp54; AltName: Full=RAD54 homolog
           1
 gi|2239180|emb|CAB10100.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe]
          Length = 852

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +++       K+  LE +   I++     I++  ++ S L   ++               
Sbjct: 601 DRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGT 660

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +N+ +    +      + G G+NL  G N L+ F   W+    QQ + 
Sbjct: 661 MNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALA 719

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   +++  +    H
Sbjct: 720 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERH 769


>gi|294782979|ref|ZP_06748305.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481620|gb|EFG29395.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 896

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
             V   E  + K +  +K   +E +IE   N   +++  ++ S +  +  +  +      
Sbjct: 714 HIVSSPELDNNKIISSKKEVLIENVIEAIENDHKVLIFVNYLSSIESICNSLKENKIKFL 773

Query: 91  ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G+T D+     +  ++ +  +      + G GLNL    + +  +  WW+     Q 
Sbjct: 774 KMTGQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNKTVENQA 832

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I+R       + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 833 IDR-----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|256072791|ref|XP_002572717.1| helicase [Schistosoma mansoni]
 gi|238657881|emb|CAZ28949.1| helicase, putative [Schistosoma mansoni]
          Length = 1753

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 19/182 (10%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            K  QL         +    +    K++ L  ++ +  +    +++       L  L++  
Sbjct: 1323 KLHQLVMSCRIQFPDPRLIQYDCGKLQRLHSLLRELKSGNHRVLIFTQMARMLDILEQFL 1382

Query: 89   ---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       G T  +    + + +N + +I +      S G G+NL  G + ++F+  
Sbjct: 1383 AYHGHRYLRLDGTTKVEQRQVLMERFNQDSQIFVFILSTRSGGLGINLT-GADTVIFYDS 1441

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q  +R       + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1442 DWNPTMDAQAQDRC-----HRIGQTRDVHIYRLISERTVEENILRKANQKRFLSDVAIEG 1496

Query: 198  LK 199
             K
Sbjct: 1497 GK 1498


>gi|256072789|ref|XP_002572716.1| helicase [Schistosoma mansoni]
 gi|238657880|emb|CAZ28948.1| helicase, putative [Schistosoma mansoni]
          Length = 2395

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 19/182 (10%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            K  QL         +    +    K++ L  ++ +  +    +++       L  L++  
Sbjct: 1323 KLHQLVMSCRIQFPDPRLIQYDCGKLQRLHSLLRELKSGNHRVLIFTQMARMLDILEQFL 1382

Query: 89   ---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       G T  +    + + +N + +I +      S G G+NL  G + ++F+  
Sbjct: 1383 AYHGHRYLRLDGTTKVEQRQVLMERFNQDSQIFVFILSTRSGGLGINLT-GADTVIFYDS 1441

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q  +R       + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1442 DWNPTMDAQAQDRC-----HRIGQTRDVHIYRLISERTVEENILRKANQKRFLSDVAIEG 1496

Query: 198  LK 199
             K
Sbjct: 1497 GK 1498


>gi|196008607|ref|XP_002114169.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
 gi|190583188|gb|EDV23259.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
          Length = 687

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
           H  K+  L  +++     +    ++V  +F   L  LQK                   K 
Sbjct: 490 HSGKLAVLSNLLDWIYQNSPKEKVVVVSNFTRTLDVLQKMCKSKNYRYVRLDGSTPTSKR 549

Query: 98  PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +N    K  +      + G GLNL  G + LV + + W+     Q + RI    
Sbjct: 550 HTIVENFNSSYSKTFVFLLSSKAGGTGLNL-IGASRLVLYDIDWNPANDLQAMARIW--- 605

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G KR V++Y L+   TI+E + QR   K  +   +++
Sbjct: 606 --RDGQKRDVYIYRLVTTGTIEEKIFQRQVMKHDLSGAVMD 644


>gi|289554116|ref|ZP_06443326.1| LOW QUALITY PROTEIN: helicase helZ [Mycobacterium tuberculosis KZN
           605]
 gi|289438748|gb|EFD21241.1| LOW QUALITY PROTEIN: helicase helZ [Mycobacterium tuberculosis KZN
           605]
          Length = 911

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 678 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 737

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 738 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 797

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 798 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 852 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 883


>gi|146104782|ref|XP_001469910.1| helicase [Leishmania infantum]
 gi|134074280|emb|CAM73025.1| putative helicase [Leishmania infantum JPCM5]
          Length = 1285

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
            K++ LE  ++K   +   +++   F   L  L++             G T  +     + 
Sbjct: 870  KLQFLETALKKMRDDGHRMLIFTQFVHMLNILERFLALIGIVYTRLDGSTKAELRQQYVD 929

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 930  RFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTIDLQAQDRC-----HRIGQ 983

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R V +Y LI+++T++E +L++ R +  + ++++   +  TI
Sbjct: 984  TRPVTIYRLISEHTVEESILEKARERKKLNNVVIRGGQFHTI 1025


>gi|31793283|ref|NP_855776.1| helicase HelZ [Mycobacterium bovis AF2122/97]
 gi|121637985|ref|YP_978209.1| putative helicase helZ [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990479|ref|YP_002645166.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618875|emb|CAD96980.1| PROBABLE HELICASE HELZ [Mycobacterium bovis AF2122/97]
 gi|121493633|emb|CAL72108.1| Probable helicase helZ [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224773592|dbj|BAH26398.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 1013

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|215431026|ref|ZP_03428945.1| helicase helZ [Mycobacterium tuberculosis EAS054]
 gi|289754211|ref|ZP_06513589.1| helicase helZ [Mycobacterium tuberculosis EAS054]
 gi|289694798|gb|EFD62227.1| helicase helZ [Mycobacterium tuberculosis EAS054]
          Length = 1013

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|56964329|ref|YP_176060.1| DNA/RNA helicase [Bacillus clausii KSM-K16]
 gi|56910572|dbj|BAD65099.1| SNF2 family DNA/RNA helicase [Bacillus clausii KSM-K16]
          Length = 997

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 20/182 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +  Q+ N    + ++         K  A   I+    +    +++   +      +  
Sbjct: 795 ITRMKQICNHPAQFYKDGDIAGHQSGKWDAFLDIVASIFSKGESVLIFTQYKEMGKLISH 854

Query: 87  AFP-----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                          G +  +    I+++  +           + G GLNL    N ++ 
Sbjct: 855 ELQARYEVPVPFLHGGLSRSQRRMAIEQFQHDPHAAAFVLSLKAGGVGLNLTKATN-VIH 913

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  WW+     Q  +R       + G  + V VY L+   T++E + Q +  K  + + +
Sbjct: 914 YDRWWNPAVENQATDR-----AYRIGQTKPVQVYKLLTAGTVEERIDQLINGKKALAEGV 968

Query: 195 LN 196
           L 
Sbjct: 969 LQ 970


>gi|146324514|ref|XP_751168.2| dsDNA-dependent ATPase Rad54 [Aspergillus fumigatus Af293]
 gi|129557284|gb|EAL89130.2| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           Af293]
          Length = 807

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 553 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 612

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 613 INKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 671

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 672 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 719


>gi|119472846|ref|XP_001258430.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
 gi|119406582|gb|EAW16533.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
          Length = 835

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 581 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 640

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 641 INKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 699

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 700 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 747


>gi|148823314|ref|YP_001288068.1| helicase helZ [Mycobacterium tuberculosis F11]
 gi|215403485|ref|ZP_03415666.1| putative helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|215411805|ref|ZP_03420597.1| putative helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|254232263|ref|ZP_04925590.1| helicase helZ [Mycobacterium tuberculosis C]
 gi|254551134|ref|ZP_05141581.1| putative helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260205390|ref|ZP_05772881.1| putative helicase [Mycobacterium tuberculosis K85]
 gi|289574781|ref|ZP_06455008.1| helicase helZ [Mycobacterium tuberculosis K85]
 gi|289745376|ref|ZP_06504754.1| helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|294997044|ref|ZP_06802735.1| putative helicase [Mycobacterium tuberculosis 210]
 gi|298525599|ref|ZP_07013008.1| helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|306784872|ref|ZP_07423194.1| helicase helZ [Mycobacterium tuberculosis SUMu003]
 gi|306797957|ref|ZP_07436259.1| helicase helZ [Mycobacterium tuberculosis SUMu006]
 gi|306803836|ref|ZP_07440504.1| helicase helZ [Mycobacterium tuberculosis SUMu008]
 gi|306808409|ref|ZP_07445077.1| helicase helZ [Mycobacterium tuberculosis SUMu007]
 gi|306968232|ref|ZP_07480893.1| helicase helZ [Mycobacterium tuberculosis SUMu009]
 gi|124601322|gb|EAY60332.1| helicase helZ [Mycobacterium tuberculosis C]
 gi|148721841|gb|ABR06466.1| helicase helZ [Mycobacterium tuberculosis F11]
 gi|289539212|gb|EFD43790.1| helicase helZ [Mycobacterium tuberculosis K85]
 gi|289685904|gb|EFD53392.1| helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|298495393|gb|EFI30687.1| helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|308330390|gb|EFP19241.1| helicase helZ [Mycobacterium tuberculosis SUMu003]
 gi|308341711|gb|EFP30562.1| helicase helZ [Mycobacterium tuberculosis SUMu006]
 gi|308345201|gb|EFP34052.1| helicase helZ [Mycobacterium tuberculosis SUMu007]
 gi|308349504|gb|EFP38355.1| helicase helZ [Mycobacterium tuberculosis SUMu008]
 gi|308354134|gb|EFP42985.1| helicase helZ [Mycobacterium tuberculosis SUMu009]
 gi|323719315|gb|EGB28456.1| helicase helZ [Mycobacterium tuberculosis CDC1551A]
 gi|326903713|gb|EGE50646.1| helicase helZ [Mycobacterium tuberculosis W-148]
          Length = 1013

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|119489573|ref|ZP_01622333.1| SNF2-related helicase [Lyngbya sp. PCC 8106]
 gi|119454485|gb|EAW35633.1| SNF2-related helicase [Lyngbya sp. PCC 8106]
          Length = 1061

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 34/221 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYD-----------EEKHWK 49
             Y K   +   D+             +  VK  Q+ N  +  +           E +   
Sbjct: 816  LYQKIVDQSLADIDSAAGIQRRGMILALLVKLKQVCNHPILLNGKATKTGKKKVETQGLS 875

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHF-------NSDLARLQKA---FPQGRT-LDK 96
                 K++  + ++E+  +     IV   F          L +       F  G T  +K
Sbjct: 876  LQSSGKLQRFKEMLEELLSEGDRAIVFTQFAEWGKVLQPYLEQQLNREVLFLYGATRKNK 935

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + +     P+      + G GLNL    N +  F  WW+     Q  +R+   
Sbjct: 936  REEMIDRFQQDPQGPPIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-- 992

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G  R V V+  +   T++E +   + +K  + + ++
Sbjct: 993  ---RIGQTRNVQVHKFVCTGTLEEKIHDLIESKKVLAEQVV 1030


>gi|306780129|ref|ZP_07418466.1| helicase helZ [Mycobacterium tuberculosis SUMu002]
 gi|306789239|ref|ZP_07427561.1| helicase helZ [Mycobacterium tuberculosis SUMu004]
 gi|306793568|ref|ZP_07431870.1| helicase helZ [Mycobacterium tuberculosis SUMu005]
 gi|308326957|gb|EFP15808.1| helicase helZ [Mycobacterium tuberculosis SUMu002]
 gi|308334225|gb|EFP23076.1| helicase helZ [Mycobacterium tuberculosis SUMu004]
 gi|308338024|gb|EFP26875.1| helicase helZ [Mycobacterium tuberculosis SUMu005]
          Length = 1013

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|148262677|ref|YP_001229383.1| non-specific serine/threonine protein kinase [Geobacter
           uraniireducens Rf4]
 gi|146396177|gb|ABQ24810.1| Non-specific serine/threonine protein kinase [Geobacter
           uraniireducens Rf4]
          Length = 898

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y +  +EL   L+ +           S  ++  Q+ N       +  + E    K   
Sbjct: 666 RLYGQSVKELAEALREQQEGMKRRGLILSSLMRFKQICNHPGQALGDGDYAEERSGKFVR 725

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  + E+  +    +++   F    A +                 G  + +    +  + 
Sbjct: 726 LRELAEEIASRQEKVLIFTQFREMTAPIATFLATLFGRPGLVLHGGTPVAERKKLVDRFQ 785

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P       + G GLNL    + ++ F  WW+     Q  +R       + G K+ 
Sbjct: 786 HEDGPPFFVLSLKAGGSGLNLT-AASHVIHFDRWWNPAVENQATDR-----AFRIGQKKN 839

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  + + T++E +   +  KS +   LL+ 
Sbjct: 840 VMVHKFVCKGTVEEKIDALIAAKSGMATELLDG 872


>gi|198473012|ref|XP_001356143.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
 gi|292630937|sp|Q29KH2|RAD54_DROPS RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|198139260|gb|EAL33203.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
          Length = 782

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQGR--- 92
            + Y+ +         K K L+ +   I       +++  ++   L   ++   + +   
Sbjct: 482 PINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGF 541

Query: 93  -------TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    +  +N+      L      + G GLNL  G N L  F   W+   
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPAN 600

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q + R+      + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 601 DEQAMARVW-----RDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|156039515|ref|XP_001586865.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980]
 gi|154697631|gb|EDN97369.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 861

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFN---SDLARLQKAFPQGRTL---- 94
           ++  K  +  K++ L+ +   I +     I++  ++        +L +    G       
Sbjct: 609 DRDIKPWYSGKMQVLDRMLARIRQDTNDKIVLISNYTQTLDMFDKLCRNRGYGSLRLDGT 668

Query: 95  ---DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               K    + ++N+  G+  +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 669 MNVTKRQKLVDKFNDPDGQEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 727

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 728 RVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 777


>gi|90961729|ref|YP_535645.1| Phage helicase [Lactobacillus phage Sal1]
 gi|90820923|gb|ABD99562.1| Phage helicase [Lactobacillus phage Sal1]
 gi|300214512|gb|ADJ78928.1| Phage helicase [Lactobacillus salivarius CECT 5713]
          Length = 407

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y KF ++ Y +   + +    + +  +   QL+                 EK+  L  +I
Sbjct: 226 YRKFLKDKYLEFDNQELLGDTALTYLLGLRQLSG------------MYSKEKLDRLSDLI 273

Query: 64  EKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +      +I+ Y+F  +L  +    +        ++     +  +      +      + 
Sbjct: 274 DSTEDR-LIIFYNFERELDEIVKIAKNKIRPISIVNGKTKNLTNYETKDNSITLIQYQAG 332

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             GLNLQ   N +V+F+     E ++Q  +RI      + G +R+ F Y LI + +++E 
Sbjct: 333 SMGLNLQK-ANKIVYFTPPQQSELYEQSKKRI-----HRIGQERSCFYYNLIVEKSVEER 386

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + + L+ +    D L  +
Sbjct: 387 IYRALKERRDYTDELFKS 404


>gi|311740659|ref|ZP_07714486.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304179|gb|EFQ80255.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1011

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 30/216 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANG-AVYYDEEKHWKEVHDE-- 54
             Y     ++  DLQ       N      +   +  Q+ N  A Y  +            
Sbjct: 779 ALYKALVNQVKKDLQ--EATGINKRGLVLASLTRIKQICNHPAHYLGDNSPVTLKGKHRS 836

Query: 55  -KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            K+K L  I+++A      ++V   + +    LQ                G + +K    
Sbjct: 837 GKVKELMRIVDEATESGERLLVFTQYKAFGDILQPYLSDQLGREIPFLHGGVSKNKRDQM 896

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++      P +     + G GLNL    +I+V    WW+     Q  +R       + 
Sbjct: 897 VEDFQSEDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRI 950

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G +R V VY +I   T++E +   L  K+ +   ++
Sbjct: 951 GQRRNVQVYKMITAGTLEESIQDILDGKTQLAGAVV 986


>gi|255324485|ref|ZP_05365602.1| DNA/RNA helicase, SNF2 family [Corynebacterium tuberculostearicum
           SK141]
 gi|255298391|gb|EET77691.1| DNA/RNA helicase, SNF2 family [Corynebacterium tuberculostearicum
           SK141]
          Length = 1011

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 30/216 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANG-AVYYDEEKHWKEVHDE-- 54
             Y     ++  DLQ       N      +   +  Q+ N  A Y  +            
Sbjct: 779 ALYKALVNQVKKDLQ--EATGINKRGLVLASLTRIKQICNHPAHYLGDNSPVTLKGKHRS 836

Query: 55  -KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            K+K L  I+++A      ++V   + +    LQ                G + +K    
Sbjct: 837 GKVKELMRIVDEATESGERLLVFTQYKAFGDILQPYLSDQLGRDIPFLHGGVSKNKRDQM 896

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++      P +     + G GLNL    +I+V    WW+     Q  +R       + 
Sbjct: 897 VEDFQSEDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRI 950

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G +R V VY +I   T++E +   L  K+ +   ++
Sbjct: 951 GQRRNVQVYKMITAGTLEESIQDILDGKTQLAGAVV 986


>gi|226293396|gb|EEH48816.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb18]
          Length = 863

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL ++   G           K    + ++N  
Sbjct: 624 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDP 682

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 683 EGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 736

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 737 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 775


>gi|295664715|ref|XP_002792909.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226278430|gb|EEH33996.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 682

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL ++   G           K    + ++N  
Sbjct: 443 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDP 501

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 502 EGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 555

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 556 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 594


>gi|225684006|gb|EEH22290.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb03]
          Length = 821

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL ++   G           K    + ++N  
Sbjct: 582 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDP 640

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 641 EGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 694

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 695 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 733


>gi|306835829|ref|ZP_07468826.1| SNF2/RAD54 family protein [Corynebacterium accolens ATCC 49726]
 gi|304568303|gb|EFM43871.1| SNF2/RAD54 family protein [Corynebacterium accolens ATCC 49726]
          Length = 1009

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVH-DEK 55
             Y     E+   L+     +          +  Q+ N   +Y   D     K  H   K
Sbjct: 777 ALYKALVNEVKKSLEDATGISKRGIVLASLTRIKQICNHPAHYLGDDSPVVIKGKHRSGK 836

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +K L  I++ A      +++   + +    LQ                G T +K    ++
Sbjct: 837 VKELMRIVDAATESGERLLIFTQYKAFGDILQPYLSGQLGHEIPFLHGGVTKNKRDQMVE 896

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++     P  +     + G GLNL    +I+V    WW+     Q  +R       + G 
Sbjct: 897 DFQSEDGPQAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQ 950

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V VY +I   T++E +   L  K+ +   ++
Sbjct: 951 RRNVQVYKMITAGTLEESIQDILDGKTQLAGAVV 984


>gi|253745191|gb|EET01274.1| Transcriptional activator, putative [Giardia intestinalis ATCC 50581]
          Length = 1837

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+ AL+ ++        P+++       L  L+               G  ++K   
Sbjct: 1642 DSGKLIALDKLLHNLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRGQ 1701

Query: 100  TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  +  I +      +   GLNL    + ++F+   W+  +  Q ++R+      +
Sbjct: 1702 IVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQDAQAMDRV-----HR 1755

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1756 LGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1798


>gi|322503893|emb|CBZ38979.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1285

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
            K++ LE  ++K       +++   F   L  L++             G T  +     + 
Sbjct: 870  KLQFLETALKKMRDEGHRMLIFTQFVHMLNILERFLALIGIVYTRLDGSTKAELRQQYVD 929

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 930  RFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTIDLQAQDRC-----HRIGQ 983

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R V +Y LI+++T++E +L++ R +  + ++++   +  TI
Sbjct: 984  TRPVTIYRLISEHTVEESILEKARERKKLNNVVIRGGQFHTI 1025


>gi|116198517|ref|XP_001225070.1| hypothetical protein CHGG_07414 [Chaetomium globosum CBS 148.51]
 gi|88178693|gb|EAQ86161.1| hypothetical protein CHGG_07414 [Chaetomium globosum CBS 148.51]
          Length = 1727

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL- 94
            H       K+  L+ ++ +       +++ +     +  +++             G T  
Sbjct: 1434 HRFVTDSGKLAKLDELLRQLKEGGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKL 1493

Query: 95   -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             D+           +I +      + G G+NL    + ++F+   W+     Q ++R   
Sbjct: 1494 EDRRDTVADFQTRPEIFIFLLSTRAGGLGINLTT-ADTVIFYDSDWNPTIDSQAMDR--- 1549

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1550 --AHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1589


>gi|296411575|ref|XP_002835506.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629290|emb|CAZ79663.1| unnamed protein product [Tuber melanosporum]
          Length = 812

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 30/192 (15%)

Query: 37  NGAVYYDE---------EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL--- 81
             ++Y D+         ++  K  +  K+  L+ +   I++     I++  ++   L   
Sbjct: 543 CESLYPDDYVPKDARGRDREVKVWYSGKMMVLDRMLARIQRETKDKIVLISNYTQTLDVF 602

Query: 82  ARLQKAFPQGRTL-------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNIL 132
            +L ++   G           K    + ++N+      +      + G G+NL  G N L
Sbjct: 603 EKLCRSRGYGALRLDGTMNGSKRTKLVAKFNDPDSEEFVFLLSSKAGGCGINL-IGANRL 661

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F   W+    QQ + R+      + G K+  FVY  IA  TI+E + QR   K ++  
Sbjct: 662 VLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLST 716

Query: 193 LLLNALKKETIH 204
            +++ ++    H
Sbjct: 717 SVVDGVEDVERH 728


>gi|6321275|ref|NP_011352.1| Rad54p [Saccharomyces cerevisiae S288c]
 gi|417577|sp|P32863|RAD54_YEAST RecName: Full=DNA repair and recombination protein RAD54
 gi|172343|gb|AAA34949.1| recombination and repair protein [Saccharomyces cerevisiae]
 gi|728692|emb|CAA88534.1| RAD54 [Saccharomyces cerevisiae]
 gi|1322760|emb|CAA96875.1| RAD54 [Saccharomyces cerevisiae]
 gi|285812049|tpg|DAA07949.1| TPA: Rad54p [Saccharomyces cerevisiae S288c]
          Length = 898

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +  +  +  K   LE     I+  +   I++  ++   L  ++K                
Sbjct: 647 RDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTM 706

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 707 SINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 765

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 766 VW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|297561233|ref|YP_003680207.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
            DSM 43111]
 gi|296845681|gb|ADH67701.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
            DSM 43111]
          Length = 1033

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 22/206 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     E+   L     +           +  Q+ N    +  +         K++ +E
Sbjct: 803  LYKAVVDEMGERLAEATEKERKGLVLATMSRLKQICNHPAQFLGDGSALSGRSGKLERVE 862

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
             I+  A       +    +     RL                 G    +     Q + E 
Sbjct: 863  AILASAAAEGDKALCFTQYARFGERLAPYLRSRLGVPVLWLHGGTPRAEREEMTQRFQEM 922

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            + P +      + G GLNL    N +V    WW+     Q  +R       + G +R V 
Sbjct: 923  EGPAVFLLSLKAAGTGLNLT-AANHVVHVDRWWNPAVENQATDR-----AFRIGQRRDVQ 976

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQD 192
            V  ++   T++E V + +  KS + D
Sbjct: 977  VRKMVCVGTVEERVDEMIERKSALAD 1002


>gi|258510998|ref|YP_003184432.1| SNF2-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477724|gb|ACV58043.1| SNF2-related protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 949

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 75/211 (35%), Gaps = 25/211 (11%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y      ++  + +G +  A   A  T  ++  Q+ +                 K+++
Sbjct: 713 AMYQALVDRMFAQIARGPSAMARRGAILTTLLRLKQVCDHPALI-SGGRPSVKRSGKLRS 771

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  ++          ++   F      L  A              G +       ++++ 
Sbjct: 772 LLDLLRVVVDGGEAALIFTQFREMGEMLCAAVEDELGFRPVFLHGGMSAKARGEIVEQYQ 831

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            G++  P+L     + G GLNL    N +  +  WW+     Q  +R       + G  R
Sbjct: 832 AGRMASPVLILSLRAGGVGLNLTR-ANHVFHYDRWWNPAVEDQATDR-----AYRIGQLR 885

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V+ +I   T++E + + LR K  + D++
Sbjct: 886 GVEVHKMICVGTLEERIDEMLRAKRALSDVV 916


>gi|157130680|ref|XP_001661961.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
 gi|108881922|gb|EAT46147.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
          Length = 791

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  +   I+      I++  ++   L   +K                T+ K    + E+N
Sbjct: 490 LDCMLASIKMNTDDKIVLVSNYTQTLDLFEKLCRKRGYCYVRLDGSMTIKKRGKVVDEFN 549

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G GLNL  G N LV F   W+    +Q + R+      + G K+
Sbjct: 550 KPDSKEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKK 603

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             F+Y L+A  TI+E + QR   K  + + +++
Sbjct: 604 PCFIYRLLATGTIEEKIFQRQTHKKALSNTVVD 636


>gi|258568006|ref|XP_002584747.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
 gi|237906193|gb|EEP80594.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
          Length = 1534

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQGRTL------ 94
           + K W       +  +   I +     I++  ++   L    RL ++   G         
Sbjct: 414 DVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRSRGYGSLRLDGTMN 473

Query: 95  -DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    + ++N   G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 474 VKKRQKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQQALARV 532

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K  +   ++++ +    H
Sbjct: 533 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQLLSSCVVDSAEDVERH 580


>gi|320039340|gb|EFW21274.1| SNF2 family domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 797

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 543 DVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMT 602

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    +  +N+  G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 603 VKKRQKLVDRFNDPDGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQQALARV 661

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K  +   ++++ +    H
Sbjct: 662 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQLLSSCVVDSAEDVERH 709


>gi|303311053|ref|XP_003065538.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105200|gb|EER23393.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 799

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 545 DVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMT 604

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    +  +N+  G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 605 VKKRQKLVDRFNDPDGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQQALARV 663

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K  +   ++++ +    H
Sbjct: 664 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQLLSSCVVDSAEDVERH 711


>gi|194760847|ref|XP_001962644.1| GF14336 [Drosophila ananassae]
 gi|292630861|sp|B3MMA5|RAD54_DROAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190616341|gb|EDV31865.1| GF14336 [Drosophila ananassae]
          Length = 791

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK--IP 110
           I  A    +++  ++   L   ++   + +          ++ K    + ++N+      
Sbjct: 514 IRAAGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECF 573

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 574 LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 627

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  TI+E +LQR   K ++   +++
Sbjct: 628 VASGTIEEKILQRQTHKKSLSSTIID 653


>gi|119194699|ref|XP_001247953.1| hypothetical protein CIMG_01724 [Coccidioides immitis RS]
          Length = 846

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                T
Sbjct: 530 DVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMT 589

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    +  +N+  G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 590 VKKRQKLVDRFNDPDGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQQALARV 648

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K  +   ++++ +    H
Sbjct: 649 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQLLSSCVVDSAEDVERH 696


>gi|326427315|gb|EGD72885.1| hypothetical protein PTSG_12193 [Salpingoeca sp. ATCC 50818]
          Length = 2049

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------- 93
            DE          K+  ++ ++ K  A+   +++   +   L  L+  F   +        
Sbjct: 1398 DETMERLVKASGKLLLMDKMLTKLKASGHRVLIFSQWTHVLDILEDLFVYRKHKFYRLDG 1457

Query: 94   ---LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +      I ++N     +        + G G+NL    + +  +   W+     Q I
Sbjct: 1458 DTDILDREQRITDFNRPNSDVFAFLLSTRAGGLGINL-NTADTVFIYDSDWNPHMDNQAI 1516

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R       + G KR V VY L+A+ T+DE ++++ R K  + + ++ 
Sbjct: 1517 AR-----AHRIGQKRLVMVYRLVAKGTVDEKIVEQARKKLALDEAVVE 1559


>gi|190407107|gb|EDV10374.1| DNA repair and recombination protein RAD54 [Saccharomyces
           cerevisiae RM11-1a]
          Length = 898

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +  +  +  K   LE     I+  +   I++  ++   L  ++K                
Sbjct: 647 RDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTM 706

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 707 SINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 765

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 766 VW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|151943650|gb|EDN61960.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 898

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +  +  +  K   LE     I+  +   I++  ++   L  ++K                
Sbjct: 647 RDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTM 706

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 707 SINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 765

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 766 VW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|149238896|ref|XP_001525324.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|206558165|sp|A5E0W5|INO80_LODEL RecName: Full=Putative DNA helicase ino80
 gi|146450817|gb|EDK45073.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1575

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 20/164 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++ K       +++ +     +  +++                 LD     
Sbjct: 1310 SGKLAKLDELLVKLKQEDHRVLIYFQMTKMMDLMEEYLTFKQHKYIRLDGSSKLDDRRDL 1369

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  + +I +      + G G+NL    + +VF+   W+     Q ++R       + 
Sbjct: 1370 VHDWQTKPEIFVFLLSTRAGGLGINLT-AADTVVFYDSDWNPTIDSQAMDR-----AHRL 1423

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            G  R V VY L+ +NTI+E +  R + K  +Q +++   K  TI
Sbjct: 1424 GQTRQVTVYRLLTRNTIEERMRDRAKQKEQVQQVVMEG-KATTI 1466


>gi|159130376|gb|EDP55489.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           A1163]
          Length = 681

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 427 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 486

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 487 INKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 545

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 546 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 593


>gi|15841592|ref|NP_336629.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis CDC1551]
 gi|13881841|gb|AAK46443.1| helicase, SNF2/RAD54 family [Mycobacterium tuberculosis CDC1551]
          Length = 954

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 721 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 780

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 781 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 840

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 841 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 894

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 895 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 926


>gi|256272233|gb|EEU07224.1| Rad54p [Saccharomyces cerevisiae JAY291]
 gi|259146347|emb|CAY79604.1| Rad54p [Saccharomyces cerevisiae EC1118]
          Length = 898

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +  +  +  K   LE     I+  +   I++  ++   L  ++K                
Sbjct: 647 RDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTM 706

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 707 SINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 765

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 766 VW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA 807


>gi|113475235|ref|YP_721296.1| hypothetical protein Tery_1543 [Trichodesmium erythraeum IMS101]
 gi|110166283|gb|ABG50823.1| Protein splicing site [Trichodesmium erythraeum IMS101]
          Length = 1531

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 29/221 (13%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDE 54
             Y         ++   G         +  +K  QL N  V    +K         + +  
Sbjct: 1292 LYQNIVENSLAEIDTVGGIQRKGKILALLIKLKQLCNHPVLLQIKKGSRKKVEITDKNSG 1351

Query: 55   KIK----ALEVIIEKANAAPIIVAY---------HFNSDLARLQKAFPQGRTLDKDPCTI 101
            K++     LE II +   A I   +         +    L R            K    I
Sbjct: 1352 KLQRLGAMLEEIISEEERAIIFTQFAEWGKVLQPYLQKSLGREVSFLYGSTQRSKREEMI 1411

Query: 102  QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             ++       P++     + G GLNL    N +  F  WW+     Q  +R+      + 
Sbjct: 1412 DQFQLDPQGPPVMILSLKAGGTGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RI 1465

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G  R V V+  +   T++E +   + +K  + + ++ A +K
Sbjct: 1466 GQTRNVQVHKFVCTGTLEEKIHDLIESKKELAEQVVGAGEK 1506


>gi|320581998|gb|EFW96217.1| DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 828

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 21/168 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK-----AFPQGRT--- 93
            K  +  +  K   LE     I K     I++  +F   L  ++K      F   R    
Sbjct: 577 NKDVQTWYSGKFAMLERFLFKIRKETDDKIVLISNFTQTLDLIEKLCRHHRFGTVRLDGS 636

Query: 94  --LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +N+      +      + G G+NL  G N L+     W+    QQ + 
Sbjct: 637 LGINKRQKLVDRFNDPNADEFVFLLSSKAGGCGINL-IGANRLILLDPDWNPASDQQALA 695

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G K+  F+Y  IA  TI+E + QR   K  +   ++++
Sbjct: 696 RVW-----RDGQKKNCFIYRFIATGTIEEKIFQRQSAKMELSTCVVDS 738


>gi|225678310|gb|EEH16594.1| helicase SWR1 [Paracoccidioides brasiliensis Pb03]
          Length = 1611

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
                 K+  L+ ++ +       +++ +       R     P     D+    +      
Sbjct: 1325 VTDSGKLAKLDELLRELKNGGHRVLLYFQ-MDPHDRSDGGIPHLE--DRRDTVLDFQQRP 1381

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I +      + G G+NL    + ++F+   W+     Q ++R       + G  R V V
Sbjct: 1382 EIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRLGQTRQVTV 1435

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y LI + TI+E + +R   K  +Q +++
Sbjct: 1436 YRLITRGTIEERIRKRALQKEEVQRVVI 1463


>gi|320589784|gb|EFX02240.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407]
          Length = 1885

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 19/169 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ ++ K       +++ +     +  +++             G T  +D 
Sbjct: 1600 VTDSGKLAKLDDLLFKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1659

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++    +I +      + G G+NL    + +VF+   W+     Q ++R      
Sbjct: 1660 RDTVHDFQTRPEIFIFLLSTRAGGLGINLT-SADTVVFYDSDWNPTIDSQAMDR-----A 1713

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G  R V VY +I + TI+E + +R   K  +Q +++      ++ V
Sbjct: 1714 HRLGQTRQVTVYRMITRGTIEERIRKRALQKEEVQRVVIQGGGAASMGV 1762


>gi|256080936|ref|XP_002576731.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
 gi|242318369|emb|CAZ32968.2| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
          Length = 832

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
           + +  L  +I+   +  +++  ++   L   ++                T+ K    +++
Sbjct: 586 QVLDCLLAVIKSTTSDKVVLISNYTQTLDLFERLCLQRGYNFVRLDGTMTIKKRAKVVEQ 645

Query: 104 WNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+   +  +      + G GLNL  G N LV F   W+     Q + R+      + G 
Sbjct: 646 FNDPTSRDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQ 699

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           K+  ++Y LI+  TI+E +LQR   K  +   +++
Sbjct: 700 KKQCYIYRLISTGTIEEKMLQRQAHKKALSSCVVD 734


>gi|237737828|ref|ZP_04568309.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229419708|gb|EEO34755.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 913

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 32/214 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--------VKCLQLANGAVYYDEEKHWKEVHD 53
           K Y + +R  Y ++    I+  N   KT         +  Q+ +       E     V  
Sbjct: 693 KLYEE-RRNYYYNMVHSQIK-ENGLGKTQFFILQALNELRQITSC-----PESKSVGVTS 745

Query: 54  EKIKALEV-IIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ 102
            K + L   I++   N   ++V  ++ + +  +     +         G T D+     +
Sbjct: 746 SKREVLINNILDAVENGHKVLVFTNYINSIKNICDDLEKYGIKYLSMSGATKDRQLLVDK 805

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              + K  +      + G GLNL    + +  +  WW+     Q I+R       + G  
Sbjct: 806 FQKDNKYKVFVMTLKTGGVGLNLT-AADTIFIYDPWWNKTVENQAIDR-----AYRLGQD 859

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R VF Y LI ++TI+E +LQ   +K  + D L++
Sbjct: 860 RTVFSYKLILKDTIEEKILQLQESKIKLLDSLIS 893


>gi|157877576|ref|XP_001687105.1| helicase [Leishmania major strain Friedlin]
 gi|68130180|emb|CAJ09491.1| putative helicase [Leishmania major strain Friedlin]
          Length = 1285

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
            K++ LE  ++K   +   +++   F   L  L++             G T  +     + 
Sbjct: 870  KLQFLETALKKMRDDGHRMLIFTQFVHMLNILERFLALIGVVYTRLDGSTKAELRQQYVD 929

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 930  RFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 983

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R V +Y LI+++T++E +L++ R +  + ++++   +  TI
Sbjct: 984  TRPVTIYRLISEHTVEESILEKARERKKLNNVVIRGGQFHTI 1025


>gi|262066952|ref|ZP_06026564.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379300|gb|EFE86818.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 896

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
             V   E  + K +  +K   +E +IE   N   +++  ++ S +  +  +  +      
Sbjct: 714 HIVSSPELDNNKIISSKKEVLIENVIEAIENNHKVLIFVNYLSSIESICNSLKENKIKFL 773

Query: 91  ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G+T D+     +  ++ +  +      + G GLNL    + +  +  WW+     Q 
Sbjct: 774 KMTGQTKDRQSLVDKFQSDDRYKVFVMTLKTGGVGLNL-VSADTIFIYDPWWNKTVENQA 832

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I+R       + G  + VF Y +I +NTI+E +L+    K  + D L++
Sbjct: 833 IDR-----AYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDLIS 876


>gi|312221998|emb|CBY01938.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1469

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL------ 94
           E K W       +  +   I       I++  ++   L     L ++   G         
Sbjct: 555 EVKVWYSGKMAVLDRMLARIRAETNDKIVLISNYTQTLDLFAALCRSRGYGALRLDGTMN 614

Query: 95  -DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    + ++N+ + P  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 615 VSKRQKLVDKFNDPEGPEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 673

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  I   TI+E V QR   K ++   ++++ +    H
Sbjct: 674 W-----RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDSAEDVERH 721


>gi|284040459|ref|YP_003390389.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283819752|gb|ADB41590.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1185

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 22/207 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y    +E    ++ ++  A             Q+ N    Y ++ +       K   L 
Sbjct: 961  LYQSVVQESLRAIEEKDGIARRGLVLKLMTALKQIGNHPHQYLKKGNAAPSLSGKATLLL 1020

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG 107
             ++E   AN   +++   +      L +   Q           G +  +    ++++   
Sbjct: 1021 SLLETIYANHEKVLIFTQYKEMGELLTQFIQQSFGTQPLFLHGGTSRPERDRMVEQFQRN 1080

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +          + G GLNL    N ++ F LWW+     Q  +R       + G  + V 
Sbjct: 1081 RSDHTFILSLKAGGTGLNLTQ-ANHVIHFDLWWNPAVESQATDR-----AFRIGQTKNVM 1134

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDL 193
            VY L+ Q T++E +   +R+K  + DL
Sbjct: 1135 VYRLMNQGTLEEKIDAMIRSKRELADL 1161


>gi|319942577|ref|ZP_08016886.1| hypothetical protein HMPREF9464_02105 [Sutterella wadsworthensis
            3_1_45B]
 gi|319803873|gb|EFW00795.1| hypothetical protein HMPREF9464_02105 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1352

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDE-KIKALEVIIE--KANAAPIIVAYHFNSDLA 82
                    Q+ N    +   K      D  K  AL  I+     +   +++   +     
Sbjct: 1154 LKLITSLKQICNSPSQF--LKTPSLTPDSGKGDALLEILSQCADSDRKVLIFTQYREMGE 1211

Query: 83   RLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGN 130
            RLQ    Q           G + ++    +  + E +          + G GLNL    +
Sbjct: 1212 RLQDWIAQALGERPDFLHGGVSAEERMKMVDRFQEDRTARSFILSLKAGGTGLNLT-AAS 1270

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ + LWW+     Q  +R       + G +R V VY  I   + +E +   L  K  +
Sbjct: 1271 AVIHYDLWWNPAVEAQATDR-----AFRIGQRRDVLVYRFITAGSFEERINDMLMQKRDL 1325

Query: 191  QDLLLNA 197
             D+ + A
Sbjct: 1326 ADMTVAA 1332


>gi|195398201|ref|XP_002057711.1| GJ18280 [Drosophila virilis]
 gi|292630877|sp|B4M9A8|RAD54_DROVI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194141365|gb|EDW57784.1| GJ18280 [Drosophila virilis]
          Length = 786

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG--KIP 110
           I   +   +++  ++   L   ++   + +          T+ K    +  +N+      
Sbjct: 505 IRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCF 564

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 565 LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 618

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  +I+E +LQR   K ++   +++
Sbjct: 619 VASGSIEEKILQRQTHKKSLSSSIID 644


>gi|156052200|ref|XP_001592061.1| hypothetical protein SS1G_07509 [Sclerotinia sclerotiorum 1980]
 gi|206557750|sp|A7EQA8|INO80_SCLS1 RecName: Full=Putative DNA helicase INO80
 gi|154705285|gb|EDO05024.1| hypothetical protein SS1G_07509 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1707

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ ++ K       +++ +     +  +++             G T  +D 
Sbjct: 1418 VTDSGKLAKLDSLLTKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYLRLDGSTKLEDR 1477

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++    +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1478 RDTVHDFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1531

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY +I + TI+E + +R   K  +Q +++  
Sbjct: 1532 HRLGQTRQVTVYRMITRGTIEERIRKRALQKEEVQKVVMTG 1572


>gi|328861152|gb|EGG10256.1| hypothetical protein MELLADRAFT_94587 [Melampsora larici-populina
           98AG31]
          Length = 984

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 34/225 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGA----VYYDEEKHWKEVHDEK 55
           +K+  +  +++   ++ E  +  NS ++ +  L QL        +  + E    EV +  
Sbjct: 424 VKEVKELSKQISYAIESETKDTSNSYTRLMNLLIQLRKVCDHPYLMPNSEPEPFEVAEHV 483

Query: 56  IKA------LEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
           ++A      L+ ++         I++   F   L  L+               G +  + 
Sbjct: 484 VEASNKLILLDKLLTSLIPQGKRILIFSGFTRMLDILEDFLNLRSIGFLRLDGGTSRPRR 543

Query: 98  PCTIQEWNE---GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              I+ +     G++P  +     ++ G G+NL    + +V +   W+ +   Q I R  
Sbjct: 544 SLNIRLFQNSFQGQLPKPVFLISTSAGGLGINLT-AADTVVLYDSSWNPQVDIQAIAR-- 600

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  R V VY LI   +++E +L RLR K  +   ++ A
Sbjct: 601 ---AHRIGQTRPVTVYRLICAASVEEQMLSRLRKKLYLSLKIMEA 642


>gi|325089155|gb|EGC42465.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           H88]
          Length = 830

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RTLD--KDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL +    G      T++  K    + ++N  
Sbjct: 591 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDP 649

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 650 NGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 703

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 704 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 742


>gi|46110288|ref|XP_382202.1| hypothetical protein FG02026.1 [Gibberella zeae PH-1]
 gi|84029313|sp|Q4IL82|INO80_GIBZE RecName: Full=Putative DNA helicase INO80
          Length = 1904

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ ++   K+    +++ +     +  +++             G T  +D 
Sbjct: 1622 VTDSGKLAKLDDLLFKLKSEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDR 1681

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++    +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1682 RDTVHDFQTRPEIFIFLLSTRAGGLGINLTT-ADTVIFYDSDWNPTIDSQAMDR-----A 1735

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1736 HRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVIQG 1776


>gi|317143637|ref|XP_001819595.2| DNA repair protein rhp54 [Aspergillus oryzae RIB40]
          Length = 827

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 573 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 632

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 633 VNKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 691

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 692 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 739


>gi|83767454|dbj|BAE57593.1| unnamed protein product [Aspergillus oryzae]
          Length = 815

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 561 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 620

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 621 VNKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 679

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 680 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 727


>gi|158312364|ref|YP_001504872.1| non-specific serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158107769|gb|ABW09966.1| Non-specific serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 617

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK--- 57
           + Y +     + +  G  IE      +      Q+ N    Y  E         K     
Sbjct: 386 RLYREAVDRAFTEGLGAGIERSGRVLALLTALKQICNHPAQYLREDTATPGRSGKFDRAT 445

Query: 58  -ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEW 104
             L  ++E+ +   ++V   + +    L +                G ++ +    +  +
Sbjct: 446 EMLSEVVEQDDR--VLVFTQYRAMGKLLSRYLGTALGVGLVPFLHGGLSMQRRDELVHAF 503

Query: 105 NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            E     P+L     + G GLNL    +++  +  WW+    +Q  +R       + G  
Sbjct: 504 QEDDDAPPVLLLSLRAAGFGLNLTRASHVM-HYDRWWNPAVEEQATDR-----AHRIGQS 557

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R + VY L+   TI++ + Q    K  + +++
Sbjct: 558 RTLNVYTLVTGGTIEDHIAQMHENKRGVAEIV 589


>gi|327349292|gb|EGE78149.1| DsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis ATCC 18188]
          Length = 849

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RTLD--KDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL +    G      T++  K    + ++N  
Sbjct: 610 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDP 668

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 669 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 722

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 723 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 761


>gi|239608107|gb|EEQ85094.1| DNA repair and recombination protein RAD54 [Ajellomyces
           dermatitidis ER-3]
          Length = 795

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RTLD--KDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL +    G      T++  K    + ++N  
Sbjct: 556 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDP 614

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 615 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 668

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 669 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 707


>gi|261203723|ref|XP_002629075.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
 gi|239586860|gb|EEQ69503.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
          Length = 828

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RTLD--KDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL +    G      T++  K    + ++N  
Sbjct: 589 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDP 647

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 648 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 701

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 702 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 740


>gi|225560868|gb|EEH09149.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           G186AR]
          Length = 1511

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQG-----RTLD--KDPCTIQEWN-- 105
            L  I +  N   +++  ++   L    RL +    G      T++  K    + ++N  
Sbjct: 499 MLARIRQDTNDKIVLI-SNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDP 557

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 558 NGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 611

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  TI+E + QR   K ++   ++++ +    H
Sbjct: 612 FVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 650


>gi|150865881|ref|XP_001385272.2| helicase [Scheffersomyces stipitis CBS 6054]
 gi|149387137|gb|ABN67243.2| helicase [Scheffersomyces stipitis CBS 6054]
          Length = 809

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
            K+       KI  L  +   I   N   ++V  ++   L  L+    +           
Sbjct: 507 NKNTLTTSSGKINILIPLLLEITSFNEKIVLV-SNYTKTLDLLEAVLKKLDLSFLRLDGS 565

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +     + ++N+  I +      S G GLNL  G + L+ F   W+     Q + RI
Sbjct: 566 TAKNLRNKLVNQFNKSNINVFLLSSKSGGMGLNL-VGASRLILFDNDWNPSVDLQSMSRI 624

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R  F+Y ++   TIDE + QR   KS +    L+
Sbjct: 625 -----HRDGQTRPCFIYRILTTGTIDEKIFQRQLMKSKLSSKFLD 664


>gi|255564822|ref|XP_002523405.1| Helicase, putative [Ricinus communis]
 gi|223537355|gb|EEF38984.1| Helicase, putative [Ricinus communis]
          Length = 2029

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ +  +     ++       L  L+              G 
Sbjct: 1024 PDRRLIQFDCGKLQKLAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGS 1083

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +   T+ Q +N   KI L      S G G+NL +G + ++F+   W+    QQ  +R
Sbjct: 1084 TQPEQRQTLMQRFNTNPKIFLFILSTRSGGVGINL-FGADTVIFYDSDWNPAMDQQAQDR 1142

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1143 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1184


>gi|323348699|gb|EGA82941.1| Ino80p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1374

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K++ L+ ++ K  +    +++ +     +  +++                 L+     
Sbjct: 1183 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1242

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1243 VHDWQTNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1296

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1297 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEG 1334


>gi|253798840|ref|YP_003031841.1| helicase helZ [Mycobacterium tuberculosis KZN 1435]
 gi|297634684|ref|ZP_06952464.1| helicase helZ [Mycobacterium tuberculosis KZN 4207]
 gi|297731672|ref|ZP_06960790.1| helicase helZ [Mycobacterium tuberculosis KZN R506]
 gi|313659007|ref|ZP_07815887.1| helicase helZ [Mycobacterium tuberculosis KZN V2475]
 gi|253320343|gb|ACT24946.1| helicase helZ [Mycobacterium tuberculosis KZN 1435]
 gi|328458599|gb|AEB04022.1| helicase helZ [Mycobacterium tuberculosis KZN 4207]
          Length = 849

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 616 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 675

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 676 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 735

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 736 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 789

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 790 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 821


>gi|159027170|emb|CAO86802.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1020

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 24/214 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
           + Y +        ++       +    +  ++  Q+ N  A +  E          K+  
Sbjct: 782 QLYQQLVETTLQKIEETQGIQRHGLILTLLMQLKQICNHPAHFLKENSLETSQRSGKLLR 841

Query: 59  LEVIIEK--ANAAPIIVAYHF----NSDLARLQKAFPQ--------GRTLDKDPCTIQEW 104
           LE ++E+  A     ++   F          LQK   +         +T D+     +  
Sbjct: 842 LEAMVEEVIAEGDRALIFTQFAEWGKLLQTHLQKKLAEEILFLSGSTKTKDRVEMIERFQ 901

Query: 105 NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N+ + P +      + G GLNL    N +     WW+     Q  +R       + G KR
Sbjct: 902 NDPQGPKIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQKR 955

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  I   T++E + + + +K  + +  ++A
Sbjct: 956 NVQVHKFICTGTLEERINEMIESKKQLAEQTVDA 989


>gi|238487360|ref|XP_002374918.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
 gi|220699797|gb|EED56136.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
          Length = 682

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 428 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 487

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 488 VNKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 546

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 547 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 594


>gi|255020423|ref|ZP_05292489.1| helicase, SNF2 family [Acidithiobacillus caldus ATCC 51756]
 gi|254970136|gb|EET27632.1| helicase, SNF2 family [Acidithiobacillus caldus ATCC 51756]
          Length = 1165

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 24/214 (11%)

Query: 2    KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIK 57
              Y    RE    ++GE+             +   Q+ N  A Y  E+         K  
Sbjct: 938  ALYESVVRESLQVIRGESDTFHRKGLVLQMILALKQVCNHPAHYLKEQGDRGPSISGKAS 997

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQ-------KAFP----QGRTLDKDPCTIQEW 104
             L  ++E   AN    ++   F      L+          P     G T  +    + ++
Sbjct: 998  LLLDLLEPILANHEKCLIFTQFREMGELLRPWIREATGHLPPFLHGGVTRKQRDVMVDKF 1057

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     + G GLNL    + +V + LWW+     Q  +R       + G +R
Sbjct: 1058 QQDPRERILILSLKAGGTGLNLT-AASHVVHYDLWWNPAVEAQATDR-----AYRIGQQR 1111

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+ LI + T +E + + ++TK  + +L + A
Sbjct: 1112 NVQVHRLITRATFEERINELMKTKRDLANLTVGA 1145


>gi|322828989|gb|EFZ32571.1| helicase, putative [Trypanosoma cruzi]
          Length = 1268

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L+  +++       +++   F   L  L++                  ++    + 
Sbjct: 891  KLQFLQHALKQLRREGHRMLIFTQFVHMLNILERFLAIIGIPYLRIDGSTQAERRQAFVD 950

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +NE   I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 951  RFNEDDRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 1004

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V +Y LI+++T++E +LQR R +  + ++++  
Sbjct: 1005 TKPVTIYRLISEHTVEENILQRARERKKLNNVVIRG 1040


>gi|320538119|ref|ZP_08038015.1| protein, SNF2 family [Treponema phagedenis F0421]
 gi|320145032|gb|EFW36752.1| protein, SNF2 family [Treponema phagedenis F0421]
          Length = 1211

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y    R+              SA          Q+ N    YD+          K+ 
Sbjct: 985  VAIYESLIRQQLKTALNAKDSIQRSAFIVKLLTALKQVCNHPRTYDKISPPDINLSGKML 1044

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCTIQE 103
            +L +++++        ++   +   L  L++               Q     +       
Sbjct: 1045 SLIILLKEILTAGEKTLIFSQYTETLFLLKEIIKAELDEDCLLLHGQMPARKRQQNVTAF 1104

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              E    +      + G GLNL    + ++ F LW++     Q  +R       + G ++
Sbjct: 1105 QTEPDKRIFLISLKAGGTGLNLT-AASRVIHFDLWYNPAVEDQATDR-----AFRIGQQK 1158

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VFV+  I   T +E + + ++ K  + D  L
Sbjct: 1159 HVFVHRFICAGTFEEKIDEMIQRKRAVSDKTL 1190


>gi|195435389|ref|XP_002065674.1| GK15573 [Drosophila willistoni]
 gi|292630875|sp|B4MX21|RAD54_DROWI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194161759|gb|EDW76660.1| GK15573 [Drosophila willistoni]
          Length = 784

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
           +  +   I   +   +++  ++   L   ++   + +          T+ K    +  +N
Sbjct: 502 LDFMLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFN 561

Query: 106 EG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      L      + G GLNL  G N L  F   W+    +Q + R+      + G K+
Sbjct: 562 DPENDCFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKK 615

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 616 PCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|148697110|gb|EDL29057.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_c [Mus
           musculus]
          Length = 1087

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 458 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 517

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 518 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 577

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 578 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 636

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 637 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 681


>gi|195116621|ref|XP_002002852.1| GI10760 [Drosophila mojavensis]
 gi|292630864|sp|B4KHL5|RAD54_DROMO RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193913427|gb|EDW12294.1| GI10760 [Drosophila mojavensis]
          Length = 783

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG--KIP 110
           I   +   +++  ++   L   ++   + +          T+ K    +  +N+      
Sbjct: 505 IRANSDDKVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCF 564

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 565 LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 618

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  +I+E +LQR   K ++   +++
Sbjct: 619 VASGSIEEKILQRQTHKKSLSSTIID 644


>gi|195031155|ref|XP_001988299.1| GH10642 [Drosophila grimshawi]
 gi|292630863|sp|B4JCS7|RAD54_DROGR RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193904299|gb|EDW03166.1| GH10642 [Drosophila grimshawi]
          Length = 786

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG--KIP 110
           I   +   +++  ++   L   ++   + +          T+ K    +  +N+      
Sbjct: 505 IRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCF 564

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  ++Y L
Sbjct: 565 LFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPCYIYRL 618

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  +I+E +LQR   K ++   +++
Sbjct: 619 VASGSIEEKILQRQTHKKSLSSTIID 644


>gi|237720473|ref|ZP_04550954.1| Snf2 family helicase [Bacteroides sp. 2_2_4]
 gi|229450224|gb|EEO56015.1| Snf2 family helicase [Bacteroides sp. 2_2_4]
          Length = 946

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF           G T ++        ++  +        + G GLNL     + +    
Sbjct: 817 AFHERGWKYALLTGSTNNRPSEIAHFTDQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|260815483|ref|XP_002602502.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
 gi|229287813|gb|EEN58514.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
          Length = 700

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQ 90
             KH +     K+  L+ I+    +     +++  ++   L   +K              
Sbjct: 442 SPKHIQPELSGKMLVLDYILAMTKSKTSDKVVLVSNYTQTLDLFEKLCRSRGYLYVRLDG 501

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 502 SMTIKKRAKVVERFNNPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 560

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L+A  TI+E + QR   K  +   +++
Sbjct: 561 ARVW-----RDGQKKQCYIYRLLATGTIEEKIFQRQAHKKALSSCVVD 603


>gi|115389990|ref|XP_001212500.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
 gi|114194896|gb|EAU36596.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
          Length = 821

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 567 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 626

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    + ++N+  G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 627 VKKRQKLVDKFNDPDGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 685

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 686 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 733


>gi|271968044|ref|YP_003342240.1| SNF2/helicase domain-containing protein [Streptosporangium roseum DSM
            43021]
 gi|270511219|gb|ACZ89497.1| SNF2/helicase domain protein [Streptosporangium roseum DSM 43021]
          Length = 1040

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   + G        N  +   +  Q+ N   +  ++         K+  LE
Sbjct: 811  LYKAVVNDMLDRIDGSRGIERRGNVLATMTRLKQICNHPAHLLKDGSRLAGRSGKLARLE 870

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
             + E+        +V   +    + LQ                G   ++    ++ +   
Sbjct: 871  ELAEEIVEEGDKALVFTQYTEFGSLLQPYLAAHLDRPVLWLHGGLPKNRREELVERFQRD 930

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P L      + G GLNL    N ++    WW+     Q  +R       + G  R V 
Sbjct: 931  DEPMLFLLSLKAAGTGLNLT-AANHVIHVDRWWNPAVENQATDR-----AFRIGQTRNVQ 984

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V   I  +T++E + + +  K  + + ++ A
Sbjct: 985  VRKFICVDTLEERIDEMIERKKALAESVVGA 1015


>gi|321253974|ref|XP_003192917.1| DNA repair protein [Cryptococcus gattii WM276]
 gi|317459386|gb|ADV21130.1| DNA repair protein, putative [Cryptococcus gattii WM276]
          Length = 993

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  +   I ++    ++V  ++ S L  +Q                    +    +  +N
Sbjct: 608 LDKMLHSIYQSTEEKVVVVSNWTSTLDLIQGLCKLKRYNYLRLDGSTPPKQRQELVDRFN 667

Query: 106 EGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + K      +      + G GLNL  GG+ L+ F   W+     Q + RI      + G 
Sbjct: 668 KDKERQGSFVFLLSAKAGGVGLNL-IGGSRLILFDSDWNPSTDLQAMARI-----HRDGQ 721

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           KR V++Y L+  N IDE + QR  TK+ + D +++
Sbjct: 722 KRPVYIYRLLTTNAIDEKIYQRQITKTGLSDQMMD 756


>gi|258517381|ref|YP_003193603.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257781086|gb|ACV64980.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 980

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKA 58
            Y    + ++  L+     A      S  +K  QL +    + +E+    + +   K++ 
Sbjct: 744 LYENTLQNMFERLEEAAGMARRGVILSTLMKLKQLCDHPALFLKEEVPSNIRERSLKLER 803

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  ++EK        ++   F      +Q+   +           G    +    I  + 
Sbjct: 804 LLEMVEKLRQEGDSCLIFTQFVGMGQMIQRLLQKELKEEVYFLYGGTPRARREEMITGFQ 863

Query: 106 EGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                     +      + G GLNL    + +  F  WW+     Q  +R       + G
Sbjct: 864 NFDTTKNPSNIFVLSLKAGGLGLNLT-AASHVFHFDRWWNPAVENQATDR-----SHRIG 917

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +R V V+  I   T++E + + L  K  + + ++   + 
Sbjct: 918 QQRHVQVHKFICLGTLEERIDEMLERKQGLNEQIVGGSEA 957


>gi|302307807|ref|NP_984563.2| AEL297Wp [Ashbya gossypii ATCC 10895]
 gi|299789178|gb|AAS52387.2| AEL297Wp [Ashbya gossypii ATCC 10895]
          Length = 895

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 23/166 (13%)

Query: 47  HWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
             +  H  K   LE     I  ++N   +++  ++   L  ++K                
Sbjct: 646 EVQTTHSSKFAILERFLFKIKHESNDKIVLI-SNYTQTLDLIEKMCRYNHYGVLRLDGTM 704

Query: 93  TLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T++K    + ++N+  G+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 705 TINKRQKLVDKFNDPSGEEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 763

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G K+  F+Y  I   +I+E + QR   K ++   +++
Sbjct: 764 VW-----RDGQKKDCFIYRFITTGSIEEKIYQRQSMKMSLSSCVVD 804


>gi|160883987|ref|ZP_02064990.1| hypothetical protein BACOVA_01961 [Bacteroides ovatus ATCC 8483]
 gi|156110717|gb|EDO12462.1| hypothetical protein BACOVA_01961 [Bacteroides ovatus ATCC 8483]
          Length = 946

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF           G T ++        ++  +        + G GLNL     + +    
Sbjct: 817 AFHERGWKYALLTGSTNNRPSEIAHFTDQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|260172512|ref|ZP_05758924.1| Snf2 family helicase [Bacteroides sp. D2]
 gi|315920805|ref|ZP_07917045.1| Snf2 family helicase [Bacteroides sp. D2]
 gi|313694680|gb|EFS31515.1| Snf2 family helicase [Bacteroides sp. D2]
          Length = 946

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF           G T ++        ++  +        + G GLNL     + +    
Sbjct: 817 AFHERGWKYALLTGSTNNRPSEIAHFTDQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|259485020|tpe|CBF81736.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 833

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE- 106
            L  I +  N   +++  ++   L   +K                 + K    + ++N+ 
Sbjct: 594 MLARIRQDTNDKIVLI-SNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDP 652

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 653 DGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 706

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 707 FVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 745


>gi|67538714|ref|XP_663131.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
 gi|40743497|gb|EAA62687.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
          Length = 1776

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE- 106
            L  I +  N   +++  ++   L   +K                 + K    + ++N+ 
Sbjct: 594 MLARIRQDTNDKIVLI-SNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDP 652

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL  G N LV F   W+    QQ + R+      + G K+  
Sbjct: 653 DGEEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDC 706

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 707 FVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 745


>gi|228472212|ref|ZP_04056978.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276415|gb|EEK15139.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 946

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 79/185 (42%), Gaps = 20/185 (10%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKALEVIIEKANAAPIIVAYHFNS--- 79
           +S +  ++  Q++N  +  D +       ++E +  LE ++  A  A  ++   F S   
Sbjct: 756 HSLNMLMRLRQISNHPLLADPKSDIPSGKYEEVVSCLEQLLLSAQKA--LIFSSFTSHLE 813

Query: 80  ------DLARLQKAFPQGRTL--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                 D  +++ A   G T   D+     +   + ++P  F    +   GLNL    + 
Sbjct: 814 IYQRWCDEQKIKYALLTGATALPDRKVQVERFQKDKEVPFFFISLKAGEVGLNLT-AASY 872

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++    WW+    +Q I R       + G ++ V V   ++Q+T++E +++  + K  + 
Sbjct: 873 VLLLDPWWNPFAERQAIAR-----AHRLGQEQKVNVIRFVSQHTLEEKIIRLQQHKRELS 927

Query: 192 DLLLN 196
           + ++ 
Sbjct: 928 EHIIE 932


>gi|328768836|gb|EGF78881.1| hypothetical protein BATDEDRAFT_12619 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 680

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 35/222 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY---YDEEKHWKEV-------- 51
            Y  F ++    L  +               +L N  +     D E  W           
Sbjct: 362 IYRHFSKQEMNKLAAKE-RGEKPEKAITTLKKLVNHPILLNRDDMEDSWIPKEFSFKECQ 420

Query: 52  --HDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
             +  K+  LE ++ + +A     I++  ++   L  ++K                T+ K
Sbjct: 421 PEYSGKMYLLERMLCQMHAQSSDKIVLISNYTQTLDAIEKMCRVRKWQLCRLDGTMTIQK 480

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+   P  +      + G G+NL  G N L+     W+     Q + R+   
Sbjct: 481 RQKLVDRFNDPTQPEFIFLLSSKAGGCGINL-IGANRLILTDPDWNPANDAQALARVW-- 537

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  +  F+Y  IA  TI+E + QR   K ++   +++
Sbjct: 538 ---RDGQTKVCFIYRFIATGTIEEKIFQRQAHKQSLSSCVVD 576


>gi|156838524|ref|XP_001642966.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113549|gb|EDO15108.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 353

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAF---------PQ 90
           + K+ +EV   K+K L  +++     +N   +++  ++   L  ++K             
Sbjct: 45  DSKYNREVDSGKLKVLSELLKSITQISNKEKVVIVSNYTQTLDIIEKMLHSLSLSFTRLD 104

Query: 91  GRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T ++   +I   +N    +        S G GLNL  G + L+ F   W+     Q +
Sbjct: 105 GSTPNRQRDSIVSLFNRSPHVFAFLLSAKSGGVGLNL-IGASRLILFDNDWNPAIDLQAM 163

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            RI      + G KR  F+Y L+    IDE +LQR   K ++    L
Sbjct: 164 SRI-----HRDGQKRPCFIYRLVTTGCIDEKILQRQLMKHSLSKKFL 205


>gi|308800202|ref|XP_003074882.1| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
 gi|119358821|emb|CAL52149.3| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
          Length = 1023

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
            +K   +    K++ L  ++         +++       L  L+              G 
Sbjct: 782 PDKQLVQFDCGKLQVLATLLRTLKQGNHKVLIFTQMTRMLDILESFLNLHGYSYCRLDGS 841

Query: 93  TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +    + Q +N + +I +      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 842 TSTEQRQLLTQRFNGDDRIFIFILSTRSGGFGINLT-GADTVIFYDSDWNPAMDQQAQDR 900

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V +Y LI + TI+E +LQ+   K  +  + + 
Sbjct: 901 C-----HRIGQTRDVHIYRLIGEGTIEESILQKAIQKRELDSMAIQ 941


>gi|281206043|gb|EFA80232.1| DEAD-box RNA helicase [Polysphondylium pallidum PN500]
          Length = 1657

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 46   KHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK 96
             +WK     KI AL      ++E    +  ++   + S L  +     +K     R   K
Sbjct: 1483 DNWK--SSTKIDALMQELDKVMENEPDSKSLIFSQWTSMLDLIEIPLQKKGIAFVRLDGK 1540

Query: 97   DPC-----TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             P      +I+ +  E  I +      + G GLNL    + +     WW+    +Q I+R
Sbjct: 1541 VPQKQREISIRRFKEEPNIKVFLISMKAGGLGLNLVVASH-VFLLDPWWNPATEEQAIDR 1599

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            +      + G  + VFV   + +++I+E +L+  + K  +    L  +KK+  
Sbjct: 1600 V-----YRIGQNKNVFVTRFVIKDSIEERILKLQQNKKNLAQDTLQ-MKKQIR 1646


>gi|206558287|sp|A6ZU34|INO80_YEAS7 RecName: Full=Putative DNA helicase INO80; AltName:
            Full=Inositol-requiring protein 80
 gi|151943662|gb|EDN61972.1| inositol requiring protein [Saccharomyces cerevisiae YJM789]
          Length = 1495

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K++ L+ ++ K  +    +++ +     +  +++                 L+     
Sbjct: 1304 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1363

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1364 VHDWQTNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1417

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1418 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEG 1455


>gi|6321289|ref|NP_011365.1| Ino80p [Saccharomyces cerevisiae S288c]
 gi|1723929|sp|P53115|INO80_YEAST RecName: Full=Putative DNA helicase INO80; AltName:
            Full=Inositol-requiring protein 80
 gi|1322734|emb|CAA96861.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190407095|gb|EDV10362.1| hypothetical protein SCRG_01143 [Saccharomyces cerevisiae RM11-1a]
 gi|256272250|gb|EEU07241.1| Ino80p [Saccharomyces cerevisiae JAY291]
 gi|285812061|tpg|DAA07961.1| TPA: Ino80p [Saccharomyces cerevisiae S288c]
          Length = 1489

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K++ L+ ++ K  +    +++ +     +  +++                 L+     
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1357

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W    +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1358 VHDWQTNPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1411

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1412 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEG 1449


>gi|242790191|ref|XP_002481516.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718104|gb|EED17524.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 808

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 554 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRARAYGCLRLDGTMN 613

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 614 VNKRQKLVDKFNDPNGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARV 672

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 673 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 720


>gi|299147035|ref|ZP_07040102.1| Snf2 family protein [Bacteroides sp. 3_1_23]
 gi|298514920|gb|EFI38802.1| Snf2 family protein [Bacteroides sp. 3_1_23]
          Length = 946

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF           G T ++        ++  +        + G GLNL     + +    
Sbjct: 817 AFHERGWKYALLTGSTNNRPSEIAYFTDQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|39977783|ref|XP_370279.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
 gi|206558153|sp|A4R227|INO80_MAGO7 RecName: Full=Putative DNA helicase INO80
 gi|145013701|gb|EDJ98342.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
          Length = 1944

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC 99
             +  K+  L+ ++   KA    +++ +     +  +++             G T  +D  
Sbjct: 1656 TNSGKLAKLDELLFKLKAGGHRVLLYFQMTRMIDLMEEYLTYRNWKYCRLDGSTKFEDRR 1715

Query: 100  T-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + ++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1716 DTVHDFQTNPSIFVFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----AH 1769

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1770 RLGQTRQVTVYRLITRGTIEERIRKRAMQKEEVQRVVITG 1809


>gi|293351213|ref|XP_002727727.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1065

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 420 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 479

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+             
Sbjct: 480 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 539

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 540 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 598

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 599 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 643


>gi|50308703|ref|XP_454355.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690158|sp|Q6CNY4|INO80_KLULA RecName: Full=Putative DNA helicase INO80
 gi|49643490|emb|CAG99442.1| KLLA0E08999p [Kluyveromyces lactis]
          Length = 1489

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++ K       +++ +     +  +++                 LD     
Sbjct: 1318 SAKLKKLDELLVKLKEEDHRVLIYFQMTKMMDLMEEYLTYRQYTHIRLDGSSKLDDRRDL 1377

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  +  I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1378 VHDWQTKPDIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1431

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1432 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEGKAKE 1473


>gi|320164565|gb|EFW41464.1| SNF2 family helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 2959

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 19/198 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAA 69
                +  N+     A  TV    +AN       +K   +    K++ L+ ++   +A   
Sbjct: 1357 VAQDELANVVGSAVAPLTVPFHPVANAMSAAFPDKRLIQYDCGKLQVLDTLLRDLRAGGH 1416

Query: 70   PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
              ++       L  L++                T+++    ++ +N  K I        S
Sbjct: 1417 KCLIFTQMTRVLDVLEQFLNFHGYVYLRLDGTTTIEQRQVLMERFNRDKRIFCFILSTRS 1476

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G G+NL  G + ++F+   W+     Q        R  + G  R V +Y LI++ TI+E
Sbjct: 1477 GGVGVNLT-GADTVIFYDSDWNPVWDAQA-----QDRAHRIGQTRDVHIYRLISERTIEE 1530

Query: 179  LVLQRLRTKSTIQDLLLN 196
             +L+R   K  +  +++N
Sbjct: 1531 NILRRANQKRLLDSMVIN 1548


>gi|302309580|ref|NP_987045.2| AGR379Wp [Ashbya gossypii ATCC 10895]
 gi|299788425|gb|AAS54869.2| AGR379Wp [Ashbya gossypii ATCC 10895]
          Length = 1414

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++ +  A    +++ +     +  +++                 L+     
Sbjct: 1239 SAKLKKLDELLVRLKAGEHRVLIYFQMTRMMDLIEEYLTYRQYKHIRLDGSSKLEDRRDL 1298

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  +  I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1299 VHDWQTKSDIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRL 1352

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1353 GQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEGKTKE 1394


>gi|74691592|sp|Q74Z27|INO80_ASHGO RecName: Full=Putative DNA helicase INO80
          Length = 1414

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++ +  A    +++ +     +  +++                 L+     
Sbjct: 1239 SAKLKKLDELLVRLKAGEHRVLIYFQMTRMMDLIEEYLTYRQYKHIRLDGSSKLEDRRDL 1298

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  +  I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1299 VHDWQTKSDIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRL 1352

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1353 GQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEGKTKE 1394


>gi|156845511|ref|XP_001645646.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116312|gb|EDO17788.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 941

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGR------ 92
            K  +     K   LE     I   +   I++  ++   L    RL +    G       
Sbjct: 689 SKDVQPQFSGKFAILERFLHKINTESDDKIVLISNYTQTLDLVERLCRRKQYGSVRLDGS 748

Query: 93  -TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T++K    +  +N       +      + G G+NL  G N L+     W+    QQ + 
Sbjct: 749 MTINKRQKLVDRFNSPDSHEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALA 807

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G K+  F+Y  IA  TI+E V QR   K ++   +++A
Sbjct: 808 RVW-----RDGQKKDCFIYRFIATGTIEEKVYQRQSMKMSLSSCVVDA 850


>gi|148697109|gb|EDL29056.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_b [Mus
           musculus]
          Length = 1110

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 465 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 524

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 525 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 584

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 585 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 643

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 644 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 688


>gi|66361330|pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
          Length = 500

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S  +K  Q+ +        +        K+     IIE+A      I +   F      
Sbjct: 298 LSTLLKLKQIVDHPALLKGGEQSVR-RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKI 356

Query: 84  LQKAFPQ----------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           ++    +          G    K+   I  +  N   +  +     + G G+NL    N 
Sbjct: 357 IRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT-SANR 415

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R+      + G  R V V+ LI+  T++E + Q L  K ++ 
Sbjct: 416 VIHFDRWWNPAVEDQATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 470

Query: 192 DLLLNA 197
             ++++
Sbjct: 471 KDIISS 476


>gi|118344288|ref|NP_001071967.1| SWI/SNF protein [Ciona intestinalis]
 gi|70571306|dbj|BAE06719.1| Ci-SWI/SNF [Ciona intestinalis]
          Length = 1003

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 40/229 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD------ 43
           K Y    K QRE Y  +  ++I+  N+A +T +       +QL    N    +D      
Sbjct: 363 KIYTGLSKMQREWYTKILVKDIDIINAAGRTDRVRLLNILMQLRKCCNHPYLFDGAEPGP 422

Query: 44  --EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQ 90
                    V+  K+  L+ ++   +     +++       L  L+              
Sbjct: 423 PYTTSEHLVVNSGKLSVLDKLLPKFQEQGDRVLIFSQMTRILDILEDYCMWRGYNYCRLD 482

Query: 91  GRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G+T  +D    I E+N    +  +      + G G+NL    NI++ F   W+ +   Q 
Sbjct: 483 GQTPHEDRQRQINEFNRPGSEKFIFMLSTRAGGLGINLMT-ANIVILFDSDWNPQVDMQA 541

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++R       + G K+ V V+ LI +NT++E +++R   K  + ++++ 
Sbjct: 542 MDR-----AHRIGQKKQVMVFRLITENTVEERIIERAEMKLHLDNIVIQ 585


>gi|237716743|ref|ZP_04547224.1| Snf2 family helicase [Bacteroides sp. D1]
 gi|262405519|ref|ZP_06082069.1| Snf2 family helicase [Bacteroides sp. 2_1_22]
 gi|294646342|ref|ZP_06723989.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806677|ref|ZP_06765508.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229442726|gb|EEO48517.1| Snf2 family helicase [Bacteroides sp. D1]
 gi|262356394|gb|EEZ05484.1| Snf2 family helicase [Bacteroides sp. 2_1_22]
 gi|292638297|gb|EFF56668.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446097|gb|EFG14733.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 946

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF +         G T ++         +  +        + G GLNL     + +    
Sbjct: 817 AFRERGWKYALLTGATNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|241950361|ref|XP_002417903.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
 gi|223641241|emb|CAX45621.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
          Length = 839

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK--AFPQGRTL----- 94
            +  +     K   LE     I K     I++  ++   L  ++K   + +   L     
Sbjct: 587 NREIQTWFSGKFLILERFLRKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGT 646

Query: 95  ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N+   P  +      + G G+NL  G N LV     W+    QQ + 
Sbjct: 647 MNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQQALA 705

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+  F+Y LI+  TI+E + QR   K ++   +++
Sbjct: 706 RVW-----RDGQKKDCFIYRLISTGTIEEKIFQRQSMKMSLSSCVVD 747


>gi|212534456|ref|XP_002147384.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
 gi|210069783|gb|EEA23873.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
          Length = 808

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 554 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMN 613

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    + ++N   G+  +      + G G+NL  G N LV F   W+    QQ + R+
Sbjct: 614 VNKRQKLVDKFNDPNGEEFIFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARV 672

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 673 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 720


>gi|195161916|ref|XP_002021802.1| GL26701 [Drosophila persimilis]
 gi|292630865|sp|B4GS98|RAD54_DROPE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194103602|gb|EDW25645.1| GL26701 [Drosophila persimilis]
          Length = 782

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 21/173 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQKAFPQGR 92
            + Y+ +         K K L+ +   I       +++  ++   L     L +    G 
Sbjct: 482 PINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKRKYGF 541

Query: 93  T-------LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   + K    +  +N+      L      + G GLNL  G N L  F   W+   
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPAN 600

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q + R+      + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 601 DEQAMARVW-----RDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|281209956|gb|EFA84124.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1905

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 44/228 (19%)

Query: 6    KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
            +FQ++LY   L    +++      N+ +      QL N       + + K   D      
Sbjct: 1119 EFQKKLYRAVLDNNGVDSIIAGKQNALTTMTTLKQLCNYPSLIKSDDYSKYFTDSNDTTT 1178

Query: 54   ------------EKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGR 92
                        E ++ L + ++      ++V  ++   L           +Q     G+
Sbjct: 1179 PTDFDASQSGKMEFVEQLLITLKSLGDRAVLV-SNYTQTLDVFELLLKKLSIQSYRIDGQ 1237

Query: 93   TLDKDPCT-IQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +    + ++N+       +      + G GLNL  G N +V +   W+     Q +
Sbjct: 1238 VKATERQDRVDKFNDPSNKTHTVFLLSSKAGGVGLNL-IGANHIVLYDPDWNPAIDIQAM 1296

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ER+      + G  + V +Y L+   TI+E + QR   K ++ + +++
Sbjct: 1297 ERVW-----REGQTKPVSIYRLLTAGTIEEKIHQRQIIKESLSNSVVD 1339


>gi|154338690|ref|XP_001565567.1| DNA repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062619|emb|CAM39061.1| putative DNA repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1099

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 49   KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLAR----LQKAFPQGR------TLDKD 97
            K +H  K+ A+   IE+      ++V   F S L      LQ+ F +        TL + 
Sbjct: 926  KPLHGTKLDAIADYIERVPKDEKVVVFSQFGSMLDLMQYWLQRRFIKAVKLCGSLTLTQR 985

Query: 98   PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +Q + ++  + ++     + G GLNLQ   N +V    WW+     Q ++R      
Sbjct: 986  QSVLQAFLHDRSVRVILISLKAGGEGLNLQV-ANHVVLTDPWWNPAVEMQAVQR-----A 1039

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1040 HRIGQTRPVHAVRFVTEHSVEERMVDLQEKKMLVFEGTIDG 1080


>gi|269127783|ref|YP_003301153.1| SNF2-like protein [Thermomonospora curvata DSM 43183]
 gi|268312741|gb|ACY99115.1| SNF2-related protein [Thermomonospora curvata DSM 43183]
          Length = 990

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 69/210 (32%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     ++   +      A       +   +  Q+ N       +         K++ L
Sbjct: 759 LYQATVDDMLAQIAEAGSSAARRGLVLATMARLKQVCNHPAQLLRDGSRLAGRSGKLERL 818

Query: 60  EVI----IEKANAAPIIVAY-HFNSDL-----ARL--QKAFPQGRT--LDKDPCTIQEWN 105
           E I    +E+   A     Y  F + L     ARL     +  G T    +D    +   
Sbjct: 819 EEICAQVVERGEKALAFTQYAEFGAMLQPYLAARLGCPVLWLHGGTPRRVRDELVRRFQE 878

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E +  +      + G GL L    N +V    WW+     Q  +R       + G  R V
Sbjct: 879 EAEPAVFLLSLKAAGTGLTLT-AANHVVHIDRWWNPAVEDQATDR-----AFRIGQTRDV 932

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LI   T++E V + +  K  +   ++
Sbjct: 933 QVRKLICVGTLEERVEEMIERKKALAGSVV 962


>gi|58265682|ref|XP_569997.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226229|gb|AAW42690.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 993

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 24/183 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKI---KALEVIIEKANAAPIIVAYHFNSDLARLQK------ 86
           A  A+  D   +      + +   K L  I +      ++V  ++ S L  +Q       
Sbjct: 586 AISAIPSDANINDVTTSGKMLMLDKMLHSIYQCTEEK-VVVVSNWTSTLDLIQGLCKLKR 644

Query: 87  ----AFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                        +    +  +N+ K      +      + G GLNL  GG+ L+ F   
Sbjct: 645 YNYLRLDGSTPPKQRQELVDRFNKDKGRQESFVFLLSAKAGGVGLNL-IGGSRLILFDSD 703

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q + RI      + G KR V++Y  +  N IDE + QR  TK+ + D +++  
Sbjct: 704 WNPSTDLQAMARI-----HRDGQKRPVYIYRFLTTNAIDEKIYQRQITKTGLSDQMMDQT 758

Query: 199 KKE 201
           + E
Sbjct: 759 RTE 761


>gi|134109445|ref|XP_776837.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259517|gb|EAL22190.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1045

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 24/183 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKI---KALEVIIEKANAAPIIVAYHFNSDLARLQK------ 86
           A  A+  D   +      + +   K L  I +      ++V  ++ S L  +Q       
Sbjct: 638 AISAIPSDANINDVTTSGKMLMLDKMLHSIYQCTEEK-VVVVSNWTSTLDLIQGLCKLKR 696

Query: 87  ----AFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                        +    +  +N+ K      +      + G GLNL  GG+ L+ F   
Sbjct: 697 YNYLRLDGSTPPKQRQELVDRFNKDKGRQESFVFLLSAKAGGVGLNL-IGGSRLILFDSD 755

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q + RI      + G KR V++Y  +  N IDE + QR  TK+ + D +++  
Sbjct: 756 WNPSTDLQAMARI-----HRDGQKRPVYIYRFLTTNAIDEKIYQRQITKTGLSDQMMDQT 810

Query: 199 KKE 201
           + E
Sbjct: 811 RTE 813


>gi|255718981|ref|XP_002555771.1| KLTH0G17028p [Lachancea thermotolerans]
 gi|238937155|emb|CAR25334.1| KLTH0G17028p [Lachancea thermotolerans]
          Length = 1000

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKA-----FPQGR-----TLDKDPCTIQEWN--EGKIP 110
           I+  +   I++  ++   L  ++K      +P  R     T++K    +  +N  EG+  
Sbjct: 770 IKTESDDKIVIISNYTQTLDLIEKMCRSSTYPVVRLDGTMTINKRQKLVDRFNDPEGQEF 829

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N L+     W+    QQ + R+      + G K+  F+Y  
Sbjct: 830 IFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALARVW-----RDGQKKDCFIYRF 883

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           I   +I+E + QR   K ++   +++
Sbjct: 884 ICTGSIEEKIYQRQSMKMSLSSCVVD 909


>gi|169600905|ref|XP_001793875.1| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
 gi|160705541|gb|EAT90036.2| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
          Length = 831

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           ++  K  +  K+  L+ +   I       I++  ++   L                    
Sbjct: 553 DREVKVWYSGKMLVLDRMLARIRAETNDKIVLISNYTQTLDIFAALCRSRGYGCLRLDGT 612

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             + K    + ++N+ + P  +      + G GLNL  G N LV F   W+    QQ + 
Sbjct: 613 MNVSKRQKLVDKFNDPEGPEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALA 671

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY  I   TI+E V QR   K ++   ++++ +    H
Sbjct: 672 RVW-----RDGQKKDCFVYRFITTGTIEEKVFQRQSHKQSLSSCVVDSAEDVERH 721


>gi|154346446|ref|XP_001569160.1| helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066502|emb|CAM44296.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1284

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 19/162 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
            K++ LE  ++K   +   +++   F + L  L++             G T  +     + 
Sbjct: 869  KLQFLETALKKMRHDGHRVLIFTQFVNMLNILERFLALIGVVYTRLDGSTKAELRQQYVD 928

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 929  RFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 982

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R V +Y LI+++T++E +L++ R +  + ++++   +  TI
Sbjct: 983  TRPVTIYRLISEHTVEESILEKARERKKLNNVVIRGGQFHTI 1024


>gi|299753319|ref|XP_001833199.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298410246|gb|EAU88472.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 840

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--E 106
           L  I  + N   +++  ++   L   +K                ++ K    + ++N   
Sbjct: 607 LHQIHTQTNDKIVLI-SNYTQTLDLFEKLLRSKKYGYFRLDGTMSITKRQKLVDQFNDPN 665

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +      + G G+NL  G N L+ F   W+    QQ + R+      + G K+  F
Sbjct: 666 GKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKECF 719

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           VY  I+  TI+E + QR  +K  +   +++  +    H
Sbjct: 720 VYRFISTGTIEEKIFQRQASKQALSSAVVDEKEDTERH 757


>gi|284174757|ref|ZP_06388726.1| hypothetical protein Ssol98_08906 [Sulfolobus solfataricus 98/2]
          Length = 319

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S  +K  Q+ +        +        K+     IIE+A      I +   F      
Sbjct: 117 LSTLLKLKQIVDHPALLKGGEQSVR-RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKI 175

Query: 84  LQKAFPQ----------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           ++    +          G    K+   I  +  N   +  +     + G G+NL    N 
Sbjct: 176 IRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT-SANR 234

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R+      + G  R V V+ LI+  T++E + Q L  K ++ 
Sbjct: 235 VIHFDRWWNPAVEDQATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 289

Query: 192 DLLLNA 197
             ++++
Sbjct: 290 KDIISS 295


>gi|254583686|ref|XP_002497411.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
 gi|238940304|emb|CAR28478.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
          Length = 848

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------- 93
           K  +  +  K   LE     I   +   I++  ++   L  ++K   Q R          
Sbjct: 597 KDLQVKYSSKFSILERFLAKIRSESDDKIVIISNYTQTLDLIEKLCRQKRYGSVRLDGTM 656

Query: 94  -LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            ++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 657 GINKRQKLVDRFNDPEGQEFVFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALAR 715

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G K+  F+Y  I+  +I+E + QR   K ++   +++A
Sbjct: 716 VW-----RDGQKKDCFIYRFISTGSIEEKIYQRQSMKLSLSSCVVDA 757


>gi|149239498|ref|XP_001525625.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451118|gb|EDK45374.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 875

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +  +     K + LE     I++     I++  ++   L  ++K               
Sbjct: 623 NREIQTWFSGKFQVLERFLHKIKRETNDKIVLISNYTQTLDLIEKMCRYKKYGALRLDGT 682

Query: 92  RTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +N+  G   +      + G G+NL  G N LV     W+    QQ + 
Sbjct: 683 MNINKRQKLVDRFNDPDGAEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQQALA 741

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 742 RVW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 783


>gi|328865915|gb|EGG14301.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1343

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
            +K   +    K++ L  ++ +        ++       L   +              G 
Sbjct: 229 PDKRLVQYDCGKLQKLAELLRELKKGGHRALIFTQMTKMLDVFEGFLNLHGYTYVRLDGS 288

Query: 93  TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +    + + +N + +I L      S G GLNL  G + ++F+   W+     Q  +R
Sbjct: 289 TKVERRQLLTERFNKDNRIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDR 347

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G  R V +Y LI Q+TI+E +L++   K  + D+++  
Sbjct: 348 C-----HRIGQTREVHIYRLITQHTIEENILKKSNQKRQLDDMVIQG 389


>gi|304408004|ref|ZP_07389654.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304343023|gb|EFM08867.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 966

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 26  ASKTVKCLQLANGAVY----YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            S   K  QL +              W      K   L  +IE+  A     +V   F  
Sbjct: 756 LSALTKLKQLCDHPQLLLGEGVAGDAWDIERSNKTLRLVEMIEEIAAEGEKCLVFTQFVD 815

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQ 126
               LQ+   +           G    +    I+ +     P         + G GLNL 
Sbjct: 816 MGLTLQRLLEERIGLPVPYLHGGVPKAQRDAMIERFQHSDAPGCAFVLSLKAGGTGLNLT 875

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              N +  F  WW+     Q  +R       + G  + V V+  +   T++E + Q +  
Sbjct: 876 -AANHVFHFDRWWNPAVENQATDR-----AFRIGQTKKVQVHKFVTLGTLEERIDQMIDR 929

Query: 187 KSTIQDLLLN 196
           K ++ D +++
Sbjct: 930 KQSLNDQIVS 939


>gi|75759628|ref|ZP_00739713.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492873|gb|EAO56004.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 168

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 17/154 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTI-Q 102
           +++++ LE    +     I++       L           +   +  G T  ++   +  
Sbjct: 2   NKRLEILEE-CRQXTGKRILIDSPLTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCD 60

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +NEG+  L      + G GLNL  G + ++ + LWW+    QQ  +R       + G K
Sbjct: 61  RFNEGEGELFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQQAADR-----AYRMGQK 114

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ TI+E + +   +K  +   ++ 
Sbjct: 115 NTVQVIKLVAQGTIEEKMHELQESKKNLIAEVIE 148


>gi|298480485|ref|ZP_06998682.1| Snf2 family protein [Bacteroides sp. D22]
 gi|298273306|gb|EFI14870.1| Snf2 family protein [Bacteroides sp. D22]
          Length = 946

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVKHLEVLAE 816

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF +         G T ++         +  +        + G GLNL     + +    
Sbjct: 817 AFRERGWKYALLTGATNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|295086172|emb|CBK67695.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacteroides
           xylanisolvens XB1A]
          Length = 946

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVKHLEVLAE 816

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF +         G T ++         +  +        + G GLNL     + +    
Sbjct: 817 AFRERGWKYALLTGATNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|148697108|gb|EDL29055.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_a [Mus
           musculus]
          Length = 1103

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 458 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 517

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 518 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 577

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 578 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 636

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 637 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 681


>gi|322700261|gb|EFY92017.1| Putative DNA helicase ino-80 [Metarhizium acridum CQMa 102]
          Length = 1925

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLD 95
            H       K+  L+ ++ K       +++ +     +  +++             G T  
Sbjct: 1643 HKFVTDSGKLAKLDELLFKLKNEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKL 1702

Query: 96   KDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +D    + ++    +I +      + G G+NL    + ++F+   W+     Q ++R   
Sbjct: 1703 EDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR--- 1758

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1759 --AHRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1800


>gi|293368877|ref|ZP_06615480.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292636026|gb|EFF54515.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 946

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            ++  QL+     +  D      +   + I+  + +  ++    +++   F   L  L +
Sbjct: 760 ILRLRQLSCHPQLILPDYTGTSGKTA-QIIETFDTL--QSEGHKVLIFSSFVRHLEVLAE 816

Query: 87  AF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           AF           G T ++        ++  +        + G GLNL     + +    
Sbjct: 817 AFHERGWKYTLLTGSTNNRPSEIAYFTDQKDVQAFLISLKAGGVGLNLTQADYVFI-IDP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+     Q I R       + G  + V  Y  I QN+I+E +L     K  + +  +
Sbjct: 876 WWNPAAESQAIAR-----AHRIGQDKQVIAYRFITQNSIEEKILHLQDEKRKLAETFV 928


>gi|66361321|pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
 gi|66361322|pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
          Length = 271

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S  +K  Q+ +        +        K+     IIE+A      I +   F      
Sbjct: 69  LSTLLKLKQIVDHPALLKGGEQSVR-RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKI 127

Query: 84  LQKAFPQ----------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           ++    +          G    K+   I  +  N   +  +     + G G+NL    N 
Sbjct: 128 IRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT-SANR 186

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R+      + G  R V V+ LI+  T++E + Q L  K ++ 
Sbjct: 187 VIHFDRWWNPAVEDQATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 241

Query: 192 DLLLNA 197
             ++++
Sbjct: 242 KDIISS 247


>gi|327277378|ref|XP_003223442.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Anolis carolinensis]
          Length = 1049

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 404 VKIYLGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 463

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ K     + ++V       L  L+             
Sbjct: 464 PPYTTDTHLVTNSGKMVALDKLLSKLKEQGSRVLVFSQMTRLLDILEDYCMWRGYEYCRL 523

Query: 90  QGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 524 DGQTPHEEREEAIDTFNAPNSRKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 582

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 583 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 627


>gi|148675685|gb|EDL07632.1| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFP 89
            A  +D+ +   +V    +  LE I +   +   ++   + S L          RL  A  
Sbjct: 957  AELFDDTRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATI 1015

Query: 90   QGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q 
Sbjct: 1016 DGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQA 1074

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1075 CDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1119


>gi|17540630|ref|NP_502137.1| hypothetical protein F54E12.2 [Caenorhabditis elegans]
 gi|3873712|emb|CAA97421.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3877578|emb|CAB05213.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1091

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 20/154 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWN 105
            ++ +E I+EK     +++   + S L  ++              G+ L KD    +  +N
Sbjct: 923  LEIVENIMEK--KEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFN 980

Query: 106  --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +G   ++    A+ G GLNL  GGN LV   L W+    QQ  +RI      + G K+
Sbjct: 981  REKGGARVMLLSLAAGGVGLNLT-GGNHLVMVDLHWNPALEQQAFDRI-----YRMGQKK 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VF++ L+ + TI++ V+   + K  +   +L+ 
Sbjct: 1035 DVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDG 1068


>gi|221501950|gb|EEE27701.1| E1a binding protein P400, putative [Toxoplasma gondii VEG]
          Length = 2924

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
              K   +    K+  L  ++   +A+    ++   F+  L  L+                
Sbjct: 2540 PHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDGS 2599

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D+    +  +N   +I L  +   + G GLNL  G + ++F+   W+    +Q ++R
Sbjct: 2600 TKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPAMDRQAMDR 2658

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2659 C-----HRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2699


>gi|237844353|ref|XP_002371474.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211969138|gb|EEB04334.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 2894

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
              K   +    K+  L  ++   +A+    ++   F+  L  L+                
Sbjct: 2510 PHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDGS 2569

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D+    +  +N   +I L  +   + G GLNL  G + ++F+   W+    +Q ++R
Sbjct: 2570 TKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPAMDRQAMDR 2628

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2629 C-----HRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2669


>gi|30840950|gb|AAL29689.1| Snf2-related chromatin remodeling factor SRCAP [Toxoplasma gondii]
 gi|221481249|gb|EEE19646.1| hypothetical protein TGGT1_072500 [Toxoplasma gondii GT1]
          Length = 2924

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
              K   +    K+  L  ++   +A+    ++   F+  L  L+                
Sbjct: 2540 PHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDGS 2599

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D+    +  +N   +I L  +   + G GLNL  G + ++F+   W+    +Q ++R
Sbjct: 2600 TKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPAMDRQAMDR 2658

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2659 C-----HRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2699


>gi|198417079|ref|XP_002130103.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
          Length = 775

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 32/203 (15%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI------------KALEVIIEKANAAPIIV 73
           A    KCLQ  +G    D  K +    + K+              L  +   + +   ++
Sbjct: 489 ALIYEKCLQQESGC--EDMRKIFPSNFNPKLVQPELSGKMKLVDYLLAVTRTSTSDKFVL 546

Query: 74  AYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGH 121
             ++   L   ++                T+ K    ++++N    P  +      + G 
Sbjct: 547 VSNYTQTLDLCEQLCRSRRYMFVRLDGSMTIKKRAKVVEKFNNPSSPEFVFMLSSKAGGC 606

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N LV F   W+    +Q + R+      + G K+  F+Y L+   TI+E + 
Sbjct: 607 GLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLGTGTIEEKIF 660

Query: 182 QRLRTKSTIQDLLLNALKKETIH 204
           QR   K  +   +++  +    H
Sbjct: 661 QRQAHKKALSSCVVDQEEDVARH 683


>gi|74008383|ref|XP_865586.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 19 [Canis familiaris]
          Length = 1055

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++   K
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGK 639


>gi|322708209|gb|EFY99786.1| Putative DNA helicase ino-80 [Metarhizium anisopliae ARSEF 23]
          Length = 1927

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ ++ K       +++ +     +  +++             G T  +D 
Sbjct: 1648 VTDSGKLAKLDELLFKLKNEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDR 1707

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++    +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1708 RDTVHDFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1761

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1762 HRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1802


>gi|218780869|ref|YP_002432187.1| serine/threonine protein kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762253|gb|ACL04719.1| Non-specific serine/threonine protein kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 896

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            S  ++  Q+ N    Y  +  +      K   L+ I E+  +     ++   F      
Sbjct: 690 LSFLMRFKQICNHPSQYIGDGEYSPNKSGKFLRLKEICEEIASRQEKALIFTQFREMTDP 749

Query: 84  LQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
           L     +           G  + K    +  +      P       + G GLNL    + 
Sbjct: 750 LAAYLGEIFGREGLILHGGTPVKKRKNLVDVFQRDDGPPFFVLSLKAGGTGLNLTNASH- 808

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R       + G  + V V+  + + T++E +   +  K  + 
Sbjct: 809 VIHFDRWWNPAVENQATDR-----AFRIGQHKNVLVHKFVCRGTLEEKIDALIEEKIGLA 863

Query: 192 DLLLNA 197
           + +L A
Sbjct: 864 EGVLKA 869


>gi|262050608|ref|NP_444353.3| probable global transcription activator SNF2L1 [Mus musculus]
 gi|81911462|sp|Q6PGB8|SMCA1_MOUSE RecName: Full=Probable global transcription activator SNF2L1;
           AltName: Full=ATP-dependent helicase SMARCA1; AltName:
           Full=DNA-dependent ATPase SNF2L; AltName:
           Full=Nucleosome-remodeling factor subunit SNF2L;
           AltName: Full=SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 1
 gi|34783716|gb|AAH57115.1| Smarca1 protein [Mus musculus]
 gi|123123060|emb|CAM19308.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1046

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 596 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 640


>gi|50553882|ref|XP_504352.1| YALI0E24431p [Yarrowia lipolytica]
 gi|49650221|emb|CAG79951.1| YALI0E24431p [Yarrowia lipolytica]
          Length = 940

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 37/225 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKI 56
            Y K   E    L+   +++F S    +   ++ N  +   E+            +  K+
Sbjct: 588 IYTKLSSEYLNRLERHQVDSFKS---ILSLRKVCNSPILLSEDGPALDSGKAYLRNSGKM 644

Query: 57  KALEVII---------EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
             L  +I         +  NA  +++   F   L  ++      +               
Sbjct: 645 NTLFRMIGQLRARNKMDPDNAEKVVIVSSFTQTLDVIEGLVKDLKLSFTRLDGSVQASAR 704

Query: 98  PCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++++N        +      + G G+NL  G + L  F   W+     Q + RI   
Sbjct: 705 AKIVKQFNSSSADSCFVFLLSARAGGVGINL-IGASRLFLFDPDWNPAVDLQAMARI--- 760

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V++Y L+    IDE + QR   K+ + + L+   +
Sbjct: 761 --HRDGQKKPVYIYRLLTTGCIDEKIFQRQTIKTGLANSLIEGTE 803


>gi|326445042|ref|ZP_08219776.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1242

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 40/223 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY------DEEKHWK 49
             Y    R+         I A +                Q+ N    Y      D E    
Sbjct: 1010 LYEANVRDTL-----REITASSGIERRGLVLKLLQALRQICNTPTLYLKEPLEDAEPATL 1064

Query: 50   EVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRTLD-----------K 96
                 K+ AL+ ++    A     +V   +     R+ +   + R              +
Sbjct: 1065 ARRSGKLAALDDLMSTLAARSEAALVFTGYVQM-GRILEHHLRARGRSVRFLHGGTPPAR 1123

Query: 97   DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +       P+L     + G GL L    + ++ +   W+     Q  +R    
Sbjct: 1124 RQELVDIFQHDPDPAPVLILSVKAAGTGLTLTRAEH-VIHYDRPWNPAVEDQATDR---- 1178

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G  R V V++LI + T+++ + + L  K  + D +L +
Sbjct: 1179 -AHRIGQNRTVQVHHLITEGTVEDHISELLARKRALTDAVLTS 1220


>gi|215446324|ref|ZP_03433076.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis T85]
          Length = 547

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 314 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 373

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 374 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 433

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 434 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 487

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 488 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 519


>gi|289758218|ref|ZP_06517596.1| superfamily II DNA/RNA helicase [Mycobacterium tuberculosis T85]
 gi|289713782|gb|EFD77794.1| superfamily II DNA/RNA helicase [Mycobacterium tuberculosis T85]
          Length = 545

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 312 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 371

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 372 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 431

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 432 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 485

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 486 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 517


>gi|194210929|ref|XP_001917731.1| PREDICTED: transcription termination factor, RNA polymerase II [Equus
            caballus]
          Length = 1167

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            + +N+E  ++ +   KC Q+      +++ +   ++    +  LE I   + +   ++  
Sbjct: 967  ELDNLEPSSTVALNGKCFQVE----LFEDVRESTKISS-LLAELEAIRRNSGSQKSVIVS 1021

Query: 76   HFNSDLA----RLQKAFPQGRTLDKDPCT------IQEWNEGKIP-LLFAHPASCGHGLN 124
             + S L      L++      T+D           ++ +N  + P ++     + G GLN
Sbjct: 1022 QWTSMLKVVALHLKRRGLTYATIDGSVNPKQRMDLVEAFNSSRGPQVMLISLLAGGVGLN 1081

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  GGN L    + W+     Q  +RI      + G ++ V ++  + + T++E +LQ  
Sbjct: 1082 LT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQ 1135

Query: 185  RTKSTIQDLLLNA 197
              K  +   +L+ 
Sbjct: 1136 EKKKDLAKQVLSG 1148


>gi|154277928|ref|XP_001539795.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
 gi|150413380|gb|EDN08763.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
          Length = 684

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 19/153 (12%)

Query: 64  EKANAAPIIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQEWN--EGKIPL 111
           +  N   +++  ++   L    RL +              + K    + ++N   G+  +
Sbjct: 451 DDTNDKIVLI-SNYTQTLDLFERLCRTRRYGCLRLDGTMNVTKRQKLVDKFNDPNGEEFV 509

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL  G N LV F   W+    QQ + R+      + G K+  FVY  I
Sbjct: 510 FLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQQALARVW-----RDGQKKDCFVYRFI 563

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           A  TI+E + QR   K ++   ++++ +    H
Sbjct: 564 ATGTIEEKIFQRQSHKQSLSSCVVDSAEDVERH 596


>gi|225441419|ref|XP_002275336.1| PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
            1); ATP binding / DNA binding / helicase [Vitis vinifera]
          Length = 2049

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ K  +     ++       L  L+              G 
Sbjct: 1038 PDRRLIQFDCGKLQELAVLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1097

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   KI +      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1098 TQPEERQTLMQRFNTNPKIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1156

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1157 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1198


>gi|254393251|ref|ZP_05008403.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197706890|gb|EDY52702.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 759

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 40/223 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY------DEEKHWK 49
            Y    R+         I A +                Q+ N    Y      D E    
Sbjct: 527 LYEANVRDTL-----REITASSGIERRGLVLKLLQALRQICNTPTLYLKEPLEDAEPATL 581

Query: 50  EVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRTLD-----------K 96
                K+ AL+ ++    A     +V   +     R+ +   + R              +
Sbjct: 582 ARRSGKLAALDDLMSTLAARSEAALVFTGYVQM-GRILEHHLRARGRSVRFLHGGTPPAR 640

Query: 97  DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +       P+L     + G GL L    + ++ +   W+     Q  +R    
Sbjct: 641 RQELVDIFQHDPDPAPVLILSVKAAGTGLTLTRAEH-VIHYDRPWNPAVEDQATDR---- 695

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V V++LI + T+++ + + L  K  + D +L +
Sbjct: 696 -AHRIGQNRTVQVHHLITEGTVEDHISELLARKRALTDAVLTS 737


>gi|167383963|ref|XP_001736758.1| helicase [Entamoeba dispar SAW760]
 gi|165900796|gb|EDR27036.1| helicase, putative [Entamoeba dispar SAW760]
          Length = 954

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 20/166 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP- 98
           +   K+  +E ++EK   N   I++       L           ++     G+T  +D  
Sbjct: 404 LSSAKMIVMEKLVEKHLKNNGKILIFSQMTRMLDIIDDYLVFKEIEHYRIDGQTQQEDRV 463

Query: 99  CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N   GK+ +      S G G+NLQ   + ++ +   W+ +   Q ++R      
Sbjct: 464 EQINDFNDPNGKVSIFLLSTRSGGLGINLQ-SADTVILYDSDWNPQSDIQAMDR-----A 517

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + G  + V VY LI + T ++ +++    K  +  L++ + K  T
Sbjct: 518 HRIGQTKPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGKTAT 563


>gi|74008365|ref|XP_865429.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 10 [Canis familiaris]
          Length = 1050

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 421 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 480

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 481 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 540

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 541 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 599

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 600 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 644


>gi|229490063|ref|ZP_04383916.1| SNF2 family domain protein [Rhodococcus erythropolis SK121]
 gi|229323164|gb|EEN88932.1| SNF2 family domain protein [Rhodococcus erythropolis SK121]
          Length = 938

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 26/212 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWK----EVHDEK 55
             Y     E+   ++G        A  +   K  Q+ N   ++  +        +    K
Sbjct: 703 ALYRAVVDEMMAQIKGTEGMKRKGAVLSALTKLKQVCNHPAHFLRDGSPVMRRGQHRSGK 762

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I+E   A+   +++   F      +                 G +       ++
Sbjct: 763 LGLVEDIVESVTADDEKVLLFTQFREFGELVVPYLADRFTTEVPFLHGGVSKAGRDAMVE 822

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  EG  P++     + G GLNL    N +V    WW+     Q  +R+      + G 
Sbjct: 823 AFQGEGGPPIMVLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDRVF-----RIGQ 876

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ++ V V  ++   T++E +   + +KS + +L
Sbjct: 877 RKNVQVRKMVCVGTLEERIDTMIASKSELAEL 908


>gi|116283949|gb|AAH16071.1| Smarca1 protein [Mus musculus]
          Length = 1032

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 596 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 640


>gi|115654057|ref|XP_001202164.1| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
 gi|115679178|ref|XP_790055.2| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
          Length = 335

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 42/230 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------ 44
            Y ++ + +  + + +     ++ S      +L N      +                  
Sbjct: 15  IYQQYVKAMMKECRMKTQGKVSTLSAITHLKKLCNHPALVYDKCVSSKDGFHDMLQNFPP 74

Query: 45  ---EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLA------RLQK----AF 88
               K  +     K++ L+ I+   + +++  +++  ++   L       RL+       
Sbjct: 75  GYNNKQLRPELSGKMQVLDYILAITKTSSSDKVVLVSNYTQTLDVFEQLCRLRGYLFVRL 134

Query: 89  PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++ K    +  +N    P  +      + G GLNL  G N LV F   W+     Q
Sbjct: 135 DGSMSIKKRAKVVDSFNNPNSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQ 193

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R+      + G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 194 AMARVW-----RDGQKKRCFIYRLLATGTIEEKIFQRQAHKKALSSCVVD 238


>gi|170087336|ref|XP_001874891.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
 gi|164650091|gb|EDR14332.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
          Length = 816

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-- 106
           L  I  +     +++  ++   L   +K                T+ K    + ++N+  
Sbjct: 583 LHQIKTQTTDKIVLI-SNYTQTLDLFEKLCRSKKYGFFRLDGSMTIVKRQKLVDQFNDPD 641

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +      + G G+NL  G N L+ F   W+    QQ + R+      + G K+  F
Sbjct: 642 GKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALARVW-----RDGQKKECF 695

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           VY  I+  TI+E + QR   K  +   +++  +    H
Sbjct: 696 VYRFISTGTIEEKIFQRQANKQALSSAVVDEKEDAERH 733


>gi|14028667|gb|AAK52453.1|AF325920_1 DNA-dependent ATPase SNF2L [Mus musculus]
          Length = 1064

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 418 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 477

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 478 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 537

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 538 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 596

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 597 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 641


>gi|78214026|ref|YP_382805.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78198485|gb|ABB36250.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 1065

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 24/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             +   +  Q+ N       E    +       K++ LE I+++        ++   F   
Sbjct: 860  LALLTRLKQICNHPALALSEGAVDDGFLGRSAKLQRLEEILDEVIEAGDRALLFTQFAEW 919

Query: 81   LARLQKAFPQ-----------GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
               L+    Q           G   ++    +  + E      L      + G GLNL  
Sbjct: 920  GHLLRAWMQQRWKSEVPFLHGGTRKNERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTR 979

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +     WW+     Q  +R       + G    V V+  I   +++E + + +R K
Sbjct: 980  ASH-VFHIDRWWNPAVENQATDR-----AYRIGQTNRVMVHKFITSGSVEEKIDRMIREK 1033

Query: 188  STIQDLLL 195
            S + + ++
Sbjct: 1034 SRLAEDVI 1041


>gi|193203249|ref|NP_001032980.2| hypothetical protein T23H2.3 [Caenorhabditis elegans]
 gi|163644490|gb|AAM15608.2|U80033_3 Hypothetical protein T23H2.3 [Caenorhabditis elegans]
          Length = 1001

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN 105
           ++ +  I+EK     +++   + S L  ++K             G+ L KD    +  +N
Sbjct: 829 LEVVREILEK--KEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFN 886

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      + G K+
Sbjct: 887 QEKGGAQVMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YRMGQKK 940

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            VF++ LI + TI++ V+     K  +   +L       +
Sbjct: 941 EVFIHRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKL 980


>gi|321465306|gb|EFX76308.1| RAD54, DNA repair and recombination protein [Daphnia pulex]
          Length = 748

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK-----AFPQGRT-----LDKDPCTIQEWN 105
           +  +  +++      I++  ++   L   +K     ++P  R      + K    ++ +N
Sbjct: 506 LDCILAMVKSTTNDKIVLISNYTQTLDLFEKLCRMRSYPCVRLDGSMSIKKRAKIVEHFN 565

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 566 DPASSDFVFLLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 619

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             F+Y L++  TI+E + QR   K  +   +++
Sbjct: 620 PCFIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 652


>gi|218753823|ref|ZP_03532619.1| helicase helZ [Mycobacterium tuberculosis GM 1503]
 gi|289762264|ref|ZP_06521642.1| helicase [Mycobacterium tuberculosis GM 1503]
 gi|289709770|gb|EFD73786.1| helicase [Mycobacterium tuberculosis GM 1503]
          Length = 559

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 326 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 385

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEW 104
            I+E+       ++    F      L                    G    +    +  +
Sbjct: 386 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 445

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+     Q  +R       + G +R
Sbjct: 446 QSGDGPPIFLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQRR 499

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 500 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 531


>gi|123123059|emb|CAM19307.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1062

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 596 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 640


>gi|156549903|ref|XP_001601964.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 899

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 22/160 (13%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
             K+K ++ I   I++ N   ++V+Y F   L  L+K                       
Sbjct: 635 SSKVKVVQAIFQAIKRTNEKVVLVSY-FTQTLDFLEKVCCTEGLQFCRLDGHTPAASRTK 693

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N       L      + G GLNL  G + L+ F   W+     Q + RI      
Sbjct: 694 LVDRFNSKDNSFCLFLLSAKAGGVGLNL-VGASRLILFDSDWNPANDAQAMARIW----- 747

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR+VF+Y L+   TI+E + QR  +K+ + + +++A
Sbjct: 748 RDGQKRSVFIYRLLTTGTIEEKIYQRQISKTGLSEAVVDA 787


>gi|123296349|emb|CAI26225.2| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1139

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFP 89
            A  +D+ +   +V    +  LE I +   +   ++   + S L          RL  A  
Sbjct: 958  AELFDDTRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATI 1016

Query: 90   QGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q 
Sbjct: 1017 DGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQA 1075

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1076 CDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1120


>gi|56611125|gb|AAH87733.1| Transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFP 89
            A  +D+ +   +V    +  LE I +   +   ++   + S L          RL  A  
Sbjct: 957  AELFDDTRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATI 1015

Query: 90   QGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q 
Sbjct: 1016 DGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQA 1074

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1075 CDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1119


>gi|254692909|ref|NP_001013044.2| transcription termination factor 2 [Mus musculus]
 gi|152031718|sp|Q5NC05|TTF2_MOUSE RecName: Full=Transcription termination factor 2; AltName: Full=RNA
            polymerase II termination factor; AltName:
            Full=Transcription release factor 2
 gi|66911227|gb|AAH96625.1| Transcription termination factor, RNA polymerase II [Mus musculus]
 gi|123294595|emb|CAM22070.1| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFP 89
            A  +D+ +   +V    +  LE I +   +   ++   + S L          RL  A  
Sbjct: 957  AELFDDTRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATI 1015

Query: 90   QGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q 
Sbjct: 1016 DGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQA 1074

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1075 CDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1119


>gi|149060085|gb|EDM10901.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 (predicted) [Rattus
           norvegicus]
          Length = 985

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 340 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 399

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+             
Sbjct: 400 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 459

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 460 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 518

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 519 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 563


>gi|74008351|ref|XP_865312.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 4 [Canis familiaris]
          Length = 1042

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|281202078|gb|EFA76283.1| RUN domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1467

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 25/178 (14%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGR- 92
             A     E+    V   K+  L   I +       A I++   + + L R+++ F + R 
Sbjct: 1269 SAGNVKSEQPDVMVPSTKLTLLMEQINETLSKEKGAKIVIFSQWTTMLDRIEEIFVENRW 1328

Query: 93   -------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +  +    ++ +  EG   ++     + G G+NL    N +     W
Sbjct: 1329 SESGKYERFDGKMSAKQKKAALENFQMEGGPVVMLISLKAGGVGINLTR-ANKVFLVDPW 1387

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W++    Q I+R+      + G  + V V  LI   +I+E +L+   TK  +   +L+
Sbjct: 1388 WNVAAENQAIDRL-----HRIGQTKPVTVKKLIITRSIEERILELQETKEVMTQAILD 1440


>gi|257075448|ref|ZP_05569809.1| helicase [Ferroplasma acidarmanus fer1]
          Length = 1015

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S   K  +L +       +   +    EK+  L  ++E+A  +    +V   +      
Sbjct: 805 LSTITKLKRLLDHPSLVSGDLDRRLDRSEKLVRLREMLEEAIDSNQKTLVFTQYTDAGKI 864

Query: 84  LQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
           +++   +              +      ++ + +   P +      + G G+NL    N 
Sbjct: 865 IKEEMLKKLGEEALYLNGSTPMSLRQNMVERFQDPDGPKIFIISVKAGGAGINLTAATN- 923

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R       + G  + V VY  I+  TI+E +   +  KS ++
Sbjct: 924 VIHFDRWWNPSVEDQATDR-----AYRIGQMKNVHVYKFISTGTIEEKIDDIIEGKSMLR 978

Query: 192 DLLLNA 197
           + ++ A
Sbjct: 979 EKIIGA 984


>gi|87300749|ref|ZP_01083591.1| SNF2 related domain:DEAD/DEAH box helicase:Helicase C-terminal
            [Synechococcus sp. WH 5701]
 gi|87284620|gb|EAQ76572.1| SNF2 related domain:DEAD/DEAH box helicase:Helicase C-terminal
            [Synechococcus sp. WH 5701]
          Length = 1037

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 26/215 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDE---K 55
            +K Y +   +    +    +   +        K  Q+ N      +E            K
Sbjct: 806  VKLYRRTVEDTLDAIARAPVGQKHGQVLGLLTKLKQVCNHPALMLKEGEVGAGFSARSAK 865

Query: 56   IKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAFP---QGRTLDKDPCTIQ 102
            ++ LE I+E+  A     ++   F             R  +  P      +  +    + 
Sbjct: 866  LQRLEEIVEEVIAAGDRALLFTQFAEWGHLLQTHLQQRFHQEVPFLYGSTSKGERQAMVD 925

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             + +      L      + G GLNL    + +     WW+     Q  +R       + G
Sbjct: 926  RFQDDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYRIG 979

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                V V+  I   +++E + + +R K+ + + ++
Sbjct: 980  QTNRVMVHKFITSGSVEEKIDRMIREKARLAEDIV 1014


>gi|62667352|ref|XP_229124.3| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1062

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+             
Sbjct: 477 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 536

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 537 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 596 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 640


>gi|255072403|ref|XP_002499876.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515138|gb|ACO61134.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2637

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 28/190 (14%)

Query: 27  SKTVKCLQLANGAVYY------DEEKHWKEVHDE--KIKALEVIIEKA--NAAPIIVAYH 76
           S  ++  +  N    +      ++    +E+ +   K+  L+ I+++       +++   
Sbjct: 794 SLLMQLRKCCNHPYLFAGTDVPEDGVPVEELVEASGKLAVLDRILKRLKDQGHRVVLFSQ 853

Query: 77  FNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLN 124
           F S L  L                     +    I  +N    P+        + G G+N
Sbjct: 854 FTSMLDILSDFLTLRGYQFARLDGSTNRVQRSIDIAAFNRPNSPMFAFLLSTRAGGLGVN 913

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   +  V +   W+ +   Q + R+      + G K+ V VY L+   T++E + QR 
Sbjct: 914 LQT-ADTCVLYDSDWNPQVDTQAMARV-----HRIGQKKPVHVYRLVTAGTVEERMQQRA 967

Query: 185 RTKSTIQDLL 194
             K  ++ ++
Sbjct: 968 EKKLFLEQMV 977


>gi|167629617|ref|YP_001680116.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592357|gb|ABZ84105.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
          Length = 1006

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 29/218 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGA--VYYDEEKHWKEVHDEKIKA 58
            Y    +     ++     A   A  +   +  QL N    +  + +         K++ 
Sbjct: 770 LYESVLQAAMEKIEESTGIARRGAILSTLTQLKQLCNHPTLLLKEGKASVLRGRSHKVER 829

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWN 105
           L  ++E+        +V   +      L++               G    +    I+ + 
Sbjct: 830 LVEMVEELRQEGERCLVFTQYVETGHLLKETLEAALGEEVLFLHGGTPASQREKMIERFQ 889

Query: 106 EGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +          +      + G GLNL    N +     WW+     Q  +R       + 
Sbjct: 890 QSDPSPGKGCGVFLLSLKAGGTGLNLT-AANHVFHVDRWWNPAVENQATDR-----AYRI 943

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V V+  I   T++E + + +  K  + + ++  
Sbjct: 944 GQSRNVHVHKFITLGTLEERIDEMIERKQGLSEEVIGG 981


>gi|302897485|ref|XP_003047621.1| hypothetical protein NECHADRAFT_72504 [Nectria haematococca mpVI
            77-13-4]
 gi|256728552|gb|EEU41908.1| hypothetical protein NECHADRAFT_72504 [Nectria haematococca mpVI
            77-13-4]
          Length = 1861

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ ++   KA    +++ +     +  +++             G T  +D 
Sbjct: 1580 VTDSGKLAKLDDLLFKLKAENHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDR 1639

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++    +I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1640 RDTVHDFQTRPEIFIFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1693

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1694 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1734


>gi|297599769|ref|NP_001047786.2| Os02g0689800 [Oryza sativa Japonica Group]
 gi|255671175|dbj|BAF09700.2| Os02g0689800 [Oryza sativa Japonica Group]
          Length = 1059

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
            ++   +    K++ L +++ +  +     ++       L  L++             G 
Sbjct: 84  PDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGS 143

Query: 93  TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  ++  T+ Q +N   K  L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 144 TQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 202

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 203 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 243


>gi|317126523|ref|YP_004100635.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
 gi|315590611|gb|ADU49908.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
          Length = 1043

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 28/212 (13%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI--KA 58
             Y     ++   ++G        N  +   K  Q+ N       ++        K+    
Sbjct: 813  LYQTIVDDMMARIEGSEGIERRGNVLAAMAKLKQVCNHPAQVLHDRSAIGSRSGKVIRLE 872

Query: 59   LEVIIEKANAAPIIVA---------------YHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
              +    A    ++                   F++D+A L    P+ R   +D    Q 
Sbjct: 873  ELLEEILAEGDRVLCFTQYTEFAEMLVPHLSARFDTDVAYLHGGTPKKR---RDELVTQF 929

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +G  P+      + G GLNL    N ++    WW+     Q  +R       + G +R
Sbjct: 930  QGDGGAPIFLLSLKAGGTGLNLT-AANHVIHLDRWWNPAVENQATDR-----AYRIGQQR 983

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V   +   T++E + Q +  K  + +L++
Sbjct: 984  RVQVRKFVCTGTLEEKIDQMIEEKLALANLVV 1015


>gi|328867774|gb|EGG16155.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 2377

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L+     + ++   + I +      +CG G+NL    + ++FF   W+    +
Sbjct: 2059 RLDGSSKLEDRRDLVDDFQSDQSIFVFLLSTRACGIGINLT-AADTVIFFDSDWNPTMDE 2117

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q ++R       + G +R V VY L+ + T++E V++R + K  IQ +++   K E
Sbjct: 2118 QAMDRC-----HRLGQQRPVTVYRLVTKGTVEERVIKRAKQKHQIQSIVIAGGKFE 2168


>gi|72012428|ref|XP_783733.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
 gi|115973296|ref|XP_001183354.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
          Length = 834

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 42/230 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------ 44
            Y ++ + +  + + +     ++ S      +L N      +                  
Sbjct: 514 IYQQYVKAMMKECRMKTQGKVSTLSAITHLKKLCNHPALVYDKCVSSKDGFHDMLQNFPP 573

Query: 45  ---EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLA------RLQK----AF 88
               K  +     K++ L+ I+   + +++  +++  ++   L       RL+       
Sbjct: 574 GYNNKQLRPELSGKMQVLDYILAITKTSSSDKVVLVSNYTQTLDVFEQLCRLRGYLFVRL 633

Query: 89  PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++ K    +  +N    P  +      + G GLNL  G N LV F   W+     Q
Sbjct: 634 DGSMSIKKRAKVVDSFNNPNSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQ 692

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R+      + G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 693 AMARVW-----RDGQKKRCFIYRLLATGTIEEKIFQRQAHKKALSSCVVD 737


>gi|294056083|ref|YP_003549741.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615416|gb|ADE55571.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 1133

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 28/216 (12%)

Query: 6    KFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KAL 59
            + + E+        E      + +  ++  Q+    V  +           K       L
Sbjct: 915  EVREEIAAAYDDQPEQQAGIVALAAILRLRQV---CVSPELLGKQLPEPAPKFVYMGDRL 971

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKI 109
            E +  +A     +V   F   L +++                  + +    ++ +  G  
Sbjct: 972  EEL--QAEGNAALVFSQFIGGLDQMEAIARERGVDYLRMDGRTPVGQRREIVRSFQSGDG 1029

Query: 110  P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P   F    + G GLNL    N +     WW+     Q  +R       + G  R+VFV 
Sbjct: 1030 PSFFFISLKTGGVGLNLTR-ANYVFHLDPWWNPAVENQASDR-----AHRIGQTRSVFVQ 1083

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             LI Q++I+  +L+    K+ +   L++   + T  
Sbjct: 1084 RLIMQHSIEARMLELKARKAELFRQLVDEPGRRTAK 1119


>gi|218289771|ref|ZP_03493971.1| Non-specific serine/threonine protein kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240062|gb|EED07247.1| Non-specific serine/threonine protein kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 949

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 25/211 (11%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y     +++  + +G +  A   A  T  ++  Q+ +                 K+++
Sbjct: 713 AMYQALVDQMFAQIARGPSAMARRGAILTTLLRLKQVCDHPALI-SGGRPLAKRSGKLRS 771

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L   +          +V   F      L  A              G +       ++++ 
Sbjct: 772 LLDRLRVVVDGGEAALVFTQFREMGEMLCAAVEDELGFRPAFLHGGMSAKARGEIVEQYQ 831

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            G++  P+L     + G GLNL    N +  +  WW+     Q  +R       + G  R
Sbjct: 832 AGRMESPVLILSLRAGGVGLNLTR-ANHVFHYDRWWNPAVEDQATDR-----AYRIGQLR 885

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V+ +I   T++E + + LR K  + D++
Sbjct: 886 GVEVHKMICVGTLEERIDEMLRAKRALSDVV 916


>gi|74008353|ref|XP_865330.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 5 [Canis familiaris]
          Length = 1036

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|50290001|ref|XP_447432.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526742|emb|CAG60369.1| unnamed protein product [Candida glabrata]
          Length = 942

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +  +     K   LE     I+  +   I++  ++   L  +++               
Sbjct: 690 SRDVQTQFSGKFAILERFLHKIKTESDDKIVLISNYTQTLDLIERMCRNRHYASVRLDGT 749

Query: 92  RTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + 
Sbjct: 750 MSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALA 808

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G K+  F+Y  I+  TI+E + QR   K ++   +++A
Sbjct: 809 RVW-----RDGQKKDCFIYRFISTGTIEEKIYQRQSMKMSLSSCVVDA 851


>gi|262199842|ref|YP_003271051.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262083189|gb|ACY19158.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 1121

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 80/214 (37%), Gaps = 24/214 (11%)

Query: 1    MKQYHKFQ----RELYCDLQGEN--IEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHD 53
            +K Y        REL   L+     +   +  +      Q+    A+       + +   
Sbjct: 893  VKLYRDAVESRGRELLAALRDPEQPVPYMHVFALLTLLKQICCHPALVAGTPAAYGDYRS 952

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQ 102
            +K +  + ++ ++  +   ++V   F   L   ++             GRT  +     +
Sbjct: 953  DKWELAKELVRESLDSGQKVVVYSQFLGMLEIFERHLRALGIGYAKLTGRTRKRGEVVAR 1012

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              ++ +  +  A   + G G++L    ++++ +  WW+     Q  +R+      + G  
Sbjct: 1013 FQDDPECRVFLASLTAGGVGIDL-VAASVVLHYDRWWNAAREDQATDRV-----HRMGQT 1066

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V V  L+ + T++E +   +  K  + + ++ 
Sbjct: 1067 RGVQVIKLVTEGTLEEKIAALIAKKRQLMERVVQ 1100


>gi|238814383|ref|NP_001154953.1| RAD54-like [Nasonia vitripennis]
          Length = 749

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL---ARL--QKAFPQGRT-----LDKDPCTIQEWN 105
           +  L   I+      I++  ++   L    RL  ++ +   R      + K    +  +N
Sbjct: 508 LDCLLAFIKSTTTDKIVLVSNYTQTLDLFERLCAKRKYKYVRLDGTMSIKKRAKVVDNFN 567

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 568 NPDSGDFIFMLSSKAGGCGLNL-VGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 621

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             FVY  +   TI+E + QR   K  +   +++
Sbjct: 622 PCFVYRFLCTGTIEEKIFQRQAHKKALSSTVVD 654


>gi|71425488|ref|XP_813116.1| helicase [Trypanosoma cruzi strain CL Brener]
 gi|70877970|gb|EAN91265.1| helicase, putative [Trypanosoma cruzi]
          Length = 1191

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ L+  +++       +++   F   L  L++                  ++    + 
Sbjct: 814 KLQFLQHALKQLRREGHRMLIFTQFVHMLNILERFLAIIGIPYLRIDGSTQAERRQAFVD 873

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE   I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 874 RFNEDDRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 927

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V +Y LI+++T++E +LQ+ R +  + ++++  
Sbjct: 928 TKPVTIYRLISEHTVEENILQKARERKKLNNVVIRG 963


>gi|26326731|dbj|BAC27109.1| unnamed protein product [Mus musculus]
          Length = 1046

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K           +  N    +D     
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMHLRKCCNHPYLFDGAEPG 476

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 596 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 640


>gi|296418119|ref|XP_002838689.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634650|emb|CAZ82880.1| unnamed protein product [Tuber melanosporum]
          Length = 404

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
            K+ AL   + KA    +++ +     +   ++                 L+     +  
Sbjct: 126 AKLDALLTEL-KAGGHRVLLYFQMTKMMDLCEEYLTYRHHRYLRLDGSSKLEDRRDMVSA 184

Query: 104 WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           W    +I +      + G G+NL    + ++F+   W+     Q ++R       + G  
Sbjct: 185 WQTTPEIFVFILSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRLGQT 238

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R V VY LI + TI+E +  R + K  +Q +++  
Sbjct: 239 RQVTVYRLITRGTIEERIRTRAKQKEEVQRVVIQG 273


>gi|154338237|ref|XP_001565343.1| DNA repair and recombination protein RAD54 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062392|emb|CAM42253.1| putative DNA repair and recombination protein RAD54 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1126

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEG 107
            L+ + E      +++  +F   L          R+      G T + K    +  +N  
Sbjct: 800 VLDELRENGEHDKLVIVSNFTQTLDIIAALCNSKRIAYFQLDGSTPIKKRQQLVDYFNVP 859

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 860 DSQEVVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 913

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  TI+E + QR  +K  +   +++
Sbjct: 914 FIYRLLSTGTIEEKIYQRQVSKQGLSANVVD 944


>gi|67483974|ref|XP_657207.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474451|gb|EAL51818.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 955

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 20/166 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +   K+  +E ++EK   N   I++       L  +         +     G+T  +D  
Sbjct: 404 LSSAKMIVMEKLVEKHLKNNGKILIFSQMTRMLDIIDDYLVFKDIEHYRIDGQTQQEDRV 463

Query: 99  CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+++N   GK+ +      S G G+NLQ   + ++ +   W+ +   Q ++R      
Sbjct: 464 EQIKDFNDPNGKVSIFLLSTRSGGLGINLQ-SADTVILYDSDWNPQSDIQAMDR-----A 517

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + G  + V VY LI + T ++ +++    K  +  L++ + K  T
Sbjct: 518 HRIGQTKPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGKTAT 563


>gi|313230046|emb|CBY07750.1| unnamed protein product [Oikopleura dioica]
          Length = 1656

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 48/233 (20%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGA-------------VYYDEEKHWKEVHD 53
             Q+ LY +     ++  N+        +L N               +  D +++   + D
Sbjct: 1361 LQKRLYEEFTRSKLKKRNATLAIQYLQKLCNHPTLVLTSAHPDYQSIMTDLDRNGSSIRD 1420

Query: 54   ----EKIKALEVIIEKAN----------AAPIIVAYHFNSDLARLQK------------- 86
                 KIKAL+ ++ +                ++     S L  +++             
Sbjct: 1421 IEHAPKIKALKQLLTECGIGQRNGSVVSEHRALIFCQHKSMLDIIERDLFKSNQLPSVSF 1480

Query: 87   -AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                           +  +N +  I +L       G GLNL  G ++++F    W+ +  
Sbjct: 1481 SRLDGSVPAGARHGIVSRFNRDPTIDVLLLTTKVGGLGLNLT-GADVVIFVEHDWNPQMD 1539

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q ++R       + G K+ V VY LI +NT++E ++   + K +I + L++ 
Sbjct: 1540 LQAMDR-----AHRIGQKKTVNVYRLITRNTVEEKIMGLQKFKLSIANSLVSG 1587


>gi|301166647|emb|CBW26223.1| putative helicase [Bacteriovorax marinus SJ]
          Length = 1063

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 27/190 (14%)

Query: 21   EAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
               +     ++  Q A        +Y D E    E+  EK+K +       +    +V  
Sbjct: 866  SKVHILEALLRLRQAACHPGLINPLYLDSESAKLEILVEKLKVI-----AKSGEKALVFS 920

Query: 76   HFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNL 125
             F   L  +Q              G+T +++   I E+ E            + G GLNL
Sbjct: 921  QFTQFLKIVQNRLKAEGIEFSYLDGQTRNREE-VIDEFKEVPDKTAFLISLKAGGFGLNL 979

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                        WW+     Q I+RI      + G K  V+   L+++ T++E +++  +
Sbjct: 980  TQ-AKYCFLLDPWWNPAVEGQAIDRI-----HRIGQKSEVYAIKLLSEGTVEEKIIEMQK 1033

Query: 186  TKSTIQDLLL 195
             K  + D L 
Sbjct: 1034 RKKKLVDNLF 1043


>gi|297795067|ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311253|gb|EFH41677.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTL 94
             D  K+WKE     E +K LE I +  +    IV   + S L  L     +K F   R  
Sbjct: 1127 VDVVKNWKESSKVSELLKCLEKIQKSGSGEKSIVFSQWTSFLDLLEIPLRRKGFEFLRFD 1186

Query: 95   DK-----DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             K         ++E+NE K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 1187 GKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLT-AASSVFLMDPWWNPAVEEQAI 1245

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G KR VFV   I ++T++E + Q    K 
Sbjct: 1246 MRI-----HRIGQKRTVFVRRFIVKDTVEERMQQVQARKQ 1280


>gi|74008363|ref|XP_865407.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 9 [Canis familiaris]
          Length = 1053

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 405 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 464

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 465 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 524

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 525 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 583

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 584 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 628


>gi|74008349|ref|XP_865296.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 3 [Canis familiaris]
          Length = 1058

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|74008355|ref|XP_865346.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 6 [Canis familiaris]
          Length = 1052

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 407 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 466

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 467 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 526

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 527 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 585

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 586 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 630


>gi|255946938|ref|XP_002564236.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591253|emb|CAP97480.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           + K W       +  +   I +     I++  ++   L   +K                 
Sbjct: 565 DIKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMN 624

Query: 94  LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    +  +N   G+  +      + G GLNL  G N LV F   W+    QQ + R+
Sbjct: 625 IKKRTKLVDTFNNPDGQEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQQALARV 683

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G K+  FVY  IA  +I+E + QR   K ++   ++++ +    H
Sbjct: 684 W-----RDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERH 731


>gi|158293531|ref|XP_557901.3| AGAP008748-PA [Anopheles gambiae str. PEST]
 gi|157016752|gb|EAL40287.3| AGAP008748-PA [Anopheles gambiae str. PEST]
          Length = 789

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 18/161 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  +   I+      I++  ++   L   +K                T+ K    + ++N
Sbjct: 490 LDCMLASIKTNTTDKIVLVSNYTQTLDLFEKLCRKRGYGYVRLDGTMTIKKRGKVVDQFN 549

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G GLNL  G N LV F   W+    +Q + R+      + G K+
Sbjct: 550 QPDSADFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKK 603

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             F+Y L+A  TI+E + QR   K  +   +++  +    H
Sbjct: 604 PCFIYRLLATGTIEEKIFQRQTHKKALSTTVVDNAEDGERH 644


>gi|145342259|ref|XP_001416174.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
 gi|144576399|gb|ABO94467.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
          Length = 1053

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 19/185 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
           +        +       +  +K   +    K++ L  ++ K   +    ++       L 
Sbjct: 782 ALGLMAPIRKFVARQSMFVPDKRLVQFDCGKLQILATLLRKLKQDGHKALIFTQMTKMLD 841

Query: 83  RLQ---------KAFPQGRT-LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
            L+              G T  ++    +Q +N  K + +      S G G+NL  G + 
Sbjct: 842 VLEAFLNLHGYTYCRLDGSTGAEQRQLLMQRFNSDKRLFVFILSTRSGGFGINLT-GADT 900

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+    QQ  +R       + G  R V +Y LI++ TI+E +LQ+   K  + 
Sbjct: 901 VIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISEGTIEESILQKAVQKRELD 955

Query: 192 DLLLN 196
           ++ + 
Sbjct: 956 NMAIQ 960


>gi|325116597|emb|CBZ52150.1| putative SNF2 family N-terminal domain-containing protein [Neospora
            caninum Liverpool]
          Length = 2973

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
              K   +    K+  L  ++   +A+    ++   F+  L  L+                
Sbjct: 2589 PHKQTLQDDCGKLIILAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDGS 2648

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D+    +  +N   +I L  +   + G GLNL  G + ++F+   W+    +Q ++R
Sbjct: 2649 TKVDQRQRVVTRFNASPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPAMDRQAMDR 2707

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2708 C-----HRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2748


>gi|290982366|ref|XP_002673901.1| predicted protein [Naegleria gruberi]
 gi|284087488|gb|EFC41157.1| predicted protein [Naegleria gruberi]
          Length = 873

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 22/175 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           +++K +   +  K+  L+ ++ +       +++  +F S L  ++K              
Sbjct: 592 NDKKEYHSQYSGKLLVLDNLLREIREVGDRVVIVSNFKSILNEIEKLCKIRDYPLSRLDG 651

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +K    +  +N  K    +      + G GLNL  G N L+     W+    +Q +
Sbjct: 652 STQSEKRMVIVNSFNSPKSNDFIFLLSSKAGGCGLNL-IGANRLIMIDPDWNPSNDEQAM 710

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKE 201
            R+      + G K++VF+Y +I   TI+E + QR   K+ +    L+  +LK +
Sbjct: 711 ARVW-----RDGQKKSVFIYRMIGCGTIEEKIFQRQIVKTGLSKSTLDEKSLKSQ 760


>gi|212531233|ref|XP_002145773.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Penicillium
            marneffei ATCC 18224]
 gi|210071137|gb|EEA25226.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1177

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 23/167 (13%)

Query: 45   EKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
            EK W  +   KI+     LE I E       I+   F S L  L     ++ +   R   
Sbjct: 997  EKKW--ITSAKIEKAIEILEGIKESGKGEKTIIFSQFTSLLDMLEVPINRRGWKYRRYDG 1054

Query: 93   ---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +++   ++  ++    ++     +   GLNL    + ++ F  +W+    +Q I+
Sbjct: 1055 SMNPRERNESVLEFTDKPDCDIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAID 1113

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R       + G  R V V+ ++ + T+++ +L+    K  + +  L+
Sbjct: 1114 R-----AHRLGQTRPVQVHRILVEKTVEDRILELQDKKREVIEGALD 1155


>gi|326925324|ref|XP_003208867.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Meleagris gallopavo]
          Length = 792

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 47/233 (20%)

Query: 3   QYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANG-AVYYD---------------- 43
            Y  F ++     +L+   I   +S S      +L N  A+ YD                
Sbjct: 471 LYKNFLKQAKPVEELKEGKIN-VSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF 529

Query: 44  ----EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK--------- 86
                 K  +     K+  L+ I+      +N   ++V  ++   L   +K         
Sbjct: 530 PAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLV-SNYTQTLDLFEKLCRNRRYLY 588

Query: 87  -AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 589 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 647

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q + R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 648 DEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 695


>gi|118094595|ref|XP_422447.2| PREDICTED: similar to putative recombination factor GdRad54 [Gallus
           gallus]
          Length = 804

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 47/233 (20%)

Query: 3   QYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANG-AVYYD---------------- 43
            Y  F ++     +L+   I   +S S      +L N  A+ YD                
Sbjct: 483 LYKNFLKQAKPVEELKEGKIN-VSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF 541

Query: 44  ----EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK--------- 86
                 K  +     K+  L+ I+      +N   ++V  ++   L   +K         
Sbjct: 542 PAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLV-SNYTQTLDLFEKLCRNRRYLY 600

Query: 87  -AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 601 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 659

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q + R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 660 DEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 707


>gi|51316190|sp|O12944|RAD54_CHICK RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Putative recombination factor GdRad54;
           AltName: Full=RAD54 homolog
 gi|1905887|gb|AAB54115.1| putative recombination factor GdRad54 [Gallus gallus]
          Length = 733

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 47/233 (20%)

Query: 3   QYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANG-AVYYD---------------- 43
            Y  F ++     +L+   I   +S S      +L N  A+ YD                
Sbjct: 412 LYKNFLKQAKPVEELKEGKIN-VSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF 470

Query: 44  ----EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK--------- 86
                 K  +     K+  L+ I+      +N   ++V  ++   L   +K         
Sbjct: 471 PAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLV-SNYTQTLDLFEKLCRNRRYLY 529

Query: 87  -AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 530 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 588

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q + R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 589 DEQAMARVW-----RDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 636


>gi|312383263|gb|EFR28419.1| hypothetical protein AND_03670 [Anopheles darlingi]
          Length = 814

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG 107
            L  I    N   ++V  ++   L   +K                T+ K    + ++N  
Sbjct: 519 MLASIKTNTNDKIVLV-SNYTQTLDLFEKLCRKRGYGYVRLDGTMTIKKRGKVVDQFNSP 577

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N LV F   W+    +Q + R+      + G K+  
Sbjct: 578 DSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKPC 631

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 632 FIYRLLATGSIEEKIFQRQTHKKALSTTVVD 662


>gi|156040810|ref|XP_001587391.1| hypothetical protein SS1G_11383 [Sclerotinia sclerotiorum 1980]
 gi|154695767|gb|EDN95505.1| hypothetical protein SS1G_11383 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1301

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 23/169 (13%)

Query: 46   KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRT 93
            K+W+     K+     ++E  +      I+   F + L  LQ          + +     
Sbjct: 1125 KNWQ--SSAKVDKCVELLERFQTEGEKTIIFSQFVTFLDLLQVPIGEKGWKCERYDGSIN 1182

Query: 94   LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    I+++ N+    ++     +   GLNL    + ++    +W+     Q ++R  
Sbjct: 1183 AKRRDDAIKQFTNKPDCNIMLISLKAGNAGLNL-VAASRVIILDPFWNPFIEMQAVDR-- 1239

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALK 199
                 + G  + V V+ ++ Q+T+++ ++   + K  + +  L+  A+K
Sbjct: 1240 ---AHRIGQMKPVQVHRILIQDTVEDRIMALQKQKKELVESALDEGAMK 1285


>gi|74008375|ref|XP_865514.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 15 [Canis familiaris]
          Length = 1040

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|75764646|ref|ZP_00744080.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74487868|gb|EAO51650.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 340

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 156 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGS------------YNEHKLQYIKD 203

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IE  N   II+ Y+F  +   L     +   T++ D   +  + +    +      +  
Sbjct: 204 LIESTNDR-IIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGA 262

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +V+F+L    E  +Q  +R       + G KR  F YYL+   +I+  +
Sbjct: 263 MGLNLQK-ANKIVYFTLTDKSELFEQSKKRTL-----RIGQKRLGFYYYLLTDGSIEWRM 316

Query: 181 LQRLRTKSTIQDLLLN 196
           L  L+ +    D L  
Sbjct: 317 LDVLKERRDYTDALFE 332


>gi|119357048|ref|YP_911692.1| SNF2-related protein [Chlorobium phaeobacteroides DSM 266]
 gi|119354397|gb|ABL65268.1| SNF2-related protein [Chlorobium phaeobacteroides DSM 266]
          Length = 1007

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 34/223 (15%)

Query: 1   MKQYHKFQRE-------LYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKH 47
           MKQY    RE       +  +LQ +   A          +  VK  Q+ N  V +  +  
Sbjct: 763 MKQYCTLTREQASLYKAVIDELQEKIETAEGIDRRGLVLALLVKLKQVCNHPVQFLGDNS 822

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA----------FPQGRT-L 94
             E    K++ L  ++ +        +V   F      LQ+           F  G    
Sbjct: 823 SVEHRSGKLQRLTELLSEIRECGQRTLVFTQFMEMGKILQRYLQELFGEEVFFLHGSLSR 882

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K    I  + +G+    +      + G  LNL    N +V +  WW+     Q  +R  
Sbjct: 883 KKRDAMIDAFQQGEHAPHIFILSLKAGGSCLNLTN-ANHVVHYDRWWNPAVENQATDR-- 939

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G KR V V+  I   T++E + + +  K  +   +L
Sbjct: 940 ---AFRIGQKRNVEVHKFITAGTLEERIDEMIDKKRAVSGSVL 979


>gi|238878261|gb|EEQ41899.1| DNA repair and recombination protein RAD54 [Candida albicans WO-1]
          Length = 848

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK--AFPQGRTL----- 94
            +  +     K   LE  ++K N      I++  ++   L  ++K   + +   L     
Sbjct: 596 NREIQTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGT 655

Query: 95  ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N+   P  +      + G G+NL  G N LV     W+    QQ + 
Sbjct: 656 MNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQQALA 714

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 715 RVW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 756


>gi|68467321|ref|XP_722322.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
 gi|68467550|ref|XP_722208.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444164|gb|EAL03441.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444289|gb|EAL03565.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
          Length = 848

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK--AFPQGRTL----- 94
            +  +     K   LE  ++K N      I++  ++   L  ++K   + +   L     
Sbjct: 596 NREIQTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGT 655

Query: 95  ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    + ++N+   P  +      + G G+NL  G N LV     W+    QQ + 
Sbjct: 656 MNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQQALA 714

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 715 RVW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 756


>gi|331238296|ref|XP_003331803.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309310793|gb|EFP87384.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1611

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 20/171 (11%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK 96
             V+  K+  L+ ++ +  A    +++             + S    + +        ++
Sbjct: 648 VVVNSGKMILLDKLLTRLKAEGHRVLIFSQMVRMLDIMSDYMSYRGYIFQRLDGTVPSEE 707

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N    P         + G G+NL    + ++ F   W+ +   Q + R    
Sbjct: 708 RRKAIGHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR---- 762

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G K  V VY L+ ++T++E VL+R + K  ++  ++N +     HV
Sbjct: 763 -AHRIGQKNHVNVYRLVTKDTVEEDVLERAKRKMILEYAIINQMDTSGKHV 812


>gi|115921268|ref|XP_787494.2| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115974812|ref|XP_001181201.1| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 629

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 23/170 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAP-----IIVAYHFNSDLARLQK----------AFP 89
           E      H  K+  L  ++   +A P     +++  ++   L  LQ              
Sbjct: 403 EGRPLLAHCGKLCVLSEMLRAMHADPTRRERLVLVSNYTQTLDILQALCSIEGYQFCRLD 462

Query: 90  QGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 K    ++ +N    K  +      + G GLNL  G + L+ + + W+     Q 
Sbjct: 463 GSTPTAKRQSIVEHFNSSYAKETIFLLSSKAGGVGLNL-IGASRLLLYDIDWNPANDLQA 521

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R+      + G K+ V++Y LI   TI+E + QR  +K ++   +++A
Sbjct: 522 MARVW-----RDGQKKTVYIYRLITAGTIEEKIYQRQISKQSLSGAVVDA 566


>gi|328863054|gb|EGG12154.1| hypothetical protein MELLADRAFT_76598 [Melampsora larici-populina
           98AG31]
          Length = 823

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----- 92
           G    D     +     K+  LE I  +     +++  +F   L  ++K   + R     
Sbjct: 569 GYTSKDSRAPARPELSGKMVVLERIRTQTTDKIVLI-SNFTQTLDVMEKMCRERRWGCLR 627

Query: 93  -----TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 + K    +  +N  EGK  +      + G G+NL  G N L+ F   W+    Q
Sbjct: 628 LDGTMQITKRQKLVDRFNNPEGKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPASDQ 686

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q + R+      + G K+  FVY  I   +++E V QR   K  +   +++
Sbjct: 687 QALARVW-----RDGQKKECFVYRFILTGSVEEKVFQRQSQKMKLSASVVD 732


>gi|301766464|ref|XP_002918637.1| PREDICTED: probable global transcription activator SNF2L1-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 1042

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|74008381|ref|XP_865569.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 18 [Canis familiaris]
          Length = 1048

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|166362977|ref|YP_001655250.1| SNF2 helicase-like protein [Microcystis aeruginosa NIES-843]
 gi|166085350|dbj|BAG00058.1| SNF2 helicase homolog [Microcystis aeruginosa NIES-843]
          Length = 1020

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 28/216 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANG-AVYYDEEKHWKEVHDEKI 56
           + Y +        ++   I+         +  ++  Q+ N  A +  E          K+
Sbjct: 782 QLYQQLVETTLQKIE--EIQGIQKHGLILTLLMQLKQICNHPAHFLKENSLETSQRSGKL 839

Query: 57  KALEVIIEK--ANAAPIIVAYHF--------NSDLARLQK--AFPQGRTLDKDP-CTIQE 103
             LE ++E+  A     ++   F             +L +   F  G T  KD    I+ 
Sbjct: 840 LRLEAMVEEVIAEGDRALIFTQFAEWGKLLQTHLQKKLAEEILFLSGSTKAKDRVEMIER 899

Query: 104 W-NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + N+ + P +      + G GLNL    N +     WW+     Q  +R       + G 
Sbjct: 900 FQNDPQGPKIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQ 953

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           KR V V+  I   T++E + + + +K  + +  ++A
Sbjct: 954 KRNVQVHKFICTGTLEERINEMIESKKQLAEQTVDA 989


>gi|227832859|ref|YP_002834566.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453875|gb|ACP32628.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1064

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 74/188 (39%), Gaps = 24/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEKA--NAAPIIVAYHFNS 79
             +   +  Q+ N   ++  +     +       K++ L  II++A  ++   ++   + +
Sbjct: 857  LASLTRIKQICNHPAHFLADGSPVTIKGKHRSGKVEELMRIIDQAIESSERALIFTQYKA 916

Query: 80   DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQY 127
                LQ    +           G + ++    ++E+      P++     + G GLNL  
Sbjct: 917  FGDVLQPYLSEQLGCEIPFFHGGVSKNRRDQMVEEFQAEDGAPVMLLSLKAGGTGLNLT- 975

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +I+V    WW+     Q  +R       + G +R V VY +I   T++E +   L  K
Sbjct: 976  AASIVVHMDRWWNPAVENQATDR-----AFRIGQQRNVQVYKMITAGTLEESIQDILDGK 1030

Query: 188  STIQDLLL 195
            + +   ++
Sbjct: 1031 TQLAGAVV 1038


>gi|74008369|ref|XP_865464.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 12 [Canis familiaris]
          Length = 1040

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|74008371|ref|XP_865480.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 13 [Canis familiaris]
          Length = 1062

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|260434360|ref|ZP_05788330.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
            8109]
 gi|260412234|gb|EEX05530.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
            8109]
          Length = 1065

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEK--ANAAPIIVAYHFN-- 78
             +   +  Q+ N       E    +       K++ LE I+++        ++   F   
Sbjct: 860  LALLTRLKQICNHPALAMSEGAVDDGFLGRSAKLQRLEEILDEVIEAGDRALLFTQFAEW 919

Query: 79   -SDLAR-LQKAFP-------QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
               L   +Q+ +         G    +    +  + E      L      + G GLNL  
Sbjct: 920  GHLLQAWMQQRWKSEVPFLHGGTRKSERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTR 979

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +     WW+     Q  +R       + G    V V+  I   +++E + + +R K
Sbjct: 980  ASH-VFHIDRWWNPAVENQATDR-----AYRIGQTNRVMVHKFITSGSVEEKIDRMIREK 1033

Query: 188  STIQDLLL 195
            S + + ++
Sbjct: 1034 SRLAEDVI 1041


>gi|19113394|ref|NP_596602.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|74676047|sp|O60177|YG42_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C23E6.02
 gi|3116120|emb|CAA18870.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 1040

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLAR------- 83
             Q+  G   + + KHW      ++ + A++ II+K     I++   F S L         
Sbjct: 848  RQM--GMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQ 905

Query: 84   --LQKAFPQG--RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              ++     G   T +++   I    +  + +L     +   GLNL    ++++    +W
Sbjct: 906  EGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIIL-DPFW 964

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +    +Q ++R       + G  + V +  ++  NTI+E VL     K  + D  L
Sbjct: 965  NPYIEEQAVDR-----AHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL 1015


>gi|298254459|ref|ZP_06978045.1| SNF2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 146

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 80  DLARLQKAFPQ---------GRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGG 129
           D  ++++  P          G T  K+   + + +N+G+         + G GLNL  G 
Sbjct: 2   DFEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLT-GA 60

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++   LWW+     Q I R       + G +  V VY L+ + TI+E + +    K  
Sbjct: 61  DTVILVDLWWNPAVEAQAIGR-----AHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKH 115

Query: 190 IQDLLLNALKKET 202
           +   +L+  +   
Sbjct: 116 LVSQVLDGTESRG 128


>gi|195550742|ref|XP_002076092.1| GD12001 [Drosophila simulans]
 gi|194201741|gb|EDX15317.1| GD12001 [Drosophila simulans]
          Length = 783

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 506 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 564

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 565 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 618

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 619 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 649


>gi|195342153|ref|XP_002037666.1| GM18177 [Drosophila sechellia]
 gi|194132516|gb|EDW54084.1| GM18177 [Drosophila sechellia]
          Length = 717

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 440 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 498

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 499 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 552

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 553 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 583


>gi|170041242|ref|XP_001848380.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167864826|gb|EDS28209.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 787

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  +   I+      I++  ++   L   +K                T+ K    + E+N
Sbjct: 489 LDCMLASIKMNTNDKIVLVSNYTQTLDLFEKLCRKRGYGYVRLDGTMTIKKRGKVVDEFN 548

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G GLNL  G N LV F   W+    +Q + R+      + G K+
Sbjct: 549 KPDSKEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKK 602

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             F+Y L+A  +I+E + QR   K  + + +++
Sbjct: 603 PCFIYRLLATGSIEEKIFQRQTHKKALSNTVVD 635


>gi|3329473|gb|AAC26857.1| RAD54 DNA repair protein [Drosophila melanogaster]
          Length = 628

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 351 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 409

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 410 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 463

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 464 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 494


>gi|27819922|gb|AAL39744.2| LD35220p [Drosophila melanogaster]
          Length = 788

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 511 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 569

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 570 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 623

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 624 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 654


>gi|17136368|ref|NP_476661.1| okra [Drosophila melanogaster]
 gi|74960637|sp|O76460|RAD54_DROME RecName: Full=DNA repair and recombination protein RAD54-like;
           Short=DmRAD54; AltName: Full=Protein okra; AltName:
           Full=RAD54 DNA repair protein
 gi|3264618|gb|AAC24577.1| Rad54 homolog OKR [Drosophila melanogaster]
 gi|7295868|gb|AAF51168.1| okra [Drosophila melanogaster]
 gi|220947310|gb|ACL86198.1| okr-PA [synthetic construct]
 gi|220956782|gb|ACL90934.1| okr-PA [synthetic construct]
          Length = 784

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 507 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 565

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 566 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 619

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 620 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|1765914|emb|CAA71278.1| RAD54 [Drosophila melanogaster]
          Length = 784

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 507 MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 565

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 566 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 619

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 620 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|242772478|ref|XP_002478043.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218721662|gb|EED21080.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1146

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 23/167 (13%)

Query: 45   EKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
            EK+W  +   KI+     LE I +  +    I+   F S L  L     ++ +   R   
Sbjct: 966  EKNW--MTSAKIEKAIEILEEIKDSGSGEKTIIFSQFTSLLDLLEVPINRRGWKYRRYDG 1023

Query: 93   ---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 D++   ++  +  +  ++     +   GLNL    + ++ F  +W+    +Q I+
Sbjct: 1024 SMNPRDRNESVLEFTDNPECDIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAID 1082

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R       + G  R V V+ ++ + T+++ +L     K  + +  L+
Sbjct: 1083 R-----AHRLGQTRPVQVHRVLVEKTVEDRILALQEEKREVIEGALD 1124


>gi|68536447|ref|YP_251152.1| putative DNA/RNA helicase [Corynebacterium jeikeium K411]
 gi|68264046|emb|CAI37534.1| putative DNA/RNA helicase [Corynebacterium jeikeium K411]
          Length = 1023

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y  F +++     L G    A N     VK  Q+ N   ++  +             K
Sbjct: 785 ALYETFIKDMEMRLQLPGGKRRA-NILGALVKIKQICNHPAHFAGDGSGILADGKHRSAK 843

Query: 56  IKALEVIIEKA--NAAPIIVAYHF----NSDLARLQKAFP-------QGRTLDKDPCTIQ 102
           I+ +  I ++A      +++   F          LQ  F         G +  K    ++
Sbjct: 844 IERIFEITDQALEQGKKVLMFTQFPTFGKMLAPELQSTFGVEVPVLHGGLSRAKRTQMVR 903

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++      P++     + G G+ L    ++++    WW+     Q  +R       + G 
Sbjct: 904 DFQSADGPPIMILSVRAGGTGITLTE-ASVVIHIDRWWNPAVEDQATDR-----AYRIGQ 957

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V VY L+ Q TIDE +   + +K  +   ++ A
Sbjct: 958 NKSVEVYKLVVQGTIDERIHDIIMSKRELAGDIVGA 993


>gi|322382215|ref|ZP_08056128.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153796|gb|EFX46164.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 951

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 26  ASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +   K  Q+ N    V  +      E    K+  L  ++ +        ++   F    
Sbjct: 742 LAALTKLKQICNHPALVLKERPGGPWEQRSGKLDRLVEMVHELRDEGDKCLIFTQFVDTG 801

Query: 82  ARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLN 124
             LQ    Q           G +       I  + +  +P      +      + G GLN
Sbjct: 802 FLLQHVLEQELGHPVLFLHGGSSKADRDKMIARFQDLTLPEDEQRYVFLLSLKAGGTGLN 861

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    N +  F  WW+     Q  +R       + G  R V V+  I   T++E + + +
Sbjct: 862 LT-AANHVFHFDRWWNPAVENQATDR-----AYRIGQTRNVQVHKFITLGTLEERIDEMI 915

Query: 185 RTKSTIQDLLL 195
             K  +   ++
Sbjct: 916 EQKLGLSQQIV 926


>gi|167464191|ref|ZP_02329280.1| SWF/SNF family helicase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 948

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 26  ASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +   K  Q+ N    V  +      E    K+  L  ++ +        ++   F    
Sbjct: 739 LAALTKLKQICNHPALVLKERPGGPWEQRSGKLDRLVEMVHELRDEGDKCLIFTQFVDTG 798

Query: 82  ARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLN 124
             LQ    Q           G +       I  + +  +P      +      + G GLN
Sbjct: 799 FLLQHVLEQELGHPVLFLHGGSSKADRDKMIARFQDLTLPEDEQRYVFLLSLKAGGTGLN 858

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    N +  F  WW+     Q  +R       + G  R V V+  I   T++E + + +
Sbjct: 859 LT-AANHVFHFDRWWNPAVENQATDR-----AYRIGQTRNVQVHKFITLGTLEERIDEMI 912

Query: 185 RTKSTIQDLLL 195
             K  +   ++
Sbjct: 913 EQKLGLSQQIV 923


>gi|74008377|ref|XP_865534.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 16 [Canis familiaris]
          Length = 1052

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|74008373|ref|XP_865495.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 14 [Canis familiaris]
          Length = 1063

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|213963570|ref|ZP_03391823.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           sputigena Capno]
 gi|213953850|gb|EEB65179.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           sputigena Capno]
          Length = 951

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAY 75
           E I  FN+     K  Q++N  V  D E     +   K + +   +E  +      ++  
Sbjct: 752 EPISEFNALQMLTKLRQISNHPVLADAEST---IPSGKYQEVISYMETLHTAQHKALIFS 808

Query: 76  HFNSDLA---------RLQKAFPQGRTL--DKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            F   L          +++ +   G T   ++        N+  +   F    +   GLN
Sbjct: 809 SFVKHLELFEAWCKTHKIKYSKLTGATATHERKSQVEAFQNQEDVSFFFISLKAGEVGLN 868

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++    WW+    +Q I R       + G +  V V   +++++I+E +++  
Sbjct: 869 LTK-ASYVLLLDPWWNPFSERQAIAR-----AHRIGQENKVNVIRFVSKDSIEEKIIKLQ 922

Query: 185 RTKSTIQDLLLN 196
             K+ + + +++
Sbjct: 923 ENKTELFENVID 934


>gi|115657922|ref|XP_785657.2| PREDICTED: similar to Rad54b [Strongylocentrotus purpuratus]
 gi|115931907|ref|XP_001183532.1| PREDICTED: similar to Rad54b [Strongylocentrotus purpuratus]
          Length = 770

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAP-----IIVAYHFNSDLARLQK----------AF 88
            E      H  K+  L  ++   +A P     +++  ++   L  LQ             
Sbjct: 487 SEGRPLLAHCGKLCVLSEMLRAMHADPTRRERLVLVSNYTQTLDILQALCSIEGYQFCRL 546

Query: 89  PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  K    ++ +N    K  +      + G GLNL  G + L+ + + W+     Q
Sbjct: 547 DGSTPTAKRQSIVEHFNSSYAKETIFLLSSKAGGVGLNL-IGASRLLLYDIDWNPANDLQ 605

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R+      + G K+ V +Y LI   TI+E + QR  +K ++   +++A
Sbjct: 606 AMARVW-----RDGQKKTVHIYRLITAGTIEEKIYQRQISKQSLSGAVVDA 651


>gi|156379220|ref|XP_001631356.1| predicted protein [Nematostella vectensis]
 gi|156218395|gb|EDO39293.1| predicted protein [Nematostella vectensis]
          Length = 836

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQ 90
           ++          K+  L  ++E+ +     +++  +++  L  LQK              
Sbjct: 555 NDASELSIAQSGKLTVLNSMLEEIHCTGERVVLVSNYSQTLDILQKLCTVKKYRYLRLDG 614

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                K    ++ +N       +      + G GLNL  G + L+ + + W+     Q +
Sbjct: 615 STPTAKRQSLVERFNAKHCQDFVFLLSSKAGGVGLNL-IGASRLILYDIDWNPANDLQAM 673

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R+      + G +R V +Y L+   TI+E + QR  TK  +   + +  K
Sbjct: 674 ARVW-----RDGQRRRVVIYRLLTTGTIEEKIYQRQTTKQGLSGAVADDRK 719


>gi|255721613|ref|XP_002545741.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
 gi|240136230|gb|EER35783.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
          Length = 1368

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+  L+ ++     N   I++ +     +   Q+                T++     + 
Sbjct: 1219 KLAKLDELLVDLKKNGHRILIYFQMTRMMEIFQEYLAFRNYKFMRLDGSTTIEARRELVT 1278

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +W    +  +      + G GLNL    + ++F+   W+     Q ++R       + G 
Sbjct: 1279 QWQTNPEFFIFMLSTRAGGLGLNLT-SADTVIFYDSDWNPTVDAQAMDR-----AHRIGQ 1332

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + V VY L+ +NTI+E + Q+ + K  IQ L++N
Sbjct: 1333 TKVVTVYRLLTKNTIEERIRQKAQNKEEIQKLVIN 1367


>gi|74008379|ref|XP_865551.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 17 [Canis familiaris]
          Length = 1063

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|152964981|ref|YP_001360765.1| Non-specific serine/threonine protein kinase [Kineococcus
            radiotolerans SRS30216]
 gi|151359498|gb|ABS02501.1| Non-specific serine/threonine protein kinase [Kineococcus
            radiotolerans SRS30216]
          Length = 1029

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 30/218 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA------SKTVKCLQLANGAVYY--DEEKHWKEVH- 52
              Y +   +L   L  E+ +    A      +   +  Q+ N   +Y  D          
Sbjct: 790  ALYRQVVDDLVRRLAEEDPDPRGPARRGLVLATLTRLKQICNHPAHYLADASGVLHRGRH 849

Query: 53   -DEKIKALEVIIEKA--NAAPIIVAYHFN--------SDLARLQKAFP---QGRTLDKDP 98
               K++ L+ I+  A      ++    F             R  +  P    G       
Sbjct: 850  RSGKLELLDDIVTSARAEGEKVLCFTQFAEFGHLLGPHLAERTGEPVPFLHGGVPRRARD 909

Query: 99   CTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + E++    P ++     + G GLNL    N +V    WW+     Q  +R       
Sbjct: 910  AMVAEFSSADGPGVMLLSLRAGGTGLNLT-AANHVVHVDRWWNPAVEDQATDR-----AY 963

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  R+V V  +++  T++E V   +  K  + D ++
Sbjct: 964  RIGQHRSVQVRKMVSVGTVEERVDAVITRKRGLADAVV 1001


>gi|74008361|ref|XP_865393.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform b
           isoform 8 [Canis familiaris]
          Length = 998

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 353 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 472

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 576


>gi|190348945|gb|EDK41499.2| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGA--VYYDE------EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYH 76
           + ++  +  +G+  +  D+      +K  +  +  K   LE     I       I++  +
Sbjct: 538 ELLRLPEEVSGSEDILPDDYESSGRDKEIRTWYSGKFAMLERFLHQIRTETDDKIVLISN 597

Query: 77  FNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLN 124
           +   L  +++                 ++K    +  +N  EG+  +      + G G+N
Sbjct: 598 YTQTLDLIERMCRYKRYQCCRLDGTMNINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGIN 657

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L  G N L+     W+    QQ + R+      + G K+  F+Y  I+  TI+E + QR 
Sbjct: 658 L-IGANRLILLDPDWNPAADQQALARVW-----RDGQKKDCFIYRFISTGTIEEKIFQRQ 711

Query: 185 RTKSTIQDLLLN 196
             K ++   +++
Sbjct: 712 SMKLSLSSCVVD 723


>gi|187735422|ref|YP_001877534.1| Non-specific serine/threonine protein kinase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425474|gb|ACD04753.1| Non-specific serine/threonine protein kinase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 895

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 20/183 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
             +  Q+ N    +     +      K + L+ +     A     I+   F S +  L  
Sbjct: 696 LARLKQICNHPAQFQGTDDYAPERSGKFRRLQELCASIAARQEKTILFTQFRSIIPHLHD 755

Query: 87  AFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVF 134
                          G  + +    +  + +   P        + G GL L    + ++ 
Sbjct: 756 LLSGVFGRSGLTLHGGTPIPERQNIVTAFQKESGPPFCILSLKAAGTGLTLTQASH-VIH 814

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              WW+     Q  +R       + G  R V V+ LI + TI++ +   L+ K  + D L
Sbjct: 815 VDRWWNPAVENQATDR-----AYRIGQHRNVLVHRLICRGTIEDRIDAMLKDKRRMADDL 869

Query: 195 LNA 197
            + 
Sbjct: 870 FSG 872


>gi|227487933|ref|ZP_03918249.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542574|ref|ZP_03972623.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092139|gb|EEI27451.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181772|gb|EEI62744.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1039

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 28/216 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAV--YYDEEKHWKEVH--D 53
              Y  +  ++   LQ + +          +   +  Q+ N       D  +         
Sbjct: 795  ALYKSYVDDVQRKLQEQKMGGIQYRGIVLASLTRIKQICNHPAHFLGDGSEMTHHGKHRS 854

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD------------KDPC 99
             K++ L  I++ A      +++   + +    LQ    +   +D            +   
Sbjct: 855  GKVEKLMEIVDAALLRERRVLIFTQYTAFGTMLQHYLAERTGIDIPFLHGGVPQKMRTRM 914

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +EG  P+      + G GLNL      +V    WW+     Q  +R       + 
Sbjct: 915  VADFQSEGGPPIFILSLKAGGTGLNLT-AATEVVHMDRWWNPAVEDQATDR-----AYRI 968

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G +  V VY ++A  T++E + + L  K+ +   ++
Sbjct: 969  GQESDVHVYKMVAAGTLEEKIQKVLEEKTALAGSVV 1004


>gi|254576997|ref|XP_002494485.1| ZYRO0A02618p [Zygosaccharomyces rouxii]
 gi|238937374|emb|CAR25552.1| ZYRO0A02618p [Zygosaccharomyces rouxii]
          Length = 1438

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K++ L+ ++     N   +++ +     +  +++                 L+     
Sbjct: 1265 SAKLRKLDELLVDLKRNGHRVLIYFQMTKMMDLMEEYLTYRQYKHIRLDGSSKLEDRRDL 1324

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W     + +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1325 VHDWQTVPDLFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1378

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ ++TI+E +  R + K  +Q +++  
Sbjct: 1379 GQTRQVTVYRLLVRDTIEERMRDRAKQKEHVQQVVMEG 1416


>gi|74008367|ref|XP_865444.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 11 [Canis familiaris]
          Length = 1068

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|298715164|emb|CBJ34003.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 573

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              K++AL      ++E+  AA  IV   F + L  ++    +G+           +DK 
Sbjct: 400 SSTKMEALMEEVHLMMERDPAAKAIVFSQFVNMLDLIEFRMHKGQVGCRKLSGHLSVDKR 459

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +Q +  +  + +L     + G  LNL    N +     WW+     Q I+R      
Sbjct: 460 EEVLQAFQTDPGVKVLLISLKAGGVALNLTV-ANHIFLMDPWWNPAAEMQAIDR-----T 513

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + ++    I ++T++E +++    K  + D  +  
Sbjct: 514 HRLGQFKPIYATRFIIEDTVEERIIKLQEKKQLVFDSTVGG 554


>gi|210075893|ref|XP_503715.2| YALI0E09012p [Yarrowia lipolytica]
 gi|199426896|emb|CAG79304.2| YALI0E09012p [Yarrowia lipolytica]
          Length = 1457

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++ +  A    ++V +     +   ++                 L      
Sbjct: 1245 SGKLAKLDELLAELKAGGHRVLVYFQMTKMMDLAEEYLTFKQYNYCRLDGSSKLSDRRDL 1304

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  + ++ +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1305 VNDWQTKPELFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1358

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q+++++ 
Sbjct: 1359 GQTRQVTVYRLLVKGTIEERMRDRAKQKEHVQNVVMSG 1396


>gi|316969354|gb|EFV53467.1| DNA repair protein Rhp54 [Trichinella spiralis]
          Length = 328

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L   ++      +++  ++   L   ++                T  K    + +
Sbjct: 85  RVLDGLLAYVKANTDDKVVLVSNYTQTLDLFEQLCILRNYGFVRLDGSMTKKKRAKIVAD 144

Query: 104 WNEGKI----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +N+ ++     +      + G GLNL  G N LV F   W+     Q + R+      + 
Sbjct: 145 FNDPQVGNSTFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDGQAMARVW-----RD 198

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+  F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 199 GQKKICFIYRLLATGSIEEKIFQRQTHKKALSSCVVD 235


>gi|169806094|ref|XP_001827792.1| SWF-SNF family helicase [Enterocytozoon bieneusi H348]
 gi|161779078|gb|EDQ31104.1| SWF-SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 823

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLAR-----LQKAFPQGRT-----LDKDPC 99
           +  K+K L+ ++ + N     +++ +     +       ++K +   R      + +   
Sbjct: 666 NSGKLKVLDDLLVQLNKGNHRVLIYFQMTRMMDLFEEFLIEKQYSYLRLDGTCKVSQRKE 725

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  W N  +  +      + G GLNL    + ++F+   W+    QQ ++R+      +
Sbjct: 726 LVNLWQNTDRHFIFMLSTRAGGVGLNLT-AADTVIFYDSDWNPTVDQQAMDRV-----YR 779

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY LI + TI+E +++    K  +Q L++
Sbjct: 780 LGQTKDVTVYRLITKGTIEERIMEMAEKKGEMQKLVI 816


>gi|15239896|ref|NP_199166.1| SNF2 domain-containing protein / helicase domain-containing protein /
            RING finger domain-containing protein [Arabidopsis
            thaliana]
 gi|60390960|sp|Q9FIY7|SM3L3_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3; Short=SMARCA3-like protein 3
 gi|10178192|dbj|BAB11616.1| DNA repair protein-like [Arabidopsis thaliana]
 gi|332007595|gb|AED94978.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
          Length = 1277

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTL 94
             D  K+WKE     E +K LE I +  +    IV   + S L  L     ++ F   R  
Sbjct: 1099 VDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFD 1158

Query: 95   DK-----DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             K         ++E+NE K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 1159 GKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLT-AASSVFLMDPWWNPAVEEQAI 1217

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G KR VFV   I ++T++E + Q    K 
Sbjct: 1218 MRI-----HRIGQKRTVFVRRFIVKDTVEERMQQVQARKQ 1252


>gi|262182653|ref|ZP_06042074.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1023

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 74/188 (39%), Gaps = 24/188 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEKA--NAAPIIVAYHFNS 79
            +   +  Q+ N   ++  +     +       K++ L  II++A  ++   ++   + +
Sbjct: 816 LASLTRIKQICNHPAHFLADGSPVTIKGKHRSGKVEELMRIIDQAIESSERALIFTQYKA 875

Query: 80  DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQY 127
               LQ    +           G + ++    ++E+      P++     + G GLNL  
Sbjct: 876 FGDVLQPYLSEQLGCEIPFFHGGVSKNRRDQMVEEFQAEDGAPVMLLSLKAGGTGLNLT- 934

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +I+V    WW+     Q  +R       + G +R V VY +I   T++E +   L  K
Sbjct: 935 AASIVVHMDRWWNPAVENQATDR-----AFRIGQQRNVQVYKMITAGTLEESIQDILDGK 989

Query: 188 STIQDLLL 195
           + +   ++
Sbjct: 990 TQLAGAVV 997


>gi|50302399|ref|XP_451134.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640265|emb|CAH02722.1| KLLA0A03069p [Kluyveromyces lactis]
          Length = 895

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 48  WKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            +     K   L      I  ++N   +++  ++   L  ++K                 
Sbjct: 647 IQTAFSSKFSVLARFLYKIKTESNDKIVLI-SNYTQTLDLIEKMCFSNHYGVLRLDGTMN 705

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R+
Sbjct: 706 INKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALARV 764

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 765 W-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 804


>gi|254570653|ref|XP_002492436.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238032234|emb|CAY70235.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328353550|emb|CCA39948.1| DNA repair and recombination protein RAD54 and RAD54-like protein
           [Pichia pastoris CBS 7435]
          Length = 838

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 21/168 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +  +  H  K   L+     I K     I++  ++   L  ++K               
Sbjct: 586 NREVQVWHSSKFLILQRFLYKINKETNDKIVIISNYTQTLDLIEKLCISSRYGSLRLDGT 645

Query: 92  RTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    + ++N  EGK  +      + G G+NL  G N L+     W+    QQ + 
Sbjct: 646 MNINKRQKLVDKFNNPEGKEFVFLLSSKAGGCGINL-IGANRLILVDPDWNPASDQQALA 704

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G  +  F+Y  IA  +I+E + QR   K  +   ++++
Sbjct: 705 RVW-----RDGQTKNCFIYRFIATGSIEEKIFQRQSAKLQLSSCVVDS 747


>gi|226360675|ref|YP_002778453.1| helicase [Rhodococcus opacus B4]
 gi|226239160|dbj|BAH49508.1| putative helicase [Rhodococcus opacus B4]
          Length = 947

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 26/212 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEK 55
             Y     ++   ++ +       A      K  Q+ N   ++  +        +    K
Sbjct: 712 ALYRAVVDDMMAQIKDKKGMKRKGAVLAALTKLKQVCNHPAHFLRDGSAVMRRGQHRSGK 771

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I++   A+    ++   F      +     +           G    K    + 
Sbjct: 772 LGLVEDILDSVVADGEKALLFTQFREFGDLVVPYLAERFGTPVPFLHGGVPKQKRDDMVA 831

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      P++     + G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 832 SFQGDDGPPIMMLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQ 885

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +R V V  L+   T++E +   + TK  + DL
Sbjct: 886 RRDVQVRKLVCVGTLEERIDAMIATKQELADL 917


>gi|330798162|ref|XP_003287124.1| hypothetical protein DICPUDRAFT_87450 [Dictyostelium purpureum]
 gi|325082902|gb|EGC36370.1| hypothetical protein DICPUDRAFT_87450 [Dictyostelium purpureum]
          Length = 521

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRT 93
            +Y           D  +  L  +++    +  ++   + S L  ++      + P  R 
Sbjct: 341 PIYDSSNWKSSTKIDSLLDELNKVLKNEPDSKCLIFSQWTSMLDLIEIPLNINSMPFVRL 400

Query: 94  LDKDPC-----TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             K P       I+ +  E  I +      + G GLNL    + +     WW+    +Q 
Sbjct: 401 DGKIPQKQREVAIKRFKEEPSIKIFLISIKAGGLGLNLVVASH-VFLCDPWWNPATEEQA 459

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           I+R+      + G  + V V     +++I+E +L+  ++K  +    L  +KK+   
Sbjct: 460 IDRV-----YRIGQNKNVNVIRFFIKDSIEEKILELQKSKKDLAKEAL-TMKKQPQQ 510


>gi|312139122|ref|YP_004006458.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311888461|emb|CBH47773.1| putative ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 945

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAV--YYDEEKHWKEVH--DEK 55
             Y     ++   ++         A  +   +  Q+ N       D     +       K
Sbjct: 710 ALYRAVVDDMLKKIKDTEGMQRKGAVLSALTRLKQVCNHPAHFLGDGSGVLRRGRHRSGK 769

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I++   A+    ++   F      +     +           G    +    ++
Sbjct: 770 LALVEDILDSVTADGERALLFTQFREFGDLVVPYLEERFGTDVPFLHGGVPKARRDRMVE 829

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      P++     + G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 830 RFQGDDGPPVMLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQ 883

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V V  L+   T++E +   +  K  + DL +
Sbjct: 884 RRDVQVRKLVCVGTLEERIDAMISNKQELADLAI 917


>gi|302852393|ref|XP_002957717.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
 gi|300257011|gb|EFJ41266.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
          Length = 610

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 25/209 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-------ALEVIIEKA 66
           D    + E    A ++ + LQL    +        K+    K++        L+ + E  
Sbjct: 224 DADASDAEVAVGAERSAQLLQLCGRFMLRRTCGLMKKYLPPKVEQVAVLEMMLKAVREGG 283

Query: 67  NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQE-WNEGKIP--LLFA 114
           +   +++  ++   L  L+              G    K    I + +N+   P  LL  
Sbjct: 284 SGDKVVLVSNYTEALDVLEVMCRTHGWVSLRLDGSCSVKSRQPIVDTFNDPSHPSFLLLL 343

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+  G N LV F   W+     Q + R+      + G K+ V++Y L+   
Sbjct: 344 SSKAGGVGLNI-IGANRLVLFDPDWNPANDLQAMARVW-----RQGQKKKVWIYRLLTTG 397

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           TI+E V QR   K  +   +++    ++ 
Sbjct: 398 TIEEKVYQRQLAKQGLSAAVVDDTAAQSR 426


>gi|281208073|gb|EFA82251.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 2100

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 17/146 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
                +++       +  L+                  L+     + ++  +  I +    
Sbjct: 1787 EGHRVLIYCQMTKMINILEDFVIFRKYKYLRLDGSSKLEDRRDLVDDFQTDPSIFVFLLS 1846

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +CG G+NL    + ++FF   W+    +Q ++R       + G  + V VY LI + T
Sbjct: 1847 TRACGIGINLT-SADTVIFFDSDWNPTMDEQAMDRC-----HRLGQLKPVTVYRLITKGT 1900

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKE 201
            ++E V++R + K  IQ +++   K E
Sbjct: 1901 VEEKVIKRAKQKHQIQSIVIAGGKFE 1926


>gi|194855241|ref|XP_001968502.1| GG24469 [Drosophila erecta]
 gi|292630862|sp|B3NAN8|RAD54_DROER RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190660369|gb|EDV57561.1| GG24469 [Drosophila erecta]
          Length = 784

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I    N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 507 MLAAIRADGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 565

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 566 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 619

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 620 YIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|170050421|ref|XP_001861304.1| helicase [Culex quinquefasciatus]
 gi|167872038|gb|EDS35421.1| helicase [Culex quinquefasciatus]
          Length = 1024

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYDE-------EKHWK 49
           K QRE Y  +  ++I+  N A K  K       +QL    N    +D           W 
Sbjct: 370 KMQREWYTKILMKDIDIVNGAGKMEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDWH 429

Query: 50  EV-HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            V +  K+  LE ++ K     + +++       L  L+              G+T  +D
Sbjct: 430 LVENSGKMIILEKLLNKLQEQGSRVLIFSQMTRMLDILEDYCHWRGYNYCRLDGQTPHED 489

Query: 98  P-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N    +  +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 490 RTKMIDEYNAEGSQKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 544

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI +NTI+E +++R   K  +  L++ 
Sbjct: 545 -AHRIGQKKQVRVFRLITENTIEEKIVERAEIKLKLDKLVIQ 585


>gi|164419749|ref|NP_620604.2| probable global transcription activator SNF2L1 isoform b [Homo
           sapiens]
 gi|57208176|emb|CAI42682.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208837|emb|CAI42612.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
          Length = 1042

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|288559877|ref|YP_003423363.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
 gi|288542587|gb|ADC46471.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
          Length = 698

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 1   MKQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +K Y+     ++ ++                    Q  N    +      K     K++ 
Sbjct: 471 IKLYNAVLDGIFEEIDELKGIERRGTILKTITSLKQTCNHPAQFLGSGKPKIKESGKMEL 530

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           L  I+E        +++   +      +Q    +            ++ ++    I  + 
Sbjct: 531 LITILENIMDMDEKVLIFTQYVKMGEIIQDLVSKKLKREVLFLHGSQSRNEKAEIIDRFQ 590

Query: 106 EGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E     +L A   + G GLNL    N ++ + LWW+     Q  +R+      + G ++ 
Sbjct: 591 EDDNYKILIATLKTGGVGLNLTAASN-VIHYDLWWNPAVENQATDRV-----HRIGQEKD 644

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V VY  I + T++E +   ++TK  + +  ++
Sbjct: 645 VMVYRFITKGTLEEEIDSIIKTKLDLAEKAIS 676


>gi|119632238|gb|EAX11833.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_a [Homo
           sapiens]
          Length = 946

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 335 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 394

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 395 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 454

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 455 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 513

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 514 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 558


>gi|162312570|ref|XP_001713118.1| SNF2 family helicase Swr1 [Schizosaccharomyces pombe 972h-]
 gi|46397086|sp|O13682|SWR1_SCHPO RecName: Full=Helicase swr1
 gi|159884045|emb|CAA22447.2| SNF2 family helicase Swr1 [Schizosaccharomyces pombe]
          Length = 1288

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 75/188 (39%), Gaps = 19/188 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
            +  + K     Q +        +K   +    K++ L+ +++   +N   +++       
Sbjct: 960  YEVSRKINPLHQASTRLAIAFPDKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKV 1019

Query: 81   LARLQKAF---------PQGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            L  L++             G T  +    +  +  N+ KIP+      S G G+NL  G 
Sbjct: 1020 LDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLT-GA 1078

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F+   W+ +   Q        R  + G  R V +Y LI++ T++  +L+R   K  
Sbjct: 1079 DTVIFYDSDWNPQLDAQA-----QDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRM 1133

Query: 190  IQDLLLNA 197
            +  +++  
Sbjct: 1134 LDKIVIQG 1141


>gi|147921752|ref|YP_684426.1| DNA/RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110619822|emb|CAJ35100.1| putative DNA/RNA helicase (SNF2 family) [uncultured methanogenic
            archaeon RC-I]
          Length = 1042

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 26/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKE----VHDEKI 56
             Y      +   +                +K  Q+ +    Y +     +    +   K+
Sbjct: 806  LYEAIVENMLKSIDKATAMQRRGIVLASLMKLKQVCDHPSLYIKTGAVTDDKTLIRSGKL 865

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQE 103
            K L  ++E+A      +++   F      L+                G         +  
Sbjct: 866  KRLTELLEEALAEGDSVLIFTQFVEMGEMLKAYLQSTFDEEALFLHGGVPQKARDKMVLR 925

Query: 104  WNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + E   P +      + G GLNL    + +  F  WW+     Q  +R       + G  
Sbjct: 926  FGEKDGPRIFIVSLKAGGVGLNLTKASH-VFHFDRWWNPAVENQATDR-----AYRIGQS 979

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V+  +   T++E + + + +K  +   +L
Sbjct: 980  KNVLVHKFVCAGTLEEKIDELIESKKALSANIL 1012


>gi|315224242|ref|ZP_07866081.1| Snf2 family helicase [Capnocytophaga ochracea F0287]
 gi|314945790|gb|EFS97800.1| Snf2 family helicase [Capnocytophaga ochracea F0287]
          Length = 950

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           E I  FN+ +  ++  +++      D E K     ++E I  +E +++ +     ++   
Sbjct: 751 EPITEFNTLNMLMRLRKISLHPKLVDKESKITSGKYEEVINYMEELLQSS--RKALIFSS 808

Query: 77  FNSDLAR---------LQKAFPQGRT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F S LA          ++ A   G T   ++        N   I   F    +   GLNL
Sbjct: 809 FVSHLALYEEWCNKKGIKYAKLTGETPSFERKNQVEMFQNNPTISFFFISLKAGEVGLNL 868

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++    WW+    +Q I R       + G +  V V   ++++TI+E +++  +
Sbjct: 869 TQ-ASYVLLLDPWWNPFSEKQAIGR-----AHRIGQQNKVNVIRFVSKDTIEEKIIKLQK 922

Query: 186 TKSTIQDLLLN 196
           +K  + + +++
Sbjct: 923 SKRELSENIID 933


>gi|119632239|gb|EAX11834.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_b [Homo
           sapiens]
          Length = 1029

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 384 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 443

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 444 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 503

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 504 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 562

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 563 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 607


>gi|226307453|ref|YP_002767413.1| helicase [Rhodococcus erythropolis PR4]
 gi|226186570|dbj|BAH34674.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 938

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 26/212 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWK----EVHDEK 55
             Y     E+   ++G        A  +   K  Q+ N   ++  +        +    K
Sbjct: 703 ALYRAVVDEMMAQIKGTEGMKRKGAVLSALTKLKQVCNHPAHFLRDGSPVMRRGQHRSGK 762

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I+E   A+   +++   F      +                 G +       ++
Sbjct: 763 LGLVEDIVESVTADDEKVLLFTQFREFGELVVPYLADRFTTEVPFLHGGVSKAGRDAMVE 822

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      P++     + G GLNL    N +V    WW+     Q  +R+      + G 
Sbjct: 823 AFQGADGPPIMVLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDRVF-----RIGQ 876

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ++ V V  ++   T++E +   + +KS + +L
Sbjct: 877 RKNVQVRKMVCVGTLEERIDTMIASKSELAEL 908


>gi|156844645|ref|XP_001645384.1| hypothetical protein Kpol_534p5 [Vanderwaltozyma polyspora DSM 70294]
 gi|206557735|sp|A7TJI3|INO80_VANPO RecName: Full=Putative DNA helicase INO80
 gi|156116046|gb|EDO17526.1| hypothetical protein Kpol_534p5 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1556

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++ +       +++ +     +  +++                 L+     
Sbjct: 1376 SAKLKKLDELLVELKKGDHRVLIYFQMTKMMDLMEEYLTYRQYSHIRLDGSSKLEDRRDL 1435

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W     I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1436 VHDWQTRPDIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1489

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1490 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEG 1527


>gi|283781798|ref|YP_003372553.1| Non-specific serine/threonine protein kinase [Pirellula staleyi DSM
           6068]
 gi|283440251|gb|ADB18693.1| Non-specific serine/threonine protein kinase [Pirellula staleyi DSM
           6068]
          Length = 594

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 27/206 (13%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E   DL   G+ I   +     ++  Q+ N                 K++ LE 
Sbjct: 371 YQMAEKEGVMDLNNMGDQITIQHVFELVLRLKQICNF--------DPVTGCSAKLERLEA 422

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEGKIP 110
            +E+  A+    IV   +   L ++ +   +   L          +DP   Q   + K  
Sbjct: 423 DLEEVAASGKKAIVFSQWVRCLDQITEKLQRFNPLSYHGQIPSKKRDPILKQFKEDKKHS 482

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNLQ+    +  F  WW+     Q I R       + G    V V  +
Sbjct: 483 VLLMSYGAGSVGLNLQF-CEYVFLFDRWWNPAIEDQAINR-----AHRIGAAGPVTVTRM 536

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  TI+E + Q L  K  I + +L+
Sbjct: 537 LAMGTIEERINQVLEHKREIFNTILS 562


>gi|194271429|gb|ACF37172.1| SNF2LT [Homo sapiens]
          Length = 776

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W  +   Q
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWSPQVDLQ 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 592 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636


>gi|222623475|gb|EEE57607.1| hypothetical protein OsJ_07989 [Oryza sativa Japonica Group]
          Length = 2104

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             ++   +    K++ L +++ +  +     ++       L  L++             G 
Sbjct: 1129 PDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGS 1188

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   K  L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1189 TQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1247

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1248 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1288


>gi|211828096|gb|AAH51825.2| SMARCA1 protein [Homo sapiens]
          Length = 965

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 350 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 409

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 410 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 469

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 470 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 528

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 529 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 573


>gi|167535609|ref|XP_001749478.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772106|gb|EDQ85763.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1903

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 31/227 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-- 59
            + Y +   + Y  L        +  +  ++  + AN    +D+ +   E HD  +K L  
Sbjct: 881  RFYKELLAKNYSFLTATTQGVSSLNNLLMQLRKCANHPYLFDDAEPEVEDHDAMVKLLVG 940

Query: 60   ----EVIIEKA------NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
                 ++++            +++       L  LQ                  +     
Sbjct: 941  ASGKTLLLDMMLRKLKEQGHRVLIFSQMTRMLDILQDIMMYRGYHCCRLDGNTDILTRQE 1000

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E++       +      + G G+NL    + ++ F   W+     Q + R       
Sbjct: 1001 QIDEFSRPDSDAFVFLLSTRAGGLGINLTT-ADTIIIFDSDWNPHADLQALAR-----AH 1054

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKETI 203
            + G K  V VY  ++ NT++E +L+R R K  +   + ++ LKK  +
Sbjct: 1055 RIGQKNLVMVYRFVSVNTVEERILRRAREKLRLDQAVRMDKLKKSEL 1101


>gi|312221230|emb|CBY01171.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1275

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
                 K+  L+ ++++  A    +++ +     +  +++                 L+  
Sbjct: 988  VTDSGKLAQLDALLKELKAGDHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1047

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T+ ++   + I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1048 RDTVADFQSDRSIFVFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1101

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1102 HRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1142


>gi|67464359|pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
 gi|67464360|pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
          Length = 500

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            S  +K  Q+ +        +        K      IIE+A      I +   F      
Sbjct: 298 LSTLLKLKQIVDHPALLKGGEQSVR-RSGKXIRTXEIIEEALDEGDKIAIFTQFVDXGKI 356

Query: 84  LQKAFPQ----------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           ++    +          G    K+   I  +  N   +  +     + G G+NL    N 
Sbjct: 357 IRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT-SANR 415

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F  WW+     Q  +R+      + G  R V V+ LI+  T++E + Q L  K ++ 
Sbjct: 416 VIHFDRWWNPAVEDQATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 470

Query: 192 DLLLNA 197
             ++++
Sbjct: 471 KDIISS 476


>gi|320581375|gb|EFW95596.1| hypothetical protein HPODL_2930 [Pichia angusta DL-1]
          Length = 687

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K++ L+ ++   +     +++   F S L  +++              G T   D   
Sbjct: 456 SAKLQLLDQLLPALHKDGHRVLIFTQFTSMLDLIEEFVNNTLGYKSCRIDGSTDQADRKD 515

Query: 101 -IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I  ++  ++ +      + G GLNL    + ++ F   W+ +   Q ++R+      + 
Sbjct: 516 EIDRFSTEEVDVFLLSTRAGGLGLNLT-AADSVILFDSDWNPQVDLQAMDRV-----HRI 569

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V VY L+  NT++E++L +  +K  ++ L++ 
Sbjct: 570 GQTKPVSVYRLVIANTVEEIMLAKADSKRRLERLVIQ 606


>gi|292630953|sp|B4NXB8|RAD54_DROYA RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
          Length = 784

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I    N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 507 MLAAIRADGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 565

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 566 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 619

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y ++A  +I+E +LQR   K ++   +++
Sbjct: 620 YIYRMVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|195470937|ref|XP_002087763.1| GE14966 [Drosophila yakuba]
 gi|194173864|gb|EDW87475.1| GE14966 [Drosophila yakuba]
          Length = 772

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I    N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 495 MLAAIRADGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 553

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 554 ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 607

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y ++A  +I+E +LQR   K ++   +++
Sbjct: 608 YIYRMVASGSIEEKILQRQTHKKSLSSTIID 638


>gi|190345830|gb|EDK37782.2| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 952

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKANA--APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  L+ ++         +++ +     +  +++                 L+     
Sbjct: 734 SGKLARLDQLLVDLKGDDHRVLIYFQMTKMMDLMEEYLTYRQHRYIRLDGSSKLEDRRDL 793

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W  + +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 794 VHDWQTKPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 847

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V VY L+A+ TI+E +  R + K  +Q +++  
Sbjct: 848 GQTKQVTVYRLLARGTIEERMRNRAKQKEQVQQVVMEG 885


>gi|288555411|ref|YP_003427346.1| helicase Snf2 family [Bacillus pseudofirmus OF4]
 gi|288546571|gb|ADC50454.1| helicase Snf2 family [Bacillus pseudofirmus OF4]
          Length = 1064

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 23/216 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Q  + + ++   +  +  +       +   K  Q+        EE   +     K+  
Sbjct: 844  LAQVKQLRSDVDDAISSDQFQKKRIEILAGLTKLRQICCHPRLVSEEDEVE---SGKLLR 900

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQE------WNE 106
            L   +E+       +++   F S LA ++  F +       LD     ++       +N+
Sbjct: 901  LMEYVEEGMEAGQRMVIFSQFTSMLAIIRAEFEERGWEFFYLDGQTPAVERLRLADQFNQ 960

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  L      + G       GG+ ++ +  WW+    +Q  +R+      + G  + V 
Sbjct: 961  GEKSLFLVSLKAGGT-GLNLTGGDTVILYDTWWNPAIEEQAADRV-----YRFGQTKNVQ 1014

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V  LIA  TI+E +L     K  + D ++   + + 
Sbjct: 1015 VIKLIANGTIEEKILALHEKKKALVDAVIQPGEAQM 1050


>gi|325673577|ref|ZP_08153268.1| SNF2 family superfamily II DNA/RNA helicase [Rhodococcus equi ATCC
           33707]
 gi|325555598|gb|EGD25269.1| SNF2 family superfamily II DNA/RNA helicase [Rhodococcus equi ATCC
           33707]
          Length = 945

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANGAV--YYDEEKHWKEVH--DEK 55
             Y     ++   ++         A  +   +  Q+ N       D     +       K
Sbjct: 710 ALYRAVVDDMLKKIKDTEGMQRKGAVLSALTRLKQVCNHPAHFLGDGSGVLRRGRHRSGK 769

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I++   A+    ++   F      +     +           G    +    ++
Sbjct: 770 LALVEDILDSVTADGERALLFTQFREFGDLVVPYLEERFGTDVPFLHGGVPKARRDRMVE 829

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      P++     + G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 830 RFQGDDGPPVMLLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQ 883

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V V  L+   T++E +   +  K  + DL +
Sbjct: 884 RRDVQVRKLVCVGTLEERIDAMISNKQELADLAI 917


>gi|241958618|ref|XP_002422028.1| DNA helicase, putative [Candida dubliniensis CD36]
 gi|223645373|emb|CAX40029.1| DNA helicase, putative [Candida dubliniensis CD36]
          Length = 1366

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++         I++ +     +   ++                T++     
Sbjct: 1214 SGKLAKLDELLVDLKQGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1273

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+     Q ++R       + 
Sbjct: 1274 VQAWQTNPEIFIFMLSTRAGGLGLNLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRI 1327

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++
Sbjct: 1328 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1363


>gi|308807292|ref|XP_003080957.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
 gi|116059418|emb|CAL55125.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
          Length = 816

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 50  EVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
           E H  K   L  ++          I++  ++   L  + +              G T+ K
Sbjct: 539 EEHSGKFAVLARLLANLRSETKDRIVIISNYTQTLDLIAQMCIERHYPFVRLDGGTTIGK 598

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N+      +      + G G+NL  GGN LV F   W+    +Q   R    
Sbjct: 599 RQKLVKEFNDPTSNSFVFLLSSKAGGCGINL-IGGNRLVLFDPDWNPANDKQAAARCW-- 655

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G K+  ++Y  +A  TI+E V QR  +K ++Q+++
Sbjct: 656 ---RDGQKKKCYLYRFLAAGTIEEKVFQRQLSKESLQNVV 692


>gi|297739163|emb|CBI28814.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DK 96
              KI AL      ++E+  +A  IV   F S L  +  +  +                +
Sbjct: 791 TSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLQKSGITCVQLVGSMSMAAR 850

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D    +  NE    +      + G  LNL    + +     WW+       +ER    R 
Sbjct: 851 DAAISRFTNEPDCKIFLMSLKAGGVALNLTVASH-VFLMDPWWN-----PAVERQAQDRI 904

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + + +   + + TI+E +L+    K  + +  +  
Sbjct: 905 HRIGQYKPIRIVRFVIEKTIEERILKLQEKKELVFEGTVGG 945


>gi|225447045|ref|XP_002269303.1| PREDICTED: similar to SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein [Vitis vinifera]
          Length = 989

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DK 96
              KI AL      ++E+  +A  IV   F S L  +  +  +                +
Sbjct: 816 TSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLQKSGITCVQLVGSMSMAAR 875

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D    +  NE    +      + G  LNL    + +     WW+       +ER    R 
Sbjct: 876 DAAISRFTNEPDCKIFLMSLKAGGVALNLTVASH-VFLMDPWWN-----PAVERQAQDRI 929

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + + +   + + TI+E +L+    K  + +  +  
Sbjct: 930 HRIGQYKPIRIVRFVIEKTIEERILKLQEKKELVFEGTVGG 970


>gi|166240632|ref|XP_001732968.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988704|gb|EDR41103.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1838

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-----AFPQGRTLDKDPC-----TIQ 102
            D  +  L  + +    +  ++   + S L  L+       F   R   K P       I+
Sbjct: 1673 DSLLDELNKVFKNEPDSKCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQREVAIK 1732

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  E  + +      + G GLNL    + +     WW+    +Q I+R+      + G 
Sbjct: 1733 RFKEEPNVKIFLISIKAGGLGLNL-VAASHVFLMDPWWNPSTEEQAIDRV-----YRIGQ 1786

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + V V   + +++I+E +L   ++K  +    LN +KK+T 
Sbjct: 1787 NKNVNVIRFLIKDSIEERILNLQKSKKDLAKEALNTMKKQTR 1828


>gi|146420507|ref|XP_001486209.1| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 952

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKANA--APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  L+ ++         +++ +     +  +++                 L+     
Sbjct: 734 SGKLARLDQLLVDLKGDDHRVLIYFQMTKMMDLMEEYLTYRQHRYIRLDGSSKLEDRRDL 793

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W  + +I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 794 VHDWQTKPEIFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 847

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V VY L+A+ TI+E +  R + K  +Q +++  
Sbjct: 848 GQTKQVTVYRLLARGTIEERMRNRAKQKEQVQQVVMEG 885


>gi|149411093|ref|XP_001509678.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1
           [Ornithorhynchus anatinus]
          Length = 1143

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 499 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 558

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ K     + +++       L  L+             
Sbjct: 559 PPYTTDTHLVNNSGKMVALDKLLSKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 618

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 619 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 677

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT+++ +++R   K  +  +++ 
Sbjct: 678 AMDR-----AHRIGQKKPVRVFRLITDNTVEDRIVERAEIKLRLDSIVIQ 722


>gi|225419973|ref|ZP_03762276.1| hypothetical protein CLOSTASPAR_06314 [Clostridium asparagiforme
           DSM 15981]
 gi|225041395|gb|EEG51641.1| hypothetical protein CLOSTASPAR_06314 [Clostridium asparagiforme
           DSM 15981]
          Length = 421

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 23/198 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF R+    + G         SK +    + +   Y ++ +           A + 
Sbjct: 234 KEYRKFMRDAIITIDGREYIGDTILSKRIYARMMCS---YLNKGRVA---------AFKD 281

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEWNEGKIPLLFAHPA 117
           +++      +IV Y+FN +L  +Q+A  +       ++     +  + E    + F    
Sbjct: 282 LVQSTEER-LIVFYNFNEELNTMQEAIAELERPISIVNGSFKDLTAYEEASDSITFVQYQ 340

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N +++FS+    E  +Q  +RI      + G K+  F Y +I   T++
Sbjct: 341 AGAMGLNLQK-ANRIIYFSMTDRSELFEQSKKRI-----HRIGQKKPCFYYQMICPGTVE 394

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L  L  +    D L 
Sbjct: 395 EDILHTLELRKDYTDELF 412


>gi|196014269|ref|XP_002116994.1| hypothetical protein TRIADDRAFT_60972 [Trichoplax adhaerens]
 gi|190580485|gb|EDV20568.1| hypothetical protein TRIADDRAFT_60972 [Trichoplax adhaerens]
          Length = 1002

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    + QRE Y  +  ++I+  N A KT K       +QL    N    +D  E  
Sbjct: 354 VKVYVGLSRMQREWYTKILMKDIDIVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 413

Query: 47  HWKEVHDE------KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFP 89
                         K+  LE ++   +A  + ++V       L  L         +    
Sbjct: 414 PPYTTDTHLATNCGKMVVLEKLLPRLQAQGSRVLVFSQMTRMLDILEDYCMWKGYKYCRL 473

Query: 90  QGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    IQ +N  +    L      + G G+NL    ++++ +   W+ +   Q
Sbjct: 474 DGSTPHEDRQASIQAFNMPDSDKFLFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 532

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   R  + G  + V V+  I  NTI+E +++R  TK  +  +++ 
Sbjct: 533 A-----QDRAHRIGQTKEVKVFRFITDNTIEERIVERAETKLRLDRIVIQ 577


>gi|311251314|ref|XP_003124552.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP-like [Sus scrofa]
          Length = 3227

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2040 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2099

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2100 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2153

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2154 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2189


>gi|309268993|ref|XP_003084784.1| PREDICTED: helicase SRCAP [Mus musculus]
 gi|309268995|ref|XP_001480453.2| PREDICTED: helicase SRCAP isoform 1 [Mus musculus]
          Length = 3237

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2157

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|309266116|ref|XP_003086692.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP [Mus musculus]
          Length = 3231

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2157

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|301778809|ref|XP_002924810.1| PREDICTED: helicase SRCAP-like [Ailuropoda melanoleuca]
          Length = 3243

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2055 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2114

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2115 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2168

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2169 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2204


>gi|297698573|ref|XP_002826392.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP-like [Pongo abelii]
          Length = 3230

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2157

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|297283843|ref|XP_002802498.1| PREDICTED: helicase SRCAP-like [Macaca mulatta]
          Length = 3071

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2000 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2059

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2060 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2113

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2114 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2149


>gi|293356219|ref|XP_341933.4| PREDICTED: Snf2-related CBP activator protein [Rattus norvegicus]
          Length = 3198

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2021 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2080

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2081 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2134

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2135 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2170


>gi|293344407|ref|XP_001080260.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5-like [Rattus norvegicus]
          Length = 3212

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2035 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2094

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2095 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2148

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2149 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2184


>gi|291411041|ref|XP_002721806.1| PREDICTED: Snf2-related CBP activator protein [Oryctolagus cuniculus]
          Length = 3217

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2028 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2087

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2088 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2141

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2142 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2177


>gi|281352714|gb|EFB28298.1| hypothetical protein PANDA_014226 [Ailuropoda melanoleuca]
          Length = 3225

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2037 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2096

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2097 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2150

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2151 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2186


>gi|194219024|ref|XP_001501219.2| PREDICTED: similar to Snf2-related CBP activator protein [Equus
            caballus]
          Length = 3228

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2052 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2111

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2112 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2165

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2166 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2201


>gi|166796215|gb|AAI59100.1| SRCAP protein [Homo sapiens]
 gi|168272948|dbj|BAG10313.1| Snf2-related CBP activator protein [synthetic construct]
          Length = 3049

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1863 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1922

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1923 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 1976

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1977 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2012


>gi|149067720|gb|EDM17272.1| rCG39385, isoform CRA_a [Rattus norvegicus]
          Length = 1594

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
           K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 569 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 628

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 629 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 682

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 683 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 718


>gi|148685599|gb|EDL17546.1| mCG142078, isoform CRA_a [Mus musculus]
          Length = 2617

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1587 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1646

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1647 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 1700

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1701 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 1736


>gi|146219843|ref|NP_006653.2| helicase SRCAP [Homo sapiens]
 gi|296452947|sp|Q6ZRS2|SRCAP_HUMAN RecName: Full=Helicase SRCAP; AltName: Full=Domino homolog 2;
            AltName: Full=Snf2-related CBP activator
 gi|225000510|gb|AAI72428.1| Snf2-related CREBBP activator protein [synthetic construct]
          Length = 3230

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2157

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|119572598|gb|EAW52213.1| Snf2-related CBP activator protein, isoform CRA_b [Homo sapiens]
          Length = 3168

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1982 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2041

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2042 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2095

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2096 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2131


>gi|119572599|gb|EAW52214.1| Snf2-related CBP activator protein, isoform CRA_c [Homo sapiens]
          Length = 3131

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1945 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2004

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2005 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2058

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2059 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2094


>gi|34535199|dbj|BAC87237.1| unnamed protein product [Homo sapiens]
          Length = 2427

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2157

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|73958382|ref|XP_536900.2| PREDICTED: similar to Snf2-related CBP activator protein [Canis
            familiaris]
          Length = 3104

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1921 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1980

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1981 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2034

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2035 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2070


>gi|5106572|gb|AAD39760.1|AF143946_1 transcriptional activator SRCAP [Homo sapiens]
          Length = 2971

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1785 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1844

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1845 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 1898

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1899 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 1934


>gi|34327954|dbj|BAA20768.2| KIAA0309 [Homo sapiens]
          Length = 3053

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A    +++       L  L++             G T  +    + +
Sbjct: 1867 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1926

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1927 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 1980

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1981 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2016


>gi|111018558|ref|YP_701530.1| helicase [Rhodococcus jostii RHA1]
 gi|110818088|gb|ABG93372.1| probable helicase [Rhodococcus jostii RHA1]
          Length = 961

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 26/212 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEK 55
             Y     ++   ++ +       A      K  Q+ N   ++  +        +    K
Sbjct: 726 ALYRAVVDDMMAQIKDKKGMKRKGAVLAALTKLKQVCNHPAHFLRDGSAVMRRGQHRSGK 785

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
           +  +E I++   A+    ++   F      +     +           G +  K    + 
Sbjct: 786 LGLVEDILDSVVADGEKALLFTQFREFGDLVTPYLAERFGTPVPFLHGGVSKQKRDDMVA 845

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      P++     + G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 846 SFQGDDGPPIMMLSLKAGGTGLNLT-AANHVVHLDRWWNPAVENQATDR-----AFRIGQ 899

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +R V V  L+   T++E +   + TK  + DL
Sbjct: 900 RRDVQVRKLVCVGTLEERIDAMIATKQELADL 931


>gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina
           98AG31]
          Length = 824

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 30/193 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANA 68
            DL  E I+  +S+    K  Q   G +   +   W+     KI+AL      + ++ ++
Sbjct: 621 IDLSQEAIDEESSS----KARQ---GVLARLDPGKWR--TSTKIEALVEELSKLNKEDHS 671

Query: 69  APIIVAYHFNSDLARLQKA-----FPQGRTLD------KDPCTIQEWNEGKIPLLFAHPA 117
              +V   F   L  +++      F   R         +D       N   + +      
Sbjct: 672 IKSLVFSQFTVFLDLIERRLQLAGFKLARLQGHMTPEARDRTIKHFMNNNDVQVFLVSLK 731

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL     + +    WW+     Q ++RI      + G  R V V  LI +N+I+
Sbjct: 732 AGGVALNLTEASRVFIM-DPWWNPAVELQAMDRI-----HRLGQHRPVVVTRLIIENSIE 785

Query: 178 ELVLQRLRTKSTI 190
             +++  + K  +
Sbjct: 786 SRIVELQKKKEAM 798


>gi|301776436|ref|XP_002923633.1| PREDICTED: transcription termination factor 2-like [Ailuropoda
            melanoleuca]
 gi|281337997|gb|EFB13581.1| hypothetical protein PANDA_012813 [Ailuropoda melanoleuca]
          Length = 1157

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPC 99
            E           +  LE I   + +   +V   + S L      L++      T+D    
Sbjct: 980  ENTRVSSKISSLLVELEAIRGNSASQKSVVVSQWTSMLQVVAWHLKRHGLTFATIDGSVN 1039

Query: 100  T------IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                   ++ +N  + P ++    ++ G GLNL  GGN L    + W+     Q  +RI 
Sbjct: 1040 PKQRMDLVEAFNSSRGPQVMLISLSAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI- 1097

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKETI 203
                 + G ++ V V+  I + T++E +L     K T+   +L     ++KK T+
Sbjct: 1098 ----YRVGQQKDVVVHKFICEGTVEEKILHLQEKKKTLAKQVLSGSGESVKKLTL 1148


>gi|294658308|ref|XP_002770756.1| DEHA2F06446p [Debaryomyces hansenii CBS767]
 gi|202953033|emb|CAR66284.1| DEHA2F06446p [Debaryomyces hansenii]
          Length = 884

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + E    +    +    ++SK    + L        ++      + + +  LE I+ K 
Sbjct: 572 IENEHDSTIDLTTLSKKTASSKVNILIPLLIEINQIGDKTVLISNYTQTLDLLETILHKL 631

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           N    I          RL  + P  +  DK      +       +      S G GLNL 
Sbjct: 632 N----ISFS-------RLDGSTPN-KLRDKLVNDFNKQPVSTNSVFLLSAKSGGVGLNL- 678

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G + L+ F   W+     Q + RI      + G  + VF+Y ++    IDE + QR   
Sbjct: 679 IGASRLILFDNDWNPSIDLQAMARI-----HRDGQTKPVFIYRIMTTGCIDEKIFQRQMM 733

Query: 187 KSTIQDLLLN 196
           K+ + D  L+
Sbjct: 734 KNNLSDKFLD 743


>gi|197101878|ref|NP_001127206.1| probable global transcription activator SNF2L1 [Pongo abelii]
 gi|55726189|emb|CAH89868.1| hypothetical protein [Pongo abelii]
          Length = 849

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 204 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 263

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 264 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 323

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 324 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 382

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 383 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 427


>gi|258570331|ref|XP_002543969.1| rad8 protein [Uncinocarpus reesii 1704]
 gi|237904239|gb|EEP78640.1| rad8 protein [Uncinocarpus reesii 1704]
          Length = 979

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 32/188 (17%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNS 79
           N+ +K     +L         EK W+     KI+    I+     +      I+   F +
Sbjct: 784 NAKAKKRYLRRL---------EKRWE--TSAKIEKTLEILRETETRGEGEKTIIFSQFTT 832

Query: 80  DLARL-----QKAFPQGR------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  L     ++ +   R       + ++   ++  +     ++     +   GLNL   
Sbjct: 833 LLDLLEVPIMKEGWKYRRYDGSMSPIQRNEAVLEFTDSQDCKIMLVSLKAGNAGLNL-VA 891

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F  +W+    +Q I+R       + G  R V V+ ++ +NT+++ +L+    K 
Sbjct: 892 ASQVIIFDPFWNPYIEEQAIDR-----AHRIGQTRPVIVHRILVENTVEDRILELQEQKR 946

Query: 189 TIQDLLLN 196
            + +  L+
Sbjct: 947 ELIENALD 954


>gi|294501844|ref|YP_003565544.1| SNF2 family helicase [Bacillus megaterium QM B1551]
 gi|294351781|gb|ADE72110.1| SNF2 family helicase [Bacillus megaterium QM B1551]
          Length = 876

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  + +  + + +              K   L N    Y +E   K+      K + 
Sbjct: 650 LYQELVQGMLQETEEKTGFERKGMILQTLNKLKLLCNHPALYLKESAAKQTVRRSHKSEK 709

Query: 59  LEVIIEK--ANAAPIIVAYHFN---SDLAR-LQKAFPQGRT-------LDKDPCTIQEWN 105
           +  ++E         ++   +      L R L+K   +           ++    + ++ 
Sbjct: 710 IIELVESIRTQQESCLIFTQYIETGLMLQRTLEKEINEPVLFLHGSLSKEQRDAMVAQFQ 769

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K  +      + G GLNL    N ++ F  WW+     Q  +R       + G  + V
Sbjct: 770 ARKKAIFILSLRAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AHRIGQNKFV 823

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + TI+E + + +  K  + + L+  
Sbjct: 824 HVHKFITRGTIEEKIDEVMNQKQHLNNELIQG 855


>gi|116074100|ref|ZP_01471362.1| hypothetical protein RS9916_36657 [Synechococcus sp. RS9916]
 gi|116069405|gb|EAU75157.1| hypothetical protein RS9916_36657 [Synechococcus sp. RS9916]
          Length = 1060

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVH---DE 54
            Q+ LY     + ++A   A              K  Q+ N      +E+   +       
Sbjct: 827  QKSLYAKTVEDTLDAIARAPRGQRHGQVLGLLTKLKQICNHPALALKEEQATDDFLQRSA 886

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC-TI 101
            K++ LE I+++        ++   F      LQ            F  G T  K+    +
Sbjct: 887  KLQRLEEILDEVIEAGDRALLFTQFAEWGHLLQGYLQRRWRSEVPFLSGSTSKKERQAMV 946

Query: 102  QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + E      L      + G GLNL    + +     WW+     Q  +R       + 
Sbjct: 947  DRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYRI 1000

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1001 GQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDII 1036


>gi|148243480|ref|YP_001228637.1| SNF2 family DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147851790|emb|CAK29284.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp.
           RCC307]
          Length = 1016

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 24/188 (12%)

Query: 26  ASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF--- 77
                K  Q+ N        +E          K++ LE I+E+        ++   F   
Sbjct: 810 LGLLTKLKQICNHPALLLGEEEVGTDFASRSAKLQRLEEILEEVMEAGDRALLFTQFASW 869

Query: 78  -----NSDLARLQKAFP---QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
                     R ++  P    G + ++    +  + +      L      + G GLNL  
Sbjct: 870 GHLLKTHLQQRWRQEVPFLHGGSSKNERQAMVDRFQQDPRGPQLFLLSLKAGGVGLNLTR 929

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +     WW+     Q  +R       + G  + V V+  I   +++E + + ++ K
Sbjct: 930 ASH-VFHIDRWWNPAVENQATDR-----AYRIGQTQRVLVHKFITTGSLEEKIDRMIQEK 983

Query: 188 STIQDLLL 195
           +++   ++
Sbjct: 984 ASLAADIV 991


>gi|302144115|emb|CBI23220.3| unnamed protein product [Vitis vinifera]
          Length = 679

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              KI+AL+     ++E   +A  IV   F S L  +  +  Q            T    
Sbjct: 529 TSTKIEALKEEIRFMVEMDGSAKGIVFSQFTSFLDLISYSLHQSGINCVQLVGKMTATAK 588

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +NE     +      S G  LNL    + +     WW+    QQ  +RI     
Sbjct: 589 DAAVKRFNEDPDCKIFLTSLKSGGAALNLPV-ASYVFLMEPWWNPFVEQQAYDRI----- 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + V V   I +NTI+E +L+    K ++ +
Sbjct: 643 HRIGQYKPVRVIKFIIENTIEERILELQEKKESLSE 678


>gi|225444469|ref|XP_002267771.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 792

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              KI+AL+     ++E   +A  IV   F S L  +  +  Q            T    
Sbjct: 621 TSTKIEALKEEIRFMVEMDGSAKGIVFSQFTSFLDLISYSLHQSGINCVQLVGKMTATAK 680

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +NE     +      S G  LNL    + +     WW+    QQ  +RI     
Sbjct: 681 DAAVKRFNEDPDCKIFLTSLKSGGAALNLPV-ASYVFLMEPWWNPFVEQQAYDRI----- 734

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + V V   I +NTI+E +L+    K ++ +
Sbjct: 735 HRIGQYKPVRVIKFIIENTIEERILELQEKKESLSE 770


>gi|195380475|ref|XP_002048996.1| GJ21345 [Drosophila virilis]
 gi|194143793|gb|EDW60189.1| GJ21345 [Drosophila virilis]
          Length = 714

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 37/231 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD--------EEKHW 48
           K QRE Y  L  ++I+  N A K  K           +  N    +D             
Sbjct: 375 KLQREWYTKLLLKDIDVVNGAGKIEKMRLQNILVHLRKCTNHPYLFDGAEPGPPYTTDEH 434

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
                 K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 435 LVNDSGKMIILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCAWRNYNYCRLDGKTEHED 494

Query: 98  P-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N  K    +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 495 RNQMIQEYNMEKSTKFIFLLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 549

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G K+ V V+ L+ +NT+DE +++R   K  +  +++ A +    H 
Sbjct: 550 -AHRIGQKKQVRVFRLVTENTVDEKIVERAEVKLRLDRMVIQAGRVLENHT 599


>gi|291408171|ref|XP_002720328.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 3 [Oryctolagus
           cuniculus]
          Length = 1049

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 420 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 479

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 480 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 539

Query: 90  QGRTL-DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 540 DGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 598

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 599 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 643


>gi|302691444|ref|XP_003035401.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
 gi|300109097|gb|EFJ00499.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
          Length = 842

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
             K   LE  +++        I++  ++   L   +K     R          T  K   
Sbjct: 598 SGKFVVLERFLQRMRTTTTDKIVLISNYTQTLDLFEKMLRGKRYGYFRLDGTMTTTKRQK 657

Query: 100 TIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            + E+N+    +  +      + G G+NL  G N L+ F   W+    QQ + R+     
Sbjct: 658 MVDEFNDPNNTEKFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQQALARVW---- 712

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+  FVY  I+  TI+E + QR   K  +   +++
Sbjct: 713 -RDGQKKECFVYRFISTGTIEEKIFQRQANKQALSSSVVD 751


>gi|242046730|ref|XP_002461111.1| hypothetical protein SORBIDRAFT_02g040960 [Sorghum bicolor]
 gi|241924488|gb|EER97632.1| hypothetical protein SORBIDRAFT_02g040960 [Sorghum bicolor]
          Length = 822

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 27/169 (15%)

Query: 43  DEEKHWKEVHDE----KIKALEVIIEKA-NAAPI---IVAYHFNSDLARLQKAFPQGRTL 94
           DE+       D     K++AL  +++ + N  P+   +V   F   L  L+    +    
Sbjct: 632 DEDGSSNLESDRPLSSKVQALLKLLKASQNEDPLSKSVVFSQFKQMLILLESPLRKAGFK 691

Query: 95  ----------DKDPCTIQEWNEG--KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K    IQE+  G    P +L A   + G G+NL    + +  F  WW+ 
Sbjct: 692 TLRLDGSMSAKKRLQVIQEFTHGGPDSPTVLLASLKAAGAGVNLT-AASTVYLFDPWWNP 750

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +Q ++R+      + G K+ V V  LI +++I+E +L     K  +
Sbjct: 751 GVEEQAMDRV-----HRIGQKKEVKVIRLIVKDSIEERILTLQERKKRL 794


>gi|291408169|ref|XP_002720327.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 2 [Oryctolagus
           cuniculus]
          Length = 1041

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 472 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 531

Query: 90  QGRTL-DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 532 DGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQ 590

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 591 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 635


>gi|146413212|ref|XP_001482577.1| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +K  +  +  K   LE     I       I++  ++   L  +++               
Sbjct: 563 DKEIRTWYSGKFAMLERFLHQIRTETDDKIVLISNYTQTLDLIERMCRYKRYQCCRLDGT 622

Query: 92  RTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + 
Sbjct: 623 MNINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQQALA 681

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+  F+Y  I   TI+E + QR   K ++   +++
Sbjct: 682 RVW-----RDGQKKDCFIYRFILTGTIEEKIFQRQSMKLSLSSCVVD 723


>gi|261157174|gb|ACX54781.1| DEAD/DEAH box helicase domain-containing protein PIE1 [Oryza sativa
            Japonica Group]
          Length = 2044

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             ++   +    K++ L +++ +  +     ++       L  L++             G 
Sbjct: 1069 PDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGS 1128

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   K  L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1129 TQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1187

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1188 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1228


>gi|308198272|ref|XP_001386950.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Scheffersomyces stipitis CBS 6054]
 gi|149388940|gb|EAZ62927.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Pichia stipitis CBS 6054]
          Length = 821

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            +  +  +  K   LE     I  + N   +++  ++   L  +++              
Sbjct: 570 NREVQSWYSGKFMILERFLYQIRSQTNDKIVLI-SNYTQTLDLIERMCRHKKYGSLRLDG 628

Query: 91  GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +++K    + ++N  EG   +      + G G+NL  G N L+     W+    QQ +
Sbjct: 629 TLSINKRQKLVDKFNDPEGNEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQAL 687

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  F+Y  I+  TI+E + QR   K ++   +++
Sbjct: 688 ARVW-----RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVD 730


>gi|115313218|gb|AAI24095.1| Hells protein [Danio rerio]
          Length = 769

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 631 GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 690

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY LI  NTI
Sbjct: 691 RAGGLGINLT-SADTVIIFGSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLITANTI 744

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 745 DEKILERASAKRKLEKMVI 763


>gi|41052809|dbj|BAD07677.1| putative photoperiod independent early flowering1 [Oryza sativa
            Japonica Group]
          Length = 2021

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             ++   +    K++ L +++ +  +     ++       L  L++             G 
Sbjct: 1046 PDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGS 1105

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   K  L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1106 TQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1164

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1165 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1205


>gi|326430023|gb|EGD75593.1| snf family helicase [Salpingoeca sp. ATCC 50818]
          Length = 3098

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             ++   + H  K++ LE ++  +KA    +++       L  L++               
Sbjct: 1619 PDRALIQYHCSKLQVLEKLLREKKAGGHRVLIFTQMAKMLDILEQFLAFHAFTYLRLDGS 1678

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +     + +N   ++        S G G+NL  G + +VF+   W+     Q    
Sbjct: 1679 TPVVRRQQMTERFNRDSRLFCFILSTRSGGLGVNLT-GADTVVFYDSDWNPTMDAQA--- 1734

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y L+   T++E +L++ + K  + D+ +  
Sbjct: 1735 --QDRAHRLGQTRDVHIYRLVCAKTVEENILKKAQQKRQLGDIAIEG 1779


>gi|322825988|gb|EFZ30789.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1044

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
            L+ +    +   +++  +F   L  +     Q R           + +    +  +N  
Sbjct: 705 MLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFNVP 764

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 765 ESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 818

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           F+Y L++  +I+E + QR  +K  +   +++ +K ++  
Sbjct: 819 FIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSDSKQ 856


>gi|71651467|ref|XP_814411.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70879380|gb|EAN92560.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1047

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
            L+ +    +   +++  +F   L  +     Q R           + +    +  +N  
Sbjct: 705 MLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFNVP 764

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 765 ESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 818

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           F+Y L++  +I+E + QR  +K  +   +++ +K ++  
Sbjct: 819 FIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSDSKQ 856


>gi|71662508|ref|XP_818260.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70883500|gb|EAN96409.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1045

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
            L+ +    +   +++  +F   L  +     Q R           + +    +  +N  
Sbjct: 705 MLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFNVP 764

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 765 ESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 818

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           F+Y L++  +I+E + QR  +K  +   +++ +K ++  
Sbjct: 819 FIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSDSKQ 856


>gi|169612227|ref|XP_001799531.1| hypothetical protein SNOG_09232 [Phaeosphaeria nodorum SN15]
 gi|206557941|sp|Q0UG82|INO80_PHANO RecName: Full=Putative DNA helicase INO80
 gi|160702459|gb|EAT83424.2| hypothetical protein SNOG_09232 [Phaeosphaeria nodorum SN15]
          Length = 1673

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DK 96
                 K+  L+ +++  KA    +++ +     +  +++             G T   D+
Sbjct: 1395 VTDSGKLARLDALLKGLKAGDHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1454

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    ++  I +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1455 RDTVADFQSDPTIFVFLLSTRAGGLGINLT-SADTVIFYDSDWNPTIDSQAMDR-----A 1508

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY LI   TI+E + +R   K  +Q ++++ 
Sbjct: 1509 HRLGQTRQVTVYRLITSGTIEERIRKRALQKEEVQRVVISG 1549


>gi|66827655|ref|XP_647182.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475337|gb|EAL73272.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3069

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             +K   +    K++ L +++ +        ++       L   +              G 
Sbjct: 1369 PDKRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGS 1428

Query: 93   T-LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T +DK     + +N + KI L      S G GLNL  G + ++F+   W+     Q  +R
Sbjct: 1429 TKIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDR 1487

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y  I Q+TI+E +L++   K  +  +++ A
Sbjct: 1488 C-----HRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKA 1529


>gi|290998710|ref|XP_002681923.1| SNF2 domain-containing protein [Naegleria gruberi]
 gi|284095549|gb|EFC49179.1| SNF2 domain-containing protein [Naegleria gruberi]
          Length = 1231

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
               K+K L+ ++ K       +++       +  L++   + R           + +   
Sbjct: 1031 DSGKLKVLDQLLSKLKQEGHRVLIFCQMTKMMDLLEEYMYKRRYTFFRLDGSTGISERRD 1090

Query: 100  TIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +   ++           + G G+ L    + ++F+   W+     Q ++R+     
Sbjct: 1091 MVDAFQNQRVDPVFAFLLSTKAGGLGITLT-AADTVIFYDSDWNPTLDAQAMDRV----- 1144

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V +Y LI +N+++E +L   + KSTIQ+ +
Sbjct: 1145 HRIGQTKPVTIYRLITKNSVEERILAIAKQKSTIQETV 1182


>gi|168025390|ref|XP_001765217.1| SNF2 superfamily chromatin remodeling protein [Physcomitrella patens
            subsp. patens]
 gi|162683536|gb|EDQ69945.1| SNF2 superfamily chromatin remodeling protein [Physcomitrella patens
            subsp. patens]
          Length = 2041

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 37/190 (19%)

Query: 39   AVYYDEEKHWKEVHDE-KIKALEVIIEK----------------ANAAPIIVAYHFNSDL 81
            A+     K   E+H   K++AL  I+E+                     +++     + L
Sbjct: 1778 AIAQSGAKDLHELHHAPKLQALRDILEECGIGVPAAAESSASPEGGHHRVLIFAQLKNFL 1837

Query: 82   ARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              ++K                     DK    ++ +N +  I +L       G GLNL  
Sbjct: 1838 DIIEKDLFQTHMKGVTYLRLDGSVESDKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLT- 1896

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +VF    W+     Q ++R       + G KR V V+ LI + T++E ++   R K
Sbjct: 1897 AADTVVFMEHDWNPMRDLQAMDR-----AHRLGQKRVVNVHRLIMRGTLEEKIMSLQRFK 1951

Query: 188  STIQDLLLNA 197
             ++ + ++NA
Sbjct: 1952 ISVANTVINA 1961


>gi|172087300|ref|XP_001913192.1| TBP-associated factor 172 [Oikopleura dioica]
 gi|48994300|gb|AAT47874.1| TBP-associated factor 172 [Oikopleura dioica]
          Length = 1665

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KALEVIIEK--- 65
             D  G +I     A K     QL                H   I    K++  IIE+   
Sbjct: 1405 LDRNGSSIRDIEHAPKIKALKQLLTECGIGQRNGSVVSEHRALIFCQHKSMLDIIERDLF 1464

Query: 66   -ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
             +N  P +          RL  + P G         +  +N +  I +L       G GL
Sbjct: 1465 KSNQLPSVSFS-------RLDGSVPAG----ARHGIVSRFNRDPTIDVLLLTTKVGGLGL 1513

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G ++++F    W+ +   Q ++R       + G K+ V VY LI +NT++E ++  
Sbjct: 1514 NLT-GADVVIFVEHDWNPQMDLQAMDR-----AHRIGQKKTVNVYRLITRNTVEEKIMGL 1567

Query: 184  LRTKSTIQDLLLNA 197
             + K +I + L++ 
Sbjct: 1568 QKFKLSIANSLVSG 1581


>gi|238879929|gb|EEQ43567.1| hypothetical protein CAWG_01805 [Candida albicans WO-1]
          Length = 1388

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++         I++ +     +   ++                T++     
Sbjct: 1236 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1295

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+     Q ++R       + 
Sbjct: 1296 VQAWQTNPEIFIFMLSTRAGGLGLNLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRI 1349

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++
Sbjct: 1350 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1385


>gi|145353082|ref|XP_001420858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581093|gb|ABO99151.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 522

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 30/212 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-----EEKHWKEV---HDEKI 56
              ++    +   +N +  N  S  ++  +  N    +      E+    E       K+
Sbjct: 269 QSLEKATKGEGGADNFQKLN--SLLMQLRKCCNHPFLFTGTDVPEDGVPIEDLISASGKL 326

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQEW 104
             L+ +++K       +++   F S L  LQ          A   G T   +    I  +
Sbjct: 327 AVLDRMLQKLKEGGHRVVLFSQFTSMLDILQDFLTLRGYTYARLDGSTNRVQRSIDIAAF 386

Query: 105 NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N    P+        + G G+NLQ   +  + F   W+ +   Q + R+      + G K
Sbjct: 387 NRPDSPMFAFLLSTRAGGLGVNLQT-ADTCILFDSDWNPQVDLQAMARV-----HRIGQK 440

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + V +Y L+   T++E + QR   K  +  ++
Sbjct: 441 KMVHIYRLVTAGTVEERMTQRAEKKLFLDQMV 472


>gi|168053884|ref|XP_001779364.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162669280|gb|EDQ55871.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 719

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
                +   K +AL  ++ K        ++   + S L  L+ A            G T 
Sbjct: 533 DDDHALASAKCQALARLLPKLQQGGHRTLIFSQWTSMLDILEWALDVMGFSYTRLDGSTQ 592

Query: 95  DKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +  T+  +  N+  I +      + G GLNL  G + ++   L ++ +  +Q  +R  
Sbjct: 593 VSERQTLVDEFNNDPSIFVFLLSTRAGGQGLNLT-GADTVILHDLDFNPQMDRQAEDRC- 650

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V +Y L+ ++T+DE + +  + K  +   +L  
Sbjct: 651 ----HRIGQSKPVTIYRLVTKDTVDESIYKIAQQKLVLDAAVLEG 691


>gi|261335089|emb|CBH18083.1| ATP-dependent helicase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1211

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ L+  +++       +++   F   L  L++                  ++    + 
Sbjct: 841 KLQFLKHCLKQLRREGHRMLIFTQFVHMLNILERFLALIGLPYLRIDGSTQPERRQAYVD 900

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE + I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 901 WFNEDERITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 954

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V +Y LI+++T++E +LQ+ R +  + ++++  
Sbjct: 955 TKPVTIYRLISEHTVEESILQKARERKKLNNVVIRG 990


>gi|68491912|ref|XP_710254.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|68491929|ref|XP_710247.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|74679547|sp|Q59KI4|INO80_CANAL RecName: Full=Putative DNA helicase INO80
 gi|46431413|gb|EAK90982.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|46431421|gb|EAK90989.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
          Length = 1387

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  L+ ++         I++ +     +   ++                T++     
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1294

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+     Q ++R       + 
Sbjct: 1295 VQAWQTNPEIFIFMLSTRAGGLGLNLT-SADTVIFYDSDWNPTIDSQAMDR-----AHRI 1348

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++
Sbjct: 1349 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384


>gi|328864923|gb|EGG13309.1| DEAD-box RNA helicase [Dictyostelium fasciculatum]
          Length = 1558

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 24/173 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRT-------- 93
             +WK     K+ +L   ++K +        +V   + S L  ++    Q           
Sbjct: 1385 DNWK--SSTKVDSLMSELDKVHRKDSDAKSLVFSQWTSMLDLIEIPLQQAGIGYVRLDGK 1442

Query: 94   --LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +    I+++  EG I +      + G GLNL    + +     WW+    +Q I+R
Sbjct: 1443 LAQKQREANIKKFKEEGSIKVFLISMKAGGLGLNLVVASH-VFLLDPWWNPATEEQAIDR 1501

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            +      + G  + V V   + +N+I+E +L+  + K  +    L  +KK+  
Sbjct: 1502 V-----YRIGQNKNVNVTRFVIKNSIEERILKLQQNKKNLAQDTLQ-MKKQIR 1548


>gi|74025142|ref|XP_829137.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834523|gb|EAN80025.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 1211

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ L+  +++       +++   F   L  L++                  ++    + 
Sbjct: 841 KLQFLKHCLKQLRREGHRMLIFTQFVHMLNILERFLALIGLPYLRIDGSTQPERRQAYVD 900

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE + I  +     S G GLNL  G + ++F+   W+     Q  +R       + G 
Sbjct: 901 WFNEDERITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPTMDLQAQDRC-----HRIGQ 954

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V +Y LI+++T++E +LQ+ R +  + ++++  
Sbjct: 955 TKPVTIYRLISEHTVEESILQKARERKKLNNVVIRG 990


>gi|299751759|ref|XP_002911684.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
 gi|298409521|gb|EFI28190.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
          Length = 1055

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 22/193 (11%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
             +       A        +  GA   D     K +   K   L+ I        ++V  
Sbjct: 684 GDKESSCLERAGVKEALRLMPEGAQVSDMTLSGKLIVLAK--MLKDIRNNTEEKCVVV-S 740

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHG 122
           HF S L  L+                    K    +  +N+       +      + G G
Sbjct: 741 HFTSTLNILEAFCQQAGYSFYRLDGQTPQQKRQEYVNAFNKSSQRGGFVFLLSSKAGGVG 800

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL  GG+ L      W+     Q + R       + G KR VF+Y L+   TIDE + Q
Sbjct: 801 INL-IGGSRLFLIDSDWNPSHDLQAMARC-----HRDGQKRPVFIYRLVTAGTIDEKIFQ 854

Query: 183 RLRTKSTIQDLLL 195
           R  TK  +   L+
Sbjct: 855 RQITKLGLSASLI 867


>gi|224004374|ref|XP_002295838.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585870|gb|ACI64555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 153

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 20/139 (14%)

Query: 72  IVAYHFNSDLA------------RLQKAFPQGRTL-DKDPCTIQEWNEGK-IPLLFAHPA 117
           ++   F   L              L+     G+   ++    ++ +N    I +L     
Sbjct: 3   LIFAQFTQSLDVVERFLFEPHMPSLEYLRLDGKVPSNRRSAIVERFNHDDNIKVLLLTTK 62

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G GLNL  G + ++F    W+     Q ++R       + G  + V VY LI  +TI+
Sbjct: 63  VGGLGLNLT-GADKVIFLEPDWNPFVDLQAMDR-----AHRIGQTKTVNVYRLITTDTIE 116

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +++  + K T  D ++N
Sbjct: 117 EKIMKLQQRKQTTSDAVVN 135


>gi|295707193|ref|YP_003600268.1| SNF2 family helicase [Bacillus megaterium DSM 319]
 gi|294804852|gb|ADF41918.1| SNF2 family helicase [Bacillus megaterium DSM 319]
          Length = 876

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  + +  + + +              K   L N    Y +E   K+      K + 
Sbjct: 650 LYQELVQGMLQETEEKTGFERKGIILQTLNKLKLLCNHPALYLKESAAKQTVRRSHKSEK 709

Query: 59  LEVIIEK--ANAAPIIVAYHFN---SDLAR-LQKAFPQGRT-------LDKDPCTIQEWN 105
           +  ++E         ++   +      L R L+K   +           ++    + ++ 
Sbjct: 710 IIELVESIRTQQESCLIFTQYIETGLMLQRTLEKEINEPVLFLHGSLSKEQRDEMVAQFQ 769

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    N ++ F  WW+     Q  +R       + G  + V
Sbjct: 770 ARNKAIFILSLRAGGTGLNLT-AANHVIHFDRWWNPAVENQATDR-----AHRIGQNKFV 823

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + TI+E + + +  K  + + L+  
Sbjct: 824 HVHKFITRGTIEEKIDEVINQKQHLNNELIQG 855


>gi|302853754|ref|XP_002958390.1| hypothetical protein VOLCADRAFT_99672 [Volvox carteri f.
           nagariensis]
 gi|300256270|gb|EFJ40540.1| hypothetical protein VOLCADRAFT_99672 [Volvox carteri f.
           nagariensis]
          Length = 854

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 27/204 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----KIKALEVIIEK 65
           +L  D  G+  EA    + T +     + +      K +          K++ L +++  
Sbjct: 478 DLLLDPSGDAGEATAEGANTGR---TCSSSCLPSFSKQFTATGSHQAAGKMQVLSLLLSA 534

Query: 66  --ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNE-GKIPL 111
             A     +V     + L  + +               G +++     +  +N+ G   +
Sbjct: 535 IAARGERCVVVSTSTATLDLVGQLVCKAQGLTTVRIDGGTSVEGRQTVVDNFNKLGMGQV 594

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL  G   LV +   W+    QQ + RI      + G  +  FVY L+
Sbjct: 595 FLLSTRAGGAGLNL-VGACHLVLYDSDWNPAMDQQAMARIW-----RDGQTKPCFVYRLL 648

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
              TI+E V QR   K+ +    +
Sbjct: 649 TTGTIEEKVYQRQLMKADLASATV 672


>gi|25027819|ref|NP_737873.1| chromodomain-containing helicase [Corynebacterium efficiens YS-314]
 gi|259506209|ref|ZP_05749111.1| DNA/RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493102|dbj|BAC18073.1| putative chromodomain helicase [Corynebacterium efficiens YS-314]
 gi|259166186|gb|EEW50740.1| DNA/RNA helicase [Corynebacterium efficiens YS-314]
          Length = 1034

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVDDVQQQLSQRQGMSRKGLVLATITRIKQICNHPAHFLNDGSPLTLRGRHRSGKV 858

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
            +AL  +++ A      +++   + +    L                 G +       +  
Sbjct: 859  EALMDLLDDAVAQERRMLIFTQYTAFGQLLAPYLSDRLGVDIPFLHGGVSKLGRDRMVAR 918

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   P +     + G GLNL    +I+V    WW+     Q  +R       + G K
Sbjct: 919  FQAGDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQK 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              V VY +I   T++E +   L  K  +   ++
Sbjct: 973  NNVDVYKMITAGTMEESIQDILDGKMHLASAIV 1005


>gi|307203835|gb|EFN82771.1| DNA repair and recombination protein RAD54-like [Harpegnathos
           saltator]
          Length = 679

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  L   I+      I++  ++   L   +K                T+ K    +  +N
Sbjct: 439 LDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCHKRGYNYVRLDGTMTIKKRSKVVDNFN 498

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 499 SESSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 552

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             FVY  ++  TI+E + QR   K  +   +++
Sbjct: 553 PCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 585


>gi|255561731|ref|XP_002521875.1| ATP binding protein, putative [Ricinus communis]
 gi|223538913|gb|EEF40511.1| ATP binding protein, putative [Ricinus communis]
          Length = 756

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K +AL  ++ +   +   +++   + S L  L+          +       + +    
Sbjct: 580 SAKCRALAELLPELRRDGHKVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTPVTERQTI 639

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N    I        + G GLNL  G + +V   + ++ +  +Q  +R       + 
Sbjct: 640 VDAFNNDTSIFACLLSTRAGGQGLNLT-GADTVVIHDMDFNPQIDRQAEDRC-----HRI 693

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +Y L+ + T+DE + +  + K T+   +L +
Sbjct: 694 GQTKPVTIYRLVTKGTVDENIYEIAKRKLTLDAAVLES 731


>gi|240952196|ref|XP_002399349.1| helicase, putative [Ixodes scapularis]
 gi|215490555|gb|EEC00198.1| helicase, putative [Ixodes scapularis]
          Length = 624

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARL---------QKAFPQGRTL--DKDP 98
              K++ L+ ++ +       +++       L  L         +     GRT   D+  
Sbjct: 392 ASGKLRLLDCMLPELRRRKHKVLLFSQMTRVLDILEDYCHLRHFRHCRLDGRTKVEDRQL 451

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+    +      + G G+NL  GG+ +V F   W+ +   Q ++R       +
Sbjct: 452 QMHLFNNDPSYFVFLLSTRAGGLGINLT-GGDTVVLFDSDWNPQCDLQAMDRC-----HR 505

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R V VY L+ + T+++ +++R   K  ++ +++ 
Sbjct: 506 IGQTRPVVVYRLVTRGTVEQRMVERASAKRKLEKIIMQ 543


>gi|330803641|ref|XP_003289812.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
 gi|325080071|gb|EGC33642.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
          Length = 731

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQ 102
           K+  +E +I++       +++  ++   L    RL K             + D     + 
Sbjct: 382 KLLFVESLIKQLKSVGEKLVLVSNYTQTLDVFERLCKKLSTDFLRLDGSVSSDTRQSLVD 441

Query: 103 EWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++N     K  +      + G G+NL  GGN LV +   W+     Q +ER+      + 
Sbjct: 442 KFNDQSNKKYQIFLLSAKAGGVGINL-IGGNHLVLYDPDWNPAIDIQAMERVW-----RE 495

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + VF+Y L +  TI+E + QR   K +I + +++
Sbjct: 496 GQNKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVD 532


>gi|157870556|ref|XP_001683828.1| DNA repair protein [Leishmania major strain Friedlin]
 gi|68126895|emb|CAJ04924.1| putative DNA repair protein [Leishmania major strain Friedlin]
          Length = 1092

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 20/162 (12%)

Query: 49   KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDK 96
            K +H  K+ A+   IE+      ++V   F S L  L + + Q R           TL +
Sbjct: 919  KPLHGTKLDAIANYIEEVPKDEKVVVFSQFGSMLD-LTQYWLQRRSIRAVKLCGSLTLTQ 977

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +Q + ++  + ++     + G GLNLQ   N +V    WW+     Q ++R     
Sbjct: 978  RQSVLQAFLHDQNVRVILISLKAGGEGLNLQV-ANHVVLTDPWWNPAVEMQAVQR----- 1031

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1032 AHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|330443433|ref|NP_009629.4| Rdh54p [Saccharomyces cerevisiae S288c]
 gi|329136720|tpg|DAA07193.2| TPA: Rdh54p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K+K L  ++E   K     ++V  ++   L  ++                   
Sbjct: 658 SRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 717

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 718 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 774

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 775 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 813


>gi|290878090|emb|CBK39149.1| Rdh54p [Saccharomyces cerevisiae EC1118]
          Length = 924

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K+K L  ++E   K     ++V  ++   L  ++                   
Sbjct: 624 SRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 683

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 684 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 740

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 741 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 779


>gi|292630874|sp|C7GQI8|RDH54_YEAS2 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|256271911|gb|EEU06936.1| Rdh54p [Saccharomyces cerevisiae JAY291]
          Length = 924

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K+K L  ++E   K     ++V  ++   L  ++                   
Sbjct: 624 SRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 683

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 684 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 740

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 741 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 779


>gi|320166126|gb|EFW43025.1| lymphoid specific helicase variant4 [Capsaspora owczarzaki ATCC
           30864]
          Length = 835

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
           K++ L+ ++         +++       L  LQ  F              +L      I+
Sbjct: 629 KLRLLDELLPALRRKGHKVLIFSQMTRMLDLLQDYFELRNTAVCRLDGAVSLADRQEQIR 688

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N + ++        + G G+NL    + ++ +   W+ +   Q  +R       + G 
Sbjct: 689 SFNSDPEVFAFLLSTRAGGLGINL-IAADTVILYDSDWNPQADLQAQDRC-----HRIGQ 742

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L+  NT+++ +++R   K  ++ L++
Sbjct: 743 TKPVIVYRLVTANTVEQRIIERAMAKRKLEKLVI 776


>gi|255718473|ref|XP_002555517.1| KLTH0G11132p [Lachancea thermotolerans]
 gi|238936901|emb|CAR25080.1| KLTH0G11132p [Lachancea thermotolerans]
          Length = 1339

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+K L+ ++         +++ +     +  +++                 L+     
Sbjct: 1174 STKLKKLDELLVDLKKGDHRVLIYFQMTKMMDLMEEYLTYRQYKHIRLDGSSKLEDRRDL 1233

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W  +  I +      + G G+NL    + ++F+   W+     Q ++R       + 
Sbjct: 1234 VHDWQTKPDIFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----AHRL 1287

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1288 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEG 1325


>gi|224003427|ref|XP_002291385.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973161|gb|EED91492.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 352

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 39/223 (17%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV--YYDEEKHWKEVHDEKIKA 58
           MK+     R    +   +     +S       +QL    +  Y  +        D K   
Sbjct: 134 MKEIDSIVRLSEAENNPDAEAGRSSVVLRNLVMQLRKICLHPYLFDFAE----SDIKSTT 189

Query: 59  LEVIIEKA---------------NAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           LE +I  +               N     +   F S L  L+            F  G  
Sbjct: 190 LEELIATSGKLAVLDKLLISLFKNGNRTCIFSQFTSMLNILEDYCVLRGWKYVRFDGGTP 249

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    I ++N    K  +      S G G+NLQ   +  + +   W+ +   Q + R+
Sbjct: 250 RAQRNHIINQFNAPGSKDFIFLMSTKSGGLGINLQT-ADTCILYDSDWNPQPDLQAMARV 308

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 + G K+ V VY L++  TI+E V++R   K  +  ++
Sbjct: 309 -----HRIGQKKVVHVYRLLSAGTIEERVVERAEKKLYLDKMV 346


>gi|307174075|gb|EFN64762.1| DNA repair and recombination protein RAD54-like [Camponotus
           floridanus]
          Length = 682

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  L   I+      I++  ++   L   +K                T+ K    ++ +N
Sbjct: 442 LDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCNKRSYNYVRLDGSMTIKKRSKVVENFN 501

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 502 SDTSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 555

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             FVY  ++  TI+E + QR   K  +   +++
Sbjct: 556 TCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 588


>gi|302309194|ref|NP_986455.2| AGL212Wp [Ashbya gossypii ATCC 10895]
 gi|299788244|gb|AAS54279.2| AGL212Wp [Ashbya gossypii ATCC 10895]
          Length = 903

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
           +  +     K+K L  ++ +    ++   ++V  ++   L  +                 
Sbjct: 608 RIAQSTTSGKLKVLMSLLHQIAHRSDNEKVVVISNYTQTLDIIGNLMSSASLSYLRLDGS 667

Query: 94  --LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +    + ++N  + I        S G GLNL  G + L+ F   W+     Q + R
Sbjct: 668 TPTKERDAIVNDFNRSQTIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSR 726

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I      + G K+  F+Y L+    IDE + QR   K+ +    L+
Sbjct: 727 I-----HRDGQKKPCFIYRLVTTGCIDEKIFQRQLMKNNLSKKFLD 767


>gi|242017030|ref|XP_002428996.1| lymphoid specific helicase, putative [Pediculus humanus corporis]
 gi|212513842|gb|EEB16258.1| lymphoid specific helicase, putative [Pediculus humanus corporis]
          Length = 806

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  L+ ++ K       +I+   F   L  L+                  + K    
Sbjct: 559 SGKMLVLDALLSKLKSRGHKVIIFSFFKVVLDILEDYVLLRDYQYSRLDGDLNIPKRNEE 618

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           IQ++ +  +I +      S G G+NL    + ++F+   W+   + Q  +R       + 
Sbjct: 619 IQKFMDNPEIFVFLITMRSGGLGINLT-AADTVIFYDSDWNPTINLQSQDRC-----HRI 672

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G  + V +Y L  + TIDE +++R   K  ++ ++L   K
Sbjct: 673 GQSKPVMIYRLCVKGTIDEKIIERANAKRRLEKMILQKGK 712


>gi|50311185|ref|XP_455616.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644752|emb|CAG98324.1| KLLA0F11814p [Kluyveromyces lactis]
          Length = 931

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 50  EVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQK---------AFPQGRTLDKD 97
           +    K++ L  ++ +        ++V  ++   L  ++          A   G T  K 
Sbjct: 631 KFTSGKLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKT 690

Query: 98  PCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I     N+  I +      S G GLNL  G + LV F   W+     Q + RI    
Sbjct: 691 RDQIVTSFNNDPSIFVFLLSAKSGGVGLNL-IGASRLVLFDNDWNPSIDLQAMSRI---- 745

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +R  F+Y L+    IDE +LQR   K  +    L++
Sbjct: 746 -HRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDS 786


>gi|304438573|ref|ZP_07398512.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368411|gb|EFM22097.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 819

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 22/165 (13%)

Query: 46  KHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGR 92
           +H       K    +     II++     +IV   F   L +L++          +  G 
Sbjct: 644 RHSTSCESCKYDLFKLYTPNIIKEH--KKLIVFCQFPKILKKLKRWCDSNHWSTFYIDGN 701

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    I  + + K  + F    + G GLNL      ++ +  WW+    +Q  +RI 
Sbjct: 702 TNNR-ERIISLFEQSKEGIFFISLKAGGVGLNLT-SAQFVIIYEPWWNPSAERQASDRI- 758

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + VF+Y+ I  +TI+E +++    K  I    + A
Sbjct: 759 ----YRIGQDKPVFIYHFIVNDTIEEKIIELQDKKKKIYSDFIAA 799


>gi|88809531|ref|ZP_01125039.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
 gi|88786750|gb|EAR17909.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
          Length = 1070

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 36/217 (16%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANG---AVYYDEEKHWKEVHDE 54
            Q+ LY       ++A   A              +  Q+ N    A+  +           
Sbjct: 832  QKSLYAKTVENTLDAIARAPRGKRHGQVLGLLTRLKQICNHPALALKEEVAGDDFLQRSV 891

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCT 100
            K++ LE I+E+  A     ++   F ++   L + + Q R            +  +    
Sbjct: 892  KLQRLEEILEEVIAAGDRALLFTQF-AEWGHLLQGYLQRRWRSEVPFLSGSTSKGERQAM 950

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + E      L      + G GLNL    + +     WW+     Q  +R       +
Sbjct: 951  VDRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYR 1004

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1005 IGQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDIV 1041


>gi|153791718|ref|NP_001093467.1| probable global transcription activator SNF2L1 [Danio rerio]
 gi|148725854|emb|CAN88075.1| novel protein similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 5
           (smarca5) [Danio rerio]
 gi|148726278|emb|CAN88255.1| novel protein similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 5
           (smarca5) [Danio rerio]
          Length = 1036

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 372 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 431

Query: 44  ---EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AF 88
                     ++  K+ AL+ ++   +   + +++       L  L+             
Sbjct: 432 PPYTTDTHLVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRL 491

Query: 89  PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 492 DGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 550

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 551 AMDR-----AHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQ 595


>gi|66808133|ref|XP_637789.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60466223|gb|EAL64285.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2005

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN- 105
            E I E  N   +++     S L  ++                       K    + ++N 
Sbjct: 1771 ETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQFNS 1830

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I +L       G GLNL  G + ++F    W+  +  Q ++R       + G K+ V
Sbjct: 1831 DPTIDVLLLTTHVGGLGLNLT-GADTVIFLEHDWNPMKDLQAMDR-----AHRIGQKKVV 1884

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VY LI   T++E ++   + K  I + ++N
Sbjct: 1885 NVYRLITSGTLEEKIMGLQKFKLNIANTVIN 1915


>gi|33866892|ref|NP_898451.1| SNF2 helicase-like protein [Synechococcus sp. WH 8102]
 gi|33639493|emb|CAE08877.1| SNF2 helicase homolog [Synechococcus sp. WH 8102]
          Length = 1063

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEK--ANAAPIIVAYHFN-- 78
                 +  Q+ N       E    +       K++ LE I+++        ++   F   
Sbjct: 858  LGLLTRLKQICNHPALALSENAVDDGFLGRSAKLQRLEEILDEVIEAGDRALLFTQFAEW 917

Query: 79   -SDLAR-LQKAFP-------QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
               L   +Q+ +         G   ++    +  + E      L      + G GLNL  
Sbjct: 918  GHLLQSWMQQRWKADVPFLHGGTRKNERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTR 977

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +     WW+     Q  +R       + G    V V+  I   +++E + + +R K
Sbjct: 978  ASH-VFHIDRWWNPAVENQATDR-----AYRIGQTNRVMVHKFITSGSVEEKIDRMIREK 1031

Query: 188  STIQDLLL 195
            S + + ++
Sbjct: 1032 SRLAEDVI 1039


>gi|302824179|ref|XP_002993735.1| hypothetical protein SELMODRAFT_187576 [Selaginella moellendorffii]
 gi|300138459|gb|EFJ05227.1| hypothetical protein SELMODRAFT_187576 [Selaginella moellendorffii]
          Length = 1827

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 60/251 (23%)

Query: 1    MKQYHKF--------QRELYCDLQGENIEAFNSAS------KTVKCLQLANGAVYYDEEK 46
            +K Y KF           +     G   +  N+++            ++ +  V   +  
Sbjct: 1504 LKLYEKFAFSQAKKNVATMVEAYGGNADDRGNTSAPTHVFQALQYLRKVCSHPVLVLDGP 1563

Query: 47   HWKEVHDE-------------KIKALEVIIEK-------------ANAAPIIVAYHFNSD 80
              + V++E             K+ AL  I+E+                  +++       
Sbjct: 1564 LSENVNEENGSMDIHDIQNSPKLLALRDILEECGIGQCNGDNSTAGGQHRVLIFAQLKGF 1623

Query: 81   LARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  ++K                    + K    ++ +N +  I +L       G GLNL 
Sbjct: 1624 LDIIEKDLFQTHMKSVTYMRLDGSVDVSKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT 1683

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +VF    W+     Q ++R       + G +R V V+ LI + T++E V+   R 
Sbjct: 1684 -AADTVVFMEHDWNPMRDLQAMDR-----SHRLGQRRVVNVHRLIMRGTLEEKVMNLQRF 1737

Query: 187  KSTIQDLLLNA 197
            K +I + ++NA
Sbjct: 1738 KLSIANTVINA 1748


>gi|56750675|ref|YP_171376.1| putative SNF2 helicase [Synechococcus elongatus PCC 6301]
 gi|56685634|dbj|BAD78856.1| putative SNF2 helicase [Synechococcus elongatus PCC 6301]
          Length = 1019

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
           +Y     E   +++            +   +  QL N      E+            K++
Sbjct: 781 RYQVLVNEALANIEASEGIQRRGQILALLTRLKQLCNHPSLLLEKPKLDPNFGDRSAKLQ 840

Query: 58  ALEVIIEKAN--AAPIIVAYHF----------NSDLARLQKAFPQGRTLDKDPCTI--QE 103
            L  ++ +        +V   F            +    +  F  G T   D   +  + 
Sbjct: 841 RLLEMLAELTDAGDRALVFTQFAGWGSLLQQFLQEQLGREVLFLSGSTKKGDRQQMVDRF 900

Query: 104 WNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N+ + P +      + G GLNL    N +  +  WW+     Q  +R       + G +
Sbjct: 901 QNDPQAPAIFILSLKAGGVGLNLTK-ANHVFHYDRWWNPAVENQATDR-----AFRIGQR 954

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R V V+  +   T++E + Q + +K  +   ++
Sbjct: 955 RNVQVHKFVCAGTLEEKIDQMIASKQALAQQIV 987


>gi|81299683|ref|YP_399891.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
 gi|81168564|gb|ABB56904.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
          Length = 1019

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
           +Y     E   +++            +   +  QL N      E+            K++
Sbjct: 781 RYQVLVNEALANIEASEGIQRRGQILALLTRLKQLCNHPSLLLEKPKLDPNFGDRSAKLQ 840

Query: 58  ALEVIIEKAN--AAPIIVAYHF----------NSDLARLQKAFPQGRTLDKDPCTI--QE 103
            L  ++ +        +V   F            +    +  F  G T   D   +  + 
Sbjct: 841 RLLEMLAELTDAGDRALVFTQFAGWGSLLQQFLQEQLGREVLFLSGSTKKGDRQQMVDRF 900

Query: 104 WNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N+ + P +      + G GLNL    N +  +  WW+     Q  +R       + G +
Sbjct: 901 QNDPQAPAIFILSLKAGGVGLNLTK-ANHVFHYDRWWNPAVENQATDR-----AFRIGQR 954

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R V V+  +   T++E + Q + +K  +   ++
Sbjct: 955 RNVQVHKFVCAGTLEEKIDQMIASKQALAQQIV 987


>gi|213625823|gb|AAI71410.1| Helicase, lymphoid-specific [Danio rerio]
 gi|213627472|gb|AAI71408.1| Helicase, lymphoid-specific [Danio rerio]
 gi|220677979|emb|CAX14759.1| helicase, lymphoid-specific [Danio rerio]
          Length = 853

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 631 GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 690

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY LI  NTI
Sbjct: 691 RAGGLGINLT-SADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLITANTI 744

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 745 DEKILERASAKRKLEKMVI 763


>gi|221117267|ref|XP_002154001.1| PREDICTED: similar to yeast Swi2/Snf2-Like family member (ssl-1),
            partial [Hydra magnipapillata]
          Length = 2164

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 27/183 (14%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
            KT+  +Q          E    +    K++AL  ++         +++       L  L+
Sbjct: 1247 KTMSLIQF--------PETRLVQYDCGKLQALNDLLRHLKIGKHRVLIFTQMTKMLDVLE 1298

Query: 86   KAF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +             G T  +    + + +N + KI +      S G G+NL  G + +VF
Sbjct: 1299 RFLNYHGYIYLRLDGTTKVEQRQILMERFNQDNKIFIFILSTRSGGLGINLT-GADTVVF 1357

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+     Q  +R       + G  R V +Y LI++ T++E +L++ + K  + ++ 
Sbjct: 1358 YDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLISERTVEENILKKAQQKRLLGNIA 1412

Query: 195  LNA 197
            +  
Sbjct: 1413 IEG 1415


>gi|332024911|gb|EGI65099.1| DNA repair and recombination protein RAD54-like protein [Acromyrmex
           echinatior]
          Length = 681

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  L   I+      I++  ++   L   +K                T+ K    +  +N
Sbjct: 441 LDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCHKRSYNYVRLDGTMTIKKRAKVVDNFN 500

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 501 SDSSNDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 554

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             FVY  ++  TI+E + QR   K  +   +++
Sbjct: 555 PCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 587


>gi|302822093|ref|XP_002992706.1| hypothetical protein SELMODRAFT_186944 [Selaginella moellendorffii]
 gi|300139447|gb|EFJ06187.1| hypothetical protein SELMODRAFT_186944 [Selaginella moellendorffii]
          Length = 1825

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 60/251 (23%)

Query: 1    MKQYHKF--------QRELYCDLQGENIEAFNSAS------KTVKCLQLANGAVYYDEEK 46
            +K Y KF           +     G   +  N+++            ++ +  V   +  
Sbjct: 1502 LKLYEKFAFSQAKKNVATMVEAYGGNADDRGNTSAPTHVFQALQYLRKVCSHPVLVLDGP 1561

Query: 47   HWKEVHDE-------------KIKALEVIIEK-------------ANAAPIIVAYHFNSD 80
              + V++E             K+ AL  I+E+                  +++       
Sbjct: 1562 LSENVNEENGSMDIHDIQNSPKLLALRDILEECGIGQCNGDNSTAGGQHRVLIFAQLKGF 1621

Query: 81   LARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  ++K                    + K    ++ +N +  I +L       G GLNL 
Sbjct: 1622 LDIIEKDLFQTHMKSVTYMRLDGSVDVSKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT 1681

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +VF    W+     Q ++R       + G +R V V+ LI + T++E V+   R 
Sbjct: 1682 -AADTVVFMEHDWNPMRDLQAMDR-----SHRLGQRRVVNVHRLIMRGTLEEKVMNLQRF 1735

Query: 187  KSTIQDLLLNA 197
            K +I + ++NA
Sbjct: 1736 KLSIANTVINA 1746


>gi|47575794|ref|NP_001001241.1| RAD54-like [Xenopus (Silurana) tropicalis]
 gi|45708870|gb|AAH67986.1| RAD54-like (S. cerevisiae) [Xenopus (Silurana) tropicalis]
          Length = 742

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
             K  +     K+  L+ I+      ++  +++  ++   L   +K              
Sbjct: 484 STKSVEPQLSGKMLVLDYILAVTRSTSSDKVVLVSNYTQTLDLFEKLCRTRRYLYVRLDG 543

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 544 TMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 602

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  F+Y L++  TI+E + QR   K  +   +++
Sbjct: 603 ARVW-----RDGQKKTCFIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 645


>gi|328769968|gb|EGF80011.1| hypothetical protein BATDEDRAFT_35332 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 2044

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
               +G +I    ++ K +   QL    G    +   H +      +          +   
Sbjct: 1775 LKAEGRSINDVENSPKIMALQQLLKDCGIGMTNASNHSEGSSSMVLTDSVAGTSATSPHR 1834

Query: 71   IIVAYHFNSDLARL-----QKAFP-------QGRT--LDKDPCTIQEWNEGKIPLLFAHP 116
            +++       L  +     +K  P        G T  + +     +   +  I +L    
Sbjct: 1835 VLIFAQVKPMLDIIENDLFKKHMPSVTYMRLDGTTDGIKRHELVTKFNQDPSIDVLLLTT 1894

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
               G GLNL  G + ++F    W+  +  Q ++R+      + G KR V VY LI + T+
Sbjct: 1895 HVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDRV-----HRIGQKRVVNVYRLITRGTL 1948

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E ++   + K  +   ++N
Sbjct: 1949 EEKIMGLQKFKLNLASSVIN 1968


>gi|149174125|ref|ZP_01852753.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
 gi|148847105|gb|EDL61440.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
          Length = 642

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 27/206 (13%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +++    L   G++I   +     ++  Q+ N                 K+  LE
Sbjct: 407 AYETAEKDGVIQLNEMGDSITVQHVFELVLRLKQITNF--------DPVTGDSCKLDRLE 458

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN-EGKI 109
             +E+  A+    I+   +   L  + K   +  TL         +    + ++  +   
Sbjct: 459 ADMEEIAASGGKAILFSQWTKPLDFMAKRLERFGTLVYHGGIPTKQREPILDQFKHDPDS 518

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            LL     +   GLNLQ+ G  +  F  WW+     Q I R       + G K  V V  
Sbjct: 519 HLLLMSYGTGAVGLNLQFAG-YVFLFDRWWNPAIEDQAINR-----AHRIGQKTQVIVTK 572

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  NTI+E +   L  K  +   +L
Sbjct: 573 FVCNNTIEERIDMVLEQKRELFRSIL 598


>gi|294656433|ref|XP_002770263.1| DEHA2D05456p [Debaryomyces hansenii CBS767]
 gi|199431470|emb|CAR65619.1| DEHA2D05456p [Debaryomyces hansenii]
          Length = 838

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 19/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--E 106
           L  I  + N   +++  ++   L  ++K                 ++K    +  +N  E
Sbjct: 604 LHKIRTETNDKIVLI-SNYTQTLDLIEKMCRYKKYANVRLDGTMNINKRQKLVDRFNDPE 662

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   +      + G G+NL  G N L+     W+    QQ + R+      + G K+  F
Sbjct: 663 GSEFIFLLSSKAGGCGINL-IGANRLILIDPDWNPASDQQALARVW-----RDGQKKDCF 716

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +Y  I+  TI+E + QR   K ++   +++
Sbjct: 717 IYRFISTGTIEEKIFQRQSMKLSLSSCVVD 746


>gi|164425176|ref|XP_962568.2| hypothetical protein NCU06306 [Neurospora crassa OR74A]
 gi|157070819|gb|EAA33332.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 45/224 (20%)

Query: 9   RELYCDLQGENIEAFNSASKTVK----------CLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +++  DL  E I+   +     K           +QL           +     D+ I  
Sbjct: 550 QDMEVDLDAEEIKRAQTLDLAKKEISNKKLGNPLMQLRLVCNSPHNFYNPWSNSDQPID- 608

Query: 59  LEVIIEKAN---------------AAPIIVAYHFNSDLARLQK-----------AFPQGR 92
            E I+  +                   I++   F + L  L++               G 
Sbjct: 609 -ESIVTASGKMLLLDRLLPALFERGHKILIFSQFKTQLDILEEYCRELRSWDVCRIDGGV 667

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D     I+++N +  + +      + G G+NL    + ++ F   W+ ++  Q  +R 
Sbjct: 668 AQDDRRAQIEQFNTDPDVKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQDLQAQDRC 726

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 + G  R V VY L  + T++E +L     K  ++ L++
Sbjct: 727 -----HRIGQTRPVVVYRLATKGTVEEELLMSADAKRRLEKLVI 765


>gi|79748111|ref|NP_001032178.1| helicase, lymphoid-specific [Danio rerio]
 gi|52001265|gb|AAU21503.1| PASG [Danio rerio]
          Length = 853

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 631 GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 690

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V V+ LI  NTI
Sbjct: 691 RAGGLGINLT-SADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVHRLITANTI 744

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 745 DEKILERASAKRKLEKMVI 763


>gi|167527295|ref|XP_001747980.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773729|gb|EDQ87367.1| predicted protein [Monosiga brevicollis MX1]
          Length = 760

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL---ARL--QKAFPQGRT-----LDKDPCTIQEWN 105
           + A+  +++      +++  ++   L    RL  Q+ +   R      + K    +  +N
Sbjct: 510 VDAMLAMLKSTTDEKVVLISNYTQTLDLFERLCRQRRYKYVRLDGTMSIKKRQKVVDHFN 569

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G G+NL  G + L+     W+     Q + R     QR+     
Sbjct: 570 APDSDDFIFMLSSKAGGCGINL-IGASRLILTDPDWNPASDAQALARCWRDGQRRI---- 624

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +VY L+A  TI+E +L R   K+ + D +++  +    H
Sbjct: 625 -TYVYRLVATGTIEEKILARQAHKTALSDCVIDEAEDVQRH 664


>gi|159902591|ref|YP_001549935.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159887767|gb|ABX07981.1| Superfamily II DNA/RNA helicase, SNF2 family [Prochlorococcus marinus
            str. MIT 9211]
          Length = 1067

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            +     +  Q+ N      +EK+  +       K++ LE +++   A     ++   F  
Sbjct: 860  TLGLLTRLKQICNHPALALKEKNISDDFGIRSTKLQRLEELLDVIFATEDRALLFTQFAE 919

Query: 80   DLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQ 126
                LQ    +             R +D+     Q   + + P L      + G GLNL 
Sbjct: 920  WGHLLQAYLEKKWGHSILFLHGGTRKIDRQSMVDQFQEDPRGPKLFLLSLKAGGIGLNLT 979

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N ++    WW+     Q  +R       + G K +V V+  IA  +++E + Q +  
Sbjct: 980  R-ANHVLHIDRWWNPAVENQATDR-----AYRIGQKNSVMVHKFIATGSVEEKIDQMITE 1033

Query: 187  KSTIQDLLLNA 197
            KS + + ++ A
Sbjct: 1034 KSKLAENIIGA 1044


>gi|261334500|emb|CBH17494.1| DNA repair and recombination protein RAD54,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 1037

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
            L+ +    +   +++  +F   L  +       +           + +    +  +N  
Sbjct: 707 MLDELCSNGDHDKLVIVSNFTQTLDVIAAMCKTKKISFFQLDGSMPIKRRQEVVDRFNVP 766

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 767 NSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 820

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  +I+E + QR  +K  +   +++
Sbjct: 821 FIYRLLSTGSIEEKIYQRQVSKQGLSANVVD 851


>gi|71755407|ref|XP_828618.1| DNA repair/recombination protein RAD54 [Trypanosoma brucei TREU927]
 gi|70834004|gb|EAN79506.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           brucei]
          Length = 1037

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG 107
            L+ +    +   +++  +F   L  +       +           + +    +  +N  
Sbjct: 707 MLDELCSNGDHDKLVIVSNFTQTLDVIAAMCKTKKISFFQLDGSMPIKRRQEVVDRFNVP 766

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 767 NSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 820

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  +I+E + QR  +K  +   +++
Sbjct: 821 FIYRLLSTGSIEEKIYQRQVSKQGLSANVVD 851


>gi|302780671|ref|XP_002972110.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
 gi|300160409|gb|EFJ27027.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
          Length = 1011

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCTIQEWNEGK 108
           LE + +K N   ++V  ++   L        ++ +P  R      + K    +Q++N+  
Sbjct: 472 LENLRKKTNDRIVLV-SNYTQTLDLFAQLCRERNYPYVRLDGSTSIGKRQKLVQKFNDPS 530

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                      + G GLNL  GGN LV F   W+    +Q   R+      + G K+ V+
Sbjct: 531 QNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVY 584

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +Y  +A  TI+E V QR  +K  +Q ++    K E 
Sbjct: 585 IYRFLATGTIEEKVYQRQMSKEGLQKVISGDSKAEV 620


>gi|194207506|ref|XP_001915622.1| PREDICTED: similar to RAD54-like protein [Equus caballus]
          Length = 755

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
             K+  L+ I+     + N   ++V  ++   L   +K                ++ K  
Sbjct: 495 SGKMLVLDYILAVTRSRGNDKVVLV-SNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRA 553

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++ +N    P  +      + G GLNL  G N LV F   W+    +Q + R+     
Sbjct: 554 KVVERFNNPLSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW---- 608

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 609 -RDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 647


>gi|67969780|dbj|BAE01238.1| unnamed protein product [Macaca fascicularis]
          Length = 489

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 257 KVVLVSNYTRTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 316

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 317 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 370

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 371 EKIFQRQSHKKALSSCVVD 389


>gi|260577578|ref|ZP_05845517.1| DNA/RNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258604302|gb|EEW17540.1| DNA/RNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 1029

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y  F +++     L G    A N     VK  Q+ N   ++  +             K
Sbjct: 791 ALYETFIKDMEMRLQLPGGKRRA-NILGALVKIKQICNHPAHFAGDGSGILADGKHRSAK 849

Query: 56  IKALEVIIEKA--NAAPIIVAYHF----NSDLARLQKAFP-------QGRTLDKDPCTIQ 102
           I+ +  I ++A      +++   F          LQ  F         G +  K    ++
Sbjct: 850 IERIFEITDQALEQGKKVLMFTQFPTFGKMLAPELQSTFGVEVPVLHGGLSRAKRTQMVR 909

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++      P++     + G G+ L    ++++    WW+     Q  +R       + G 
Sbjct: 910 DFQSVDGPPIMILSVRAGGTGITLTE-ASVVIHIDRWWNPAVEDQATDR-----AYRIGQ 963

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V VY L+ Q TIDE +   + +K  +   ++ A
Sbjct: 964 NKSVEVYKLVVQGTIDERIHDIIMSKRELAGDIVGA 999


>gi|303390601|ref|XP_003073531.1| DNA repair and recombination protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302678|gb|ADM12171.1| DNA repair and recombination protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 688

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 17/197 (8%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
           L+   + +  E  +  +   K  +   G +  +E ++       KIK L  +++K  +  
Sbjct: 417 LFIPRKEDGSEDLSEEASGEKNNEETLGLLKKEESQYGLVSSSCKIKILMDLLKKWKSEG 476

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCT--------IQEWNEGK-IPLLFAHPASC 119
             ++V       L  ++K   +   L  D  T        +  +N+   I +        
Sbjct: 477 NKVLVFSQTIRMLDIIEKCVEKYAYLRMDGRTSTSSRSSLVDRFNKDDSIFMFLLTTKVG 536

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G + +V +   W+     Q  ER       + G ++ V +Y  I ++TI+E 
Sbjct: 537 GLGLNLT-GASRIVIYDPDWNPSTDTQAKERAW-----RYGQRKGVEIYRFICKDTIEEK 590

Query: 180 VLQRLRTKSTIQDLLLN 196
           V Q+   K  +   +L+
Sbjct: 591 VYQKQIFKDLLGKKVLS 607


>gi|258576789|ref|XP_002542576.1| helicase SWR1 [Uncinocarpus reesii 1704]
 gi|237902842|gb|EEP77243.1| helicase SWR1 [Uncinocarpus reesii 1704]
          Length = 1614

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1270 PDKRLLQYDCGKLQQLDKLLRQLQAGGHRALIFTQMTKMLDILEQFLNVHGHRYLRLDGS 1329

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1330 TKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1388

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L+++ TI+  +L++   K  + D+++ 
Sbjct: 1389 C-----HRIGQTRDVHIYRLVSEYTIESNILRKANQKRMLDDVVIQ 1429


>gi|41055574|ref|NP_957438.1| DNA repair and recombination protein RAD54-like [Danio rerio]
 gi|28277973|gb|AAH46050.1| RAD54-like (S. cerevisiae) [Danio rerio]
          Length = 738

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 509 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 568

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 569 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIE 622

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +LQR   K  +   +++
Sbjct: 623 EKILQRQAHKKALSSCVVD 641


>gi|33239499|ref|NP_874441.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus subsp. marinus
            str. CCMP1375]
 gi|33237024|gb|AAP99093.1| Superfamily II DNA/RNA helicases, SNF2 family [Prochlorococcus
            marinus subsp. marinus str. CCMP1375]
          Length = 1062

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 26/190 (13%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEKANAA--PIIVAYHFNS 79
            +     +  Q+ N      +E   ++       K++ LE I+++   +    ++   F +
Sbjct: 853  TLGLLTRLKQICNHPAIALKETQVEKNFLLRSSKLQRLEEILQEVKESHDRALLFTQF-A 911

Query: 80   DLARLQKAFPQ------------GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNL 125
            +   L +A+ Q            G    K    I  + +      +      + G GLNL
Sbjct: 912  EWGHLLQAYLQTKWESEVPFLHGGTPKGKRQEMIDRFQDDPRGPNIFLLSLKAGGVGLNL 971

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                N +     WW+     Q  +R       + G K++V V+  I   TI+E + Q + 
Sbjct: 972  TR-ANHVFHIDRWWNPAVENQATDR-----AYRIGQKKSVIVHKFITTGTIEEKINQMIL 1025

Query: 186  TKSTIQDLLL 195
             K+ + + ++
Sbjct: 1026 EKTELAENIV 1035


>gi|195539537|ref|NP_001124238.1| DNA repair and recombination protein RAD54-like [Bos taurus]
 gi|119935983|gb|ABM06051.1| RAD54-like protein [Bos taurus]
 gi|296488837|gb|DAA30950.1| RAD54-like [Bos taurus]
          Length = 749

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 516 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSK 575

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 576 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 629

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 630 EKIFQRQSHKKALSSCVVD 648


>gi|194036393|ref|XP_001929392.1| PREDICTED: transcription termination factor 2-like [Sus scrofa]
          Length = 1166

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCT-IQ 102
               +  LE I   + +   ++   + S L          R+  A   G    K     ++
Sbjct: 998  SSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRMDLVE 1057

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  G   ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1058 AFNSSGGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQASDRI-----YRVGQ 1111

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1112 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSG 1147


>gi|238060401|ref|ZP_04605110.1| non-specific serine/threonine protein kinase [Micromonospora sp.
           ATCC 39149]
 gi|237882212|gb|EEP71040.1| non-specific serine/threonine protein kinase [Micromonospora sp.
           ATCC 39149]
          Length = 795

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++  + IE      +   +  Q+ N       +         K+  LE
Sbjct: 565 LYQAVVDDMLARIESSDGIERRGLVLAAMTRLKQVCNHPAQLLRDGSALTGRSGKLARLE 624

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--GRTL----------DKDPCTIQEWNE 106
            I+++  A     ++   +      L+       GR +          D+D    +  ++
Sbjct: 625 EILDEVLAAGEKALLFTQYAEFGGMLRGHLSARFGREVLFLHGGVGKADRDAMVTRFQSD 684

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              PL      + G GL L    N +V    WW+     Q  +R       + G +R V 
Sbjct: 685 AGPPLFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQRRRVQ 738

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V   +   T++E V   +  K ++   ++
Sbjct: 739 VRKFVCAGTLEEKVAAMIAEKRSLAASVV 767


>gi|46111317|ref|XP_382716.1| hypothetical protein FG02540.1 [Gibberella zeae PH-1]
          Length = 1163

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
             K++  + +++K    N    ++       L  ++K                 +D+   
Sbjct: 731 SAKLQLTKDLLQKVMIPNGHKTLLFSQGKQMLDIIEKCIGECGISYVRMDGETPVDRRQT 790

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++NE   I +      + G G NL  G + ++ F   W+     Q  ER       +
Sbjct: 791 MIDKFNESPDIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPSTDLQARERAW-----R 844

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 845 LGQKKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 887


>gi|296207850|ref|XP_002750833.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Callithrix jacchus]
          Length = 746

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 514 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 573

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 574 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 627

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 628 EKIFQRQSHKKALSSCVVD 646


>gi|237785888|ref|YP_002906593.1| putative DNA/RNA helicase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758800|gb|ACR18050.1| putative DNA/RNA helicase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 1065

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 24/187 (12%)

Query: 27   SKTVKCLQLANG-AVYYDEEKHWKEVH---DEKIKALEVIIEKA--NAAPIIVAYHFNSD 80
                   Q+ N  A Y  ++  + +       K+   E ++++A      +++   F   
Sbjct: 833  KLLTGLKQICNHPAQYLGDDSPFLDGTHHRSGKVATAEPLVDEALQQGRKVLIFTQFVVF 892

Query: 81   LARLQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYG 128
               L+  F                  +    +  +N     P++     + G GLNL  G
Sbjct: 893  GNMLKTYFNNRYGIDVPFLNGSVERKERDRMVNTFNSPAGPPIMILSLRAGGTGLNLT-G 951

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             ++++    WW+     Q  +R       + G +  V VY LI++ TI+E +   +  K 
Sbjct: 952  ASVVIHMDRWWNPAVENQATDR-----AYRIGQEHDVSVYKLISKGTIEEKINDIIEGKL 1006

Query: 189  TIQDLLL 195
             +   ++
Sbjct: 1007 QLASAVV 1013


>gi|194386250|dbj|BAG59689.1| unnamed protein product [Homo sapiens]
          Length = 567

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 335 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 394

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 395 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 448

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 449 EKIFQRQSHKKALSSCVVD 467


>gi|178056748|ref|NP_001116655.1| DNA repair and recombination protein RAD54-like [Sus scrofa]
 gi|168084900|dbj|BAG09488.1| DNA repair protein RAD54 [Sus scrofa]
          Length = 747

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 575 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 628

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 629 EKIFQRQSHKKALSSCVVD 647


>gi|158258659|dbj|BAF85300.1| unnamed protein product [Homo sapiens]
          Length = 747

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 575 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 628

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 629 EKIFQRQSHKKALSSCVVD 647


>gi|114556131|ref|XP_513146.2| PREDICTED: RAD54-like protein [Pan troglodytes]
          Length = 901

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 669 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 728

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 729 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 782

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 783 EKIFQRQSHKKALSSCVVD 801


>gi|216548186|ref|NP_003570.2| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|216548193|ref|NP_001136020.1| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|51316508|sp|Q92698|RAD54_HUMAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=hHR54; Short=hRAD54
 gi|47777671|gb|AAT38113.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|56204069|emb|CAI22117.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111307699|gb|AAI21061.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111309424|gb|AAI21060.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|119627335|gb|EAX06930.1| RAD54-like (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 747

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 575 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 628

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 629 EKIFQRQSHKKALSSCVVD 647


>gi|1495483|emb|CAA66379.1| RAD54 [Homo sapiens]
          Length = 747

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 575 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 628

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 629 EKIFQRQSHKKALSSCVVD 647


>gi|332019436|gb|EGI59920.1| Lymphoid-specific helicase [Acromyrmex echinatior]
          Length = 690

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K+  L+ ++ K       +++       L  ++                  ++    
Sbjct: 485 SSGKLLVLDAMLAKLKMRGHKVLLFSTMTMILDMIEDYLTLRDYNYVRLDGATKIEARKQ 544

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N    + L      + G GLNL  G + ++ +   W+ +   Q + R       +
Sbjct: 545 NIAAFNNDPDLFLFLISIRAGGVGLNL-MGADTVIIYDSDWNPQVDIQAMARC-----HR 598

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY L  + TIDE +++R   K  ++ ++++
Sbjct: 599 IGQTKPVVVYKLCTKGTIDEAIMKRADAKRILEKIVIS 636


>gi|212532137|ref|XP_002146225.1| SNF2 family helicase/ATPase PasG, putative [Penicillium marneffei
           ATCC 18224]
 gi|210071589|gb|EEA25678.1| SNF2 family helicase/ATPase PasG, putative [Penicillium marneffei
           ATCC 18224]
          Length = 916

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 34/220 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQ--LANGAV------YYDEEKHWKEV---HD 53
            + +R     L  + I    S       +Q  LA  +       + D+     E      
Sbjct: 617 EEIERAKTIKLAKKEI---GSKKLQNPIMQARLACNSPHNFYWPWGDDSSTVDETLITAS 673

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCT 100
            K+  L+ ++         I++   F + L  +Q                G +       
Sbjct: 674 GKMLLLDRLVPCLMKKGHKILIFSQFKTQLDLIQDWATQLRGWNCCRIDGGVSQVDRRAQ 733

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+ +N  K   +      + G G+NL    + ++ F   W+ ++  Q        R  + 
Sbjct: 734 IKAFNSNKNFKIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRI 787

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G  R V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 788 GQTRPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 827


>gi|327286054|ref|XP_003227746.1| PREDICTED: hypothetical protein LOC100558176 [Anolis carolinensis]
          Length = 4477

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L++++ +  A A  +++       L  L++             G T  +    + +
Sbjct: 2877 KLQTLDILLRQLKAGAHRVLIFTQMTRMLDVLEQFLNYHGHIYLRLDGSTRVEQRQALME 2936

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 2937 RFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 2990

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2991 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 3026


>gi|302823829|ref|XP_002993563.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
 gi|300138630|gb|EFJ05392.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
          Length = 852

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 19/159 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCTIQEWNEGK 108
           LE + +K N   ++V  ++   L        ++ +P  R      + K    +Q++N+  
Sbjct: 516 LENLRKKTNDRIVLV-SNYTQTLDLFAQLCRERNYPYVRLDGSTSIGKRQKLVQKFNDPS 574

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                      + G GLNL  GGN LV F   W+    +Q   R+      + G K+ V+
Sbjct: 575 QNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVY 628

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +Y  +A  TI+E V QR  +K  +Q ++    K E   +
Sbjct: 629 IYRFLATGTIEEKVYQRQISKEGLQKVISGDSKAEVRKL 667


>gi|194335233|ref|YP_002017027.1| Non-specific serine/threonine protein kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307710|gb|ACF42410.1| Non-specific serine/threonine protein kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1007

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 35/224 (15%)

Query: 1   MKQYHKFQRE------LYCDLQGENIEAFNSASKTVKCL-------QLANGAVYYDEEKH 47
           MK+Y    +E         D   E IE+     +    L       Q+ N   +   +  
Sbjct: 762 MKEYCSLTKEQASLYKAVVDELQEKIESAEGIDRRGLVLALLVKLKQVCNHPAHLLGDNS 821

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFN-------SDLARLQKA----FPQGRTL 94
                  KIK L  ++   +      ++   F          L  L          G T 
Sbjct: 822 AIAHRSGKIKRLTELLGDIREAGEKTLLFTQFTMMGTMLQHYLQELYGEEVLFLHGGVTK 881

Query: 95  DKDPCTIQEWN--EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    ++ +   EG  P +      + G GLNL    N +V F  WW+     Q  +R 
Sbjct: 882 KRRDEMVESFQKEEGSSPSIFILSLKAGGTGLNLTT-ANHVVHFDRWWNPAVENQATDR- 939

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 + G  + V V+  I   T++E + + +  K+T+   +L
Sbjct: 940 ----AFRIGQHKNVEVHKFITTGTLEERIDEMIEKKTTVAGQVL 979


>gi|62738897|pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           Eukaryotic Rad54
          Length = 644

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 478 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSTGTIE 531

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +LQR   K  +   +++
Sbjct: 532 EKILQRQAHKKALSSCVVD 550


>gi|87123478|ref|ZP_01079329.1| SNF2 related domain:DEAD/DEAH box helicase [Synechococcus sp. RS9917]
 gi|86169198|gb|EAQ70454.1| SNF2 related domain:DEAD/DEAH box helicase [Synechococcus sp. RS9917]
          Length = 1065

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 36/217 (16%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANG---AVYYDEEKHWKEVHDE 54
            Q+ LY     + ++A   A              K  Q+ N    A+  +           
Sbjct: 827  QKALYAKTVEDTLDAIARAPRGQRHGQVLGLLTKLKQICNHPALALKEEAAGDEFLQRSM 886

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCT 100
            K++ LE I+E+        ++   F ++   L + + Q R            +  +    
Sbjct: 887  KLQRLEEILEEVIDAGDRALLFTQF-AEWGHLLQGYLQRRWRSEVPFLNGSTSKSERQAM 945

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + E      L      + G GLNL    + +     WW+     Q  +R       +
Sbjct: 946  VDRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYR 999

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1000 IGQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDII 1036


>gi|300858235|ref|YP_003783218.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685689|gb|ADK28611.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205957|gb|ADL10299.1| ATP dependent helicase [Corynebacterium pseudotuberculosis C231]
 gi|302330510|gb|ADL20704.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276192|gb|ADO26091.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1031

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANG---AVYYDEEKHWKEVH-DEK 55
              Y  +  ++   +      +      +   K  Q+ N     +  D +   K  H   K
Sbjct: 798  ALYRAYVEDIQKQIDQAEGISKRGLVLSALTKIKQICNHPAHFLSDDSDVTVKGKHRSGK 857

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
            ++ L  ++  A  +   +++   + +    L                 G +       ++
Sbjct: 858  VEELMRLVSDAVESEQRLLIFTQYRAFGEILAPYLSDYFGAQIPFLHGGVSKVGRDRMVE 917

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +   +  P +     + G GLNL    +I+V    WW+     Q  +R       + G 
Sbjct: 918  NFQSPQGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQ 971

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++ V VY +I   T++E +   L  K+ +   ++
Sbjct: 972  RKDVTVYKMITAGTLEESIQDILDGKTQLASAVV 1005


>gi|255728815|ref|XP_002549333.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
 gi|240133649|gb|EER33205.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
          Length = 847

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 19/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-- 106
           L  I ++ N   +++  ++   L  ++K                +++K    + ++N   
Sbjct: 613 LHKIKKETNDKIVLI-SNYTQTLDLIEKMCRNKKYGVLRLDGTLSINKRQKLVDKFNNPD 671

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   +      + G G+NL  G N LV     W+    QQ + R+      + G K+  F
Sbjct: 672 GSEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQQALARVW-----RDGQKKDCF 725

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +Y  I+  TI+E + QR   K  +   +++
Sbjct: 726 IYRFISTGTIEEKIFQRQSMKLQLSSCVVD 755


>gi|170043847|ref|XP_001849581.1| domino [Culex quinquefasciatus]
 gi|167867144|gb|EDS30527.1| domino [Culex quinquefasciatus]
          Length = 1027

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
           K++ L+ ++++  +    +++       L  L+              G T  +    + +
Sbjct: 633 KLQTLDRLLKELKSGGHRVLIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQLLME 692

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  K + +      S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 693 RFNGDKRMFVFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 746

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 747 TRDVHIYRLVSEKTIEENILKKANQKRMLGDLAIEG 782


>gi|328699200|ref|XP_001946170.2| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like
           [Acyrthosiphon pisum]
          Length = 1051

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 50/235 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQLAN-------------G 38
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL               G
Sbjct: 390 VKVYVGLSKLQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGVEPG 449

Query: 39  AVYYDEEKHW-----KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----- 88
             Y  +E          V D+ +KAL+        + ++V       +  L+        
Sbjct: 450 PPYTTDEHIVFNCGKMVVFDKLLKALKE-----QDSRVLVFSQMTRMMDILEDYMHWKGY 504

Query: 89  ----PQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G+T  +D    I E+NE   K  +      S G G+NL    ++++ +   W+ 
Sbjct: 505 NYCRLDGQTPHEDRQRQINEYNEPNSKKFVFILSTRSGGLGINL-ATADVVIIYDSDWNP 563

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   Q ++R       + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 564 QMDLQAMDR-----AHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQ 613


>gi|320164602|gb|EFW41501.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 2139

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 32/218 (14%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCL-----------QLAN-GAVYYDEEKHWKEVHDEK 55
            +  +    Q + +   N   +  KC            + A   A   D +         K
Sbjct: 861  KSSMVVQPQQQRVTLMNILMELRKCTNHPYLFPGAEPEFAGDSAEVADMQAQSLVQASGK 920

Query: 56   IKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQE 103
            +  L+ ++   +A    +++       L  L+              G TL+ D    I +
Sbjct: 921  LVLLDKMLPGLRARGHRVLIFSQMTRVLDILEDYLSHLQMPFCRLDGSTLNTDRQHLIDK 980

Query: 104  WNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N    P+        + G G+NL +  + ++ F   ++     Q + R       + G 
Sbjct: 981  FNAPNSPIFCFLLSTRAGGLGINL-HTADTIIMFDSDFNPHSDMQALSR-----AHRIGQ 1034

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K+ V VY L+  +TI+E +LQR R K  +  +++  L+
Sbjct: 1035 KKPVTVYRLVTSDTIEEGILQRARKKLLLGHVVVEKLE 1072


>gi|312197752|ref|YP_004017813.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311229088|gb|ADP81943.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 1045

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 23/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
              Y     ++   L+  +          +   +  Q+ N   +   +         K+  
Sbjct: 813  ALYRAVVDDMMERLRDASSPVRRNGVVLAAMTRLKQVCNHPAHLLGDGSALAGRSGKLAR 872

Query: 59   LEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT-IQEWN 105
            LE ++ +  A     +    F           S    ++ +F  G     +    I+ + 
Sbjct: 873  LEELLTQVVAGGERALCFTQFARFGAMLAPYLSTRLGVEVSFLHGGLRAAERDALIERFQ 932

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G  P +      + G G+NL    N +V    WW+     Q  +R       + G +R 
Sbjct: 933  TGTGPGVFLLSLKAGGTGVNLT-AANHVVHVDRWWNPAVEAQATDR-----AHRIGQRRD 986

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+V  L+   T++E + + L  K+ +   ++  
Sbjct: 987  VWVRTLLCMGTLEERIDRILVDKAALARTVVGG 1019


>gi|213964455|ref|ZP_03392655.1| SNF2/RAD54 family protein [Corynebacterium amycolatum SK46]
 gi|213952648|gb|EEB64030.1| SNF2/RAD54 family protein [Corynebacterium amycolatum SK46]
          Length = 1079

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEK--ANAAPIIVAYHFN---- 78
             +K  Q+ N   +Y  +      H      K+  LE ++++   N    +V   F     
Sbjct: 822  IMKLKQICNHPAHYQHDGSGLLNHGQHRSGKVARLEELVDEIVQNGERALVFTQFVEFGK 881

Query: 79   ----SDLARLQKAFP---QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
                    RL    P      T  +    + E+N     P++     + G G+NL    N
Sbjct: 882  MLAPHFSKRLGVDIPFIQGAMTPAQREKVVAEFNAPDGPPIILLSTLAAGVGINL-VAAN 940

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++    WW+     Q  +R       + G ++ V V+ L++  T++E + + +  K+ +
Sbjct: 941  HVIHIDRWWNPAVENQATDR-----SYRIGQRKDVHVHKLVSVGTLEERIDELIFEKAEL 995

Query: 191  QDLLLNA 197
             D ++ A
Sbjct: 996  ADAVVRA 1002


>gi|159154987|gb|AAI54480.1| Hells protein [Danio rerio]
          Length = 290

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 68  GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 127

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY LI  NTI
Sbjct: 128 RAGGLGINLT-SADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLITANTI 181

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 182 DEKILERASAKRKLEKMVI 200


>gi|242023203|ref|XP_002432025.1| DNA repair and recombination protein RAD54B, putative [Pediculus
           humanus corporis]
 gi|212517383|gb|EEB19287.1| DNA repair and recombination protein RAD54B, putative [Pediculus
           humanus corporis]
          Length = 840

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKE----VHDEKIK 57
            Y+          + E  IE  +         ++ N     +++ ++ E        K+K
Sbjct: 511 MYNSLVNSFLNAKESEEFIEGSSHLELITSLKKICNYPSLLNKDDNYLEKIDIDTSGKLK 570

Query: 58  A----LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLD-KDPCTIQE 103
                L+ +   +    +++  +    L  L+K F           G T   +    +++
Sbjct: 571 VTVNFLKELQMTSVKEKVLIVSNATQTLNLLEKVFHVLNYSTCRLDGNTPSAQRNKIVED 630

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N    + +      + G GLN+  G + L+ F   W+     Q I RI      + G K
Sbjct: 631 FNTSRDLFIFLLSSKAGGVGLNVT-GASRLILFDSDWNPATDLQAISRIW-----RDGQK 684

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VF+Y L+   TI+E + QR  +K  + +  ++
Sbjct: 685 FPVFIYRLLTTGTIEEKIYQRQISKQGLCEGTVD 718


>gi|115910490|ref|XP_783941.2| PREDICTED: similar to PASG [Strongylocentrotus purpuratus]
 gi|115960855|ref|XP_001194026.1| PREDICTED: similar to PASG [Strongylocentrotus purpuratus]
          Length = 734

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 22/160 (13%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
           V D+ + AL+          +++   F + L  L+                 +L+     
Sbjct: 495 VVDKLLPALKE-----RGHKVLIFSQFTTMLDILEDFCHMRSHQYCRLDGTTSLEDRQER 549

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + L      + G G+NL    + ++ +   W+ +   Q  +R       + 
Sbjct: 550 MKEFNSNPDVFLFLLSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRI 603

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G  + V +Y L+  NTID+ +++R   K  ++ ++++  K
Sbjct: 604 GQTKPVIIYRLVTANTIDQRIVERAAAKRKLEKMVIHQGK 643


>gi|146088639|ref|XP_001466107.1| DNA repair protein [Leishmania infantum JPCM5]
 gi|134070209|emb|CAM68545.1| putative DNA repair protein [Leishmania infantum JPCM5]
          Length = 1092

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 20/162 (12%)

Query: 49   KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDK 96
            K +H  K+ A+   IEK      ++V   F S L  L + + Q R           TL +
Sbjct: 919  KPLHGTKLDAIANYIEKVPKDEKVVVFSQFGSMLD-LTQYWLQRRSIRAVKLCGSLTLTQ 977

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +Q + ++  + ++     + G GLNLQ   N +V    WW+     Q ++R     
Sbjct: 978  RQSVLQAFLHDQNVRVILISLKAGGEGLNLQV-ANHVVLTDPWWNPAVEMQAVQR----- 1031

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1032 AHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|297848774|ref|XP_002892268.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338110|gb|EFH68527.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 843

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI+AL      ++E+  +A  IV   F S L  +     +            T+   
Sbjct: 670 TSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDIINYTLGKCGVSCVQLVGSMTMAAR 729

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I ++  +    +      + G  LNL    ++ +    WW+       +ER    R 
Sbjct: 730 DTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMM-DPWWN-----PAVERQAQDRI 783

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + + V   I +NT++E +L+  + K  + +
Sbjct: 784 HRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFE 819


>gi|133778670|gb|AAI33862.1| Hells protein [Danio rerio]
          Length = 270

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 48  GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 107

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY LI  NTI
Sbjct: 108 RAGGLGINLT-SADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLITANTI 161

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 162 DEKILERASAKRKLEKMVI 180


>gi|71681342|gb|AAI00395.1| Helicase, lymphoid specific [Mus musculus]
          Length = 821

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       ++V     S L  L                  +  + 
Sbjct: 578 VTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHPRNFIFSRLDGSMSYSER 637

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N +  + L      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 638 EKNIYSFNTDPDVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 691

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 692 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 730


>gi|291398984|ref|XP_002715711.1| PREDICTED: RAD54-like protein [Oryctolagus cuniculus]
          Length = 755

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 523 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPTSPDFVFMLSSK 582

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 583 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 636

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 637 EKIFQRQSHKKALSSCVVD 655


>gi|221508291|gb|EEE33878.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 998

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 52  HDEKIKAL-EVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDK 96
              KI+AL + ++E   +      +V   F S L  ++    +G             + +
Sbjct: 824 SSTKIEALYQELLEIEREDTTVKSLVFSQFCSMLDLIEWRLKKGGIHCAKMVGSMSIVSR 883

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                   N+  + +L     + G GLNLQ   + +     WW+     Q I+R      
Sbjct: 884 SNVLYAFNNDPSLKVLLISLKAGGEGLNLQI-ASRIFLMDPWWNPAAEMQAIQR-----A 937

Query: 157 RQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G + + V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 938 HRIGQRHKEVIAIRFIAEKTIEERILQLQEKKQLVFDGTVGA 979


>gi|73998082|ref|XP_859465.1| PREDICTED: similar to helicase, lymphoid-specific isoform 9 [Canis
           familiaris]
          Length = 692

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 548 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 605

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 606 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 659

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY L+  NTID+ +++R   K  ++ L+++  K
Sbjct: 660 VYRLVTANTIDQKIVERAAAKRKLEKLIIHKSK 692


>gi|291398172|ref|XP_002715776.1| PREDICTED: transcription termination factor, RNA polymerase II
            [Oryctolagus cuniculus]
          Length = 1163

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQEWNEGK 108
            LE I   + +   ++   + S L      L++      T+D           ++ +N   
Sbjct: 1001 LEAIRSNSKSQKSVIVSQWTSMLKVVALHLKRHGLTYATIDGSVNPKQRMDLVEAFNRSS 1060

Query: 109  IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P ++     + G GLNL  GGN L    + W+     Q  +RI      + G ++ V +
Sbjct: 1061 GPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQQKDVVI 1114

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  + + T++E +LQ    K  +   +L+ 
Sbjct: 1115 HRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1144


>gi|22326612|ref|NP_196132.2| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|20260624|gb|AAM13210.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
 gi|31711770|gb|AAP68241.1| At5g05130 [Arabidopsis thaliana]
 gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis thaliana]
          Length = 862

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L    ++      +V   F   L  L+                 T+ K    I E
Sbjct: 692 ALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGE 751

Query: 104 WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +   ++    +L A   + G G+NL    + +  F  WW+    +Q ++RI      + G
Sbjct: 752 FGNPELTGPVVLLASLKASGTGINLT-AASRVYLFDPWWNPAVEEQAMDRI-----HRIG 805

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            K+ V +  +IA+N+I+E VL+  + K  + +    A K+ 
Sbjct: 806 QKQEVKMIRMIARNSIEERVLELQQKKKNLAN---EAFKRR 843


>gi|60390959|sp|Q9FF61|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1; Short=SMARCA3-like protein 1
 gi|10178052|dbj|BAB11535.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
          Length = 881

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L    ++      +V   F   L  L+                 T+ K    I E
Sbjct: 711 ALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGE 770

Query: 104 WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +   ++    +L A   + G G+NL    + +  F  WW+    +Q ++RI      + G
Sbjct: 771 FGNPELTGPVVLLASLKASGTGINLT-AASRVYLFDPWWNPAVEEQAMDRI-----HRIG 824

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            K+ V +  +IA+N+I+E VL+  + K  + +    A K+ 
Sbjct: 825 QKQEVKMIRMIARNSIEERVLELQQKKKNLAN---EAFKRR 862


>gi|156089179|ref|XP_001611996.1| DNA repair protein rhp16 [Babesia bovis T2Bo]
 gi|154799250|gb|EDO08428.1| DNA repair protein rhp16, putative [Babesia bovis]
          Length = 1289

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 26/170 (15%)

Query: 52   HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDK 96
               KI+AL      ++   +   I V   + S L  +                  +   +
Sbjct: 1117 SSTKIEALFQELTTVLTTTSDKSI-VFSQYCSMLDLIAYRLKTANIECAVLVGNTKIESR 1175

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++      + ++     + G GLNLQ   N +     WW+     Q I+R      
Sbjct: 1176 RNILLEFNKNPSLRVMLISLNAGGEGLNLQI-ANRIFLMDPWWNPAAELQAIQR-----A 1229

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
             + G  + V+    I ++TI+E ++     K  + D  +     ++KK T
Sbjct: 1230 HRIGQTKPVYAIRFICKDTIEERIIALQEKKMILFDATICSSGESMKKLT 1279


>gi|268534396|ref|XP_002632329.1| Hypothetical protein CBG00336 [Caenorhabditis briggsae]
          Length = 753

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPC-T 100
             K+ AL  +++  +      +V  ++   L  +++             G+T  +D    
Sbjct: 434 SGKLYALADMLKCFRMLQECTVVVSNYIETLDMIEQLCAYLEFRVFRLDGKTQVQDRQKL 493

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N+ + P  +      + G GLNL  G + LV F   W+    QQ + RI      +
Sbjct: 494 VRNFNDQRDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----R 547

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 548 DGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 587


>gi|73998072|ref|XP_859283.1| PREDICTED: similar to helicase, lymphoid-specific isoform 4 [Canis
           familiaris]
          Length = 707

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 476 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 533

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 534 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 587

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 588 VYRLVTANTIDQKIVERAAAKRKLEKLII 616


>gi|224108163|ref|XP_002314744.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222863784|gb|EEF00915.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 752

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI 101
             K +AL  ++         +++   + S L  L+              G T   +   I
Sbjct: 578 SAKCRALAELLPDLKKCGHRVLIFSQWTSMLDILEWTLDVLGVTYRRLDGSTQVTERQAI 637

Query: 102 QE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +   N+  I        + G GLNL  G + ++   L ++ +  +Q  +R       + 
Sbjct: 638 VDAFNNDTSISACLLSTRAGGQGLNLT-GADTVIIHDLDFNPQIDRQAEDRC-----HRI 691

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +Y L+ + T+DE V +  + K  +   +L +
Sbjct: 692 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLES 729


>gi|164659754|ref|XP_001731001.1| hypothetical protein MGL_2000 [Malassezia globosa CBS 7966]
 gi|159104899|gb|EDP43787.1| hypothetical protein MGL_2000 [Malassezia globosa CBS 7966]
          Length = 1627

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L+ ++ +   +   +++       L  L+K F           G T  +    + +
Sbjct: 1300 KLQQLDTLMRRLVTDGHRVLIFTQMTKVLDILEKFFNYHGYRYLRLDGATKVEQRQALTE 1359

Query: 103  EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N   +I        S G G+NL  G + ++F+ L W+     Q ++R       + G 
Sbjct: 1360 RFNRDSRISAFILSTRSGGLGINL-VGADTVIFYDLDWNAAIESQCMDR-----AHRIGQ 1413

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  ++++TI+E +L++   K  +  L++ 
Sbjct: 1414 TRDVHIYRFVSEHTIEENMLRKANQKRRLDQLVIQ 1448


>gi|12232371|ref|NP_032260.2| lymphocyte-specific helicase [Mus musculus]
 gi|81910423|sp|Q60848|HELLS_MOUSE RecName: Full=Lymphocyte-specific helicase; AltName:
           Full=Proliferation-associated SNF2-like protein
 gi|12002696|gb|AAG43373.1|AF155210_1 proliferation associated SNF2-like protein [Mus musculus]
 gi|12061562|gb|AAB08015.2| lymphocyte specific helicase [Mus musculus]
 gi|74151148|dbj|BAE27697.1| unnamed protein product [Mus musculus]
 gi|148709866|gb|EDL41812.1| helicase, lymphoid specific [Mus musculus]
          Length = 821

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       ++V     S L  L                  +  + 
Sbjct: 578 VTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSER 637

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N +  + L      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 638 EKNIYSFNTDPDVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 691

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 692 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 730


>gi|309366189|emb|CAP21805.2| hypothetical protein CBG_00336 [Caenorhabditis briggsae AF16]
          Length = 1062

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPC-T 100
             K+ AL  +++  +      +V  ++   L  +++             G+T  +D    
Sbjct: 650 SGKLYALADMLKCFRMLQECTVVVSNYIETLDMIEQLCAYLEFRVFRLDGKTQVQDRQKL 709

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N+ + P  +      + G GLNL  G + LV F   W+    QQ + RI      +
Sbjct: 710 VRNFNDQRDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----R 763

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 764 DGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 803


>gi|119627334|gb|EAX06929.1| RAD54-like (S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 567

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 335 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 394

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 395 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 448

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 449 EKIFQRQSHKKALSSCVVD 467


>gi|126344594|ref|XP_001379453.1| PREDICTED: similar to Snf2-related CBP activator protein,, partial
            [Monodelphis domestica]
          Length = 3130

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K++ L V++ +  A A  +++       L  L++             G T  +    + +
Sbjct: 2064 KLQTLAVLLRRLKAGAHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2123

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 2124 RFNADKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 2177

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2178 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2213


>gi|292630891|sp|B5VE38|RDH54_YEAS6 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|207347718|gb|EDZ73802.1| YBR073Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 924

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K++ L  ++E   K     ++V  ++   L  ++                   
Sbjct: 624 SRSLNSGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 683

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 684 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 740

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 741 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 779


>gi|292630869|sp|B3LN76|RDH54_YEAS1 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|190408764|gb|EDV12029.1| helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 924

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K++ L  ++E   K     ++V  ++   L  ++                   
Sbjct: 624 SRSLNSGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 683

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 684 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 740

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 741 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 779


>gi|292630870|sp|A6ZL17|RDH54_YEAS7 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|151946464|gb|EDN64686.1| rad54-like protein [Saccharomyces cerevisiae YJM789]
          Length = 924

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K++ L  ++E   K     ++V  ++   L  ++                   
Sbjct: 624 SRSLNSGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 683

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 684 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPSVDLQAMSRI-- 740

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 741 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 779


>gi|26378644|dbj|BAB28757.2| unnamed protein product [Mus musculus]
          Length = 808

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       ++V     S L  L                  +  + 
Sbjct: 565 VTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSER 624

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N +  + L      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 625 EKNIYSFNTDPDVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 678

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 679 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 717


>gi|123123061|emb|CAM19309.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 768

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 472 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 531

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I  +N       +      + G G+NL    ++++ 
Sbjct: 532 DGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 590

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 591 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 645

Query: 195 LN 196
           + 
Sbjct: 646 IQ 647


>gi|302791647|ref|XP_002977590.1| hypothetical protein SELMODRAFT_450749 [Selaginella moellendorffii]
 gi|300154960|gb|EFJ21594.1| hypothetical protein SELMODRAFT_450749 [Selaginella moellendorffii]
          Length = 2094

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ +  +     ++       L  L+              G 
Sbjct: 1103 PDRRLLQFDCGKLQQLSVLLRRLKSEGHRALIFTQMTKMLDILESFINLYGYNYMRLDGS 1162

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + Q +N   KI L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1163 TKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1221

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y L++++TI+E +L++   K  + +L++ +
Sbjct: 1222 C-----HRIGQTREVHIYRLVSESTIEENILKKANQKRFLDNLVIQS 1263


>gi|7022306|dbj|BAA91550.1| unnamed protein product [Homo sapiens]
 gi|55662168|emb|CAH70224.1| helicase, lymphoid-specific [Homo sapiens]
          Length = 310

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 32  VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 91

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 92  EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 145

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 146 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 184


>gi|67538626|ref|XP_663087.1| hypothetical protein AN5483.2 [Aspergillus nidulans FGSC A4]
 gi|40743453|gb|EAA62643.1| hypothetical protein AN5483.2 [Aspergillus nidulans FGSC A4]
 gi|259485068|tpe|CBF81824.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1184

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 38/212 (17%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            R+   +L+ E   + N  SK     +L         EK W  +   KI+    II     
Sbjct: 970  RKTLAELKKEA--SKNQESKRKYLRRL---------EKTW--ITSAKIEKTMEIIRDIER 1016

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWNEGKIPL 111
            + N   II+   F S L  L+   P  R               D++   +   ++    +
Sbjct: 1017 RDNNEKIIIFSQFTSLLDLLE--IPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKV 1074

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     +   GLNL    N ++ F  +W+    +Q ++R       + G  R V V+ ++
Sbjct: 1075 MLVSLKAGNSGLNL-VAANHVIIFDPFWNPYVEEQAVDR-----AHRIGQLREVHVHRIL 1128

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               T+++ +++    K  I D  L+  + + I
Sbjct: 1129 VPETVEDRIIELQDKKRAIIDGALDEKESKNI 1160


>gi|157103787|ref|XP_001648130.1| helicase [Aedes aegypti]
 gi|108880485|gb|EAT44710.1| helicase [Aedes aegypti]
          Length = 1027

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKHWKEV--- 51
           K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E          
Sbjct: 379 KMQREWYTKILMKDIDIVNGAGKMEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 438

Query: 52  ---HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKD 97
              +  K+  L+ ++ K     + ++V       L  L         Q     G+T  +D
Sbjct: 439 LLENSGKMVVLDKLLTKLQEQGSRVLVFSQMTRMLDILEDYCYWRGYQYCRLDGQTPHED 498

Query: 98  P-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 499 RTKMIDEYNAENSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 553

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 554 -AHRIGQKKQVRVFRLITENTVEEKIVERAEIKLKLDKLVIQ 594


>gi|254585925|ref|XP_002498530.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
 gi|238941424|emb|CAR29597.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
          Length = 901

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 21/166 (12%)

Query: 50  EVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
           E +  K++ L  ++     +  +  ++V  ++   L  ++                    
Sbjct: 597 EYNSGKLRVLMKLLNQIKIETTSDKVVVISNYTQTLDIIENLMASAGMSSCRLDGSTPAK 656

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    +  +N    I        S G GLNL  G   L+ F   W+     Q + RI   
Sbjct: 657 QRDAIVNNFNHNPSIFAFLLSAKSGGVGLNL-IGACRLILFDNDWNPSVDLQAMSRI--- 712

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G K+  ++Y L+    IDE +LQR   K+ +    L+  K 
Sbjct: 713 --HRDGQKKPCYIYRLVTTGCIDEKILQRQLMKNCLSQKFLSDTKS 756


>gi|47219154|emb|CAG01817.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1805

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 41/182 (22%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------- 93
            +K    +   K+  L+V++ +  +    +++       +  L++     +          
Sbjct: 1269 DKESLIMESGKLHTLDVLLSRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSS 1328

Query: 94   -LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNI-------------------- 131
             + +    + ++     I +      + G G+NL     +                    
Sbjct: 1329 KISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVSGGRSSSGSARTGHVGDVVL 1388

Query: 132  ---LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               ++F+   W+    QQ ++R       + G  + V VY LI Q TI+E +LQR + KS
Sbjct: 1389 LFQVIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICQGTIEERILQRAKEKS 1443

Query: 189  TI 190
             +
Sbjct: 1444 EV 1445


>gi|237833999|ref|XP_002366297.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
 gi|211963961|gb|EEA99156.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
          Length = 1667

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 52   HDEKIKAL-EVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDK 96
               KI+AL + ++E   +      +V   F S L  ++    +G             + +
Sbjct: 1493 SSTKIEALYQELLEIEREDTTVKSLVFSQFCSMLDLIEWRLKKGGIHCAKMVGSMSIVSR 1552

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    N+  + +L     + G GLNLQ   + +     WW+     Q I+R      
Sbjct: 1553 SNVLYAFNNDPSLKVLLISLKAGGEGLNLQI-ASRIFLMDPWWNPAAEMQAIQR-----A 1606

Query: 157  RQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G + + V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 1607 HRIGQRHKEVIAIRFIAEKTIEERILQLQEKKQLVFDGTVGA 1648


>gi|326923617|ref|XP_003208031.1| PREDICTED: lymphoid-specific helicase-like [Meleagris gallopavo]
          Length = 871

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDP 98
           +  K   L+ ++ +       +++       L  L      ++F   R        D++ 
Sbjct: 629 NSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRSFKFSRLDGSMSYSDREE 688

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              Q  N+ ++ L      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 689 NMHQFNNDPEVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HR 742

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 743 IGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 779


>gi|145295306|ref|YP_001138127.1| hypothetical protein cgR_1246 [Corynebacterium glutamicum R]
 gi|140845226|dbj|BAF54225.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1034

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 26/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVEDVQKQLDERQGMSRKGLVLATITRIKQICNHPAHFLGDGSEVTLKGKHRSGKV 858

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSD--------LARLQKAFP---QGRTLDKDPCTIQE 103
            +AL  +I+ A      +++   + +           RL    P    G T       + E
Sbjct: 859  EALMELIDTAVKEERRMLIFTQYAAFGRILAPYLSDRLGTNIPFLHGGVTKPGRDRMVAE 918

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +      P +     + G GLNL    +I+V    WW+     Q  +R       + G +
Sbjct: 919  FQSEDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQR 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY +I   T++E +   L  K+ +   ++
Sbjct: 973  KNVDVYKMITVGTMEESIQDILDGKTHLASAIV 1005


>gi|19552388|ref|NP_600390.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390052|ref|YP_225454.1| SNF2 family DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323931|dbj|BAB98557.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
            glutamicum ATCC 13032]
 gi|41325388|emb|CAF19868.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
            glutamicum ATCC 13032]
          Length = 1034

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 26/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVEDVQKQLDERQGMSRKGLVLATITRIKQICNHPAHFLGDGSEVTLKGKHRSGKV 858

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSD--------LARLQKAFP---QGRTLDKDPCTIQE 103
            +AL  +I+ A      +++   + +           RL    P    G T       + E
Sbjct: 859  EALMELIDTAVKEERRMLIFTQYAAFGRILAPYLSDRLGTNIPFLHGGVTKPGRDRMVAE 918

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +      P +     + G GLNL    +I+V    WW+     Q  +R       + G +
Sbjct: 919  FQSEDGPPAMILSLKAGGTGLNLT-AASIVVHMDRWWNPAVENQATDR-----AFRIGQR 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY +I   T++E +   L  K+ +   ++
Sbjct: 973  KNVDVYKMITVGTMEESIQDILDGKTHLASAIV 1005


>gi|123123062|emb|CAM19310.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1033

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 392 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ +     + +++       L  L+          +  
Sbjct: 452 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 511

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I  +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LN 196
           + 
Sbjct: 626 IQ 627


>gi|320580035|gb|EFW94258.1| DNA helicase [Pichia angusta DL-1]
          Length = 395

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 22/158 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRT-LDKDPCT 100
           +  +  L+ I E+     +IV   F S L  ++K               GR  +D+    
Sbjct: 223 NALLSHLQQIYEENPGDHVIVFSQFTSFLDLVEKELKSYTCNFRILKFDGRLNVDQRQRA 282

Query: 101 IQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + E+N    +G+I +L     + G GLNL    +        W+     Q I+RI     
Sbjct: 283 LNEFNTKTTDGRITILLISLKAGGVGLNLTI-ASKAFLLDPHWNNATEFQAIDRI----- 336

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  ++V V   I + +I+E +L+    K+ + + L
Sbjct: 337 HRVGQSKSVKVVRFIMEGSIEERMLKIQERKNQLGEAL 374


>gi|331238525|ref|XP_003331917.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310907|gb|EFP87498.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1036

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKA 66
            +  DL  + +E  N  SK     Q   G +   +   W+     KI+AL      + +  
Sbjct: 830  ITIDLSQDALEDENMGSKA---RQ---GVLDRLDPGKWR--TSTKIEALVEELSKLNQSD 881

Query: 67   NAAPIIVAYHFNSDLARLQKA-----FPQGR-----TLDKDPCTIQEW-NEGKIPLLFAH 115
            +    IV   F   L  +++      F   R     T +    TIQ + N   + +    
Sbjct: 882  HTIKSIVFSQFTVFLDLIERRLQLAGFKLARLQGNMTPEARNRTIQYFMNNNDVQVFLVS 941

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G  LNL     + +    WW+     Q ++RI      + G  R V V  LI +N+
Sbjct: 942  LKAGGVALNLTEASRVFIM-DPWWNPAVELQAMDRI-----HRLGQHRPVVVTRLIIENS 995

Query: 176  IDELVLQRLRTKSTI 190
            I+  +++  + K  +
Sbjct: 996  IESRIVELQKKKEAM 1010


>gi|307199888|gb|EFN80285.1| DNA repair and recombination protein RAD54B [Harpegnathos saltator]
          Length = 509

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 63  IEKANAAPIIVAYHF-NSDL-------ARLQKAFPQGRT-LDKDPCTIQEWNE--GKIPL 111
           ++  N   ++V+Y+    DL        RL+     G T        I+++N    +  +
Sbjct: 256 LKNTNEKLVLVSYYTQTLDLLQTVCSVERLKYLRLDGATSTTTRSKVIEQFNTKTDESKI 315

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL  G + LV F   W+     Q + RI      + G K+ V++Y L+
Sbjct: 316 LLLSAKAGGVGLNL-PGASRLVLFDSDWNPASDMQAMARIW-----RDGQKKDVYIYRLL 369

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              TI+E + QR  +K+ + + +++
Sbjct: 370 TTGTIEEKIYQRQISKAGLSEFVVD 394


>gi|323451886|gb|EGB07762.1| hypothetical protein AURANDRAFT_37691 [Aureococcus anophagefferens]
          Length = 615

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 27/189 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE-------KIKALEVIIEK--ANAAPIIVAYHF 77
           S  ++  +  N    ++       V D+       K+  L+ ++ K  A     ++   F
Sbjct: 285 SLLMQLRKCCNHPYLFEGADPDPGVTDDALVEASGKLHVLDRLLTKLKAKGHRCVLFSQF 344

Query: 78  NSDLARL----QKAFPQGRTLDKDPC------TIQEWNEGK--IPLLFAHPASCGHGLNL 125
            S L  L    +    +   LD           IQ +N     + L      + G G+NL
Sbjct: 345 TSTLDLLDDVLRYRGYEFSRLDGSTNRVQRTVDIQAFNAPGSGVFLFLMSTRAGGLGVNL 404

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           Q   +  + F   W+ +   Q + R+      + G  + V VY L+ + T++E ++QR  
Sbjct: 405 QT-ADTCILFDSDWNPQADAQAMARV-----HRIGQTKPVHVYRLVTKGTVEERIVQRAE 458

Query: 186 TKSTIQDLL 194
            K  +  ++
Sbjct: 459 KKLYLDSMV 467


>gi|224092566|ref|XP_002309665.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222855641|gb|EEE93188.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1340

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
              K++ L+ ++ +       +++   F   L  L+              G+    +   
Sbjct: 611 TSGKLQLLDKLMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWMYERIDGKVGGAERQV 670

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 671 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 724

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I
Sbjct: 725 RLGQTNKVLIYRLITRGTIEERMMQLTKKKMVLEHLVVGRLKAQNI 770


>gi|302786826|ref|XP_002975184.1| hypothetical protein SELMODRAFT_450747 [Selaginella moellendorffii]
 gi|300157343|gb|EFJ23969.1| hypothetical protein SELMODRAFT_450747 [Selaginella moellendorffii]
          Length = 2063

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ +  +     ++       L  L+              G 
Sbjct: 1076 PDRRLLQFDCGKLQQLSVLLRRLKSEGHRALIFTQMTKMLDILESFINLYGYNYMRLDGS 1135

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + Q +N   KI L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1136 TKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1194

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y L++++TI+E +L++   K  + +L++ +
Sbjct: 1195 C-----HRIGQTREVHIYRLVSESTIEENILKKANQKRFLDNLVIQS 1236


>gi|260949593|ref|XP_002619093.1| hypothetical protein CLUG_00252 [Clavispora lusitaniae ATCC 42720]
 gi|238846665|gb|EEQ36129.1| hypothetical protein CLUG_00252 [Clavispora lusitaniae ATCC 42720]
          Length = 351

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
           ++ +  ++ I        IIV  HF +    +  A  Q             +D    TI+
Sbjct: 176 NKTLDLIKDITTSNLDEKIIVFSHFTTTFDLMGYALKQENIKYLRYDGSMNIDSKNATIK 235

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ EG   +L     +   GL L    ++++    +W+     Q ++R       + G  
Sbjct: 236 DFYEGNTRVLLLSLKAGNVGLTLTCASHVIIM-DPFWNPFVEDQAMDR-----AHRFGQM 289

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + V VY ++ ++++++ ++     K  + +  L+
Sbjct: 290 KPVHVYKILIRDSVEDRIMDLQERKKELINAALD 323


>gi|73998074|ref|XP_859321.1| PREDICTED: similar to helicase, lymphoid-specific isoform 5 [Canis
           familiaris]
          Length = 739

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 508 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 565

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 566 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 619

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 620 VYRLVTANTIDQKIVERAAAKRKLEKLII 648


>gi|327300239|ref|XP_003234812.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
 gi|326462164|gb|EGD87617.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
          Length = 777

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    +++   F   L  L+    Q R              D+        N+    +  
Sbjct: 547 SKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNNDPDYRIFL 606

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 607 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 660

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            TI++ +L+R  +K  ++ L++   K
Sbjct: 661 GTIEQTLLERAGSKRRLEKLVIQKGK 686


>gi|47459148|ref|YP_016010.1| SWF/SNF family helicase [Mycoplasma mobile 163K]
 gi|47458477|gb|AAT27799.1| swf/snf family helicase-like protein [Mycoplasma mobile 163K]
          Length = 958

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 19/164 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
           K  K    EK+     +I+        +++   F  ++   +K F +         G+T 
Sbjct: 783 KSDKFDTSEKLNYCINLIKSIKLLKQKVLIFTQFTKNIPFFEKNFIKSNIKYDIISGKTN 842

Query: 95  DKDPCTIQE-WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K+   I E +NE   I +L     +   GLNL    N ++ + +WW+     Q I+R+ 
Sbjct: 843 KKERFKITEYFNESSDIDVLIISLRAGSLGLNLTSANN-VILYDIWWNQSVESQAIDRV- 900

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR V V+ LI ++TI+E V +    K  I D++L 
Sbjct: 901 ----HRIGQKRGVNVFKLIMKDTIEEKVFELQSQKQKIIDIVLE 940


>gi|118083556|ref|XP_416595.2| PREDICTED: similar to MGC81081 protein [Gallus gallus]
          Length = 1178

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-- 101
               +  L+ I   +     +V   + S L           L+ +   G    K    +  
Sbjct: 1010 SHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVE 1069

Query: 102  QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N  K P ++     + G GLNL  GGN L    + W+     Q  +RI      + G
Sbjct: 1070 EFNNNPKGPQVMLVSLLAGGVGLNLT-GGNHLFLLDMHWNPALEDQACDRI-----YRVG 1123

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             K+ V ++  + + T++E +LQ    K  +   +L A K ET
Sbjct: 1124 QKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVL-AGKGET 1164


>gi|115727572|ref|XP_788696.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 2
           [Strongylocentrotus purpuratus]
 gi|115939380|ref|XP_001176134.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 1019

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 42/230 (18%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD------ 43
           K Y      QRE Y  +  ++I+  N A K+ K           +  N    +D      
Sbjct: 368 KMYVGMSIMQREWYTKILMKDIDVVNGAGKSDKMRLMNILMHLRKCGNHPYLFDGAEPGP 427

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
               +KH  E +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 428 PYTTDKHLVE-NSGKMSVLDKLLPKLKEQGSRVLIFSQMTRLLDILEDYCVWRGHNYCRL 486

Query: 90  QGRTLDKDPC-TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +   +I  +N  + +  +      + G G+NL    +I+V +   W+ +   Q
Sbjct: 487 DGQTPHAERQESINNFNMPDSEKFVFLLSTRAGGLGINL-ATADIVVLYDSDWNPQVDLQ 545

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I++NT++E +++R   K  + ++++ 
Sbjct: 546 AMDR-----AHRIGQKKQVHVFRFISENTVEERIVERAEMKLRLDNIVIQ 590


>gi|257067534|ref|YP_003153789.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
 gi|256558352|gb|ACU84199.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
          Length = 1026

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 30/217 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKT--VKCLQLANG-AVYYDEEKHWK---EVHDEKI 56
            Y     EL   + G + +   +   +   +  Q+ N  A Y  +        E    K+
Sbjct: 789 LYEAIVEELMTQIDGADEKNRRTLVVSAITRLKQVCNHPAHYLGDGSALVREGEHRSGKL 848

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARL----QKAFPQ-----------GRTLDKDPC 99
           + ++ +++ A       ++   F +    L    ++ F +               D+D  
Sbjct: 849 ELVDDLLQTAFEKGHKALLFTQFTTFGHLLVPYWRERFAEFGIDVPFLHGGVSKRDRDQM 908

Query: 100 TIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +       P L+     + G GL L    N +V    WW+     Q  +R       +
Sbjct: 909 VAEFQQHRDRPGLMLLSLRAGGTGLTLT-AANHVVHLDRWWNPAVENQATDR-----AFR 962

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G +R V V  L++  T++E +   L+ K  + +L +
Sbjct: 963 IGQRRDVTVNTLVSAGTVEEKIDTVLQDKQALAELTV 999


>gi|224049311|ref|XP_002191591.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5
           [Taeniopygia guttata]
          Length = 1093

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 450 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 509

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 510 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 569

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +N+      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 570 DGQTPHNERQASINAFNDPDSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 628

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++   K
Sbjct: 629 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGK 676


>gi|114631887|ref|XP_001151463.1| PREDICTED: helicase, lymphoid-specific isoform 13 [Pan troglodytes]
          Length = 779

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 497 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 556

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 557 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 610

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 611 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 649


>gi|308809077|ref|XP_003081848.1| putative SNF2 domain-containing protein (ISS) [Ostreococcus tauri]
 gi|116060315|emb|CAL55651.1| putative SNF2 domain-containing protein (ISS) [Ostreococcus tauri]
          Length = 1782

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 40/227 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK-----------TVKCLQLANGAVYYDEEKHWKE 50
            K Y  F+     D +   + A                      +L +      +    K 
Sbjct: 1485 KMYDSFESS---DAKSAAVSAVEGGGNAEGAAAHVFQTLQYLRKLCSHPKLVSDTTSKKF 1541

Query: 51   VHDE---KIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
              D    K  A E             ++V     S L  ++      +  D         
Sbjct: 1542 DPDMRSPKFDAGEDAKPNPAAGAGHRVLVFSQLKSLLDLVETELFTTQMRDVSWLRLDGS 1601

Query: 96   ----KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +    ++++N +  I +L       G GLNL    + +VF    W+ ++  Q ++R
Sbjct: 1602 VAPSQRFDVVRKFNADPSIDVLLLTTHVGGLGLNLT-SADTVVFLEHDWNPQKDLQAMDR 1660

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G ++ V VY ++ + T++E ++   R K  + + ++NA
Sbjct: 1661 -----AHRLGQRKTVNVYRILTRGTLEEKIMSLQRFKLDVANAVVNA 1702


>gi|302809340|ref|XP_002986363.1| hypothetical protein SELMODRAFT_123971 [Selaginella moellendorffii]
 gi|300145899|gb|EFJ12572.1| hypothetical protein SELMODRAFT_123971 [Selaginella moellendorffii]
          Length = 585

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVA 74
            ++A +S     K      G++    + +   V   KI+AL+     +I K  +A  +V 
Sbjct: 403 TVDAKSSKVVGKKLTGYRKGSIINRLDLNDF-VTSTKIEALKEEVKKMISKDTSAKGLVF 461

Query: 75  YHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGL 123
             F S L  +  +F               L +    I  + N+ +  L      + G  L
Sbjct: 462 SQFTSMLDLIGYSFELAGVKCVKLDGGMSLSQRSTAIDTFRNDPECKLFLMSLKAGGVAL 521

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + +     WW+     Q  +RI      + G  + + V   + +N+++E +L+ 
Sbjct: 522 NLTV-ASYIFLMDPWWNPAVEHQAQDRI-----HRIGQYKPIRVTRFVIENSVEERILKL 575

Query: 184 LRTKSTIQD 192
              K  + +
Sbjct: 576 QEKKQLVFE 584


>gi|251770931|gb|EES51516.1| putative helicase, Snf2 family [Leptospirillum ferrodiazotrophum]
          Length = 1068

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCT 100
              + I  L+ I E       I++   F   L   ++A P          G T + +    
Sbjct: 891  SSKFILTLDKIAEGVEEGHKILLFSQFTGMLDLFEEALPSRGISTVRLDGSTPISERQKR 950

Query: 101  IQEWNE--GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +       P +  +   + G GL L    + +  +  WW+ +   Q  +R       
Sbjct: 951  VALFQSDAPDSPRVFLSSLKAGGVGLTLTK-ADYVFHYDPWWNPQVEAQASDR-----SH 1004

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R+VF+Y  + + T++E V    + K  I   LL  
Sbjct: 1005 RIGQTRSVFIYRFLVRGTVEERVQDLKKVKRDIFSRLLGG 1044


>gi|156379282|ref|XP_001631387.1| predicted protein [Nematostella vectensis]
 gi|156218426|gb|EDO39324.1| predicted protein [Nematostella vectensis]
          Length = 1128

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
            E    +    K++ L+ ++ +  A    +++       L  L+K             G 
Sbjct: 734 PEARLIQYDCGKLQTLDNLLRRLKAGKHRVLIFTQMTRMLDVLEKFLNYHGYVYLRLDGS 793

Query: 93  TLDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +    +   +N   +I        S G G+NL  G + +VF+   W+     Q  +R
Sbjct: 794 TRVEQRQILMDRFNADSRIFCFILSTRSGGLGVNLT-GADTVVFYDSDWNPTMDAQAQDR 852

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 853 C-----HRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDIAIEG 894


>gi|18043584|gb|AAH20056.1| Hells protein [Mus musculus]
          Length = 275

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       ++V     S L  L                  +  + 
Sbjct: 32  VTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSER 91

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N +  + L      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 92  EKNIYSFNTDPDVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 145

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 146 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 184


>gi|301788109|ref|XP_002929471.1| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Ailuropoda melanoleuca]
          Length = 911

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 639 EEESGKLQVLMKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYTYTRLDGQTPIS 698

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 699 QRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 757 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTK 798


>gi|281347253|gb|EFB22837.1| hypothetical protein PANDA_019651 [Ailuropoda melanoleuca]
          Length = 810

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 538 EEESGKLQVLMKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYTYTRLDGQTPIS 597

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 598 QRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 655

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 656 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTK 697


>gi|168019895|ref|XP_001762479.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162686212|gb|EDQ72602.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1780

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ +  +     ++       L  L+              G 
Sbjct: 1036 PDRRLLQFDCGKLQELAVLLRRLKSQGHRALIFTQMTKMLDVLESFINLYGYTYMRLDGS 1095

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + Q +N   KI L      S G G+NL  G + ++F+   W+     Q  +R
Sbjct: 1096 TKPEQRQVLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDLQAQDR 1154

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1155 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRILDDLVIQS 1196


>gi|159487869|ref|XP_001701945.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158281164|gb|EDP06920.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 3251

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 51   VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDP 98
            +   K+K L+ ++ K   N + +++   + + L  L+              G T +D+  
Sbjct: 876  LSSAKVKQLDELLPKLKENGSRVLLFSQWTTVLDLLEWYLSLRGYTYCRLDGSTNVDERL 935

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N    P  +      + G GLNL  G + ++   + ++ +     I+R    R 
Sbjct: 936  KLVDAFNASDSPYFVFLLSTRAGGQGLNLT-GADTVILHDVDFNPQ-----IDRQAEDRA 989

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  R V VY LI + T+D  +      K  +   +L  +  E
Sbjct: 990  HRLGQTRTVTVYRLITRGTVDSNIQAIAERKLALDHAVLGDVAVE 1034


>gi|11994423|dbj|BAB02425.1| helicase-like protein [Arabidopsis thaliana]
          Length = 2061

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L +++ K        ++       L  L+              G 
Sbjct: 1071 PDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1130

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   KI L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1131 TPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1189

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1190 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1230


>gi|221486521|gb|EEE24782.1| DNA repair helicase rad5,16, putative [Toxoplasma gondii GT1]
          Length = 1667

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 52   HDEKIKAL-EVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDK 96
               KI+AL + ++E   +      +V   F S L  ++    +G             + +
Sbjct: 1493 SSTKIEALYQELLEIEREDTTVKSLVFSQFCSMLDLIEWRLKKGGIHCAKMVGSMSIVSR 1552

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    N+  + +L     + G GLNLQ   + +     WW+     Q I+R      
Sbjct: 1553 SNVLYAFNNDPSLKVLLISLKAGGEGLNLQI-ASRIFLMDPWWNPAAEMQAIQR-----A 1606

Query: 157  RQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G + + V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 1607 HRIGQRHKEVIAIRFIAEKTIEERILQLQEKKQLVFDGTVGA 1648


>gi|113955603|ref|YP_731958.1| helicase [Synechococcus sp. CC9311]
 gi|113882954|gb|ABI47912.1| helicase, Snf2 family protein [Synechococcus sp. CC9311]
          Length = 1064

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVH---DE 54
            Q+ LY     + ++A   A              K  Q+ N      +E+   E       
Sbjct: 829  QKSLYAKTVEDTLDAIARAPRGKRHGQVLGLLTKLKQICNHPALALKEQGASEDFLKRSV 888

Query: 55   KIKALEVIIEK--ANAAPIIVAYHF----NSDLARLQKA------FPQGRTLDKDPC-TI 101
            K++ LE I+++        ++   F          LQ+       F  G T   +    +
Sbjct: 889  KLQRLEEILDEVVEAGDRALLFTQFAEWGKLLQDYLQRRWRSEVPFLSGSTSKSERQAMV 948

Query: 102  QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + E      L      + G GLNL    + +     WW+     Q  +R       + 
Sbjct: 949  DRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYRI 1002

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1003 GQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDII 1038


>gi|298571706|gb|ADI87858.1| hypothetical protein AKSOIL_0350 [uncultured bacterium Ak20-3]
          Length = 918

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 72/176 (40%), Gaps = 17/176 (9%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP 89
             Q+ N      +  +W++    K +    ++ +A  +   I++   +   +  +Q    
Sbjct: 730 LKQICNHPALIRKTTNWRDGESGKFELFRSLLSEALESNHKIVIYSQYLQMIEIIQNYLK 789

Query: 90  Q---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           +         G++  +     +   + ++ +      + G G++L    ++++ +  WW+
Sbjct: 790 ELKVGHVVLTGKSQKRGDIVKKFQTDPEVKVFVGSLLAGGLGIDLT-AASVVIHYDRWWN 848

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +  Q  +R+      + G K    V  L+++ T++E + + +  K+++ +  L 
Sbjct: 849 ASKENQATDRV-----HRIGQKNFTQVIKLVSRGTLEEKIDRMIAEKASLFNRFLE 899


>gi|114631883|ref|XP_001151005.1| PREDICTED: helicase, lymphoid-specific isoform 6 [Pan troglodytes]
          Length = 882

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 639 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 698

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 699 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 752

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 753 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 791


>gi|70982334|ref|XP_746695.1| SNF2 family helicase/ATPase (Swr1) [Aspergillus fumigatus Af293]
 gi|74666640|sp|Q4WAS9|SWR1_ASPFU RecName: Full=Helicase swr1
 gi|66844319|gb|EAL84657.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus fumigatus
            Af293]
 gi|159123062|gb|EDP48182.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus fumigatus
            A1163]
          Length = 1695

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1368 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1427

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1428 TKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1486

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + D+++ 
Sbjct: 1487 C-----HRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVIQ 1527


>gi|145352136|ref|XP_001420413.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580647|gb|ABO98706.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1769

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 61/248 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-----------SKTVKCLQLANGAVYYDEEKHWKE 50
            K Y  F+     + + + + A               +      +L +       +   K+
Sbjct: 1451 KMYDAFESS---EAKDQAVSAIEGGGGAEGAAQHVFTTLQYLRKLCSHPKLVVSDGASKK 1507

Query: 51   VH----DEKIKALEVII-----------EKANA------------APIIVAYHFNSDLAR 83
             +      K  AL+ I+           EK+N               ++V     S L  
Sbjct: 1508 FNPEMRSPKFDALKQILIDCGIGVDLEEEKSNGDEGKPNPASGAGHRVLVFSQLKSLLDL 1567

Query: 84   LQKAFPQGRTLD-------------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            ++      +  D             +    ++++N +  I +L       G GLNL    
Sbjct: 1568 VENELFTTQMRDVSWLRLDGSIPPSQRFDVVRKFNADPSIDVLLLTTHVGGLGLNLT-SA 1626

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +VF    W+ ++  Q ++R       + G ++ V VY ++ + T++E ++   R K  
Sbjct: 1627 DTVVFLEHDWNPQKDLQAMDR-----AHRLGQRKTVNVYRILTRGTLEEKIMSLQRFKLD 1681

Query: 190  IQDLLLNA 197
            + + ++NA
Sbjct: 1682 VANAVVNA 1689


>gi|145595877|ref|YP_001160174.1| non-specific serine/threonine protein kinase [Salinispora tropica
            CNB-440]
 gi|145305214|gb|ABP55796.1| Non-specific serine/threonine protein kinase [Salinispora tropica
            CNB-440]
          Length = 1050

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 22/212 (10%)

Query: 2    KQYHKFQRELYCDLQGEN-IEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y     ++   ++    IE      +   +  Q+ N   +   +         K+  L
Sbjct: 819  ALYRAVVDDMMAQIESSEGIERRGLVLAAMTRLKQVCNHPAHLLRDNSALVGRSGKLARL 878

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNE 106
            E I+++        ++   +      L+                G         +  +  
Sbjct: 879  EEILDEVLVAGEKALLFTQYAEFGGMLRGHLSARFGQETLFLHGGVGKADRDAMVTRFQS 938

Query: 107  GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               P L      + G GL L    N +V    WW+     Q  +R       + G +R V
Sbjct: 939  PDGPALFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQRRRV 992

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V   +   T++E V   +  K  +   ++ A
Sbjct: 993  QVRKFVCAGTVEEKVAALIADKRRLASTVVGA 1024


>gi|302814039|ref|XP_002988704.1| hypothetical protein SELMODRAFT_128555 [Selaginella moellendorffii]
 gi|300143525|gb|EFJ10215.1| hypothetical protein SELMODRAFT_128555 [Selaginella moellendorffii]
          Length = 669

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVA 74
            ++A +S     K      G++    + +   V   KI+AL+     +I K  +A  +V 
Sbjct: 487 TVDAKSSKVVGKKLTGYRKGSIINRLDLNDF-VTSTKIEALKEEVKKMISKDTSAKGLVF 545

Query: 75  YHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGL 123
             F S L  +  +F               L +    I  + N+ +  L      + G  L
Sbjct: 546 SQFTSMLDLIGYSFELAGVKCVKLDGGMSLSQRSTAIDTFRNDPECKLFLMSLKAGGVAL 605

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + +     WW+     Q  +RI      + G  + + V   + +N+++E +L+ 
Sbjct: 606 NLTV-ASYIFLMDPWWNPAVEHQAQDRI-----HRIGQYKPIRVTRFVIENSVEERILKL 659

Query: 184 LRTKSTIQD 192
              K  + +
Sbjct: 660 QEKKQLVFE 668


>gi|302656074|ref|XP_003019794.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
 gi|291183564|gb|EFE39170.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
          Length = 881

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    I++   F   L  L+    Q R              D+        N+    +  
Sbjct: 651 SKGHKILIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNNDPDYRIFL 710

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 711 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 764

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            TI++ +L+R  +K  ++ L++   K
Sbjct: 765 GTIEQTLLERAGSKRRLEKLVIQKGK 790


>gi|114631891|ref|XP_001150939.1| PREDICTED: helicase, lymphoid-specific isoform 5 [Pan troglodytes]
          Length = 708

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 465 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 524

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 525 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 578

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 579 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 617


>gi|42564102|ref|NP_187887.3| PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA
            binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|30984019|gb|AAP40633.1| photoperiod independent early flowering1 [Arabidopsis thaliana]
          Length = 2055

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L +++ K        ++       L  L+              G 
Sbjct: 1065 PDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1124

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   KI L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1125 TPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1183

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1184 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1224


>gi|74008357|ref|XP_865363.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform b
           isoform 7 [Canis familiaris]
          Length = 1033

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 392 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 452 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 511

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LN 196
           + 
Sbjct: 626 IQ 627


>gi|15220993|ref|NP_172004.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|332189671|gb|AEE27792.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
          Length = 833

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI+AL      ++E+  +A  IV   F S L  +     +            T+   
Sbjct: 660 TSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAAR 719

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I ++  +    +      + G  LNL    ++ +    WW+       +ER    R 
Sbjct: 720 DTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMM-DPWWN-----PAVERQAQDRI 773

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + + V   I +NT++E +L+  + K  + +
Sbjct: 774 HRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFE 809


>gi|42407261|dbj|BAD10847.1| lymphoid specific helicase variant4 [Homo sapiens]
 gi|119570421|gb|EAW50036.1| helicase, lymphoid-specific, isoform CRA_k [Homo sapiens]
          Length = 708

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 465 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 524

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 525 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 578

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 579 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 617


>gi|290997882|ref|XP_002681510.1| TATA-binding protein-associated factor 172 [Naegleria gruberi]
 gi|284095134|gb|EFC48766.1| TATA-binding protein-associated factor 172 [Naegleria gruberi]
          Length = 1788

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 74/208 (35%), Gaps = 37/208 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    +E+    QG ++   N + K +   QL N                         
Sbjct: 1530 MYESVTQEI--KQQGLDVRDVNLSPKLLSLKQLLNDCGIGAGNSD--------------- 1572

Query: 63   IEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGK 108
            ++ +N   +++       L  +Q                       K    + ++N +  
Sbjct: 1573 VDSSNQHRVLIFCQLKQMLDIIQNELFAKYMPNVTFMRLDGDVETTKRYEIVTKFNSDPT 1632

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +L       G GLNL  G + ++F    W+     Q ++R       + G K+ V VY
Sbjct: 1633 IDVLLLTTKIGGLGLNLT-GADTVIFVEHDWNPSADLQAMDR-----AHRIGQKKVVNVY 1686

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI +NT++E ++   + K+ I   ++N
Sbjct: 1687 RLITRNTLEEKIMGLQKFKTNISKSVIN 1714


>gi|325661424|ref|ZP_08150050.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472373|gb|EGC75585.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 493

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 14/197 (7%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+    ++   +       F   +K +K  ++ +G V   +     +    K   LE 
Sbjct: 299 KYYNDILNDIKEHI--NEWSKFEFTAKLMKLREVVSGFV-IQKNGDVTDFKTNKDNILED 355

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            + +     +IV   F  ++ +L + F       +T ++D   I+ +  G I LLFAHP 
Sbjct: 356 TLNEIGDKQVIVWCQFIHEIEKLAEKFDGTALTSKTKNRD-DIIRSFKNGDIKLLFAHPK 414

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G          +++SL +  EE +Q  +RI      + G         L  +NTID
Sbjct: 415 LLGKGATFTN-CTYNIYYSLSFSYEEFKQSQDRI-----HRIGQANKCTYIILQGKNTID 468

Query: 178 ELVLQRLRTKSTIQDLL 194
           + +   L+ K    D L
Sbjct: 469 KRIYNSLQRKGNAVDEL 485


>gi|302794729|ref|XP_002979128.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
 gi|300152896|gb|EFJ19536.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
          Length = 851

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI AL  ++EK  A       +V   F++ L  ++    +               K 
Sbjct: 675 PSAKINALISMLEKTRAKDPNIKSVVFSQFSTMLKLIEGPLQKAGFKFVKLEGGMSASKR 734

Query: 98  PCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +     G   +      + G GLNL    N+ +    WW+    +Q ++R+   
Sbjct: 735 EENMEAFKSTRSGSPTVFLLSLKAAGVGLNLVTASNVFMM-DPWWNPAVEEQAMDRV--- 790

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + G  R V V+ LIA ++I+E +LQ    K  
Sbjct: 791 --HRLGQTRDVHVFRLIATDSIEERLLQVQEKKRA 823


>gi|74008359|ref|XP_538168.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 1 [Canis familiaris]
          Length = 1054

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|114631873|ref|XP_001151526.1| PREDICTED: helicase, lymphoid-specific isoform 14 [Pan troglodytes]
          Length = 923

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 641 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 700

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 701 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 754

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 755 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 793


>gi|324507205|gb|ADY43057.1| DNA repair and recombination protein RAD54-like protein [Ascaris
           suum]
          Length = 755

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 23/169 (13%)

Query: 44  EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLA---RLQK-------AFP 89
            +K ++     K+K L+ ++    +  N   ++V  ++   +     L K          
Sbjct: 498 SDKTFEPAFSGKMKVLDYLLAVTKQTTNDKFVLV-SNYTQTIDSFVELCKLRRYGYVRLD 556

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              ++ +    ++++N+      +      + G GLNL  G N LV F   W+     Q 
Sbjct: 557 GSSSIKQRAKIVEKFNDPTSSEYVFLLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQA 615

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + RI      + G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 616 MARIW-----RDGQKKHCFIYRLLATGTIEEKMFQRQTHKKALSSCVVD 659


>gi|255082185|ref|XP_002508311.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523587|gb|ACO69569.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1126

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L  I+ K     +++  ++   L  +Q                 ++ K    ++ 
Sbjct: 542 AVLARLLAILRKETKDRVVIISNYTQTLDLIQTLCRNNRYPFCRLDGSTSISKRQKLVKR 601

Query: 104 WNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G G+NL  GGN LV F   W+    +Q   R       + G 
Sbjct: 602 FNDPAEDCFVFLLSSKAGGCGINL-IGGNRLVLFDPDWNPANDKQAAARCW-----RDGQ 655

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           K+  ++Y  +A  +I+E V QR  +K ++Q+++
Sbjct: 656 KKKCYLYRFLATGSIEEKVFQRQLSKESLQNVV 688


>gi|73998080|ref|XP_859428.1| PREDICTED: similar to helicase, lymphoid-specific isoform 8 [Canis
           familiaris]
          Length = 805

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 574 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 631

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 632 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 685

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 686 VYRLVTANTIDQKIVERAAAKRKLEKLII 714


>gi|317129655|ref|YP_004095937.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474603|gb|ADU31206.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
          Length = 942

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 24/213 (11%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFNSA-SKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKA 58
            Y     EL  DL   + +E  +       +  Q+ N   ++ +E +    +    K   
Sbjct: 716 LYEAVVEELLEDLPSYSMLEKRSRLFQAITQLKQICNHPAHFTKESNIANMKGRSNKWDT 775

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCTIQEW 104
              ++   +  A   ++   +      LQKA              Q    D+        
Sbjct: 776 CMSLLAHNQVEAKQTLLFTQYRYIGNLLQKAIAKELNTTVPFFHGQLSMKDRQNMITSFQ 835

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E + P++     + G GLNL    + ++ +  WW+     Q  +R+      + G KR 
Sbjct: 836 AERRYPVMIISLRAGGFGLNLTN-ASEVIHYDRWWNPAVEDQATDRV-----YRIGQKRD 889

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  I++ TI++ +   L+ K  +Q  LL +
Sbjct: 890 VTVHTFISEGTIEQKLDNLLQEKKALQQSLLQS 922


>gi|66811390|ref|XP_639875.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60466825|gb|EAL64871.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 989

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 32/169 (18%)

Query: 53  DEKIKALEVIIEK---ANAAPIIVAYHFNSDL---ARLQKAFPQGRTL-------DKDPC 99
             K+  +E +I++    N   ++V  +F   L    RL K               D    
Sbjct: 629 SGKLLFVESLIKQLKPMNEKLVLV-SNFTKTLDVFERLCKRLSIDTLRLDGDVKADSRQA 687

Query: 100 TIQEWNEG------------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            + ++N              +  +      + G G+NL  GGN LV +   W+     Q 
Sbjct: 688 LVDKFNSSTQNVSSSKSSSSQYQVFLLSAKAGGVGINL-IGGNHLVLYDPDWNPAIDIQA 746

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +ERI      + G  + VF+Y L +  TI+E + QR   K +I + +++
Sbjct: 747 MERIW-----REGQTKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVD 790


>gi|324998496|ref|ZP_08119608.1| helicase [Pseudonocardia sp. P1]
          Length = 595

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEK----HWKEVHDEKIKALEVIIEKANAAP 70
           L   +    +  +   +  Q+         E           D   + +  I++   AA 
Sbjct: 380 LGSGSARRGHVLALLTRLKQICVHPALAGAEDLEYSGRSASFDRLTELVTEIVDNDEAAL 439

Query: 71  IIVAYHFNSDL------ARLQKAFP---QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
           +   Y    DL       RL  A P    G +       + E++ G   P+L     + G
Sbjct: 440 VFTQYRTAGDLLVSRLSDRLGMAVPFLHGGLSRPARERLVAEFSGGAGPPVLILSLRAAG 499

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    ++L     WW+     Q  +R       + G  R V V+    + T++EL+
Sbjct: 500 TGLTLTRATHVL-HLDRWWNPAVEAQASDR-----AHRIGQTRPVTVHTFTTRGTVEELI 553

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            +  R K+ + D  L   +  T+ 
Sbjct: 554 AELHRGKAGLADAALGQAEASTVG 577


>gi|224128974|ref|XP_002320469.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222861242|gb|EEE98784.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 265

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI+AL      + E+  +A  IV   F S L  +  +  +             L   
Sbjct: 92  TSTKIEALREEIRFMAERDGSAKGIVFSQFTSFLDLIHYSLQKSGISCVQLVGSMSLAAR 151

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +  +    +      + G  LNL    + +     WW+       +ER    R 
Sbjct: 152 DAAIKRFAEDPDCKIFLMSLKAGGVALNLTVASH-VFLMDPWWN-----PAVERQAQDRI 205

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + + +   + +NT++E +LQ    K  + +  +  
Sbjct: 206 HRIGQYKPIRIVRFVIENTVEERILQLQEKKELVFEGTVGG 246


>gi|302683608|ref|XP_003031485.1| hypothetical protein SCHCODRAFT_77313 [Schizophyllum commune H4-8]
 gi|300105177|gb|EFI96582.1| hypothetical protein SCHCODRAFT_77313 [Schizophyllum commune H4-8]
          Length = 634

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 41/212 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +F R+    L+   ++  +S++K  K +++                       L+ I +
Sbjct: 430 DRFCRD-CAMLKAMRVDGMSSSAKLRKIMEI-----------------------LDEIED 465

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----DKDPCTIQEW------NEGKIPLLF 113
           +      IV   F S L  ++    +          K    ++E           I ++ 
Sbjct: 466 RGEGEKTIVFSQFTSMLDLIEPFLKKRGVRFVRYDGKMRADMREHSLKQIRENESIKVIL 525

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   GLNL    N ++   +WW+     Q  +R       + G +R V +Y L   
Sbjct: 526 ISFKAGSTGLNLT-ACNNVILVDMWWNPALEDQAFDR-----AHRFGQQRPVNIYKLKID 579

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +T+++ +L     K  +    L+  K + + +
Sbjct: 580 DTVEDRILALQEKKRELTKAALSGEKVKNLRL 611


>gi|302500427|ref|XP_003012207.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
 gi|291175764|gb|EFE31567.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
          Length = 881

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    I++   F   L  L+    Q R              D+        N+    +  
Sbjct: 651 SKGHKILIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINSFNNDPDYRIFL 710

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 711 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 764

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            TI++ +L+R  +K  ++ L++   K
Sbjct: 765 GTIEQTLLERAGSKRRLEKLVIQKGK 790


>gi|255567695|ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223535886|gb|EEF37546.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 874

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI+AL      ++E+  +A  IV   F S L  +  +  +             L   
Sbjct: 701 TSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLISYSLHKSGINCVQLVGSMSLPAR 760

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +  +    +      + G  LNL    + +     WW+       +ER    R 
Sbjct: 761 DNAIKRFSEDPNCKIFLMSLKAGGVALNLTVASH-VFLMDPWWN-----PAVERQAQDRI 814

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + + +   + +NTI+E +LQ    K  + +  L  
Sbjct: 815 HRIGQYKPIRIVRFVIENTIEERILQLQEKKELVFEGTLGG 855


>gi|222629381|gb|EEE61513.1| hypothetical protein OsJ_15806 [Oryza sativa Japonica Group]
          Length = 934

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
             +   K +AL  ++     +   +++   + + L  L+          +    G  + +
Sbjct: 708 HVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTPVTE 767

Query: 97  DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N  + I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 768 RQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQMDRQAEDRC---- 822

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 823 -HRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 863


>gi|114631889|ref|XP_001151071.1| PREDICTED: helicase, lymphoid-specific isoform 7 [Pan troglodytes]
          Length = 740

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 497 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 556

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 557 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 610

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 611 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 649


>gi|313233227|emb|CBY24342.1| unnamed protein product [Oikopleura dioica]
          Length = 1202

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 39/231 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV----------------YYDEEKH 47
           Y KF +E    L  E ++  +S        +L N                   YY + K 
Sbjct: 429 YIKFVKEKKRLLDTEGMQGPSSLQAITALKKLCNHPALVYPLINNPEYKFLQPYYKDFKP 488

Query: 48  WKEVH--DEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
            K       K   +  +  I +       ++  ++   L   Q+                
Sbjct: 489 DKFDPTLSGKFLLLDLILAITKMHTDDKFVLVSNYTQTLDTCQELCKLRGYGYVRLDGTM 548

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            + K    + E+N  +    +      + G GLNL  G N L+ F   W+     Q + R
Sbjct: 549 AIKKRSKLVAEFNSPESSDYVFMLSSKAGGCGLNL-IGANRLIMFDPDWNPANDDQAMAR 607

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +      + G K+  F+Y L+A  TI+E +LQR   K  +  ++++A + +
Sbjct: 608 VW-----RDGQKKRCFIYRLVAAGTIEEKMLQRQLHKKALSGVVVDAQEAD 653


>gi|322499633|emb|CBZ34707.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1092

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 49   KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDK 96
            K +H  K+ A+   IEK      ++V   F S L  L + + Q R           TL +
Sbjct: 919  KPLHGTKLDAIANYIEKVPKDEKVVVFSQFGSMLD-LTQYWLQRRSIRAVKLCGSLTLTQ 977

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +Q + ++  + ++     + G GLNLQ   N +V    WW+     Q ++R     
Sbjct: 978  RQSVLQAFLHDQNVRVILISLKAGGEGLNLQV-ANHVVLTDPWWNPAVEMQAVQR----- 1031

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V     + +++++E +      K  + +  ++ 
Sbjct: 1032 AHRIGQTRPVHAVRFVTEHSVEERMADLQDKKMLVFEGTIDG 1073


>gi|240272910|gb|EER36435.1| lymphocyte-specific helicase [Ajellomyces capsulatus H143]
 gi|325095672|gb|EGC48982.1| lymphocyte-specific helicase [Ajellomyces capsulatus H88]
          Length = 983

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 43  DEEKHWKEV---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------- 86
           D+  H  +       K+  L+ +I    +    I++   F + L  LQ            
Sbjct: 722 DDPSHIDDTLITSSGKMLLLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNCC 781

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +       IQ +N +    +      + G G+NL    + ++ F   W+ ++  
Sbjct: 782 RIDGAVSQVDRQAQIQAFNTDPDYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQDL 840

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Q        R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 841 QA-----QDRAHRIGQTKPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGK 889


>gi|42407265|dbj|BAD10849.1| lymphoid specific helicase variant6 [Homo sapiens]
 gi|119570418|gb|EAW50033.1| helicase, lymphoid-specific, isoform CRA_h [Homo sapiens]
          Length = 740

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 497 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 556

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 557 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 610

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 611 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 649


>gi|73998076|ref|XP_859353.1| PREDICTED: similar to helicase, lymphoid-specific isoform 6 [Canis
           familiaris]
          Length = 835

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 604 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 661

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 662 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 715

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 716 VYRLVTANTIDQKIVERAAAKRKLEKLII 744


>gi|224090059|ref|XP_002308925.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222854901|gb|EEE92448.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1483

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T+      ++++     I +      + G G+NL    + ++F+   W+     
Sbjct: 1206 RLDGSSTIMDRRDMVRDFQLRNDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDL 1264

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q ++R       + G  + V VY LI + T++E +LQR   K T+Q L++  
Sbjct: 1265 QAMDR-----AHRLGQTKDVTVYRLICKETVEEKILQRASQKHTVQQLVMTG 1311


>gi|296220834|ref|XP_002756505.1| PREDICTED: lymphoid-specific helicase isoform 7 [Callithrix
           jacchus]
          Length = 707

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 464 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 523

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 524 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 577

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 578 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 616


>gi|217076139|ref|YP_002333855.1| helicase [Thermosipho africanus TCF52B]
 gi|217035992|gb|ACJ74514.1| helicase [Thermosipho africanus TCF52B]
          Length = 835

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 26  ASKTVKCLQLAN-GAVYYDEEKHWKEVHDEKIKALEVI-IEKANAA-PIIVAYHFNSDLA 82
               +K LQ+ + GA Y+DE       H  K+  L+ + IE  N     ++   F     
Sbjct: 637 LGLAIKLLQVCDFGADYFDEN---FYKHSGKLNKLKDLMIEIKNKKEKALIFTKFIMTQQ 693

Query: 83  RLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            ++           +       ++     ++++N+GKI +L  +P   G GLNL    N 
Sbjct: 694 IIKAFLRNELGIESEILNGTVPIETRNYIVKQFNDGKIDVLIINPRVGGVGLNL-VAANH 752

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLR 185
           ++ ++  W+     Q  +R       + G  + V+VYY  ++       TI+E  ++ L 
Sbjct: 753 VIHYTPEWNPAVTSQATDR-----AYRIGQDKDVYVYYFFSKFRNNHNKTIEEYFMKLLE 807

Query: 186 TKSTIQDLLLN 196
            K  I+++LL+
Sbjct: 808 RKKQIKNILLD 818


>gi|301768186|ref|XP_002919520.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Ailuropoda melanoleuca]
          Length = 838

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 606 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSK 665

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 666 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 719

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 720 EKIFQRQSHKKALSSCVVD 738


>gi|281351942|gb|EFB27526.1| hypothetical protein PANDA_008144 [Ailuropoda melanoleuca]
          Length = 716

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 485 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSK 544

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 545 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 598

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 599 EKIFQRQSHKKALSSCVVD 617


>gi|73977923|ref|XP_532592.2| PREDICTED: similar to DNA repair and recombination protein
           RAD54-like (RAD54 homolog) (hRAD54) (hHR54) [Canis
           familiaris]
          Length = 907

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 675 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSK 734

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 735 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLSAGTIE 788

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 789 EKIFQRQSHKKALSSCVVD 807


>gi|134106523|ref|XP_778272.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50260975|gb|EAL23625.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1198

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 46   KHWKEVHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
                 V   K++AL    E I ++   A  +V   F S L  ++    +           
Sbjct: 1009 GKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGT 1068

Query: 95   ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +   TI+E+        +L     + G GLNL    N +     WW+    QQ I+
Sbjct: 1069 MSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTM-ANYVFLMDTWWNEAIEQQAID 1127

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G  + V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1128 RV-----HRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1169


>gi|156082073|ref|XP_001608529.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801100|gb|EDL42505.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 3241

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
            L    V  DE K        KI  LE ++ +       +++       L  L        
Sbjct: 1675 LCCEPVDKDEYKERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 1734

Query: 86   ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      + +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 1735 FKHQRLDGTMSKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 1793

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 1794 PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 1848

Query: 201  E 201
            +
Sbjct: 1849 K 1849


>gi|126342338|ref|XP_001373609.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1,
           [Monodelphis domestica]
          Length = 1010

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 365 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 424

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+ AL+ ++ K     + +++       L  L+             
Sbjct: 425 PPYTTDTHLVNNSGKMVALDKLLSKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 484

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 485 DGQTPHEEREEAIDTFNAPNSTKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 543

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT+++ +++R   K  +  +++ 
Sbjct: 544 AMDR-----AHRIGQKKPVRVFRLITDNTVEDRIVERAEIKLRLDSIVIQ 588


>gi|224058089|ref|XP_002191829.1| PREDICTED: RAD54-like (S. cerevisiae) [Taeniopygia guttata]
          Length = 757

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 23/169 (13%)

Query: 44  EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFP 89
             K  +     K+  L+ I+      +N   ++V  ++   L   +K             
Sbjct: 499 STKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLV-SNYTQTLDLFEKLCRSRRYLYVRLD 557

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q 
Sbjct: 558 GTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQA 616

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 617 MARVW-----RDGQKKMCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 660


>gi|312922352|ref|NP_001099924.2| transcription termination factor 2 [Rattus norvegicus]
          Length = 1142

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRT 93
            D+ +   +V    +  LE I +   +   ++   + S L          RL  A   G  
Sbjct: 965  DDIRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLRKNRLTYATIDGSV 1023

Query: 94   LDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI
Sbjct: 1024 NPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI 1082

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1083 -----YRVGQEKDVVMHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1123


>gi|58258561|ref|XP_566693.1| DNA repair protein RAD5 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|74687780|sp|Q5KPG8|RAD5_CRYNE RecName: Full=DNA repair protein RAD5
 gi|57222830|gb|AAW40874.1| DNA repair protein RAD5, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1198

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 46   KHWKEVHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
                 V   K++AL    E I ++   A  +V   F S L  ++    +           
Sbjct: 1009 GKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGT 1068

Query: 95   ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +   TI+E+        +L     + G GLNL    N +     WW+    QQ I+
Sbjct: 1069 MSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTM-ANYVFLMDTWWNEAIEQQAID 1127

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G  + V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1128 RV-----HRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1169


>gi|213983091|ref|NP_001135693.1| helicase, lymphoid-specific [Xenopus (Silurana) tropicalis]
 gi|197246289|gb|AAI69179.1| Unknown (protein for MGC:189674) [Xenopus (Silurana) tropicalis]
 gi|197246404|gb|AAI68798.1| Unknown (protein for MGC:188967) [Xenopus (Silurana) tropicalis]
          Length = 840

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K   L+ ++ +       +++       L  L                  +      
Sbjct: 602 SSGKFLLLDRLLPEMKKRGHKVLIFSQMTMMLDILMDYCYYKKFNFCRLDGSMSYSDREE 661

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++++N E  + +      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 662 NMRKFNTEPDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQADLQAQDRC-----HR 715

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  R V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 716 IGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKLVI 752


>gi|193596661|ref|XP_001945595.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like
           [Acyrthosiphon pisum]
          Length = 1048

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 50/235 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQLAN-------------G 38
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL               G
Sbjct: 390 VKVYVGLSKLQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGAEPG 449

Query: 39  AVYYDEEKHW-----KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----- 88
             Y  +E          V D+ +KAL+        + ++V       +  L+        
Sbjct: 450 PPYTTDEHIVFNCGKMVVFDKLLKALKE-----QDSRVLVFSQMTRMMDILEDYMHWKGY 504

Query: 89  ----PQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G+T  +D    I E+NE   K  +      + G G+NL    ++++ +   W+ 
Sbjct: 505 NYCRLDGQTPHEDRQRQINEYNEPNSKKFVFILSTRAGGLGINL-ATADVVIIYDSDWNP 563

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   Q ++R       + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 564 QMDLQAMDR-----AHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQ 613


>gi|316968996|gb|EFV53166.1| putative SNF2 family N- domain protein [Trichinella spiralis]
          Length = 1667

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+++L  ++   +A     ++       L  L+                  +++    ++
Sbjct: 1268 KLQSLSALLRRLQAEGHRCLIFTQMARMLDILEAFLSYHGYMYLRLDGATNIERRQMLME 1327

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1328 RFNHDKKILCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1381

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETIH 204
             R V +Y LI + TI+E +L +   K  + +L ++    K +  H
Sbjct: 1382 TRDVHIYRLICERTIEENILLKATQKRKLGELAIDEGGFKADFFH 1426


>gi|316963964|gb|EFV49303.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 1024

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K+++L  ++   +A     ++       L  L+                  +++    ++
Sbjct: 625 KLQSLSALLRRLQAEGHRCLIFTQMARMLDILEAFLSYHGYMYLRLDGATNIERRQMLME 684

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 685 RFNHDKKILCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 738

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETIH 204
            R V +Y LI + TI+E +L +   K  + +L ++    K +  H
Sbjct: 739 TRDVHIYRLICERTIEENILLKATQKRKLGELAIDEGGFKADFFH 783


>gi|297829816|ref|XP_002882790.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297328630|gb|EFH59049.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2057

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L +++ K        ++       L  L+              G 
Sbjct: 1068 PDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1127

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++  T+ Q +N   KI L      S G G+NL  G + ++F+   W+    QQ  +R
Sbjct: 1128 TPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDR 1186

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1187 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1227


>gi|255548778|ref|XP_002515445.1| chromodomain helicase DNA binding protein, putative [Ricinus
           communis]
 gi|223545389|gb|EEF46894.1| chromodomain helicase DNA binding protein, putative [Ricinus
           communis]
          Length = 1470

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT 100
              K++ L+ ++ +       +++   F   L  L         Q     G+    +   
Sbjct: 603 SSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 662

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 663 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 716

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I
Sbjct: 717 RLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNI 762


>gi|38344264|emb|CAE02069.2| OSJNBa0005N02.1 [Oryza sativa Japonica Group]
 gi|38345412|emb|CAE03103.2| OSJNBa0017B10.18 [Oryza sativa Japonica Group]
 gi|116309716|emb|CAH66762.1| OSIGBa0158F05.11 [Oryza sativa Indica Group]
          Length = 863

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
             +   K +AL  ++     +   +++   + + L  L+          +    G  + +
Sbjct: 683 HVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTPVTE 742

Query: 97  DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N  + I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 743 RQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQMDRQAEDRC---- 797

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 798 -HRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 838


>gi|326473788|gb|EGD97797.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
 gi|326485394|gb|EGE09404.1| SNF2 family helicase/ATPase PasG [Trichophyton equinum CBS 127.97]
          Length = 861

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    +++   F   L  L+    Q R              D+        N+    +  
Sbjct: 631 SKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNNDPDYRIFL 690

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 691 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 744

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            TI++ +L+R  +K  ++ L++   K
Sbjct: 745 GTIEQTLLERAGSKRRLEKLVIQKGK 770


>gi|218195384|gb|EEC77811.1| hypothetical protein OsI_17009 [Oryza sativa Indica Group]
          Length = 909

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
             +   K +AL  ++     +   +++   + + L  L+          +    G  + +
Sbjct: 683 HVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTPVTE 742

Query: 97  DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N  + I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 743 RQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQMDRQAEDRC---- 797

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 798 -HRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 838


>gi|190345390|gb|EDK37263.2| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 32/206 (15%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y +   E     +    E F S     + ++  NG                KI+    ++
Sbjct: 884  YDEEAIEDLFSPKSRAPEKFTSTDIISRLIEETNGF-----------TPSTKIEKCIELV 932

Query: 64   EK----ANAAPIIVAYHFN--SDLARL---QKAFPQGR-----TLDKDPCTIQEWNEGKI 109
             +    ++   IIV   F    DL +L   +K  P  R     +LD    TI+ + +G  
Sbjct: 933  NQIRTKSSEEKIIVFSQFTTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGST 992

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     +   GL L    N ++    +W+    +Q ++R       + G +R VFV+ 
Sbjct: 993  QVLLISLRAGNVGLTLTC-ANHVILMDPFWNPFVEEQAMDR-----AHRIGQQREVFVHR 1046

Query: 170  LIAQNTIDELVLQRLR-TKSTIQDLL 194
            ++  +TI+  +++  +  K  +Q+ L
Sbjct: 1047 ILLNDTIEGRIMELQKYKKEMVQNAL 1072


>gi|73998068|ref|XP_543938.2| PREDICTED: similar to helicase, lymphoid-specific isoform 1 [Canis
           familiaris]
          Length = 837

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 606 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 663

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 664 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 717

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 718 VYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|85014197|ref|XP_955594.1| DNA repair and recombination protein [Encephalitozoon cuniculi
           GB-M1]
 gi|19171288|emb|CAD27013.1| RAD26-LIKE DNA REPAIR AND RECOMBINATION PROTEIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 695

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------GRT-LDKDPCTI 101
              KIK L  +++  ++    ++V       L  +++   +       GRT     P  +
Sbjct: 466 SSCKIKILVDLLKKWRSEGNKVLVFSQTIRMLDIIERCVRKYTYLRMDGRTPTSSRPGLV 525

Query: 102 QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +NE   + L        G GLNL  G + +V +   W+     Q  ER       + G
Sbjct: 526 DRFNEDEDVFLFLLTTKVGGLGLNLT-GASRIVIYDPDWNPSTDTQAKERAW-----RYG 579

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K+ V +Y  + ++TI+E V Q+   K  +   +L+
Sbjct: 580 QKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKKVLS 615


>gi|331244727|ref|XP_003335003.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309313993|gb|EFP90584.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 964

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 81/204 (39%), Gaps = 27/204 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            QY   +R     L  +     +   KT++ +  +N  ++ D     KE+   K      
Sbjct: 696 AQYKSLRR---FQLSRDEF-FNSGKVKTLQLILASNNNLHADPSSSSKEIDKSK------ 745

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW--NEGKIP 110
           I+++ + +  ++   F   L  L+              G+T   +  ++ +   N+  I 
Sbjct: 746 IVKQDSPSRFLIFSQFTQMLDILKVVLKLLDVKFLVLTGQTNVTERQSLVDQFTNDPSIT 805

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL    + ++ F   ++        +R    R  + G  R V V+ L
Sbjct: 806 VFLLSTRAGGLGLNL-MAADTVILFDQDFNPH-----NDRQAEDRAYRLGQTRDVKVFKL 859

Query: 171 IAQNTIDELVLQRLRTKSTIQDLL 194
           I++ TI+E +LQ   TK  I + +
Sbjct: 860 ISKGTIEEDILQLASTKIEIDNSI 883


>gi|119570417|gb|EAW50032.1| helicase, lymphoid-specific, isoform CRA_g [Homo sapiens]
          Length = 873

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 708

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 709 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747


>gi|114631877|ref|XP_001151592.1| PREDICTED: helicase, lymphoid-specific isoform 15 [Pan troglodytes]
          Length = 877

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 708

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 709 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747


>gi|60688369|gb|AAH90481.1| Hells protein [Danio rerio]
          Length = 252

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L      + +   R        D+D    +  ++ ++ L     
Sbjct: 30  GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 89

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY LI  NTI
Sbjct: 90  RAGGLGINLT-SADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLITANTI 143

Query: 177 DELVLQRLRTKSTIQDLLL 195
           DE +L+R   K  ++ +++
Sbjct: 144 DEKILERASAKRKLEKMVI 162


>gi|297490772|ref|XP_002698437.1| PREDICTED: helicase, lymphoid specific-like [Bos taurus]
 gi|296472735|gb|DAA14850.1| helicase, lymphoid specific-like [Bos taurus]
          Length = 784

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  K     +++       L  L                  +  +    I  +N +
Sbjct: 553 MLPEL--KTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTD 610

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  R V 
Sbjct: 611 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTRPVV 664

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 665 VYRLVTANTIDQKIVERAAAKRKLEKLII 693


>gi|296082077|emb|CBI21082.3| unnamed protein product [Vitis vinifera]
          Length = 1356

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT 100
              K++ L+ ++ K       +++   F   L  L         Q     G+    +   
Sbjct: 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 665

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 666 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 719

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I
Sbjct: 720 RLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNI 765


>gi|114631901|ref|XP_507937.2| PREDICTED: helicase, lymphoid-specific isoform 16 [Pan troglodytes]
          Length = 700

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 457 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 516

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 517 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 570

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 571 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 609


>gi|162312253|ref|NP_596080.2| TATA-binding protein associated factor Mot1 [Schizosaccharomyces
            pombe 972h-]
 gi|81170682|sp|O43065|MOT1_SCHPO RecName: Full=Probable helicase mot1; AltName: Full=Modifier of
            transcription 1; AltName: Full=TBP-associated factor mot1
 gi|157310435|emb|CAA21270.2| TATA-binding protein associated factor Mot1 [Schizosaccharomyces
            pombe]
          Length = 1953

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 27/185 (14%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            A K     QL       +   +   +      A+           +++       L  ++
Sbjct: 1701 APKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSE-------HRVLIFCQLKDMLDMVE 1753

Query: 86   KAFPQG--------------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            K   Q                   +     +  N+  I +L       G GLNL  G + 
Sbjct: 1754 KDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLT-GADT 1812

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+     Q ++R       + G K+ V VY LI +  ++E ++   R K  + 
Sbjct: 1813 VIFVEHDWNPMRDLQAMDR-----AHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVA 1867

Query: 192  DLLLN 196
              ++N
Sbjct: 1868 STVVN 1872


>gi|256818868|ref|YP_003140147.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           ochracea DSM 7271]
 gi|256580451|gb|ACU91586.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           ochracea DSM 7271]
          Length = 950

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           E I  FN+ +  ++  +++      D E K     ++E I  +E +++ +     ++   
Sbjct: 751 EPITEFNTLNMLMRLRKISLHPKLVDKESKIASGKYEEVINYMEELLQSS--RKALIFSS 808

Query: 77  FNSDLAR---------LQKAFPQGRT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F S LA          ++ A   G T   ++        N   I   F    +   GLNL
Sbjct: 809 FVSHLALYEEWCNKKGIKYAKLTGETPSFERKNQVEMFQNNPSISFFFISLKAGEVGLNL 868

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++    WW+    +Q I R       +   +  V V   ++++TI+E +++  +
Sbjct: 869 TQ-ASYVLLLDPWWNPFSEKQAIGR-----AHRIEQQNKVNVIRFVSKDTIEEKIIKLQK 922

Query: 186 TKSTIQDLLLN 196
           +K+ + + +++
Sbjct: 923 SKTELSENIID 933


>gi|119570414|gb|EAW50029.1| helicase, lymphoid-specific, isoform CRA_d [Homo sapiens]
          Length = 700

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 457 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 516

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 517 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 570

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 571 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 609


>gi|114631875|ref|XP_001151210.1| PREDICTED: helicase, lymphoid-specific isoform 9 [Pan troglodytes]
          Length = 884

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 641 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 700

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 701 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 754

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 755 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 793


>gi|330469460|ref|YP_004407203.1| non-specific serine/threonine protein kinase [Verrucosispora maris
            AB-18-032]
 gi|328812431|gb|AEB46603.1| non-specific serine/threonine protein kinase [Verrucosispora maris
            AB-18-032]
          Length = 1040

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y     ++   ++                +  Q+ N       +         K+  L
Sbjct: 809  ALYQVVVDDMMARIEASEGIERRGLVLATMTRLKQVCNHPAQLLRDGSALAGRSGKLARL 868

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN 105
            E I+++  A     ++   + ++   + +     R                    +  + 
Sbjct: 869  EEILDEVLAAGEKALLFTQY-AEFGGMLRGHLSARFGREVLFLHGGLGKADRDEMVTRFQ 927

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P L      + G GL L    N +V    WW+     Q  +R       + G +R 
Sbjct: 928  SDDGPALFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQRRR 981

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   +   T++E V   +  K ++   ++
Sbjct: 982  VQVRKFVCAGTVEEKVAALIADKRSLAASVV 1012


>gi|119570422|gb|EAW50037.1| helicase, lymphoid-specific, isoform CRA_l [Homo sapiens]
          Length = 714

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 471 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 530

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 531 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 584

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 585 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 623


>gi|114631903|ref|XP_001150736.1| PREDICTED: helicase, lymphoid-specific isoform 2 [Pan troglodytes]
          Length = 714

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 471 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 530

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 531 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 584

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 585 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 623


>gi|169763362|ref|XP_001727581.1| SNF2 family helicase/ATPase PasG [Aspergillus oryzae RIB40]
 gi|83770609|dbj|BAE60742.1| unnamed protein product [Aspergillus oryzae]
          Length = 868

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K+  L+ ++ +  AN   I++   F S L  LQ               G     D 
Sbjct: 626 TASGKMLLLDRLVTRLLANGHKILIFSQFKSQLDILQDWATQLRSWNCCRIDGAISQTDR 685

Query: 99  CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N +    +      + G G+NL    + ++ F   W+ ++  Q        R 
Sbjct: 686 RDQIKAFNTDPDYKIFLLSTRAGGQGINL-MAADTVILFDSDWNPQQDLQA-----QDRA 739

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 740 HRIGQTRPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 782


>gi|42407269|dbj|BAD10851.1| lymphoid specific helicase variant8 [Homo sapiens]
 gi|119570412|gb|EAW50027.1| helicase, lymphoid-specific, isoform CRA_b [Homo sapiens]
          Length = 884

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 641 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 700

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 701 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 754

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 755 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 793


>gi|316969757|gb|EFV53807.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 527

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 68/176 (38%), Gaps = 19/176 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTL 94
           +  K        K+  L+ ++E   K     +++   F   +  L      + +      
Sbjct: 320 EANKQEVISSSGKMIVLDRLLEGLFKEGDHKVLIFTQFVEMIHILSFYCEYRNYKFCSLY 379

Query: 95  DK-----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            K         +  + +G+  +      +   GLNL    + ++ F   W+ +   Q  +
Sbjct: 380 GKMSFGERQDEVDRFTKGEASVFLISTRAGNLGLNL-MAADTVILFDSDWNPQCDLQASD 438

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R       + G  + V +Y L+A+ TIDE+++ R ++K  +++      + E + +
Sbjct: 439 RC-----HRIGQTKPVLIYRLVAKGTIDEIMVDRAQSKRKLENASEKLTEAELLEI 489


>gi|312381365|gb|EFR27128.1| hypothetical protein AND_06360 [Anopheles darlingi]
          Length = 2541

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-- 101
            K++ L+ +++K  +    +++       L  L+              G T  +    +  
Sbjct: 1607 KLQTLDRLLKKLKSGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVEQRQVLME 1666

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  N+ ++ +      S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1667 RFNNDRRMFVFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1720

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1721 TRDVHIYRLVSEKTIEENILKKANQKRILGDLAIEG 1756


>gi|315504405|ref|YP_004083292.1| snf2-related protein [Micromonospora sp. L5]
 gi|315411024|gb|ADU09141.1| SNF2-related protein [Micromonospora sp. L5]
          Length = 1136

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 69/211 (32%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y     ++   ++  +             +  Q+ N       +    +    K++ L
Sbjct: 905  ALYRAVVDDMMAKIESSDGIERRGLVLATMTRLKQVCNHPAQLLHDGSALDGRSGKLERL 964

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN 105
            + I+++  A     ++   + ++   + +     RT              +    +  + 
Sbjct: 965  DEIVDEVLAAEEKALLFTQY-AEFGGMLRGHLSARTGREVLLLHGGVGKAERDAMVTRFQ 1023

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  PL      + G GL L    N +V    WW+     Q  +R       + G +R 
Sbjct: 1024 TPQGPPLFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQRRR 1077

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   +   T++E V   +  K ++   ++
Sbjct: 1078 VQVRKFVCAGTVEEKVAAMIADKRSLARSVV 1108


>gi|302869123|ref|YP_003837760.1| SNF2-like protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571982|gb|ADL48184.1| SNF2-related protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1078

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 69/211 (32%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y     ++   ++  +             +  Q+ N       +    +    K++ L
Sbjct: 847  ALYRAVVDDMMAKIESSDGIERRGLVLATMTRLKQVCNHPAQLLHDGSALDGRSGKLERL 906

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN 105
            + I+++  A     ++   + ++   + +     RT              +    +  + 
Sbjct: 907  DEIVDEVLAAEEKALLFTQY-AEFGGMLRGHLSARTGREVLLLHGGVGKAERDAMVTRFQ 965

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  PL      + G GL L    N +V    WW+     Q  +R       + G +R 
Sbjct: 966  TPQGPPLFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQRRR 1019

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   +   T++E V   +  K ++   ++
Sbjct: 1020 VQVRKFVCAGTVEEKVAAMIADKRSLARSVV 1050


>gi|114631899|ref|XP_001151339.1| PREDICTED: helicase, lymphoid-specific isoform 11 [Pan troglodytes]
          Length = 824

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 542 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 601

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 602 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 655

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 656 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 694


>gi|45382655|ref|NP_990041.1| DNA repair and recombination protein RAD54B [Gallus gallus]
 gi|51316526|sp|Q9DG67|RA54B_CHICK RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|9957289|gb|AAG09308.1|AF178529_1 Rad54b [Gallus gallus]
          Length = 918

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 71/177 (40%), Gaps = 23/177 (12%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
              + E+   K++ L  ++    E +++  +++  ++   L  L +              
Sbjct: 640 SDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDG 699

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              + +    +  +N    P  +      + G GLNL  G + L+ + + W+     Q +
Sbjct: 700 NTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNL-VGASHLILYDIDWNPATDIQAM 758

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK-KETIH 204
            R+      + G K  V +Y L+   TI+E + QR  +K  +   +++  K  E IH
Sbjct: 759 ARVW-----RDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIH 810


>gi|320032039|gb|EFW13995.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 1692

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1354 PDKRLLQYDCGKLQQLDKLLRQLQAGGHRALIFTQMTKMLDILEQFLNVHGHRYLRLDGA 1413

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1414 TKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1472

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1473 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1513


>gi|260834097|ref|XP_002612048.1| hypothetical protein BRAFLDRAFT_127252 [Branchiostoma floridae]
 gi|229297421|gb|EEN68057.1| hypothetical protein BRAFLDRAFT_127252 [Branchiostoma floridae]
          Length = 3715

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 78/210 (37%), Gaps = 47/210 (22%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++ YH+ +R +                   + +Q   G                K++ L+
Sbjct: 2351 LRCYHRVERGMLTQFPDP------------RLVQYDCG----------------KLQRLD 2382

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EG 107
             ++ +       +++       L  L++                 +++    ++ +N + 
Sbjct: 2383 KLLRQLKQGQHRVLIFTQMTRMLDVLERFLNYHGHVYLRLDGTTRIEQRQALMERFNADY 2442

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I +      S G G+NL  G + ++F+   W+     Q  +R       + G  R V +
Sbjct: 2443 RIFVFILSTRSGGIGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQTRDVNI 2496

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+++ T++E +L++   K  + D+ +  
Sbjct: 2497 YRLVSERTVEENILKKANQKRLLVDVSIEG 2526


>gi|154271652|ref|XP_001536679.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
 gi|150409349|gb|EDN04799.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
          Length = 889

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 26/200 (13%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVIIEK--ANAAPI 71
           IE   +A    +    +    Y+        + D       K+  L+ +I    +    I
Sbjct: 602 IEKAKTAQLATRLACNSPHNFYWPWGDDPSHIDDTLITSSGKMLLLDRLIPCLMSKGHKI 661

Query: 72  IVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           ++   F + L  LQ                  +       IQ +N +    + F    + 
Sbjct: 662 LIFSQFKTQLDLLQDYATSLRGWNCCRIDGAVSQVDRQAQIQAFNTDPDYRIFFLSTRAG 721

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  + T+++ 
Sbjct: 722 GQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATRGTVEQT 775

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           +L++  +K  ++ L++   K
Sbjct: 776 LLEKADSKRRLEKLVIQKGK 795


>gi|242061806|ref|XP_002452192.1| hypothetical protein SORBIDRAFT_04g021470 [Sorghum bicolor]
 gi|241932023|gb|EES05168.1| hypothetical protein SORBIDRAFT_04g021470 [Sorghum bicolor]
          Length = 1024

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
            D EK+W E    KI AL   +E  +++ A  IV   + + L  LQ       F   R  
Sbjct: 848 IDVEKNWVE--SSKISALLQELEVLRSSGAKSIVFSQWTAFLDLLQIPLSRNNFSFARLD 905

Query: 94  ----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L +    I+E++E K I +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 906 GTLNLQQREKVIKEFSEDKGILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAV 964

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  + V +   I + T++E +      K 
Sbjct: 965 MRI-----HRIGQTKTVSIRRFIVKGTVEERMEAVQARKQ 999


>gi|322499392|emb|CBZ34465.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1126

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEG 107
            L+ +        +++  +F   L  +                   + K    +  +N  
Sbjct: 799 VLDELKRNGERDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVP 858

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 859 GSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 912

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  TI+E + QR  +K  +   +++
Sbjct: 913 FIYRLLSTGTIEEKIYQRQVSKQGLSANVVD 943


>gi|146087788|ref|XP_001465905.1| DNA repair and recombination protein RAD54 [Leishmania infantum
           JPCM5]
 gi|134070006|emb|CAM68336.1| putative DNA repair and recombination protein RAD54 [Leishmania
           infantum JPCM5]
          Length = 1126

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEG 107
            L+ +        +++  +F   L  +                   + K    +  +N  
Sbjct: 799 VLDELKRNGERDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVP 858

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 859 GSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 912

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  TI+E + QR  +K  +   +++
Sbjct: 913 FIYRLLSTGTIEEKIYQRQVSKQGLSANVVD 943


>gi|74008347|ref|XP_865278.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 2 [Canis familiaris]
          Length = 1070

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|262203175|ref|YP_003274383.1| SNF2-like protein [Gordonia bronchialis DSM 43247]
 gi|262086522|gb|ACY22490.1| SNF2-related protein [Gordonia bronchialis DSM 43247]
          Length = 988

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAF---NSASKTVKCLQLAN--------GAVYYDEEKHWKEV 51
            Y     EL   L+ +   A    N  +   +  Q+ N        G       +H    
Sbjct: 753 LYRAVIDELMEALRDKQQRALRRRNVLAALTRLKQICNHPAHYLADGTAMAPRGRHRSGK 812

Query: 52  HDEKIKALEVIIEKANAAPIIVAY---------HFNSDL-ARLQKAFPQGRTLDKDPCTI 101
            +     L  +I++ + A +   +              L   +          ++D    
Sbjct: 813 VELLADTLTTLIDEGDRALVFTQFAAFGEMLSGWLTDTLGTEIPLLHGGLGRSERDRMVA 872

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +   P++ A   + G GLNL    N +V    WW+     Q  +R       + G 
Sbjct: 873 GFQGDDGPPVMLATLKAGGTGLNLT-AANHVVHVDRWWNPAVEDQATDR-----AYRIGQ 926

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V V+  I   TI+E +   +  K  +  L + A
Sbjct: 927 DQRVDVHRFICVGTIEERIDDMITRKRELSQLTVAA 962


>gi|296220830|ref|XP_002756503.1| PREDICTED: lymphoid-specific helicase isoform 5 [Callithrix
           jacchus]
          Length = 739

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 496 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 555

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 556 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 609

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 610 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 648


>gi|292495070|sp|P38086|RDH54_YEAST RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|433837|emb|CAA53930.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|536326|emb|CAA85017.1| RDH54 [Saccharomyces cerevisiae]
          Length = 958

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR-----------T 93
            + ++  K+K L  ++E   K     ++V  ++   L  ++                   
Sbjct: 658 SRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPA 717

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           I        S G GLNL  G + L+ F   W+     Q + RI  
Sbjct: 718 KQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNL-VGRSRLILFDNDWNPSVDLQAMSRI-- 774

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G K+  F+Y L+    IDE +LQR   K+++    L
Sbjct: 775 ---HRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFL 813


>gi|114631881|ref|XP_001151143.1| PREDICTED: helicase, lymphoid-specific isoform 8 [Pan troglodytes]
          Length = 806

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 563 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 622

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 623 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 676

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 677 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 715


>gi|226312228|ref|YP_002772122.1| hypothetical protein BBR47_26410 [Brevibacillus brevis NBRC 100599]
 gi|226095176|dbj|BAH43618.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 952

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 29/217 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTV--KCLQLANGA--VYYDEEKHWKEVHDEKIK 57
             Y    ++++  ++  +         T   +  QL +    +  +     +     K++
Sbjct: 712 ALYETAIQDMFDRMEKASPMERRGLILTTLTRLKQLCDHPALILNEIATTDEAGRSHKLE 771

Query: 58  ALEVIIEKANAAPI--IVAYHFNSDLARLQK----------AFPQGRTLD-KDPCTIQEW 104
            L  +++         ++   +      LQ+           F  G T   K    I  +
Sbjct: 772 RLLELVDDIRQKKERCLIFTQYIQMGNMLQRVLTREGYGPVYFLNGATKKEKRDEMIARF 831

Query: 105 NEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +P      +      + G GLNL    N ++    WW+     Q  +R       +
Sbjct: 832 QDPTLPDDERGAIFILSLRAGGTGLNLTE-ANHVIHVDRWWNPAVENQATDR-----AHR 885

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G +R V VY  I+  TI+E + + +  K ++   ++
Sbjct: 886 IGQQRDVHVYKFISLGTIEERIDEMMERKLSLSQQIV 922


>gi|42407259|dbj|BAD10846.1| lymphoid specific helicase variant3 [Homo sapiens]
 gi|119570413|gb|EAW50028.1| helicase, lymphoid-specific, isoform CRA_c [Homo sapiens]
          Length = 806

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 563 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 622

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 623 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 676

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 677 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 715


>gi|170117369|ref|XP_001889872.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164635212|gb|EDQ99523.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 672

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 21/207 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+    +R    DL  E++     A   + C    +   Y  +E  +  +   K++ L 
Sbjct: 429 LKEPDFKKRGALFDLVKEDMSVMTDAELQIFCASYKSTRKYLQDENCY--LDAGKVQTLL 486

Query: 61  VIIE--KANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGK 108
            ++         +++   F   L          +++     G T +D     + E+ E +
Sbjct: 487 KLLSTYDREGRKVLIFSQFTQILDILQAVLNNNKIKYLILTGSTPVDVRQTLVDEFTEDE 546

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            IP+      + G G+NL    +++V F   ++        +R    R  + G KR V V
Sbjct: 547 TIPVFLLSTKAGGMGINLT-AASVVVMFDQDFNPH-----NDRQAQDRAYRIGQKRDVDV 600

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             LI++ TI+E +L+  +TK  + + +
Sbjct: 601 VKLISRGTIEEDMLKLGQTKLALDEAV 627


>gi|331227507|ref|XP_003326422.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309305412|gb|EFP82003.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 939

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 21/176 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
           D     +     K+  LE     I+      I++  +F   L  ++K   + R       
Sbjct: 686 DPRAPARPELSGKMTVLERFLHKIKTETTDKIVLISNFTQTLDVMEKMCRERRWGNLRLD 745

Query: 93  ---TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               + K    +  +N  EGK  +      + G G+NL  G N L+ F   W+    QQ 
Sbjct: 746 GTMQITKRQKLVDRFNDPEGKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPASDQQA 804

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + R+      + G K+  FVY  I   +++E V QR   K  +   +++  + E  
Sbjct: 805 LARVW-----RDGQKKNCFVYRFILTGSVEEKVFQRQSQKMKLSASVVDEQEDEAR 855


>gi|320581787|gb|EFW96006.1| Putative DNA helicase INO80 [Pichia angusta DL-1]
          Length = 1280

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +   K+  L+ ++     N    ++ +     +  +++                 L   
Sbjct: 1091 VIESGKLAKLDEMLVDLKKNGHKCLIYFQMTKMMDLMEEFLTYRQYKYIRLDGSSKLSDR 1150

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + +W  + ++ +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1151 RDLVHDWQTKPELFIFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1204

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1205 HRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEHVQQVVMEG 1245


>gi|58267652|ref|XP_570982.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227216|gb|AAW43675.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1848

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 60/246 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGA--VYYDEEKHWKE 50
            + Y +F R    +  G  IE   SASK              +L N    V   E + +KE
Sbjct: 1543 QLYEEFSRSKAAEEAGMEIE--TSASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKE 1600

Query: 51   VHDE--------------KIKALEVII-------------EKANAAPIIVAYHFNSDLAR 83
            +  +              K++AL+ ++             +      +++       L  
Sbjct: 1601 IQKKIGGGPELHDLSHAPKMEALKQLLQDCGIGLPVDKLADDVTTHRVLIFCQLRPMLDI 1660

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            ++K                      K    +Q +N + +I +L    +  G GLNL  G 
Sbjct: 1661 IEKDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GA 1719

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G ++ V VY LI + T++E ++   R K  
Sbjct: 1720 DTVIFVDHDWNPMKDLQAMDR-----AHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLN 1774

Query: 190  IQDLLL 195
            I   ++
Sbjct: 1775 IASSVV 1780


>gi|303315865|ref|XP_003067937.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107613|gb|EER25792.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1684

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1346 PDKRLLQYDCGKLQQLDKLLRQLQAGGHRALIFTQMTKMLDILEQFLNVHGHRYLRLDGA 1405

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1406 TKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1464

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1465 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1505


>gi|327350928|gb|EGE79785.1| lymphocyte-specific helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 893

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 42  YDEEKHWKE---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
            D+  H  E       K+  L+ +I    +    I++   F + L  LQ           
Sbjct: 631 DDDPSHIDESLITSSGKMLLLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNC 690

Query: 87  -AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +       IQ +N      +      + G G+NL    + ++ F   W+ ++ 
Sbjct: 691 CRIDGAVSQVDRQAQIQAFNTNQDYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQD 749

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Q        R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 750 LQA-----QDRAHRIGQTKPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGK 799


>gi|145339485|ref|NP_190996.2| RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA binding / binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
          Length = 2038

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 36/195 (18%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---------ANA------APIIVAYH 76
               + NG      E H  + H  K+ AL+ I+E+         ++         +++   
Sbjct: 1773 LAAMINGCSDIITELHKVQ-HSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQ 1831

Query: 77   FNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + L  ++K                     +K    ++ +N +  I +L       G G
Sbjct: 1832 HKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLG 1891

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + LVF    W+     Q ++R       + G KR V V+ LI + T++E V+ 
Sbjct: 1892 LNLT-SADTLVFMEHDWNPMRDHQAMDR-----AHRLGQKRVVNVHRLIMRGTLEEKVMS 1945

Query: 183  RLRTKSTIQDLLLNA 197
              + K ++ + ++NA
Sbjct: 1946 LQKFKVSVANTVINA 1960


>gi|119177637|ref|XP_001240571.1| hypothetical protein CIMG_07734 [Coccidioides immitis RS]
          Length = 1665

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1327 PDKRLLQYDCGKLQQLDKLLRQLQAGGHRALIFTQMTKMLDILEQFLNVHGHRYLRLDGA 1386

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1387 TKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1445

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1446 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1486


>gi|50414862|gb|AAH77794.1| HELLS protein [Xenopus laevis]
          Length = 756

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K   L+ ++ +       +++       L  L                  +      
Sbjct: 600 SSGKFLLLDRLLPEMKKRGHKVLIFSQMTMMLDILMDYCYYKKFNFCRLDGSMSYTDREE 659

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +N +  + +      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 660 NMRSFNTDPDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQADLQAQDRC-----HR 713

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  R V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 714 IGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKLVI 750


>gi|49257014|dbj|BAD24805.1| lymphoid specific helicase variant10 [Homo sapiens]
          Length = 782

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 708

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 709 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747


>gi|260809115|ref|XP_002599352.1| hypothetical protein BRAFLDRAFT_64295 [Branchiostoma floridae]
 gi|229284629|gb|EEN55364.1| hypothetical protein BRAFLDRAFT_64295 [Branchiostoma floridae]
          Length = 996

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 30/173 (17%)

Query: 26  ASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
           ++K     QL    G    D  +    + D  +               +V     S L  
Sbjct: 777 SAKLTALRQLLLDCGIGVPDSGQTSDLLSDAVV----------GQHRALVFCQLKSMLDI 826

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           L+K   +              N+  I LL       G GLNL  G + ++F    W+   
Sbjct: 827 LEKDLLK------------FNNDPSIDLLLLTTHVGGLGLNLT-GADTVIFVEHDWNPMR 873

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q ++R       + G K+ V VY L+ Q T++E ++   + K  I + +++
Sbjct: 874 DLQAMDR-----AHRLGQKKVVNVYRLVTQGTLEEKIMGLQKFKLNIANTVIS 921


>gi|9956001|gb|AAG01987.1| similar to Mus musculus lymphocyte specific helicase mRNA with
           GenBank Accession Number U25691.1 [Homo sapiens]
 gi|21410637|gb|AAH31004.1| HELLS protein [Homo sapiens]
 gi|21411296|gb|AAH30963.1| HELLS protein [Homo sapiens]
          Length = 348

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 105 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 164

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 165 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 218

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 219 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 257


>gi|134112447|ref|XP_775199.1| hypothetical protein CNBE4720 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257851|gb|EAL20552.1| hypothetical protein CNBE4720 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1848

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 60/246 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGA--VYYDEEKHWKE 50
            + Y +F R    +  G  IE   SASK              +L N    V   E + +KE
Sbjct: 1543 QLYEEFSRSKAAEEAGMEIE--TSASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKE 1600

Query: 51   VHDE--------------KIKALEVII-------------EKANAAPIIVAYHFNSDLAR 83
            +  +              K++AL+ ++             +      +++       L  
Sbjct: 1601 IQKKIGGGPELHDLSHAPKMEALKQLLQDCGIGLPVDKLADDVTTHRVLIFCQLRPMLDI 1660

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            ++K                      K    +Q +N + +I +L    +  G GLNL  G 
Sbjct: 1661 IEKDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GA 1719

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G ++ V VY LI + T++E ++   R K  
Sbjct: 1720 DTVIFVDHDWNPMKDLQAMDR-----AHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLN 1774

Query: 190  IQDLLL 195
            I   ++
Sbjct: 1775 IASSVV 1780


>gi|297687067|ref|XP_002821047.1| PREDICTED: LOW QUALITY PROTEIN: lymphoid-specific helicase-like
           [Pongo abelii]
          Length = 890

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 647 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 706

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 707 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 760

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 761 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 799


>gi|196010760|ref|XP_002115244.1| hypothetical protein TRIADDRAFT_59226 [Trichoplax adhaerens]
 gi|190582015|gb|EDV22089.1| hypothetical protein TRIADDRAFT_59226 [Trichoplax adhaerens]
          Length = 2314

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             ++   +    K++AL++++    A    +++       L  L+K               
Sbjct: 1326 PDRRLIQYDCGKLQALDILLHDLKAKGHRVLIFTQMTKMLDILEKFLNFHGHVYLRLDGA 1385

Query: 92   RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++     + +N  K +        S G G+NL  G + +VF+   W+     Q  +R
Sbjct: 1386 TPVERRQMLTERFNNDKRVFCFVLSTRSGGLGVNLT-GADTVVFYDSDWNPTMDAQAQDR 1444

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  R V +Y LI++ TI+E +L++   K  +
Sbjct: 1445 C-----HRIGQTRDVHIYRLISEFTIEENILKKANQKRLL 1479


>gi|197691963|dbj|BAG70033.1| homolog of human BTAF1 [Arabidopsis thaliana]
          Length = 2045

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 36/195 (18%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---------ANA------APIIVAYH 76
               + NG      E H  + H  K+ AL+ I+E+         ++         +++   
Sbjct: 1780 LAAMINGCSDIITELHKVQ-HSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQ 1838

Query: 77   FNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + L  ++K                     +K    ++ +N +  I +L       G G
Sbjct: 1839 HKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLG 1898

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + LVF    W+     Q ++R       + G KR V V+ LI + T++E V+ 
Sbjct: 1899 LNLT-SADTLVFMEHDWNPMRDHQAMDR-----AHRLGQKRVVNVHRLIMRGTLEEKVMS 1952

Query: 183  RLRTKSTIQDLLLNA 197
              + K ++ + ++NA
Sbjct: 1953 LQKFKVSVANTVINA 1967


>gi|114631879|ref|XP_001151268.1| PREDICTED: helicase, lymphoid-specific isoform 10 [Pan troglodytes]
          Length = 838

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 708

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 709 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747


>gi|21914927|ref|NP_060533.2| lymphoid-specific helicase [Homo sapiens]
 gi|74761670|sp|Q9NRZ9|HELLS_HUMAN RecName: Full=Lymphoid-specific helicase; AltName:
           Full=Proliferation-associated SNF2-like protein;
           AltName: Full=SWI/SNF2-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 6
 gi|8980660|gb|AAF82262.1| proliferation-associated SNF2-like protein [Homo sapiens]
 gi|17384047|emb|CAD13191.1| helicase, lymphoid-specific [Homo sapiens]
 gi|119570420|gb|EAW50035.1| helicase, lymphoid-specific, isoform CRA_j [Homo sapiens]
 gi|148922411|gb|AAI46309.1| Helicase, lymphoid-specific [synthetic construct]
 gi|189069422|dbj|BAG37088.1| unnamed protein product [Homo sapiens]
 gi|261857602|dbj|BAI45323.1| helicase, lymphoid-specific [synthetic construct]
          Length = 838

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 708

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 709 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747


>gi|298711307|emb|CBJ26552.1| DNA repair and recombination protein RAD54 homolog [Ectocarpus
           siliculosus]
          Length = 1510

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 21/157 (13%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPC 99
             K++ L  ++ +        I+V  +F S L  +     + ++P  R      + K   
Sbjct: 563 SGKMETLFRLMREMRNTGDDRIVVVSNFTSSLDLIGSMCRENSWPFVRLDGSTGVSKRQK 622

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +NE   +         + G GLNL  GGN LV F   W+    +Q   R+      
Sbjct: 623 MVNAFNEPGPQSFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPAVDKQAAARVW----- 676

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G K+  FVY  ++  TI+E V QR  +K  +Q+++
Sbjct: 677 RDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIV 713


>gi|168066598|ref|XP_001785222.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162663184|gb|EDQ49963.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1727

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K++ L V++ +  +     ++       L  L+              G 
Sbjct: 1017 PDRRLLQFDCGKLQELAVLLRRLKSQGHRALIFTQMTKMLDVLESFINLYGYTYMRLDGS 1076

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + Q +N   KI L      S G G+NL  G + ++F+   W+     Q  +R
Sbjct: 1077 TKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDLQAQDR 1135

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1136 C-----HRIGQTREVHIYRLISESTIEENILKKANQKRILDDLVIQS 1177


>gi|109090016|ref|XP_001095267.1| PREDICTED: lymphoid-specific helicase isoform 9 [Macaca mulatta]
          Length = 707

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 464 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 523

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 524 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 577

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 578 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 616


>gi|317968221|ref|ZP_07969611.1| SNF2 family DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 1039

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 26   ASKTVKCLQLANG---AVYYDEEKHWKEVH------DEKIKALEVIIEK--ANAAPIIVA 74
             +   K  Q+ N    A+  D                 K++ LE I+E+        ++ 
Sbjct: 828  LALLTKLKQICNHPALALKQDPADADASFFKEFAARSAKVQRLEEILEEVMEAGDRALLF 887

Query: 75   YHFNSDLARLQKA----------FPQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGH 121
              F      L+            F  G T   +    +  + +      L      + G 
Sbjct: 888  TQFAEWGHLLKAHLEHKWRQEVPFLYGSTSKTERQAMVDRFQDDPRGPQLFLLSLKAGGV 947

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    + +     WW+     Q  +R       + G +  V V+  I   +++E + 
Sbjct: 948  GLNLTRASH-VFHIDRWWNPAVENQATDR-----AYRIGQQNRVMVHKFITSGSVEERID 1001

Query: 182  QRLRTKSTIQDLLL 195
            + ++ KS + + ++
Sbjct: 1002 RMIKEKSKLAEDIV 1015


>gi|254573876|ref|XP_002494047.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|238033846|emb|CAY71868.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
          Length = 728

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDK--DPCTIQ 102
             K + L  I+++  A   I+   F   LA L+        K      T+ +     T++
Sbjct: 550 SAKSERLLEILKRDPARKTIIFSQFTKLLATLKPFLTKNGFKCVLYEGTMTRAMRDTTLK 609

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+NE  +  +L         GLNL    N +V +  WW+ +   Q I+R+      + G 
Sbjct: 610 EFNENPETTVLLCSLKCGAIGLNLTI-ANRVVIYDPWWNPQVEDQAIDRV-----YRFGQ 663

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V VY LI +++++E +++    K  + + +++
Sbjct: 664 TKEVDVYRLIIKDSVEENIVRLQEKKRQVAEAVVD 698


>gi|118089929|ref|XP_001234486.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5 [Gallus
           gallus]
          Length = 1198

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 555 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 614

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 615 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 674

Query: 90  QGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 675 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 733

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 734 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 778


>gi|301604374|ref|XP_002931866.1| PREDICTED: probable global transcription activator SNF2L1 [Xenopus
           (Silurana) tropicalis]
          Length = 1029

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QRE Y  +  ++I+  NSA K  K       +QL    N    +D             
Sbjct: 393 KMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTH 452

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DK 96
              +  K+  L+ ++ K     + +++       L  L+              G+T  ++
Sbjct: 453 LVYNSGKMVVLDKLLPKFKEQGSRVLIFSQMTRVLDILEDYCMWRGYEYCRLDGQTPHEQ 512

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I+ +N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 513 REAAIETFNSPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAMDR---- 567

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 568 -AHRIGQKKTVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 608


>gi|114631895|ref|XP_001151399.1| PREDICTED: helicase, lymphoid-specific isoform 12 [Pan troglodytes]
          Length = 861

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 579 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 638

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 639 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 692

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 693 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 731


>gi|325116690|emb|CBZ52243.1| hypothetical protein NCLIV_020290 [Neospora caninum Liverpool]
          Length = 677

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 20/153 (13%)

Query: 54  EKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-T 100
            K++ LE +   I  ++   +++  +F S L  ++              G T  +D    
Sbjct: 521 SKMQFLENLLLSIRSSSDDKVVIVSNFTSTLDNIEIFMRAKGYSFLRLDGSTAVRDRTGL 580

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++ +NE +          + G GLNL  G N L+     W+    QQ + RI      + 
Sbjct: 581 VKTFNESEQCFAFLLSSKAGGVGLNL-IGANRLILLDPDWNPANDQQALARIW-----RP 634

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G    VF+Y L+   TI+E +LQR   K+T+  
Sbjct: 635 GQVNPVFIYRLVGARTIEEKILQRQAYKTTLAQ 667


>gi|162312350|ref|XP_001713034.1| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|548669|sp|P36607|RAD5_SCHPO RecName: Full=DNA repair protein rad5
 gi|443973|emb|CAA52686.1| rad8 [Schizosaccharomyces pombe]
 gi|159883887|emb|CAA89964.2| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe]
          Length = 1133

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%)

Query: 46   KHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            K+W  +   K+      L  +   +    +++   F + L  +             F   
Sbjct: 955  KYWNRLQSVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGT 1014

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +       ++ + N+  + +L     + G GLNL    ++ +    WW      Q I+R
Sbjct: 1015 MSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIM-DPWWSWSVEAQAIDR 1073

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            I      + G ++ VFV   I ++T++E +L+    K+
Sbjct: 1074 I-----HRLGQEKPVFVTRYIVRDTVEERMLKIQERKN 1106


>gi|296814674|ref|XP_002847674.1| RING-13 protein [Arthroderma otae CBS 113480]
 gi|238840699|gb|EEQ30361.1| RING-13 protein [Arthroderma otae CBS 113480]
          Length = 1176

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I+E  +       I+   F S L  ++          + +   
Sbjct: 991  DKRWE--PSAKVDKTIEILESLHNSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1048

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1049 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNAGLNL-VAASQVIILDPFWNPYIEDQAIDR 1107

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  + +  L+
Sbjct: 1108 -----AHRIGQMRPVMVHRLLVENTVEDRIIALQDKKRELIEGALD 1148


>gi|322492369|emb|CBZ27643.1| putative DNA repair protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1092

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 49   KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDK 96
            K +H  K+ A+   IEK      ++V   F   L  L + + Q R           TL +
Sbjct: 919  KPLHGTKLDAIANYIEKVPKDEKVVVFSQFGGMLD-LTQYWLQRRSIRAVKLCGSLTLTQ 977

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +Q + +E  + ++     + G GLNLQ   N +V    WW+     Q ++R     
Sbjct: 978  RQSVLQAFLHEQSVRVILISLKAGGEGLNLQV-ANHVVLTDPWWNPAVEMQAVQR----- 1031

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1032 AHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|326430759|gb|EGD76329.1| hypothetical protein PTSG_01031 [Salpingoeca sp. ATCC 50818]
          Length = 752

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPCTIQE 103
             +  L   I+      I++  ++   L        L+           T+ +    +  
Sbjct: 481 AVLDCLLATIKMQTTDKIVLVSNYTQTLELFTTLCALRGYQYVRLDGSMTIKRRQKIVDR 540

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G GLNL  G N LV F   W+    +Q + R+      + G 
Sbjct: 541 FNDPTSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQ 594

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +  FVY  +   TI+E +LQR   K  +   +++
Sbjct: 595 TKLCFVYRFVTTGTIEEKILQRQAHKKALSQCVVD 629


>gi|322790286|gb|EFZ15285.1| hypothetical protein SINV_14493 [Solenopsis invicta]
          Length = 647

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K+  L+ ++ K       +++       L  ++                  ++    
Sbjct: 442 SSGKLLVLDAMLAKLKVQGHKVLLFSTMTMILDLIEDYLTLRDYNYVRLDGSTAIETRKK 501

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N      L      S G GLNL    + ++ +   W+ +   Q + R       +
Sbjct: 502 NINKFNNDPDTFLFLISTRSGGVGLNL-MSADTVIIYDSDWNPQADIQAMARC-----HR 555

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY L  + TIDE +++R   K  ++ ++++
Sbjct: 556 IGQTKPVVVYRLCTRGTIDEAIIKRAEGKRILEKMVIS 593


>gi|301766462|ref|XP_002918636.1| PREDICTED: probable global transcription activator SNF2L1-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 1054

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|254565235|ref|XP_002489728.1| ATPase that forms a large complex, containing actin and several
            actin-related proteins [Pichia pastoris GS115]
 gi|238029524|emb|CAY67447.1| ATPase that forms a large complex, containing actin and several
            actin-related proteins [Pichia pastoris GS115]
 gi|328350146|emb|CCA36546.1| DNA helicase INO80 [Pichia pastoris CBS 7435]
          Length = 1236

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +   K+  L+ ++ +       ++V +     +  +++                 L   
Sbjct: 1040 VIESGKLAKLDKMLVRLKKEGHKVLVYFQMTKMMDLMEEFLTYRQYKYIRLDGSSKLSDR 1099

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + +W  + ++ +      + G G+NL    + ++F+   W+     Q ++R      
Sbjct: 1100 RDLVHDWQTKPELFVFLLSTRAGGLGINLT-AADTVIFYDSDWNPTIDSQAMDR-----A 1153

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1154 HRLGQTRQVTVYRLLVRGTIEEKMRNRAKQKEHVQQVVMEG 1194


>gi|301761430|ref|XP_002916137.1| PREDICTED: lymphoid-specific helicase-like [Ailuropoda melanoleuca]
          Length = 837

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 606 MLPEL--KARGHKVLLFSQMTRMLDILLDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 663

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 664 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 717

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 718 VYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|310796552|gb|EFQ32013.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 878

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                    K+  L+ ++    A    +++   F + L  LQ                 +
Sbjct: 632 DESIVTSSGKMLMLDRLLPTLFAKGHKVLIFSQFKTQLDILQDYCELRKWNACRLDGSVS 691

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     I+E+NE     +      + G G+NL    + ++ F   W+ ++  Q  +R  
Sbjct: 692 QESRRDQIKEFNENPDFKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQDLQAQDRC- 749

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  R V VY L  + T++E +L     K  ++ L++
Sbjct: 750 ----HRIGQTRPVIVYRLATKGTVEEELLLSADAKRRLEKLII 788


>gi|302813632|ref|XP_002988501.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
 gi|300143608|gb|EFJ10297.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
          Length = 950

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI AL  ++EK  A       +V   F++ L  ++    +               K 
Sbjct: 774 PSAKINALVSMLEKTRAKDPNIKSVVFSQFSTMLKLIEGPLQKAGFKFVKLEGGMSASKR 833

Query: 98  PCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +     G   +      + G GLNL    N+ +    WW+    +Q ++R+   
Sbjct: 834 EENMEAFKSTRSGSPTVFLLSLKAAGVGLNLVTASNVFMM-DPWWNPAVEEQAMDRV--- 889

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + G  R V V+ LIA ++I+E +LQ    K  
Sbjct: 890 --HRLGQTRDVHVFRLIATDSIEERLLQVQEKKRA 922


>gi|296220826|ref|XP_002756501.1| PREDICTED: lymphoid-specific helicase isoform 3 [Callithrix
           jacchus]
          Length = 805

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 562 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 621

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 622 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 675

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 676 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 714


>gi|51893808|ref|YP_076499.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857497|dbj|BAD41655.1| Snf2 family helicase-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 499

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 26/184 (14%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF-NSDL 81
           + +   +  QL N                 K+  LE  +    A     ++   +    L
Sbjct: 300 ALTLLNQLKQLCN--------LDPATGASCKLAFLEQELAPLVARGEKAVIFSQYPKVTL 351

Query: 82  A-RLQKAFPQGRTLD-------KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNIL 132
              L +  P G  L        K    +  +  G +P +L     + G G+ L    N +
Sbjct: 352 EPLLPRLEPFGAVLFDGSLSDWKRQLIVHHFQHGDMPRVLAMSLKAGGVGITLTR-ANHV 410

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                WW+    QQ  +R       + G +R VFV  L+ + T++E + + +  K  +  
Sbjct: 411 YHLDHWWNPAVAQQAEDR-----THRIGQRRPVFVTTLLTRGTVEERIAELVERKRELFH 465

Query: 193 LLLN 196
            +++
Sbjct: 466 EVMD 469


>gi|300121515|emb|CBK22034.2| unnamed protein product [Blastocystis hominis]
          Length = 508

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 28/185 (15%)

Query: 32  CLQLANGA--VYYDEEKHWKEVHDE-------KIKALEVIIEKA--NAAPIIVAYHFNSD 80
             QL +    VY ++      + DE       K+  L+ +++        ++V   F   
Sbjct: 315 LRQLVSHPYNVYEEKSSSGSYITDESIIQKSSKLTLLDNLLKVLIPKGHRVLVFVQFVET 374

Query: 81  LARLQ---------KAFPQGRTLDKDP-CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGG 129
           L  L+              G TL  D    I+++     IP+      S G G+NL    
Sbjct: 375 LHLLEDYCTFRGYENCSIHGSTLQSDRDQEIKDFQSREDIPIFLLTTRSGGLGINL-SAA 433

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ +   W+ ++  Q ++R       + G KR V VY  +   T+D  +L+    K  
Sbjct: 434 DTVILYDSDWNPQQDIQAMDR-----AHRLGQKRDVVVYRFVTLGTMDVQLLKIAEEKRK 488

Query: 190 IQDLL 194
           ++ ++
Sbjct: 489 LERIV 493


>gi|170085783|ref|XP_001874115.1| RAD5-like protein [Laccaria bicolor S238N-H82]
 gi|164651667|gb|EDR15907.1| RAD5-like protein [Laccaria bicolor S238N-H82]
          Length = 1156

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 52   HDEKIKAL-EVIIEKANAAP---IIVAYHFNSDLARLQ-----KAFPQGRT-----LDKD 97
               K+ AL + + +  +  P    +V   F S L  +Q     + F Q R      + K 
Sbjct: 983  SSTKLNALIKSLCKLRDQDPCFRAVVFSQFTSFLDLIQVALERERFDQYRFDGTMDVKKK 1042

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I E+     K  +L     + G GLNL    N +     WW+     Q I+R+    
Sbjct: 1043 SAAINEFKSFSRKGKVLVVSLKAGGVGLNLT-AANHVFMMDCWWNAATENQAIDRV---- 1097

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G ++ V+V + I  NTI+  +LQ  + K+ I +      K + 
Sbjct: 1098 -HRIGQEKTVYVTHFIVANTIESRILQIQKRKTAIVNEAFRGSKSDP 1143


>gi|326924536|ref|XP_003208483.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Meleagris gallopavo]
          Length = 1043

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 398 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 457

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 458 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 517

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 518 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 576

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 577 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 621


>gi|297816734|ref|XP_002876250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322088|gb|EFH52509.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2043

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 32/196 (16%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---------ANA------APIIVAYH 76
               + NG      E H  + H  K+ AL+ I+E+         ++         +++   
Sbjct: 1772 LSAMINGCSDIITELHKVQ-HSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQ 1830

Query: 77   FNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + L  ++K                     +K    ++ +N +  I +L       G G
Sbjct: 1831 HKALLDIIEKDLFQTHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLG 1890

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            LNL    + LVF    W+     Q+ +    + R  + G KR V V+ LI + T++E V+
Sbjct: 1891 LNLT-SADTLVFMEHDWNPMRDHQVNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVM 1949

Query: 182  QRLRTKSTIQDLLLNA 197
               R K ++ + ++NA
Sbjct: 1950 SLQRFKVSVANTVINA 1965


>gi|281351280|gb|EFB26864.1| hypothetical protein PANDA_007143 [Ailuropoda melanoleuca]
          Length = 967

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 326 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 385

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 386 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 445

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 446 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVIL 504

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 505 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 559

Query: 195 LN 196
           + 
Sbjct: 560 IQ 561


>gi|149030493|gb|EDL85530.1| transcription termination factor, RNA polymerase II (predicted),
            isoform CRA_b [Rattus norvegicus]
          Length = 1070

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRT 93
            D+ +   +V    +  LE I +   +   ++   + S L          RL  A   G  
Sbjct: 893  DDIRRSTKVSS-LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLRKNRLTYATIDGSV 951

Query: 94   LDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              K     ++ +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI
Sbjct: 952  NPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI 1010

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1011 -----YRVGQEKDVVMHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1051


>gi|296220824|ref|XP_002756500.1| PREDICTED: lymphoid-specific helicase isoform 2 [Callithrix
           jacchus]
          Length = 881

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 638 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 697

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 698 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 751

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 752 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 790


>gi|255576850|ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 1051

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFP 89
             + E++WKE     + ++ LE I         I+   + S L  L+            F 
Sbjct: 873  VNVEENWKESSKVSKLLECLERIRRSDCGEKSIIFSQWTSFLDLLEIPLRRRAIGFLRFD 932

Query: 90   QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +   T++E+NE  +  +L     + G GLNL    N +     WW+    +Q I
Sbjct: 933  GKLVQKQRERTLKEFNETKEKMVLLMSLKAGGVGLNLTAASN-VFLMDPWWNPAVEEQAI 991

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G KR V V   I ++T++E + Q    K 
Sbjct: 992  MRI-----HRIGQKRTVTVRRFIVKDTLEERMQQVQARKQ 1026


>gi|194205833|ref|XP_001502326.2| PREDICTED: helicase, lymphoid-specific isoform 1 [Equus caballus]
          Length = 837

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  K     +++       L  L                  +  +    +  +N +
Sbjct: 606 MLPEL--KTRGHKVLLFSQMTRMLDILMDYCHFRDFNFSRLDGSMSYSEREKNMHNFNTD 663

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 664 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 717

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 718 VYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|221054017|ref|XP_002261756.1| SNF2-family protein [Plasmodium knowlesi strain H]
 gi|193808216|emb|CAQ38919.1| SNF2-family protein, putative [Plasmodium knowlesi strain H]
          Length = 3207

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
            L    V  DE K        KI  LE ++ +       +++       L  L        
Sbjct: 1689 LCCEPVDKDEYKERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 1748

Query: 86   ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      + +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 1749 FKHQRLDGTMSKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 1807

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 1808 PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 1862

Query: 201  E 201
            +
Sbjct: 1863 K 1863


>gi|148240736|ref|YP_001226123.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147849275|emb|CAK24826.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH
            7803]
          Length = 1070

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 36/217 (16%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVH---DE 54
            Q+ LY     + ++A   A              +  Q+ N      +E+   +       
Sbjct: 832  QKSLYAKTVEDTLDAIARAPRGKRHGQVLGLLTRLKQICNHPALALKEEVASDDFLQRSV 891

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCT 100
            K++ LE I+++        ++   F ++   L + + Q R            +  +    
Sbjct: 892  KLQRLEEILDEVIEAGDRALLFTQF-AEWGHLLQGYLQRRWRSEVPFLSGSTSKGERQAM 950

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + E      L      + G GLNL    + +     WW+     Q  +R       +
Sbjct: 951  VDRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVENQATDR-----AYR 1004

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1005 IGQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDIV 1041


>gi|9972383|gb|AAG10633.1|AC022521_11 Similar nucleotide excision repair proteins [Arabidopsis thaliana]
          Length = 627

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 21/159 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDK 96
              KI+AL      ++E+  +A  IV   F S L  +  A  +                K
Sbjct: 422 TSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAK 481

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D        E    +L     + G  LNL    + +     WW+       +ER    R 
Sbjct: 482 DAALKNFKEEPDCRVLLMSLQAGGVALNLT-AASHVFMMDPWWN-----PAVERQAQDRI 535

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V V   I + T++E +L   + K  + +  L
Sbjct: 536 HRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFERFL 574


>gi|109090014|ref|XP_001095376.1| PREDICTED: lymphoid-specific helicase isoform 10 [Macaca mulatta]
          Length = 739

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 496 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 555

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 556 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 609

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 610 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 648


>gi|303284137|ref|XP_003061359.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456689|gb|EEH53989.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2006

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            G  + A +++ K V   Q+   A    +    +E  +    A +    +++   +++   
Sbjct: 1733 GGKVSAEDASPKFVALKQILLDAGIGRDPDVEREDQETGGFAKKE--SESSGHRVLIFTQ 1790

Query: 77   FNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
                L  +++                      +    ++++N +  I +L       G G
Sbjct: 1791 LKGLLDLVEEELFGTMMRGVSWLRLDGSVPPTRRFDVVRKFNADPSIDVLLLTTHVGGLG 1850

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + +VF    W+ ++  Q ++R       + G K+ V VY L+ + T++E ++ 
Sbjct: 1851 LNLT-SADTVVFLEHDWNPQKDLQAMDR-----AHRLGQKKTVNVYRLLTKGTMEEKIMG 1904

Query: 183  RLRTKSTIQDLLLN 196
              R K  + + ++N
Sbjct: 1905 LQRFKLDVANAVVN 1918


>gi|118092730|ref|XP_421626.2| PREDICTED: similar to proliferation-associated SNF2-like protein
           [Gallus gallus]
          Length = 822

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDP 98
           +  K   L+ ++ +       +++       L  L      + F   R        D++ 
Sbjct: 580 NSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREE 639

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              Q  N+ ++ L      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 640 NMHQFNNDPEVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HR 693

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 694 IGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 730


>gi|326917893|ref|XP_003205229.1| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Meleagris gallopavo]
          Length = 918

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 23/172 (13%)

Query: 50  EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++    E +++  +++  ++   L  LQ+                 + 
Sbjct: 645 ETDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNILQETCKRYGYSYTRLDGNTPVS 704

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N    P  +      + G GLNL  G + L+ + + W+     Q + R+  
Sbjct: 705 QRQQIVDSFNCKFSPAFIFLLSSKAGGVGLNL-VGASHLILYDIDWNPATDIQAMARVW- 762

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK-KETIH 204
               + G K  V +Y L+   +I+E + QR  +K  +   +++  K  E IH
Sbjct: 763 ----RDGQKHTVHIYRLLTTGSIEEKIYQRQISKQDLSGAVVDLSKTSEHIH 810


>gi|321256964|ref|XP_003193422.1| helicase [Cryptococcus gattii WM276]
 gi|317459892|gb|ADV21635.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 1238

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 67/155 (43%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-Q 102
            K++ L  ++   K+    +++       L  L         +     G T  +D   + +
Sbjct: 932  KLQKLFEMLRNLKSEGHRVLIFTQMTRVLDILEMFLSYNGHRYLRLDGSTKIEDRQVLTE 991

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I +  A   S G G+NL  G + + F+   W+       ++R  + R  + G 
Sbjct: 992  RFNSDPRIFVFIASSRSGGVGINLT-GADTVFFYDSDWNPS-----MDRQCMDRAHRIGQ 1045

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  ++ +T++E +L++   K  +  +++ 
Sbjct: 1046 TREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQ 1080


>gi|323490931|ref|ZP_08096126.1| ATP-dependent helicase [Planococcus donghaensis MPA1U2]
 gi|323395411|gb|EGA88262.1| ATP-dependent helicase [Planococcus donghaensis MPA1U2]
          Length = 907

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 29/217 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGA-VYYDEEKHWKEVHDEKI 56
             Y    ++    ++   +  F           K  QL N   +Y  E          + 
Sbjct: 679 ALYEGLVQDTVQKME--TLTGFEKKGLVLKMLSKLKQLCNHPSLYLKEPYTNAAEILPRS 736

Query: 57  KALEVIIEKAN-----AAPIIVAYHFNSDLARLQKA----------FPQGR-TLDKDPCT 100
           + LE I+  A          ++   +      LQ+A          F  G     +    
Sbjct: 737 QKLERIVTLAGEIAERGEQCLIFTQYIGMGHILQQAINELYGHEVPFLTGSMPKQQRDSL 796

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + ++  GK P+      + G GLNL    ++L     WW+     Q  +R       + G
Sbjct: 797 VAQFQAGKFPIFILSLKAGGTGLNLTAATHVL-HADRWWNPAVENQATDR-----AYRIG 850

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V V+  +   TI+E +   L  K ++ +  + +
Sbjct: 851 QTQFVHVHKFVTIGTIEEKIDSLLVQKQSMSEEFIQS 887


>gi|118370404|ref|XP_001018403.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89300170|gb|EAR98158.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1547

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
               K+K L+ ++ K       +++       +  L+    + +             D+  
Sbjct: 1279 DSAKLKYLDALLTKLKREGHRVLIFCQMTRMIDILEDFMTRKKYKFFRLDGSCNISDRRD 1338

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +     K         + G G+ L    ++++F+   W+     Q ++R       +
Sbjct: 1339 MVNEFQTSDKTFAFLLSTRAGGLGVTLT-AADVVIFYDNDWNPTMDAQAMDR-----AHR 1392

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY L+ + TI+E +L+R + K  +Q  + + 
Sbjct: 1393 IGQTKEVLVYRLVTKGTIEERILKRAQQKQMVQSTVYSG 1431


>gi|329930625|ref|ZP_08284117.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328934720|gb|EGG31215.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 986

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 27  SKTVK--CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
           +   K    +L  G    D E         K++ L  ++++        ++   +     
Sbjct: 779 ALLTKEPLPELPGGGGLLDTEAVVNR--SAKLERLLSMVKELRDEGERCLIFTQYIGMGE 836

Query: 83  RLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNL 125
            +++   Q                     I+++    +P      ++     + G GLNL
Sbjct: 837 MMRQVLHQELGEPVLYLNGSTPKGTRDRMIEQFQSRTLPPEEQPNVMILSIKAGGVGLNL 896

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N +  F  WW+     Q  +R       + G  + V VY  I+  T++E + + L 
Sbjct: 897 T-AANHVFHFDRWWNPAVENQATDR-----AYRMGQTKDVQVYKFISMGTLEERIDEMLE 950

Query: 186 TKSTIQDLLLNA 197
           +K  + D ++ +
Sbjct: 951 SKQQLSDQVIAS 962


>gi|296220822|ref|XP_002756499.1| PREDICTED: lymphoid-specific helicase isoform 1 [Callithrix
           jacchus]
          Length = 837

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 594 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 653

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 654 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 707

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 708 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|157822353|ref|NP_001099841.1| helicase, lymphoid specific [Rattus norvegicus]
 gi|149062802|gb|EDM13225.1| rCG47275 [Rattus norvegicus]
          Length = 837

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       ++V     S L  L                  +  + 
Sbjct: 594 VTNSGKFLILDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSER 653

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N + ++ L      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 654 EKNIYSFNTDPEVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 707

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 708 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|201066350|ref|NP_001128432.1| RAD54 like [Rattus norvegicus]
 gi|197246624|gb|AAI69034.1| Rad54l protein [Rattus norvegicus]
          Length = 748

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 487 SKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLV-SNYTQTLDLFEKLCRARRYLYVRLDG 545

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 546 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 605 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 647


>gi|20987234|gb|AAH21643.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 487 SKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLV-SNYTQTLDLFEKLCRVRRYLYVRLDG 545

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 546 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 605 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 647


>gi|76879794|dbj|BAE45737.1| putative protein product of Nbla10143 [Homo sapiens]
          Length = 372

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 129 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 188

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 189 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDPQAQDRC----- 242

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 243 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 281


>gi|171906595|ref|NP_033041.3| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906597|ref|NP_001116430.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906599|ref|NP_001116431.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|51316197|sp|P70270|RAD54_MOUSE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=mHR54; Short=mRAD54
 gi|123244614|emb|CAM20670.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|123253898|emb|CAM22667.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|148698674|gb|EDL30621.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 487 SKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLV-SNYTQTLDLFEKLCRVRRYLYVRLDG 545

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 546 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 605 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 647


>gi|1495708|emb|CAA66380.1| RAD54 [Mus musculus]
          Length = 747

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 487 SKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLV-SNYTQTLDLFEKLCRVRRYLYVRLDG 545

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 546 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 605 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 647


>gi|307202701|gb|EFN82007.1| Lymphoid-specific helicase [Harpegnathos saltator]
          Length = 587

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K+  L+ ++ K  A    +++       L  ++                  ++    
Sbjct: 373 SSGKLLVLDAMLAKLKAQGHKVLLFSTMTMILDIIEDYLSLRDYKYLRLDGNDNIELRKR 432

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N  K I L      + G GLNL    + ++ +   W+ +   Q + R       +
Sbjct: 433 NIDNFNNNKDIFLFLISIRAGGIGLNL-AAADTVIIYDSDWNPQVDIQAMARC-----HR 486

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V +Y L  + TIDE ++ R  +K  ++ ++++
Sbjct: 487 IGQTKPVVIYKLCTKGTIDEAIINRSESKRILEKMVIS 524


>gi|119570415|gb|EAW50030.1| helicase, lymphoid-specific, isoform CRA_e [Homo sapiens]
          Length = 432

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 189 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 248

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 249 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 302

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 303 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 341


>gi|15217826|ref|NP_171767.1| DNA repair protein, putative [Arabidopsis thaliana]
 gi|332189335|gb|AEE27456.1| putative DNA repair protein [Arabidopsis thaliana]
          Length = 678

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 21/159 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDK 96
              KI+AL      ++E+  +A  IV   F S L  +  A  +                K
Sbjct: 505 TSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAK 564

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D        E    +L     + G  LNL    + +     WW+       +ER    R 
Sbjct: 565 DAALKNFKEEPDCRVLLMSLQAGGVALNLT-AASHVFMMDPWWN-----PAVERQAQDRI 618

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V V   I + T++E +L   + K  + +  L
Sbjct: 619 HRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTL 657


>gi|291239296|ref|XP_002739559.1| PREDICTED: Lodestar protein-like [Saccoglossus kowalevskii]
          Length = 1134

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 56   IKALEVI-IEKANAAPI--IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQ 102
            +  L+ I  +     P+  ++   +   L  +     +            T      +++
Sbjct: 965  MDGLKDIRAKSPAGKPMKTVIVSQWTKMLDIMVHHLKENGFKYCVIQGNVTPKARSESVE 1024

Query: 103  EWN-EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N   K P ++     + G GLNL  GGN L    + W+    QQ  +RI      + G
Sbjct: 1025 NFNKNPKGPEVMLVSLRAGGVGLNL-IGGNHLFLLDMHWNPALEQQACDRI-----YRVG 1078

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             ++ VF++  + +NT++E +L+  + K+ +   +L+  + 
Sbjct: 1079 QEKEVFIHKFVCKNTVEEKILELQKKKTNLATNVLSGDRA 1118


>gi|239610005|gb|EEQ86992.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis ER-3]
          Length = 862

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 42  YDEEKHWKE---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
            D+  H  E       K+  L+ +I    +    I++   F + L  LQ           
Sbjct: 600 DDDPSHIDESLITSSGKMLLLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNC 659

Query: 87  -AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +       IQ +N      +      + G G+NL    + ++ F   W+ ++ 
Sbjct: 660 CRIDGAVSQVDRQAQIQAFNTNQDYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQD 718

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Q        R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 719 LQA-----QDRAHRIGQTKPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGK 768


>gi|260827184|ref|XP_002608545.1| hypothetical protein BRAFLDRAFT_128832 [Branchiostoma floridae]
 gi|229293896|gb|EEN64555.1| hypothetical protein BRAFLDRAFT_128832 [Branchiostoma floridae]
          Length = 1220

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  L+ ++   +     ++V       +  L+                        
Sbjct: 965  SSGKLLLLDKMLPMLHKQGHKVLVFSQMTKMMDVLEDYCLYRGHKYCRLDGTMAYPDRQE 1024

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +N +    +      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 1025 QIDTFNKDPDYFVFLLSTRAGGLGINLT-AADTVIIYDSDWNPQCDLQAQDRC-----HR 1078

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G  R V VY LI  NTID+ +++R   K  ++ ++++  K
Sbjct: 1079 IGQTRPVVVYRLITANTIDQKIVERAAGKRKLEKMVMHKGK 1119


>gi|320169825|gb|EFW46724.1| DNA repair protein RAD54 [Capsaspora owczarzaki ATCC 30864]
          Length = 941

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNS------DLARLQK----AFPQG 91
            + +   H  K + L+ +   ++      +++  ++        DLARL+          
Sbjct: 600 GRTFNPAHSGKFQVLDTMLAYVKSTTNDRVVLISNYTQTIDLFEDLARLRGYRFVRLDGT 659

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            ++      + E+N     + L      + G G+NL  GGN LV F   W+     Q + 
Sbjct: 660 LSVKARQKLVDEFNNPSSNVFLFLLSSKAGGCGINL-IGGNRLVLFDPDWNPASDGQAMA 718

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K+ V++Y  +   TI+E + QR   K  +   +++
Sbjct: 719 RVW-----RDGQKKKVYLYRFLGTGTIEEKIFQRQAHKMALSSCVVD 760


>gi|303279422|ref|XP_003059004.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460164|gb|EEH57459.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1131

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L  I+       I++  ++   L  +Q               G ++ K    +++
Sbjct: 538 AVLARLLAILRAETKDRIVIISNYTQTLDLVQFLCKQNNYPHCRLDGGTSITKRQKLVRQ 597

Query: 104 WNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G G+NL  GGN LV F   W+    +Q   R       + G 
Sbjct: 598 FNDPTENCFVFLLSSKAGGCGINL-IGGNRLVLFDPDWNPANDKQAAARCW-----RDGQ 651

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           K+  ++Y L A  +I+E V QR  +K ++Q+++
Sbjct: 652 KKKCYLYRLFATGSIEEKVFQRQLSKESLQNVV 684


>gi|119570416|gb|EAW50031.1| helicase, lymphoid-specific, isoform CRA_f [Homo sapiens]
          Length = 822

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 579 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 638

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 639 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 692

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 693 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 731


>gi|114631897|ref|XP_001150864.1| PREDICTED: helicase, lymphoid-specific isoform 4 [Pan troglodytes]
          Length = 822

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 579 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 638

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 639 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 692

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 693 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 731


>gi|47156981|gb|AAT12357.1| helicase MOT1-like protein [Antonospora locustae]
          Length = 509

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 37/205 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA----APII 72
           G   ++ +S ++  + L+L +                 K+ ALE ++            +
Sbjct: 298 GNVNKSTSSFTRIQRLLKLCSTF---------------KLGALEDLLVLMGGNEMKTKAL 342

Query: 73  VAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           V     S +  + K                          + ++N     +LF      G
Sbjct: 343 VFCQLKSTIDMITKHVNGVFASLKHLRLDGNVPPKNRQKLVADFNTQDYNILFLTTQIGG 402

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL  G + ++ +   W+     Q ++R+      + G K+ V V+ +I ++TI+E V
Sbjct: 403 LGLNLT-GADTVILYEHDWNPFNDLQAMDRV-----HRLGQKKTVNVFRIILKDTIEEKV 456

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           +     K  + + L+N   K+   +
Sbjct: 457 MSYQNFKMYVANALVNYENKDVSQM 481


>gi|316974864|gb|EFV58334.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1667

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 39/176 (22%)

Query: 53   DEKIKALEVIIEK---------------ANA---APIIVAYHFNSDLARLQKAFPQG--- 91
              K++AL+ ++ +               +N       ++   + S L  L   F +G   
Sbjct: 1424 SGKMQALKQLLSECSIGSSNLADCDAVQSNGISAHRALIFCQYKSALNLLCTFFTRGYFG 1483

Query: 92   -----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          ++     Q++N +  I LL       G GLNL  G ++++FF   W
Sbjct: 1484 KGISFLKMDGSVEPERRQELAQQFNSDPSIDLLILTTQIGGLGLNLT-GADVVIFFDHDW 1542

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +     Q ++R       + G  R V VY LI+Q T++E +++  + K+ + D ++
Sbjct: 1543 NPCRDIQAMDR-----AHRIGQTRTVNVYRLISQGTLEEKIMRFQKFKNFMADTVI 1593


>gi|291404474|ref|XP_002718566.1| PREDICTED: helicase, lymphoid-specific [Oryctolagus cuniculus]
          Length = 837

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++       L  L                  +  + 
Sbjct: 594 VTNSGKFLILDRMLPELQKRGHKVLLFSQMTRMLDILMDYCHLRNFNFSRLDGSMSYSER 653

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N +  + +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 654 EKNMHSFNTDPDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 707

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 708 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|158295466|ref|XP_316223.4| AGAP006165-PA [Anopheles gambiae str. PEST]
 gi|157016051|gb|EAA11849.4| AGAP006165-PA [Anopheles gambiae str. PEST]
          Length = 3418

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-- 101
            K++ L+ +++K  +    +++       L  L+              G T  +    +  
Sbjct: 1728 KLQTLDRLLKKLKSEGHRVLIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQVLME 1787

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  N+ ++        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1788 RFNNDRRMFAFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1841

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1842 TRDVHIYRLVSEKTIEENILKKANQKRILGDLAIEG 1877


>gi|148232962|ref|NP_001086442.1| helicase, lymphoid-specific [Xenopus laevis]
 gi|66911167|gb|AAH97562.1| HELLS protein [Xenopus laevis]
          Length = 838

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K   L+ ++ +       +++       L  L                  +      
Sbjct: 600 SSGKFLLLDRLLPEMKKRGHKVLIFSQMTMMLDILMDYCYYKKFNFCRLDGSMSYTDREE 659

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +N +  + +      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 660 NMRSFNTDPDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQADLQAQDRC-----HR 713

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  R V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 714 IGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKLVI 750


>gi|311253615|ref|XP_003125618.1| PREDICTED: DNA repair and recombination protein RAD54B-like,
           partial [Sus scrofa]
          Length = 838

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 639 EEESGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTPIS 698

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 699 QRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 757 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTK 798


>gi|167522321|ref|XP_001745498.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775847|gb|EDQ89469.1| predicted protein [Monosiga brevicollis MX1]
          Length = 817

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 76/210 (36%), Gaps = 35/210 (16%)

Query: 13  CDLQGENIEAFNSASKTVKCLQL--------------ANGAVYYDEEKHWKEVHDEKIKA 58
            +L   N  A  + S   + +QL                   Y  +E   ++    K+K 
Sbjct: 533 AELAQRNSSAVVNVSLQNRLMQLRKVCNHPYLIEYPLTATGDYRIDEALVQQG--GKLKI 590

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-N 105
           L+ ++ +  A    +++       L  LQ                    +    + ++  
Sbjct: 591 LDQLLPRIKAEGRKVLIFSQMTKMLDILQDYCWLRDYGFVRLDGSVHYTEREEALDKFAK 650

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G GLNL    +  + +   W+ ++  Q  +R       + G +  V
Sbjct: 651 DSDTFIFLLSTRAGGLGLNL-VSADTCIIYDSDWNPQQDLQAQDRC-----HRIGQRNPV 704

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y LI  NT+D+ +L+R  +K  ++ +++
Sbjct: 705 IIYRLITANTVDQRILERAESKRRLEKMVM 734


>gi|168056923|ref|XP_001780467.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162668143|gb|EDQ54757.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 698

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKA 58
           K+YHK       C ++    E  N +  T+  + L  G V   + K      +   K +A
Sbjct: 462 KKYHKMAVFGNECTVERVQEELSNYSDFTLHRMCLVYGGVPGGQGKLDDHHALASAKCRA 521

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQE--WN 105
           L  ++ +        ++   + + L  L+ A            G T   +   + +   N
Sbjct: 522 LVTLLPQLKKEGHRPLIFSQWTNMLDILEWALDVIGLRFTRLDGSTPVTERQNLVDEYNN 581

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              I +      + G GLNL     +++         +    ++R    R  + G  + V
Sbjct: 582 NPDIFVFLLSTRAGGQGLNLTGADTVIIHD------VDFNPQMDRQAEDRCHRIGQTKPV 635

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+ + T+DE + +  + K  +   +L +
Sbjct: 636 TVYRLVTKGTVDESIFRIAQQKLVLDAAVLES 667


>gi|308810895|ref|XP_003082756.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein (ISS)
           [Ostreococcus tauri]
 gi|116061225|emb|CAL56613.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein (ISS)
           [Ostreococcus tauri]
          Length = 1008

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 56  IKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           + AL  +  + N      IV   + + +  ++    + +           + +    +Q 
Sbjct: 841 VNALRDMRNQENGQLNKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQA 900

Query: 104 W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +  + ++     S G GLNLQ   N +     WW+     Q +      R  + G  
Sbjct: 901 FREDPNVSVILMSLKSGGEGLNLQ-AANYVYVLEPWWNPAVEMQAV-----MRAHRIGQH 954

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R V       + TI+E +++    K  + +  ++ 
Sbjct: 955 RPVTAVRFSTKGTIEERMMELQEKKQLVFEGCMDG 989


>gi|26353994|dbj|BAC40627.1| unnamed protein product [Mus musculus]
          Length = 747

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++  TI+
Sbjct: 575 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKICYIYRLLSAGTIE 628

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + QR   K  +   +++
Sbjct: 629 EKIFQRQSHKKALSSCVVD 647


>gi|301098711|ref|XP_002898448.1| SNF2 family helicase/ATPase and F-box protein, putative [Phytophthora
            infestans T30-4]
 gi|262105219|gb|EEY63271.1| SNF2 family helicase/ATPase and F-box protein, putative [Phytophthora
            infestans T30-4]
          Length = 2503

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ L V++          ++    +S L  L+                
Sbjct: 1067 PDKALVQFDCGKLQQLAVLLRTLKRGGHRCLIFTQMSSMLNILEAFLNLHGHTYFRLDGA 1126

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +DK    ++ +N   KI        S G G+NL  G + ++F+   W+     Q    
Sbjct: 1127 TKVDKRQMLMERFNRDEKIFCFILSTRSGGLGINLT-GADAVIFYDSDWNPAMDAQA--- 1182

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y L++++T++E +L++ + K  +  L+++
Sbjct: 1183 --QDRAHRIGQTRDVHIYRLVSEHTVEENILRKAQQKRHLDFLVMS 1226


>gi|255010206|ref|ZP_05282332.1| SNF family helicase [Bacteroides fragilis 3_1_12]
          Length = 1013

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
            ++  QLA                  K+  +    E  ++    +++   F   L  +  
Sbjct: 827 ILRLRQLACHPQMILPG---FIGESGKLNLIIETFETLRSEGHKVLIFSSFVKHLELVAD 883

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            F +         G + ++     +   + +I        + G GLNL     + +    
Sbjct: 884 EFRKRQWDYALLTGSSTNRPEEIARFSRDPRIQAFLISLKAGGVGLNLTQADYVFI-IDP 942

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+            + R  + G  + V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 943 WWNPAAEA-----QAIARAHRIGQDKQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 995


>gi|47208011|emb|CAF91219.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 454

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
              +++     S L  L                  T       I ++  + ++ L     
Sbjct: 252 GHKVLIFSQMTSILDILMDYCFLRGFQYSRLDGSMTFADREENITKFSKDPQVFLFLLST 311

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q  +R       + G  + V VY L+  NTI
Sbjct: 312 RAGGLGINLT-AADTVIIFDSDWNPQADLQAQDRC-----HRIGQTKPVVVYRLVTANTI 365

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D+ +L+R   K  ++ +++
Sbjct: 366 DQKILERASNKRKLEQMVI 384


>gi|170577655|ref|XP_001894090.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158599485|gb|EDP37070.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 805

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K+     ++   +     +++  +F   L  L++                   K  
Sbjct: 475 TDSGKLNVFVELLATFREQEEKVVIVSNFTQTLDLLEELCRTLYYTILRLDGSTEAKKRM 534

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++E+N    K         + G GLNL  G N ++ F   W+     Q + RI     
Sbjct: 535 EIVEEFNSLSNKNYAFLLSAKAGGLGLNL-VGANRMILFDSDWNPAVDMQAMARIW---- 589

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G ++   ++ LI   T+DE +LQR   KS++
Sbjct: 590 -RQGQEKPCHIFRLITAGTVDEKILQRQIKKSSL 622


>gi|109090000|ref|XP_001095601.1| PREDICTED: lymphoid-specific helicase isoform 12 [Macaca mulatta]
          Length = 883

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 640 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 699

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 700 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 753

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 754 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 792


>gi|46108786|ref|XP_381451.1| hypothetical protein FG01275.1 [Gibberella zeae PH-1]
          Length = 1023

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
           E+   K++ L  +I   + N   ++V   F+  +  LQ+   Q +          T+++ 
Sbjct: 840 EMDSGKVRKLLELINHYQENGDRVLVFSKFSRVIELLQEVLAQQQIQHRVLMGSTTVEER 899

Query: 98  PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I E+NE   IP+      + G G+NL    N ++ F    + ++  Q        R 
Sbjct: 900 QTLIDEFNEDSDIPVFLLTTGAGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRA 953

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR V +  LIA NTI+EL+ +  + K  + + +  A+  E
Sbjct: 954 HRLGQKRDVEIIRLIATNTIEELIYKACQKKIELANKVTGAVADE 998


>gi|119181658|ref|XP_001242026.1| hypothetical protein CIMG_05922 [Coccidioides immitis RS]
          Length = 835

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +          K+  L+ ++    +    +++   F + L  LQ                
Sbjct: 584 DIDESLVTASGKMLLLDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGA 643

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +       I  +N +    +      + G G+NL    + ++ +   W+ ++  Q    
Sbjct: 644 VSQADRQAQINAFNADPDYKIFLLSTRAGGLGINLT-AADTVILYDSDWNPQQDLQA--- 699

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G  + V VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 700 --QDRAHRIGQTKPVIVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 746


>gi|261198639|ref|XP_002625721.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis
           SLH14081]
 gi|239594873|gb|EEQ77454.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis
           SLH14081]
          Length = 862

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 42  YDEEKHWKE---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
            D+  H  E       K+  L+ +I    +    I++   F + L  LQ           
Sbjct: 600 DDDPSHIDESLITSSGKMLLLDGLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNC 659

Query: 87  -AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +       IQ +N      +      + G G+NL    + ++ F   W+ ++ 
Sbjct: 660 CRIDGAVSQVDRQAQIQAFNTNQDYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQD 718

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Q        R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 719 LQA-----QDRAHRIGQTKPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGK 768


>gi|118089662|ref|XP_420329.2| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1
           [Gallus gallus]
          Length = 1031

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 386 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 445

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 446 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 505

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 506 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 564

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI  NT++E +++R   K  +  +++ 
Sbjct: 565 AMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 609


>gi|32425420|gb|AAH15477.1| HELLS protein [Homo sapiens]
          Length = 317

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 74  VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 133

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 134 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 187

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 188 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 226


>gi|300785422|ref|YP_003765713.1| helicase [Amycolatopsis mediterranei U32]
 gi|299794936|gb|ADJ45311.1| putative helicase [Amycolatopsis mediterranei U32]
          Length = 1005

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 20/184 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN----- 78
            +   K  Q+ N   +   +         K+  LE I+ +  A+   ++    +      
Sbjct: 800 LAAITKLKQVCNHPAHLLHDGSPIGQRSGKVTRLEEILAEILASGDRVLCFTQYTEFGHL 859

Query: 79  ---SDLARL---QKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
                  RL         G         ++ +  G  P +L     + G GL L   G +
Sbjct: 860 LVPHLSDRLGAEVAFLHGGLAKGARDAIVERFQAGDGPRILVLSLKAGGSGLTLTAAGQV 919

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L     WW+     Q  +R       + G +R V V   +   TI+E +   +  K  + 
Sbjct: 920 L-HLDRWWNPAVENQATDR-----AFRIGQRRNVQVRKFVCPGTIEERIDSLITRKRALA 973

Query: 192 DLLL 195
            +++
Sbjct: 974 GMVV 977


>gi|225557945|gb|EEH06230.1| lymphocyte-specific helicase [Ajellomyces capsulatus G186AR]
          Length = 862

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 43  DEEKHWKEV---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------- 86
           D+  H  +       K+  L+ +I    +    I++   F + L  LQ            
Sbjct: 601 DDPSHIDDTLITSSGKMLLLDRLIPCLISKGHKILIFSQFKTQLDLLQDYASYLRGWNCC 660

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +       IQ +N +    +      + G G+NL    + ++ F   W+ ++  
Sbjct: 661 RIDGAVSQVDRQAQIQAFNTDPDYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQDL 719

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Q        R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 720 QA-----QDRAHRIGQTKPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGK 768


>gi|109090006|ref|XP_001095492.1| PREDICTED: lymphoid-specific helicase isoform 11 [Macaca mulatta]
          Length = 805

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 562 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 621

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 622 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 675

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 676 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 714


>gi|83286456|ref|XP_730169.1| chromodomain-helicase-DNA-binding protein, CHD-1-related [Plasmodium
            yoelii yoelii str. 17XNL]
 gi|23489816|gb|EAA21734.1| chromodomain-helicase-DNA-binding protein, CHD-1-related [Plasmodium
            yoelii yoelii]
          Length = 2541

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
            L    +  DE +        KI  LE ++ +       +++       L  L        
Sbjct: 1216 LCCEPIDKDEYRERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 1275

Query: 86   ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      T +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 1276 FKHQRLDGTMTKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 1334

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 1335 PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 1389

Query: 201  E 201
            +
Sbjct: 1390 K 1390


>gi|313148000|ref|ZP_07810193.1| Snf2 family helicase [Bacteroides fragilis 3_1_12]
 gi|313136767|gb|EFR54127.1| Snf2 family helicase [Bacteroides fragilis 3_1_12]
          Length = 960

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 20/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
            ++  QLA                  K+  +    E  ++    +++   F   L  +  
Sbjct: 774 ILRLRQLACHPQMILPG---FIGESGKLNLIIETFETLRSEGHKVLIFSSFVKHLELVAD 830

Query: 87  AFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            F +         G + ++     +   + +I        + G GLNL     + +    
Sbjct: 831 EFRKRQWDYALLTGSSTNRPEEIARFSRDPRIQAFLISLKAGGVGLNLTQADYVFI-IDP 889

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           WW+            + R  + G  + V  Y  I Q +I+E ++Q    K  + +  +
Sbjct: 890 WWNPAAEA-----QAIARAHRIGQDKQVIAYRFITQGSIEEKIIQLQEEKRKLAETFI 942


>gi|292496|gb|AAA80559.1| transcription activator [Homo sapiens]
          Length = 976

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 335 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 394

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 395 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 454

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 455 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 513

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 514 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 568

Query: 195 LN 196
           + 
Sbjct: 569 IQ 570


>gi|317031266|ref|XP_001393115.2| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus niger CBS
            513.88]
          Length = 1136

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
            EK W  +   KI+    I+     +      I+   F S L  L     ++ +   R   
Sbjct: 955  EKTW--MSSAKIEKAMEILRDVYHREGNEKTIIFSQFTSLLDLLEIPIARQGWDYRRYDG 1012

Query: 93   ---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q ++
Sbjct: 1013 SMRPADRNTSVMDFTDNEDCRIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYVEEQAVD 1071

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R       + G  R V ++ ++ ++T+++ +L+    K  + +  L+
Sbjct: 1072 R-----AHRIGQVRPVQIHRIVVKDTVEDRILELQDKKRELVEGALD 1113


>gi|238487276|ref|XP_002374876.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            flavus NRRL3357]
 gi|220699755|gb|EED56094.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            flavus NRRL3357]
          Length = 1172

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W  V   KI+    I+   +      I+   F S L  L+          + +    
Sbjct: 994  EKTW--VSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRRYDGSM 1051

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 1052 KPGDRNSAVLDFTDSPDCKIMLVSLKAGNSGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1109

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ QNT+++ +L+    K  + +  L+
Sbjct: 1110 ----AHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALD 1150


>gi|149745541|ref|XP_001500568.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Equus
           caballus]
          Length = 1057

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LN 196
           + 
Sbjct: 650 IQ 651


>gi|296220832|ref|XP_002756504.1| PREDICTED: lymphoid-specific helicase isoform 6 [Callithrix
           jacchus]
          Length = 821

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
            ++  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 578 VINSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRNFNFSRLDGSMSYSER 637

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 638 ERNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 691

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 692 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 730


>gi|328778981|ref|XP_001121991.2| PREDICTED: lymphoid-specific helicase-like [Apis mellifera]
          Length = 379

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA-----FPQGRT-----LDKD 97
                K+  L+ ++ +       +++       L  ++       F   R      L   
Sbjct: 169 VTSSGKLLVLDAMLARLKKQGHKVLLFSTMTMILDVIEDYLSLRDFKYVRLDGSIKLSVR 228

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              IQ +N   +I L      + G GLNL  G + ++ +   W+ +   Q + R      
Sbjct: 229 KENIQNFNTNPEIFLFLISTRAGGVGLNL-IGADTVIIYDSDWNPQVDIQAMARC----- 282

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V +Y L  + TIDE+++ R   K  ++ ++++
Sbjct: 283 HRIGQTRPVMIYKLCTKGTIDEVIINRAEAKRLLEKVVIS 322


>gi|292498|gb|AAA80560.1| transcription activator [Homo sapiens]
          Length = 769

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|190346518|gb|EDK38617.2| hypothetical protein PGUG_02715 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1155

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 27/163 (16%)

Query: 53   DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFP------------QGRTL-D 95
              KI+AL    + I E++    ++V   F+S L  ++                 GR    
Sbjct: 978  SSKIQALILHLQQIQEQSPGERVVVFSQFSSYLDLIENELKVQGSDIFHVVKFDGRLKMH 1037

Query: 96   KDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    I+ +N       + +L     + G GLNL    +       WW      Q I+RI
Sbjct: 1038 ERNQLIESFNNDDTSPRVSILLLSLKAGGVGLNLT-SASRAFMMDPWWSPSVEDQAIDRI 1096

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                  + G  R V V   I Q +I+E +L+    K  I + +
Sbjct: 1097 -----HRIGQVRNVKVTRFIIQESIEEKMLKIQERKKQIGEAV 1134


>gi|320034447|gb|EFW16391.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Coccidioides posadasii str. Silveira]
          Length = 869

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +          K+  L+ ++    +    +++   F + L  LQ                
Sbjct: 618 DIDESLVTASGKMLLLDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGA 677

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +       I  +N +    +      + G G+NL    + ++ +   W+ ++  Q    
Sbjct: 678 VSQADRQAQINAFNADPDYKIFLLSTRAGGLGINLT-AADTVILYDSDWNPQQDLQA--- 733

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G  + V VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 734 --QDRAHRIGQTKPVIVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 780


>gi|58261190|ref|XP_568005.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134115795|ref|XP_773611.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74682377|sp|Q5K8T2|SWR1_CRYNE RecName: Full=Helicase SWR1
 gi|50256237|gb|EAL18964.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57230087|gb|AAW46488.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1246

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 65/155 (41%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-Q 102
            K++ L  ++    +    +++       L  L         +     G T  +D   + +
Sbjct: 939  KLQKLFEMLRDLKSEGHRVLIFTQMTRVLDILEMFLSHNGHRYLRLDGSTKIEDRQVLTE 998

Query: 103  EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N   +I +  A   S G G+NL  G + + F+   W+       ++R  + R  + G 
Sbjct: 999  RFNSDSRIFVFIASSRSGGVGINLT-GADTVFFYDSDWNPS-----MDRQCMDRAHRIGQ 1052

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  ++ +T++E +L++   K  +  +++ 
Sbjct: 1053 TREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQ 1087


>gi|238489253|ref|XP_002375864.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
 gi|220698252|gb|EED54592.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
          Length = 819

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K+  L+ ++ +  AN   I++   F S L  LQ               G     D 
Sbjct: 577 TASGKMLLLDRLVARLLANGHKILIFSQFKSQLDILQDWATQLRSWNCCRIDGAISQTDR 636

Query: 99  CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N +    +      + G G+NL    + ++ F   W+ ++  Q        R 
Sbjct: 637 RDQIKAFNTDPDYKIFLLSTRAGGQGINL-MAADTVILFDSDWNPQQDLQA-----QDRA 690

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 691 HRIGQTRPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 733


>gi|312374256|gb|EFR21846.1| hypothetical protein AND_16272 [Anopheles darlingi]
          Length = 1024

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKHWKEV--- 51
           K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E          
Sbjct: 369 KMQREWYTKILMKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 428

Query: 52  ---HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K       +++       L  L+              G+T  +D
Sbjct: 429 LLENSGKMVVLDKLLRKLQEQESRVLIFSQMTRMLDILEDFCHWRGYHYCRLDGQTPHED 488

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I ++N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 489 RSNMIADYNAPDSKKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 543

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 544 -AHRIGQKKQVRVFRLITENTVEEKIVERAEVKLKLDKLVIQ 584


>gi|302837688|ref|XP_002950403.1| hypothetical protein VOLCADRAFT_74566 [Volvox carteri f.
           nagariensis]
 gi|300264408|gb|EFJ48604.1| hypothetical protein VOLCADRAFT_74566 [Volvox carteri f.
           nagariensis]
          Length = 684

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 23/163 (14%)

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLD 95
           H  K+ AL  ++       ++   ++V     S L  +++                    
Sbjct: 432 HSPKLAALRDLLATCGGGNSSGHRMLVFAQHKSLLDIVERDLMAPYGVSYLRLDGSVEAG 491

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +Q +N +  I +L       G GLNL    + +VF    W+  +  Q ++R    
Sbjct: 492 ARFGIVQRFNSDPTIDVLLLTTGVGGVGLNLT-SADTVVFLEHDWNPMKDMQAMDR---- 546

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G +R V VY ++ + T++E V+   + K  +   ++NA
Sbjct: 547 -AHRLGQRRTVNVYRILTRGTLEERVMGLQQFKIDVAAAVVNA 588


>gi|303318669|ref|XP_003069334.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109020|gb|EER27189.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 869

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +          K+  L+ ++    +    +++   F + L  LQ                
Sbjct: 618 DIDESLVTASGKMLLLDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGA 677

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +       I  +N +    +      + G G+NL    + ++ +   W+ ++  Q    
Sbjct: 678 VSQADRQAQINAFNADPDYKIFLLSTRAGGLGINLT-AADTVILYDSDWNPQQDLQA--- 733

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G  + V VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 734 --QDRAHRIGQTKPVIVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 780


>gi|168042528|ref|XP_001773740.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
 gi|162674996|gb|EDQ61497.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
          Length = 1791

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 66/193 (34%), Gaps = 24/193 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
            L     ++  +  ++      A+G +  +       V D+ +  L+          +++ 
Sbjct: 1013 LCDGLEDSLTAKLRSNANDSNASGNLLQNSSGKMILV-DKLLPKLKD-----AGRRVLIF 1066

Query: 75   YHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEW--NEGKIPLLFAHPASCGHG 122
              F   L  L+              G+    +    I  +   +  I +      + G G
Sbjct: 1067 SQFTIMLDLLEDYMIMKGYSYERIDGKIRGSERQAAIDRYSAKDSDIFVFLLSTRAGGLG 1126

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + L    +  + +   W+ +   Q + R       + G  + V +Y LI +NT +E + +
Sbjct: 1127 ITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQTKDVKIYRLITRNTYEERLFE 1180

Query: 183  RLRTKSTIQDLLL 195
                K  + + +L
Sbjct: 1181 CSSRKYGLDEAIL 1193


>gi|21071044|ref|NP_003060.2| probable global transcription activator SNF2L1 isoform a [Homo
           sapiens]
 gi|115311627|sp|P28370|SMCA1_HUMAN RecName: Full=Probable global transcription activator SNF2L1;
           AltName: Full=ATP-dependent helicase SMARCA1; AltName:
           Full=Nucleosome-remodeling factor subunit SNF2L;
           AltName: Full=SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 1
 gi|57208177|emb|CAI42683.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208838|emb|CAI42613.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|109658918|gb|AAI17448.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|119632240|gb|EAX11835.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_c [Homo
           sapiens]
          Length = 1054

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|82595847|ref|XP_726017.1| nucleotide excision repair protein [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481248|gb|EAA17582.1| similar nucleotide excision repair proteins-related [Plasmodium
           yoelii yoelii]
          Length = 818

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 24/169 (14%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKD 97
              KI+A+   ++          ++   + S L  ++    +   +            ++
Sbjct: 646 TSTKIEAIFEEVQNVIYNTDDKCLIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMVSRN 705

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                  N+ ++ +L     + G GLNLQ   N +     WW+     Q I+R       
Sbjct: 706 NILYNFNNDKQLRVLLISLKAGGEGLNLQV-ANRIFIVDPWWNPAAELQAIQR-----AH 759

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
           + G  + V+    I +NT++E ++Q    K  + D  +    +A++K T
Sbjct: 760 RIGQTKTVYAIRFIIENTVEEKIIQLQNKKQLVFDCTIGNSGSAMQKLT 808


>gi|297492405|ref|XP_002699560.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Bos
           taurus]
 gi|296471282|gb|DAA13397.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Bos taurus]
          Length = 1057

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNIPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LN 196
           + 
Sbjct: 650 IQ 651


>gi|158295468|ref|XP_001688808.1| AGAP006165-PB [Anopheles gambiae str. PEST]
 gi|157016052|gb|EDO63814.1| AGAP006165-PB [Anopheles gambiae str. PEST]
          Length = 2856

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-- 101
            K++ L+ +++K  +    +++       L  L+              G T  +    +  
Sbjct: 1728 KLQTLDRLLKKLKSEGHRVLIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQVLME 1787

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  N+ ++        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1788 RFNNDRRMFAFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1841

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1842 TRDVHIYRLVSEKTIEENILKKANQKRILGDLAIEG 1877


>gi|57208178|emb|CAI42684.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208839|emb|CAI42614.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
          Length = 1005

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 392 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 452 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 511

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LN 196
           + 
Sbjct: 626 IQ 627


>gi|167517999|ref|XP_001743340.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778439|gb|EDQ92054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 927

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 40/229 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKH 47
           K Y    + QR+ Y  +  ++IEA N A K  K       +QL    N    +D  E   
Sbjct: 302 KVYVGLSRMQRDWYKKILAKDIEAVNGAGKMEKMRLLNILMQLRKCCNHPYLFDGAEPGP 361

Query: 48  WKEVHDEKIKAL--------EVIIEKANAAPIIVAYHFNSDLARLQK----------AFP 89
                   I            +   +   + +++       L  L+              
Sbjct: 362 PFTTDQHLIDNCGKMLVLDKLLKKLQEQGSRVLIFSQMTRMLDILEDYCWWRNYNYCRID 421

Query: 90  QGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              + D     I E+N    +  +      + G G+NL    ++++ F   W+ +   Q 
Sbjct: 422 GSTSHDVRNEMIDEYNKENSEKFIFMLSTRAGGLGINL-ATADVVILFDSDWNPQMDLQA 480

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  R  + G K+ V ++ LI + T++E ++++   K  +  +++ 
Sbjct: 481 -----QDRAHRIGQKKQVRIFRLITEGTVEERIVEKAEMKLRLDAMVIQ 524


>gi|126322473|ref|XP_001379449.1| PREDICTED: similar to RAD54B protein [Monodelphis domestica]
          Length = 1087

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 22/171 (12%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
              + E    K++ L  ++    E + +  +++  ++   L  LQ               
Sbjct: 550 PNTFSETDSGKLQVLTKLLAAIRELSPSEKVVLVSNYTQTLNILQAVCTRHGYTCTRLDG 609

Query: 91  GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              + +    +  +N     + +      + G GLNL  GG+ L+ + + W+     Q +
Sbjct: 610 QTPVVQRQQIVDGFNCKHSSVFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAM 668

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R+      + G K +V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 669 ARVW-----RDGQKHSVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLAK 714


>gi|123468950|ref|XP_001317690.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900430|gb|EAY05467.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1439

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 67/226 (29%), Gaps = 38/226 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y     +   +L   +     +     +  ++  ++        + +       + +  
Sbjct: 581 LYRSLIEQKIPELAASDSSHRRALPELPNLAMQLRKVCCHPYLIQDYEKIIGDVLQGMSE 640

Query: 59  LEVIIEKAN---------------AAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            + +++ +                   I++   F   L  + +              G  
Sbjct: 641 FDQLVKCSGKMVFVDKLLGKLHPLGKKILIFSQFKHVLDIISQFLDMRNYKYERIDGGSH 700

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +     +  +N+    I +      + G GLNL    + ++ F   W+ +   Q   R 
Sbjct: 701 GNDRQKKMDRFNDPTQDIFVFLLSTRAGGLGLNLT-AADTVIIFDSDWNPQNDVQAQARC 759

Query: 152 GVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G     V VY LI + T +  +  R   K  +   +L+
Sbjct: 760 -----HRIGQTAEKVVVYRLITRGTYESEMFDRASKKLGLDQAVLD 800


>gi|115472329|ref|NP_001059763.1| Os07g0511500 [Oryza sativa Japonica Group]
 gi|113611299|dbj|BAF21677.1| Os07g0511500 [Oryza sativa Japonica Group]
          Length = 635

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI AL      ++E   +A  IV   F S L  ++ +  +             + + 
Sbjct: 462 TSTKIDALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEK 521

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  + N+    +      + G  LNL    + +     WW+     Q  +RI     
Sbjct: 522 GKAIDTFTNDPDCRIFLMSLKAGGVALNLTVASH-VFLMDPWWNPAVESQAQDRI----- 575

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + +     + ++T++E +LQ    K  + +
Sbjct: 576 HRIGQFKPIRSMRFVIKDTVEERILQLQEKKRLVFE 611


>gi|50509490|dbj|BAD31171.1| putative DNA repair protein rhp16 [Oryza sativa Japonica Group]
          Length = 569

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI AL      ++E   +A  IV   F S L  ++ +  +             + + 
Sbjct: 396 TSTKIDALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEK 455

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  + N+    +      + G  LNL    + +     WW+     Q  +RI     
Sbjct: 456 GKAIDTFTNDPDCRIFLMSLKAGGVALNLTVASH-VFLMDPWWNPAVESQAQDRI----- 509

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + +     + ++T++E +LQ    K  + +
Sbjct: 510 HRIGQFKPIRSMRFVIKDTVEERILQLQEKKRLVFE 545


>gi|327271091|ref|XP_003220321.1| PREDICTED: DNA repair and recombination protein RAD54-like [Anolis
           carolinensis]
          Length = 906

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
             K+  L+ I+      +N   ++V  ++   L   +K                ++ K  
Sbjct: 657 SGKMLVLDYILAVTKSTSNDKVVLV-SNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRA 715

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++ +N    P  +      + G GLNL  G N LV F   W+    +Q + R+     
Sbjct: 716 KVVEHFNSVSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW---- 770

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 771 -RDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVD 809


>gi|63991035|gb|AAY40920.1| unknown [Homo sapiens]
          Length = 367

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 143 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 202

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 203 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 262

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 263 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 321

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 322 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 366


>gi|194205835|ref|XP_001502330.2| PREDICTED: helicase, lymphoid-specific isoform 2 [Equus caballus]
          Length = 808

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  K     +++       L  L                  +  +    +  +N +
Sbjct: 577 MLPEL--KTRGHKVLLFSQMTRMLDILMDYCHFRDFNFSRLDGSMSYSEREKNMHNFNTD 634

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 635 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 688

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 689 VYRLVTANTIDQKIVERAAAKRKLEKLII 717


>gi|119489243|ref|XP_001262873.1| SNF2 family helicase/ATPase (Swr1), putative [Neosartorya fischeri
            NRRL 181]
 gi|119411031|gb|EAW20976.1| SNF2 family helicase/ATPase (Swr1), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1695

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1368 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1427

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I +      S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1428 TKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1486

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1487 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1527


>gi|254567481|ref|XP_002490851.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238030647|emb|CAY68571.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328351234|emb|CCA37634.1| DNA repair and recombination protein RAD54B [Pichia pastoris CBS
           7435]
          Length = 840

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNE--- 106
           L  + E  N   +IV  +F   L  LQ              G +  +D   ++++NE   
Sbjct: 548 LRKLFETTNEKCVIV-SNFTKTLDVLQLIIEHNNWKYHRLDGSSKGRD-KIVRDFNESPQ 605

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++     + G GLNL  G + L+ F   W+     Q + R+      + G KR  F
Sbjct: 606 KDRFIMLLSSKAGGVGLNL-IGASRLILFDNDWNPSVDIQAMARV-----HRDGQKRHTF 659

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +Y L  + TIDE +LQR   K  + D  L+
Sbjct: 660 IYRLYTKGTIDEKILQRQLMKQNLSDKFLD 689


>gi|159039139|ref|YP_001538392.1| non-specific serine/threonine protein kinase [Salinispora arenicola
            CNS-205]
 gi|157917974|gb|ABV99401.1| Non-specific serine/threonine protein kinase [Salinispora arenicola
            CNS-205]
          Length = 1074

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGEN-IEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              Y     ++   ++  + IE      +   +  Q+ N       +         K+  L
Sbjct: 843  ALYRAVVDDMLAQIESSDGIERRGLVLAAMTRLKQVCNHPAQLLRDGSALAGRSGKLARL 902

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEW 104
            E  +++  A     ++   + ++   + +     R               D+D    +  
Sbjct: 903  EETLDEVLAAGEKALLFTQY-AEFGGMLRGHLSARFGRETLFLHGGVGKADRDAMVTRFQ 961

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 PL      + G GL L    N +V    WW+     Q  +R       + G +R 
Sbjct: 962  ATDGPPLFVLSLKAGGTGLTLT-AANHVVHVDRWWNPAVEDQATDR-----AFRIGQQRR 1015

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   +   T++E V   +  K  +   ++
Sbjct: 1016 VQVRKFVCAGTVEEKVAALIADKRRLASTVV 1046


>gi|261404317|ref|YP_003240558.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261280780|gb|ACX62751.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 986

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 29/192 (15%)

Query: 27  SKTVK--CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
           +   K    +L  G    D E         K++ L  ++++        ++   +     
Sbjct: 779 ALLTKEPLPELPGGGGLLDTEAVVNR--SAKLERLLSMVKELRDEGERCLIFTQYIGMGE 836

Query: 83  RLQK----------AFPQGRTLDKDP-CTIQEWNEGKIP------LLFAHPASCGHGLNL 125
            +++           +  G T  +     I+++    +P      ++     + G GLNL
Sbjct: 837 MMRQVLHQELGEPVLYLNGSTPKRTRDRMIEQFQSQTLPPEEQPNVMILSIKAGGVGLNL 896

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N +  F  WW+     Q  +R       + G  + V VY  I+  T++E + + L 
Sbjct: 897 T-AANHVFHFDRWWNPAVENQATDR-----AYRMGQTKDVQVYKFISMGTLEERIDEMLE 950

Query: 186 TKSTIQDLLLNA 197
           +K  + D ++ +
Sbjct: 951 SKQQLSDQVIAS 962


>gi|115734945|ref|XP_001199537.1| PREDICTED: similar to HELLS protein, partial [Strongylocentrotus
           purpuratus]
 gi|115902055|ref|XP_792190.2| PREDICTED: similar to HELLS protein, partial [Strongylocentrotus
           purpuratus]
          Length = 132

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   F + L  L+                 +L+     ++E+N    + L      + 
Sbjct: 1   VLIFSQFTTMLDILEDFCHMRSHQYCRLDGTTSLEDRQERMKEFNSNPDVFLFLLSTRAG 60

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    + ++ +   W+ +   Q  +R       + G  + V +Y L+  NTID+ 
Sbjct: 61  GLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVVIYRLVTANTIDQR 114

Query: 180 VLQRLRTKSTIQDLLL 195
           +++R   K  ++ +++
Sbjct: 115 IVERAAAKRKLEKMVI 130


>gi|222637121|gb|EEE67253.1| hypothetical protein OsJ_24412 [Oryza sativa Japonica Group]
          Length = 953

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI AL      ++E   +A  IV   F S L  ++ +  +             + + 
Sbjct: 780 TSTKIDALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEK 839

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  + N+    +      + G  LNL    + +     WW+     Q  +RI     
Sbjct: 840 GKAIDTFTNDPDCRIFLMSLKAGGVALNLTVASH-VFLMDPWWNPAVESQAQDRI----- 893

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + +     + ++T++E +LQ    K  + +
Sbjct: 894 HRIGQFKPIRSMRFVIKDTVEERILQLQEKKRLVFE 929


>gi|296412613|ref|XP_002836017.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629817|emb|CAZ80174.1| unnamed protein product [Tuber melanosporum]
          Length = 591

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQ 90
           E          K+  LE ++    A    +++   F   L  +++               
Sbjct: 333 EPDERLVTVSGKMMLLERLVPALFARGHKVLIFSQFTKMLDIIEEWAVTLRHWPVCRIDG 392

Query: 91  GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G   +     I+ +N+ +   +      + G G+NL    + ++ F   W+ ++  Q   
Sbjct: 393 GIKQEDRREHIRRFNKDEGWNIFLLSTRAGGLGINLT-AADTVILFDSDWNPQQDLQA-- 449

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                R  + G K+ V +Y      T+++ +L++   K  ++ L++   K  ++
Sbjct: 450 ---QDRAHRIGQKKPVIIYRFATAATVEQTILEKADGKRRLEKLVIQKGKFRSV 500


>gi|109090004|ref|XP_001095698.1| PREDICTED: lymphoid-specific helicase isoform 13 [Macaca mulatta]
          Length = 837

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 594 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 653

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 654 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 707

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 708 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 746


>gi|194214970|ref|XP_001915028.1| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) [Equus caballus]
          Length = 910

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++    E   A  +++  ++   L  LQ+                 + 
Sbjct: 638 EEESGKLQVLSKLLAVIRELCPAEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPVS 697

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTK 797


>gi|293347259|ref|XP_001054095.2| PREDICTED: similar to RAD54B homolog isoform 1; RAD54, S.
           cerevisiae, homolog of, B [Rattus norvegicus]
          Length = 888

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRT-LD 95
           E    K++ L  ++   +       +I+  ++   L  L++         A   G+T + 
Sbjct: 618 ESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNLLEEVCKCHGYACARLDGQTPVS 677

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 678 QRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMARVW- 735

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G K  V VY L+   TI+E + QR  +K  +   +++  + 
Sbjct: 736 ----RDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRS 778


>gi|149045437|gb|EDL98437.1| similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog
           of, B (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 819

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRT-LD 95
           E    K++ L  ++   +       +I+  ++   L  L++         A   G+T + 
Sbjct: 549 ESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNLLEEVCKCHGYACARLDGQTPVS 608

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 609 QRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMARVW- 666

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G K  V VY L+   TI+E + QR  +K  +   +++  + 
Sbjct: 667 ----RDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRS 709


>gi|300795783|ref|NP_001178684.1| RAD54 homolog B [Rattus norvegicus]
          Length = 888

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRT-LD 95
           E    K++ L  ++   +       +I+  ++   L  L++         A   G+T + 
Sbjct: 618 ESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNLLEEVCKCHGYACARLDGQTPVS 677

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 678 QRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMARVW- 735

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G K  V VY L+   TI+E + QR  +K  +   +++  + 
Sbjct: 736 ----RDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRS 778


>gi|119173620|ref|XP_001239222.1| hypothetical protein CIMG_10244 [Coccidioides immitis RS]
          Length = 970

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 45  EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR----- 92
           EK W+     D+ ++ L  I    N    I+   F + L  L     ++ +   R     
Sbjct: 786 EKSWQTSSKIDKALEILREIESCNNGEKTIIFSQFTTLLDLLEVPIMREGWHYRRYDGSM 845

Query: 93  -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + ++   ++  +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 846 SPIQRNEAVLEFSDNENCKIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 903

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V V+ ++ ++T+++ +L+    K  + +  L+
Sbjct: 904 ----AHRIGQIRPVMVHRILVRDTVEDRILELQEKKRELIENALD 944


>gi|313226776|emb|CBY21921.1| unnamed protein product [Oikopleura dioica]
          Length = 1356

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQ 90
             E    +    K++ L  +I +    N    ++       L  L++              
Sbjct: 940  PETRLIQYDCGKLQTLHDLIYQKLRPNGHRALIFTQMTKMLDVLERFLSYHALTYSRLDG 999

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +K    ++ +N + KI  +     S G G+NL  G + ++F+   W+     Q   
Sbjct: 1000 STAPEKRIQIMETFNRDPKIFCMILSTRSGGVGVNLT-GADTVIFYDSDWNPTIDAQA-- 1056

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 R  + G  R V +Y  IA++TI+E +L++   K  + ++ + 
Sbjct: 1057 ---QDRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIE 1100


>gi|146418040|ref|XP_001484986.1| hypothetical protein PGUG_02715 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1155

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 27/163 (16%)

Query: 53   DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFP------------QGRTL-D 95
              KI+AL    + I E++    ++V   F+S L  ++                 GR    
Sbjct: 978  SSKIQALILHLQQIQEQSPGERVVVFSQFSSYLDLIENELKVQGSDIFHVVKFDGRLKMH 1037

Query: 96   KDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    I+ +N       + +L     + G GLNL    +       WW      Q I+RI
Sbjct: 1038 ERNQLIESFNNDDTSPRVSILLLSLKAGGVGLNLT-SASRAFMMDPWWSPSVEDQAIDRI 1096

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                  + G  R V V   I Q +I+E +L+    K  I + +
Sbjct: 1097 -----HRIGQVRNVKVTRFIIQESIEEKMLKIQERKKQIGEAV 1134


>gi|296120640|ref|YP_003628418.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296012980|gb|ADG66219.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 674

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 27/205 (13%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E    L   G++I   +     ++  Q+ N                 K   LE 
Sbjct: 446 YDTAEKEGVIQLNEMGDSISIQHVFELVLRLKQITNW--------DPLTGESAKFDRLEA 497

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------KDPCTIQEWNEGKIP 110
            +E+  A+    I+   +   L  L++   +   L          ++P   Q   +    
Sbjct: 498 DMEEVAASGGKAILFSQWTKTLDFLKEKLERFGPLVYHGGIPNKLREPVLKQFKEDPTKH 557

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++    A+   GLNLQ+ G  +  +  WW+     Q I R       + G K  V V   
Sbjct: 558 IILMSYATGAVGLNLQFAG-YVFLYDRWWNPAIEDQAINR-----AHRIGCKSQVIVTRF 611

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I+++TI+E + + L  K  +   +L
Sbjct: 612 ISKDTIEEKIDRVLTEKRELFRAIL 636


>gi|224143281|ref|XP_002324903.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222866337|gb|EEF03468.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1334

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
              K++ L  ++ +       +++   F   L  L+              G+    +   
Sbjct: 607 TSGKLQLLHKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWTYERIDGKVGGAERQI 666

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 667 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 720

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I
Sbjct: 721 RLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNI 766


>gi|168012162|ref|XP_001758771.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162689908|gb|EDQ76277.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1211

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 28/189 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPII 72
           L  E+I+A  + + ++       G V  DE+         KI  L  +++   A     +
Sbjct: 713 LDAEDIQAAEAMTHSLA------GMVQDDED---MSATSCKIDFLMALLDNLVAEGHRTL 763

Query: 73  VAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +       L  +Q    +            +  D++ C  +  ++ +IPL        G 
Sbjct: 764 IFAQTRKMLNIIQDEILERGWIFRRIDGTIKAADRELCVQEFQSDDEIPLFLLTSQVGGL 823

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GL L  G + +V     W+     Q ++R       + G K  V +Y L+   TI+E + 
Sbjct: 824 GLTLT-GADRVVIVDPAWNPSTDNQSVDR-----AYRIGQKNDVVIYRLMTCGTIEEKIY 877

Query: 182 QRLRTKSTI 190
           ++   K  +
Sbjct: 878 RKQVFKGHL 886


>gi|330864739|ref|NP_001178471.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Bos taurus]
          Length = 1051

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNIPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LN 196
           + 
Sbjct: 650 IQ 651


>gi|303324355|ref|XP_003072165.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111875|gb|EER30020.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037193|gb|EFW19131.1| SWI/SNF family DNA-dependent ATPase Ris1 [Coccidioides posadasii
           str. Silveira]
          Length = 988

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 45  EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR----- 92
           EK W+     D+ ++ L  I    N    I+   F + L  L     ++ +   R     
Sbjct: 804 EKSWQTSSKIDKALEILREIESCNNGEKTIIFSQFTTLLDLLEVPIMREGWHYRRYDGSM 863

Query: 93  -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + ++   ++  +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 864 SPIQRNEAVLEFSDNENCKIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 921

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V V+ ++ ++T+++ +L+    K  + +  L+
Sbjct: 922 ----AHRIGQIRPVMVHRILVRDTVEDRILELQEKKRELIENALD 962


>gi|149035611|gb|EDL90292.1| rCG50332, isoform CRA_c [Rattus norvegicus]
          Length = 568

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 307 SKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLV-SNYTQTLDLFEKLCRARRYLYVRLDG 365

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 366 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 424

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 425 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 467


>gi|297674406|ref|XP_002815220.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like,
           partial [Pongo abelii]
          Length = 816

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|297304754|ref|XP_002806437.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Macaca mulatta]
 gi|119632241|gb|EAX11836.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_d [Homo
           sapiens]
 gi|219520696|gb|AAI43955.1| SMARCA1 protein [Homo sapiens]
          Length = 1070

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|302308737|ref|NP_985767.2| AFR220Wp [Ashbya gossypii ATCC 10895]
 gi|299790770|gb|AAS53591.2| AFR220Wp [Ashbya gossypii ATCC 10895]
          Length = 1085

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 25   SASKTVKCLQL--ANGAV----YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +A ++   L+L   NG +    Y + +K  K V    I+ L+ + + +    ++V   F+
Sbjct: 881  AAVESRYLLKLEDINGKLEPVPYSNTKKSSKIV--ALIRHLKHLQDTSANEQVVVFSQFS 938

Query: 79   SDLARLQKAFPQ-------------GRT-LDKDPCTIQEWNEG---KIPLLFAHPASCGH 121
            S L  L+    Q             GR  L +    + ++ E    K+ +L     + G 
Sbjct: 939  SYLDILENELRQSFASDICEIYKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGV 998

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    +  +    WW      Q ++RI      + G    V +Y  I +N+I+E +L
Sbjct: 999  GLNLTCASHAFIM-DPWWSPGMEDQAMDRI-----HRIGQSNTVKIYRFIVENSIEEKML 1052

Query: 182  QRLRTKSTI 190
            +    K ++
Sbjct: 1053 RIQEKKRSL 1061


>gi|74692796|sp|Q753V5|RAD5_ASHGO RecName: Full=DNA repair protein RAD5
          Length = 1085

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 25   SASKTVKCLQL--ANGAV----YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +A ++   L+L   NG +    Y + +K  K V    I+ L+ + + +    ++V   F+
Sbjct: 881  AAVESRYLLKLEDINGKLEPVPYSNTKKSSKIV--ALIRHLKHLQDTSANEQVVVFSQFS 938

Query: 79   SDLARLQKAFPQ-------------GRT-LDKDPCTIQEWNEG---KIPLLFAHPASCGH 121
            S L  L+    Q             GR  L +    + ++ E    K+ +L     + G 
Sbjct: 939  SYLDILENELRQSFASDICEIYKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGV 998

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    +  +    WW      Q ++RI      + G    V +Y  I +N+I+E +L
Sbjct: 999  GLNLTCASHAFIM-DPWWSPGMEDQAMDRI-----HRIGQSNTVKIYRFIVENSIEEKML 1052

Query: 182  QRLRTKSTI 190
            +    K ++
Sbjct: 1053 RIQEKKRSL 1061


>gi|255555479|ref|XP_002518776.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
 gi|223542157|gb|EEF43701.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
          Length = 940

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           +  W E+   K+  L  ++    ++ +   ++V  ++   L    +              
Sbjct: 536 DGSWIEL-SGKMHVLARLLAHLRQRTDDRIVLV-SNYTQTLDLFAQLCRERRYPHLRLDG 593

Query: 91  GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    +  +N+      +      + G GLNL  GGN LV F   W+    +Q  
Sbjct: 594 ATSIGKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAA 652

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            RI      + G K+ V++Y  ++  TI+E V QR  +K  +Q ++
Sbjct: 653 ARIW-----RDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVI 693


>gi|154303896|ref|XP_001552354.1| hypothetical protein BC1G_08832 [Botryotinia fuckeliana B05.10]
 gi|150854416|gb|EDN29608.1| hypothetical protein BC1G_08832 [Botryotinia fuckeliana B05.10]
          Length = 612

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 68/170 (40%), Gaps = 23/170 (13%)

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGR------ 92
           K+W+     K      ++E  +      I+   F + L  LQ     K +   R      
Sbjct: 436 KNWQ--SSGKTDKCVELLEKFQNEGEKTIIFSQFVTFLDLLQVPIGEKGWKCERYDGSIN 493

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  +D    +  ++    ++     +   GLNL    + ++    +W+     Q ++R  
Sbjct: 494 SKRRDEAIKRFQDKPDCNIMLISLKAGNAGLNLT-AASRVIILDPFWNPFIEMQAVDR-- 550

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKK 200
                + G  + V V+ ++ Q T+++ +++  R K ++ +  L+  A+K 
Sbjct: 551 ---AYRIGQMKTVQVHRILVQETVEDRIMELQRQKKSLVESALDEGAMKS 597


>gi|119473011|ref|XP_001258467.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya
            fischeri NRRL 181]
 gi|119406619|gb|EAW16570.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1276

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 45   EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W      ++ ++ L+ I ++ ++   I+   F S L  L+          + +    
Sbjct: 1085 EKTWVTSAKIEKTLEILQEIQDREDSEKTIIFSQFTSLLDLLEVPIVRRGWGYRRYDGSM 1144

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R  D++   ++  +     ++     +   GLNL    + ++ F  +W+     Q I+R 
Sbjct: 1145 RPGDRNAAVLEFTDNPDCKIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEDQAIDR- 1202

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ Q T+++ +L+    K  + D  L+
Sbjct: 1203 ----AHRIGQMRQVHIHRILVQKTVEDRILELQEKKREVIDGALD 1243


>gi|190345413|gb|EDK37294.2| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWNEGK---IPLLFA 114
              +++  ++   L  L+++  +         G T +K+    + ++N+       +   
Sbjct: 614 GEKVVLVSNYTQTLKLLEQSVNKLNMKSLRLDGTTANKERDKLVNQFNKSSAESTMIFLL 673

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + L+ F   W+     Q + RI      + G KR VF+Y L+   
Sbjct: 674 SAKAGGVGLNL-VGASRLILFDNDWNPSVDLQAMARI-----HRDGQKRPVFIYRLLTTG 727

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
            IDE + QR   K+ + D  L+
Sbjct: 728 CIDEKIFQRQLMKNNLSDKFLD 749


>gi|73998070|ref|XP_859242.1| PREDICTED: similar to helicase, lymphoid-specific isoform 3 [Canis
           familiaris]
          Length = 386

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 242 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 299

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 300 PDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 353

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY L+  NTID+ +++R   K  ++ L+++  K
Sbjct: 354 VYRLVTANTIDQKIVERAAAKRKLEKLIIHKSK 386


>gi|296080908|emb|CBI18752.3| unnamed protein product [Vitis vinifera]
          Length = 1187

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 23/166 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFP----QG 91
            +D     +     KI+A   +++  +          IV   +   L  L+        Q 
Sbjct: 1000 HDPCPESRLYDSSKIRAALEVLQSLSKPRDLVGEKAIVFSQWTRMLDLLESCLKNSSIQY 1059

Query: 92   RTLDKD------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            R LD           ++++N   ++ ++     +   GLN+    ++L+   LWW+    
Sbjct: 1060 RRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL-DLWWNPTTE 1118

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             Q I+R       + G  R V V  L  ++T+++ +L   + K  +
Sbjct: 1119 DQAIDR-----AHRIGQTRPVTVLRLTVKDTVEDRILALQQKKREM 1159


>gi|119570423|gb|EAW50038.1| helicase, lymphoid-specific, isoform CRA_m [Homo sapiens]
          Length = 874

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 59/149 (39%), Gaps = 18/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  + ++ +   +++     S L  L                  +  +    +  +N +
Sbjct: 607 MLPELKKRGHKV-VLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTD 665

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 666 PEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 719

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 720 VYRLVTANTIDQKIVERAAAKRKLEKLII 748


>gi|296226943|ref|XP_002759149.1| PREDICTED: DNA repair and recombination protein RAD54B [Callithrix
           jacchus]
          Length = 910

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 639 EKESGKLQVLSKLLAVIHELRPTERVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 698

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N     + +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 699 QRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 757 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 798


>gi|156545712|ref|XP_001604847.1| PREDICTED: similar to PASG [Nasonia vitripennis]
          Length = 1193

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 13  CDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NA 68
             L G ++  +         +   L +   Y  +E   K     KI  L+ +++K   N 
Sbjct: 587 LKLSGNDVTMYRHVVNHPYLIHYPLTDAGDYKVDENIIK--ASGKILVLDALLKKLYKNG 644

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117
             +++       L  ++                   D    +I  +    ++ L      
Sbjct: 645 HKVLLFSTMTMVLDVIEDYLSLRGFKYVRLDGAVAYDDRKDSIDSFQKNPEVFLFLLTTK 704

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNL    + ++ +   W+ +   Q + R       + G  + V VY L  + T+D
Sbjct: 705 AGAVGLNL-AAADTVIIYDSDWNPQNDLQAMARC-----HRIGQTKPVAVYRLCTKGTVD 758

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +++R   K  ++  +++
Sbjct: 759 EAIIKRANAKRFLEKAVIS 777


>gi|322492128|emb|CBZ27402.1| DNA repair and recombination protein RAD54,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1130

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEG 107
            L+ +        +++  +F   L  +                   + K    +  +N  
Sbjct: 806 VLDELKRNGEHDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVP 865

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 866 GSQEVVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKRV 919

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  TI+E + QR  +K  +   +++
Sbjct: 920 FIYRLLSTGTIEEKIYQRQVSKQGLSANVVD 950


>gi|296236368|ref|XP_002807959.1| PREDICTED: LOW QUALITY PROTEIN: probable global transcription
           activator SNF2L1-like [Callithrix jacchus]
          Length = 1080

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFRGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|290457487|emb|CBK19482.1| C. elegans protein Y116A8C.13b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 720

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 21/161 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDP-----CT 100
             K+ AL  +I+  +      ++  ++   L  +Q+      F   R   K         
Sbjct: 403 SGKLTALVDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKL 462

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N+ + P  +      + G GLNL  G + LV F   W+    QQ + RI      +
Sbjct: 463 VRTFNDHRDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----R 516

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 517 DGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 556


>gi|71995707|ref|NP_503012.2| hypothetical protein Y116A8C.13 [Caenorhabditis elegans]
 gi|34556097|emb|CAB55149.2| C. elegans protein Y116A8C.13a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 833

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 21/161 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDP-----CT 100
             K+ AL  +I+  +      ++  ++   L  +Q+      F   R   K         
Sbjct: 516 SGKLTALVDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKL 575

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N+ + P  +      + G GLNL  G + LV F   W+    QQ + RI      +
Sbjct: 576 VRTFNDHRDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----R 629

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 630 DGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 669


>gi|83767491|dbj|BAE57630.1| unnamed protein product [Aspergillus oryzae]
          Length = 1103

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W  V   KI+    I+   +      I+   F S L  L+          + +    
Sbjct: 912  EKTW--VSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRRYDGSM 969

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 970  KPGDRNSAVLDFTDSPDCKIILVSLKAGNSGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1027

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ QNT+++ +L+    K  + +  L+
Sbjct: 1028 ----AHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALD 1068


>gi|119570411|gb|EAW50026.1| helicase, lymphoid-specific, isoform CRA_a [Homo sapiens]
          Length = 870

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 59/149 (39%), Gaps = 18/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  + ++ +   +++     S L  L                  +  +    +  +N +
Sbjct: 607 MLPELKKRGHKV-VLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTD 665

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 666 PEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 719

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 720 VYRLVTANTIDQKIVERAAAKRKLEKLII 748


>gi|300794189|ref|NP_001179884.1| RAD54 homolog B [Bos taurus]
 gi|297482525|ref|XP_002692864.1| PREDICTED: RAD54 homolog B (S. cerevisiae) [Bos taurus]
 gi|296480441|gb|DAA22556.1| RAD54 homolog B [Bos taurus]
          Length = 909

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++    E   A  +++  ++   L  LQ+                 + 
Sbjct: 638 EEESGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPIS 697

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSK 797


>gi|73999360|ref|XP_850491.1| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) isoform 8 [Canis familiaris]
          Length = 912

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 639 EEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQTPVS 698

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 699 QRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  +
Sbjct: 757 ----RDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTR 798


>gi|73999362|ref|XP_544181.2| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) isoform 7 [Canis familiaris]
          Length = 892

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 619 EEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQTPVS 678

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 679 QRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 736

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  +
Sbjct: 737 ----RDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTR 778


>gi|31874139|emb|CAD97978.1| hypothetical protein [Homo sapiens]
 gi|190689855|gb|ACE86702.1| helicase, lymphoid-specific protein [synthetic construct]
 gi|190691223|gb|ACE87386.1| helicase, lymphoid-specific protein [synthetic construct]
          Length = 822

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 579 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLNGSMSYSER 638

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 639 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 692

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 693 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 731


>gi|238492801|ref|XP_002377637.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
           NRRL3357]
 gi|220696131|gb|EED52473.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
           NRRL3357]
          Length = 1076

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  LQK                  +     
Sbjct: 632 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQS 691

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 692 MVDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 745

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 746 LGQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 788


>gi|159470413|ref|XP_001693354.1| hypothetical protein CHLREDRAFT_117345 [Chlamydomonas reinhardtii]
 gi|158277612|gb|EDP03380.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 526

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 22/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
               +  H  K+  LE+++    +  +   +++  ++   L  L+               
Sbjct: 305 PGSCQAYHSGKVAVLEMMLKAVRDSGSGDKVVLVSNYTEALDILEGMCRAHAWAFLRLDG 364

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G  + K    +  +N+   P  LL     + G GLN+  G N LV F   W+     Q +
Sbjct: 365 GCDVKKRQPLVDCFNDPAHPSFLLLLSSKAGGVGLNI-IGANRLVLFDPDWNPANDLQAM 423

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+ V++Y L+   +I+E V QR   K  +   +++
Sbjct: 424 ARVW-----RQGQKKKVWIYRLLTTGSIEEKVYQRQVAKQGLSAAIVD 466


>gi|109090020|ref|XP_001094924.1| PREDICTED: lymphoid-specific helicase isoform 6 [Macaca mulatta]
          Length = 821

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 578 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 637

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 638 EKNMHSFNMDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 691

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 692 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 730


>gi|311276917|ref|XP_003135410.1| PREDICTED: probable global transcription activator SNF2L1 [Sus
           scrofa]
          Length = 1073

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 90  QGRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LN 196
           + 
Sbjct: 650 IQ 651


>gi|156369786|ref|XP_001628155.1| predicted protein [Nematostella vectensis]
 gi|156215124|gb|EDO36092.1| predicted protein [Nematostella vectensis]
          Length = 756

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 29/176 (16%)

Query: 44  EEKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQGR-------- 92
           + K+ +     K++ L+ I+   +  +   +++  ++   L   +K   Q R        
Sbjct: 491 DLKNVQPELSGKMQVLDYILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDG 550

Query: 93  --TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    +  +N+ K    +      + G GLNL  G N LV F   W+     Q +
Sbjct: 551 SMSIKKRQKIVDRFNDPKGGDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAM 609

Query: 149 ERIGVTRQRQAGFKRA--------VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+         VF+Y L++  TI+E + QR   K  +   +++
Sbjct: 610 ARVW-----RDGQKKKAIFDLLLQVFIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 660


>gi|156095999|ref|XP_001614034.1| DNA repair protein rhp16 [Plasmodium vivax SaI-1]
 gi|148802908|gb|EDL44307.1| DNA repair protein rhp16, putative [Plasmodium vivax]
          Length = 1589

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 24/169 (14%)

Query: 52   HDEKIKA-LEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
               KI+A  E I  + K      ++   + S L  ++    +   +              
Sbjct: 1417 TSTKIEAVFEEIQNVMKTTDDKCLIFSQYCSMLDLIEYHLKKHNIICSKLLGYMSMVSRN 1476

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +NE K + +L     + G GLNLQ   N +     WW+     Q I+R       
Sbjct: 1477 NILYSFNEDKHLRVLLISLKAGGEGLNLQV-ANRIFIVDPWWNPAAELQAIQR-----AH 1530

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
            + G  + V+    I +NT++E ++Q    K  + D  +    NA++K T
Sbjct: 1531 RIGQTKTVYATRFIIENTVEEKIVQLQNKKQLVFDCTIGDSGNAMQKLT 1579


>gi|195117078|ref|XP_002003076.1| GI24344 [Drosophila mojavensis]
 gi|193913651|gb|EDW12518.1| GI24344 [Drosophila mojavensis]
          Length = 843

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------RLQKA----FPQGRTLDKDPCT 100
             K + L+ ++ K  A    +++   F   L       R++K           + +    
Sbjct: 650 SGKFQYLDTLLPKLKAEGHRVLLFSQFTMMLDVVEQYLRIRKHGFCRLDGATAVKERQDL 709

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++N +  I +      + G G+NL      ++   + ++    +Q  +R       + 
Sbjct: 710 ITDFNVDDNIFVFLLSTKAGGVGINLTAADTCIIH-DIDFNPYNDKQAEDRC-----HRM 763

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G  R V +Y LI++NTI+E +L     K  ++  + +  K E 
Sbjct: 764 GQNRPVTIYRLISENTIEEGILMAAEEKLKLEKDITSTEKGEV 806


>gi|170580649|ref|XP_001895355.1| recombination factor GdRad54 [Brugia malayi]
 gi|158597754|gb|EDP35808.1| recombination factor GdRad54, putative [Brugia malayi]
          Length = 865

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 23/176 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
            K ++     K+K L+ ++       N   ++V  ++   +         + +P  R   
Sbjct: 588 GKKFEPAFSGKMKVLDYLLAATRATTNDKFVLV-SNYTQTIDAFVELCQLRRYPYIRLDG 646

Query: 93  --TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ +    ++++N+ +    +      + G GLNL  G N L+ F   W+     Q +
Sbjct: 647 TCTIKQRAKLVEKFNDPESVEYVFLLSSKAGGCGLNL-IGANRLIMFDPDWNPANDDQAM 705

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R+      + G K+  F+Y L++  +I+E + QR   K  +   +++ +     H
Sbjct: 706 ARVW-----RDGQKKNCFIYRLLSTGSIEEKMFQRQAHKKALSSCVVDEISDVARH 756


>gi|313213982|emb|CBY40778.1| unnamed protein product [Oikopleura dioica]
          Length = 867

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQ 90
            E    +    K++ L  +I +    N    ++       L  L++              
Sbjct: 451 PETRLIQYDCGKLQTLHDLIYQKLRPNGHRALIFTQMTKMLDVLERFLSYHALTYSRLDG 510

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +K    ++ +N + KI  +     S G G+NL  G + ++F+   W+     Q   
Sbjct: 511 STAPEKRIQIMETFNRDPKIFCMILSTRSGGVGVNLT-GADTVIFYDSDWNPTIDAQA-- 567

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  IA++TI+E +L++   K  + ++ + 
Sbjct: 568 ---QDRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIE 611


>gi|312071167|ref|XP_003138483.1| hypothetical protein LOAG_02898 [Loa loa]
 gi|307766356|gb|EFO25590.1| hypothetical protein LOAG_02898 [Loa loa]
          Length = 755

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 23/176 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
            + ++     K+K L+ ++       N   ++V  ++   +         + +P  R   
Sbjct: 478 GRKFEPAFSGKMKVLDYLLAATRTTTNDKFVLV-SNYTQTIDAFVELCQLRRYPYIRLDG 536

Query: 93  --TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ +    ++++N+ K    +      + G GLNL  G N L+ F   W+     Q +
Sbjct: 537 TCTIKQRAKLVEKFNDPKSVEYVFLLSSKAGGCGLNL-IGANRLIMFDPDWNPANDDQAM 595

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R+      + G ++  F+Y L+A  +I+E + QR   K  +   +++       H
Sbjct: 596 ARVW-----RDGQRKNCFIYRLLASGSIEEKMFQRQAHKKALSSCVIDEASDVARH 646


>gi|209878917|ref|XP_002140899.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209556505|gb|EEA06550.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1321

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 52   HDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
               KI AL   I +       A  I+   F + L  +     +            T+ + 
Sbjct: 1148 SSTKINALLDEINQMILSDPDAKGIIFSQFTNMLDLVMYKLKKSNIDCALLAGSMTMIQR 1207

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N+   + LL     + G GLNLQ   N +     WW+     Q        R 
Sbjct: 1208 NSILYSFNKFPDLKLLLISLKAGGEGLNLQV-ANYVFLLDPWWNPAVELQA-----FQRA 1261

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V     I ++TI+E ++Q    K  + D  + A
Sbjct: 1262 HRIGQTKPVTAIRFIIKDTIEERMIQLQEKKQLVFDGTVGA 1302


>gi|50549907|ref|XP_502425.1| YALI0D04961p [Yarrowia lipolytica]
 gi|74689630|sp|Q6CA87|SWR1_YARLI RecName: Full=Helicase SWR1
 gi|49648293|emb|CAG80613.1| YALI0D04961p [Yarrowia lipolytica]
          Length = 1772

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ L  +++   A     ++       L  L++               
Sbjct: 1459 PDKRLLQYDCGKLQRLATLLQDLIAGGHRALIFTQMTKVLDVLEQFLNIHGLRYMRLDGA 1518

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++     + +N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1519 TKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPSMDKQCQDR 1577

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1578 C-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVIQ 1618


>gi|320587640|gb|EFX00115.1| tbp associated factor [Grosmannia clavigera kw1407]
          Length = 1928

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 31/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y + QR    + QG +IE  N A K      L        E                 
Sbjct: 1645 RMYDETQR--LLERQGSSIEDPNHAPKLTALRDLLVDCGIGVEGDGDGSDP--------- 1693

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
            + +       ++       L  +Q                      ++    +  +N + 
Sbjct: 1694 LYQPIKPHRALIFCQMKEMLDMVQNTVLKSMLPSVSYLRLDGSVEANRRQDIVNRFNKDP 1753

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L       G GLNL  G + ++F    W+ +   Q ++R       + G K+ V V
Sbjct: 1754 SYDVLLLTTNVGGLGLNLT-GADTVIFVEHDWNPQRDLQAMDR-----AHRIGQKKVVNV 1807

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1808 YRLITRGTLEEKILSLQRFKIDVASTVVN 1836


>gi|225562568|gb|EEH10847.1| helicase swr1 [Ajellomyces capsulatus G186AR]
          Length = 1674

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1338 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1397

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1398 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1456

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  I++ TI+  +L++   K  + D+++ 
Sbjct: 1457 C-----HRIGQTRDVHIYRFISEYTIESNILRKANQKRMLDDVIIQ 1497


>gi|167521471|ref|XP_001745074.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776688|gb|EDQ90307.1| predicted protein [Monosiga brevicollis MX1]
          Length = 827

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
            DE           +  L+++ E A   P +          RLQ + P  + L      +
Sbjct: 569 TDERALLVSNSTRCLDILQLLCE-AEGWPFL----------RLQGSTPTHQRL----EMV 613

Query: 102 QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G GLN+  G + LV F   W+     Q + RI      + 
Sbjct: 614 NRFNARHHDDFVFLMSSKAGGVGLNI-VGASRLVLFDTDWNPSHDLQAMARIW-----RE 667

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  R VF+Y L+A  TI+E + QR   KS +   ++   + E
Sbjct: 668 GQTRPVFIYRLVATGTIEEKIYQRQIVKSALGTTVMEDKETE 709


>gi|115390074|ref|XP_001212542.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194938|gb|EAU36638.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1205

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 79/204 (38%), Gaps = 34/204 (16%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +L+ E   + N  SK     +L         EK W  V   KI+    I++   
Sbjct: 997  KKKTLAELKKEA--SKNIKSKRKYLRRL---------EKTW--VTSAKIEKTLEILDGIR 1043

Query: 66   --ANAAPIIVAYHFNSDLARLQ----------KAFPQG-RTLDKDPCTIQEWNEGKIPLL 112
                    I+   F S L  L+          + +    +  D++   +   ++    ++
Sbjct: 1044 QGEGNEKTIIFSQFTSLLDLLEVPISRRGWNYRRYDGSMKPQDRNASVLDFTDDPDCRIM 1103

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +   GLNL    + ++ F  +W+    +Q I+R       + G  R V ++ ++ 
Sbjct: 1104 LVSLKAGNSGLNL-VAASQVIIFDPFWNPYIEEQAIDR-----AHRIGQMREVQIHRILV 1157

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
             NT+++ +L+    K  + +  L+
Sbjct: 1158 PNTVEDRILELQDKKRELIEGALD 1181


>gi|71020091|ref|XP_760276.1| hypothetical protein UM04129.1 [Ustilago maydis 521]
 gi|46099924|gb|EAK85157.1| hypothetical protein UM04129.1 [Ustilago maydis 521]
          Length = 983

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---KAFPQGRT--------LDKDP 98
              K+  L  ++++       +++   F + L  ++     F + RT         D+  
Sbjct: 711 ASGKMLMLNRLLDELFHRGHKVLIFSQFTTMLDIIEDWANEFKRLRTCRIDGTTPQDERR 770

Query: 99  CTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++ +NE K      L      + G G+NL    + ++F+   W+ +   Q  +R+   
Sbjct: 771 AQMKSFNEDKGRDACNLFLLSTRAGGLGINL-VAADTVIFYDSDWNPQMDLQAQDRV--- 826

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G  R   ++ L++ +T++E +L+R   K  ++ L++   K
Sbjct: 827 --HRIGQTRPCLIFRLVSASTVEERILRRAGNKRKLEALVIQQGK 869


>gi|325092504|gb|EGC45814.1| helicase swr1 [Ajellomyces capsulatus H88]
          Length = 1674

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1338 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1397

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1398 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1456

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  I++ TI+  +L++   K  + D+++ 
Sbjct: 1457 C-----HRIGQTRDVHIYRFISEYTIESNILRKANQKRMLDDVIIQ 1497


>gi|300933599|ref|ZP_07148855.1| putative DNA/RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 1052

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 27/209 (12%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIK 57
            Y  +  ++   L+        N     V+  Q+ N   ++  +        E    K+K
Sbjct: 793 LYKAYIDDIEQRLRDRSQDRRGNILGALVRIKQICNHPAHFAGDGSALLKEGEHRSGKVK 852

Query: 58  ALEVIIEKA--NAAPIIVAYHF-------NSDLARLQK----AFPQGRTLDKDPCTIQEW 104
               I+E+A       ++   F         +L R+          G    K    ++++
Sbjct: 853 RAFEILEQAQREGRKALIFTQFPTFGTMLLPELERIFGQPIPMLHGGVPRKKRADMVRQF 912

Query: 105 N-EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              G+   P +     + G G+ L    +++V    WW+     Q  +R       + G 
Sbjct: 913 QLPGEQGPPAMVLSVRAGGTGITLTE-ASVVVHIDRWWNPAVEDQATDR-----AYRIGQ 966

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R V VY L+A+ T+DE +   +++K  +
Sbjct: 967 NRDVTVYKLVAEGTLDERINDIIQSKREL 995


>gi|289619716|emb|CBI53999.1| unnamed protein product [Sordaria macrospora]
          Length = 861

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
              +++   F + L  L+                G   D     I+++N +  + +    
Sbjct: 635 GHKVLIFSQFKTQLDILEDYCRELRSWDICRIDGGVAQDDRRAQIEQFNTDPAVKIFLLS 694

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++  Q  +R       + G  R V VY L  + T
Sbjct: 695 TRAGGQGINL-ASADTVILFDSDWNPQQDLQAQDRC-----HRIGQTRPVVVYRLATKGT 748

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 749 VEEELLMSADAKRRLEKLVI 768


>gi|270009357|gb|EFA05805.1| hypothetical protein TcasGA2_TC030720 [Tribolium castaneum]
          Length = 729

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
           L  +    N   ++V  ++   L   +K                ++ K    +  +N+ +
Sbjct: 468 LANLKNNYNDKVVLV-SNYTQTLDLFEKLCRKRGYRYVRLDGTMSIKKRAKVVANFNDPE 526

Query: 109 --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GLNL  G N L+ F   W+     Q + R+      + G ++  +
Sbjct: 527 SGEFIFMLSSKAGGCGLNL-IGANRLIMFDPDWNPANDDQAMARVW-----RDGQQKPCY 580

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +Y  +A  TI+E + QR   K  +   +++  ++   H
Sbjct: 581 IYRFLAAGTIEEKIFQRQAHKKALSSTVVDNNEETARH 618


>gi|189238349|ref|XP_967988.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
           protein [Tribolium castaneum]
          Length = 713

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
           L  +    N   ++V  ++   L   +K                ++ K    +  +N+ +
Sbjct: 452 LANLKNNYNDKVVLV-SNYTQTLDLFEKLCRKRGYRYVRLDGTMSIKKRAKVVANFNDPE 510

Query: 109 --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GLNL  G N L+ F   W+     Q + R+      + G ++  +
Sbjct: 511 SGEFIFMLSSKAGGCGLNL-IGANRLIMFDPDWNPANDDQAMARVW-----RDGQQKPCY 564

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +Y  +A  TI+E + QR   K  +   +++  ++   H
Sbjct: 565 IYRFLAAGTIEEKIFQRQAHKKALSSTVVDNNEETARH 602


>gi|240281002|gb|EER44505.1| helicase swr1 [Ajellomyces capsulatus H143]
          Length = 1674

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1338 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1397

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1398 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1456

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  I++ TI+  +L++   K  + D+++ 
Sbjct: 1457 C-----HRIGQTRDVHIYRFISEYTIESNILRKANQKRMLDDVIIQ 1497


>gi|328872835|gb|EGG21202.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1993

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 27/217 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA-VYYDEE---KHWKEVHDE 54
            K Y   + +    L  E      +       +QL    N   ++YDEE     +      
Sbjct: 1245 KMYQLIRSKSVNKLNQEEGAPRLARGLKNTLVQLRKVCNHPYLFYDEEYAIDEYMIRSAG 1304

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQ 102
            K   L+ I+ K  A+   +++       +  L+  F           G T  ++    + 
Sbjct: 1305 KFDLLDKILPKLKASGHRVLIFSQMTHLIDILEHYFTYKGYKYLRLDGSTKSEERGPMLN 1364

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N     + +      + G GLNLQ   + ++ F   W+ +   Q        R  + G
Sbjct: 1365 LFNAPGSDLFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDLQA-----QDRAHRIG 1418

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L+  N+++E +L R   K  +   ++ A
Sbjct: 1419 QKQTVKVLRLVTVNSVEEKILARAIFKKELDKKIIQA 1455


>gi|303277253|ref|XP_003057920.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460577|gb|EEH57871.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 945

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTLDK------------- 96
              K+  L  ++          +V   F S L  +  A        K             
Sbjct: 643 FSGKLAVLLTMLRATTPGVDKTVVVSGFTSTLDLIAAALSAAGVGGKVSSRLDGSVAPNL 702

Query: 97  DPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+GK   +      + G GLNL  G N LV F   W+     Q + R+    
Sbjct: 703 RGAIVNKFNDGKGGDVFLLSCKAGGVGLNL-VGANRLVLFDSDWNPANDLQALARVW--- 758

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
             + G KR V +Y L++  T++E V QR   K  + D + + ++ K 
Sbjct: 759 --REGQKRPVTIYRLVSTGTVEERVFQRQILKGDVADAMGMASVNKR 803


>gi|165971312|gb|AAI58841.1| Rad54l protein [Rattus norvegicus]
          Length = 470

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            K  +     K+  L+ I+     +++   ++V  ++   L   +K              
Sbjct: 209 SKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLV-SNYTQTLDLFEKLCRARRYLYVRLDG 267

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    +Q +
Sbjct: 268 TMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAM 326

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 327 ARVW-----RDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVD 369


>gi|268531852|ref|XP_002631054.1| C. briggsae CBR-BTF-1 protein [Caenorhabditis briggsae]
          Length = 1510

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 23   FNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             + + K     QL     +  + ++      DE    L  + E       ++   + +  
Sbjct: 1254 TSKSGKMEALKQLLIECEICKNPDEEVAAEADE----LGGLNEVGQGHRALIFCQWKTSA 1309

Query: 82   ARLQKAFPQGR--------------TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQ 126
              + +A   G                +      +  +NE K I +L       G GLNL 
Sbjct: 1310 QLVSEALRSGEFGSVVSHLVLDGNVPVGDRMKMVNRFNEDKTIEVLILTTHVGGVGLNLT 1369

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+  +  Q I+R       + G  R V VY LI Q T++E V+   + 
Sbjct: 1370 -GADTVIFMDHDWNPMKDLQAIDR-----AHRLGQTRNVNVYRLITQGTVEEKVMSLAKF 1423

Query: 187  KSTIQDLLLNA 197
            K      L+ A
Sbjct: 1424 KLNTAQALIGA 1434


>gi|146419519|ref|XP_001485721.1| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 19/142 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-CTIQEWN---EGKIPLLFA 114
              +++  ++   L  L+++  +         G T +K+    + ++N        +   
Sbjct: 614 GEKVVLVSNYTQTLKLLEQSVNKLNMKSLRLDGTTANKERDKLVNQFNKLSAESTMIFLL 673

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G + L+ F   W+     Q + RI      + G KR VF+Y L+   
Sbjct: 674 SAKAGGVGLNL-VGASRLILFDNDWNPSVDLQAMARI-----HRDGQKRPVFIYRLLTTG 727

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
            IDE + QR   K+ + D  L+
Sbjct: 728 CIDEKIFQRQLMKNNLSDKFLD 749


>gi|168061453|ref|XP_001782703.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162665796|gb|EDQ52468.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2113

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 38/226 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y +  R       G       S +  +  L++     Y    K  +            
Sbjct: 1141 KNYKQLNR-------GNTTGKKRSLNFILMDLKMVCNHPYLFPGKEPEHGDADELFRLLI 1193

Query: 53   --DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
                K++ L  ++ +       +++     S L  L+                       
Sbjct: 1194 TASGKLQVLAKLLPRLKEGGHRVLLFSQMKSMLDILEDFLSHLDYKFCRIDGSTPASGRQ 1253

Query: 99   CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I ++N     + +      + G G+NL    + ++ +   ++     Q   R      
Sbjct: 1254 KQIADFNSANSDVFIFLISTRAGGLGINL-PSADTVIIYDPDFNPFVDLQAQAR-----A 1307

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + G +  V VY LI + +++E + +R R K  +++L++++ +K+T
Sbjct: 1308 HRIGQRNVVLVYQLITKCSVEEKITERSRQKLAMENLVMSSSEKDT 1353


>gi|194041750|ref|XP_001929005.1| PREDICTED: lymphoid-specific helicase [Sus scrofa]
          Length = 837

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++       L  L                  +  + 
Sbjct: 594 VTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTER 653

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N +  + +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 654 EKNMHSFNTDPDVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 707

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 708 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 746


>gi|294659015|ref|XP_002770883.1| DEHA2F23188p [Debaryomyces hansenii CBS767]
 gi|218511864|sp|Q6BKC2|SWR1_DEBHA RecName: Full=Helicase SWR1
 gi|202953552|emb|CAR66400.1| DEHA2F23188p [Debaryomyces hansenii]
          Length = 1616

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++   AN    ++       L  L++             G 
Sbjct: 1322 PDKSLLQFDCGKLQKLATLLQDLTANGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1381

Query: 93   TLDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N   KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1382 TKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1440

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 1441 C-----HRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQ 1481


>gi|321476094|gb|EFX87055.1| RAD54B meiotic recombination protein [Daphnia pulex]
          Length = 1001

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 59  LEVIIEKANAAPIIVAYH------FNSDLARLQKAF---PQGRTLDKDPCTIQEWNE--G 107
           L+ +++      I+V+Y       F       + +F         +     +  +N+  G
Sbjct: 773 LDSLMKNTKEKIILVSYSTKMLDLFGESCTERKYSFVRLDGSTPTNTRMGIVDRFNDPQG 832

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G + L+ + + W+     Q + RI      + G KR V +
Sbjct: 833 ADRVFLLSSKAGGVGLNL-IGASRLILYDIDWNPANDMQAMARIW-----REGQKRTVQI 886

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+   TI+E + QR   K  +   +++A
Sbjct: 887 YRLLTTGTIEEKIFQRQILKQGLSGAIVDA 916


>gi|296809533|ref|XP_002845105.1| helicase [Arthroderma otae CBS 113480]
 gi|238844588|gb|EEQ34250.1| helicase [Arthroderma otae CBS 113480]
          Length = 869

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    +++   F   L  L+    Q R              D+         +    +  
Sbjct: 639 SKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNQDPDYRIFL 698

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 699 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 752

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+++ +L+R  +K  ++ L++   K
Sbjct: 753 GTVEQTLLERAGSKRRLEKLVIQKGK 778


>gi|237836947|ref|XP_002367771.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965435|gb|EEB00631.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221482002|gb|EEE20368.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
 gi|221505079|gb|EEE30733.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii VEG]
          Length = 693

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 20/166 (12%)

Query: 54  EKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-T 100
            K++ LE +   I  ++   I++  +F S L  ++              G T  KD    
Sbjct: 521 TKLQFLENLLLSIRSSSNDKIVIVSNFTSTLDNIEIFMQAKGYSFLRLDGSTAVKDRTGL 580

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++ +NE K          + G GLNL  G N LV     W+    QQ + R+      + 
Sbjct: 581 VKTFNESKECFAFLLSSKAGGVGLNL-IGANRLVLLDPDWNPANDQQALARVW-----RP 634

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G    V++Y L+   TI+E +LQR   K+T+  + +     +  H+
Sbjct: 635 GQINPVYIYRLVGARTIEEKILQRQAYKATLAQVGVVGSDFQMAHI 680


>gi|55771379|dbj|BAD72546.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
 gi|55773904|dbj|BAD72509.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
          Length = 1354

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y    R       G ++   N     ++  +L   A   DE +      +   + LE 
Sbjct: 549 KNYEVLTRR-----SGGHVSLINV---VMELRKLCCHAFMTDEPEEPANSEEALRRLLES 600

Query: 61  ----VIIEKA------NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
                +++K           +++   F   L  L+              G+    +    
Sbjct: 601 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 660

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+     Q + R       +
Sbjct: 661 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AHR 714

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K T
Sbjct: 715 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGT 758


>gi|326381489|ref|ZP_08203183.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199736|gb|EGD56916.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 965

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 28/193 (14%)

Query: 24  NSASKTVKCLQLANG-AVYYDEE-------KHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
              +   +  Q+ N  A Y+D+        +H     +  +  L  +I  A     +V  
Sbjct: 754 TVLAALTRLKQICNHPAHYFDDGSGMLRRGRHRSGKVELLVDVLTTLI--AEGDRALVFT 811

Query: 76  HFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
            F +    L                 G + D+    +  ++     P+L A   + G GL
Sbjct: 812 QFAAFAELLSGWLEPVLGTAVPVLHGGSSRDQRDAMVARFSSPDGPPVLIATLKAGGTGL 871

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           N+    N ++    WW+     Q  +R       + G  R V V   +   T++E + + 
Sbjct: 872 NM-VAANHVIHADRWWNPAVEDQATDR-----AYRIGQTRNVQVRKFVCVGTLEERIDEM 925

Query: 184 LRTKSTIQDLLLN 196
           + +K  +  L L+
Sbjct: 926 VASKRELSRLTLS 938


>gi|254570913|ref|XP_002492566.1| DNA helicase [Pichia pastoris GS115]
 gi|238032364|emb|CAY70387.1| DNA helicase [Pichia pastoris GS115]
          Length = 1103

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAP 70
            Q   +   N  SK  K        V   E  +   +        KI AL   ++  +   
Sbjct: 886  QENEVLCPNCRSKISKLRLFKTHLVEDSERGYSVTLFHPYGSSSKINALLRHLKTIHETK 945

Query: 71   --IIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN----EGKIPLL 112
              ++V   F+S L  +Q    + +             L +    ++E+N     G I +L
Sbjct: 946  EHVVVISQFSSFLDLIQAELSKYKKEFKVMKFDGQLSLSERQVVLKEFNDNPENGGINVL 1005

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +       WW      Q I+R+      + G  + V V   I 
Sbjct: 1006 LLSLKAGGVGLNLTN-ASRAFMMDPWWSPSVEAQAIDRL-----HRIGQSKNVNVVRFIM 1059

Query: 173  QNTIDELVLQRLRTKSTIQDLL 194
            + +I+E +L+    K  + + +
Sbjct: 1060 EGSIEEKMLKVQERKKQLGEAV 1081


>gi|219123447|ref|XP_002182036.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406637|gb|EEC46576.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 545

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 19/149 (12%)

Query: 59  LEVIIEKANAA-PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG 107
           ++ + +  N    I++  ++   L  + +                T+ K      E+N+ 
Sbjct: 366 MKEMRKPGNGNDKIVIVSNYTQTLDLIGRMCRENSWGFCRLDGSITMKKRQKMCDEFNDP 425

Query: 108 KIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             PL        + G GLNL  GGN LV F   W+    +Q   R       + G K+  
Sbjct: 426 NSPLVAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPAVDKQAAARCW-----RDGQKKRC 479

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F Y  +A  T++E + QR  +K  +Q ++
Sbjct: 480 FTYRFLATGTVEEKIFQRQLSKEGLQSVV 508


>gi|119570419|gb|EAW50034.1| helicase, lymphoid-specific, isoform CRA_i [Homo sapiens]
          Length = 839

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 59/149 (39%), Gaps = 18/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  + ++ +   +++     S L  L                  +  +    +  +N +
Sbjct: 607 MLPELKKRGHKV-VLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTD 665

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ +      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 666 PEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 719

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 720 VYRLVTANTIDQKIVERAAAKRKLEKLII 748


>gi|297806511|ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316976|gb|EFH47398.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 861

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 26/177 (14%)

Query: 42  YDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------A 87
            D E         K+ AL  ++    +++     +V   F   L  L+            
Sbjct: 675 TDGEDTKSSTKSSKVSALLSLLIASRQESPNTKSVVFSQFRKMLLLLETPLKAAGFTILR 734

Query: 88  FPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                TL K    I E+   ++    +L A   + G G+NL    + +     WW+    
Sbjct: 735 LDGAMTLKKRTQVIGEFGNPELTGPVVLLASLKASGAGINLT-AASRVYLLDPWWNPAVE 793

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +Q ++RI      + G K+ V +  +IA+++I+E VL+  + K  + +    A K+ 
Sbjct: 794 EQAMDRI-----HRIGQKQEVKMIRMIARDSIEERVLELQQKKKNLAN---EAFKRR 842


>gi|198434196|ref|XP_002124510.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
            intestinalis]
          Length = 1444

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
               +++     S L  LQ            F      +     I+E+N    + L     
Sbjct: 1220 KHKVLLFSQMTSMLDVLQDYCVMRKFSFVRFDGSTKCEDRFAYIEEFNNDPNVFLFLLST 1279

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL  G + ++ +   W+ +   Q  +R       + G +R V VY ++   TI
Sbjct: 1280 RAGGLGINLT-GADTVIIYDSDWNPQNDSQAQDRC-----HRIGQERPVMVYRMVTMATI 1333

Query: 177  DELVLQRLRTKSTIQDLLL 195
            D+ +++R   K T++ +++
Sbjct: 1334 DQQIMERAARKRTMEKMIM 1352


>gi|7508346|pir||T28968 hypothetical protein T23H2.3 - Caenorhabditis elegans
          Length = 1026

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 28/168 (16%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN 105
            ++ +  I+EK     +++   + S L  ++K             G+ L KD    +  +N
Sbjct: 846  LEVVREILEK--KEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFN 903

Query: 106  --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      + G K+
Sbjct: 904  QEKGGAQVMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YRMGQKK 957

Query: 164  AVFVY--------YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             VF++         LI + TI++ V+     K  +   +L       +
Sbjct: 958  EVFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKL 1005


>gi|294949971|ref|XP_002786396.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
 gi|239900688|gb|EER18192.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
          Length = 756

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 71  IIVAYHFNSDLARLQKA-----FPQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPAS 118
           +++  ++   +  LQ+      +P  R      + K    +  +N+ K    +      +
Sbjct: 522 VVIISNYTQTIDLLQRMCQEQQWPVIRLDGSIGVKKRHSLVSTFNDPKADAFVFLLSSKA 581

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  GGN LV F   W+    +Q + RI      + G  +  ++Y L++  TI+E
Sbjct: 582 GGCGLNL-IGGNRLVMFDPDWNPANDRQAMARIW-----RDGQTKVCWIYRLLSTGTIEE 635

Query: 179 LVLQRLRTKSTIQDLLLN 196
            + QR   K ++ +L++ 
Sbjct: 636 KIYQRQMKKDSLSELVVQ 653


>gi|328353422|emb|CCA39820.1| DNA helicase [Pichia pastoris CBS 7435]
          Length = 1103

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAP 70
            Q   +   N  SK  K        V   E  +   +        KI AL   ++  +   
Sbjct: 886  QENEVLCPNCRSKISKLRLFKTHLVEDSERGYSVTLFHPYGSSSKINALLRHLKTIHETK 945

Query: 71   --IIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN----EGKIPLL 112
              ++V   F+S L  +Q    + +             L +    ++E+N     G I +L
Sbjct: 946  EHVVVISQFSSFLDLIQAELSKYKKEFKVMKFDGQLSLSERQVVLKEFNDNPENGGINVL 1005

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +       WW      Q I+R+      + G  + V V   I 
Sbjct: 1006 LLSLKAGGVGLNLTN-ASRAFMMDPWWSPSVEAQAIDRL-----HRIGQSKNVNVVRFIM 1059

Query: 173  QNTIDELVLQRLRTKSTIQDLL 194
            + +I+E +L+    K  + + +
Sbjct: 1060 EGSIEEKMLKVQERKKQLGEAV 1081


>gi|317143698|ref|XP_001819632.2| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus oryzae RIB40]
          Length = 1090

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W  V   KI+    I+   +      I+   F S L  L+          + +    
Sbjct: 912  EKTW--VSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRRYDGSM 969

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 970  KPGDRNSAVLDFTDSPDCKIILVSLKAGNSGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1027

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ QNT+++ +L+    K  + +  L+
Sbjct: 1028 ----AHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALD 1068


>gi|145357178|ref|XP_001422798.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583042|gb|ABP01157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 806

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 56  IKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           + AL  +  + N      IV   + + +  ++    + +           + +    +Q 
Sbjct: 639 VNALRDMRNQENGHLNKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQA 698

Query: 104 W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +  + ++     S G GLNLQ   N +     WW+     Q +      R  + G  
Sbjct: 699 FREDPNVSVILMSLKSGGEGLNLQ-AANYVYVLEPWWNPAVEMQAV-----MRAHRIGQL 752

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R V       + TI+E +++    K  + +  ++ 
Sbjct: 753 RPVTAVRFSTKGTIEERMMELQEKKQLVFEGCMDG 787


>gi|115441433|ref|NP_001044996.1| Os01g0881000 [Oryza sativa Japonica Group]
 gi|56784632|dbj|BAD81679.1| putative chromatin remodeling factor CHD3 [Oryza sativa Japonica
           Group]
 gi|113534527|dbj|BAF06910.1| Os01g0881000 [Oryza sativa Japonica Group]
          Length = 1150

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 37/224 (16%)

Query: 8   QRELYCDLQGENIEAFNSASKTVK----------CLQLANGAVYYDEEKHWKEV------ 51
           QRELY ++   N    NSA +  +            +  N  V  +  +   E       
Sbjct: 781 QRELYINILERNYSKLNSAIRNGRKLSLNNILMELRKCCNHPVGLEVGQQATEDVFLSLI 840

Query: 52  -HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
               K++ L  ++ +       +++       L  L         + A   G+T L    
Sbjct: 841 ASSGKLQLLHKLLPRLKERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQ 900

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+E+     +  +      + G G++L  G + ++ +   ++     Q       +R 
Sbjct: 901 ESIEEYKNIDSETFIFLMSTRAGGMGVDL-PGADRVIIYDPDFNPFMDLQA-----QSRA 954

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY LI + +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 955 HRIGQTRPVVVYQLITKCSVEEKILQKSKQKLAIENMLMNSSKK 998


>gi|154316345|ref|XP_001557494.1| hypothetical protein BC1G_03758 [Botryotinia fuckeliana B05.10]
 gi|150846544|gb|EDN21737.1| hypothetical protein BC1G_03758 [Botryotinia fuckeliana B05.10]
          Length = 917

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 50  EVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
            V   K + L  ++    K+    I++  ++ S L  L               G T    
Sbjct: 595 VVASSKFRVLNRMLMRLSKSTTEKIVIVSNYTSTLDLLVSHLSSLNLPFLRLDGSTPQAK 654

Query: 98  PCT-IQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +  +N     K         S G G+NL  G + LV F + W+     Q + RI  
Sbjct: 655 RQDLVNTFNKTPASKYFAFLLSAKSGGAGINL-IGASRLVLFDVDWNPATDLQAMARI-- 711

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               + G KR V +Y  +    +DE + QR  TK  + D +++  K E 
Sbjct: 712 ---HRDGQKRPVKIYRFLMSGGMDEKIYQRQVTKMGLADSVMDGKKNEA 757


>gi|836793|dbj|BAA09277.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 778

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|91090218|ref|XP_968156.1| PREDICTED: similar to E1a binding protein P400 [Tribolium castaneum]
          Length = 2612

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 19/189 (10%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            A   ++      ++A+  V    +    +    K++ L+ ++ K  +    +++      
Sbjct: 1427 AACLSAPATSLHRIASAMVTQFPDPRLIQYDCGKLQTLDKLLRKLKSEGHRVLIFTQMTK 1486

Query: 80   DLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L+                  +D+    ++ +N + +I        S G G+NL  G
Sbjct: 1487 MLDVLEAFLNFHGHIYLRLDGTTKVDQRQLLMERFNGDTRIFAFILSTRSGGIGVNLT-G 1545

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+   W+     Q  +R       + G  R V +Y L+++ TI+E +L++   K 
Sbjct: 1546 ADTVIFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLVSERTIEENILKKANQKR 1600

Query: 189  TIQDLLLNA 197
             + DL +  
Sbjct: 1601 LLGDLAIEG 1609


>gi|70992713|ref|XP_751205.1| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus fumigatus
            Af293]
 gi|66848838|gb|EAL89167.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            fumigatus Af293]
          Length = 1376

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 45   EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W      ++ ++ L+ I ++ ++   I+   F + L  L+          + +    
Sbjct: 1068 EKTWVTSAKIEKTLEILQEIQDREDSEKTIIFSQFTALLDLLEVPIVRRGWGYRRYDGSM 1127

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R  D++   ++  +     ++     +   GLNL    + ++ F  +W+     Q I+R 
Sbjct: 1128 RPGDRNAAVLEFTDNPDCKIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEDQAIDR- 1185

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ Q T+++ +L+    K  I D  L+
Sbjct: 1186 ----AHRIGQMRQVHIHRILVQKTVEDRILELQEKKREIIDGALD 1226


>gi|242774780|ref|XP_002478510.1| SNF2 family helicase/ATPase PasG, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722129|gb|EED21547.1| SNF2 family helicase/ATPase PasG, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 895

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 43  DEEKHWKEV---HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------- 86
           D+     E       K+  L+ ++         I++   F + L  +Q            
Sbjct: 639 DDSSTVDETLVTASGKMLLLDRLVPCLMQKGHKILIFSQFKTQLDLIQDWATQLRGWNCC 698

Query: 87  AFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G +       I+ +N  K   +      + G G+NL    + ++ F   W+ ++  
Sbjct: 699 RIDGGVSQIDRRAQIKAFNTDKNFKIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQDL 757

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Q        R  + G  R V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 758 QA-----QDRAHRIGQTRPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 806


>gi|159130340|gb|EDP55453.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            fumigatus A1163]
          Length = 1374

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 45   EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W      ++ ++ L+ I ++ ++   I+   F + L  L+          + +    
Sbjct: 1066 EKTWVTSAKIEKTLEILQEIQDREDSEKTIIFSQFTALLDLLEVPIVRRGWGYRRYDGSM 1125

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R  D++   ++  +     ++     +   GLNL    + ++ F  +W+     Q I+R 
Sbjct: 1126 RPGDRNAAVLEFTDNPDCKIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEDQAIDR- 1183

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ ++ Q T+++ +L+    K  I D  L+
Sbjct: 1184 ----AHRIGQMRQVHIHRILVQKTVEDRILELQEKKREIIDGALD 1224


>gi|220673001|emb|CAX12380.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
 gi|220678449|emb|CAX12948.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
          Length = 1035

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 393 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPG 452

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 453 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 512

Query: 90  QGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +NE      L      + G G+NL    ++++ +   W+ +   Q
Sbjct: 513 DGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 571

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 572 AMDR-----AHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 616


>gi|326489199|dbj|BAK01583.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326497361|dbj|BAK02265.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 838

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI AL      +IE   +A  IV   F S L  ++ +  +               + 
Sbjct: 665 TSTKIDALREEIRNMIEHDGSAKGIVFSQFTSFLDLIEFSLQRSGIKCVQLNGKMNMVEK 724

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  + N+    +      + G  LNL    + +     WW+     Q  +RI     
Sbjct: 725 GRAIDTFINDPDCRIFLMSLKAGGVALNLTVASH-VFLMDPWWNPAVESQAQDRI----- 778

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + +     + ++T++E +LQ    K  + D
Sbjct: 779 HRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFD 814


>gi|37542684|gb|AAL47211.1| chromatin-remodeling factor CHD3 [Oryza sativa]
          Length = 1360

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y    R       G ++   N     ++  +L   A   DE +      +   + LE 
Sbjct: 555 KNYEVLTRR-----SGGHVSLINV---VMELRKLCCHAFMTDEPEEPANSEEALRRLLES 606

Query: 61  ----VIIEKA------NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
                +++K           +++   F   L  L+              G+    +    
Sbjct: 607 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 666

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+     Q + R       +
Sbjct: 667 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AHR 720

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K T
Sbjct: 721 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGT 764


>gi|328786654|ref|XP_624551.3| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis
           mellifera]
          Length = 821

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 22/157 (14%)

Query: 55  KIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTI 101
           KI  ++ +I+   K N   ++++Y +   L  L++                T       I
Sbjct: 554 KISIVQTLIKNLKKTNEKLVLISY-YTQTLDLLERVCNMECLQFLRLDGNTTSSTRSKII 612

Query: 102 QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N       +      + G GLNL  G + L+ F   W+     Q + RI      + 
Sbjct: 613 EQFNSTNDNNKIFLLSAKAGGVGLNL-PGASRLILFDSDWNPASDSQAMARIW-----RD 666

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K  V++  L+   TI+E + QR   K+ + + +++
Sbjct: 667 GQKNDVYILRLLTTGTIEEKIFQRQINKANLSETVID 703


>gi|328705070|ref|XP_001948023.2| PREDICTED: DNA repair and recombination protein RAD54-like
           [Acyrthosiphon pisum]
          Length = 751

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA---RLQK-------AFPQGRTLDKDPCTIQEWN 105
           +  +  +I+      +++  ++   L    RL K             T  K    + + N
Sbjct: 489 LDTMLAVIKTTTTDRVVLISNYTQTLELFERLAKLRNYTFVRLDGSMTAKKRAKAVDDIN 548

Query: 106 EGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                +        + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 549 SPTSGVFLFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 602

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             FVY  +A  +I+E ++QR   K  +   +++
Sbjct: 603 PCFVYRFLATGSIEEKMMQRQAHKKALSSSVVD 635


>gi|291408167|ref|XP_002720326.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 1 [Oryctolagus
           cuniculus]
          Length = 1053

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NS+ K  K       +QL    N    +D     
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 472 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 531

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I+ +N       +      + G G+NL    ++++ 
Sbjct: 532 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVIL 590

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 591 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 645

Query: 195 LN 196
           + 
Sbjct: 646 IQ 647


>gi|125995400|ref|NP_001075098.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Danio rerio]
 gi|124481629|gb|AAI33098.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
          Length = 1028

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 386 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPG 445

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 446 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 505

Query: 90  QGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +NE      L      + G G+NL    ++++ +   W+ +   Q
Sbjct: 506 DGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 564

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 565 AMDR-----AHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 609


>gi|71649857|ref|XP_813640.1| transcription activator [Trypanosoma cruzi strain CL Brener]
 gi|70878541|gb|EAN91789.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1092

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 42/232 (18%)

Query: 8   QRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHWKE 50
           QR+ Y  +  ++ EA N AS           +   ++ N     D               
Sbjct: 390 QRKWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIV 449

Query: 51  VHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQK---------AFPQGRT--L 94
            H  K+  L+ ++     EK     +++   F + L  L+              G T   
Sbjct: 450 KHSGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGY 509

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+D   +  +N       +      + G G+NLQ   ++++ +   W+ +   Q      
Sbjct: 510 DRDAQ-MAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVI-YDSDWNPQMDLQA----- 562

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R  + G KR V VY  I + T++E + +R   K  +  +++   + +   
Sbjct: 563 QDRAHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGRMQGRG 614


>gi|258577009|ref|XP_002542686.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
 gi|237902952|gb|EEP77353.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
          Length = 1203

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 20/165 (12%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKD 97
           V   K++ ++ +IE  K      ++       L  L+K                  +   
Sbjct: 742 VKSGKMQVVKSLIELWKETGHKTLLFAQHRIMLDILEKFMKSLPGFNYRRMDGNTPIKIR 801

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+N +  I +        G G+NL  G + ++ +   W+     Q  ER      
Sbjct: 802 QSIVDEFNTDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDLQARERAW---- 856

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 857 -RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 900


>gi|195582827|ref|XP_002081227.1| GD10909 [Drosophila simulans]
 gi|194193236|gb|EDX06812.1| GD10909 [Drosophila simulans]
          Length = 1001

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|310801698|gb|EFQ36591.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1773

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++AL+ ++   +A     ++       L  L++               
Sbjct: 1437 PDKRLLQYDCGKLQALDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1496

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++       +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1497 TKIEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1555

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1556 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1596


>gi|302420893|ref|XP_003008277.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
 gi|261353928|gb|EEY16356.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
          Length = 1183

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++AL+ ++   +A     ++       L  L++             G 
Sbjct: 952  PDKRLLQYDCGKLQALDKLLRKLQAGGHRALIFTQMTKVLNILEQFLNIHGHKYLRLDGA 1011

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1012 TKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1070

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1071 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1111


>gi|134108572|ref|XP_777237.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259922|gb|EAL22590.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1399

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF 88
            LQ  N  V  ++      +   K+K L      IIE+  +  IIV   F   +  L   F
Sbjct: 1201 LQAVNDEVSIED-----VLPSTKMKKLGELIDAIIEQDPSQKIIVFSQFVEYID-LCSIF 1254

Query: 89   PQGRTL-----------DKDPCTIQEWN----EGKIP-LLFAHPASCGHGLNLQYGGNIL 132
             + R +           D+   TI+++N    E K P  L       G GLNL    N +
Sbjct: 1255 LRRRNIPHAKYVGSMKQDEREDTIKDFNRPMEEDKSPRCLLMSLKCGGVGLNLCI-ANHV 1313

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +   L W+     Q ++R       + G  R V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1314 ICLDLAWNAATENQAVDR-----AHRIGQTREVVVHRLVVENTIDQRLMELQQQKQALSD 1368

Query: 193  LLL 195
              +
Sbjct: 1369 GAM 1371


>gi|157870081|ref|XP_001683591.1| DNA repair and recombination protein RAD54 [Leishmania major strain
           Friedlin]
 gi|68126657|emb|CAJ04466.1| putative DNA repair and recombination protein RAD54 [Leishmania
           major strain Friedlin]
          Length = 1127

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEG 107
            L+ +        +++  +F   L  +                   + K    +  +N  
Sbjct: 800 VLDELKGNGEHDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVP 859

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N L+ F   W+     Q + R+      + G K+ V
Sbjct: 860 GSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPANDAQAMGRVW-----RDGQKKCV 913

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L++  TI+E + QR  +K  +   +++
Sbjct: 914 FIYRLLSTGTIEEKIYQRQVSKQGLSANVVD 944


>gi|293354700|ref|XP_002728549.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1094

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 256 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 315

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 316 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 375

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 376 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 434

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 435 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 479


>gi|145350886|ref|XP_001419826.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580058|gb|ABO98119.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 821

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 26/207 (12%)

Query: 5   HKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + +++    + G     ++ E+ +         +L N A    E          K+  L
Sbjct: 522 DQLKQKSMLSMLGRIGKTQDAESISPLQAIQTLQKLCNAAALATEVSDPVA-SSSKLAVL 580

Query: 60  EVIIEK-ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI--QEWNEG 107
             +    AN   I+V   F + L  + K            QG T  K+  +I     N G
Sbjct: 581 RAMFRALANDERIVVVSGFTTTLDLIAKLCESEHLKYDRLQGSTPPKERTSIVRTFNNSG 640

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           KI  L     + G GLNL  G N LV     W+     Q   R+      + G  +   +
Sbjct: 641 KI--LLLSTKAGGVGLNL-VGANRLVLVDSSWNPAHDLQAQARVW-----REGQTKPCSI 692

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Y L++  TI+E + QR   K  +   L
Sbjct: 693 YRLLSTGTIEERMFQRQELKGALARTL 719


>gi|157119050|ref|XP_001659312.1| E1a binding protein P400 [Aedes aegypti]
 gi|108883212|gb|EAT47437.1| E1a binding protein P400 [Aedes aegypti]
          Length = 3081

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L+ ++++  +    +++       L  L+              G T  +    + +
Sbjct: 1625 KLQTLDRLLKQLKSGGHRVLIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQLLME 1684

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K + +      S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1685 RFNGDKRVFVFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1738

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1739 TRDVHIYRLVSEKTIEENILKKANQKRMLGDLAIEG 1774


>gi|168054197|ref|XP_001779519.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162669101|gb|EDQ55695.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 631

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKA 58
           K+YHK       C ++    E  N +  T+  + L  G V   + K      +   K +A
Sbjct: 395 KKYHKMAVFGNECSVERVREELSNYSDFTLHRMCLTYGGVPGGQGKLDDHHVLASAKCQA 454

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE--WN 105
           L  ++ +   N    ++   + + L  L+ A            G T   +   + +   N
Sbjct: 455 LVKLLPQLKKNGHRPLIFSQWTNMLDILEWALAVIGLRFTRLDGSTPVTERQNLVDEYNN 514

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              I +      + G GLNL     +++         +    ++R    R  + G  + V
Sbjct: 515 NPDIFVFLLSTRAGGQGLNLTGADTVIIHD------VDFNPQMDRQAEDRCHRIGQSKPV 568

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+   T+DE + +  + K  +   +L +
Sbjct: 569 TVYRLVTNGTVDESIFRIAQQKLVLDAAVLES 600


>gi|169598354|ref|XP_001792600.1| hypothetical protein SNOG_01979 [Phaeosphaeria nodorum SN15]
 gi|160704380|gb|EAT90191.2| hypothetical protein SNOG_01979 [Phaeosphaeria nodorum SN15]
          Length = 1307

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 22/163 (13%)

Query: 50  EVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
                K++ L+ ++ + +      I++  ++ + L  +++                  +K
Sbjct: 592 HASSTKLRLLDSLVHRIHTTTEEKIVIVSNYTTTLDMIERMLVSLSYTYLRLDGSTPSNK 651

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               ++++N+              S G GLNL  G + +V F + W+     Q + RI  
Sbjct: 652 RQALVEKFNKTPKAASFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPATDLQAMARI-- 708

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K  V +Y  + +  IDE + QR   K  + + +++
Sbjct: 709 ---HRDGQKLPVKIYRFLVKGGIDEKIYQRQVMKMGLANAVVD 748


>gi|300708443|ref|XP_002996400.1| hypothetical protein NCER_100499 [Nosema ceranae BRL01]
 gi|239605700|gb|EEQ82729.1| hypothetical protein NCER_100499 [Nosema ceranae BRL01]
          Length = 664

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 56  IKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW 104
           ++ L  +   K N    IV   + + L  L+    +             +++    I+++
Sbjct: 499 VQKLTELNTNKNNLEKSIVFSQYVNFLEILRWRLERAGFRCVVIYGNMPINQRKAAIEKF 558

Query: 105 NEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N    I +      + G  LNL    N +    LWW+    +Q ++RI      + G  R
Sbjct: 559 NTDHNITVFLISLKAGGVALNLTEANN-VFLMDLWWNPAVEEQAMDRI-----HRIGQHR 612

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + ++ +I +N+I+  +L+  + K  + +  + 
Sbjct: 613 PIKIHRVIIENSIESKILELQKKKKALFESSVE 645


>gi|308067058|ref|YP_003868663.1| Hypothetical helicase [Paenibacillus polymyxa E681]
 gi|305856337|gb|ADM68125.1| Hypothetical helicase [Paenibacillus polymyxa E681]
          Length = 987

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 41/233 (17%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNS-ASKTVKCLQLANGAV--------------YYDEE 45
             Y +  +EL   +Q  E IE   +  S   +  QL +                 Y   +
Sbjct: 739 ALYDQIVKELMERMQKLEGIERKGAILSALTQLKQLCDHPALLTKEAPPDTAASGYSPSD 798

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
                    K++ +  ++++        ++   +      LQ+   Q          G T
Sbjct: 799 LEAVISRSSKLERILAMVKELREEGERCLIFTQYIGMGQMLQRVLAQELQEPVLYLNGST 858

Query: 94  LDK-DPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   I ++    +P      +      + G GLNL    N +  F  WW+     Q
Sbjct: 859 SKTARDRMIDQFQSHTLPPAEQPSVFILSLKAGGVGLNLT-AANHVFHFDRWWNPAVENQ 917

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +R       + G  + V V+  I+  T++E + + L +K  + D ++ + +
Sbjct: 918 ATDR-----AYRMGQTKDVQVHKFISLGTLEERIDEMLESKQQLSDQIITSTE 965


>gi|255710645|ref|XP_002551606.1| KLTH0A03410p [Lachancea thermotolerans]
 gi|238932983|emb|CAR21164.1| KLTH0A03410p [Lachancea thermotolerans]
          Length = 806

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ ++    A    +++   F S L  ++              G   ++    
Sbjct: 559 TSGKLQILQQLVPPLVAKKHKVLIFTQFVSMLDLIEDWCELNEIRVCRIDGSMDNEARQE 618

Query: 101 -IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N+G            + G G+NL    + +V F   W+ +   Q ++R       
Sbjct: 619 HIERFNDGHDSYDAFLISTRAGGLGINLT-AADTVVLFDSDWNPQVDLQAMDR-----TH 672

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  + V VY L   NT++ ++L R  +K  ++ +++ 
Sbjct: 673 RIGQTKPVIVYRLCCDNTVEHVILTRAASKRKLEKMVIQ 711


>gi|322827781|gb|EFZ31794.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1087

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 42/232 (18%)

Query: 8   QRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHWKE 50
           QR+ Y  +  ++ EA N AS           +   ++ N     D               
Sbjct: 385 QRKWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIV 444

Query: 51  VHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQK---------AFPQGRT--L 94
            H  K+  L+ ++     EK     +++   F + L  L+              G T   
Sbjct: 445 KHSGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGY 504

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+D   +  +N       +      + G G+NLQ   ++++ +   W+ +   Q      
Sbjct: 505 DRDAQ-MAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVI-YDSDWNPQMDLQA----- 557

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R  + G KR V VY  I + T++E + +R   K  +  +++   + +   
Sbjct: 558 QDRAHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGRMQGRG 609


>gi|303271827|ref|XP_003055275.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463249|gb|EEH60527.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 571

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 39/201 (19%)

Query: 27  SKTVKCLQLANGAVYY------DEEKHWKEVHDE--KIKALEVIIEKAN--AAPIIVAYH 76
           S  ++  +  N    +      ++    +E+ +   K+  L+ I+ +       +++   
Sbjct: 349 SLLMQLRKCCNHPFLFAGTDVPEDGVPIEELVEASGKLAVLDRILRRLKDAGHRVVLFSQ 408

Query: 77  FNSDLARL--------------------QKAFPQGRT-LDKDPCTIQEWNEGKIPLL--F 113
           F S L  L                    + A   G T   +    I  +N    P+    
Sbjct: 409 FTSMLDILSDFLTLRGYQARSIHWFPYDRYARLDGSTNRVQRSVDIAAFNRPNSPMFAFL 468

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NLQ   +  + F   W+ +   Q + R+      + G K+ V VY LI  
Sbjct: 469 LSTRAGGLGVNLQT-ADTCILFDSDWNPQVDTQAMARV-----HRIGQKKPVHVYRLITA 522

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           ++++E + QR   K  ++ ++
Sbjct: 523 DSVEERMQQRAEKKLFLEQMV 543


>gi|195485258|ref|XP_002091017.1| GE12485 [Drosophila yakuba]
 gi|194177118|gb|EDW90729.1| GE12485 [Drosophila yakuba]
          Length = 1027

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|167035744|ref|YP_001670975.1| non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
 gi|166862232|gb|ABZ00640.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
          Length = 633

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 21/195 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDE-EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
           A  +        +        D        +   K +  + I+E+  A    +I+   F 
Sbjct: 424 AAATLVALTSLRRFCAHPSLMDSTSGSVDPMSFSKFRRFDEIVEEIFAIGEKVIIFTSFT 483

Query: 79  SDLARLQKAFP----------QGRT-LDKDPCTIQEWNEGKIPLLFA-HPASCGHGLNLQ 126
           +    + +              GR  +D     I  ++  K       +P + G GLN+ 
Sbjct: 484 AMADMIARHIETRYGAFAGVIDGRLAIDDRQPLIDRFSSVKGGAALVLNPKAGGAGLNIT 543

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              N ++ ++  W+     Q   R       + G +  V V+ L+  +T++++V +RLR 
Sbjct: 544 -AANHVIHYNPEWNPAMEDQASAR-----AYRRGQELPVTVHRLLVSDTVEDVVDERLRR 597

Query: 187 KSTIQDLLLNALKKE 201
           K  + D  +  ++ +
Sbjct: 598 KRALSDTAVIGVEGK 612


>gi|321251541|ref|XP_003192100.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
 gi|317458568|gb|ADV20313.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
          Length = 1202

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 46   KHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
                 V   K++A    LE + ++   A  +V   F S L  ++    +           
Sbjct: 1013 GKVDLVTSTKLRAMLRQLEEMRQQDPKAKALVFSQFTSFLDLIETTLTKQGIRWLRFDGT 1072

Query: 95   ---DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +   TI+E+        +L     + G GLNL    N +     WW+    QQ I+
Sbjct: 1073 MSQAQRASTIEEFGRKTNEPLILLISLKAGGVGLNLTM-ANYVFLMDTWWNEAIEQQAID 1131

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G  + V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1132 RV-----HRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1173


>gi|294897357|ref|XP_002775945.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239882312|gb|EER07761.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1009

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           +  +  E    K+  L  I++K       +++       L  L++               
Sbjct: 585 DGGYGSEQRSGKLSVLLKILDKWVPQGHRVLIFSQTLGMLDILERKVDEKGWTCSRMDGS 644

Query: 92  RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +      + ++N  + P L+       G GLNL  G + +V F   W+     Q  ER
Sbjct: 645 TPVKDRAHIVDDFNSPEGPQLMLLSTRVGGVGLNLT-GADRIVIFDPDWNPMTDAQARER 703

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K  V +Y LIA  T++E + ++   K  +   +L+
Sbjct: 704 AW-----RIGQKNEVLIYRLIAMGTVEESMYKKQIFKHYLSQKILS 744


>gi|302680218|ref|XP_003029791.1| hypothetical protein SCHCODRAFT_58508 [Schizophyllum commune H4-8]
 gi|300103481|gb|EFI94888.1| hypothetical protein SCHCODRAFT_58508 [Schizophyllum commune H4-8]
          Length = 835

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPC 99
              KI+ L  ++E        +++   F   L           +      G T +D+   
Sbjct: 503 DSGKIQTLLRLLEGYIGEKRKVLIFSQFTQVLDILVRVLQLKEITYRILTGSTPVDERQV 562

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+NE   + +      + G G+NL    ++++ F   ++        +R    R  +
Sbjct: 563 LVDEFNENEDLSVFLLSTKAGGMGINLT-AASVVILFDQDFNPH-----NDRQAQDRAYR 616

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R V V  LI + TI+E +L+  +TK  + + +
Sbjct: 617 IGQTRDVDVVKLITRGTIEEDMLRLAQTKLALDEAV 652


>gi|242208815|ref|XP_002470257.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730707|gb|EED84560.1| predicted protein [Postia placenta Mad-698-R]
          Length = 813

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 21/181 (11%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
             T   LQL     Y   +  + +    K+K L  ++E+  A    +++   F   L  L
Sbjct: 610 VMTDAELQLFCATKYLQPDDCYLQA--GKVKVLLQLLERYHAEGRRVLIFSQFTQILDIL 667

Query: 85  QKAFPQ----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILV 133
           QK   +             +D     + E+ + + I +      + G G+NL    ++++
Sbjct: 668 QKVLEKEGIRFSLLTGATPVDARQSLVDEFTDDESISVFLLSTKAGGMGINLT-AASVVI 726

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   ++    +Q        R  + G K+ V V  LI + +I+E +L   +TK  + + 
Sbjct: 727 MFDQDFNPHNDKQA-----QDRAYRIGQKQDVDVVKLITKGSIEEDMLALGQTKLALDEA 781

Query: 194 L 194
           +
Sbjct: 782 V 782


>gi|145353728|ref|XP_001421157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581393|gb|ABO99450.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1086

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 56   IKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
            + AL  +  + N      IV   + + +  ++    + +           + +    +Q 
Sbjct: 919  VNALRDMRNQENGHLNKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQA 978

Query: 104  W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  +  + ++     S G GLNLQ   N +     WW+     Q +      R  + G  
Sbjct: 979  FREDPNVSVILMSLKSGGEGLNLQ-AANYVYVLEPWWNPAVEMQAV-----MRAHRIGQL 1032

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V       + TI+E +++    K  + +  ++ 
Sbjct: 1033 RPVTAVRFSTKGTIEERMMELQEKKQLVFEGCMDG 1067


>gi|324505729|gb|ADY42457.1| DNA repair and recombination protein RAD54B [Ascaris suum]
          Length = 746

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           V   K+     ++         ++V  +F   L  L +                   +  
Sbjct: 539 VDSGKLSVFVKMMVSLRETNEKVVVVSNFTKTLDMLSEVCKGIFCTVTRLDGSVVPHRRM 598

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + E+N   +P  +      + G GLNL  G + LV F   W+     Q + RI     
Sbjct: 599 QLVDEFNTSSLPNHVFLLSTKAGGVGLNL-IGASRLVLFDSDWNPAFDVQAMARIW---- 653

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K    +Y L+   TIDE +LQR   KS +
Sbjct: 654 -RDGQKMPCHIYRLVTAGTIDEKILQRQVMKSGL 686


>gi|309360381|emb|CAP31417.2| CBR-RAD-54 protein [Caenorhabditis briggsae AF16]
          Length = 1079

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  RL  +      + +    +  +N+    I        + G GLNL  G N LV F  
Sbjct: 852 DFVRLDGSMS----IKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDP 906

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q + R+      + G K+  F+Y L+A  +I+E + QR   K  +   +++A
Sbjct: 907 DWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDA 961

Query: 198 LKKETIH 204
            +    H
Sbjct: 962 GEDVARH 968


>gi|302684803|ref|XP_003032082.1| hypothetical protein SCHCODRAFT_67837 [Schizophyllum commune H4-8]
 gi|300105775|gb|EFI97179.1| hypothetical protein SCHCODRAFT_67837 [Schizophyllum commune H4-8]
          Length = 811

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 24/162 (14%)

Query: 52  HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQK----------AFPQGRT--LDKD 97
              K+  LE ++++       +++   F   L  ++               G+T  L++ 
Sbjct: 547 ASGKMMVLERLLDELFRRKHKVLLFSQFTKMLDIIEDWAIEFKGWNLCRIDGQTPPLERR 606

Query: 98  PCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +    G  P    L      + G G+NL    + ++F+   W+ +   Q       
Sbjct: 607 AEMDRFQTGGDAPDAPCLFLLSTRAGGLGINLT-AADTVIFYDQDWNPQMDAQA-----Q 660

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V ++ L++ +TI+  ++QR   K  ++ L++
Sbjct: 661 DRAHRIGQTRPVLIFRLVSAHTIETKIMQRATEKRKLEALVI 702


>gi|268566403|ref|XP_002639713.1| C. briggsae CBR-RAD-54 protein [Caenorhabditis briggsae]
          Length = 782

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  RL  +      + +    +  +N+    I        + G GLNL  G N LV F  
Sbjct: 555 DFVRLDGSMS----IKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDP 609

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q + R+      + G K+  F+Y L+A  +I+E + QR   K  +   +++A
Sbjct: 610 DWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDA 664

Query: 198 LKKETIH 204
            +    H
Sbjct: 665 GEDVARH 671


>gi|302811536|ref|XP_002987457.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
 gi|300144863|gb|EFJ11544.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
          Length = 1292

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQG 91
           D  +        K+  L+ +  K  A    +++   F   L  L+              G
Sbjct: 576 DAVQKTLVEASGKLLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYKNWNYERIDG 635

Query: 92  RTLDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           +    D  + I  +N    KI        + G G+NL    + +V +   W+     Q +
Sbjct: 636 KVSGADRQSRIDRFNAPGSKIFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHADMQAM 694

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            R       + G    V +Y LI + TI+E ++Q  + K  ++ L++  +K + +
Sbjct: 695 AR-----AHRMGQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVVGRMKTQIL 744


>gi|218194432|gb|EEC76859.1| hypothetical protein OsI_15041 [Oryza sativa Indica Group]
          Length = 1138

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--P 70
            C L    I      +   +C          D E +WK     K+  L  I+E        
Sbjct: 939  CPLCRSPITKSELITLPSQCR------FQVDPENNWK--DSCKVIKLIKILEGLQEKREK 990

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP-LLFAHPASC 119
             IV   F S    L+  F Q                    ++E++E K   +L     + 
Sbjct: 991  SIVFSQFTSFFDLLEVPFNQKGIKFLRFDGKLSQKHREKVLKEFSESKDKLVLLMSLKAG 1050

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    +Q I RI      + G KRAV V   I ++T++E 
Sbjct: 1051 GVGLNLTAASN-VFLMDPWWNPAVEEQAIMRI-----HRIGQKRAVQVRRFIVKDTVEER 1104

Query: 180  VLQRLRTKS 188
            + +    K 
Sbjct: 1105 MQKVQACKQ 1113


>gi|241602475|ref|XP_002405194.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
 gi|215500578|gb|EEC10072.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
          Length = 680

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 50  EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDK 96
           E    K+K L  ++    + +    I+V  +F   L  +Q+             G T   
Sbjct: 428 EASSGKLKVLAAMLASLWDSSPREKIVVVSNFTRMLNVVQELCACKGYTFVRLDGSTSST 487

Query: 97  DP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                ++ +N       +      + G GLNL  G + +V + + W+     Q + R+  
Sbjct: 488 QRLEIVERFNSAHSDCFVFLLSCKAGGVGLNL-IGASRIVLYDVDWNPANDLQAMARVW- 545

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  R V+VY L+   T++E + QR   K  +   +L 
Sbjct: 546 ----RDGQGRHVYVYRLVTTGTVEEKIYQRQVMKLDLSRTVLE 584


>gi|58531994|emb|CAE04094.3| OSJNBa0096F01.3 [Oryza sativa Japonica Group]
          Length = 1132

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--P 70
            C L    I      +   +C          D E +WK     K+  L  I+E        
Sbjct: 933  CPLCRSPITKSELITLPSQCR------FQVDPENNWK--DSCKVIKLIKILEGLQEKREK 984

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP-LLFAHPASC 119
             IV   F S    L+  F Q                    ++E++E K   +L     + 
Sbjct: 985  SIVFSQFTSFFDLLEVPFNQKGIKFLRFDGKLSQKHREKVLKEFSESKDKLVLLMSLKAG 1044

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    +Q I RI      + G KRAV V   I ++T++E 
Sbjct: 1045 GVGLNLTAASN-VFLMDPWWNPAVEEQAIMRI-----HRIGQKRAVQVRRFIVKDTVEER 1098

Query: 180  VLQRLRTKS 188
            + +    K 
Sbjct: 1099 MQKVQACKQ 1107


>gi|5733122|gb|AAD49435.1| lodestar protein [Homo sapiens]
          Length = 1162

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1054 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1108 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|297683310|ref|XP_002819326.1| PREDICTED: DNA repair and recombination protein RAD54B-like isoform
           1 [Pongo abelii]
 gi|297683312|ref|XP_002819327.1| PREDICTED: DNA repair and recombination protein RAD54B-like isoform
           2 [Pongo abelii]
          Length = 910

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N     + +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 797


>gi|145527844|ref|XP_001449722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417310|emb|CAK82325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDP 98
               K+  L+ +++        +++       L  L++              Q +  D+  
Sbjct: 884  SSSKLLQLDRLLKDLKQKQWRVLIFCQMTRMLDILEEYMLHKGYTYFRMDGQCQINDRRD 943

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +     KI        + G G+ L    + ++F+   W+     Q  +R       +
Sbjct: 944  MVNEFQQNDKIFAFLLSTRAGGLGITLTQ-ADAVIFYDNDWNPTMDAQATDR-----AHR 997

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V+VY LI + TI+E +++R + K  +Q  + + 
Sbjct: 998  IGRTKDVYVYRLITKGTIEERIVKRAQQKQNVQSTVYSG 1036


>gi|109086956|ref|XP_001088870.1| PREDICTED: DNA repair and recombination protein RAD54B isoform 2
           [Macaca mulatta]
          Length = 908

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 637 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 696

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N     + +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 697 QRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 754

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 755 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 796


>gi|195333840|ref|XP_002033594.1| GM21414 [Drosophila sechellia]
 gi|194125564|gb|EDW47607.1| GM21414 [Drosophila sechellia]
          Length = 1027

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|194883574|ref|XP_001975876.1| GG20326 [Drosophila erecta]
 gi|190659063|gb|EDV56276.1| GG20326 [Drosophila erecta]
          Length = 1027

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|66356890|ref|XP_625623.1| Swi2/Snf2 ATpase,Rad16 ortholog [Cryptosporidium parvum Iowa II]
 gi|46226722|gb|EAK87701.1| Swi2/Snf2 ATpase,Rad16 ortholog [Cryptosporidium parvum Iowa II]
          Length = 1278

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 52   HDEKIKAL-EVIIEKANAAPI---IVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               KI  L E + +     P    IV   F + L  +     +             + + 
Sbjct: 1105 SSTKIDTLLEEVNKMMQEDPESKGIVFSQFTNMLDLVSYRLKKANIGCVMLAGSMSILQR 1164

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N+   + ++     + G GLNLQ   N +     WW+     Q        R 
Sbjct: 1165 NSILYSFNKFPDLKIILISLKAGGEGLNLQV-ANYVFLLDPWWNPAVELQA-----FQRA 1218

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G K+ V     I ++TI+E + Q    K  + D  + A
Sbjct: 1219 HRIGQKKKVTALRFITKDTIEERMFQLQEKKQLVFDGTVGA 1259


>gi|256268827|gb|EEU04181.1| Irc5p [Saccharomyces cerevisiae JAY291]
          Length = 853

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|209945934|gb|ACI97198.1| okra [Drosophila simulans]
 gi|209945936|gb|ACI97199.1| okra [Drosophila simulans]
 gi|209945938|gb|ACI97200.1| okra [Drosophila melanogaster]
 gi|209945940|gb|ACI97201.1| okra [Drosophila simulans]
 gi|209945944|gb|ACI97203.1| okra [Drosophila melanogaster]
 gi|209945946|gb|ACI97204.1| okra [Drosophila melanogaster]
 gi|209945948|gb|ACI97205.1| okra [Drosophila melanogaster]
 gi|209945950|gb|ACI97206.1| okra [Drosophila melanogaster]
 gi|209945952|gb|ACI97207.1| okra [Drosophila melanogaster]
 gi|209945954|gb|ACI97208.1| okra [Drosophila melanogaster]
 gi|209945956|gb|ACI97209.1| okra [Drosophila melanogaster]
 gi|209945958|gb|ACI97210.1| okra [Drosophila melanogaster]
 gi|209945962|gb|ACI97212.1| okra [Drosophila melanogaster]
 gi|209945964|gb|ACI97213.1| okra [Drosophila melanogaster]
 gi|209945966|gb|ACI97214.1| okra [Drosophila melanogaster]
 gi|209945968|gb|ACI97215.1| okra [Drosophila melanogaster]
 gi|209945970|gb|ACI97216.1| okra [Drosophila melanogaster]
 gi|209945972|gb|ACI97217.1| okra [Drosophila melanogaster]
 gi|209945974|gb|ACI97218.1| okra [Drosophila melanogaster]
 gi|209945976|gb|ACI97219.1| okra [Drosophila melanogaster]
 gi|209945978|gb|ACI97220.1| okra [Drosophila melanogaster]
 gi|209945980|gb|ACI97221.1| okra [Drosophila melanogaster]
 gi|209945982|gb|ACI97222.1| okra [Drosophila melanogaster]
 gi|209945984|gb|ACI97223.1| okra [Drosophila melanogaster]
 gi|209945986|gb|ACI97224.1| okra [Drosophila melanogaster]
 gi|209945990|gb|ACI97226.1| okra [Drosophila melanogaster]
 gi|209945992|gb|ACI97227.1| okra [Drosophila melanogaster]
 gi|209945996|gb|ACI97229.1| okra [Drosophila melanogaster]
 gi|209945998|gb|ACI97230.1| okra [Drosophila melanogaster]
 gi|209946000|gb|ACI97231.1| okra [Drosophila melanogaster]
 gi|209946002|gb|ACI97232.1| okra [Drosophila melanogaster]
          Length = 168

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 33  MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 91

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 92  ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 145

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y L+A  +I+E +LQR   K 
Sbjct: 146 YIYRLVASGSIEEKILQRQTHKK 168


>gi|168023352|ref|XP_001764202.1| transcription-coupled repair protein CSB/RAD26 [Physcomitrella
           patens subsp. patens]
 gi|162684642|gb|EDQ71043.1| transcription-coupled repair protein CSB/RAD26 [Physcomitrella
           patens subsp. patens]
          Length = 802

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K L  ++E  K     +++       L  ++          +       + +    
Sbjct: 323 SGKLKVLAQVLELWKTQGHRVLLFTQTQQMLDIVENYVTSKGYVYRRMDGNTPVKQRMQL 382

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+NEG  + +        G G NL  G N +V F   W+     Q  ER       + 
Sbjct: 383 IDEFNEGDHVFIFILTTKVGGLGTNL-IGANRVVIFDPDWNPSTDMQARERAW-----RI 436

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G K+ V +Y LI + TI+E V  R   K  + + +L
Sbjct: 437 GQKKEVVIYRLITRGTIEEKVYHRQIYKHFLTNKIL 472


>gi|209945988|gb|ACI97225.1| okra [Drosophila melanogaster]
          Length = 168

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 33  MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 91

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 92  ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 145

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y L+A  +I+E +LQR   K 
Sbjct: 146 YIYRLVASGSIEEKILQRQTHKK 168


>gi|109014585|ref|XP_001112974.1| PREDICTED: transcription termination factor 2-like isoform 1 [Macaca
            mulatta]
          Length = 1170

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 1002 SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1061

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1062 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1115

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1116 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1151


>gi|109014588|ref|XP_001112999.1| PREDICTED: transcription termination factor 2-like isoform 2 [Macaca
            mulatta]
          Length = 1163

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 995  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1054

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1055 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1108

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1109 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1144


>gi|3702846|gb|AAC64044.1| RNA polymerase II termination factor [Homo sapiens]
          Length = 1162

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1054 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1108 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|300122623|emb|CBK23191.2| unnamed protein product [Blastocystis hominis]
          Length = 1548

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 18/148 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT-IQEW--NEGKIPLL 112
            ++    +++   F   L  L++         A   G+T   D  T I  +   +    + 
Sbjct: 1071 QSEGHRVLIFSQFVKMLDILEEYCQLRAFKVARIDGQTKGNDRQTAIDAFSREDSDCFIF 1130

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + +V +   W+ +   Q   R       + G K+ V VY L+ 
Sbjct: 1131 LLSTRAGGLGINLT-AADTVVIYDSDWNPQNDSQATARC-----HRIGQKQEVSVYRLLT 1184

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            QNT +  + +R   K  I+ ++L+  K 
Sbjct: 1185 QNTYEYEMFERASRKLAIESVVLDREKP 1212


>gi|221055808|ref|XP_002259042.1| snf2 family n-terminal domain [Plasmodium knowlesi strain H]
 gi|193809113|emb|CAQ39815.1| snf2 family n-terminal domain, putative [Plasmodium knowlesi strain
           H]
          Length = 1382

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 37/221 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H  
Sbjct: 543 KLQKKLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI 602

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDP 98
           E    K+  L+ ++ +     + +++       L  +         +     G T+  + 
Sbjct: 603 E-TSGKMSLLDKLLPRLKKENSRVLLFSQMTRVLDIIDDYCRWKKYEYLRIDGSTVGDER 661

Query: 99  CT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 662 QIRINQFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 715

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V VY  + QNT++E +++R   K  +  L++ 
Sbjct: 716 AHRIGQKKKVIVYRFVTQNTVEEKIVERAAKKLKLDSLIIQ 756


>gi|158255470|dbj|BAF83706.1| unnamed protein product [Homo sapiens]
          Length = 1162

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1054 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1108 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|114558614|ref|XP_513683.2| PREDICTED: transcription termination factor, RNA polymerase II [Pan
            troglodytes]
          Length = 1162

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKRGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1054 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1108 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|40807471|ref|NP_003585.3| transcription termination factor 2 [Homo sapiens]
 gi|73920148|sp|Q9UNY4|TTF2_HUMAN RecName: Full=Transcription termination factor 2; AltName:
            Full=Lodestar homolog; AltName: Full=RNA polymerase II
            termination factor; AltName: Full=Transcription release
            factor 2; Short=F2; Short=HuF2
 gi|55665021|emb|CAH71961.1| transcription termination factor, RNA polymerase II [Homo sapiens]
 gi|55959604|emb|CAI12738.1| transcription termination factor, RNA polymerase II [Homo sapiens]
 gi|119577070|gb|EAW56666.1| transcription termination factor, RNA polymerase II, isoform CRA_a
            [Homo sapiens]
 gi|119577071|gb|EAW56667.1| transcription termination factor, RNA polymerase II, isoform CRA_a
            [Homo sapiens]
          Length = 1162

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI      + G 
Sbjct: 1054 AFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI-----YRVGQ 1107

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1108 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|281203153|gb|EFA77354.1| chromo domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1842

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 26/188 (13%)

Query: 20   IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
            ++A        K L      V   E  H   +  + ++ L+++ +       +       
Sbjct: 1015 VKASGKLILLDKLL------VRLKETGHRVLIFSQMVRMLDILADYLKGRGFLF------ 1062

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
                  +      + +K    +  +N    P         + G G+NL    + ++ F  
Sbjct: 1063 ------QRLDGSTSREKRSQAMDRFNAEGSPDFAFLLSTRAGGLGINLST-ADTVIIFDS 1115

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+ +   Q   R       + G K  V +Y L++++TI+E +L+R + K  +  L++ +
Sbjct: 1116 DWNPQNDLQAEAR-----AHRIGQKNTVNIYRLVSKSTIEEEILERAKQKMVLDHLVIQS 1170

Query: 198  LKKETIHV 205
            ++K +   
Sbjct: 1171 MEKSSTKT 1178


>gi|291388286|ref|XP_002710621.1| PREDICTED: RAD54 homolog B [Oryctolagus cuniculus]
          Length = 911

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 638 EEESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAHTRLDGQTPIS 697

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSK 797


>gi|170032260|ref|XP_001844000.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167872116|gb|EDS35499.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 821

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 20/165 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           +H       K+  LE ++E        +++  +F+  L  +                   
Sbjct: 548 QHMGPADSGKLAILESLLEALIERREKVVIVSYFSKTLDMIAGLCEHYNYKFCRLDGATP 607

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  +N     I +      + G GLNL  G + LV F   W+     Q + RI
Sbjct: 608 SQDRGKLVATFNNPSSDIFIFLLSAKAGGIGLNL-VGASRLVLFDNDWNPASDLQAMSRI 666

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 667 W-----RDGQTRNVFIYRLITAFSIEEKIFQRQISKTSLSGSVVD 706


>gi|67481787|ref|XP_656243.1| SNF2 family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56473432|gb|EAL50858.1| SNF2 family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 1527

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 39   AVYYDEEKHWKEVHDE-KIKALEVIIEKAN-----AAPIIVAYHFNSDLARLQK------ 86
            A    E K   ++ +  K+ AL  ++E  N        +++    N  L  ++K      
Sbjct: 1290 AYLKQEGKTIDDITNSPKLMALAELLEMCNIGKDGEHRVLIFAQMNITLELIEKQLFAKQ 1349

Query: 87   -------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           +K    + ++ N+  I +L       G GLNL    +I++F    
Sbjct: 1350 FPYISYYRLDGSVPQNKRTEIVDKFKNDPTIDVLLLTTRVGGLGLNLT-AADIVIFMEHD 1408

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+  +  Q ++R       + G  + V VY LI + T++E ++   + K+ I + ++
Sbjct: 1409 WNPTKDLQAMDR-----AHRLGQNKVVNVYRLIVRQTLEERIMNLQQFKTKIANTVV 1460


>gi|326444982|ref|ZP_08219716.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1408

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 49/216 (22%)

Query: 1    MKQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +K + + Q+      +   +      +A  +A+++ K                       
Sbjct: 1200 LKLFDQLQKICNAPEQFLAEPLDSTYDAERAAARSGKLA--------------------- 1238

Query: 55   KIKALEVIIEKANA--APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC-TI 101
               AL+ ++   +      ++   + +   RL             F    +  +D    I
Sbjct: 1239 ---ALDDLLPTLSDPDESCLIFTRYRAMARRLVHHLQGHGISPLYFSGDISAGRDRQRVI 1295

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +       +     + G GL L    + ++ F   W+  +  Q I+R       + G 
Sbjct: 1296 DTFQNHPGQTMVITIKAGGTGLTLTQASH-VILFDRPWNPAKESQAIDR-----AHRLGQ 1349

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ L  +NT+++ V + LR KS + D +L +
Sbjct: 1350 TRTVTVHQLTTENTLEDRVEELLRHKSALADAVLAS 1385


>gi|213406015|ref|XP_002173779.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
 gi|212001826|gb|EEB07486.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
          Length = 1276

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 71/177 (40%), Gaps = 19/177 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----- 86
            Q+         ++   +    K++ L++++ +       +++       L  L++     
Sbjct: 976  QICTRLAIAFPDRRLLQYDCGKLQKLDLLLREIVPAGHRVLIFTQMTRVLDILEQFLNIH 1035

Query: 87   -----AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++     + +N+ + IP+      S G G+NL  G + ++F+   W+
Sbjct: 1036 GYRYLRLDGATKVEQRQLLTERFNQDERIPVFILSTRSGGLGINLT-GADTVIFYDSDWN 1094

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +   Q        R  + G  R V +Y LI++ T++  +L+R   K  +  +++  
Sbjct: 1095 PQLDAQA-----QDRSHRIGQTRDVHIYRLISEYTVESNMLKRANQKRMLDKIVIQG 1146


>gi|213402301|ref|XP_002171923.1| TATA-binding protein-associated factor MOT1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999970|gb|EEB05630.1| TATA-binding protein-associated factor MOT1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1915

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 26/185 (14%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-- 83
            A K     QL        E       +   +          +   +++       L    
Sbjct: 1672 APKLTALRQLLLECNIGTENDSALGANGGTVG------SAVSEHRVLIFCQLKDMLDIVE 1725

Query: 84   ---LQKAFPQGRTL--------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
               L+K  P    L        +K    +  +N +  I +L       G GLNL  G + 
Sbjct: 1726 NDVLRKTMPSVTYLRLDGSVDPNKRQEVVTRFNSDPSIDVLLLTTHVGGLGLNLT-GADT 1784

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+     Q ++R       + G K+ V VY LI + T++E ++   + K  + 
Sbjct: 1785 VIFVEHDWNPMRDLQAMDR-----AHRIGQKKVVNVYRLITRGTLEEKIMGLQQFKLNVA 1839

Query: 192  DLLLN 196
              ++N
Sbjct: 1840 STIVN 1844


>gi|20151803|gb|AAM11261.1| RH13158p [Drosophila melanogaster]
          Length = 1027

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|17737463|ref|NP_523719.1| imitation SWI, isoform A [Drosophila melanogaster]
 gi|24653132|ref|NP_725203.1| imitation SWI, isoform B [Drosophila melanogaster]
 gi|24653134|ref|NP_725204.1| imitation SWI, isoform C [Drosophila melanogaster]
 gi|6647560|sp|Q24368|ISWI_DROME RecName: Full=Chromatin-remodeling complex ATPase chain Iswi;
           AltName: Full=CHRAC 140 kDa subunit; AltName:
           Full=Nucleosome-remodeling factor 140 kDa subunit;
           Short=NURF-140; AltName: Full=Protein imitation swi
 gi|439197|gb|AAA19868.1| ISWI protein [Drosophila melanogaster]
 gi|7303422|gb|AAF58479.1| imitation SWI, isoform A [Drosophila melanogaster]
 gi|21627326|gb|AAM68637.1| imitation SWI, isoform B [Drosophila melanogaster]
 gi|21627327|gb|AAM68638.1| imitation SWI, isoform C [Drosophila melanogaster]
 gi|206597326|gb|ACI15757.1| FI04427p [Drosophila melanogaster]
          Length = 1027

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|159467693|ref|XP_001692026.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158278753|gb|EDP04516.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 845

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA---RLQKAFPQGRT-LDKDPCTIQ 102
           K     K++ L  ++    A     +V     + L    RL      G T +D     + 
Sbjct: 466 KARTQCKMQVLSELLRGIGAVGERCVVVSTSTAALDLVGRLSTVRIDGATSVDGRQIIVD 525

Query: 103 EWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N+  +  +      + G GLNL  G N LV +   W+    QQ + RI      + G 
Sbjct: 526 NFNKLNMGQVFLLSTRAGGAGLNL-VGANHLVLYDSDWNPAMDQQAMARIW-----RDGQ 579

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +   VY ++   TI+E V QR   K+ +    +
Sbjct: 580 TKPCHVYRMLTTGTIEEKVYQRQLMKADLASATM 613


>gi|309365060|emb|CAP23772.2| CBR-BTF-1 protein [Caenorhabditis briggsae AF16]
          Length = 1653

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 23   FNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             + + K     QL     +  + ++      DE    L  + E       ++   + +  
Sbjct: 1397 TSKSGKMEALKQLLIECEICKNPDEEVAAEADE----LGGLNEVGQGHRALIFCQWKTSA 1452

Query: 82   ARLQKAFPQGR--------------TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQ 126
              + +A   G                +      +  +NE K I +L       G GLNL 
Sbjct: 1453 QLVSEALRSGEFGSVVSHLVLDGNVPVGDRMKMVNRFNEDKTIEVLILTTHVGGVGLNLT 1512

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+  +  Q I+R       + G  R V VY LI Q T++E V+   + 
Sbjct: 1513 -GADTVIFMDHDWNPMKDLQAIDR-----AHRLGQTRNVNVYRLITQGTVEEKVMSLAKF 1566

Query: 187  KSTIQDLLLNA 197
            K      L+ A
Sbjct: 1567 KLNTAQALIGA 1577


>gi|293630862|gb|ACU12857.2| Mot1 [Brachypodium distachyon]
          Length = 2067

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVII---------------EKANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+                      +++     + L  ++K          
Sbjct: 1818 HSPKLVALQEILHECGIGSEISSPDASAAVGQHRVLIFAQHKAFLDIIEKDLFQSHMRSV 1877

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +K    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1878 TYLRLDGSVQTEKRFEIVKSFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1936

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q ++R       + G K+ V V+ LI + T++E V+   R K ++ + ++NA
Sbjct: 1937 KDLQAMDR-----AHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINA 1986


>gi|66360055|ref|XP_627205.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
 gi|46228613|gb|EAK89483.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
          Length = 1371

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +Y   + EL+C+  +  +     NS++  +  +      +     +   E    K + L 
Sbjct: 988  KYSFVKNELFCNSYISLQVDNLINSSNAYLHNISFFKKCI--VPPRRIIEDDCGKFQILS 1045

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DKDPCTIQEWNEG- 107
             ++ K        I+    +  L  L+              G T  D     +  +N   
Sbjct: 1046 RLLHKLFNEGHRCIIFTQMSKMLDVLESFINYRGYNYLRLDGSTKVDDRQKLVNRFNRDQ 1105

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I L  +   S G GLNL  G + ++F+   W+    +Q ++R       + G  R V +
Sbjct: 1106 RIYLFISSTRSGGVGLNLT-GADTVIFYDSDWNPAMDRQAMDRC-----HRIGQTRDVNI 1159

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y L+++ TI+E + ++   K  + D++++
Sbjct: 1160 YRLVSEWTIEESIFKKQLQKRLLDDVVVD 1188


>gi|114596225|ref|XP_001144256.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 1 [Pan troglodytes]
          Length = 1013

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|116195488|ref|XP_001223556.1| hypothetical protein CHGG_04342 [Chaetomium globosum CBS 148.51]
 gi|88180255|gb|EAQ87723.1| hypothetical protein CHGG_04342 [Chaetomium globosum CBS 148.51]
          Length = 836

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
              +++   F + L  L+                G   +     I ++N + K+ +    
Sbjct: 615 GHKVLIFSQFKTQLDILEDYCSELRKWPVCRIDGGVAQEDRRTEIHQFNTDPKLKIFLLS 674

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++  Q        R  + G  R V VY L  + T
Sbjct: 675 TRAGGQGINL-ASADTVILFDSDWNPQQDLQA-----QDRAHRIGQTRPVIVYRLATKGT 728

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 729 VEEGLLMSADAKRRLEKLVI 748


>gi|320583294|gb|EFW97509.1| helicase [Pichia angusta DL-1]
          Length = 794

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 35  LANGAVYYDE--EKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAF- 88
           +  G    D+   +   +V   KI  L  +++   K     ++V  +F   L  L+K   
Sbjct: 500 MFAGLCGVDDLRGELGSKVRSAKIILLVKLLKGIYKLKQEKVVVVSNFTQTLDVLEKLMN 559

Query: 89  ---------PQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFS 136
                          +     + ++N+       +      S G GLNL  G + L+ F 
Sbjct: 560 VLELPFTRLDGATPANLRDKIVSDFNKASWDMSFVFLLSAKSGGMGLNL-VGASRLILFD 618

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+     Q + R+      + G  R V VY L+    IDE + QR   K+++ D  L+
Sbjct: 619 NDWNPAVDLQAMARV-----HRDGQTRPVHVYRLLTAGCIDEKIFQRQLIKTSLSDKFLD 673


>gi|327198375|ref|YP_004306949.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
 gi|314912677|gb|ADT64068.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
          Length = 545

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 77/206 (37%), Gaps = 21/206 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   +L  ++    +   N  ++T++  Q              ++V   K +    
Sbjct: 335 KIYKEVLTKLVQEIDKVKLM-PNPLAETIRLRQATGNPSIL----TTQDVKSCKFERCIE 389

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           I+E+        ++  ++   +  L K   +        G T DK     +  N  K  +
Sbjct: 390 IVEECIQQGKSCVIFSNWEKVIEPLAKILSKTVKCNLVTGETADKFNEIEEFMNHRKASV 449

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G G  L    + ++F    W   E  Q  +R       + G K +V +Y L+
Sbjct: 450 ILGTIGALGTGFTLTK-ADTVIFLDSPWTRAEKDQAEDRC-----HRIGAKSSVTIYTLV 503

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T+DE +   +  K  + D +++ 
Sbjct: 504 AKGTVDERIEDLIERKGELADYIVDG 529


>gi|284034556|ref|YP_003384487.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283813849|gb|ADB35688.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 742

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K + + +     E+  A+ SA ++   +++   A        ++     K++ +  I+E
Sbjct: 503 EKIEIDDWVLPTAEDKAAYVSAVRSGNLMRMRQAA--------FEVAGSAKLERIAEIVE 554

Query: 65  KA--NAAPIIVAYHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWNE-GKIPLLFA 114
           +A  +   ++V  +F + L R+++A               +    + E+       +L +
Sbjct: 555 EAREDGRKVVVFSYFLTVLDRIEQAVGPTTGSIRGAVGPTERQRLVDEFTAAPGHAVLLS 614

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+Q   ++++     W     QQ + R       + G  R V V+ L+A++
Sbjct: 615 QIEAGGVGLNMQ-AASVVILAEPHWKPSTEQQAVAR-----AHRMGQIRTVQVHRLLAKD 668

Query: 175 TIDELVLQRLRTKSTIQDL 193
           T+D+ + +    K  + D 
Sbjct: 669 TVDDRIREVQEHKRLLFDE 687


>gi|190406613|gb|EDV09880.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 853

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|42742173|ref|NP_116696.2| Irc5p [Saccharomyces cerevisiae S288c]
 gi|84028283|sp|P43610|IRC5_YEAST RecName: Full=Uncharacterized ATP-dependent helicase IRC5; AltName:
           Full=Increased recombination centers protein 5
 gi|285811936|tpg|DAA12481.1| TPA: Irc5p [Saccharomyces cerevisiae S288c]
          Length = 853

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|71400983|ref|XP_803224.1| transcription activator [Trypanosoma cruzi strain CL Brener]
 gi|70865998|gb|EAN81778.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1038

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 42/232 (18%)

Query: 8   QRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHWKE 50
           QR+ Y  +  ++ EA N AS           +   ++ N     D               
Sbjct: 411 QRKWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIV 470

Query: 51  VHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQK---------AFPQGRT--L 94
            H  K+  L+ ++     EK     +++   F + L  L+              G T   
Sbjct: 471 KHSGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGY 530

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+D   +  +N       +      + G G+NLQ   ++++ +   W+ +   Q      
Sbjct: 531 DRDAQ-MAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVI-YDSDWNPQMDLQA----- 583

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R  + G KR V VY  I + T++E + +R   K  +  +++   + +   
Sbjct: 584 QDRAHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGRMQGRG 635


>gi|209945994|gb|ACI97228.1| okra [Drosophila melanogaster]
          Length = 167

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 32  MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 90

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 91  ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 144

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y L+A  +I+E +LQR   K 
Sbjct: 145 YIYRLVASGSIEEKILQRQTHKK 167


>gi|294955608|ref|XP_002788590.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239904131|gb|EER20386.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 857

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 29/205 (14%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL----EVIIEK 65
            G++ +  N A+      +L N      +    K           KI+AL    E + + 
Sbjct: 641 DGDDADDGNLAACMSGLRELQNDPRLPRKHSILKRAPVANFESSSKIEALVAEVEAMRKA 700

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW---NEGKIPLL 112
              A  +V   F S L   Q    +             L      ++ +   +    PLL
Sbjct: 701 DGEAKGLVFSSFVSLLELCQYRLHKAGITTLILHGELPLPLRAKVMKTFVESSADTCPLL 760

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNLQ   N +     WW+    QQ  +R       + G  + V V  ++ 
Sbjct: 761 LISLMSGGEGLNLQV-ANHVFLLDPWWNPAVEQQATQR-----AHRLGQSKRVQVLKMLT 814

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
            +TI++ ++     K  +   +++ 
Sbjct: 815 HDTIEDRIVALQEKKRAVCRGIIDG 839


>gi|151940802|gb|EDN59189.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 853

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|260549505|ref|ZP_05823723.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
 gi|260407298|gb|EEX00773.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
          Length = 72

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 57/68 (83%)

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           FFS WWDLE++QQ+IERIG TRQ QAG+ R V++Y++IA++T+DE+V++R  +K  +QDL
Sbjct: 2   FFSHWWDLEQYQQIIERIGPTRQAQAGYDRPVYIYHIIAKDTMDEIVMERRESKREVQDL 61

Query: 194 LLNALKKE 201
           L+ A+KK 
Sbjct: 62  LMEAMKKR 69


>gi|255954897|ref|XP_002568201.1| Pc21g11700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589912|emb|CAP96067.1| Pc21g11700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1671

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1358 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1417

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + + +N + +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1418 TKVESRQMLTERFNSDPRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1476

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1477 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1517


>gi|196010573|ref|XP_002115151.1| hypothetical protein TRIADDRAFT_28849 [Trichoplax adhaerens]
 gi|190582534|gb|EDV22607.1| hypothetical protein TRIADDRAFT_28849 [Trichoplax adhaerens]
          Length = 849

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 26/215 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDE 54
           K Y    +     L        +  +  ++  +  N    ++       E          
Sbjct: 252 KLYKALLQRNIESLT-NEASKTSLMNMLIQLRKCVNHPYLFNGIEPEPFEIGDHLINASG 310

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQ 102
           K+  L+ ++   K+    +++       L  LQ              G    ++    IQ
Sbjct: 311 KLFLLDKLLPYLKSRGHKVLIFSQMTRMLDILQDYLSYKDYNYERLDGSVRGEERYLAIQ 370

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  + +      + G GLNL    + ++FF   ++ +   Q   R       + G  
Sbjct: 371 NFTDPDVFVFILSTKAGGVGLNL-VAADTVIFFDSDFNPQNDIQAAARC-----HRIGQT 424

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +   +AQ+T++E++L+R   K  + D ++  
Sbjct: 425 KPVKIIRFVAQSTVEEIILKRAEAKLKLTDAVIEG 459


>gi|25144179|ref|NP_498468.2| yeast ISW (imitation SWI) homolog family member (isw-1)
           [Caenorhabditis elegans]
 gi|21264515|sp|P41877|ISW1_CAEEL RecName: Full=Chromatin-remodeling complex ATPase chain isw-1;
           AltName: Full=Nucleosome-remodeling factor subunit isw-1
 gi|16950408|gb|AAA50636.2| Yeast isw (imitation swi) homolog protein 1 [Caenorhabditis
           elegans]
          Length = 1009

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N    +D     
Sbjct: 362 VKVYVGLSKMQREWYTKVLMKDIDIINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 421

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++   F+  L  L+             
Sbjct: 422 PPFTTDQHLVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRL 481

Query: 90  QGRTLDKD-PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 482 DGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQSDLQ 540

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI +NT+DE ++++   K  + ++++ 
Sbjct: 541 AMDR-----AHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQ 585


>gi|315048045|ref|XP_003173397.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
 gi|311341364|gb|EFR00567.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
          Length = 767

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLF 113
           +    +++   F   L  L+    Q R              D+        ++    +  
Sbjct: 537 SKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNSDPDYRIFL 596

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 597 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 650

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            TI++ +L+R  +K  ++ L++   K
Sbjct: 651 GTIEQTLLERAGSKRRLEKLVIQKGK 676


>gi|296478735|gb|DAA20850.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a5 [Bos taurus]
          Length = 1052

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|70950861|ref|XP_744718.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524786|emb|CAH76731.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1330

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
            L    +  DE +        KI  LE ++ +       +++       L  L        
Sbjct: 844  LCCEPIDKDEYRERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 903

Query: 86   ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      T +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 904  FKHQRLDGTMTKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 962

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 963  PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 1017

Query: 201  E 201
            +
Sbjct: 1018 K 1018


>gi|144369229|dbj|BAF56217.1| OsRad54 [Oryza sativa Japonica Group]
          Length = 980

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    + ++N+      +      + G GLNL  GGN L+ F   W+    
Sbjct: 635 RLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNPAND 693

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +Q   R+      + G K+ V++Y  ++  TI+E V QR  +K  +Q ++
Sbjct: 694 KQAAARVW-----RDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVI 738


>gi|73977788|ref|XP_867147.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 5 [Canis
           familiaris]
          Length = 1056

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 40/235 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++   + +
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGEAK 638


>gi|308509388|ref|XP_003116877.1| CRE-BTF-1 protein [Caenorhabditis remanei]
 gi|308241791|gb|EFO85743.1| CRE-BTF-1 protein [Caenorhabditis remanei]
          Length = 1668

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 71/200 (35%), Gaps = 28/200 (14%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            D+  +   A +   K     QL     +  + +       DE    L  + E       +
Sbjct: 1406 DILAKARTARSG--KMEALKQLLIECEICKNPDDEVLPEADE----LGGLNEAGPGHRAL 1459

Query: 73   VAYHFNSDLARLQKAFPQGR--------TLDKDP------CTIQEWNEGK-IPLLFAHPA 117
            +   + +    +  A   G          LD D         +  +NE K I +L     
Sbjct: 1460 IFCQWKTSAKLVSNALSSGEFGSVVSHLVLDGDVPAGDRMKMVNRFNEDKTIDVLILTTH 1519

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G GLNL  G + ++F    W+  +  Q I+R       + G  R V VY LI Q T++
Sbjct: 1520 VGGVGLNLT-GADTVIFLDHDWNPMKDLQAIDR-----AHRLGQTRNVNVYRLITQGTVE 1573

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E V+   + K      L+ A
Sbjct: 1574 EKVMSLAKFKLNTAQALIGA 1593


>gi|311262519|ref|XP_003129222.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 [Sus scrofa]
          Length = 1052

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|293342854|ref|XP_002725339.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5-like [Rattus norvegicus]
          Length = 1046

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 208 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 267

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 268 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 327

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 328 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 386

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 387 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 431


>gi|157427958|ref|NP_001098886.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Bos taurus]
 gi|157279332|gb|AAI53226.1| SMARCA5 protein [Bos taurus]
          Length = 1052

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|146419456|ref|XP_001485690.1| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 32/206 (15%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y +   E     +    E F S     + ++  NG                KI+    ++
Sbjct: 884  YDEEAIEDLFSPKSRAPEKFTSTDIISRLIEETNGF-----------TPSTKIEKCIELV 932

Query: 64   EK----ANAAPIIVAYHFN--SDLARL---QKAFPQGR-----TLDKDPCTIQEWNEGKI 109
             +    +    IIV   F    DL +L   +K  P  R     +LD    TI+ + +G  
Sbjct: 933  NQIRTKSLEEKIIVFSQFTTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGLT 992

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     +   GL L    N ++    +W+    +Q ++R       + G +R VFV+ 
Sbjct: 993  QVLLISLRAGNVGLTLTC-ANHVILMDPFWNPFVEEQAMDR-----AHRIGQQREVFVHR 1046

Query: 170  LIAQNTIDELVLQRLR-TKSTIQDLL 194
            ++  +TI+  +++  +  K  +Q+ L
Sbjct: 1047 ILLNDTIEGRIMELQKYKKEMVQNAL 1072


>gi|297293442|ref|XP_002804257.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like [Macaca
           mulatta]
          Length = 1052

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|50290775|ref|XP_447820.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527131|emb|CAG60769.1| unnamed protein product [Candida glabrata]
          Length = 844

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K++ L+ +          I++   F   L  L+               G   +    
Sbjct: 593 SSGKLQMLQKLAIPLIKKGHKILIFSQFVGMLDLLEDWSELNSFNSLRIDGGVDNESRKE 652

Query: 100 TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N+      +      + G G+NL    + ++ F   W+ +   Q ++R       
Sbjct: 653 YIDEFNKKGDDHQIFLLSTRAAGLGINL-VAADTVIIFDSDWNPQVDLQAMDRC-----H 706

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  + V VY     NTI+ ++L R   K  ++ +++   K
Sbjct: 707 RIGQTKPVIVYRFCCDNTIEHVILTRAVNKRKLERMVIQMGK 748


>gi|325118669|emb|CBZ54220.1| hypothetical protein NCLIV_046520 [Neospora caninum Liverpool]
          Length = 1703

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 52   HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDK 96
               KI+AL      I  +      +V   F S L  ++    +G             + +
Sbjct: 1529 SSTKIEALYQELLDIEREDTTVKSLVFSQFCSMLDLIEWRLKKGGIHCAKLVGSMSIVSR 1588

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    N+  + +L     + G GLNLQ   + +     WW+     Q I+R      
Sbjct: 1589 SNVLYAFNNDPSLKVLLISLKAGGEGLNLQI-ASRIFLMDPWWNPAAEMQAIQR-----A 1642

Query: 157  RQAGF-KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  ++ V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 1643 HRIGQRQKEVIAVRFIAEKTIEERILQLQEKKQLVFDGTVGA 1684


>gi|330846201|ref|XP_003294935.1| hypothetical protein DICPUDRAFT_85378 [Dictyostelium purpureum]
 gi|325074496|gb|EGC28539.1| hypothetical protein DICPUDRAFT_85378 [Dictyostelium purpureum]
          Length = 2294

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ + +++ K        ++       L   ++               
Sbjct: 1188 PDKRLVQYDCGKLQEMAILLRKLKNGGHRALIFTQMTRMLDIFEEFLNIHGYTYLRLDGS 1247

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++K     + +N + KI L      S G GLNL  G + ++F+   W+     Q  +R
Sbjct: 1248 TKIEKRQALTERFNTDPKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPSMDAQAQDR 1306

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI  ++I+E +L++   K  + ++++ A
Sbjct: 1307 C-----HRIGQTREVNIYRLITMHSIEENILKKSNQKRQLDNMVIKA 1348


>gi|302796603|ref|XP_002980063.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
 gi|300152290|gb|EFJ18933.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
          Length = 1274

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQG 91
           D  +        K+  L+ +  K  A    +++   F   L  L+              G
Sbjct: 576 DAVQKTLVEASGKLLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYKNWNYERIDG 635

Query: 92  RTLDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           +    D  + I  +N    KI        + G G+NL    + +V +   W+     Q +
Sbjct: 636 KVSGADRQSRIDRFNAPGSKIFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHADMQAM 694

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            R       + G    V +Y LI + TI+E ++Q  + K  ++ L++  +K + +
Sbjct: 695 AR-----AHRMGQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVVGRMKTQIL 744


>gi|291233872|ref|XP_002736874.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Saccoglossus kowalevskii]
          Length = 678

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 21/166 (12%)

Query: 46  KHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           K  +     K++ L+ I+      ++  +++  ++   L   +K                
Sbjct: 423 KGVQPELSGKMQVLDYILAVTRTTSSDKVVLVSNYTQTLDLFEKLCHNRGYLYVRLDGSM 482

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           ++ K    ++ +N       +      + G GLNL  G N LV F   W+     Q + R
Sbjct: 483 SIKKRAKMVERFNNPSSAEYIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMAR 541

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G K+  ++Y L++  TI+E + QR   K  +   +++
Sbjct: 542 VW-----RDGQKKQCYIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 582


>gi|207345617|gb|EDZ72381.1| YFR038Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 853

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT 100
              K++ L+ +I    +    +++   F + L  ++              G   ++    
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVSNETRKD 660

Query: 101 -IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    K  +      + G G+NL  G + +V F   W+ +   Q ++R       
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQVDLQAMDRC-----H 714

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|325091990|gb|EGC45300.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           H88]
          Length = 1092

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+           +       +     
Sbjct: 591 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQK 650

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 651 MVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 704

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 705 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 747


>gi|145349626|ref|XP_001419229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579460|gb|ABO97522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 983

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 21/160 (13%)

Query: 50  EVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDK 96
           E H  K   L  ++          I++  ++   L  +     ++ +P  R      + K
Sbjct: 529 EEHSGKFAVLARLLANLRAETKDRIVIISNYTQTLDLVGNMCRERNYPFVRLDGSTSIGK 588

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++++N+      +      + G G+NL  GGN LV F   W+    +Q   R    
Sbjct: 589 RQKLVKQFNDPTSNSFVFLLSSKAGGCGINL-IGGNRLVLFDPDWNPANDKQAAARCW-- 645

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G K+  ++Y  +A  TI+E V QR  +K ++Q+++
Sbjct: 646 ---RDGQKKKCYLYRFLAAGTIEEKVFQRQLSKESLQNVV 682


>gi|134077641|emb|CAK45712.1| unnamed protein product [Aspergillus niger]
          Length = 716

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARL-----QKAFPQGR--- 92
           EK W  +   KI+    I+     +      I+   F S L  L     ++ +   R   
Sbjct: 496 EKTW--MSSAKIEKAMEILRDVYHREGNEKTIIFSQFTSLLDLLEIPIARQGWDYRRYDG 553

Query: 93  ---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q ++
Sbjct: 554 SMRPADRNTSVMDFTDNEDCRIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYVEEQAVD 612

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R       + G  R V ++ ++ ++T+++ +L+    K  + +  L+
Sbjct: 613 R-----AHRIGQVRPVQIHRIVVKDTVEDRILELQDKKRELVEGALD 654


>gi|40254124|ref|NP_444354.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Mus musculus]
 gi|55977469|sp|Q91ZW3|SMCA5_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5; AltName:
           Full=Sucrose nonfermenting protein 2 homolog;
           Short=mSnf2h
 gi|16551316|gb|AAL25793.1|AF375046_1 ATP-dependent chromatin remodeling protein SNF2H [Mus musculus]
 gi|31419851|gb|AAH53069.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Mus musculus]
          Length = 1051

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 588 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 632


>gi|328861599|gb|EGG10702.1| hypothetical protein MELLADRAFT_22404 [Melampsora larici-populina
           98AG31]
          Length = 1154

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKD 97
            V+  K+  L+ ++ +  A    +++             + S    + +        ++ 
Sbjct: 463 VVNSGKMILLDKLLTRLKAEGHRVLIFSQMVRMLDIMSDYMSLRGYIFQRLDGTVASEER 522

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N    P         + G G+NL    + ++ F   W+ +   Q + R     
Sbjct: 523 RKAIGHFNAPDSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR----- 576

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K  V VY L+ ++T++E VL+R + K  ++  ++N +
Sbjct: 577 AHRIGQKNHVNVYRLVTKDTVEEDVLERAKRKMILEYAIINQM 619


>gi|168025225|ref|XP_001765135.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162683722|gb|EDQ70130.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 793

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
              K+ AL  ++  A         +V   F+  L  L+                 T  K 
Sbjct: 617 SSAKVDALINLLVAAREKDPTEKSVVFSQFSQMLNCLEGPLADVGFRFVRLDGSMTSKKR 676

Query: 98  PCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +  +         +      + G GLNL    + +     WW+    +Q ++R+   
Sbjct: 677 QAALTAFRSKDPDSPTIFLLSLKAAGVGLNL-VAASRVYMVDPWWNPAVEEQAMDRV--- 732

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R V V  LI  +TI++ +L+    K  +      
Sbjct: 733 --HRLGQTRDVTVVRLIVTDTIEDRILELQERKRELATSAFE 772


>gi|38233618|ref|NP_939385.1| SNF2/RAD54 family protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38199878|emb|CAE49544.1| SNF2/RAD54 family protein [Corynebacterium diphtheriae]
          Length = 1029

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 67/189 (35%), Gaps = 24/189 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEKA--NAAPIIVAYHFNS 79
             S   K  Q+ N   ++  +     +       K+  L  +I  A  +   +++   + +
Sbjct: 823  LSALTKIKQICNHPAHFLGDGSAMTIKGKHRSGKVAELMNLINDAVDSDQKLLIFTQYRA 882

Query: 80   DLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQY 127
                L                 G +       ++E+      P +     + G GLNL  
Sbjct: 883  FGDLLVPYLSDYFGTTIPFLHGGVSKTGRDRMVEEFQTPDGPPAMILSLKAGGTGLNLTN 942

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +I+V    WW+     Q  +R       + G ++ V VY +I   T++E +   L  K
Sbjct: 943  -ASIVVHMDRWWNPAVENQATDR-----AFRIGQRKDVTVYKMITAGTLEESIQDILDGK 996

Query: 188  STIQDLLLN 196
            + +   +++
Sbjct: 997  TQLASAVVS 1005


>gi|255072671|ref|XP_002500010.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515272|gb|ACO61268.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 800

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 41  YYDEEKHWKEVHDE----KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKA------- 87
           Y D        HDE    K+  L  +++         ++   + S L  + +A       
Sbjct: 633 YPDPSDPRVPAHDEAMSGKLAVLIRMLQGMRRGIDKTVIVSGYTSTLDIIAEACLVMGGK 692

Query: 88  ---FPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     ++    +  +N G+   +      + G GLNL  G N LV F   W+   
Sbjct: 693 VSRLDGSVPPNQRVPLVNSFNAGRGGDVFLLSTKAGGVGLNL-VGANRLVLFDSDWNPAN 751

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             Q + R+      + G KR V +Y L++  T++E + QR   K  +   +
Sbjct: 752 DLQALARVW-----RDGQKRPVTIYRLVSTGTVEEKIFQRQMLKGDVASCM 797


>gi|47217344|emb|CAG11049.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 985

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 342 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 401

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 402 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 461

Query: 90  QGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 462 DGQTPHEERQISINAFNEPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 520

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  +++ 
Sbjct: 521 AMDR-----AHRIGQQKQVRVFRYITENTVEERIVERAEMKLRLDSIVIQ 565


>gi|218191385|gb|EEC73812.1| hypothetical protein OsI_08529 [Oryza sativa Indica Group]
          Length = 1765

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWN-EGKIPLLF 113
           K+     ++       L  L++             G T  ++  T+ Q +N   K  L  
Sbjct: 813 KSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGSTQPEERQTLMQRFNTNPKFFLFI 872

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               S G G+NL  G + ++F+   W+    QQ  +R       + G  R V +Y LI++
Sbjct: 873 LSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-----HRIGQTREVHIYRLISE 926

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TI+E +L++   K  + DL++ 
Sbjct: 927 STIEENILKKANQKRALDDLVIQ 949


>gi|115457136|ref|NP_001052168.1| Os04g0177300 [Oryza sativa Japonica Group]
 gi|113563739|dbj|BAF14082.1| Os04g0177300 [Oryza sativa Japonica Group]
          Length = 664

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--P 70
           C L    I      +   +C          D E +WK     K+  L  I+E        
Sbjct: 465 CPLCRSPITKSELITLPSQCR------FQVDPENNWK--DSCKVIKLIKILEGLQEKREK 516

Query: 71  IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP-LLFAHPASC 119
            IV   F S    L+  F Q                    ++E++E K   +L     + 
Sbjct: 517 SIVFSQFTSFFDLLEVPFNQKGIKFLRFDGKLSQKHREKVLKEFSESKDKLVLLMSLKAG 576

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    N +     WW+    +Q I RI      + G KRAV V   I ++T++E 
Sbjct: 577 GVGLNLTAASN-VFLMDPWWNPAVEEQAIMRI-----HRIGQKRAVQVRRFIVKDTVEER 630

Query: 180 VLQRLRTKS 188
           + +    K 
Sbjct: 631 MQKVQACKQ 639


>gi|325651836|ref|NP_003592.3| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Homo sapiens]
 gi|57014128|sp|O60264|SMCA5_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5;
           Short=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5; AltName: Full=Sucrose
           nonfermenting protein 2 homolog; Short=hSNF2H
 gi|2967452|dbj|BAA25173.1| hSNF2H [Homo sapiens]
 gi|18606276|gb|AAH23144.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Homo sapiens]
 gi|119625476|gb|EAX05071.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Homo sapiens]
 gi|168275690|dbj|BAG10565.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [synthetic construct]
 gi|325463895|gb|ADZ15718.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [synthetic construct]
          Length = 1052

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|242795848|ref|XP_002482676.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218719264|gb|EED18684.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1210

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 28/187 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
           T K      G  Y D  K        K++ ++ ++E  K      ++       L  L+K
Sbjct: 746 THKLFSTTTG--YGDASK------SGKMQVVKALLELWKDTGHKTLLFAQHRIMLNILEK 797

Query: 87  -----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             + +    + E+N    I +        G G+NL  G + ++ 
Sbjct: 798 FVNTLSGFNYRRMDGDTPIHRRQLLVDEFNNSPDIHVFLLTTKVGGLGVNLT-GADRVII 856

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+     Q  ER       + G KR V +Y L+   TI+E +  R   K  + + +
Sbjct: 857 YDPDWNPSTDMQARERAW-----RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKV 911

Query: 195 LNALKKE 201
           L   K+ 
Sbjct: 912 LKDPKQR 918


>gi|218197711|gb|EEC80138.1| hypothetical protein OsI_21929 [Oryza sativa Indica Group]
 gi|222635083|gb|EEE65215.1| hypothetical protein OsJ_20361 [Oryza sativa Japonica Group]
          Length = 1309

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y    R       G ++   N     ++  +L   A   DE +      +   + LE 
Sbjct: 504 KNYEVLTRR-----SGGHVSLINV---VMELRKLCCHAFMTDEPEEPANSEEALRRLLES 555

Query: 61  ----VIIEKA------NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
                +++K           +++   F   L  L+              G+    +    
Sbjct: 556 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 615

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+     Q + R       +
Sbjct: 616 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AHR 669

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K T
Sbjct: 670 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGT 713


>gi|225555676|gb|EEH03967.1| DNA dependent ATPase [Ajellomyces capsulatus G186AR]
          Length = 1276

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+           +       +     
Sbjct: 770 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQK 829

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 830 MVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 883

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 884 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|145245695|ref|XP_001395110.1| helicase swr1 [Aspergillus niger CBS 513.88]
 gi|134079817|emb|CAK40951.1| unnamed protein product [Aspergillus niger]
          Length = 1711

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1377 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1436

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1437 TKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1495

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1496 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1536


>gi|121700232|ref|XP_001268381.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            clavatus NRRL 1]
 gi|119396523|gb|EAW06955.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1253

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 45   EKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG- 91
            EK W      ++ ++ L+ I  + ++   I+   F S L  L+          + +    
Sbjct: 1073 EKTWVTSAKIEKTLEILQEIGNRDDSEKTIIFSQFTSLLDLLEVPIARRGWGYRRYDGSM 1132

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++   +   +     ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 1133 KPADRNSAVLDFTDNADCKIMLVSLKAGNSGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1190

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALK 199
                  + G +R V ++ ++ Q T+++ +L+    K  + +  L+  ALK
Sbjct: 1191 ----AHRIGQRREVQIHRVLVQKTVEDRILELQDKKRELIEGALDEKALK 1236


>gi|328861412|gb|EGG10515.1| hypothetical protein MELLADRAFT_47048 [Melampsora larici-populina
           98AG31]
          Length = 676

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 19/153 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
           KI+ L+ ++ +  +  + I++   F   LA L+K                   D+ P   
Sbjct: 480 KIEKLKELVIRLKSKGSRILIFSQFTQMLAILEKVMECIGVKFLILTGSTSVGDRQPLVD 539

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  N+  I +      + G GLNL    + +V F   ++        +R    R  + G 
Sbjct: 540 EFTNDESITVFLLSTKAGGLGLNL-MAADTVVIFDQDFNPH-----NDRQAEDRAYRLGQ 593

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           KR V V   + ++TI+E +LQ  +TK  +   +
Sbjct: 594 KRDVHVIKFVTKHTIEEDILQLAQTKIALDTSV 626


>gi|300123117|emb|CBK24124.2| unnamed protein product [Blastocystis hominis]
          Length = 1117

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D     I  +N GK+        + G GLNL    + ++ F   W+ +   Q   R    
Sbjct: 445 DLRQQKIDRFNSGKVFAFLLSTKAGGLGLNLT-AADTVIIFDNDWNPQNDVQAEAR---- 499

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G ++ V V+ L+ + T +E +  R   K  +   +  +
Sbjct: 500 -AHRIGQQKPVQVFRLVTKGTYEEDLFSRASKKLGLSQAVFES 541


>gi|195154762|ref|XP_002018288.1| GL16841 [Drosophila persimilis]
 gi|194114084|gb|EDW36127.1| GL16841 [Drosophila persimilis]
          Length = 2139

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
           K++ L+ ++ +   +   +++       L  L+              G T  +    + +
Sbjct: 594 KLQTLDRLLRQLKVDGHRVLIFTQMTKMLDVLEAFLNHHGHIYLRLDGSTRVEQRQILME 653

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 654 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 707

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 708 TRDVHIYRLVSEKTIEVNILKKANQKRMLSDMAIEG 743


>gi|310639769|ref|YP_003944527.1| snf2-like protein [Paenibacillus polymyxa SC2]
 gi|309244719|gb|ADO54286.1| SNF2-like protein [Paenibacillus polymyxa SC2]
          Length = 987

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNS-ASKTVKCLQLANGAV--------------YYDEE 45
             Y +  +EL   +Q  E IE   +  S   +  QL +                 Y   +
Sbjct: 739 ALYDQIVKELMERMQKLEGIERKGAILSALTQLKQLCDHPALLTKGALLDAAASGYSQPD 798

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
                    K++ +  ++++        ++   +      LQ+   Q             
Sbjct: 799 LEAVISRSSKLERILAMVKELREEGERCLIFTQYIGMGQMLQQVLAQELQEPVLYLNGST 858

Query: 93  TLDKDPCTIQEWNE-----GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +       I ++        + P +      + G GLNL    N +  F  WW+     Q
Sbjct: 859 SKSARDRMIDQFQSHTLSPDEQPSVFILSLKAGGVGLNLT-AANHVFHFDRWWNPAVENQ 917

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +R       + G  + V V+  I+  T++E + + L +K  + D ++ + +
Sbjct: 918 ATDR-----AYRMGQTKDVQVHKFISLGTLEERIDEMLESKQQLSDQIITSTE 965


>gi|209945942|gb|ACI97202.1| okra [Drosophila simulans]
          Length = 168

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 33  MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 91

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 92  ESESFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 145

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y L+A  +I+E +LQR   K 
Sbjct: 146 YIYRLVASGSIEEKILQRQTHKK 168


>gi|49389246|dbj|BAD25208.1| putative SNF2 domain-containing protein [Oryza sativa Japonica Group]
          Length = 2057

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 92/258 (35%), Gaps = 67/258 (25%)

Query: 1    MKQYHKF-----QRELYCDLQGENIEAFNSASKTVK--------CLQLANGAVYYDEEKH 47
            +K Y KF     ++E+   ++   ++   S  K  +         L+L +  +    E  
Sbjct: 1725 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 1784

Query: 48   WKEV-------------------HDEKIKALEVIIEK---------------ANAAPIIV 73
               +                   H  K+ AL+ I+++                    +++
Sbjct: 1785 PDYLVDLLKEIGMGTGDELHDLHHSPKLVALQEILQECGIGSEISSPDASAAIGQHRVLI 1844

Query: 74   AYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
                 + L  ++K                     +K    ++ +N +  I +L       
Sbjct: 1845 FAQHKALLDIIEKDLFQSHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVG 1904

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+  +  Q ++R       + G ++ V V+ LI + T++E 
Sbjct: 1905 GLGLNLT-SADTLVFMEHDWNPMKDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEK 1958

Query: 180  VLQRLRTKSTIQDLLLNA 197
            V+   R K ++ + ++NA
Sbjct: 1959 VMSLQRFKVSVANAVINA 1976


>gi|114596221|ref|XP_517459.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 5 [Pan troglodytes]
 gi|114596223|ref|XP_001144488.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 4 [Pan troglodytes]
          Length = 1052

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|322791142|gb|EFZ15704.1| hypothetical protein SINV_11452 [Solenopsis invicta]
          Length = 843

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 17/181 (9%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLARLQ 85
                  +     +  D   +        ++ L   ++K +   ++V+Y+    DL  + 
Sbjct: 554 VLYNALSKTCMSQIKQDNNFNEYCGKVTILQTLLRNLKKTDEKLVLVSYYTQTLDLLEII 613

Query: 86  KAFPQGRTLDKDPCT--------IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
               + + L  D  T         +++N       +L     + G GLNL  G + LV F
Sbjct: 614 CDMEKLKFLRLDGSTPSSVRLKITEQFNTRTDNSKVLLLSAKAGGVGLNL-PGASRLVLF 672

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+     Q + RI      + G KR V++Y L+   TI+E + QR  +K+ + + ++
Sbjct: 673 DSDWNPASDMQAMARIW-----RDGQKRNVYIYRLLTTGTIEEKIYQRQISKANLSESVV 727

Query: 196 N 196
           +
Sbjct: 728 D 728


>gi|296195484|ref|XP_002745366.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 1
           [Callithrix jacchus]
          Length = 1052

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|224098058|ref|XP_002192409.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1
           [Taeniopygia guttata]
          Length = 1189

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL    N    +D     
Sbjct: 532 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 591

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 592 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 651

Query: 90  QGRTLDKD-------------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I  +N       +      + G G+NL    ++++ 
Sbjct: 652 DGQTPHEEREVGKLYVNKKSLSEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVIL 710

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 711 YDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 765

Query: 195 LN 196
           + 
Sbjct: 766 IQ 767


>gi|321259505|ref|XP_003194473.1| helicase [Cryptococcus gattii WM276]
 gi|317460944|gb|ADV22686.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 1848

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 60/246 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGA--VYYDEEKHWKE 50
            + Y +F R    +  G  IE    ASK              +L N    V   E + +KE
Sbjct: 1543 QLYDEFSRSKAAEEAGMEIEKP--ASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKE 1600

Query: 51   VHDE--------------KIKALEVII-------------EKANAAPIIVAYHFNSDLAR 83
            +  +              K++AL  ++             +      +++       L  
Sbjct: 1601 IQKKIGGGPGLHDLSHAPKMEALRQLLQDCGIGLPPDKLADDVTTHRVLIFCQLRPMLDI 1660

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            ++K                      K    +Q +N + +I +L    +  G GLNL  G 
Sbjct: 1661 IEKDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GA 1719

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G ++ V VY LI + T++E ++   R K  
Sbjct: 1720 DTVIFVDHDWNPMKDLQAMDR-----AHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLN 1774

Query: 190  IQDLLL 195
            I   ++
Sbjct: 1775 IASSVV 1780


>gi|157817975|ref|NP_001100889.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Rattus norvegicus]
 gi|149037939|gb|EDL92299.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 995

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 576


>gi|71024321|ref|XP_762390.1| hypothetical protein UM06243.1 [Ustilago maydis 521]
 gi|46101890|gb|EAK87123.1| hypothetical protein UM06243.1 [Ustilago maydis 521]
          Length = 986

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARL-- 84
              +C+ LA                  K+ +L   I  A+A    IV   F S L  +  
Sbjct: 788 LCNECIALATSHSQDLFASSSGSTKTRKMLSLLSQIRAADATEKTIVFSQFTSFLNIVEP 847

Query: 85  ---QKAFPQGR------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              +  F   R        +++    +  ++  + ++     +   GLNL    + ++  
Sbjct: 848 HLQRHGFKYVRYDGSMKPQERESALERIRSDASVTVILISFKAGSTGLNLT-SCSRVILM 906

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            LWW+ +  +Q  +R       + G  R V +Y L  ++T++E +L+    K  +    L
Sbjct: 907 DLWWNPQIEEQAFDR-----AHRLGQTRDVTIYKLSIKDTVEERILKLQEKKRALAKAAL 961

Query: 196 NALK 199
              K
Sbjct: 962 EGSK 965


>gi|327348564|gb|EGE77421.1| helicase swr1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1684

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1345 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1404

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1405 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1463

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1464 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1504


>gi|261205240|ref|XP_002627357.1| helicase swr1 [Ajellomyces dermatitidis SLH14081]
 gi|239592416|gb|EEQ74997.1| helicase swr1 [Ajellomyces dermatitidis SLH14081]
          Length = 1684

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1345 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1404

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1405 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1463

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1464 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1504


>gi|209877571|ref|XP_002140227.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209555833|gb|EEA05878.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1100

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 39/225 (17%)

Query: 7   FQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDE---------EKHW 48
            QR LY D+  +NI+A             +  ++  +  N    +D           +H 
Sbjct: 426 MQRTLYRDILSKNIDALQERDSGGRVRLINLAMQLRKACNHPYLFDGYEDKNEDPFGEHV 485

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKD 97
            E +  K+  L+ + +K   N + I++       L  L         +     G T  +D
Sbjct: 486 IE-NSGKMIMLDRLTKKLLQNGSRILIFSQMARILDILEDFCYMRKYKYCRIDGNTSTED 544

Query: 98  PCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             T I ++N+    I +      + G G+NL    +I++ +   W+ +   Q ++R    
Sbjct: 545 RDTQISDFNKPNSDISIFLLSTRAGGLGVNL-ATADIVIIYDSDWNPQVDLQAMDR---- 599

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V++Y L  +NTI+E +L+R   K  ++  ++   K
Sbjct: 600 -AHRIGQKKPVYIYRLFHENTIEEKILERANLKLQLESAIIQQGK 643


>gi|73977784|ref|XP_867131.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 3 [Canis
           familiaris]
          Length = 1034

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|83774735|dbj|BAE64858.1| unnamed protein product [Aspergillus oryzae]
          Length = 977

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  LQK                  +     
Sbjct: 627 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQS 686

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 687 MVDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 740

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 741 LGQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 783


>gi|326427538|gb|EGD73108.1| nucleotide excision repair protein [Salpingoeca sp. ATCC 50818]
          Length = 865

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 21/159 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI+AL      +    +    I+   F   L  L+    +G                
Sbjct: 692 SSTKIEALLEELTALQSDTHCIKSIIFSQFTQFLDLLEWRLQRGGIRCVKLDGRMSPASR 751

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N + +I +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 752 AAVIDAFNTKPEITVFLISLKAGGLALNLT-AASRVYITDPWWNPCAEAQAMDRI----- 805

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  R V V  LI +N+I+  + Q    K  + +  +
Sbjct: 806 HRLGQNRPVEVRRLIIENSIESRIDQLQEKKRLLFESTV 844


>gi|239611425|gb|EEQ88412.1| helicase swr1 [Ajellomyces dermatitidis ER-3]
          Length = 1684

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1345 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1404

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1405 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1463

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1464 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1504


>gi|73977790|ref|XP_867156.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 6 [Canis
           familiaris]
          Length = 1056

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|301777862|ref|XP_002924349.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like
           [Ailuropoda melanoleuca]
          Length = 1052

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|291401180|ref|XP_002716976.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5-like [Oryctolagus cuniculus]
          Length = 1051

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 588 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 632


>gi|255946808|ref|XP_002564171.1| Pc22g01270 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591188|emb|CAP97415.1| Pc22g01270 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1198

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 51   VHDEKIKALEVIIEKANAAPI----IVAYHFNSDLARLQ----------KAFPQGRTLDK 96
                KI     I++      +    I+   F S L  L+            F     L +
Sbjct: 999  FPSTKITKTLEILQANEDRGLEEKTIIFSQFTSLLDLLEVPLARRGWNHTRFDGSMNLKE 1058

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  + N+    ++     +   GLNL    + ++ F  +W+     Q ++R     
Sbjct: 1059 RNAAVTAFTNDPSCKIMLVSLKAGNSGLNL-VAASHVIMFDPFWNPYIEDQAVDR----- 1112

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R VFV+ L+ +NT+++ ++     K  +    L+
Sbjct: 1113 AHRIGQVRNVFVHRLLIENTVEDRIVTLQDQKRELISGALD 1153


>gi|58263400|ref|XP_569110.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57223760|gb|AAW41803.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1277

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF 88
            LQ  N  V  ++      +   K+K L      IIE+  +  IIV   F   +  L   F
Sbjct: 1079 LQAVNDEVSIED-----VLPSTKMKKLGELIDAIIEQDPSQKIIVFSQFVEYID-LCSIF 1132

Query: 89   PQGRTL-----------DKDPCTIQEWN----EGKIP-LLFAHPASCGHGLNLQYGGNIL 132
             + R +           D+   TI+++N    E K P  L       G GLNL    N +
Sbjct: 1133 LRRRNIPHAKYVGSMKQDEREDTIKDFNRPMEEDKSPRCLLMSLKCGGVGLNLCI-ANHV 1191

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +   L W+     Q ++R       + G  R V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1192 ICLDLAWNAATENQAVDR-----AHRIGQTREVVVHRLVVENTIDQRLMELQQQKQALSD 1246

Query: 193  LLL 195
              +
Sbjct: 1247 GAM 1249


>gi|317156769|ref|XP_001825991.2| DNA repair protein Rhp26/Rad26 [Aspergillus oryzae RIB40]
          Length = 1192

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  LQK                  +     
Sbjct: 736 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQS 795

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 796 MVDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 849

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 LGQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 892


>gi|294659915|ref|XP_462354.2| DEHA2G18722p [Debaryomyces hansenii CBS767]
 gi|199434332|emb|CAG90861.2| DEHA2G18722p [Debaryomyces hansenii]
          Length = 834

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 17/193 (8%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
           C++  + ++A N ++   +  +    +V   +          KIK +  I+        I
Sbjct: 614 CEICMKRLDANNQSTDGTRFCKACGESVKVPKHHEDDYYVSSKIKQVLEILMTNRDRKTI 673

Query: 73  VAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEW------NEGKIPLLFAHPASCGH 121
           +   F S    L      K F             + +      N+  + +L         
Sbjct: 674 IFSQFPSLFKVLGDTLSTKGFKILTYDGSMDIKARNFALNSLKNDPDMNVLLCSLKCGSV 733

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    + ++ F  WW+ +  +Q I+R+      + G  + V +Y L  +NT+++ +L
Sbjct: 734 GLNLTC-ASQVILFDPWWNPQIQEQAIDRV-----YRIGQTKPVDIYELTVKNTVEDNIL 787

Query: 182 QRLRTKSTIQDLL 194
           +  +TK  + + +
Sbjct: 788 KLQKTKRQLANAV 800


>gi|270014262|gb|EFA10710.1| domino [Tribolium castaneum]
          Length = 2260

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 19/189 (10%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            A   ++      ++A+  V    +    +    K++ L+ ++ K  +    +++      
Sbjct: 1433 AACLSAPATSLHRIASAMVTQFPDPRLIQYDCGKLQTLDKLLRKLKSEGHRVLIFTQMTK 1492

Query: 80   DLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L+                  +D+    ++ +N + +I        S G G+NL  G
Sbjct: 1493 MLDVLEAFLNFHGHIYLRLDGTTKVDQRQLLMERFNGDTRIFAFILSTRSGGIGVNLT-G 1551

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+   W+     Q  +R       + G  R V +Y L+++ TI+E +L++   K 
Sbjct: 1552 ADTVIFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLVSERTIEENILKKANQKR 1606

Query: 189  TIQDLLLNA 197
             + DL +  
Sbjct: 1607 LLGDLAIEG 1615


>gi|57096815|ref|XP_532676.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 1 [Canis
           familiaris]
          Length = 1052

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|50557268|ref|XP_506042.1| YALI0F30261p [Yarrowia lipolytica]
 gi|49651912|emb|CAG78855.1| YALI0F30261p [Yarrowia lipolytica]
          Length = 1353

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 67/175 (38%), Gaps = 27/175 (15%)

Query: 43   DEEKHWKEVHDEKI----------KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
            + EK   E  DEK+          + LE I E+      I+   F S +  +        
Sbjct: 1147 EAEKQKIEEEDEKLPPSAKALRCVELLEKIKEENPGEKTIIFSQFVSFMNLIGDELDNAG 1206

Query: 93   ----------TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        D+    +  +  +  I +L     +   GL L    ++++    +W+ 
Sbjct: 1207 FEYLRYEGSMHADERSRAVTAFREDPSISVLLISLKAGNVGLTLTAANHVIIM-DPFWNP 1265

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +Q ++R       + G +R V V+ ++ + T+++ +L+  + K  + +  L+
Sbjct: 1266 YVEEQAMDR-----AHRIGQQRDVTVHKIVIEQTVEDRILELQKRKREMIESALD 1315


>gi|146419691|ref|XP_001485806.1| hypothetical protein PGUG_01477 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1895

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 80/200 (40%), Gaps = 21/200 (10%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
            Y  +   +I + N A K +    L     +  D+  +  +  ++K++         +   
Sbjct: 1620 YLRINKSDIRSINHAPKLLSLRTLLLECGIGVDDSDYIGKGKNKKLQQQITAEGVISDHR 1679

Query: 71   IIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTI-QEWNE-GKIPLLFAHP 116
             ++       L  ++    +            G T  +D  +I +++NE   I +L    
Sbjct: 1680 ALIFCQLKDMLDIVENELLKKHLPSVTYMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTT 1739

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
               G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI ++T+
Sbjct: 1740 KVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITKHTL 1793

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E ++   + K  I   ++N
Sbjct: 1794 EEKIMGLQKFKMNIASTVVN 1813


>gi|39968181|ref|XP_365481.1| hypothetical protein MGG_02183 [Magnaporthe oryzae 70-15]
 gi|145013063|gb|EDJ97704.1| hypothetical protein MGG_02183 [Magnaporthe oryzae 70-15]
          Length = 1912

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++AL+ ++   +A     ++       L  L++             G 
Sbjct: 1574 PDKRLLQYDCGKLQALDRLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1633

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1634 TKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1692

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1693 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1733


>gi|298715262|emb|CBJ27911.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1021

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQE 103
             +++L  +    N    +V   F S L  +Q                 T  +    ++ 
Sbjct: 843 ALLQSLHELRRSGNGDKAVVFSQFTSFLDVIQPFLLADGFRLARLDGSMTNKQRQAELKR 902

Query: 104 WNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  GK      ++ A   + G G+NL    +  +    WW+     Q ++R+      + 
Sbjct: 903 F-AGKGGDGAEVMLASLMAAGTGINLTSANHCFI-ADPWWNASVESQAMDRV-----HRI 955

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           G  + V V  +++ +++++ +L+    K  +    L  LK + +
Sbjct: 956 GQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEV 999


>gi|302922109|ref|XP_003053398.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
 gi|256734339|gb|EEU47685.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
          Length = 1013

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 19/169 (11%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDP 98
           E+   K+K L  +I++   N   ++V   F+           L  +Q     G T   + 
Sbjct: 830 EMDSGKVKKLLELIQQYQENGDRVLVFSKFSRVIELLQEVLSLKGIQHRILMGNTNVSER 889

Query: 99  CT-IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            T I E+N+  +IP+      + G G+NL    N ++ F    + ++  Q        R 
Sbjct: 890 QTLIDEFNDDPEIPVFLLTTGAGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRA 943

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G KR V +  LIA +TI+EL+ +  + K  + + +  A++ E   V
Sbjct: 944 HRLGQKRDVEIIRLIASHTIEELIYKACQKKIELANKVTGAVEDEDAAV 992


>gi|125559347|gb|EAZ04883.1| hypothetical protein OsI_27065 [Oryza sativa Indica Group]
          Length = 821

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGR------ 92
           D   +       K++AL  ++ ++ +    +  ++   F   L  L+             
Sbjct: 634 DSSVNLDRPLSSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRL 693

Query: 93  ----TLDKDPCTIQEWN--EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               T  K    I+++       P +L A   + G G+NL    + +  F  WW+    +
Sbjct: 694 DGSMTAKKRSEVIRQFGCVGPDSPTVLLASLKAAGAGVNLT-AASTVYLFDPWWNPGVEE 752

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q ++R+      + G  + V V  LI +++I+E +L+    K  +
Sbjct: 753 QAMDRV-----HRIGQTKEVKVVRLIVKDSIEERMLELQERKKKL 792


>gi|295658318|ref|XP_002789720.1| helicase swr1 [Paracoccidioides brasiliensis Pb01]
 gi|226283023|gb|EEH38589.1| helicase swr1 [Paracoccidioides brasiliensis Pb01]
          Length = 1678

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1343 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1402

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1403 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1461

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1462 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1502


>gi|115473675|ref|NP_001060436.1| Os07g0642400 [Oryza sativa Japonica Group]
 gi|23237908|dbj|BAC16482.1| putative RUSH-1alpha [Oryza sativa Japonica Group]
 gi|50509930|dbj|BAD30251.1| putative RUSH-1alpha [Oryza sativa Japonica Group]
 gi|113611972|dbj|BAF22350.1| Os07g0642400 [Oryza sativa Japonica Group]
          Length = 821

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGR------ 92
           D   +       K++AL  ++ ++ +    +  ++   F   L  L+             
Sbjct: 634 DSSVNLDRPLSSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRL 693

Query: 93  ----TLDKDPCTIQEWN--EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               T  K    I+++       P +L A   + G G+NL    + +  F  WW+    +
Sbjct: 694 DGSMTAKKRSEVIRQFGCVGPDSPTVLLASLKAAGAGVNLT-AASTVYLFDPWWNPGVEE 752

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q ++R+      + G  + V V  LI +++I+E +L+    K  +
Sbjct: 753 QAMDRV-----HRIGQTKEVKVVRLIVKDSIEERMLELQERKKKL 792


>gi|58266612|ref|XP_570462.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110952|ref|XP_775940.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258606|gb|EAL21293.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226695|gb|AAW43155.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 818

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 21/175 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQK----------AFPQG 91
           ++     +  K   LE +++  N      I++  +    L  ++K               
Sbjct: 567 DRTVNCQYSGKFVVLERMLDHINHHTNDKIVLISNATQTLDLMEKLCRSKRYGYLRLDGS 626

Query: 92  RTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            ++ K    + ++N  E K  +      + G G+NL  G N LV F   W+    QQ + 
Sbjct: 627 MSVPKRSKIVAQFNQPESKEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPASDQQALA 685

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R+      + G K+  FVY      TI+E + QR   K  +   +++  +    H
Sbjct: 686 RVW-----RDGQKKECFVYRFQTTGTIEEKIFQRQCQKQNLSACVVDEAEDTARH 735


>gi|260942857|ref|XP_002615727.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
 gi|238851017|gb|EEQ40481.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
          Length = 343

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +K   +    K++ L  ++    AN    ++       L  L++               
Sbjct: 69  PDKQLLQYDCGKLQKLATLLHDLVANGHRALIFTQMTKVLDILEQFLNFRGYRYMRLDGA 128

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++      +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 129 TKIEDRQLMTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 187

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 188 C-----HRIGQMRDVHIYRFVSEYTIESNILKKANQKRQLDNVVIQ 228


>gi|168051599|ref|XP_001778241.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162670338|gb|EDQ56908.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1245

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
           +  K+  L+ ++ K +     +++   F   L  L+              G+    +   
Sbjct: 616 NSGKLLLLDKMMTKLHSQGHRVLIYSQFTRMLDILEDWLHLKKWGYERIDGKISGSERQI 675

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 676 RIDRYNSPNSTKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 729

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G +  V ++ L+ + TI+E ++Q  + K  ++ L++  +KKE I
Sbjct: 730 RLGQQNKVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRMKKENI 775


>gi|224044097|ref|XP_002190618.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1168

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------KDPCTIQEWNEGK 108
            L+ I         +V   + S L      LQ+   +  T+D      +    ++E+N   
Sbjct: 1005 LKTIQSHPEPQKSVVVSQWTSMLKVVAVHLQRLGLKCATVDGSVNPKQRMDVVEEFNNNP 1064

Query: 109  I--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                ++     + G GLNL  GGN L    + W+     Q  +RI      + G K+ V 
Sbjct: 1065 KGPQVMLVSLLAGGVGLNLT-GGNHLFLLDMHWNPALEDQACDRI-----YRVGQKKDVV 1118

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++  + + T++E +LQ  + K  +   +L+  K ET
Sbjct: 1119 IHRFVCEGTVEENILQLQKRKKGLAQQILSG-KGET 1153


>gi|148678936|gb|EDL10883.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Mus musculus]
          Length = 993

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 351 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 410

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 411 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 470

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 471 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 529

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 530 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 574


>gi|73977782|ref|XP_867119.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 2 [Canis
           familiaris]
          Length = 1046

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 404 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 463

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 464 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 523

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 524 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 582

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 583 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 627


>gi|291221939|ref|XP_002730974.1| PREDICTED: helicase, lymphoid specific-like [Saccoglossus
           kowalevskii]
          Length = 905

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT------LDKDPCTI 101
           D  + AL+          +++       L  L      + F   R       +D+     
Sbjct: 670 DRLLPALKE-----RGHKVLLFSQMTKMLDILGDYCFLRKFKTCRLDGTMSYVDRQEQIS 724

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    +      + G GLNL    + ++ +   W+ +   Q  +R       + G 
Sbjct: 725 TFNNDKDAFIFLLSTRAGGLGLNL-ASADTVIIYDSDWNPQSDLQAQDRC-----HRIGQ 778

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + V V+ L+ QNTID+ +++R   K  ++ ++++  K
Sbjct: 779 NKPVTVFRLVTQNTIDQKIVERASAKRKLEKMVIHQGK 816


>gi|222622221|gb|EEE56353.1| hypothetical protein OsJ_05476 [Oryza sativa Japonica Group]
          Length = 2095

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 46/227 (20%)

Query: 1    MKQYHKF-----QRELYCDLQGENIEAFNSASKTVK--------CLQLANGAVYYDEEKH 47
            +K Y KF     ++E+   ++   ++   S  K  +         L+L +  +    E  
Sbjct: 1804 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 1863

Query: 48   WKEVHDEKIKALEVI-------IEKANAAPIIVAYHFNSDLARLQK---------AFPQG 91
                 D  +  L+ I       +   + +P +VA      L  + +              
Sbjct: 1864 ----PDYLVDLLKEIGMGTGDELHDLHHSPKLVA------LQEILQECGIGVTYLRLDGS 1913

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +K    ++ +N +  I +L       G GLNL    + LVF    W+  +  Q ++R
Sbjct: 1914 VEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPMKDLQAMDR 1972

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G ++ V V+ LI + T++E V+   R K ++ + ++NA
Sbjct: 1973 -----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINA 2014


>gi|226874878|ref|NP_001152878.1| TATA-binding protein-associated factor 172 [Danio rerio]
 gi|220678558|emb|CAX13537.1| novel protein similar to H.sapiens BTAF1, BTAF1 RNA polymerase II,
            B-TFIID transcription factor-associated, 170kDa (Mot1
            homolog, S. cerevisiae) (BTAF1) [Danio rerio]
 gi|220679212|emb|CAX14073.1| novel protein similar to H.sapiens BTAF1, BTAF1 RNA polymerase II,
            B-TFIID transcription factor-associated, 170kDa (Mot1
            homolog, S. cerevisiae) (BTAF1) [Danio rerio]
          Length = 1858

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLD--------------KDPCTIQEWNEGKIPLLFA 114
              +++     S L  +++   + +                 +     +  N+  I +L  
Sbjct: 1652 HRVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLL 1711

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI + 
Sbjct: 1712 TTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLITRG 1765

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K TI + +++
Sbjct: 1766 TLEEKIMGLQKFKMTIANTVIS 1787


>gi|326918376|ref|XP_003205465.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like
           [Meleagris gallopavo]
          Length = 1020

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 377 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 436

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 437 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 496

Query: 90  QGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 497 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 555

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 556 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 600


>gi|126331506|ref|XP_001377204.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 [Monodelphis
           domestica]
          Length = 1050

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 408 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 467

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 468 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 527

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 528 DGQTPHDERQDSINAYNEPNSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 586

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 587 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 631


>gi|255937135|ref|XP_002559594.1| Pc13g11770 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584214|emb|CAP92246.1| Pc13g11770 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 834

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDP 98
              K+  L+ ++         I++   F + L  +++                    +  
Sbjct: 595 ASGKMLLLDRLVACLLKKGHKILIFSQFKTQLDIIEEWATTLRSWDCCRIDGAIAQSERQ 654

Query: 99  CTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +N  K   L      + G G+NL    + ++ F   W+ ++  Q        R  
Sbjct: 655 AQIKNFNTKKSHKLFLLSTRAGGQGINLT-AADTVIIFDSDWNPQQDLQA-----QDRAH 708

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G  + V +Y L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 709 RIGQTKPVIIYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 754


>gi|296195486|ref|XP_002745367.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 2
           [Callithrix jacchus]
 gi|296195488|ref|XP_002745368.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 3
           [Callithrix jacchus]
          Length = 995

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 576


>gi|167521105|ref|XP_001744891.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776505|gb|EDQ90124.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1094

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 37/159 (23%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQG 91
            A      D+ +HW  +   K+KAL   ++ A   P    +IV   + S L  ++      
Sbjct: 942  ATAPPNEDDRQHW--LSSSKLKALLADLDAATQQPDRPKVIVFSQWTSMLDLIE------ 993

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                               +      + G GLNL    + ++    WW      Q I+R+
Sbjct: 994  -------------------VFLMTLRTGGVGLNLT-AASHVILVDPWWSPAVEAQAIDRV 1033

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G  + V +   I +++I+E +L   + K  +
Sbjct: 1034 -----HRIGQDKPVTIKRYIMRDSIEERILALQKRKRAL 1067


>gi|85090195|ref|XP_958302.1| helicase SWR1 [Neurospora crassa OR74A]
 gi|74696276|sp|Q7S133|SWR1_NEUCR RecName: Full=Helicase swr-1
 gi|28919649|gb|EAA29066.1| helicase SWR1 [Neurospora crassa OR74A]
          Length = 1845

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++AL+ ++   +A     ++       L  L++             G 
Sbjct: 1496 PDKRLLQYDCGKLQALDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1555

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1556 TKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1614

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1615 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1655


>gi|212638494|ref|YP_002315014.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
 gi|212559974|gb|ACJ33029.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
          Length = 349

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 76/200 (38%), Gaps = 27/200 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y   Q++   + +   I               AN                +K+   E+
Sbjct: 165 REYKIIQKDRVLETKDGKIAFDTIMKLQHGLRYYAN--------------QKDKLSYTEM 210

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC------TIQEWNEGKIPLLFAH 115
           + E      I++ Y++  +   L     + +T+ +           ++W+  K  +    
Sbjct: 211 LAEGTEE-NIVIFYYYQQEKEDLMNLLGKSKTIYEVSGKVNKLPDREKWSNLKNTVTLVQ 269

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+ LQY  NI++F++  +  +++ Q + R       + G  + V VY  I +N+
Sbjct: 270 YQAGAAGIELQY-ANIVIFYTPTYSYQDYDQALGRC-----YRNGQTKKVTVYRYITKNS 323

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E V + L  K    + L 
Sbjct: 324 IEEAVYEALAAKKDFTEELF 343


>gi|322705041|gb|EFY96630.1| helicase SWR1 [Metarhizium anisopliae ARSEF 23]
          Length = 1731

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1400 PDKRLLQYDCGKLQVLDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1459

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1460 TKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1518

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1519 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1559


>gi|155370375|ref|YP_001425909.1| hypothetical protein FR483_N277L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123695|gb|ABT15562.1| hypothetical protein FR483_N277L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 554

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 29/209 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
           +K Y  +         G++          ++  Q           D +  + E    K+K
Sbjct: 332 LKAYKAY---------GDSEGRMEMLKTLLRLRQCTANITMVPKNDSKDEFYEGTSTKLK 382

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE- 106
            LE  I+ +     ++  HF+ ++  ++                   D+    I+ +NE 
Sbjct: 383 MLEDDIKASPIQKTLIFAHFHKEMTAIKDMLLSNGHKSVSIHGNVSGDERVKAIKHFNED 442

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                     A+ G GLNLQ    I +   + W+     Q I R       + G  + V 
Sbjct: 443 PATNFFIIQIAAGGVGLNLQTASRIYI-NGVDWNGTSETQAIAR-----AHRIGQTKPVI 496

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V  LI  ++ID+ ++   + K      +L
Sbjct: 497 VKRLIINDSIDDAIIGLQQKKFGAAADIL 525


>gi|154297606|ref|XP_001549229.1| hypothetical protein BC1G_12648 [Botryotinia fuckeliana B05.10]
 gi|150858471|gb|EDN33663.1| hypothetical protein BC1G_12648 [Botryotinia fuckeliana B05.10]
          Length = 1607

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ L+ ++   +A     ++       L  L++               
Sbjct: 1276 PDKRLLQYDCGKLQTLDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1335

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++       +N   +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1336 TKIEQRQILTDRFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1394

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1395 C-----HRIGQTRDVHIYRLVSEHTIEANILRKANQKRMLDDVVIQ 1435


>gi|331226428|ref|XP_003325884.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309304874|gb|EFP81465.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 1071

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 45/223 (20%)

Query: 13  CDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEV--------HDEKIKALEVI 62
            + +  +  + +        +QL       Y       +             K+  L+ I
Sbjct: 500 LEAEEGSTNSQSYKKLLNLLMQLRKVCNHPYLMPNSEPEPFLIAEHIVNVSSKLVMLDKI 559

Query: 63  IEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGK- 108
           ++        +++   F S L  + + F   R +D           +    I+ + + K 
Sbjct: 560 LKSELPKGKRLLIFSSFTSMLD-ILEDFLNLRQIDYLRLDGSTPVARRNLAIRIFQQTKT 618

Query: 109 --------------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                         +P+      + G G+NL    + +V +   W+ +   Q I R    
Sbjct: 619 MDTLKSHGSSSQRIVPIFLISTKAGGLGINLT-AADTVVLYDSSWNPQVDIQAIAR---- 673

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  + V VY LI   +++  ++ RLR K  +   +L++
Sbjct: 674 -AHRIGQTQNVTVYRLICAESVEHQMIGRLRKKLYLSLKILDS 715


>gi|297293444|ref|XP_001093597.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like isoform
           2 [Macaca mulatta]
          Length = 995

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 576


>gi|222637545|gb|EEE67677.1| hypothetical protein OsJ_25316 [Oryza sativa Japonica Group]
          Length = 641

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGR------ 92
           D   +       K++AL  ++ ++ +    +  ++   F   L  L+             
Sbjct: 454 DSSVNLDRPLSSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRL 513

Query: 93  ----TLDKDPCTIQEWN--EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               T  K    I+++       P +L A   + G G+NL    + +  F  WW+    +
Sbjct: 514 DGSMTAKKRSEVIRQFGCVGPDSPTVLLASLKAAGAGVNLT-AASTVYLFDPWWNPGVEE 572

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q ++R+      + G  + V V  LI +++I+E +L+    K  +
Sbjct: 573 QAMDRV-----HRIGQTKEVKVVRLIVKDSIEERMLELQERKKKL 612


>gi|221046276|dbj|BAH14815.1| unnamed protein product [Homo sapiens]
          Length = 995

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 576


>gi|254389181|ref|ZP_05004410.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702897|gb|EDY48709.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 964

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 49/216 (22%)

Query: 1   MKQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           +K + + Q+      +   +      +A  +A+++ K                       
Sbjct: 756 LKLFDQLQKICNAPEQFLAEPLDSTYDAERAAARSGKLA--------------------- 794

Query: 55  KIKALEVIIEKANA--APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC-TI 101
              AL+ ++   +      ++   + +   RL             F    +  +D    I
Sbjct: 795 ---ALDDLLPTLSDPDESCLIFTRYRAMARRLVHHLQGHGISPLYFSGDISAGRDRQRVI 851

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +       +     + G GL L    + ++ F   W+  +  Q I+R       + G 
Sbjct: 852 DTFQNHPGQTMVITIKAGGTGLTLTQASH-VILFDRPWNPAKESQAIDR-----AHRLGQ 905

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V V+ L  +NT+++ V + LR KS + D +L +
Sbjct: 906 TRTVTVHQLTTENTLEDRVEELLRHKSALADAVLAS 941


>gi|194380928|dbj|BAG64032.1| unnamed protein product [Homo sapiens]
          Length = 995

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 532 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 576


>gi|68075951|ref|XP_679895.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500739|emb|CAH95008.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 1536

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
           L    +  DE +        KI  LE ++ +       +++       L  L        
Sbjct: 682 LCCEPIDKDEYRERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 741

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +      T +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 742 FKHQRLDGTMTKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 800

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 801 PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 855

Query: 201 E 201
           +
Sbjct: 856 K 856


>gi|296083594|emb|CBI23583.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFP 89
             D EK+WKE     E +  LE I +       IV   + S L  L+            + 
Sbjct: 1015 IDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYD 1074

Query: 90   QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    ++E++E  +  +L     + G GLNL    N +     WW+    +Q I
Sbjct: 1075 GKVVQKQRERILKEFSETEEKTVLLMSLKAGGVGLNLTAASN-VFLMDPWWNPAVEEQAI 1133

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G +R V V   I ++T++E + Q    K   Q ++  AL  E +  
Sbjct: 1134 MRI-----HRIGQERTVRVRRFIVKDTVEERMQQVQARK---QRMITGALTDEEVRT 1182


>gi|225680579|gb|EEH18863.1| helicase swr1 [Paracoccidioides brasiliensis Pb03]
          Length = 1679

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1344 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1403

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1404 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1462

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1463 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1503


>gi|114596229|ref|XP_001144412.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 3 [Pan troglodytes]
          Length = 936

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 294 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 353

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 354 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 413

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 414 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 472

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 473 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 517


>gi|226292781|gb|EEH48201.1| helicase swr1 [Paracoccidioides brasiliensis Pb18]
          Length = 1679

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 1344 PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1403

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1404 TKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1462

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1463 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQ 1503


>gi|149698191|ref|XP_001502076.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5 [Equus
           caballus]
          Length = 1052

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|67967643|dbj|BAE00304.1| unnamed protein product [Macaca fascicularis]
          Length = 644

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 373 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNVLQEVCKRHGYAYTRLDGQTPIS 432

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N     + +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 433 QRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 490

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 491 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 532


>gi|37542688|gb|AAL47203.1| chromatin-remodeling factor CHD3 [Oryza sativa Indica Group]
          Length = 1111

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y    R       G ++   N     ++  +L   A   DE +      +   + LE 
Sbjct: 555 KNYEVLTRR-----SGGHVSLINV---VMELRKLCCHAFMTDEPEEPANSEEALRRLLES 606

Query: 61  ----VIIEKA------NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
                +++K           +++   F   L  L+              G+    +    
Sbjct: 607 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 666

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+     Q + R       +
Sbjct: 667 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AHR 720

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K T
Sbjct: 721 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGT 764


>gi|209945932|gb|ACI97197.1| okra [Drosophila yakuba]
          Length = 168

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I    N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 33  MLAAIRADGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 91

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 92  ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 145

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y ++A  +I+E +LQR   K 
Sbjct: 146 YIYRMVASGSIEEKILQRQTHKK 168


>gi|254304002|ref|ZP_04971360.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324194|gb|EDK89444.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 401

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)

Query: 37  NGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
           NG ++ +  K    +       +K++ L+        A I++ Y+FN +   ++K     
Sbjct: 231 NGIIFDNTSKVIAGLRQSAGLKDKLEYLKE-FRANTEANILIFYNFNREAREIKKIIKVD 289

Query: 92  RTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +      I ++++              + G G+ LQY  + ++FFS  W  +++ Q +
Sbjct: 290 FEVSGAVSNIPKFDDYDTLKGKTTLVQIQAGGAGIELQY-NSEVIFFSPTWSFQDYSQAL 348

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R       + G K  V VY  I + TI+E V  RL  K    + LL
Sbjct: 349 GR-----AYRIGQKNKVTVYKYIGKRTIEERVYARLDEKKDFAEKLL 390


>gi|73977786|ref|XP_867138.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 4 [Canis
           familiaris]
          Length = 1040

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 589 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 633


>gi|302792356|ref|XP_002977944.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
 gi|300154647|gb|EFJ21282.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
          Length = 835

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 23/155 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI AL  I++K  A       +V   F+S L   +    Q               K 
Sbjct: 680 SSAKITALLSILDKTRAKDPSIKTVVFSQFSSMLKLAEAPLTQAGYKFVKLQGGMSAKKR 739

Query: 98  PCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +         +      + G GLNL    N +V    WW+    +Q ++R+   
Sbjct: 740 DEAMEAFKSRSKDSPTVFLLSLKAAGVGLNLVSASN-VVMLDPWWNPAAEEQAMDRV--- 795

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + G  R V V+ L+A ++I+E +LQ    K  
Sbjct: 796 --HRLGQTRDVHVFRLVATDSIEERLLQMQEKKRA 828


>gi|307180292|gb|EFN68325.1| Lymphoid-specific helicase [Camponotus floridanus]
          Length = 773

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTL--DKDP 98
              K+  L+ ++ K +     +++       L  ++              GR    ++  
Sbjct: 561 SSGKLLVLDAMLAKLHARGHKVLLFSTMTMILDMIEDYLSLRDYNYVRLDGRIKIEERKE 620

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+  + L      + G GLNL    + ++ +   W+ +   Q + R       +
Sbjct: 621 NIKTFNNDPNVFLFLISTRAGGVGLNL-ASADTVIIYDSDWNPQADIQAMARC-----HR 674

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY L  + T+DE +++R   K  ++ ++++
Sbjct: 675 IGQTKPVVVYRLCTRGTVDETIIKRSEAKRILEKVVIS 712


>gi|298714024|emb|CBJ27256.1| probable chromatin remodelling complex ATPase chain [Ectocarpus
           siliculosus]
          Length = 1563

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 60/153 (39%), Gaps = 19/153 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN 105
           +  L   ++ A    ++V       +  L+              G T        I+E+N
Sbjct: 575 LDKLLTRLKAA-GHRVLVFSQMTRMMDILEDLMHMREYKYCRIDGNTPHDTRQDLIEEYN 633

Query: 106 EG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               +  +      + G G+NLQ   +  + +   W+ +   Q  +R       + G  +
Sbjct: 634 APGSEKFIFLLSTRAGGLGINLQ-SADTCILYDSDWNPQADLQAQDRC-----HRIGQTK 687

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY L+ ++TI+E V++R + K  +  +++ 
Sbjct: 688 TVKVYRLVTEDTIEEKVVERAQQKLKLDAMVVQ 720


>gi|195058262|ref|XP_001995418.1| GH23147 [Drosophila grimshawi]
 gi|193899624|gb|EDV98490.1| GH23147 [Drosophila grimshawi]
          Length = 1025

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKHWKEVHDE 54
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D  E          
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDSH 425

Query: 55  ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
                 K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEFNMDNSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|317156009|ref|XP_001825512.2| helicase swr1 [Aspergillus oryzae RIB40]
          Length = 1662

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1337 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1396

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1397 TKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1455

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1456 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1496


>gi|307177261|gb|EFN66439.1| DNA repair and recombination protein RAD54B [Camponotus floridanus]
          Length = 845

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHF-NSDL-------ARLQKAFPQGRTLD-KDPCTIQEWN- 105
           ++ L   ++K +   ++V+Y+    DL         L+     G          I+++N 
Sbjct: 599 LQVLMRNLKKTDEKLVLVSYYTQTLDLFETICNIEELKFLRLDGTISSSTRSKIIEQFNT 658

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L     + G GLNL  G + LV F   W+     Q + RI      + G K+ 
Sbjct: 659 RSDNSKILLLSAKAGGVGLNL-PGASRLVLFDSDWNPASDVQAMARIW-----RDGQKKN 712

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V++Y L+   TI+E + QR  +K+++ + +++
Sbjct: 713 VYIYRLLTTGTIEEKIYQRQISKASLSESVVD 744


>gi|121709100|ref|XP_001272308.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus clavatus
            NRRL 1]
 gi|119400457|gb|EAW10882.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1687

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1358 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1417

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1418 TKVEQRQILTDRFNNDDRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1476

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1477 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRLLDDVVIQ 1517


>gi|19115879|ref|NP_594967.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe 972h-]
 gi|15214050|sp|O14139|HRP3_SCHPO RecName: Full=Chromodomain helicase hrp3; AltName:
           Full=ATP-dependent helicase hrp3
 gi|2408073|emb|CAB16277.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe]
          Length = 1388

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQE- 103
           +  K+  L+ ++ +   +   +++       L  L      + +P  R     P  ++  
Sbjct: 688 NSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRT 747

Query: 104 ----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +N    P  +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 748 SIDHFNAPNSPDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 801

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++TI+E VL+R R K  ++  +++
Sbjct: 802 RIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIIS 840


>gi|321257722|ref|XP_003193686.1| DNA recombination and repair protein Rad54B [Cryptococcus gattii
           WM276]
 gi|317460156|gb|ADV21899.1| DNA recombination and repair protein Rad54B, putative [Cryptococcus
           gattii WM276]
          Length = 818

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           ++ +   I+      I++  +    L  ++K                ++ K    + ++N
Sbjct: 581 LERMLDHIKHHTNDKIVLISNATQTLDLMEKLCRSKRYGYLRLDGSMSVPKRSKIVAQFN 640

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E K  +      + G G+NL  G N LV F   W+    QQ + R+      + G K+
Sbjct: 641 QPESKEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPASDQQALARVW-----RDGQKK 694

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             FVY      TI+E + QR   K  +   +++  +    H
Sbjct: 695 ECFVYRFQTTGTIEEKIFQRQCQKQNLSACVVDEAEDTARH 735


>gi|255565952|ref|XP_002523964.1| TATA-binding protein-associated factor MOT1, putative [Ricinus
            communis]
 gi|223536691|gb|EEF38332.1| TATA-binding protein-associated factor MOT1, putative [Ricinus
            communis]
          Length = 1920

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+E+                    +++     + L  +++          
Sbjct: 1671 HSPKLVALQEILEECGIGVDISSSENAVNVGQHRVLIFAQHKALLDIIERDLFHSHMKNV 1730

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +K    ++ +N +  I  L       G GLNL    + LVF    W+  
Sbjct: 1731 TYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1789

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q ++R       + G K+ V V+ LI + T++E V+   + K ++ + ++NA
Sbjct: 1790 RDHQAMDR-----AHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINA 1839


>gi|225436245|ref|XP_002275285.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2052

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------ANA------APIIVAYHFNSDLARLQK---------- 86
            H  K+ AL  I+E+         +          +++     + L  +++          
Sbjct: 1803 HSPKLIALHEILEECGIGVDASSSEGAVSVGQHRVLIFAQHKAFLDIIERDLFHTHMKSV 1862

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +K    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1863 TYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1921

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++N+
Sbjct: 1922 RDHQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINS 1971


>gi|238498954|ref|XP_002380712.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus flavus
            NRRL3357]
 gi|220693986|gb|EED50331.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus flavus
            NRRL3357]
          Length = 1662

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1337 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1396

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1397 TKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1455

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1456 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1496


>gi|298705975|emb|CBJ29096.1| SNF2 family protein [Ectocarpus siliculosus]
          Length = 1288

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFP 89
            D +   +     K+  L+ I+         +++       L+ +++             
Sbjct: 758 SDNDHEVQR--SGKLLVLQQILPLWHKQGHRVLLFSQTRQMLSIIERFVVNNEWSYGRLD 815

Query: 90  QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +      I  +N  + + ++     + G G+NL  G + ++ F   W+     Q  
Sbjct: 816 GSTPVGNRQTLIDRFNNDESMFIMLLTTRTGGVGVNLT-GADRVILFDPDWNPSTDMQAR 874

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           ER       + G +R V VY L+   TI+E +  R   K+ + + +L   K+  +
Sbjct: 875 ERSW-----RVGQRRQVTVYRLVTAGTIEEKIYHRQIFKTALTNRVLQDPKQRRM 924


>gi|303315667|ref|XP_003067838.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107514|gb|EER25693.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1213

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 752 SGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQG 811

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 812 MVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDLQARERAW-----R 865

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 866 LGQKRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 908


>gi|302794214|ref|XP_002978871.1| hypothetical protein SELMODRAFT_109740 [Selaginella moellendorffii]
 gi|300153189|gb|EFJ19828.1| hypothetical protein SELMODRAFT_109740 [Selaginella moellendorffii]
          Length = 587

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 33  LQLANGAVYYDEEKHWKEV-HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQ 90
           LQL       + ++  +E+    K+KA   +++   +    ++   + S L  ++    +
Sbjct: 392 LQLEAQERQEEFDRKVQEIGQSAKLKAAMRVLDMTPHGEKSLIFSQWTSMLDLIEPELEE 451

Query: 91  G-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        T  +     +   + ++ ++     + G GLNL      ++   +WW
Sbjct: 452 AGIQFSRIDGSMSTRKRVEAIKRFSEDPEVAVMLISLRAGGCGLNL-VAATRVLLMDMWW 510

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +     Q I+R       + G  R V V   + + T++E +LQ    K  +
Sbjct: 511 NPTTEDQAIDR-----THRIGQTRPVHVTRFVVKQTVEERILQIQEEKKKL 556


>gi|296090211|emb|CBI40030.3| unnamed protein product [Vitis vinifera]
          Length = 1884

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------ANA------APIIVAYHFNSDLARLQK---------- 86
            H  K+ AL  I+E+         +          +++     + L  +++          
Sbjct: 1635 HSPKLIALHEILEECGIGVDASSSEGAVSVGQHRVLIFAQHKAFLDIIERDLFHTHMKSV 1694

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +K    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1695 TYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1753

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++N+
Sbjct: 1754 RDHQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINS 1803


>gi|115727574|ref|XP_001176374.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115939382|ref|XP_001175986.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 1031

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 54/242 (22%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD------ 43
           K Y      QRE Y  +  ++I+  N A K+ K           +  N    +D      
Sbjct: 368 KMYVGMSIMQREWYTKILMKDIDVVNGAGKSDKMRLMNILMHLRKCGNHPYLFDGAEPGP 427

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
               +KH  E +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 428 PYTTDKHLVE-NSGKMSVLDKLLPKLKEQGSRVLIFSQMTRLLDILEDYCVWRGHNYCRL 486

Query: 90  QGRTLDKDPCT-------------IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            G+T   +                I  +N  + +  +      + G G+NL    +I+V 
Sbjct: 487 DGQTPHAERQVSRLPMPCSHSQESINNFNMPDSEKFVFLLSTRAGGLGINL-ATADIVVL 545

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +   Q ++R       + G K+ V V+  I++NT++E +++R   K  + +++
Sbjct: 546 YDSDWNPQVDLQAMDR-----AHRIGQKKQVHVFRFISENTVEERIVERAEMKLRLDNIV 600

Query: 195 LN 196
           + 
Sbjct: 601 IQ 602


>gi|281337316|gb|EFB12900.1| hypothetical protein PANDA_013661 [Ailuropoda melanoleuca]
          Length = 912

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 327 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 386

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 387 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 446

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 447 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 505

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 506 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 550


>gi|294951977|ref|XP_002787191.1| hypothetical protein Pmar_PMAR025719 [Perkinsus marinus ATCC 50983]
 gi|239901899|gb|EER18987.1| hypothetical protein Pmar_PMAR025719 [Perkinsus marinus ATCC 50983]
          Length = 893

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQG 91
            ++   E    K++ L  ++   +      IV    +  L  ++ +              
Sbjct: 721 PDRDMIERDCGKMRKLGELLTTLRDGGHKCIVFTQMSKMLDIIEASMNLHGFTYVRLDGS 780

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    ++ +N   KI    A   + G G+NL  G + ++F+   W+    +Q ++R
Sbjct: 781 TPVLRRQLVVEAFNKSPKIFAFIASTRAGGVGINLT-GADCVIFYDSDWNPAMDRQAMDR 839

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ L++ +TI+E +  +   K  + D++++
Sbjct: 840 C-----HRIGQTRDVHIFRLLSHHTIEENIFHKQLQKRMLDDVVVD 880


>gi|224126033|ref|XP_002319739.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222858115|gb|EEE95662.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2045

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+E+                    +++     + L  +++          
Sbjct: 1796 HSPKLVALQEILEECGIGVDASSSDNAVSVGQHRVLIFAQHKALLDIIERDLFHSQMKNV 1855

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +K    ++ +N +  I  L       G GLNL    + LVF    W+  
Sbjct: 1856 TYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1914

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q ++R       + G K+ V V+ LI + T++E V+   + K ++ + ++NA
Sbjct: 1915 RDLQAMDR-----AHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINA 1964


>gi|256072692|ref|XP_002572668.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|238657831|emb|CAZ28900.1| chromodomain helicase DNA binding protein, putative [Schistosoma
           mansoni]
          Length = 1958

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L  ++     +   +++   F   L  L++     R                 T
Sbjct: 802 SSKLVVLMELLRGLFVDDHRVLIFSRFTMMLDLLEQVMINARYKYVRIDGRVRGPLRQVT 861

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N       +      + G G+NL    + +V +   W+ +   Q + R       +
Sbjct: 862 IDRFNAPDSEYFIFLLSTRAGGEGINL-ASADTVVLYDSDWNPQWDLQALSR-----AHR 915

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V +Y  I +++I+E + Q  R K  +  L+++
Sbjct: 916 IGQSKHVVIYRFITRHSIEEKISQVARRKLALTQLIVD 953


>gi|168015457|ref|XP_001760267.1| SNF2 superfamily RAD5 protein [Physcomitrella patens subsp. patens]
 gi|162688647|gb|EDQ75023.1| SNF2 superfamily RAD5 protein [Physcomitrella patens subsp. patens]
          Length = 1031

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
             D E +W      K+ AL   +E+   + A  +V   + + L  L+  F + +       
Sbjct: 855  VDVEANW--TDSCKVNALMNELEELRPSGAKSVVFSQWTAFLDLLEIPFKRKKIKFVRLD 912

Query: 95   -----DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    + ++     I ++     + G G+NL    N  +    WW+    +Q I
Sbjct: 913  GSLSQQQREKVLNDFRSQSDIMVMLISLKAGGVGINLTTASNAFLL-DPWWNPAVEEQAI 971

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G  + V V   I + +++E +      K   Q ++  AL  + + V
Sbjct: 972  MRI-----HRIGQTKDVQVKRFIVKGSVEEKMQAVQARK---QRMIAGALNNQEVRV 1020


>gi|321252272|ref|XP_003192348.1| hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
 gi|317458816|gb|ADV20561.1| Hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
          Length = 1283

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF 88
            LQ  N  V  ++      +   K+K L      IIE+  +  IIV   F   +  L   F
Sbjct: 1085 LQDVNDEVLIED-----VLPSTKMKKLGELIDAIIEQDPSQKIIVFSQFVEYID-LCSIF 1138

Query: 89   PQGRTL-----------DKDPCTIQEWN----EGKIP-LLFAHPASCGHGLNLQYGGNIL 132
             + R +           D+   TI+ +N    E K P  L       G GLNL    N +
Sbjct: 1139 LRRRNIPHAKYVGSMKQDEREDTIKNFNRPMEEDKSPRCLLMSLKCGGVGLNLCI-ANHV 1197

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +   L W+     Q ++R       + G  R V V+ L+ +NTID+ +++  + K  + D
Sbjct: 1198 ICLDLAWNAATENQAVDR-----AHRIGQTREVVVHRLVVENTIDQRLMELQQQKQALSD 1252

Query: 193  LLL 195
              +
Sbjct: 1253 GAM 1255


>gi|316965584|gb|EFV50276.1| 7 transmembrane receptor [Trichinella spiralis]
          Length = 2083

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQK-------- 86
            A + D     +     K+  L  ++E    +  A  ++VA +F   L  ++         
Sbjct: 1826 ACFTDVG--VRVGDSGKLTVLAQLLELVRRQYPAEKVVVASNFTESLNIIESYCNGMGFS 1883

Query: 87   --AFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +      +  +N       L      + G GLNL    N LV +   W+  
Sbjct: 1884 SFRLDGSTDVSSRQRMVDRFNTTTDDTFLFLLSTKAGGMGLNLT-AANRLVLYDCDWNPA 1942

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +Q + RI      + G +R   +Y L+   +I+E + QR   K  I
Sbjct: 1943 YDRQAMARIW-----RDGQRRVCHIYRLLTTGSIEENIFQRQIRKDDI 1985


>gi|84043448|ref|XP_951514.1| transcription activator [Trypanosoma brucei TREU927]
 gi|33348313|gb|AAQ15639.1| transcription activator, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|62359085|gb|AAX79532.1| transcription activator, putative [Trypanosoma brucei]
 gi|261326368|emb|CBH09327.1| transcription activator, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1160

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 64  EKANAAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKDPCTIQEWNEGKIP-- 110
           ++     +++   F S L  L+     + F   R        D+D   +  +N  K    
Sbjct: 495 DEKEGHKVLIFSQFTSMLDILEDYCSMRGFKVCRIDGSTSGYDRDSQ-MAAFNAPKSDYF 553

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NLQ   N+++ +   W+ +   Q        R  + G KR V VY  
Sbjct: 554 IFLLSTRAGGLGINLQAANNVII-YDSDWNPQMDLQA-----QDRAHRIGQKRVVRVYRF 607

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +   T++E +  R   K  +  +++   + 
Sbjct: 608 VTDGTVEERIYHRALKKLYLDAMVVQQGRA 637


>gi|156847261|ref|XP_001646515.1| hypothetical protein Kpol_1055p13 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117193|gb|EDO18657.1| hypothetical protein Kpol_1055p13 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1552

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L +++++   N    ++       L  L++             G 
Sbjct: 1275 PDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGA 1334

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   +  +  N+ ++ +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1335 TKIEDRQILTERFNNDPRVTVFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1393

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1394 C-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVIIQ 1434


>gi|156087380|ref|XP_001611097.1| snf2-related chromatin remodeling factor SRCAP [Babesia bovis T2Bo]
 gi|154798350|gb|EDO07529.1| snf2-related chromatin remodeling factor SRCAP [Babesia bovis]
          Length = 1675

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
              ++       K   L  ++ K        ++   F+  L  L+                
Sbjct: 1350 PPRNLLHDDCGKFLVLGNLLNKLKNEGHRCLLYTQFSKMLDILENWINLMGFTYIRLDGS 1409

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D     +  +NE  KI L  +   + G GL L  G + ++F+   W+    +Q ++R
Sbjct: 1410 TKVDMRQRIVTRFNENQKIFLFISSTRAGGVGLTLT-GADTVIFYDTDWNPAMDRQAMDR 1468

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V VY LI+++T++E + ++   K  + D++++
Sbjct: 1469 C-----HRIGQTREVNVYRLISEHTVEENIWRKQLQKRRLDDIVVD 1509


>gi|293418289|gb|ABY48151.3| Mot1 [Triticum monococcum subsp. aegilopoides]
          Length = 2069

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+++                    +++     + L  ++K          
Sbjct: 1820 HSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLIFAQHKAFLDIIEKDLFQSHMRSV 1879

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       DK    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1880 TYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1938

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++N+
Sbjct: 1939 KDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINS 1988


>gi|68073367|ref|XP_678598.1| DNA repair protein rhp16 [Plasmodium berghei strain ANKA]
 gi|56499117|emb|CAH97553.1| DNA repair protein rhp16, putative [Plasmodium berghei]
          Length = 1545

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 30/172 (17%)

Query: 52   HDEKIKALEVIIEK------ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
               KI+A   I E+            ++   + S L  ++    +   +           
Sbjct: 1373 TSTKIEA---IFEEVRNVIYNTDDKCLIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMV 1429

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++       N+ ++ +L     + G GLNLQ   N +     WW+     Q I+R    
Sbjct: 1430 SRNNILYNFNNDNQLRVLLISLKAGGEGLNLQV-ANRIFIVDPWWNPAAELQAIQR---- 1484

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
               + G  + V+    I +NT++E ++Q    K  + D  +    +A++K T
Sbjct: 1485 -AHRIGQTKTVYAIRFIIENTVEEKIIQLQNKKQLVFDCTIGNSGSAMQKLT 1535


>gi|293417053|gb|ACU00616.1| Mot1 protein [Triticum monococcum subsp. monococcum]
          Length = 2069

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+++                    +++     + L  ++K          
Sbjct: 1820 HSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLIFAQHKAFLDIIEKDLFQSHMRSV 1879

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       DK    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1880 TYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1938

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++N+
Sbjct: 1939 KDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINS 1988


>gi|302892777|ref|XP_003045270.1| transcription-coupled repair protein CSB/RAD26 [Nectria
           haematococca mpVI 77-13-4]
 gi|256726195|gb|EEU39557.1| transcription-coupled repair protein CSB/RAD26 [Nectria
           haematococca mpVI 77-13-4]
          Length = 1164

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
             K++  + +++K    N    ++       L  ++K                 +D+   
Sbjct: 731 SAKLQLTKDLLQKVMIPNGHKTLLFSQGKQMLNIIEKCIRECDISYVRMDGETPVDQRQP 790

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++NE   I +      + G G NL  G + ++ F   W+     Q  ER       +
Sbjct: 791 MIDKFNEDPNIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPSTDLQARERAW-----R 844

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 845 LGQKKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 887


>gi|242059437|ref|XP_002458864.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
 gi|241930839|gb|EES03984.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
          Length = 1207

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 43/230 (18%)

Query: 8    QRELYCDLQGENIEAFNSASKTVK-------CLQL---ANGAVYYDEEKHWKEVHDEKIK 57
            QRELY ++  +N    N A K+ K        +QL    N    +      ++  D+ + 
Sbjct: 782  QRELYINILEKNYSKLNGAIKSGKKLALNNILMQLRKCCNHPYLFQGLNTEQQPEDDFLS 841

Query: 58   AL-------------EVIIEKANAAPIIVAYHFNSDLARLQKA-----FPQGRT-----L 94
             +               + E+ N   +++       L  L+       F   R      L
Sbjct: 842  LVAVSGKLQLLQKLLPRLKERGNR--VLIFSQMTMMLDILEGFLFYMGFKYARIDGQTSL 899

Query: 95   DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +I+E+N  E +I +      + G G++L  G + ++ +   ++     Q   R  
Sbjct: 900  SARQESIKEYNRAESEIFIFLMSTRAGGLGVDL-PGADRVIIYDPDFNPFMDLQAQAR-- 956

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 + G  R V VY LI + +++E +LQ+ + K  ++++L+N+  K+ 
Sbjct: 957  ---AHRIGQTRPVVVYQLITKCSVEEKILQKSKKKLAVENMLMNSSNKKP 1003


>gi|320584169|gb|EFW98380.1| helicase, putative [Pichia angusta DL-1]
          Length = 1498

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++        +++       L  L+K             G 
Sbjct: 1200 PDKSLLQYDCGKLQKLASLLQDLIPKGHRVLIFTQMTKVLDILEKFMNYNGYKYMRLDGA 1259

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + KI        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1260 TKIEDRQLLTERFNKDPKIKCFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1318

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 1319 C-----HRIGQTRDVHIYRFVSEYTIESNILKKANQKRQLDNVVIQ 1359


>gi|50308261|ref|XP_454131.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643266|emb|CAG99218.1| KLLA0E04159p [Kluyveromyces lactis]
          Length = 826

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K++ L+ ++ +       +++   F S L  ++                   +    
Sbjct: 570 TSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKE 629

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+E+++   K  L      + G G+NL    ++++ F   W+ +   Q ++R       
Sbjct: 630 QIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVII-FDSDWNPQVDLQAMDR-----AH 683

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  + V VY L   NTI+ +++ R   K  ++ L++   K  T+ 
Sbjct: 684 RIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLK 730


>gi|242013509|ref|XP_002427447.1| Helicase, putative [Pediculus humanus corporis]
 gi|212511833|gb|EEB14709.1| Helicase, putative [Pediculus humanus corporis]
          Length = 2228

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 19/176 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------ 86
            +A+       +    +    K++ L+ ++ K   N   +++       L  L+       
Sbjct: 1523 IASSMCTQFPDPRLIQYDCGKLQVLDKLLRKLKMNHHKVLLFTQMTRMLDILEAFLNYHG 1582

Query: 87   ----AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       +D+    ++ +N  K I        S G G+NL  G + ++F+   W+ 
Sbjct: 1583 HIYLRLDGTTKVDQRQVLMERFNGDKRIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNP 1641

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q  +R       + G  R V +Y LI++ T++E +L++   K  + DL +  
Sbjct: 1642 TMDAQAQDRC-----HRIGQTRDVHIYRLISEMTVEENILKKANQKRLLGDLAIEG 1692


>gi|195124267|ref|XP_002006615.1| GI18485 [Drosophila mojavensis]
 gi|193911683|gb|EDW10550.1| GI18485 [Drosophila mojavensis]
          Length = 1020

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 365 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 424

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 425 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 484

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 485 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 583


>gi|221062029|ref|XP_002262584.1| DNA repair protein rhp16 [Plasmodium knowlesi strain H]
 gi|193811734|emb|CAQ42462.1| DNA repair protein rhp16, putative [Plasmodium knowlesi strain H]
          Length = 1527

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 24/169 (14%)

Query: 52   HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
               KI+A+   ++          ++   + S L  ++    +   +              
Sbjct: 1355 SSTKIEAVFEEVKNVIHTTDDKCLIFSQYCSMLDLIEYHLKKHNIICSKLLGYMPMVSRN 1414

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +NE K + +L     + G GLNLQ   N +     WW+     Q I+R       
Sbjct: 1415 NILYNFNEDKHLRVLLISLKAGGEGLNLQV-ANRIFIVDPWWNPAAELQAIQR-----AH 1468

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
            + G  + V+    I +NT++E ++Q    K  + D  +    NA++K T
Sbjct: 1469 RIGQTKTVYATRFIIENTVEEKIVQLQNKKQLVFDCTIGDSGNAMQKLT 1517


>gi|115385374|ref|XP_001209234.1| helicase swr1 [Aspergillus terreus NIH2624]
 gi|114196926|gb|EAU38626.1| helicase swr1 [Aspergillus terreus NIH2624]
          Length = 1532

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1205 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1264

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1265 TKVEQRQILTDRFNNDDRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1323

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1324 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1364


>gi|328711442|ref|XP_001943462.2| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Acyrthosiphon pisum]
          Length = 842

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 21/166 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNS--------DLARLQKAFPQGRT 93
           KH       K+  ++ ++++ +       ++++Y+  +        D+   +     G T
Sbjct: 582 KHSLIESSGKLIVVDNLLKELHKNGSEKTVLISYYTQTLDIFVKLCDMKHYKYLRLDGST 641

Query: 94  LDKDPCTI-QEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  I +++N       +L     + G GLNL  G + L+ +   W+    QQ + R
Sbjct: 642 ATAQRTDIVKKFNNSNSNYSVLLLSAKAGGVGLNL-VGASNLILYDSDWNPASDQQAMAR 700

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I      + G K+ V +Y L+   TI+E + QR  +K+ + + + N
Sbjct: 701 IW-----RDGQKKNVHIYRLLTSGTIEEKIFQRQISKTGLSEAITN 741


>gi|315043989|ref|XP_003171370.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311343713|gb|EFR02916.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 1707

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1357 PDKRLLQYDCGKLQQLDKLLRTLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1416

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1417 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1475

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1476 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1516


>gi|254569384|ref|XP_002491802.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
 gi|238031599|emb|CAY69522.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
          Length = 1061

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL--ANGAVYYDEEKHW------- 48
             QR+ Y  +  ++I+A  S+S             +QL       Y  E           
Sbjct: 399 DMQRQWYQKILEKDIDAVVSSSGKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTD 458

Query: 49  --KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                + +K+K L+ ++++     + +++    +  L  L+              G+T  
Sbjct: 459 EHLVFNAQKMKVLDKLLKRKKEQGSRVLIFSQMSRMLDILEDYCNFREYGYCRIDGQTDH 518

Query: 96  KDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D    I ++N       +      + G G+NL    + ++ +   W+ +   Q ++R  
Sbjct: 519 SDRIDAIDDYNRKDSDKFVFLLTTRAGGLGINLT-SADTVILYDSDWNPQADLQAMDR-- 575

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  + V+VY L+ +N I+E VL+R + K  +  L++ 
Sbjct: 576 ---AHRIGQTKQVYVYRLVTENAIEEKVLERAQQKLRLDQLVIQ 616


>gi|303276396|ref|XP_003057492.1| ran-binding dexh-box helicase [Micromonas pusilla CCMP1545]
 gi|226461844|gb|EEH59137.1| ran-binding dexh-box helicase [Micromonas pusilla CCMP1545]
          Length = 1514

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
            A    Y + E+  K++  +K+  L     K     +++       L  L+          
Sbjct: 954  AAHEKYGEVERSGKQLVTQKVLELW----KEQGHRVLLFSQTQQMLDILEAMVAKAGYPY 1009

Query: 86   KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            +       + +    I E+N +  + +        G G+NL  G + ++ +   W+    
Sbjct: 1010 RRMDGATPVSQRMTLIDEFNTDANVFVFLLTTKVGGLGVNLT-GADRVLLYDPDWNPSTD 1068

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Q  ER       + G  R V VY L+   TI+E V  R   K  +   +L   K+ 
Sbjct: 1069 AQARERAW-----RIGQTREVTVYRLVTAGTIEEKVYHRQIYKEFLTSKVLKDPKQR 1120


>gi|47210118|emb|CAF91684.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1996

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLD--------------KDPCTIQEWNEGKIPLLFA 114
              +++     S L  ++    + +                 +     +  N+  I +L  
Sbjct: 1765 HRVLIFCQLKSMLDIVEHDLLKPKLPSVTYLRLDGSVPAGLRHSIVSRFNNDPSIDVLLL 1824

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI + 
Sbjct: 1825 TTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLITRG 1878

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K +I + +++
Sbjct: 1879 TLEEKIMGLQKFKMSIANTVIS 1900


>gi|170940256|emb|CAP65483.1| unnamed protein product [Podospora anserina S mat+]
          Length = 866

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 22/207 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVI 62
            +F+R    +L    I      +  ++   + N     Y  E          K+  L+ +
Sbjct: 578 DEFERARTLELAKREISLKKLGNPVMQLRLVCNSPHHFYDCEADESIVTASGKMLLLDRL 637

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGK 108
           +         +++   FN  L  L+                    +     I+++N + +
Sbjct: 638 LPALFERGHKVLIFSQFNKQLDLLESYCADLRGWPVCRIDGSVAQEDRQAQIEDFNKDPE 697

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G G+NL    + ++ F   W+ ++  Q        R  + G  R V VY
Sbjct: 698 LKIFLLTTRAGGQGINL-ASADTVILFDSDWNPQQDLQA-----QDRAHRIGQTRPVVVY 751

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L  ++T+++ +L     K  ++ L++
Sbjct: 752 RLATKDTVEDELLGSADAKRRLEKLVI 778


>gi|326523023|dbj|BAJ88557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1220

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +E I++  K     +++       L  L+          +         +    
Sbjct: 747 SGKMKVVEQILKVWKDQGHRVLLFAQTQQMLDILESFLTARDYQYRRMDGLTPPKQRMAL 806

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N   +I +        G G NL  G N ++ F   W+     Q  ER       + 
Sbjct: 807 IDEFNNTDEIFIFILTTKVGGLGTNLT-GANRVIIFDPDWNPSTDMQARERAW-----RI 860

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G KR V VY LI + TI+E V  R   K  + + +L
Sbjct: 861 GQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVL 896


>gi|155121958|gb|ABT13826.1| hypothetical protein MT325_M272L [Paramecium bursaria chlorella
           virus MT325]
          Length = 459

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
           +K Y  +         G++          ++  Q           D +  + E    K+K
Sbjct: 237 LKAYKAY---------GDSEGRMEILKTLLRLRQCTANITMVPKNDSKDEFYEGTSTKLK 287

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
            LE  I+ +     ++  HF+ ++  ++                   D+    I+++NE 
Sbjct: 288 MLEDDIKASPIQKTLIFAHFHKEMTAIKDMLLSNGHKSVSINGNVSGDERVKAIKQFNED 347

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                     A+ G GLNLQ    I +   + W+     Q I R       + G  + V 
Sbjct: 348 SATNFFIIQIAAGGVGLNLQTASRIYI-NGVDWNGTSETQAIAR-----AHRIGQTKPVI 401

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V  LI  ++ID+ ++   + K      +L
Sbjct: 402 VKRLIINDSIDDAIIGLQQKKFGAAADIL 430


>gi|156030975|ref|XP_001584813.1| hypothetical protein SS1G_14268 [Sclerotinia sclerotiorum 1980]
 gi|154700659|gb|EDO00398.1| hypothetical protein SS1G_14268 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1595

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ L+ ++   +A     ++       L  L++               
Sbjct: 1264 PDKRLLQYDCGKLQTLDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1323

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++       +N   +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1324 TKIEQRQILTDRFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1382

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1383 C-----HRIGQTRDVHIYRLVSEHTIEANILRKANQKRMLDDVVIQ 1423


>gi|327296738|ref|XP_003233063.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326464369|gb|EGD89822.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 1693

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1343 PDKRLLQYDCGKLQQLDKLLRKLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1402

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1403 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1461

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1462 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1502


>gi|219110099|ref|XP_002176801.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411336|gb|EEC51264.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 711

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 19/164 (11%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDPCT 100
             K++ L  I+   K     +++   +   L  ++     K +  GR      +      
Sbjct: 325 SGKLEVLSKILPLWKKQGHRVLIFCQWRKMLDIIERLIMLKEWKFGRLDGNTNVASRQRL 384

Query: 101 IQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++N  +    +     + G GLNL  G N ++ +   W+ +   Q  ER       + 
Sbjct: 385 VDQFNSDESYFGMLCTTRTGGVGLNLT-GANRIILYDPDWNPQTDAQARERAW-----RF 438

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           G +R V VY LI   TI+E + QR   K+ + + +L   ++  +
Sbjct: 439 GQEREVTVYRLITAGTIEEKIYQRQIFKTALSNKVLQDPRQRRL 482


>gi|147818386|emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera]
          Length = 1249

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFP 89
             D EK+WKE     E +  LE I +       IV   + S L  L+            + 
Sbjct: 1071 IDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYD 1130

Query: 90   QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    ++E++E  +  +L     + G GLNL    N +     WW+    +Q I
Sbjct: 1131 GKVVQKQRERILKEFSETEEKMVLLMSLKAGGVGLNLTAASN-VFLMDPWWNPAVEEQAI 1189

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G +R V V   I ++T++E + Q    K   Q ++  AL  E +  
Sbjct: 1190 MRI-----HRIGQERTVRVRRFIVKDTVEERMQQVQARK---QRMITGALTDEEVRT 1238


>gi|253721987|gb|ACT34057.1| Mot1 [Aegilops tauschii]
          Length = 2051

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 35/175 (20%)

Query: 52   HDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARLQK---------- 86
            H  K+ AL+ I+++                    +++     + L  ++K          
Sbjct: 1802 HSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLIFAQHKAFLDIIEKDLFQSHMRSV 1861

Query: 87   ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       DK    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 1862 TYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 1920

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++N+
Sbjct: 1921 KDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINS 1970


>gi|296489466|gb|DAA31579.1| transcription termination factor, RNA polymerase II [Bos taurus]
          Length = 1163

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDP 98
            D+++   ++    +  LE +   + +   ++   + S L      L++      T+D   
Sbjct: 986  DDKRESTKISS-LLAELEAVRRNSGSQKSVIVSQWTSMLKVVALHLKRCGFTYATIDGSV 1044

Query: 99   CT------IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    ++ +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI
Sbjct: 1045 NPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI 1103

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1104 -----YRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQILSG 1144


>gi|134077223|emb|CAK45564.1| unnamed protein product [Aspergillus niger]
          Length = 841

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGR 92
                    K+  L+ ++         I++   F + L  LQ                  
Sbjct: 591 DETLVTASGKMLLLDRLVPCLLNKGHKILIFSQFKTQLDILQDWATQLRSWNCCRIDGAV 650

Query: 93  TLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + +     I+ +N  K   L      + G G+NL    + ++ F   W+ ++  Q     
Sbjct: 651 SQEDRRAQIKAFNTDKNYKLFLLSTRAGGQGINL-MAADTVILFDSDWNPQQDLQA---- 705

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 706 -QDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 756


>gi|123959764|ref|NP_001074204.1| transcription termination factor 2 [Bos taurus]
 gi|115545427|gb|AAI22691.1| Transcription termination factor, RNA polymerase II [Bos taurus]
          Length = 1163

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDP 98
            D+++   ++    +  LE +   + +   ++   + S L      L++      T+D   
Sbjct: 986  DDKRESTKISS-LLAELEAVRRNSGSQKSVIVSQWTSMLKVVALHLKRCGFTYATIDGSV 1044

Query: 99   CT------IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    ++ +N  + P ++     + G GLNL  GGN L    + W+     Q  +RI
Sbjct: 1045 NPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI 1103

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1104 -----YRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQILSG 1144


>gi|255086381|ref|XP_002509157.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524435|gb|ACO70415.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1814

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 84/243 (34%), Gaps = 55/243 (22%)

Query: 3    QYHKFQ-----RELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWK---- 49
             Y  F+      E+   + G    A  +A+          +L +      E    K    
Sbjct: 1495 LYDAFEGSSANAEITNVISGGGESASGAATHVFQALQYLRKLCSHPRLVTEGDGKKGKKA 1554

Query: 50   ----EVHDEKIKALEVII------------------EKANAAPIIVAYHFNSDLARLQKA 87
                E    K  AL+ I+                  ++++   +++     S L  ++  
Sbjct: 1555 KPTAETMSPKFMALKQILLDCGIGEDPLAEKDPDQKQESSGHRVLIFSQLKSLLDLVEDE 1614

Query: 88   F------------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                           G         + +++N +  I +L       G GLNL    + +V
Sbjct: 1615 LFGHLLKGVSWLRLDGSVAPTARFDVVRKFNADPSIDVLLLTTHVGGLGLNLT-SADTVV 1673

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++  Q ++R       + G KR V V+ L+ + T++E ++   R K  + + 
Sbjct: 1674 FLEHDWNPQKDLQAMDR-----AHRLGQKRTVNVFRLLTKGTLEEKIMGLQRFKLDVANA 1728

Query: 194  LLN 196
            ++N
Sbjct: 1729 VVN 1731


>gi|320586275|gb|EFW98954.1| rsc complex subunit [Grosmannia clavigera kw1407]
          Length = 1493

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            + Y +     + +  D +G  + A   ++  ++  +L N    +DE +            
Sbjct: 840  RLYKEMLTNNKLIVSDGKGGKMGARGLSNVIMQLRKLCNHPFVFDEIETVMNPLSISNDL 899

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DK 96
                  K + LE ++   +A    +++ +   + +  +         Q     G T  D+
Sbjct: 900  LWRTAGKFELLERVLPKYQATGHRVLMFFQMTAIMDIMEDFLRYRNVQYLRLDGTTKADE 959

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    P  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 960  RSDLLREFNAPNSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 1013

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI   +I+E +L+R R K  +   ++ A +
Sbjct: 1014 RAHRIGQKNEVRILRLITSTSIEEKILERARYKLDMDGKVIQAGR 1058


>gi|297814462|ref|XP_002875114.1| CHR19/ETL1 [Arabidopsis lyrata subsp. lyrata]
 gi|297320952|gb|EFH51373.1| CHR19/ETL1 [Arabidopsis lyrata subsp. lyrata]
          Length = 764

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
             +   K + L  ++         +++   + S L  L+              G T   D
Sbjct: 584 HVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTD 643

Query: 98  PCTIQE-WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             TI + +N  K I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 644 RQTIVDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQIDRQAEDRC---- 698

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 699 -HRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 739


>gi|259485512|tpe|CBF82596.1| TPA: Helicase swr1 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5ARK3] [Aspergillus
            nidulans FGSC A4]
          Length = 1698

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1363 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGT 1422

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1423 TKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1481

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1482 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1522


>gi|297738311|emb|CBI27512.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
             +   K + L  ++         +++   + S L  L+              G T   D
Sbjct: 548 HVMVSAKCRELAELLPTLKQGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTD 607

Query: 98  PCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             TI +   N+  I        + G GLNL  G + +V   + ++ +  +Q  +R     
Sbjct: 608 RQTIVDTFNNDTSIFACLLSTRAGGQGLNLT-GADTVVIHDMDFNPQIDRQAEDRC---- 662

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V +Y L+ ++T+DE V +  + K  +   +L +
Sbjct: 663 -HRIGQTKPVTIYRLVTKDTVDENVYEIAKRKLILDAAVLES 703


>gi|156098278|ref|XP_001615171.1| helicase [Plasmodium vivax SaI-1]
 gi|148804045|gb|EDL45444.1| helicase, putative [Plasmodium vivax]
          Length = 1399

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 37/224 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H  
Sbjct: 558 KLQKKLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI 617

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDP 98
           E    K+  L+ ++ +     + +++       L  +         +     G T+  + 
Sbjct: 618 E-TSGKMSLLDKLLPRLKKENSRVLLFSQMTRVLDIIDDYCRWKNYEYLRIDGSTVGDER 676

Query: 99  CT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 677 QIRINQFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 730

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V VY  + QN+++E +++R   K  +  L++   K
Sbjct: 731 AHRIGQKKKVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 774


>gi|308511103|ref|XP_003117734.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
 gi|308238380|gb|EFO82332.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
          Length = 3156

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTV-KCLQLANGAVYYDEEKHWKEVH--------- 52
             Y   Q+ L  D  G+      S   T+    +L N    ++  +   +           
Sbjct: 1820 LYKHMQKGLLLD--GKTNTGSRSLMNTMVHLRKLCNHPFLFNNVEDSCKSFWNSKFITAT 1877

Query: 53   -----DEKIKALEVIIE--KANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-D 95
                   K++ L+ I+   +A    +++ +   + +           +      G T  D
Sbjct: 1878 DLYRVSGKLELLDRILPKLRATGHRVLMFFQMTAMMTVVEDYLAGGTINYLRLDGSTKPD 1937

Query: 96   KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    + ++N    K  L      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 1938 ERGALLDKFNAPNSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----Q 1991

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 1992 DRAHRIGQKAEVRVFRLITSNSVEEKILASARFKLNVDEKVIQAGK 2037


>gi|168012021|ref|XP_001758701.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162690311|gb|EDQ76679.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1220

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
           +  K+  L+ ++ K  A    +++   F   L  L+              G+    +   
Sbjct: 616 NSGKLLLLDKMMTKLHAQGHRVLIYSQFTRMLDILEDWLHLKKWGYERIDGKISGSERQI 675

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 676 RIDRYNAPNSTKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 729

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G +  V ++ L+ + TI+E ++Q  + K  ++ L++  +KKE I
Sbjct: 730 RLGQQNKVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRMKKENI 775


>gi|332019859|gb|EGI60320.1| DNA repair and recombination protein RAD54B [Acromyrmex echinatior]
          Length = 857

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 24/194 (12%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           L  E    ++  SK     Q     +  DE           ++ L   ++K +   ++V+
Sbjct: 578 LNEEEKALYDVLSKVSYLSQ-----IKRDENFTEYCGKVTIVQTLMRNLKKTDEKLVLVS 632

Query: 75  YHFNSDLARLQ-----KAFPQGRTLDKDPCTI-----QEWNE--GKIPLLFAHPASCGHG 122
           Y +   L  L+     +     R       TI     +++N       +L     + G G
Sbjct: 633 Y-YTQTLDLLETICNMERLKFLRLDGATSSTIRLKITEQFNTQTDNSKVLLLSAKAGGVG 691

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL  G + LV F   W+     Q + RI      + G KR V++Y L+   TI+E + Q
Sbjct: 692 LNL-PGASRLVLFDSDWNPASDMQAMARIW-----RDGQKRNVYIYRLLTTGTIEEKIYQ 745

Query: 183 RLRTKSTIQDLLLN 196
           R  +K+ + + +++
Sbjct: 746 RQISKANLSETVVD 759


>gi|296413962|ref|XP_002836675.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630508|emb|CAZ80866.1| unnamed protein product [Tuber melanosporum]
          Length = 870

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 52  HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           H  K + LE ++          I++  ++ S L  LQ                   +K  
Sbjct: 552 HSGKFRVLERLLLALRNTTDEKIVLVSNYTSTLDLLQNLLRSRGLSYLRLDGTTPTNKRQ 611

Query: 99  CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++N               S G GLNL  G + L  F L W+     Q + RI    
Sbjct: 612 ELVDQFNRTNSTTAFAFLLSAKSGGAGLNL-IGASRLALFDLDWNPATDAQAMARI---- 666

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G +R V +Y ++     DE + QR  TK  + D +++
Sbjct: 667 -HRDGQRREVKIYRMLTTGCFDEKIYQRQLTKIGLADSVMD 706


>gi|225432997|ref|XP_002280814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 42   YDEEKHWKEVH--DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFP 89
             D EK+WKE     E +  LE I +       IV   + S L  L+            + 
Sbjct: 1046 IDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYD 1105

Query: 90   QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    ++E++E  +  +L     + G GLNL    N +     WW+    +Q I
Sbjct: 1106 GKVVQKQRERILKEFSETEEKTVLLMSLKAGGVGLNLTAASN-VFLMDPWWNPAVEEQAI 1164

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G +R V V   I ++T++E + Q    K   Q ++  AL  E +  
Sbjct: 1165 MRI-----HRIGQERTVRVRRFIVKDTVEERMQQVQARK---QRMITGALTDEEVRT 1213


>gi|170572145|ref|XP_001891999.1| Potential global transcription activator SNF2L [Brugia malayi]
 gi|158603134|gb|EDP39180.1| Potential global transcription activator SNF2L, putative [Brugia
           malayi]
          Length = 1024

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N    +D  E  
Sbjct: 396 VKIYVGLSKMQREWYTRILMKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 455

Query: 47  HWKEVHDEKIK--------ALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFP 89
                    +            ++  KA  + +++    +  L  L         +    
Sbjct: 456 PPYTTDQHLVDNSGKMVLLDKLLVKLKAQGSRVLIFSSMSRMLDLLEDYCWWRGYRYCRL 515

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T+ D+   +I E+N+      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 516 DGQTVHDERQKSIDEFNKPDSDKFIFMLTTRAGGLGINLT-AADVVIIYDSDWNPQVDLQ 574

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I  NT+DE +++R   K  +  +++ 
Sbjct: 575 AMDR-----AHRIGQKKQVRVFRFITDNTVDERIIERAEMKLHLDSIVIQ 619


>gi|18400745|ref|NP_565587.1| PKL (PICKLE); ATPase/ DNA binding / DNA helicase [Arabidopsis
           thaliana]
 gi|75193642|sp|Q9S775|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE;
           AltName: Full=Protein GYMNOS
 gi|6318930|gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana]
 gi|6478518|gb|AAF13875.1|AF185577_1 chromatin remodeling factor CHD3 [Arabidopsis thaliana]
 gi|330252572|gb|AEC07666.1| CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana]
          Length = 1384

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 22/181 (12%)

Query: 39  AVYYDEEKHWKEVHDE--KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            V +D  + +K++ +   K++ L+ ++ K       +++   F   L  L         Q
Sbjct: 578 PVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQ 637

Query: 86  KAFPQGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G+    +    I  +N              + G G+NL    + ++ +   W+  
Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPH 696

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Q + R       + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + 
Sbjct: 697 ADLQAMAR-----AHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQN 751

Query: 203 I 203
           I
Sbjct: 752 I 752


>gi|298709602|emb|CBJ49249.1| similar to E1a binding protein P400 (Partial) [Ectocarpus
            siliculosus]
          Length = 2819

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             ++   +    K++ L  ++          ++    +  L  L++             G 
Sbjct: 1683 PDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQMSRMLDVLEEFLTLHGHTYVRLDGS 1742

Query: 93   T-LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T ++K    +  +N + K+        S G G+NL  G + ++F+   W+     Q    
Sbjct: 1743 TGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDAQA--- 1798

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y L+  ++I+E +L++ + K  +  L++ A
Sbjct: 1799 --QDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTA 1843


>gi|320166021|gb|EFW42920.1| Ercc6 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1576

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
            ++    K+  ++ ++    A    +++       L  +++                 +  
Sbjct: 1034 RKDLSGKLVVIDSLLRMWHAQGHRVLLFAQTRQTLDIIERWVRSTAYRYRRMDGTTPIRS 1093

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + E+N  + + L        G G+NL  G + +V F   W+     Q  ER     
Sbjct: 1094 RQQMVDEFNTNESLFLFLLTTKVGGLGVNLT-GADRVVIFDPDWNPSTDTQARERAW--- 1149

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G KR V VY L+   TI+E +  R   K  + + +L+
Sbjct: 1150 --RIGQKRQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLS 1188


>gi|297742732|emb|CBI35366.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 25/160 (15%)

Query: 50  EVHDEKIKALEVII--------EKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKD 97
           E    KI+A   I+        E       IV   + S L  ++ +      Q R LD  
Sbjct: 726 EYSSSKIRAALEILQSHSYSNPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGT 785

Query: 98  ------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    ++++N + ++ ++     +   GLN+    ++++   LWW+     Q ++R
Sbjct: 786 MSLASRDRAVKDFNTDPEVTVMLMSLKAGNLGLNM-VAASLVILLDLWWNPTTEDQAVDR 844

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G  R V V  +  ++T+++ +L     K  +
Sbjct: 845 -----AHRIGQTRPVTVSRITIKDTVEDRILALQEDKRKM 879


>gi|198458681|ref|XP_002138575.1| GA24314 [Drosophila pseudoobscura pseudoobscura]
 gi|198136427|gb|EDY69133.1| GA24314 [Drosophila pseudoobscura pseudoobscura]
          Length = 3240

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L+ ++ +   +   +++       L  L+              G T  +    + +
Sbjct: 1697 KLQTLDRLLRQLKVDGHRVLIFTQMTKMLDVLEAFLNHHGHIYLRLDGSTRVEQRQILME 1756

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1757 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1810

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1811 TRDVHIYRLVSEKTIEVNILKKANQKRMLSDMAIEG 1846


>gi|25412286|pir||B84645 hypothetical protein At2g25170 [imported] - Arabidopsis thaliana
          Length = 1359

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 22/181 (12%)

Query: 39  AVYYDEEKHWKEVHDE--KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            V +D  + +K++ +   K++ L+ ++ K       +++   F   L  L         Q
Sbjct: 578 PVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQ 637

Query: 86  KAFPQGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G+    +    I  +N              + G G+NL    + ++ +   W+  
Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPH 696

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Q + R       + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + 
Sbjct: 697 ADLQAMAR-----AHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQN 751

Query: 203 I 203
           I
Sbjct: 752 I 752


>gi|224095220|ref|XP_002310362.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222853265|gb|EEE90812.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 923

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPL 111
           +        IV   + S L  ++          +      TL      ++++N + ++ +
Sbjct: 763 LSTEGPIKAIVFSQWTSMLDLVEFSLNQHCIQYRRLDGTMTLSSRDKAVKDFNTDPEVTV 822

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLN+      ++   LWW+     Q I+R       + G  R V V  L 
Sbjct: 823 MLMSLKAGNLGLNM-VAACHVILLDLWWNPTTEDQAIDR-----AHRIGQTRPVTVTRLT 876

Query: 172 AQNTIDELVLQRLRTKSTI 190
            ++T+++ +L     K  +
Sbjct: 877 IKDTVEDRILALQDEKRKM 895


>gi|158261897|dbj|BAF83126.1| unnamed protein product [Homo sapiens]
          Length = 910

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 797


>gi|327532753|ref|NP_001192192.1| DNA repair and recombination protein RAD54B 3 [Homo sapiens]
 gi|119612118|gb|EAW91712.1| hCG2009220, isoform CRA_b [Homo sapiens]
          Length = 726

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 454 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 513

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 514 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 571

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 572 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 613


>gi|119612120|gb|EAW91714.1| hCG2009220, isoform CRA_d [Homo sapiens]
          Length = 499

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 227 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 286

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 287 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 344

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 345 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 386


>gi|114620947|ref|XP_528193.2| PREDICTED: RAD54 homolog B isoform 2 [Pan troglodytes]
 gi|114620949|ref|XP_001142757.1| PREDICTED: RAD54 homolog B isoform 1 [Pan troglodytes]
          Length = 910

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 797


>gi|6912622|ref|NP_036547.1| DNA repair and recombination protein RAD54B 1 [Homo sapiens]
 gi|51316548|sp|Q9Y620|RA54B_HUMAN RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|4959396|gb|AAD34331.1|AF112481_1 RAD54B protein [Homo sapiens]
 gi|12805023|gb|AAH01965.1| RAD54 homolog B (S. cerevisiae) [Homo sapiens]
 gi|119612119|gb|EAW91713.1| hCG2009220, isoform CRA_c [Homo sapiens]
 gi|261859006|dbj|BAI46025.1| RAD54 homolog B [synthetic construct]
          Length = 910

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 756 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 797


>gi|326481296|gb|EGE05306.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 1690

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1340 PDKRLLQYDCGKLQQLDKLLRKLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1399

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1400 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1458

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1459 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1499


>gi|289613314|emb|CBI59727.1| unnamed protein product [Sordaria macrospora]
          Length = 1846

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 14/156 (8%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
             +K   +    K++AL+ ++   +A     ++       L            +++     
Sbjct: 1501 PDKRLLQYDCGKLQALDKLLRKLQAGGHRALIFTQMTKYL-----RLDGATKVEQRQILT 1555

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              +N + +I        S G G+NL  G + ++F+   W+    +Q  +R       + G
Sbjct: 1556 DRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDRC-----HRIG 1609

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1610 QTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1645


>gi|260951227|ref|XP_002619910.1| hypothetical protein CLUG_01069 [Clavispora lusitaniae ATCC 42720]
 gi|238847482|gb|EEQ36946.1| hypothetical protein CLUG_01069 [Clavispora lusitaniae ATCC 42720]
          Length = 1061

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 21/167 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------P 89
            Y  +++ W      K+  L  +I++       I+V   F   L  L+K            
Sbjct: 879  YVLDKEKWH--DSGKVAKLLDLIKQTIMKKEKILVFSLFTQMLDILEKVLSFANISFLRL 936

Query: 90   QGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G+T       I  + + +  IP+      + G G+NL    N+++ F   ++  + +Q 
Sbjct: 937  DGQTSVDTRQDIIDRFYEDEDIPVFLLSTKAGGFGINLVAANNVVI-FDQSFNPHDDKQA 995

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +R       + G    V V  LI++NTIDE +L     K  +   +
Sbjct: 996  EDR-----AHRVGQTNEVMVTKLISENTIDENILMLAENKLQLDQSI 1037


>gi|154271055|ref|XP_001536381.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           NAm1]
 gi|150409604|gb|EDN05048.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           NAm1]
          Length = 1275

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+           +       +     
Sbjct: 770 SGKMQVVKSLLELWRDTGHKTLLFTQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQK 829

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 830 MVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 883

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 884 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|115491909|ref|XP_001210582.1| hypothetical protein ATEG_00496 [Aspergillus terreus NIH2624]
 gi|114197442|gb|EAU39142.1| hypothetical protein ATEG_00496 [Aspergillus terreus NIH2624]
          Length = 894

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR--------- 92
           +          K+  L+ ++         I++   F + L  LQ    Q R         
Sbjct: 642 DIDESLVTASGKMLLLDRLVSCLLKKEHKILIFSQFKTQLDILQDWATQLRSWNCCRIDG 701

Query: 93  ---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                D+         + K  +      + G G+NL    + ++ +   W+ ++  Q   
Sbjct: 702 AISQSDRREQIKAFNTDPKFKIFLLSTRAGGQGINLT-AADTVILYDSDWNPQQDLQA-- 758

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 759 ---QDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 805


>gi|301093032|ref|XP_002997365.1| DNA repair and recombination protein RAD26 [Phytophthora infestans
           T30-4]
 gi|262110763|gb|EEY68815.1| DNA repair and recombination protein RAD26 [Phytophthora infestans
           T30-4]
          Length = 1039

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDPCTIQ 102
           K+  LE ++   K      ++       L  +Q     KA    R      +++    + 
Sbjct: 669 KMIVLEKLLSVWKKRRQRTLIFSRSTRMLDIIQLFLITKATKYSRLDGNTKVEERLQMVN 728

Query: 103 EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N  +    +      + G GLNLQ   N+++ F   W+     Q        R  + G
Sbjct: 729 DFNSSESNTTVFLISTRAGGVGLNLQSATNVVI-FDPSWNPAHDCQA-----QDRAYRIG 782

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V VY LI   TI+E++  R   K  + D  L  
Sbjct: 783 QTKDVQVYRLITLGTIEEMIYVRQIYKQQLSDTTLKG 819


>gi|326476006|gb|EGE00016.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 1690

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1340 PDKRLLQYDCGKLQQLDKLLRKLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1399

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1400 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1458

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1459 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1499


>gi|312079660|ref|XP_003142270.1| transcription activator [Loa loa]
 gi|307762566|gb|EFO21800.1| transcription activator [Loa loa]
          Length = 1062

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N    +D  E  
Sbjct: 396 VKIYVGLSKMQREWYTKILMKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 455

Query: 47  HWKEVHDEKIK--------ALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFP 89
                    +            ++  K   + +++    +  L  L         +    
Sbjct: 456 PPYTTDQHLVDNSGKMVLLDKLLVKLKEQGSRVLIFSSMSRMLDLLEDYCWWRSYRYCRL 515

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T+ D+   +I E+N+      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 516 DGQTVHDERQKSIDEFNKPDSDKFIFMLTTRAGGLGINLT-AADVVIIYDSDWNPQVDLQ 574

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I  NT+DE +++R   K  +  +++ 
Sbjct: 575 AMDR-----AHRIGQKKQVRVFRFITDNTVDERIIERAEMKLHLDSIVIQ 619


>gi|83774254|dbj|BAE64379.1| unnamed protein product [Aspergillus oryzae]
          Length = 1590

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1265 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1324

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1325 TKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1383

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1384 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1424


>gi|156839119|ref|XP_001643254.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113856|gb|EDO15396.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 849

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDP--C 99
              K++ ++ +I         ++V   F + L  L+        ++F    T+D +    
Sbjct: 597 TSGKLQTMQDLILPLVKKKHKVLVFSQFTNMLDLLEDWCELNSLESFRIDGTIDSESRKE 656

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+++N+   K  +      + G G+NL    + +V F   W+ +   Q ++R       
Sbjct: 657 QIEQFNKPGDKHNIFLLSTRAAGLGINL-IAADTVVLFDSDWNPQVDLQAMDRC-----Y 710

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  + V VY L   NT++ ++L R   K  ++ +++   +  T+ 
Sbjct: 711 RIGQIKPVVVYRLCCDNTVEHVILTRAANKRKLEKMVIQMGRFNTLK 757


>gi|327273932|ref|XP_003221733.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like [Anolis
           carolinensis]
          Length = 1036

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 393 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 452

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + I++       L  L+             
Sbjct: 453 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRILIFSQMTRVLDILEDYCMWRNYEYCRL 512

Query: 90  QGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 513 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 571

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 572 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 616


>gi|302511611|ref|XP_003017757.1| hypothetical protein ARB_04640 [Arthroderma benhamiae CBS 112371]
 gi|291181328|gb|EFE37112.1| hypothetical protein ARB_04640 [Arthroderma benhamiae CBS 112371]
          Length = 1706

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1356 PDKRLLQYDCGKLQQLDKLLRKLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1415

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1416 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1474

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1475 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1515


>gi|255725568|ref|XP_002547713.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135604|gb|EER35158.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 847

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           EEK    +   KI  L  ++ +  A    I++  ++   L  L+K               
Sbjct: 541 EEKFHLTLSSGKINVLIPLLLEIVAQKEKIVLISNYTQTLDLLEKVLSKINLTFSRLDGS 600

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     ++++N    I +      S G G+NL  G + L+ F   W+     Q + R
Sbjct: 601 TATNIRSKIVKQFNSNPNIHVFLLSSKSGGMGINL-VGASRLILFDNDWNPATDLQSMSR 659

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I      + G  +  F+Y +     IDE + QR   K+ +    L+
Sbjct: 660 I-----HRDGQTKPCFIYRIFTTGCIDEKIFQRQLVKNRLSSKFLD 700


>gi|294947224|ref|XP_002785281.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239899054|gb|EER17077.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 945

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 53  DEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+  LE +I +       +++   F   L  ++          +      +  K    
Sbjct: 398 SGKLVFLEKLIPQLREKKEKLLIFSQFKIVLDIIEDWLTWKKLPVERLDGSVSGGKRQAA 457

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N+ K           + G G+NL    +++V +   W+ +   Q   R       +
Sbjct: 458 IDRFNDKKHDSFAFLLTTRAGGVGINLT-SASVVVIYDSDWNPQNDNQAQARC-----HR 511

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V VY L+ +N+ +E + +    K  ++  +++++
Sbjct: 512 IGQTKTVRVYRLLTRNSYEEKLFEIASKKLGLEQAIMSSV 551


>gi|207346437|gb|EDZ72930.1| YDR334Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1514

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1221 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1280

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1281 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1339

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1340 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVI 1394

Query: 196  N 196
             
Sbjct: 1395 Q 1395


>gi|325188450|emb|CCA22986.1| hypothetical protein SELMODRAFT_450747 [Albugo laibachii Nc14]
          Length = 1623

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++ L V++ +        ++     S L  L++               
Sbjct: 872  PDKKLVQFDCGKLQELAVLLCRLRREGHRCLIFTQMTSMLNILEQFLNLHGHTYFRLDGS 931

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++K    ++++N +  I        S G G+NL  G + ++F+   W+     Q    
Sbjct: 932  TRVEKRQMLMEKFNQDSSIFCFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDAQA--- 987

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G  R V +Y L+  +T+++ +L++ + K  ++ L++
Sbjct: 988  --QDRAHRIGQTREVHIYRLVTLSTVEDNILRKAQQKRNLETLVM 1030


>gi|119178020|ref|XP_001240720.1| hypothetical protein CIMG_07883 [Coccidioides immitis RS]
          Length = 1198

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 737 SGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQG 796

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 797 MVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDLQARERAW-----R 850

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 851 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 893


>gi|118781335|ref|XP_311417.3| AGAP010700-PA [Anopheles gambiae str. PEST]
 gi|116130122|gb|EAA07020.3| AGAP010700-PA [Anopheles gambiae str. PEST]
          Length = 1026

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYDE-------EKHWK 49
           K QRE Y  +  ++I+  N A K  K       +QL    N    +D           + 
Sbjct: 367 KMQREWYTKILMKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 426

Query: 50  EVHDE-KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKD 97
            + +  K+  L+ ++ K     + +++       L  L         Q     G+T  +D
Sbjct: 427 LLENAGKMVVLDKLLRKLQEQDSRVLIFSQMTRMLDILEDFCHWRGYQYCRLDGQTPHED 486

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I ++N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 487 RSNMIADYNAENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 541

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 542 -AHRIGQKKQVRVFRLITENTVEEKIVERAEVKLKLDKLVIQ 582


>gi|70982085|ref|XP_746571.1| DNA repair protein Rhp26/Rad26 [Aspergillus fumigatus Af293]
 gi|66844194|gb|EAL84533.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus fumigatus
           Af293]
 gi|159122195|gb|EDP47317.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus fumigatus
           A1163]
          Length = 1214

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 759 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVRSLSGFNYRRMDGTTPIQNRQT 818

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 819 MVDEFNNDPNIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 872

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 873 LGQKRDVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 915


>gi|323349205|gb|EGA83435.1| Swr1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1469

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1176 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1235

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1236 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1294

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1295 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVI 1349

Query: 196  N 196
             
Sbjct: 1350 Q 1350


>gi|190404725|gb|EDV07992.1| helicase SWR1 [Saccharomyces cerevisiae RM11-1a]
          Length = 1514

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1221 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1280

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1281 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1339

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1340 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVI 1394

Query: 196  N 196
             
Sbjct: 1395 Q 1395


>gi|6320541|ref|NP_010621.1| Swr1p [Saccharomyces cerevisiae S288c]
 gi|6136666|sp|Q05471|SWR1_YEAST RecName: Full=Helicase SWR1; AltName: Full=Swi2/Snf2-related 1
 gi|1230661|gb|AAB64770.1| Ydr334wp [Saccharomyces cerevisiae]
 gi|151942310|gb|EDN60666.1| SWR1 complex component [Saccharomyces cerevisiae YJM789]
 gi|285811352|tpg|DAA12176.1| TPA: Swr1p [Saccharomyces cerevisiae S288c]
          Length = 1514

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1221 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1280

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1281 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1339

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1340 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVI 1394

Query: 196  N 196
             
Sbjct: 1395 Q 1395


>gi|323454538|gb|EGB10408.1| hypothetical protein AURANDRAFT_23375 [Aureococcus anophagefferens]
          Length = 685

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEG--KIPLLFAH 115
              ++V     + L  L+              G T  ++    I+ +N       +    
Sbjct: 459 GHRVLVFSQMTALLDVLEDFMAMRDYEYCRIDGNTSYEERDDLIEAYNAPNSDKFVFLLS 518

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ   + +V +   W+ +   Q ++R       + G K+ V VY L+  NT
Sbjct: 519 TRAGGLGINLQT-ADTVVLYDSDWNPQADLQAMDR-----AHRIGQKKPVHVYRLVTANT 572

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           I+E +++R + K  +  +++ 
Sbjct: 573 IEEKIVERAKKKLKLDAMVVQ 593


>gi|256269512|gb|EEU04799.1| Swr1p [Saccharomyces cerevisiae JAY291]
 gi|259145571|emb|CAY78835.1| Swr1p [Saccharomyces cerevisiae EC1118]
          Length = 1514

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1221 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1280

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1281 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1339

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++   K  + ++++
Sbjct: 1340 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVI 1394

Query: 196  N 196
             
Sbjct: 1395 Q 1395


>gi|198455729|ref|XP_001357539.2| GA21216 [Drosophila pseudoobscura pseudoobscura]
 gi|198135371|gb|EAL24661.2| GA21216 [Drosophila pseudoobscura pseudoobscura]
          Length = 1035

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 375 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 434

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 435 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWKNYNYCRLDGQTPHED 494

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 495 RNRQIQEYNMENSTKFVFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 549

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 550 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 593


>gi|195346399|ref|XP_002039753.1| GM15831 [Drosophila sechellia]
 gi|194135102|gb|EDW56618.1| GM15831 [Drosophila sechellia]
          Length = 2550

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1666 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1725

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1726 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1779

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1780 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1815


>gi|195148944|ref|XP_002015422.1| GL11075 [Drosophila persimilis]
 gi|194109269|gb|EDW31312.1| GL11075 [Drosophila persimilis]
          Length = 1033

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 375 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 434

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 435 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWKNYNYCRLDGQTPHED 494

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 495 RNRQIQEYNMENSTKFVFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 549

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 550 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 593


>gi|302810562|ref|XP_002986972.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
 gi|300145377|gb|EFJ12054.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
          Length = 849

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 23/155 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI AL  I++K  A       +V   F+S L   +    Q               K 
Sbjct: 675 SSAKITALLSILDKTRAKDPSIKTVVFSQFSSMLKLAEAPLTQAGYKFVKLQGGMSAKKR 734

Query: 98  PCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +         +      + G GLNL    N +V    WW+    +Q ++R+   
Sbjct: 735 DEAMEAFKSTSKDSPTVFLLSLKAAGVGLNLVSASN-VVMLDPWWNPAAEEQAMDRV--- 790

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + G  R V V+ L+A ++I+E +LQ    K  
Sbjct: 791 --HRLGQTRDVHVFRLVATDSIEERLLQMQEKKRA 823


>gi|320581104|gb|EFW95326.1| transcriptional accessory protein [Pichia angusta DL-1]
          Length = 1878

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLA-----RLQKAFP-------QGRTLDKDPCTI--QEWNEGKIPLLFA 114
               ++       L       L+K  P        G T  +    +  +  N+  I +L  
Sbjct: 1655 HRALIFCQMKDMLDMVENDLLKKHMPGVTYLRLDGSTEPRKRQDVVRKFNNDPSIDVLLL 1714

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI ++
Sbjct: 1715 TTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITKD 1768

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K  I   ++N
Sbjct: 1769 TLEEKIMGLQKFKMNIASTIIN 1790


>gi|302817780|ref|XP_002990565.1| hypothetical protein SELMODRAFT_185367 [Selaginella moellendorffii]
 gi|300141733|gb|EFJ08442.1| hypothetical protein SELMODRAFT_185367 [Selaginella moellendorffii]
          Length = 1296

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 21/175 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQ 90
           +E +H  E    K+  L+ ++ K  A+   +++   F   L  L+          +    
Sbjct: 584 EENRHRIE-SSGKLSLLDKMMVKLKASGHRVLLYSQFQHMLDILEDYLTHKNWSYERIDG 642

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T  +    I  +N              + G G+NL    + +V +   W+     Q +
Sbjct: 643 NVTGAERQIRIDRFNAPNSNRFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHADLQAM 701

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            R       + G K  V +Y L+ + +I+E ++Q  + K  ++ L++  +K + +
Sbjct: 702 AR-----AHRLGQKNMVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRMKTQVL 751


>gi|194754060|ref|XP_001959323.1| GF12812 [Drosophila ananassae]
 gi|190620621|gb|EDV36145.1| GF12812 [Drosophila ananassae]
          Length = 3199

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ +  A+   +++       L  L+              G T  +     ++
Sbjct: 1662 KLQTLDRLLRQLKADGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQMHME 1721

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1722 RFNGDKRIFCFILSTRSGGVGINL-MGADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1775

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1776 TRDVHIYRLVSEKTIEVNILKKANQKRMLSDMAIEG 1811


>gi|50293969|ref|XP_449396.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690652|sp|Q6FK48|SWR1_CANGA RecName: Full=Helicase SWR1
 gi|49528710|emb|CAG62372.1| unnamed protein product [Candida glabrata]
          Length = 1450

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L +++++        ++       L  L++             G 
Sbjct: 1168 PDKSLLQYDCGKLQKLAILLQQLKDGGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGA 1227

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + KI +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1228 TKIEDRQILTERFNSDPKITVFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1286

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + D+++ 
Sbjct: 1287 C-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQ 1327


>gi|6599160|emb|CAB63724.1| hypothetical protein [Homo sapiens]
          Length = 580

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ+                 + 
Sbjct: 308 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 367

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 368 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 425

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 426 ----RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK 467


>gi|225468600|ref|XP_002264131.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1147

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+        Q R LD           ++++N   ++ ++    
Sbjct: 992  GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 1051

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V  L  ++T+
Sbjct: 1052 KAASLGLNMVAACHVLLL-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVLRLTVKDTV 1105

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1106 EDRILALQQKKREM 1119


>gi|225468256|ref|XP_002267495.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]
          Length = 835

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+        Q R LD           ++++N   ++ ++    
Sbjct: 680 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 739

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    ++L+   LWW+     Q I+R       + G  R V V  L  ++T+
Sbjct: 740 KAASLGLNMVAACHVLLL-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVLRLTVKDTV 793

Query: 177 DELVLQRLRTKSTI 190
           ++ +L   + K  +
Sbjct: 794 EDRILALQQKKREM 807


>gi|225468252|ref|XP_002267335.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 867

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+        Q R LD           ++++N   ++ ++    
Sbjct: 712 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 771

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    ++L+   LWW+     Q I+R       + G  R V V  L  ++T+
Sbjct: 772 KAASLGLNMVAACHVLLL-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVLRLTVKDTV 825

Query: 177 DELVLQRLRTKSTI 190
           ++ +L   + K  +
Sbjct: 826 EDRILALQQKKREM 839


>gi|225467009|ref|XP_002262712.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
          Length = 781

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+        Q R LD           ++++N   ++ ++    
Sbjct: 626 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 685

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    ++L+   LWW+     Q I+R       + G  R V V  L  ++T+
Sbjct: 686 KAASLGLNMVAACHVLLL-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVLRLTVKDTV 739

Query: 177 DELVLQRLRTKSTI 190
           ++ +L   + K  +
Sbjct: 740 EDRILALQQKKREM 753


>gi|147852279|emb|CAN82215.1| hypothetical protein VITISV_020421 [Vitis vinifera]
          Length = 1435

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+        Q R LD           ++++N   ++ ++    
Sbjct: 1253 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 1312

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V  L  ++T+
Sbjct: 1313 KAASLGLNMVAACHVLLL-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVLRLTVKDTV 1366

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1367 EDRILALQQKKREM 1380


>gi|302803789|ref|XP_002983647.1| hypothetical protein SELMODRAFT_155996 [Selaginella moellendorffii]
 gi|300148484|gb|EFJ15143.1| hypothetical protein SELMODRAFT_155996 [Selaginella moellendorffii]
          Length = 1296

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 21/175 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQ 90
           +E +H  E    K+  L+ ++ K  A+   +++   F   L  L+          +    
Sbjct: 584 EENRHRIE-SSGKLSLLDKMMVKLKASGHRVLLYSQFQHMLDILEDYLTHKNWSYERIDG 642

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T  +    I  +N              + G G+NL    + +V +   W+     Q +
Sbjct: 643 NVTGAERQIRIDRFNAPNSNRFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHADLQAM 701

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            R       + G K  V +Y L+ + +I+E ++Q  + K  ++ L++  +K + +
Sbjct: 702 AR-----AHRLGQKNMVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRMKTQVL 751


>gi|302664731|ref|XP_003023992.1| hypothetical protein TRV_01854 [Trichophyton verrucosum HKI 0517]
 gi|291188017|gb|EFE43374.1| hypothetical protein TRV_01854 [Trichophyton verrucosum HKI 0517]
          Length = 1692

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1342 PDKRLLQYDCGKLQQLDKLLRKLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1401

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1402 TKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1460

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1461 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1501


>gi|301114327|ref|XP_002998933.1| DNA excision repair protein ERCC-6 [Phytophthora infestans T30-4]
 gi|262111027|gb|EEY69079.1| DNA excision repair protein ERCC-6 [Phytophthora infestans T30-4]
          Length = 1052

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           +GE+ E F +AS + K + L      + E+KH   V  +    L  I+E           
Sbjct: 593 EGESDEPFGAASASGKMIVLQKVLTLWKEQKHRVLVFTQTRSML-DILES---------- 641

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILV 133
            F S L            + +    +  +N     L        + G G+NL  G + +V
Sbjct: 642 -FMSRLGHACTRLDGTTGVAERQQRLDAFNAPDSNLFAFLLTTRAGGIGVNL-VGADRVV 699

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+     Q  ER       + G ++ V VY L+   TI+E +  R   K  +   
Sbjct: 700 VFDPDWNPSTDVQARERAW-----RIGQQKPVTVYRLVTAGTIEEKIYHRQIFKQYLTSK 754

Query: 194 LLNALKKE 201
           +L+  K++
Sbjct: 755 VLHDAKRK 762


>gi|225678415|gb|EEH16699.1| lymphoid specific helicase variant3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 892

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +    I++   F + L  LQ                  +       I  +N +    +  
Sbjct: 657 SKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQADRQAQIAAFNTDPNYRIFL 716

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 717 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 770

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+++ +L++  +K  ++ L++   K
Sbjct: 771 GTVEQTLLEKADSKRKLEKLVIQKGK 796


>gi|195146980|ref|XP_002014461.1| GL19201 [Drosophila persimilis]
 gi|198473550|ref|XP_001356340.2| GA19213 [Drosophila pseudoobscura pseudoobscura]
 gi|194106414|gb|EDW28457.1| GL19201 [Drosophila persimilis]
 gi|198138009|gb|EAL33403.2| GA19213 [Drosophila pseudoobscura pseudoobscura]
          Length = 833

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQKA----FPQGRTLDKDPC 99
              K + L+ ++ K       +++   F   L       R++K           + +   
Sbjct: 637 DSGKFEFLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYMRIRKHGFCRLDGATAVKERQD 696

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N +  I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 697 LITDFNVDDNIFVFLLSTKAGGVGINLTAADTCIIH-DIDFNPYNDKQAEDRC-----HR 750

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G +R V +Y L+A++TI+E +L     K  ++  + +  K E 
Sbjct: 751 MGQQRPVTIYRLVAESTIEEGILMAAEEKLKLEKEITSTEKGEG 794


>gi|167375276|ref|XP_001739827.1| transcription regulatory protein SNF2 [Entamoeba dispar SAW760]
 gi|165896374|gb|EDR23803.1| transcription regulatory protein SNF2, putative [Entamoeba dispar
           SAW760]
          Length = 756

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 26  ASKTVKCLQLANGAVYY----DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            +      ++ N         D           K+K +  ++++        ++      
Sbjct: 393 LAAIDTLRKICNHPHLINKTEDLTPETIYKESSKLKYVCDLLKQFQKEGHKALIFCQTRQ 452

Query: 80  DLARLQKAFPQGRTL----------DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYG 128
            L  +++     +            +K P  I ++N    + +        G G+NL  G
Sbjct: 453 MLNIIEQMMLNEKFKYLRMDGLVSSNKRPEYISQFNNDPTVLVFILTTRVGGLGINLT-G 511

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+     Q  ER       + G  R V +Y LI   TI+E + Q+   K 
Sbjct: 512 ADRVIMYDPDWNPTVDSQAKERTL-----RIGQDRDVIIYRLICSGTIEEHIYQKQMAKE 566

Query: 189 TIQDLLL 195
            + D +L
Sbjct: 567 ILSDKIL 573


>gi|119487132|ref|XP_001262421.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
           181]
 gi|119410578|gb|EAW20524.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
           181]
          Length = 1214

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 759 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVRSLSGFNHRRMDGTTPIQNRQT 818

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 819 MVDEFNNDPNIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 872

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 873 LGQKRDVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 915


>gi|255725912|ref|XP_002547882.1| hypothetical protein CTRG_02179 [Candida tropicalis MYA-3404]
 gi|240133806|gb|EER33361.1| hypothetical protein CTRG_02179 [Candida tropicalis MYA-3404]
          Length = 818

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
            D+     + +  K + L+ ++ K   N   +++   F   +  L+  F           
Sbjct: 575 TDKFMEVLKKNSCKFQMLDQLLSKLLPNGHKLLIFCQFTKVMELLESYFDYFEIKTCYLD 634

Query: 95  -----DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                D     I ++N   +  +      + G GLNL    + ++ +   W+ +   Q I
Sbjct: 635 GTVSHDIRQEQIDDFNNDPESKIFLLSTRAGGLGLNLT-AADTVILWDSDWNPQVDLQAI 693

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R+      + G  + V +Y  + +++I+E++L R  +K  ++ L++
Sbjct: 694 DRV-----HRIGQTKPVKIYRFMVKDSIEEILLSRSGSKRMLEKLVM 735


>gi|255075383|ref|XP_002501366.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226516630|gb|ACO62624.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 961

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKANAA--PIIVAYHFNSDLA----RLQK-AFPQGRTLDKDPCTIQEWN 105
           D  +K L  +    N      IV   + S +     RL+K  F   + L   P T +  N
Sbjct: 791 DALLKGLNDMRSGKNGHLNKAIVFSQYTSMIEIVDWRLKKDRFTVAKLLGSMPITQRAAN 850

Query: 106 ------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +  + ++     S G GLNLQ   N +     WW+     Q I      R  + 
Sbjct: 851 LKAFREDPNVSVILMSLKSGGEGLNLQ-AANYVFVLEPWWNPAVEMQAI-----MRAHRI 904

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V       ++TI+E ++Q    K  + +  ++ 
Sbjct: 905 GQTRGVTAVRFSTKDTIEERMMQLQEKKKLVFEGCMDG 942


>gi|14028669|gb|AAK52454.1|AF325921_1 DNA-dependent ATPase SNF2H [Mus musculus]
          Length = 1051

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 49  --------KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K       +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQSSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 588 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 632


>gi|320034068|gb|EFW16014.1| DNA repair and recombination protein RAD26 [Coccidioides posadasii
           str. Silveira]
          Length = 1198

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 737 SGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQG 796

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 797 MVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDLQARERAW-----R 850

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 851 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 893


>gi|299756460|ref|XP_001829349.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
 gi|298411686|gb|EAU92309.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
          Length = 1155

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
               K+ AL   + +          +V   F S L  +Q            F     + K 
Sbjct: 977  SSTKLDALVQNLRRLRDQDPCFRAVVFSQFTSFLDLIQVVLTRERFEHYRFDGTMDVKKR 1036

Query: 98   PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++     K  +L     + G GLNL    N +     WW+     Q I+R+    
Sbjct: 1037 GAAISDFKAPSRKPKILVVSLKAGGVGLNLT-AANHVFMMDCWWNAATENQAIDRV---- 1091

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G ++ V+V + +  NTI+  +LQ  + K+ I +      +
Sbjct: 1092 -HRIGQEKTVYVKHFVISNTIEGRILQIQKRKTAIVNEAFKGTQ 1134


>gi|24656962|ref|NP_726065.1| domino, isoform D [Drosophila melanogaster]
 gi|21645213|gb|AAM70870.1| domino, isoform D [Drosophila melanogaster]
          Length = 3183

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1772

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1773 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|67904180|ref|XP_682346.1| hypothetical protein AN9077.2 [Aspergillus nidulans FGSC A4]
 gi|74680483|sp|Q5ARK3|SWR1_EMENI RecName: Full=Helicase swr1
 gi|40742720|gb|EAA61910.1| hypothetical protein AN9077.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++    A     ++       L  L++             G 
Sbjct: 1321 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGT 1380

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1381 TKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1439

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1440 C-----HRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQ 1480


>gi|229914880|gb|ACQ90605.1| SWI/SNF helicase-like protein [Eutrema halophilum]
          Length = 768

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
             +   K + L  ++         +++   + S L  L+              G T   D
Sbjct: 588 HVMLSAKCRTLAELLPSMKQSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTD 647

Query: 98  PCTIQE-WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             TI + +N  K I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 648 RQTIVDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQIDRQAEDRC---- 702

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 703 -HRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 743


>gi|294658278|ref|XP_460608.2| DEHA2F05676p [Debaryomyces hansenii CBS767]
 gi|202953010|emb|CAG88933.2| DEHA2F05676p [Debaryomyces hansenii]
          Length = 1161

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R+   +    N  +    +   K  QL    +  ++        ++ +  ++ ++E    
Sbjct: 949  RDKIAEFYNINYSSNGKTTNMQKIRQL----IQENKGFTPSAKMEKCMHLIKDVLENYPD 1004

Query: 69   APIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPAS 118
              II+   F S    ++      +           LD+   TI+++ +G   +L     +
Sbjct: 1005 EKIIIFSQFLSLFDLMKLVLANEKIPFLRYDGSMSLDEKNSTIKQFYQGSTKVLLISLRA 1064

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL L    ++++    +W+    +Q ++R       + G +R V V+ ++ + +++ 
Sbjct: 1065 GNVGLTLTCASHVIIM-DPFWNPYVEEQAMDR-----AHRIGQQRDVRVHRILTEGSVEG 1118

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++     K  I    L+
Sbjct: 1119 RIMTLQNEKKEIISGALD 1136


>gi|326912967|ref|XP_003202815.1| PREDICTED: transcription termination factor 2-like [Meleagris
            gallopavo]
          Length = 1176

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-- 101
               +  L+ I     +   +V   + S L           L+ +   G    K    +  
Sbjct: 1008 SHLLAELKTIQSHPESQKSVVVSQWTSMLKVVAVHLQRLGLKYSVVDGSVNPKQRMDVVE 1067

Query: 102  QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N  K P ++     + G GLNL  GGN L    + W+    +Q  +RI      + G
Sbjct: 1068 EFNNNPKGPQVMLVSLLAGGVGLNLT-GGNHLFLLDMHWNPALEEQACDRI-----YRVG 1121

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             ++ V ++  + + T++E ++Q    K  +   +L A K ET
Sbjct: 1122 QQKDVVIHRFVCEGTVEEKIVQLQTKKKGLAQQVL-AGKGET 1162


>gi|321469421|gb|EFX80401.1| hypothetical protein DAPPUDRAFT_318579 [Daphnia pulex]
          Length = 1037

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE+Y  +   +I+  N A K  K       +QL    N    +D  E  
Sbjct: 366 VKVYIGLSKMQREMYTKILMRDIDIVNGAGKLEKMRLQNILMQLRKCCNHPYLFDGAEPG 425

Query: 47  HWKEVHDE------KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
                 +       K+  L+ ++ K  A  + +++       L  L+             
Sbjct: 426 PPYTTDEHIVYNCGKMVILDKLLPKLKAQGSRVLIFSQMTRMLDILEDYSLWRGYNYCRL 485

Query: 90  QGRTLDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I+E+N       L      + G G+NL    +++V F   W+ +   Q
Sbjct: 486 DGSTPHEDRHRQIEEYNAPDSKKFLFMLSTRAGGLGINL-ATADVVVLFDSDWNPQMDLQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E ++++   K  +  L++ 
Sbjct: 545 AMDR-----AHRIGQLKQVRVFRFITDNTVEEKIVEKAEVKLRLDKLVIQ 589


>gi|149240093|ref|XP_001525922.1| helicase SWR1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450045|gb|EDK44301.1| helicase SWR1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1764

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++    AN    ++       L  L++             G 
Sbjct: 1484 PDKTLLQYDCGKLQKLATLMRDLVANGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1543

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1544 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1602

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1603 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1643


>gi|194881876|ref|XP_001975047.1| GG22110 [Drosophila erecta]
 gi|190658234|gb|EDV55447.1| GG22110 [Drosophila erecta]
          Length = 3193

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1658 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1717

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1718 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1771

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1772 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1807


>gi|195380477|ref|XP_002048997.1| GJ21347 [Drosophila virilis]
 gi|194143794|gb|EDW60190.1| GJ21347 [Drosophila virilis]
          Length = 1021

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|309358145|emb|CAP34504.2| CBR-ISW-1 protein [Caenorhabditis briggsae AF16]
          Length = 1019

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N    +D  E  
Sbjct: 366 VKVYVGLSKMQREWYTKILLKDIDVINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 425

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFP 89
                         K+  L+ ++ +     + +++   F+  L  L+             
Sbjct: 426 PPYTTDQHLVDNCGKMVVLDKLLSRLQEQGSRVLIFSQFSRMLDLLEDYCWWRKYEYCRL 485

Query: 90  QGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T   D    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 486 DGSTAHVDRTSAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQSDLQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI +NT+D+ ++++   K  + ++++ 
Sbjct: 545 AMDR-----AHRIGQKKQVKVFRLITENTVDDRIIEKAEAKLRLDNIVIQ 589


>gi|294878780|ref|XP_002768479.1| hypothetical protein Pmar_PMAR022081 [Perkinsus marinus ATCC 50983]
 gi|239870964|gb|EER01197.1| hypothetical protein Pmar_PMAR022081 [Perkinsus marinus ATCC 50983]
          Length = 799

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQG 91
            ++   E    K++ L  ++   +      IV    +  L  ++ +              
Sbjct: 543 PDRDMIERDCGKMRKLGELLTTLRDGGHKCIVFTQMSKMLDIIEASMNLHGFTYVRLDGS 602

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    ++ +N   KI    A   + G G+NL  G + ++F+   W+    +Q ++R
Sbjct: 603 TPVLRRQLVVEAFNKSPKIFAFIASTRAGGVGINLT-GADCVIFYDSDWNPAMDRQAMDR 661

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V ++ L++ +TI+E +  +   K  + D++++
Sbjct: 662 C-----HRIGQTRDVHIFRLLSHHTIEENIFHKQLQKRMLDDVVVD 702


>gi|242017388|ref|XP_002429171.1| TATA-binding protein-associated factor, putative [Pediculus humanus
            corporis]
 gi|212514049|gb|EEB16433.1| TATA-binding protein-associated factor, putative [Pediculus humanus
            corporis]
          Length = 1746

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 20/144 (13%)

Query: 67   NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPC--------TIQEWN-EGKIPLL 112
            N    ++     S L  +     +K  P    L  D           + ++N +  I +L
Sbjct: 1534 NQHRALIFCQLKSMLDIIESDLLKKHLPNVSYLRLDGSIPPSQRHSVVNKFNSDPSIDVL 1593

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI 
Sbjct: 1594 LLTTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLIT 1647

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K    + +++
Sbjct: 1648 RGTLEEKIMGLQKFKLLTANTIIS 1671


>gi|8953897|gb|AAF82185.1| helicase DOMINO A [Drosophila melanogaster]
          Length = 3201

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1772

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1773 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|294658394|ref|XP_002770778.1| DEHA2F08470p [Debaryomyces hansenii CBS767]
 gi|202953094|emb|CAR66304.1| DEHA2F08470p [Debaryomyces hansenii]
          Length = 1923

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 20/143 (13%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTI-QEWNE-GKIPLLF 113
                ++       L  ++    +            G T  +D  +I +++NE   I +L 
Sbjct: 1703 EHRALIFCQLKDMLDIVENELLKKYLPSVTYTRLDGSTDPRDRQSIVRKFNEDPSIDVLL 1762

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +
Sbjct: 1763 LTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITK 1816

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            NT++E ++   + K  I   ++N
Sbjct: 1817 NTLEEKIMGLQKFKMNIASTIVN 1839


>gi|195121866|ref|XP_002005439.1| GI19071 [Drosophila mojavensis]
 gi|193910507|gb|EDW09374.1| GI19071 [Drosophila mojavensis]
          Length = 3199

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L+ ++ +   +   +++       L  L+              G T  +    + +
Sbjct: 1681 KLQTLDRLLRQLKVDGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1740

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1741 RFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1794

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1795 TRDVHIYRLVSEKTIEVNILKKANQKRMLSDMAIEG 1830


>gi|167462178|ref|ZP_02327267.1| SNF2-related protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 421

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY +FQ+    ++ G+ +    + +K +   QLA               + EK + L  
Sbjct: 237 KQYREFQKHRMIEIDGKTLVGDTTLTKMLYLRQLAG------------MYNPEKPERLRE 284

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E  +   +IV Y+F ++   +Q            ++ D   +  + E    +      
Sbjct: 285 LLESTSDR-VIVFYNFRAEFEVIQNLCQTLERPLSMINGDGRDLTAYLERDDSVTAVQFQ 343

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTI 176
           S   G NLQ   +  V+ S   D    +Q + RI     R+ G +    F YYL+ + +I
Sbjct: 344 SGALGENLQLAKH-AVYMSPPLDSILFEQSLARI-----RRIGQQSDTCFYYYLVTKGSI 397

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           +E + + L+ +      L   L+
Sbjct: 398 EEHIYETLKKRKDFTQYLFEELE 420


>gi|149635666|ref|XP_001513276.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5
           [Ornithorhynchus anatinus]
          Length = 1012

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 370 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 429

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 430 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 489

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   +    I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 490 DGQTPHDERQDSINAYNEPNSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 548

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 549 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 593


>gi|24656966|ref|NP_524833.2| domino, isoform A [Drosophila melanogaster]
 gi|160380691|sp|Q9NDJ2|DOM_DROME RecName: Full=Helicase domino
 gi|21645214|gb|AAM70871.1| domino, isoform A [Drosophila melanogaster]
          Length = 3198

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1772

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1773 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|295674887|ref|XP_002797989.1| SNF2 family helicase/ATPase PasG [Paracoccidioides brasiliensis
           Pb01]
 gi|226280639|gb|EEH36205.1| SNF2 family helicase/ATPase PasG [Paracoccidioides brasiliensis
           Pb01]
          Length = 857

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKD 97
               K+  L+ +I    +    I++   F + L  LQ                  +    
Sbjct: 605 TSSGKMLLLDRLIPCLMSKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQVNR 664

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N +    +      + G G+NL    + ++ F   W+ ++  Q        R 
Sbjct: 665 QAQIAAFNTDPSYRIFLLSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRA 718

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 719 HRIGQTKPVIVYRLATRGTVEQTLLEKADSKRKLEKLVIQKGK 761


>gi|195426563|ref|XP_002061395.1| GK20897 [Drosophila willistoni]
 gi|194157480|gb|EDW72381.1| GK20897 [Drosophila willistoni]
          Length = 3304

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L+ ++ +   +   +++       L  L+              G T  +    + +
Sbjct: 1736 KLQTLDRLLRQLKVDGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1795

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1796 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1849

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1850 TRDVHIYRLVSEKTIEVNILKKANQKRMLSDMAIEG 1885


>gi|149248292|ref|XP_001528533.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448487|gb|EDK42875.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 917

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 38/222 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYD--------EEKHW 48
            QR LY  +  ++I+A N A+K           ++  +  N    +D             
Sbjct: 265 MQRNLYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFDGVEPGPPFTTDEH 324

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKD 97
              + +K+  L+ +++K  A  + +++    +  L  L         Q     G+T   D
Sbjct: 325 LVFNAQKMIILDKLLKKFKAEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHVD 384

Query: 98  P-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R    
Sbjct: 385 RINAIDEYNKPGSEKFVFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR---- 439

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  + V V+  I +N I+E VL+R   K  +  L++ 
Sbjct: 440 -AHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQ 480


>gi|326483055|gb|EGE07065.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton equinum CBS
            127.97]
          Length = 1168

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 988  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1045

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1046 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1104

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1105 -----AHRIGQLRPVMVHRLLVENTVEDRIIALQDKKRQIIEGALD 1145


>gi|326469389|gb|EGD93398.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton tonsurans CBS
            112818]
          Length = 1141

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 948  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1005

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1006 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1064

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1065 -----AHRIGQLRPVMVHRLLVENTVEDRIIALQDKKRQIIEGALD 1105


>gi|324500954|gb|ADY40432.1| Chromatin-remodeling complex ATPase chain isw-1 [Ascaris suum]
          Length = 1053

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLAN----------G 38
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N          G
Sbjct: 384 VKIYVGLSKMQREWYTKILLKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 443

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFP 89
             Y  ++          +    +   K   + +++    +  L  L         Q    
Sbjct: 444 PPYTTDQHLVDNAGKMVLLDKLLKKLKEQGSRVLIFSQMSRMLDLLEDYCWWRNYQYCRL 503

Query: 90  QGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T   D    I E+N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 504 DGQTAHADRQMSIDEFNRPDSEKFIFMLTTRAGGLGINLT-AADVVIIYDSDWNPQVDLQ 562

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I ++T+DE +++R   K  +  +++ 
Sbjct: 563 AMDR-----AHRIGQKKQVRVFRFITESTVDERIIERAEMKLHLDSIVIQ 607


>gi|302844141|ref|XP_002953611.1| hypothetical protein VOLCADRAFT_118418 [Volvox carteri f.
           nagariensis]
 gi|300261020|gb|EFJ45235.1| hypothetical protein VOLCADRAFT_118418 [Volvox carteri f.
           nagariensis]
          Length = 1130

 Score = 98.9 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
             KIK L+ ++ K     + +++   + + L  L+               G  +D+    
Sbjct: 798 SAKIKHLDELLPKLKEKGSRVLLFSQWTTVLDLLEWYMHLRGYTYCRLDGGTQVDERLAL 857

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N  + P  +      + G GLNL  G + ++   + ++ +  +Q  +R       +
Sbjct: 858 VDAFNAPESPYFVFLLSTRAGGQGLNLT-GADTVILHDVDFNPQIDKQAEDR-----AHR 911

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  R V VY LI + T+D  +      K  +   +L  +
Sbjct: 912 LGQTRTVAVYRLITKGTVDSNIQAIAERKLALDHAVLTDV 951


>gi|312212592|emb|CBX92675.1| similar to chromodomain helicase (Chd1) [Leptosphaeria maculans]
          Length = 1610

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 9   RELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
           ++   ++  E  +A N A        +   G    DE          K+  L+ ++ K  
Sbjct: 736 KQSLLNIVMELKKASNHALLFPNAEAKFIRGDATKDETLKALITTSGKMMLLDRLLGKLK 795

Query: 66  ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLF 113
           A+   +++       L  L           +         +    I  +N          
Sbjct: 796 ADGHRVLIFSQMVHMLDILTDYLKLRNYPFQRLDGTVPAAERKIAIDHFNAPGSDDYCFL 855

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ +   Q + R       + G ++ V VY L+++
Sbjct: 856 LSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AHRIGQQKPVSVYRLVSK 909

Query: 174 NTIDELVLQRLRTKSTI 190
           +TI+E +L+R R K  +
Sbjct: 910 DTIEEEILERARNKRML 926


>gi|70989932|ref|XP_749815.1| SWI/SNF family DNA-dependent ATPase [Aspergillus fumigatus Af293]
 gi|66847447|gb|EAL87777.1| SWI/SNF family DNA-dependent ATPase, putative [Aspergillus
           fumigatus Af293]
          Length = 1005

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 51  VHDEKIKALEVIIEK----ANAAPIIVAYHFNS--DLARL---------QKAFPQGRTLD 95
           +   KI     I+E+         II+   F S  DL  +         ++     R  D
Sbjct: 822 ITSSKIDKALEIVEQIQNDGTGDKIIIFSQFTSLLDLMEIPLQRRGWLFRRYDGSMRLAD 881

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    ++        L+     +   GLNL     +++    +W+    +Q I R+    
Sbjct: 882 RHAVVVEFSTNPNCRLMLVSLRAGNAGLNLTAASKVIIL-DPFWNPFVEEQAIGRV---- 936

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLLLNA 197
             + G +R V VY ++  +T+++ +      K  + Q  L +A
Sbjct: 937 -HRIGQQRPVHVYRILTPDTVEDRIQNLQDEKRRLVQGALSDA 978


>gi|302813585|ref|XP_002988478.1| hypothetical protein SELMODRAFT_128101 [Selaginella moellendorffii]
 gi|300143880|gb|EFJ10568.1| hypothetical protein SELMODRAFT_128101 [Selaginella moellendorffii]
          Length = 562

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 33  LQLANGAVYYDEEKHWKEV-HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQ 90
           LQL       + ++  +E+    K+KA  ++++   +    ++   + S L  ++    +
Sbjct: 367 LQLEAQERQEEFDRKVQEIGQSAKLKAAMMVLDMTPHGEKSLIFSQWTSMLDLIEPQLEE 426

Query: 91  G-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        T  +     +   + ++ ++     + G GLNL      ++   +WW
Sbjct: 427 AGIQFSRIDGSMSTRKRVAAIKRFSEDPEVAVMLISLRAGGCGLNL-VAATRVLLMDMWW 485

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +     Q I+R       + G  R V V   + + T++E +LQ    K  +
Sbjct: 486 NPTTEDQAIDR-----THRIGQTRPVHVTRFVVKETVEERILQIQEEKKKL 531


>gi|281209483|gb|EFA83651.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 934

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFN---SDLARLQKA-------FPQGRTLDKDPCTIQE 103
           + I  L   I       ++V  ++    S LARL                 DK    + +
Sbjct: 647 QFIDTLMQQIRNKTKDRVVVISNYTQTLSVLARLCNERGYPFFQLDGSTPSDKRQVLVDK 706

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+   P  +      + G GLNL  G N L+     W+     Q + R+      + G 
Sbjct: 707 FNDPSSPQFVFLLSSKAGGIGLNL-IGANHLILVDPDWNPANDAQAMARVW-----REGQ 760

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K+ V +Y  ++  TI+E + QR  TK  +   ++  
Sbjct: 761 KKVVSIYRTLSTGTIEEKIYQRQITKMALSVSVVEG 796


>gi|295666383|ref|XP_002793742.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226278036|gb|EEH33602.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 1240

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 26/165 (15%)

Query: 52   HDEKIKALEVI-------IEKANAAPI--IVAYHFNSDLARLQ----------KAFPQGR 92
               KI+    I       I   +  P   I+   F S L  L+          + +    
Sbjct: 1058 TSAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSM 1117

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++    + ++ + K   ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 1118 NPNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1175

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V V+ ++ +NT+++ +L     K T+ +  L+
Sbjct: 1176 ----AHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRTLIEGALD 1216


>gi|194761570|ref|XP_001963002.1| GF14153 [Drosophila ananassae]
 gi|190616699|gb|EDV32223.1| GF14153 [Drosophila ananassae]
          Length = 842

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K   L+ ++ K       +++   F   L  +++             G T  K+   
Sbjct: 648 DSGKFGYLDELLPKLREEGHRVLLFSQFTMMLDIVEEYLRVRNHGFCRLDGSTAVKERQD 707

Query: 101 -IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N +  I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 708 LITDFNVDDNIFVFLLSTKAGGVGINLTAADTCIIH-DIDFNPYNDKQAEDRC-----HR 761

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G +R V +Y LI+++TI+E +L     K  ++  + ++ K E 
Sbjct: 762 MGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSSEKGEV 805


>gi|167535979|ref|XP_001749662.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771810|gb|EDQ85471.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1288

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 36/211 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + + +++L  +L      A   A+     L    G                K++ L+ +
Sbjct: 759 LFKEVEQDLKSELLRHEDAATALANLNGLELWRTAG----------------KLELLDHM 802

Query: 63  IEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-- 108
           I K       I++   F + L  L+  F   R             K    + ++N     
Sbjct: 803 IPKLRRFGHRILLFSQFTTMLDILEDYFRYRRLKYCRMDGTCGAAKRAELLHDFNAPDSD 862

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G GLNLQ   + +V F   W+  +  Q        R  + G  + V V+
Sbjct: 863 LEIFILSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAHRIGQTKEVRVF 916

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L+   +++E +L+R R K  +   ++ A K
Sbjct: 917 RLVTVQSVEERMLERAREKLDVDQQVIQAGK 947


>gi|268573820|ref|XP_002641887.1| C. briggsae CBR-ISW-1 protein [Caenorhabditis briggsae]
          Length = 1012

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K           +  N    +D  E  
Sbjct: 366 VKVYVGLSKMQREWYTKILLKDIDVINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 425

Query: 47  HWKEVHDEKIK------ALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFP 89
                    +        L+ ++ +     + +++   F+  L  L+             
Sbjct: 426 PPYTTDQHLVDNCGKMVVLDKLLSRLQEQGSRVLIFSQFSRMLDLLEDYCWWRKYEYCRL 485

Query: 90  QGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T   D    I+ +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 486 DGSTAHVDRTSAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQSDLQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+ LI +NT+D+ ++++   K  + ++++ 
Sbjct: 545 AMDR-----AHRIGQKKQVKVFRLITENTVDDRIIEKAEAKLRLDNIVIQ 589


>gi|268579039|ref|XP_002644502.1| Hypothetical protein CBG14390 [Caenorhabditis briggsae]
 gi|187027870|emb|CAP32941.1| hypothetical protein CBG_14390 [Caenorhabditis briggsae AF16]
          Length = 2938

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 20/161 (12%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCT 100
              K++ L+ I+   +A+   +++ +   + +           +Q     G T  D+    
Sbjct: 1947 SGKLELLDRILPKLQASGHRVLMFFQMTAMMTIVEDYLAGGNIQYLRLDGSTKTDERGAL 2006

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N    +  L      + G GLNLQ   + ++ F   W+  +  Q        R  +
Sbjct: 2007 LDKFNAPNSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHR 2060

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 2061 IGQKAEVRVFRLITANSVEEKILASARFKLNVDEKVIQAGK 2101


>gi|226293312|gb|EEH48732.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1234

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 26/165 (15%)

Query: 52   HDEKIKALEVI-------IEKANAAPI--IVAYHFNSDLARLQ----------KAFPQGR 92
               KI+    I       I   +  P   I+   F S L  L+          + +    
Sbjct: 1052 TSAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSM 1111

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++    + ++ + K   ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 1112 NPNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1169

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V V+ ++ +NT+++ +L     K  + +  L+
Sbjct: 1170 ----AHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRALIEGALD 1210


>gi|225683923|gb|EEH22207.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 1239

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 26/165 (15%)

Query: 52   HDEKIKALEVI-------IEKANAAPI--IVAYHFNSDLARLQ----------KAFPQGR 92
               KI+    I       I   +  P   I+   F S L  L+          + +    
Sbjct: 1057 TSAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSM 1116

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++    + ++ + K   ++     +   GLNL    + ++ F  +W+    +Q I+R 
Sbjct: 1117 NPNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNL-VAASQVIIFDPFWNPYIEEQAIDR- 1174

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V V+ ++ +NT+++ +L     K  + +  L+
Sbjct: 1175 ----AHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRALIEGALD 1215


>gi|261188034|ref|XP_002620434.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis SLH14081]
 gi|239593445|gb|EEQ76026.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1260

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+           +       +     
Sbjct: 770 SGKMQIVKSLLELWRDTGHKTLLFAQHRIMLDILERFIKSLSGFKYQRMDGNTPIKLRQS 829

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 830 MVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERSW-----R 883

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 884 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|171686770|ref|XP_001908326.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943346|emb|CAP68999.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1395

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH----WKEVHD- 53
            + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++        +D 
Sbjct: 818  RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPMSVSNDL 877

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD 97
                  K + L+ I+ K  A    +++ +   + +           +Q     G T  +D
Sbjct: 878  LWRTAGKFELLDRILPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 937

Query: 98   PCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++N    P  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 938  RSDLLRDFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 991

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 992  RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 1036


>gi|39940416|ref|XP_359745.1| hypothetical protein MGG_05032 [Magnaporthe oryzae 70-15]
 gi|145010723|gb|EDJ95379.1| hypothetical protein MGG_05032 [Magnaporthe oryzae 70-15]
          Length = 1166

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
              I+ L  +  +   A ++V   F S L  ++ +  +                    ++E
Sbjct: 1000 ALIQHLRDLRRERPRAKVVVFSQFTSFLTLIEGSLDRANMHHVRLDGTMAQKTRVAVLEE 1059

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    K  +      + G GLNL    + +     WW      Q I+R+      + G  
Sbjct: 1060 FKACSKFTVFLISLRAGGVGLNLTE-ASRVYMCDPWWSFSVESQAIDRV-----HRMGQS 1113

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              V VY  I +N+++E +L+    K  I   L
Sbjct: 1114 EEVKVYRFIVKNSVEERMLKIQDRKKFIATSL 1145


>gi|17508659|ref|NP_492438.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-54) [Caenorhabditis elegans]
 gi|6580237|emb|CAB63308.1| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|6580248|emb|CAA22254.2| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 818

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  RL  +      + +    +  +N+    I        + G GLNL  G N LV F  
Sbjct: 590 DFVRLDGSMS----IKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDP 644

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q + R+      + G K+  F+Y L+A  +I+E + QR   K  +   +++A
Sbjct: 645 DWNPANDDQAMARVW-----RDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDA 699

Query: 198 LKKETIH 204
            +    H
Sbjct: 700 GEDVARH 706


>gi|302698345|ref|XP_003038851.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
 gi|300112548|gb|EFJ03949.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
          Length = 1135

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 52   HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKD 97
               K+KAL      + ++      +V   F S +  +          Q  F     + K 
Sbjct: 958  TSTKLKALMDNLLRLKKEDPGFRAVVFSQFTSFMDLIEITLKREGFDQYRFDGSMDVKKR 1017

Query: 98   PCTIQEWNEG-KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I E+      P ++     + G GLNL    N +     WW+     Q I+R+    
Sbjct: 1018 NHAISEFKAPSDAPKIMVVSLKAGGVGLNLTN-ANYVFMMDCWWNAATENQAIDRV---- 1072

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G ++ VFV + I  +TI+  +LQ  + K+ I         ++
Sbjct: 1073 -HRLGQEKPVFVKHFIISDTIEGRILQIQKRKTAIVKEAFRGTARD 1117


>gi|239615027|gb|EEQ92014.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis ER-3]
 gi|327349863|gb|EGE78720.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1260

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+           +       +     
Sbjct: 770 SGKMQIVKSLLELWRDTGHKTLLFAQHRIMLDILERFIKSLSGFKYQRMDGNTPIKLRQS 829

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 830 MVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERSW-----R 883

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 884 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|194756516|ref|XP_001960523.1| GF13400 [Drosophila ananassae]
 gi|190621821|gb|EDV37345.1| GF13400 [Drosophila ananassae]
          Length = 1027

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K     + +++       L  L+              G+T  +D
Sbjct: 426 LIYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRGYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEYNMDNSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|15226870|ref|NP_178318.1| ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|4038042|gb|AAC97224.1| putative helicase [Arabidopsis thaliana]
 gi|16648975|gb|AAL24339.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana]
 gi|27311941|gb|AAO00936.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana]
 gi|330250451|gb|AEC05545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
             +   K + L  ++         +++   + S L  L+              G T   D
Sbjct: 583 HVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTD 642

Query: 98  PCTIQE-WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             TI + +N  K I        + G GLNL  G + ++   + ++ +  +Q  +R     
Sbjct: 643 RQTIVDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQIDRQAEDRC---- 697

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 698 -HRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 738


>gi|317030518|ref|XP_001392709.2| SNF2 family helicase/ATPase PasG [Aspergillus niger CBS 513.88]
          Length = 892

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGR 92
                    K+  L+ ++         I++   F + L  LQ                  
Sbjct: 642 DETLVTASGKMLLLDRLVPCLLNKGHKILIFSQFKTQLDILQDWATQLRSWNCCRIDGAV 701

Query: 93  TLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + +     I+ +N  K   L      + G G+NL    + ++ F   W+ ++  Q     
Sbjct: 702 SQEDRRAQIKAFNTDKNYKLFLLSTRAGGQGINL-MAADTVILFDSDWNPQQDLQA---- 756

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 757 -QDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 807


>gi|307206264|gb|EFN84329.1| Helicase domino [Harpegnathos saltator]
          Length = 4084

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+++L+ ++ K  ++   +++       L  L+                  +D+    ++
Sbjct: 1703 KLQSLDRLLRKLKSDNHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTRVDQRQVLME 1762

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1763 RFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1816

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1817 TRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1852


>gi|323456317|gb|EGB12184.1| hypothetical protein AURANDRAFT_19973 [Aureococcus anophagefferens]
          Length = 216

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 21/141 (14%)

Query: 65  KANAAPIIVAYHFNSDLA---------------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           +A    ++V       L                RL +      T+      I++++    
Sbjct: 82  RARGEKVLVFSQSLRSLDYLQISVVSGDLGWPARLARRLDGDTTVTARQALIEDFSSSDA 141

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            + F    + G G+NL +    ++ F + W+  +  Q I R       + G +R VFVY 
Sbjct: 142 VVFFLSVRAAGVGINL-HAATRVILFDVSWNPADDAQAIAR-----AHRFGQERPVFVYR 195

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+A  T++E V  R   K  +
Sbjct: 196 LVAAGTVEERVFNRQIAKGAV 216


>gi|71649758|ref|XP_813592.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70878490|gb|EAN91741.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 929

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
           L   + G  + A   A    +    A+  +  DE          K+  L+ ++ +  AN 
Sbjct: 483 LALRILGVEVRASAQAGWEERL---ASAGIELDEASIIA--PSAKMIELDRMLREFKANG 537

Query: 69  APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHP 116
              ++  +F S L  LQ          +         +   ++  +N       +     
Sbjct: 538 HRCLIFSNFTSILDLLQALCVLRGYGFERIDGSTPRVERELSMIRFNAPGSACFVFLLTT 597

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+ L  G + ++ F        +   I+R    R  + G  R V V+ L  +NTI
Sbjct: 598 TAGGVGVTLT-GADTVILFD-----AHYNPQIDRQAADRAHRIGQTRVVRVHRLCLKNTI 651

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +      K+++ D +++ 
Sbjct: 652 EERIHDVALRKASLGDFIVDG 672


>gi|145512399|ref|XP_001442116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409388|emb|CAK74719.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1659

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 37/205 (18%)

Query: 22   AFNSASKTV---KCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA----------- 66
            A N+AS      +  +  N   +  + +    +    KI  +  ++E +           
Sbjct: 825  AANAASLNNLEIQLRKCCNHPFLIQEMQNDLSKGCQTKIDYINKLVESSGKMILLDKLLN 884

Query: 67   ----NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--KIP 110
                    +++   F   L+ L++     +             +    I  +N+   K  
Sbjct: 885  KFRSEGKKMLIFSQFTMMLSILEEYLKFKQVKYEKIDGQIKARERSNAIDRFNDPSKKRE 944

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL     I+V +   W+ +   Q   R       + G  + V VY L
Sbjct: 945  VFLLSTKAGGQGINLT-AAEIVVIYDSDWNPQNDVQATAR-----AHRIGQSKEVTVYRL 998

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I ++T +  + +R   K  +   + 
Sbjct: 999  ITKDTYEAEMFERAIKKLGLDQAIF 1023


>gi|302697641|ref|XP_003038499.1| hypothetical protein SCHCODRAFT_72893 [Schizophyllum commune H4-8]
 gi|300112196|gb|EFJ03597.1| hypothetical protein SCHCODRAFT_72893 [Schizophyllum commune H4-8]
          Length = 1076

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--EEKHWKEVH 52
             QR+ Y  +  ++I+A N  +             +QL         +D  E        
Sbjct: 422 DMQRKWYRSVLEKDIDAVNGLTGKKEGKTRLMNMVMQLRKVTCHPYLFDGAEPGPPYTTD 481

Query: 53  DE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
           +       K+  L+ +++      + +++    +  L  L+               G   
Sbjct: 482 EHLVENCGKMLILDKLLKSMKEKGSRVLIFSQMSRMLDILEDYCLFRGYKYCRIDGGTAH 541

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R  
Sbjct: 542 DDRITAIDEYNKPDSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR-- 598

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G  + V+V+  I + +++E +L+R   K  +  L++   +++
Sbjct: 599 ---AHRIGQTKQVYVFRFITEGSVEERMLERAAQKLRLDQLVIQQGRQQ 644


>gi|210075955|ref|XP_504989.2| YALI0F04356p [Yarrowia lipolytica]
 gi|199424920|emb|CAG77796.2| YALI0F04356p [Yarrowia lipolytica]
          Length = 1242

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 82/213 (38%), Gaps = 26/213 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDEKIK 57
             +   ++   L     +  +++       ++AN            +           K++
Sbjct: 955  EELAPDITEFLSTIAFDKISTSQTLANLRKVANSPYLVKFPWGEEEPVDERIISDSGKMR 1014

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
              + +  +  +    ++V   F+  L  L +                 L++    I  +N
Sbjct: 1015 VFDQLAMELVSRKHKMLVFSQFSGTLDLLTEWCEFRHLPYCMLIGSMGLEERQEMIDAFN 1074

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E   P +      + G G+NL    ++++ F   W+ ++ +Q I+R       + G K+ 
Sbjct: 1075 EESGPSIFLITTRAGGTGINLTAADSVVI-FDSDWNPQQDKQAIDR-----SHRIGQKKP 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +Y LI+ NT++E++++    K  + ++++ A
Sbjct: 1129 CVIYRLISTNTMEEMLVRVASDKKRLDEMVIQA 1161


>gi|212546089|ref|XP_002153198.1| SNF2 family helicase/ATPase (Swr1), putative [Penicillium marneffei
            ATCC 18224]
 gi|210064718|gb|EEA18813.1| SNF2 family helicase/ATPase (Swr1), putative [Penicillium marneffei
            ATCC 18224]
          Length = 1644

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1326 PDKRLLQYDCGKLQQLDKLLRELQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1385

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1386 TKVEQRQMLTDRFNNDNRILAFILSTRSGGLGINLT-GADCVIFYDLDWNPAMDKQCQDR 1444

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1445 C-----HRIGQTRDVHIYRFVSEFTIESNILRKANQKRMLDDVVIQ 1485


>gi|295662396|ref|XP_002791752.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb01]
 gi|226279878|gb|EEH35444.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb01]
          Length = 1234

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L+           +       +     
Sbjct: 765 SGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQS 824

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N   +I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 825 LVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 878

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETIHV 205
            G KR V +Y L+   TI+E +  R   K  + + +L +  +++T H+
Sbjct: 879 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQRQTFHM 926


>gi|195387524|ref|XP_002052444.1| GJ21604 [Drosophila virilis]
 gi|194148901|gb|EDW64599.1| GJ21604 [Drosophila virilis]
          Length = 842

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 65  KANAAPIIVAYHFNSDLA------RLQKA----FPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           KA    +++   F   L       R++K           + +    I ++N +  I +  
Sbjct: 663 KAEGHRVLLFSQFTMMLDVVEEYLRIRKHGFCRLDGATAVKERQDLITDFNVDDNIFVFL 722

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL      ++   + ++    +Q  +R       + G  R V +Y LI++
Sbjct: 723 LSTKAGGVGINLTAADTCIIH-DIDFNPYNDKQAEDRC-----HRMGQSRPVTIYRLISE 776

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +TI+E +L     K  ++  + +  K E 
Sbjct: 777 STIEEGILMAAEEKLKLEKDITSTEKGEV 805


>gi|125538184|gb|EAY84579.1| hypothetical protein OsI_05951 [Oryza sativa Indica Group]
          Length = 936

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 92/258 (35%), Gaps = 67/258 (25%)

Query: 1   MKQYHKF-----QRELYCDLQGENIEAFNSASKTVK--------CLQLANGAVYYDEEKH 47
           +K Y KF     ++E+   ++   ++   S  K  +         L+L +  +    E  
Sbjct: 604 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 663

Query: 48  WKEV-------------------HDEKIKALEVIIEK---------------ANAAPIIV 73
              +                   H  K+ AL+ I+++                    +++
Sbjct: 664 PDYLVDLLKEIGMGTGDELHDLHHSPKLVALQEILQECGIGSEISSPDASAAIGQHRVLI 723

Query: 74  AYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
                + L  ++K                     +K    ++ +N +  I +L       
Sbjct: 724 FAQHKALLDIIEKDLFQSHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVG 783

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + LVF    W+  +  Q ++R       + G ++ V V+ LI + T++E 
Sbjct: 784 GLGLNLT-SADTLVFMEHDWNPMKDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEK 837

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V+   R K ++ + ++NA
Sbjct: 838 VMSLQRFKVSVANAVINA 855


>gi|189230031|ref|NP_001121509.1| RAD54 homolog B [Xenopus (Silurana) tropicalis]
 gi|183986491|gb|AAI66345.1| rad54b protein [Xenopus (Silurana) tropicalis]
          Length = 897

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 22/173 (12%)

Query: 44  EEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFP 89
           +     E    K+  L  ++    E + +  +++  ++   L  LQ              
Sbjct: 614 DGAKISESESGKLLVLSNLLSRIRELSPSERVVLVSNYTQTLNILQDLCNQHGYSCTRLD 673

Query: 90  QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               + +    +  +N       +      + G GLNL  G + L+ + L W+     Q 
Sbjct: 674 GQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGLNL-IGASHLILYDLDWNPANDIQA 732

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R+      + G +  V +Y L+   +++E + QR  +K  +   +++  KK
Sbjct: 733 MARVW-----RDGQRHTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVVDLTKK 780


>gi|124802575|ref|XP_001347516.1| Chromodomain-helicase-DNA-binding protein 1 homolog, putative
            [Plasmodium falciparum 3D7]
 gi|23495097|gb|AAN35429.1| Chromodomain-helicase-DNA-binding protein 1 homolog, putative
            [Plasmodium falciparum 3D7]
          Length = 3328

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------- 85
            L    +  DE K        KI  LE ++ +       +++       L  L        
Sbjct: 1594 LCAEPLDKDEYKERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRG 1653

Query: 86   ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      T +     +  +N       +      + G G+NL    + ++ +   W+
Sbjct: 1654 FKHQRLDGTMTKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLT-SADTVIIYDSDWN 1712

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   Q   R       + G  + V +Y L+ +++I++ +L+R + K  +  L++  L K
Sbjct: 1713 PQNDLQAGAR-----AHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNK 1767

Query: 201  E 201
            +
Sbjct: 1768 K 1768


>gi|68485787|ref|XP_713174.1| hypothetical protein CaO19.9427 [Candida albicans SC5314]
 gi|46434654|gb|EAK94057.1| hypothetical protein CaO19.9427 [Candida albicans SC5314]
          Length = 1641

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++++  +     ++       L  L++             G 
Sbjct: 1356 PDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1415

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1416 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1474

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1475 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1515


>gi|324499672|gb|ADY39866.1| Helicase ssl-1 [Ascaris suum]
          Length = 2173

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L  ++          ++    +  L  LQ                  +++    ++
Sbjct: 1396 KLQVLSSLLRDLFLYKHRCLIFTQMSRMLDVLQAFLSFHGYQYFRLDGTTGIEQRQAMME 1455

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1456 RFNSDPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1509

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1510 TRNVTIYRLISERTIEENILKKAMQKRRLGELAID 1544


>gi|324499612|gb|ADY39837.1| Helicase ssl-1 [Ascaris suum]
          Length = 2737

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L  ++          ++    +  L  LQ                  +++    ++
Sbjct: 1396 KLQVLSSLLRDLFLYKHRCLIFTQMSRMLDVLQAFLSFHGYQYFRLDGTTGIEQRQAMME 1455

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1456 RFNSDPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1509

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1510 TRNVTIYRLISERTIEENILKKAMQKRRLGELAID 1544


>gi|313885386|ref|ZP_07819136.1| helicase C-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619116|gb|EFR30555.1| helicase C-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 393

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 32/199 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   +++   D +  +    N +S      + AN               ++K+K LE+
Sbjct: 208 KEYKVIEKDRVLDDKAYD----NPSSLLHGLREHAN--------------RNDKLKYLEM 249

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTI---QEWNEGKIPLLFAH 115
           + E      I++ Y + S+L  +++   +G+ +   +     I    +W++    L    
Sbjct: 250 LFE-GTDNNIVIFYQYTSELEAIKE-IAKGKIIFEVNGSKQAIPSKDKWDKVSNSLTLVQ 307

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+ LQY  NI+V+++  +  +++ Q + R       + G KR V V+    + T
Sbjct: 308 YQAGAAGIELQY-ANIVVYYTPTYSYQDYAQSLGR-----THRNGQKRKVTVFRFNTEKT 361

Query: 176 IDELVLQRLRTKSTIQDLL 194
           I++ V   L  K      L
Sbjct: 362 IEQAVWSALEKKKDFDKTL 380


>gi|321458928|gb|EFX69988.1| hypothetical protein DAPPUDRAFT_202549 [Daphnia pulex]
          Length = 621

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------P 89
           Y  +E   K     K+  ++ ++ +   +   +++       L  L              
Sbjct: 371 YVVDESMVK--DSGKLTVMDQMLTRLIKDGHKVLIFSTLTMLLDVLADYLSMRDMKFCRL 428

Query: 90  QGR-TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            GR  L+     +  + N+    +      + G G+ L    + ++ +   W+ +   Q 
Sbjct: 429 DGRMNLEDRATDMDTFRNDPDTSVFLISTRAGGLGITLT-SADTVIIYDSDWNPQCDLQA 487

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +R       + G  + V VY L+A +T+D+ +++R   K  ++ L++   K
Sbjct: 488 QDRC-----HRIGQTKPVVVYRLVAADTVDQRIIERAGAKRKLEKLVIQKGK 534


>gi|240278991|gb|EER42497.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H143]
 gi|325090250|gb|EGC43560.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H88]
          Length = 974

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +H       KI+ L+ +   I    +  +++  ++ S L  L                  
Sbjct: 644 RHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGST 703

Query: 93  TLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    + ++N      +        + G GLNL  G + L+ F + W+     Q + 
Sbjct: 704 PPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAMA 762

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G KR   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 763 RI-----HRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 804


>gi|225560239|gb|EEH08521.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 974

 Score = 98.9 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +H       KI+ L+ +   I    +  +++  ++ S L  L                  
Sbjct: 644 RHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGST 703

Query: 93  TLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    + ++N      +        + G GLNL  G + L+ F + W+     Q + 
Sbjct: 704 PPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAMA 762

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G KR   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 763 RI-----HRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 804


>gi|238883647|gb|EEQ47285.1| helicase SWR1 [Candida albicans WO-1]
          Length = 1641

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++++  +     ++       L  L++             G 
Sbjct: 1356 PDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1415

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1416 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1474

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1475 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1515


>gi|195430100|ref|XP_002063095.1| GK21565 [Drosophila willistoni]
 gi|194159180|gb|EDW74081.1| GK21565 [Drosophila willistoni]
          Length = 1026

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR+ Y  +  ++I+  N A K  K       +QL    N    +D             
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
              +  K+  L+ ++ K       +++       L  L+              G+T  +D
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 98  P-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 486 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 541 -AHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|320581785|gb|EFW96004.1| global transcription activator Snf2p [Pichia angusta DL-1]
          Length = 1461

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD 53
            K YH+  +     +   + +A         K +QL    N         D      E +D
Sbjct: 855  KLYHQMLKYNQLFIGDSDSKAPVGIKGMNNKLMQLRKICNHPYVFPAIEDMINPSHENND 914

Query: 54   E------KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
                   K + L+ I+   +A+   +++ +     +  ++                   D
Sbjct: 915  TIWRVSGKFELLDRILPKFRASGHRVLMFFQMTQIMDIMEDFLRFRGMHYMRLDGDTRAD 974

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++++N    P  +      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 975  DRTALLKDFNSEDSPYFVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 1028

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++I+E +L+R   K  I   ++ A K
Sbjct: 1029 DRAHRIGQKNEVRILRLITSDSIEEYILERAHQKLDIDGKVIQAGK 1074


>gi|237725527|ref|ZP_04556008.1| SNF2 family helicase [Bacteroides sp. D4]
 gi|229436214|gb|EEO46291.1| SNF2 family helicase [Bacteroides dorei 5_1_36/D4]
          Length = 632

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGR 92
           D+       +    + +E II +     +IV   +       ++  P           G 
Sbjct: 450 DDPSVVSVKYQRFCEIVEEIISR--KEKVIVFTSYKRMFEIFEEDIPVRFGIKIWSINGE 507

Query: 93  T-LDKDPCTIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T ++   C + ++N    P +   +P + G GLN+  G N ++ ++L W+     Q   R
Sbjct: 508 TPIEDRQCIVDKFNHLDEPAMLVLNPRAAGTGLNIT-GANHIIHYNLEWNPSLEDQSSAR 566

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G ++ VFVY L   +T++E+V +R+  K  I    +
Sbjct: 567 -----AYRRGQEKTVFVYRLYYTDTVEEVVNERIERKRDIASYAI 606


>gi|62948072|gb|AAH94345.1| Btaf1 protein [Mus musculus]
          Length = 990

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69  APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 786 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 842

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 843 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 896

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 897 TRGTLEEKIMGLQKFKMNIANTVIS 921


>gi|325117906|emb|CBZ53457.1| hypothetical protein NCLIV_032440 [Neospora caninum Liverpool]
          Length = 713

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 19/149 (12%)

Query: 61  VIIEKANAAPIIVAYHFNSDLA---RLQK------AFPQGRT-LDKDPCTIQEWNEGKIP 110
            +I       I++  ++   L    R+ +          G+T + K    I ++N+   P
Sbjct: 366 DVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRLDGQTSIKKRHAMITKFNDPMNP 425

Query: 111 ---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    +Q + R+      + G K+  ++
Sbjct: 426 QSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQKKPCYI 479

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y   +  TI+E + QR   K  +  +L++
Sbjct: 480 YRFFSTGTIEEKIYQRQICKDGLSAMLVS 508


>gi|242824408|ref|XP_002488252.1| SNF2 family helicase/ATPase (Swr1), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218713173|gb|EED12598.1| SNF2 family helicase/ATPase (Swr1), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1663

 Score = 98.5 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++ +  A     ++       L  L++             G 
Sbjct: 1342 PDKRLLQYDCGKLQQLDKLLRELQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGT 1401

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1402 TKVEQRQMLTDRFNNDNRILAFILSTRSGGLGINLT-GADSVIFYDLDWNPAMDKQCQDR 1460

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1461 C-----HRIGQTRDVHIYRFVSEFTIESNILRKANQKRMLDDVVIQ 1501


>gi|68485880|ref|XP_713128.1| hypothetical protein CaO19.1871 [Candida albicans SC5314]
 gi|74679737|sp|Q59U81|SWR1_CANAL RecName: Full=Helicase SWR1
 gi|46434607|gb|EAK94011.1| hypothetical protein CaO19.1871 [Candida albicans SC5314]
          Length = 1641

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++++  +     ++       L  L++             G 
Sbjct: 1356 PDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1415

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1416 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1474

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1475 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1515


>gi|116214441|ref|XP_001230237.1| hypothetical protein CHGG_11061 [Chaetomium globosum CBS 148.51]
 gi|88175416|gb|EAQ82885.1| hypothetical protein CHGG_11061 [Chaetomium globosum CBS 148.51]
          Length = 2030

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1400 PDKRLLQYDCGKLQTLDKLLRRLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1459

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1460 TKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1518

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1519 C-----HRIGQTRDVHIYRLVSEHTIEANILRKAGQKQMLDDVVIQ 1559


>gi|189191134|ref|XP_001931906.1| chromodomain-helicase-DNA-binding protein 4 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973512|gb|EDU41011.1| chromodomain-helicase-DNA-binding protein 4 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1735

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 34/214 (15%)

Query: 16   QGENIEAFNSASKTVKCLQL----ANGAVYYDEEKHWKEVH----------DEKIKALEV 61
              + ++    A+ +   +QL     +  VY  E +   +V             K+  LE+
Sbjct: 989  SDKQLKQQERANLSNILMQLRKCLCHPFVYSREIEERSDVAAVSHRNLVEASAKLSLLEM 1048

Query: 62   IIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI 109
            ++ K +     +++   F   L  ++      +   +              I ++N    
Sbjct: 1049 LLPKLHERGHRVLIFSQFLDMLNIIEDFLDGMQLPYQRLDGTMGSLEKQKRIDQFNAPDS 1108

Query: 110  PLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            PL        + G G+NL    + ++     W+  +  Q I R       + G K  V  
Sbjct: 1109 PLFAFLLSTRAGGVGINL-ATADTVIILDPDWNPHQDLQAIAR-----AHRIGQKNKVLC 1162

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              L  + +++E ++Q  + K  +  +++  L +E
Sbjct: 1163 LQLATRASVEEKIMQMGKKKMALDKVVVQDLDRE 1196


>gi|46122747|ref|XP_385927.1| hypothetical protein FG05751.1 [Gibberella zeae PH-1]
 gi|84029506|sp|Q4IAK7|SWR1_GIBZE RecName: Full=Helicase SWR1
          Length = 1691

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1361 PDKRLLQYDCGKLQILDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1420

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1421 TKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1479

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1480 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1520


>gi|300122947|emb|CBK23954.2| unnamed protein product [Blastocystis hominis]
          Length = 787

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
               +++     S L  + K                 + K    +  +N +  I L    
Sbjct: 578 EGHKVLIYTQTVSMLTIIMKYVEEQHFSYCMMDGSTPVVKRQALVDLFNSDPTIFLFLLT 637

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G + ++ F   W+     Q  ER       + G +R V +Y LI   T
Sbjct: 638 TRVGGLGINL-VGADRVILFDPDWNPSVDIQARERCW-----RIGQQRPVTIYRLITSGT 691

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E +  R   K+ + + +L
Sbjct: 692 IEEKIYHRQIFKTVLSNRVL 711


>gi|293331535|ref|NP_001169906.1| hypothetical protein LOC100383801 [Zea mays]
 gi|224032283|gb|ACN35217.1| unknown [Zea mays]
          Length = 466

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTL----- 94
            D + +WK     K+K L  ++E         IV   F S    L+  F Q         
Sbjct: 290 VDAKNNWK--DSCKVKTLVTMLESLQRKQEKSIVFSQFTSFFDLLEIRFTQKGIKFLRFD 347

Query: 95  -----DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      ++E++E     +L     + G GLNL    N+ +    WW+    +Q I
Sbjct: 348 GKLSQKHKEKVLKEFSESQDKLVLMMSLKAGGVGLNLTAASNVFMM-DPWWNPAVEEQAI 406

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G KR V V   I + T++E + Q    K 
Sbjct: 407 MRI-----HRIGQKREVRVKRFIVKGTVEERMQQVQMRKQ 441


>gi|224052438|ref|XP_002197654.1| PREDICTED: helicase, lymphoid-specific [Taeniopygia guttata]
          Length = 824

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDPC 99
           +  K   L+ ++ +       +++       L  L      + F   R        +   
Sbjct: 582 NSGKFLLLDRMLPELKKRGHKVLLFSQMTMMLDILMDYCYLRNFKFSRLDGSMSYSEREE 641

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N + ++ L      + G G+NL    + ++ +   W+ +   Q  +R       +
Sbjct: 642 NMHQFNTDPEVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HR 695

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 696 IGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 732


>gi|34559250|gb|AAQ75381.1| global transcription activator Snf2p [Pichia angusta]
          Length = 1461

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD 53
            K YH+  +     +   + +A         K +QL    N         D      E +D
Sbjct: 855  KLYHQMLKYNQLFIGDSDSKAPVGIKGMNNKLMQLRKICNHPYVFPAIEDMINPSHENND 914

Query: 54   E------KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
                   K + L+ I+   +A+   +++ +     +  ++                   D
Sbjct: 915  TIWRVSGKFELLDRILPKFRASGHRVLMFFQMTQIMDIMEDFLRFRGMHYMRLDGDTRAD 974

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++++N    P  +      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 975  DRTALLKDFNSEDSPYFVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 1028

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++I+E +L+R   K  I   ++ A K
Sbjct: 1029 DRAHRIGQKNEVRILRLITSDSIEEYILERAHQKLDIDGKVIQAGK 1074


>gi|328869586|gb|EGG17963.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1429

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 32/182 (17%)

Query: 35   LANGAVYYDEEKHWKEVHDEKI-KALEVIIEK---ANAAPIIVAYHFNSDLARLQK---- 86
            +A G+ + D++      +  K+ + L+ I E       A I++   + S L R++     
Sbjct: 1193 IAAGSEFIDDK------NSAKLTRMLDDINEAKRNDRDAKIVIFSQWTSMLNRVEMLLIE 1246

Query: 87   ----------AFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                       +    T +     ++ +    G+  +L     + G GLNL    +++V 
Sbjct: 1247 KNIMPTEHYLRYDGTMTPNAKRAAVETFQTTNGEPRILLISLKAGGVGLNLTRANHVIVL 1306

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW+     Q I+R+      + G  + V+V   + Q +I+E VL+  R K ++   +
Sbjct: 1307 -DPWWNSSAEDQAIDRV-----HRIGQLKHVYVKKYVIQASIEERVLELQRAKESMTKAI 1360

Query: 195  LN 196
            L+
Sbjct: 1361 LD 1362


>gi|330800380|ref|XP_003288215.1| hypothetical protein DICPUDRAFT_152429 [Dictyostelium purpureum]
 gi|325081785|gb|EGC35289.1| hypothetical protein DICPUDRAFT_152429 [Dictyostelium purpureum]
          Length = 1956

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-E 106
             I    N   +++       L  ++                       K    + ++N +
Sbjct: 1722 EISATTNQHRVLIFAQMKQMLDIVENELFKKHLPSITYLRMDGSTESMKRHTIVNQFNSD 1781

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +L       G GLNL  G + ++F    W+  +  Q ++R       + G K+ V 
Sbjct: 1782 PTIDVLLLTTHVGGLGLNLT-GADTVIFLEHDWNPMKDLQAMDR-----AHRIGQKKVVN 1835

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY LI   T++E ++   + K  I + ++N
Sbjct: 1836 VYRLITTGTLEEKIMGLQKFKLNIANTVIN 1865


>gi|224046507|ref|XP_002200063.1| PREDICTED: RAD54 homolog B [Taeniopygia guttata]
          Length = 919

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 23/172 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           E    K++ L  ++   +       +++  ++   L  LQ                  + 
Sbjct: 644 ETDSGKLQVLVKLLAAIHELNSSERVVLVSNYTQTLNVLQDVCKHYGYSYTRLDGHTPVS 703

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N    P  +      + G GLNL  G + L+ + + W+     Q + R+  
Sbjct: 704 QRQHIVDTFNSKFSPAFIFLLSSKAGGVGLNL-VGASHLILYDIDWNPATDIQAMARVW- 761

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK-KETIH 204
               + G K +V +Y L+   +I+E + QR  +K  +   +++  K  E  H
Sbjct: 762 ----RDGQKHSVHIYRLLTTGSIEEKIYQRQISKQDLSGAVVDLSKTSEHTH 809


>gi|28317220|gb|AAO39617.1| GH12153p [Drosophila melanogaster]
          Length = 1221

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 972  SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1026

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 1027 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1085

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1086 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1140

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1141 TANTVVSA 1148


>gi|168705379|ref|ZP_02737656.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 612

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 23/205 (11%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y + + +    L   G+ I   +     ++  Q+ N      E     ++    +  +
Sbjct: 389 AAYVRAENDGVIQLNALGDTITVQHVFQLVMRLKQICNFDPLTGESAKLVQL----LSDM 444

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------KDPCTIQEWNEGKIP 110
           E + E       I+   +   L  L KA  +   L          + P   +  ++    
Sbjct: 445 EEVAES--GRKAIIFSQWVEPLEVLAKALAKYGPLQYHGKIPQPQRTPILDRFKSDPSAH 502

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNLQ+  N +  F  WW+     Q I R       + G K  V V   
Sbjct: 503 VLLMSYGTGSVGLNLQF-TNYVFLFDRWWNPAIEDQAINR-----AHRLGQKHPVTVTRF 556

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           ++  TI+  +   L  K  + + L+
Sbjct: 557 LSGGTIEGRIADILDAKRKVFNDLI 581


>gi|91088413|ref|XP_966659.1| PREDICTED: similar to TATA-binding protein-associated factor 172
            [Tribolium castaneum]
 gi|270011757|gb|EFA08205.1| hypothetical protein TcasGA2_TC005832 [Tribolium castaneum]
          Length = 1810

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 34/186 (18%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEK--------------ANAAPIIVAYHFNSDLARL- 84
            +   + K     H  K+ AL+ +++                N    +V     + L  + 
Sbjct: 1564 LQTQDSKLDDISHSAKLPALKQLLQDCGIGVTEPQSTELVVNQHRALVFCQLKAMLDIIE 1623

Query: 85   ----QKAFPQGRTL---------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                +K  P    L          +     +  N+  I +L       G GLNL  G + 
Sbjct: 1624 KDLFKKHMPGVTYLRLDGSIPPSQRHSVVTRFNNDPSIDVLLLTTQVGGLGLNLT-GADT 1682

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+  +  Q ++R       + G ++ V VY LI + T++E ++   + K    
Sbjct: 1683 VIFVEHDWNPMKDLQAMDR-----AHRIGQRKVVNVYRLITRATLEEKIMGLQKFKVQTV 1737

Query: 192  DLLLNA 197
            + +++ 
Sbjct: 1738 NTIISG 1743


>gi|299741616|ref|XP_001831930.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
 gi|298404796|gb|EAU89829.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
          Length = 1102

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---AN----------GAVYYDE 44
           + QR+ Y  +  ++I+A N  +             +QL               G  Y  +
Sbjct: 384 EMQRKWYRSVLEKDIDAVNGLTGKKEGKTRLMNIVMQLRKVTCHPYLFDGAEPGPPYTTD 443

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E   +  +  K+  L+ +++      + +++    +  L  L+               G 
Sbjct: 444 EHLIQ--NSGKMVILDKLLKMMYQKGSRVLIFSQMSRVLDILEDYCLFRGYKYCRIDGGT 501

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 502 AHEDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 560

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+VY  I + +++E +L+R   K  +  L++   + +
Sbjct: 561 -----AHRIGQTKQVYVYRFITEGSVEERMLERAAQKLRLDQLVIQQGRAQ 606


>gi|224116170|ref|XP_002317230.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222860295|gb|EEE97842.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 800

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGR 92
           N A Y         V D   K    I  KA     IV   +   L  L+        Q R
Sbjct: 616 NVACYDTSSGSRDSVKDGMDKRCLPI--KAVGEKAIVFSQWTGMLDLLEACLKNSSIQYR 673

Query: 93  TLDKD------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            LD           ++++N   ++ ++     +   GLN+    ++L+   LWW+     
Sbjct: 674 RLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL-DLWWNPTTED 732

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q I+R       + G  RAV V  L  +NT+++ +L   + K  +
Sbjct: 733 QAIDR-----AHRIGQTRAVTVLRLTVKNTVEDRILALQQKKREM 772


>gi|68477713|ref|XP_717169.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
 gi|68477876|ref|XP_717090.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
 gi|46438788|gb|EAK98114.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
 gi|46438870|gb|EAK98195.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
          Length = 796

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKAL-EVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
           EEK    +   KI  L  +++E  +    I++  ++   L  L++   +           
Sbjct: 507 EEKFNLGMASGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGS 566

Query: 95  ---DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     + ++N    I +      S G G+NL  G + L+ F   W+     Q + R
Sbjct: 567 TPNNVRSKLVNQFNTNPDINVFLLSSKSGGMGINL-VGASRLILFDNDWNPATDLQSMSR 625

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I      + G  +  F+Y L     IDE + QR   K+ +    L+
Sbjct: 626 I-----HRDGQLKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFLD 666


>gi|327539289|gb|EGF25911.1| Non-specific serine/threonine protein kinase [Rhodopirellula
           baltica WH47]
          Length = 647

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 27/207 (13%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +Y   ++E    L+   E++   +     ++  Q+ N                 K++ L
Sbjct: 408 ARYETAEKEGVVHLEELEESLTVQHVFELVLRLKQICNF--------DPVTNSSAKLQRL 459

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEW-NEGK 108
           E  +E+  A+    I+   +   + +++    +   L         K    I+++ N+  
Sbjct: 460 EADMEEVAASGQKAILFSQWTKTIDKMRPTLERFGPLEYHGKIPHKKREGVIEQFKNDPN 519

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++     +   GLNLQ+    +  F  WW+     Q I R       + G   +V V 
Sbjct: 520 SHIILMSYGAGSVGLNLQF-CRYVFLFDRWWNPAIEDQAINR-----AHRIGAAGSVTVS 573

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++A NTI++ +   L  K  + D+L 
Sbjct: 574 RMMAVNTIEQRIAAVLDQKREMFDMLF 600


>gi|320587503|gb|EFW99983.1| helicase swr1 [Grosmannia clavigera kw1407]
          Length = 1751

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             +K   +    K++AL+ ++   +A     ++       L  L++               
Sbjct: 1406 PDKRLLQYDCGKLQALDRLLRRLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1465

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++       +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1466 TKIEQRQILTDRFNHDSRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1524

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1525 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1565


>gi|255724726|ref|XP_002547292.1| TATA-binding protein associated factor MOT1 [Candida tropicalis
           MYA-3404]
 gi|240135183|gb|EER34737.1| TATA-binding protein associated factor MOT1 [Candida tropicalis
           MYA-3404]
          Length = 648

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 24/169 (14%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFP------- 89
            D  K  K+ + + I A E +I +      ++       L       L+K  P       
Sbjct: 393 SDYNKSTKKKNQQLISA-EGVISQ---HRALIFCQLKDMLDMVENDLLRKYLPSVTFMRL 448

Query: 90  QGRTLDKDPCTI-QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G T  +D  +I +++NE   I +L       G GLNL  G + ++F    W+     Q 
Sbjct: 449 DGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQA 507

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++R       + G K+ V VY LI ++T++E ++   + K  I   ++N
Sbjct: 508 MDR-----AHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMNIASTIVN 551


>gi|255071433|ref|XP_002499390.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226514653|gb|ACO60649.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 865

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 27/163 (16%)

Query: 52  HDEKIKAL-----EVIIEKANA---APIIVAYHFNSDLARLQKAFPQGRTL--------- 94
              K +AL       +  + +    A  +V   F + +   QK+                
Sbjct: 681 PSAKTEALVARLKTDLRARGDGGRKAKAVVFSQFVTFIDIAQKSVEAAGFKCVRLTGGVS 740

Query: 95  -DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  I+E+         ++F    + G G+NL    + +     WW+     Q ++R
Sbjct: 741 AAGREKCIREFQSPDADSPDVIFVSLKAGGVGINLT-AASFVYMLDPWWNPATEDQAMDR 799

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +      + G  R V V   + +++IDE +++  + K  +   
Sbjct: 800 V-----HRLGQDRPVKVVRFVCKDSIDEKMMELQQRKRELAKA 837


>gi|32477129|ref|NP_870123.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
 gi|32447677|emb|CAD79278.1| swi/snf family helicase_2 [Rhodopirellula baltica SH 1]
          Length = 647

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 27/207 (13%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +Y   ++E    L+   E++   +     ++  Q+ N                 K++ L
Sbjct: 408 ARYETAEKEGVVHLEELEESLTVQHVFELVLRLKQICNF--------DPVTNSSAKLQRL 459

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEW-NEGK 108
           E  +E+  A+    I+   +   + +++    +   L         K    I+++ N+  
Sbjct: 460 EADMEEVAASGQKAILFSQWTKTIDKMRPTLERFGPLEYHGKIPHKKREGVIEQFKNDPN 519

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++     +   GLNLQ+    +  F  WW+     Q I R       + G   +V V 
Sbjct: 520 SHIILMSYGAGSVGLNLQF-CRYVFLFDRWWNPAIEDQAINR-----AHRIGAAGSVTVS 573

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++A NTI++ +   L  K  + D+L 
Sbjct: 574 RMMAVNTIEQRIAAVLDQKREMFDMLF 600


>gi|302828188|ref|XP_002945661.1| hypothetical protein VOLCADRAFT_115608 [Volvox carteri f.
           nagariensis]
 gi|300268476|gb|EFJ52656.1| hypothetical protein VOLCADRAFT_115608 [Volvox carteri f.
           nagariensis]
          Length = 935

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 29/170 (17%)

Query: 50  EVHDEKIKALEVIIEKA--------NAAPI--IVAYHFNSDLARLQKAFPQGRTL----- 94
           E    K+ AL   +  A        +  PI  +V   F   L  + +A            
Sbjct: 751 EGASAKVAALMAALRSAAAQQPMYGSGGPIKSVVFSQFTGMLNLVGRALEAAGMRYVRLD 810

Query: 95  -----DKDPCTIQEW--NEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                      ++++   E   P+       + G G+NL    + +     WW+    +Q
Sbjct: 811 GCTPAKARADMVRDFARREPDSPVVFLVSLKAGGVGMNLT-AASHVHLLDPWWNPSVEEQ 869

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R+      + G  R V V+  +A +TI+E +L     K  + +   +
Sbjct: 870 AMDRV-----HRLGQTRDVEVFRYVAADTIEERMLLLQERKRELANAAFD 914


>gi|71022805|ref|XP_761632.1| hypothetical protein UM05485.1 [Ustilago maydis 521]
 gi|74699657|sp|Q4P328|SWR1_USTMA RecName: Full=Helicase SWR1
 gi|46101185|gb|EAK86418.1| hypothetical protein UM05485.1 [Ustilago maydis 521]
          Length = 1830

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-Q 102
            K++ L++++ +       I++       L  L         +     G T  +    + +
Sbjct: 1534 KLQQLDILMRRLKEGGHRILIFTQMTRVLDILESFLNYHGYRYLRLDGATKVESRQALTE 1593

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++N + +I        S G G+NL  G + ++F+ L W+     Q ++R       + G 
Sbjct: 1594 QFNRDARISAFILSTRSGGLGINLT-GADTVLFYDLDWNAAIEAQCMDR-----AHRIGQ 1647

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  + ++TI+E +L++   K  + ++++ 
Sbjct: 1648 TRDVHIYRFVTEHTIEENMLRKANQKRLLDNVVIQ 1682


>gi|242045780|ref|XP_002460761.1| hypothetical protein SORBIDRAFT_02g034440 [Sorghum bicolor]
 gi|241924138|gb|EER97282.1| hypothetical protein SORBIDRAFT_02g034440 [Sorghum bicolor]
          Length = 857

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 19  NIEAFNSASKTVKCLQLA----NGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAP 70
           ++ A NSA    K  Q         +              KI AL      +IE   +A 
Sbjct: 650 DLTAQNSA---GKVTQSVKGRKCSGILSRLPSLVDFKTSTKIDALREEIRNMIEHDGSAK 706

Query: 71  IIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASC 119
            IV   F S L  +Q +  +             + +    I  +  +    +      + 
Sbjct: 707 GIVFSQFTSFLDLIQFSLEKSGIKCVQLNGAMNITEKGRAIDTFTRDPDCRIFLMSLKAG 766

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G  LNL    + +     WW+     Q  +RI      + G  + +     +  +T++E 
Sbjct: 767 GVALNLTVASH-VFLMDPWWNPAVESQAQDRI-----HRIGQFKPIKSTRFVIGDTVEER 820

Query: 180 VLQRLRTKSTIQDLLL----NALKKET 202
           +LQ    K  + +  +    +A+ K T
Sbjct: 821 ILQLQEKKHLVFEGTVGDSPDAMSKLT 847


>gi|297741293|emb|CBI32424.3| unnamed protein product [Vitis vinifera]
          Length = 1112

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 23/176 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARL-----QKAFPQGRT--- 93
           E  W E+   K+  L  ++    +     I++  ++   L        ++ +P  R    
Sbjct: 706 EGIWVEL-SGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 764

Query: 94  --LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +++      +      + G GLNL  GGN LV F   W+    +Q   
Sbjct: 765 TSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAAA 823

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R+      + G K+ V++Y  ++  TI+E V QR  +K  +Q  ++   +K+++  
Sbjct: 824 RVW-----RDGQKKRVYIYRFLSTGTIEEKVFQRQMSKEGLQK-VIQQEQKDSLKT 873


>gi|225428788|ref|XP_002282100.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 23/176 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARL-----QKAFPQGRT--- 93
           E  W E+   K+  L  ++    +     I++  ++   L        ++ +P  R    
Sbjct: 528 EGIWVEL-SGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 586

Query: 94  --LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             ++K    +  +++      +      + G GLNL  GGN LV F   W+    +Q   
Sbjct: 587 TSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAAA 645

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R+      + G K+ V++Y  ++  TI+E V QR  +K  +Q  ++   +K+++  
Sbjct: 646 RVW-----RDGQKKRVYIYRFLSTGTIEEKVFQRQMSKEGLQK-VIQQEQKDSLKT 695


>gi|326428031|gb|EGD73601.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 2192

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 26/176 (14%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-KAFPQG-- 91
             NG   +        +H + ++ L+     A  + +++    N  L  +    F QG  
Sbjct: 384 FTNGPHLWQSSGKMIILH-KLLQKLK-----AQGSRVLIFSQMNRMLDLIHDYCFSQGYK 437

Query: 92  --------RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     LD+    I+ + E    +        + G GLNL    + ++ +   W+ 
Sbjct: 438 VCQIDGSMNALDRQEA-IERFQEDDSDVFAFLLSTRAGGLGLNLTK-ADAVILYDSDWNP 495

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q I+R       + G  +AV VY LI  NT+DE + QR   K  +  L+L  
Sbjct: 496 FADIQAIDR-----AHRIGQTKAVKVYRLITDNTVDEHIQQRAEAKLYLNALILQG 546


>gi|281211032|gb|EFA85198.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1376

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCT 100
              K+K ++ I+   +     +++       L  +++       Q R +D           
Sbjct: 912  SSKLKVVQEILPMWQQQGHKVLLFCQTRQMLDIVEEFIKNSNYQYRRMDGTTSIKVRQTL 971

Query: 101  IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+N   I  +        G G+NL  G N ++ F   W+     Q  ER+      + 
Sbjct: 972  VEEFNNDPILFIFLLTTKVGGLGINLT-GANRVILFDPDWNPSTDIQARERV-----YRI 1025

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+ V +Y L+   TI+E +  R   K  + + +L
Sbjct: 1026 GQKKTVTIYRLMTTGTIEEKIYHRQIYKQFLSNKIL 1061


>gi|226290524|gb|EEH46008.1| helicase [Paracoccidioides brasiliensis Pb18]
          Length = 857

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +    I++   F + L  LQ                  +       I  +N +    +  
Sbjct: 622 SKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQADRQAQIAAFNTDPNYRIFL 681

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q        R  + G  + V VY L  +
Sbjct: 682 LSTRAGGQGINLT-AADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATR 735

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T+++ +L++  +K  ++ L++   K
Sbjct: 736 GTVEQTLLEKADSKRKLEKLVIQKGK 761


>gi|71754507|ref|XP_828168.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|70833554|gb|EAN79056.1| DNA repair protein, putative [Trypanosoma brucei]
          Length = 984

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 46  KHWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTL 94
              K +   K+ A+   I        +IV   F   L  +Q                  L
Sbjct: 808 DSSKPLRGTKLDAITEYICSIPEEEKVIVFSQFGDTLDLIQLWLQKVKVKTVKLVGSLML 867

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++ + ++  +  +     + G GLNLQ   N +V    WW+     Q  +R   
Sbjct: 868 SQRQAVLRAFLHDKSVRAILISLKAGGEGLNLQI-ANHVVLVDPWWNPAVEMQAAQR--- 923

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G  R V V   + + +++E +L+    K  + +  ++ 
Sbjct: 924 --AHRIGQTRPVRVVRFVTERSVEERMLELQEKKMLVIEGTIDG 965


>gi|195033465|ref|XP_001988689.1| GH10438 [Drosophila grimshawi]
 gi|193904689|gb|EDW03556.1| GH10438 [Drosophila grimshawi]
          Length = 843

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT 100
              K + ++ ++ K  A+   +++   F   L  +++             G T  K+   
Sbjct: 649 DSGKFQFMDDLLPKLKADGHRVLLFSQFTMMLDVVEEYLKIRKHGFCRLDGGTAVKERQD 708

Query: 101 -IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N +  I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 709 LITDFNVDDNIFVFLLSTKAGGVGINLTAADTCIIH-DIDFNPYNDKQAEDRC-----HR 762

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  R V +Y LI+++TI+E +L     K  +++ + +  K E 
Sbjct: 763 MGQSRPVSIYRLISESTIEEGILMAAEEKLKLEENITSIEKGEV 806


>gi|88603125|ref|YP_503303.1| SNF2-like protein [Methanospirillum hungatei JF-1]
 gi|88188587|gb|ABD41584.1| SNF2-related protein [Methanospirillum hungatei JF-1]
          Length = 886

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 41/226 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK---------------------TVKCLQLANGAVYYD 43
            K +  ++C L  E    + +  +                       +  Q+ N    + 
Sbjct: 635 EKMESRVFCTLTHEQATLYQAVVEDMAQSLETVTGLARRGVIFRAITRLKQICNHPGLFI 694

Query: 44  EEKHWKEVHDEK----IKALEVIIEKANAAPIIVAYH-FNSDLARLQKA-------FPQG 91
            ++        K    ++ LE + E+ ++A I   Y  F   LAR+ +           G
Sbjct: 695 HDRGVLPERSGKVSRLLEMLEEVSEEGDSALIFTQYATFAEYLARILEERFLIPVFLLTG 754

Query: 92  RT-LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +T   +    ++E+   K P        + G GLNL    + +     WW+     Q  +
Sbjct: 755 KTSRRERERLVREFQSSKEPSFFVISLKAGGTGLNLTAATH-VFHVDRWWNPAVEDQATD 813

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + G K+ V V+ +IA  T++E + +    K  +   +L
Sbjct: 814 R-----TYRIGQKQNVQVHLMIAAGTLEEQIDRINAEKRILGREVL 854


>gi|327309026|ref|XP_003239204.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton rubrum CBS
            118892]
 gi|326459460|gb|EGD84913.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton rubrum CBS
            118892]
          Length = 1171

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 991  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1048

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1049 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1107

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1108 -----AHRIGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALD 1148


>gi|302667512|ref|XP_003025339.1| SWI/SNF family DNA-dependent ATPase, putative [Trichophyton
            verrucosum HKI 0517]
 gi|291189444|gb|EFE44728.1| SWI/SNF family DNA-dependent ATPase, putative [Trichophyton
            verrucosum HKI 0517]
          Length = 1167

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 991  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1048

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1049 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1107

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1108 -----AHRIGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALD 1148


>gi|302504563|ref|XP_003014240.1| SWI/SNF family DNA-dependent ATPase, putative [Arthroderma benhamiae
            CBS 112371]
 gi|291177808|gb|EFE33600.1| SWI/SNF family DNA-dependent ATPase, putative [Arthroderma benhamiae
            CBS 112371]
          Length = 1171

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 991  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1048

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1049 MKPADRNDSVLDFTDNPDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1107

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1108 -----AHRIGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALD 1148


>gi|328874980|gb|EGG23345.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 937

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDPCTIQE 103
           + +  L   I K +   +++  ++   L  L               G T +D     +  
Sbjct: 632 QFVDKLLAGIRKTSKDRVVIISNYTQTLTVLAGMMRTRGYEFFQLDGSTSVDNRQKMVDL 691

Query: 104 WNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G GLNL  G N LV +   W+     Q + R+      + G 
Sbjct: 692 FNDPSRNEFVFLLSSKAGGVGLNL-IGANHLVLYDPDWNPANDLQAMARVW-----REGQ 745

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K+ V +Y  ++  TI+E + QR  TK  +   ++  
Sbjct: 746 KKVVSIYRTLSTGTIEEKIFQRQITKMALSTSVVEG 781


>gi|225468254|ref|XP_002267456.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 848

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPI----IVAYHFNSDLARLQKAFP----QGRTLDK 96
                +  +E    LE + +  +   +    IV   +   L  L+        Q R LD 
Sbjct: 666 GNSSLKSSNETTSGLENLSDSHSEGLLKETSIVFSQWTRMLDLLESCLKNSSIQYRRLDG 725

Query: 97  D------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     ++++N   ++ ++     +   GLN+    ++L+   LWW+     Q I+
Sbjct: 726 TMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL-DLWWNPTTEDQAID 784

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           R       + G  R V V  L  ++T+++ +L   + K  +
Sbjct: 785 R-----AHRIGQTRPVTVLRLTVKDTVEDRILALQQKKREM 820


>gi|2213862|gb|AAC47719.1| PfSNF2L [Plasmodium falciparum]
          Length = 1422

 Score = 98.5 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 37/224 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H  
Sbjct: 560 KLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI 619

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-- 100
           E    K+  L+ ++ +     + +++       L  +      K +P  R     P    
Sbjct: 620 E-TSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 678

Query: 101 ---IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 679 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 732

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V VY  + QN+++E +++R   K  +  L++   K
Sbjct: 733 AHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 776


>gi|324502629|gb|ADY41155.1| DNA excision repair protein ERCC-6 [Ascaris suum]
          Length = 1156

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +KAL  + +  N   +++       L  L+K                 +      ++++N
Sbjct: 603 LKALLKLWKDQN-QKVLLFSQSRQMLTLLEKFVIKEGYEYLRMDGSTPIGSRQPLVEKFN 661

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I L        G G+NL  G N +V F   W+     Q  ER       + G +RA
Sbjct: 662 TNEDIFLFLLTTKVGGLGVNLT-GANRVVIFDPDWNPSTDVQARERAW-----RIGQERA 715

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V VY L+   TI+E + QR   K  + + +L
Sbjct: 716 VTVYRLLTSGTIEEKIYQRQIFKQFLANRVL 746


>gi|241951878|ref|XP_002418661.1| helicase, putative [Candida dubliniensis CD36]
 gi|223642000|emb|CAX43964.1| helicase, putative [Candida dubliniensis CD36]
          Length = 1636

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++   +     ++       L  L++             G 
Sbjct: 1351 PDKTLLQYDCGKLQKLATLLQDLTSKGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1410

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1411 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1469

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1470 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1510


>gi|156037672|ref|XP_001586563.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980]
 gi|154697958|gb|EDN97696.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 938

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAY----HFNSDLARLQKAF---------PQGRTLDKDP 98
           +    + LE I  +     I+VA     ++ S L  L               G T     
Sbjct: 619 NSNVAQLLESIPPEILKKNIVVASILVSNYTSTLDLLMSHLSSLNLPFLRLDGSTPQAKR 678

Query: 99  CT-IQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +  +N     K         S G G+NL  G + LV F + W+     Q + RI   
Sbjct: 679 QDLVNTFNKTPASKYFAFLLSAKSGGAGINL-IGASRLVLFDVDWNPATDLQAMARI--- 734

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G KR+V +Y  +    +DE + QR  TK  + D +++  K E 
Sbjct: 735 --HRDGQKRSVKIYRFLMSGGMDEKIYQRQVTKIGLADSVMDGKKNEA 780


>gi|124803472|ref|XP_001347729.1| PfSNF2L [Plasmodium falciparum 3D7]
 gi|23495979|gb|AAN35642.1|AE014836_39 PfSNF2L [Plasmodium falciparum 3D7]
          Length = 1426

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 37/224 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H  
Sbjct: 563 KLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI 622

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-- 100
           E    K+  L+ ++ +     + +++       L  +      K +P  R     P    
Sbjct: 623 E-TSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 681

Query: 101 ---IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 682 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 735

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V VY  + QN+++E +++R   K  +  L++   K
Sbjct: 736 AHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 779


>gi|255544141|ref|XP_002513133.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223548144|gb|EEF49636.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 993

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 72  IVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           I+   + S L  ++          +      TL      ++++N + ++ ++     +  
Sbjct: 838 IIFSQWTSMLDLVEFSLNQHCIQYRRLDGTMTLGARDRAVKDFNTDPEVTVMLMSLKAGN 897

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLN+      ++   LWW+     Q ++R       + G  R V V  L  ++T+++ +
Sbjct: 898 LGLNM-VAACHVILLDLWWNPTTEDQAVDR-----AHRIGQTRPVTVTRLTIKDTVEDRI 951

Query: 181 LQRLRTKS 188
           L     K 
Sbjct: 952 LALQEEKR 959


>gi|261333966|emb|CBH16960.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 984

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 54  EKIKALEV-IIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+ A+   I        +IV   F   L  +Q                  L +    ++
Sbjct: 816 TKLDAITEYICSIPEEEKVIVFSQFGDTLDLIQLWLQKVKVKTVKLVGSLMLSQRQAVLR 875

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + ++  +  +     + G GLNLQ   N +V    WW+     Q  +R       + G 
Sbjct: 876 AFLHDKSVRAILISLKAGGEGLNLQI-ANHVVLVDPWWNPAVEMQAAQR-----AHRIGQ 929

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V V   + + +++E +L+    K  + +  ++ 
Sbjct: 930 TRPVRVVRFVTERSVEERMLELQEKKMLVIEGTIDG 965


>gi|170115166|ref|XP_001888778.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase [Laccaria
            bicolor S238N-H82]
 gi|164636254|gb|EDR00551.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase [Laccaria
            bicolor S238N-H82]
          Length = 1767

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L  ++  +KA    +++       L  L+              G T  +D   I +
Sbjct: 1501 KLQELANLLRDKKAGGHRVLIFTQMTKILDILEIFLNFHGYLYLRLDGATKIEDRQYITE 1560

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + ++    A   S G G+NL  G + +VF+   ++ +     ++R    R  + G 
Sbjct: 1561 RFNADPRVFCFIASSRSGGVGINLT-GADTVVFYDSDFNPQ-----MDRQCEDRAHRIGQ 1614

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  ++Q+T++E +L++   K ++ D+++ 
Sbjct: 1615 IRDVHIYRFVSQHTVEEAMLRKANQKRSLDDIVIQ 1649


>gi|14090511|gb|AAK53539.1| DOMINO B [Drosophila melanogaster]
          Length = 2497

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1772

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1773 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|6822074|emb|CAB71002.1| TATA box binding protein (TBP) associated factor (TAF)-like protein
            [Arabidopsis thaliana]
          Length = 2049

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 37/201 (18%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---------ANA------APIIVAYH 76
               + NG      E H  + H  K+ AL+ I+E+         ++         +++   
Sbjct: 1773 LAAMINGCSDIITELHKVQ-HSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQ 1831

Query: 77   FNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + L  ++K                     +K    ++ +N +  I +L       G G
Sbjct: 1832 HKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLG 1891

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQ-MIERI-----GVTRQRQAGFKRAVFVYYLIAQNTI 176
            LNL    + LVF    W+     Q     +      + R  + G KR V V+ LI + T+
Sbjct: 1892 LNLT-SADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTL 1950

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E V+   + K ++ + ++NA
Sbjct: 1951 EEKVMSLQKFKVSVANTVINA 1971


>gi|299116533|emb|CBN74721.1| SNF2-related domain-containing protein [Ectocarpus siliculosus]
          Length = 1075

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 23/167 (13%)

Query: 48  WKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           ++     K+  LE +++          ++VA +F S L  L+               G T
Sbjct: 751 YETGASGKMTVLEALLKAVRREYPGDKVVVASNFTSALDVLETLAERNAWGFLRLDGGTT 810

Query: 94  LDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +     +  +N      + L +    + G GLNL  G N +V F   W+     Q + R
Sbjct: 811 TNARQNLVDRFNRASPEDLFLFYLSTKAGGVGLNL-VGANRIVLFDSDWNPATDDQAMAR 869

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G  + V +Y L++  T++E + QR   K  + DL+ ++
Sbjct: 870 VW-----RLGQTKEVSMYRLLSTGTLEESIFQRQIFKGALYDLIHDS 911


>gi|330931645|ref|XP_003303483.1| hypothetical protein PTT_15707 [Pyrenophora teres f. teres 0-1]
 gi|311320499|gb|EFQ88422.1| hypothetical protein PTT_15707 [Pyrenophora teres f. teres 0-1]
          Length = 1731

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 78/214 (36%), Gaps = 34/214 (15%)

Query: 16   QGENIEAFNSASKTVKCLQL----ANGAVYYDEEKHWKEVH----------DEKIKALEV 61
              + ++    A+ +   +QL     +  VY  E +   +V             K+  LE+
Sbjct: 991  SDKQLKQQERANLSNILMQLRKCLCHPFVYSREIEERSDVAAVSHRNLVEASAKLSLLEM 1050

Query: 62   IIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI 109
            ++ K +     +++   F   L  ++      +   +              I ++N    
Sbjct: 1051 LLPKLHERGHRVLIFSQFLDMLNIIEDFLDGMQLSYQRLDGSMGSLEKQKRIDQFNAPDS 1110

Query: 110  PLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            PL        + G G+NL    + ++     W+  +  Q I R       + G K+ V  
Sbjct: 1111 PLFAFLLSTRAGGVGINL-ATADTVIILDPDWNPHQDLQAIAR-----AHRIGQKKKVLC 1164

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              L  + +++E ++Q  + K  +  +++  L +E
Sbjct: 1165 LQLATRASVEEKIMQMGKKKMALDKVVVQDLDRE 1198


>gi|302693046|ref|XP_003036202.1| hypothetical protein SCHCODRAFT_50771 [Schizophyllum commune H4-8]
 gi|300109898|gb|EFJ01300.1| hypothetical protein SCHCODRAFT_50771 [Schizophyllum commune H4-8]
          Length = 1898

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 20/197 (10%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
             D   + ++    A K +   QL             +    E I A        +   ++
Sbjct: 1633 VDRPADGLKDIQHAPKLLALKQLLTDCGIGVTASAAESGKSELIDAGPESAGAFSQHRVL 1692

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +       L  ++                  G    K    +Q +N +  I  L      
Sbjct: 1693 IFCQMKQMLDIIESDLFKQHMPSVTYMRLDGGTDASKRHAIVQTFNSDPSIDCLLLTTHV 1752

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GL L  G + ++F    W+  +  Q ++R       + G K+ V VY LI + T++E
Sbjct: 1753 GGLGLTLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITKGTLEE 1806

Query: 179  LVLQRLRTKSTIQDLLL 195
             ++   R K  I + ++
Sbjct: 1807 KIMGLQRFKLNIANSVV 1823


>gi|124807036|ref|XP_001350892.1| DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
 gi|23497022|gb|AAN36572.1|AE014852_16 DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
          Length = 1647

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 22/159 (13%)

Query: 52   HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDK 96
               KI+A+    + +I   +    ++   + S L  ++    +              + +
Sbjct: 1475 SSTKIEAVYEEVQNVINNTDDK-CLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISR 1533

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +        + ++ +L     + G GLNLQ   N +     WW+     Q I+R      
Sbjct: 1534 NNILYNFNQDKQLRVLLISLKAGGEGLNLQV-ANRIFIVDPWWNPAAELQAIQR-----A 1587

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V+    I +NT++E ++Q    K  + D  +
Sbjct: 1588 HRIGQTKTVYAIRFIIENTVEEKIIQLQNKKQLVFDSTI 1626


>gi|28573600|ref|NP_788424.1| domino, isoform E [Drosophila melanogaster]
 gi|28380650|gb|AAM70872.2| domino, isoform E [Drosophila melanogaster]
          Length = 2497

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1772

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1773 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|302784062|ref|XP_002973803.1| hypothetical protein SELMODRAFT_414152 [Selaginella moellendorffii]
 gi|300158135|gb|EFJ24758.1| hypothetical protein SELMODRAFT_414152 [Selaginella moellendorffii]
          Length = 338

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT--- 93
            + E+ WKE    K++AL   +E    +  +V   + + L  L     +K F   R    
Sbjct: 164 VNVEEQWKE--SSKVEALLQQLETLRESKSVVFSQWTAFLDLLEIPLKRKNFRFVRLDGT 221

Query: 94  --LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               K    ++++ N   + ++     + G GLNL    N  +    WW+    +Q I R
Sbjct: 222 LSQHKREQVLKDFSNIPDVAVMLISLKAGGVGLNLTAASNAFLM-DPWWNPAVEEQAIMR 280

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           I      + G  + V +   I +++++E + Q    K  +
Sbjct: 281 I-----HRIGQTQNVSIKRFIVKDSVEERMQQVQARKQRL 315


>gi|254582288|ref|XP_002497129.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
 gi|238940021|emb|CAR28196.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
          Length = 810

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K++ L+ ++         +++   F   L  L+                   D    
Sbjct: 559 SSGKLQVLQKLVLPLVEKGHKVLIFSQFIQMLDLLEDWCELNSLNALRIDGSVNNDTRKE 618

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +++++    K  +      + G G+NL    + +V F   W+ +   Q ++R       
Sbjct: 619 QLEKFDKKSSKEQVFLLSTRAAGLGINL-AAADTVVLFDSDWNPQVDLQAMDRC-----H 672

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G    V VY L   NT++ ++L R  +K  ++ L++ 
Sbjct: 673 RIGQTNPVIVYRLCCDNTVEHVILTRATSKRRLEKLVIQ 711


>gi|167519292|ref|XP_001743986.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777948|gb|EDQ91564.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1542

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
            D  RL+      R  D       ++N+   P  L      +   GLN+ YGGN ++ F +
Sbjct: 1065 DFFRLEGETSSARRKD----MCDQFNQPDEPCRLFLVSIRAGATGLNM-YGGNRVILFDV 1119

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+     Q I R       + G ++ V+VY L+A  TI+E +L R   K TI   +++
Sbjct: 1120 SWNPATDNQAISRC-----HRYGQQKTVYVYRLVAAGTIEEHILSRQINKMTIFQNVID 1173


>gi|15231009|ref|NP_188635.1| SNF2 domain-containing protein / helicase domain-containing protein /
            RING finger domain-containing protein [Arabidopsis
            thaliana]
 gi|11994776|dbj|BAB03166.1| transcription factor-like protein [Arabidopsis thaliana]
          Length = 1047

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 21/168 (12%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFP 89
            Q+ + +  YD++             L        A   I+   +   L     R+ ++  
Sbjct: 862  QMPSSSRPYDDDDVTIVEPMR----LHSSSPSQGAVKTIIFSQWTGMLDLVELRILESGI 917

Query: 90   QGRTLD-------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            + R LD       +D    +   +  + ++     +   GLN+      ++   LWW+  
Sbjct: 918  EFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNM-VAACHVILLDLWWNPT 976

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q I+R       + G  R V V  +  ++T+++ +L+    K T+
Sbjct: 977  TEDQAIDR-----AHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTM 1019


>gi|325107086|ref|YP_004268154.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
 gi|324967354|gb|ADY58132.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
          Length = 610

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 23/204 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   ++E    L   G+ I   +     ++  Q+ N     D         D  +  +E
Sbjct: 378 AYDIAEKEGVVQLNDMGDEITIQHVFELVMRLKQITN----CDPLTGESAKKDRLVADME 433

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPL 111
            I   A+ A  I+   +   +  L +   Q           T  ++P   Q   +    L
Sbjct: 434 EI--AASGAKAILFSQWTKTIDWLYEHTKQFGALVYHGGVPTKQREPILKQFKEDPNSHL 491

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ+    +  +  WW+     Q I R       + G K  V V   I
Sbjct: 492 LLMSYGTGAVGLNLQFS-QYVFLYDRWWNPAIEDQAINR-----AHRIGVKNPVIVTRFI 545

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
            ++T++E +   L+ K  I + +L
Sbjct: 546 CKDTVEERIDLVLQQKRAIFEKVL 569


>gi|207345463|gb|EDZ72281.1| YGL163Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 405

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 46  KHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +  +  +  K   LE     I+  +   I++  ++   L  ++K                
Sbjct: 241 RDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTM 300

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +++K    +  +N  EG+  +      + G G+NL  G N L+     W+    QQ + R
Sbjct: 301 SINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQQALAR 359

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           +      + G K+  F+Y  I+  TI+E +L
Sbjct: 360 VW-----RDGQKKDCFIYRFISTGTIEEKIL 385


>gi|125589589|gb|EAZ29939.1| hypothetical protein OsJ_13993 [Oryza sativa Japonica Group]
          Length = 1132

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--P 70
            C L    I      +   +C          D E +WK     K+  L  I+E        
Sbjct: 933  CPLCRSPITKSELITLPSQCR------FQVDPENNWK--DSCKVIKLIKILEGLQEKREK 984

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP-LLFAHPASC 119
             IV   F S    L+  F Q                    ++E++E K   +L     + 
Sbjct: 985  SIVFSQFTSFFDLLEVPFNQKGIKFLRFDGKLSQKHREKVLKEFSESKDKLVLLMSLKAG 1044

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    N +     WW+    +Q I RI      + G KRAV V   I ++T++E 
Sbjct: 1045 GVGLNLTAASN-VFLMDPWWNPAVEEQAIMRIP-----RIGQKRAVQVRRFIVKDTVEER 1098

Query: 180  VLQRLRTKS 188
            + +    K 
Sbjct: 1099 MQKVQACKQ 1107


>gi|91081375|ref|XP_972116.1| PREDICTED: similar to helicase [Tribolium castaneum]
 gi|270005181|gb|EFA01629.1| hypothetical protein TcasGA2_TC007199 [Tribolium castaneum]
          Length = 1011

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 37/222 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKHWKEVHDE 54
           K QRE Y  +  ++I+  N A K  K       +QL   +N    +D  E        + 
Sbjct: 362 KMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH 421

Query: 55  KIKALEVIIEK--------ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            +     ++             + +++       L  L+              G+T  +D
Sbjct: 422 LVYNCGKMVLLDKLLPKLKEQDSRVLIFSQMTRMLDILEDYCHWRQYNYCRLDGQTPHED 481

Query: 98  PC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+NE      +      + G G+NL    ++++ +   W+ +   Q ++R    
Sbjct: 482 RQRQINEYNEPNSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR---- 536

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ LI +NT++E +++R   K  +  L++ 
Sbjct: 537 -AHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQ 577


>gi|37699520|gb|AAB95091.3| 89B helicase [Drosophila melanogaster]
          Length = 1924

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 1675 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1729

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 1730 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1788

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1789 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1843

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1844 TANTVVSA 1851


>gi|297836766|ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332105|gb|EFH62524.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1181

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +  +++  K     +++       L  L+          +       + +    
Sbjct: 724 SGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMAL 783

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N    + +        G G NL  G N ++ F   W+     Q  ER       + 
Sbjct: 784 IDEFNNSDDVFVFVLTTKVGGLGTNLT-GANRVIIFDPDWNPSNDMQARERAW-----RI 837

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G K+ V VY LI + TI+E V  R   K  + + +L
Sbjct: 838 GQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 873


>gi|295673658|ref|XP_002797375.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226282747|gb|EEH38313.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 1084

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP-----QGRTLD 95
            DE +    +   KI+ L  I++K +     IV   F S L +++           R   
Sbjct: 826 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKSANIGYARYDG 885

Query: 96  KDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+
Sbjct: 886 AMRNDLRENSLDRLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAID 944

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 945 RV-----HRLNQTIDVKIYKLTVRNTVEERIVDLQERKRELANATIEG 987


>gi|168048890|ref|XP_001776898.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162671754|gb|EDQ58301.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1122

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 31/207 (14%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--- 63
               EL   +    +  F+ ++  ++ LQ  + A   DE   WK     K+  L  ++   
Sbjct: 839  LDAELKSQIIAAGLSRFSDSTDNIEVLQ--SRASLSDEG--WK--FSGKLACLYWLLRTV 892

Query: 64   ----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-- 107
                       ++V  +F   L  +Q                    K    + + N G  
Sbjct: 893  YTSRTARQKDRVVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSGVG 952

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + +      + G GLNL  G N LV F   W+     Q I RI      + G  + V +
Sbjct: 953  DVFVFLLSSKAGGTGLNL-IGANRLVLFDPDWNPATDSQAIARIW-----REGQLKPVLI 1006

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Y L++  +I+E + QR   K  +   +
Sbjct: 1007 YRLLSTGSIEEKIYQRQIMKGGMSAAV 1033


>gi|290999423|ref|XP_002682279.1| predicted protein [Naegleria gruberi]
 gi|284095906|gb|EFC49535.1| predicted protein [Naegleria gruberi]
          Length = 1635

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++        I++    +  L  L+              G+
Sbjct: 1317 PDKRLLQFDCGKLQKLSNLLKDLKRGGHRILIFTQMSKMLDVLESFMSMNGHSYFRLDGQ 1376

Query: 93   TLDKDPC-TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  ++    ++ +N + KI        S G G+NL  G + ++F+   W+     Q  +R
Sbjct: 1377 TKLEERQYMMERFNTDPKIFAFILSTRSGGVGINLT-GADTVIFYDSDWNPAMDAQAQDR 1435

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   + G  R V +Y LI+++TI+E +L +   K  + ++++
Sbjct: 1436 C-----HRIGQTRNVNIYRLISESTIEERILLKANQKRHMNEIVI 1475


>gi|255076739|ref|XP_002502040.1| predicted protein [Micromonas sp. RCC299]
 gi|226517305|gb|ACO63298.1| predicted protein [Micromonas sp. RCC299]
          Length = 1481

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDK 96
            Y + E+  K +  EK+  L     +      ++       L  L+ A  +     R +D 
Sbjct: 940  YGEAERSGKLLVTEKVLGLW----REQGHRCLLFSQTQQMLDILEAAIARAGYTYRRMDG 995

Query: 97   DP------CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      I E+N +  + +        G G+NL  G + ++ +   W+     Q  E
Sbjct: 996  TTPVSHRMRLIDEFNGDDDVFVFLLTTKVGGLGVNLT-GADRVLLYDPDWNPSTDAQARE 1054

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R       + G  + V VY LI   TI+E V  R   K  +   +L   K+ 
Sbjct: 1055 RAW-----RIGQTKEVTVYRLITAGTIEEKVYHRQIYKEFLTSKVLKDPKQR 1101


>gi|195486513|ref|XP_002091544.1| domino [Drosophila yakuba]
 gi|194177645|gb|EDW91256.1| domino [Drosophila yakuba]
          Length = 3195

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   ++V       L  L+              G T  +    + +
Sbjct: 1665 KLQTMDRLLRQLKVNGHRVLVFTQMTKMLDVLESFLNYHGHIYLRLDGSTRVEQRQILME 1724

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1725 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1778

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1779 TRDVHIYRLVSERTIEVNILKKANQKRMLTDMAIEG 1814


>gi|190347724|gb|EDK40055.2| hypothetical protein PGUG_04153 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 990

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 38/231 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYD--EEKHWKEVHD 53
             QR  Y  +  ++I+A N A+K           ++  +  N    ++  E        +
Sbjct: 373 DMQRSWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 432

Query: 54  E------KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK 96
                  K+K L+ +++  ++  + +++    +  L  L         Q     G+T   
Sbjct: 433 HLVYNAEKMKILDQLLKKFQSEGSRVLIFSQMSRMLDILEDYCAFREFQYCRIDGQTDHA 492

Query: 97  DP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R   
Sbjct: 493 DRVNAIDEYNKPGSEKFVFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR--- 548

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               + G  + V V+  I +N I+E VL+R   K  +  L++   +   I 
Sbjct: 549 --AHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQQGRNSNIG 597


>gi|25013136|gb|AAN71681.1| SD16865p [Drosophila melanogaster]
          Length = 673

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
            QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 424 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 478

Query: 84  LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
           +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 479 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 537

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 538 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 592

Query: 190 IQDLLLNA 197
             + +++A
Sbjct: 593 TANTVVSA 600


>gi|297812401|ref|XP_002874084.1| hypothetical protein ARALYDRAFT_489124 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297319921|gb|EFH50343.1| hypothetical protein ARALYDRAFT_489124 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1029

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGR-- 92
             D EK+W E    KI AL   +E  +++ +  I+   + + L  LQ       F   R  
Sbjct: 853  VDVEKNWVE--SSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLD 910

Query: 93   -TLDK--DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             TL++      ++E+  +G I +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 911  GTLNQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAV 969

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G  ++V +   I + T++E +      K 
Sbjct: 970  MRI-----HRIGQTKSVKIRRFIVKGTVEERMEAVQARKQ 1004


>gi|66356826|ref|XP_625591.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
 gi|46226589|gb|EAK87577.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
          Length = 1181

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 25/174 (14%)

Query: 47  HWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ------------- 90
           +       K +AL  I++         +++       L  L     +             
Sbjct: 711 NVNGRDSGKYQALMSILKLWRDKKEHRVLIFTQGVRTLKLLSALLEKDLGLIPNKDVLTL 770

Query: 91  --GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                L      ++ +N+ + I L        G GLN+  G N ++ +  WW+     Q 
Sbjct: 771 DGSTPLSTRFSLVKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYDPWWNPMTDVQA 829

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ER       + G K+ V VY LI ++TI+E + QR   K  I   +L   K +
Sbjct: 830 KERCW-----RIGQKKEVIVYRLITRDTIEEKIFQRQLFKEFIAKQILKDPKSQ 878


>gi|20988306|gb|AAH29930.1| BTAF1 protein [Homo sapiens]
          Length = 680

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69  APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 476 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 532

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 533 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 586

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 587 TRGTLEEKIMGLQKFKMNIANTVIS 611


>gi|307180236|gb|EFN68269.1| Helicase domino [Camponotus floridanus]
          Length = 2882

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+++L+ ++ K  +    +++       L  L+                  +D+    ++
Sbjct: 1674 KLQSLDRLLRKLKSENHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTRVDQRQILME 1733

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1734 RFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1787

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1788 TRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1823


>gi|238883925|gb|EEQ47563.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 785

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKAL-EVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
           EEK    +   KI  L  +++E  +    I++  ++   L  L++   +           
Sbjct: 496 EEKFNLGMASGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGS 555

Query: 95  ---DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     + ++N    I +      S G G+NL  G + L+ F   W+     Q + R
Sbjct: 556 TPNNVRNKLVNQFNTNPDINVFLLSSKSGGMGINL-VGASRLILFDNDWNPATDLQSMSR 614

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I      + G  +  F+Y L     IDE + QR   K+ +    L+
Sbjct: 615 I-----HRDGQLKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFLD 655


>gi|202029075|gb|ACH95308.1| LP03212p [Drosophila melanogaster]
          Length = 2642

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 1118 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1177

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1178 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1231

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1232 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1267


>gi|193204424|ref|NP_496802.2| BTAF (TBP-associated factor) homolog family member (btf-1)
            [Caenorhabditis elegans]
 gi|169402775|emb|CAB02491.2| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|169402879|emb|CAB04949.2| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|169402880|emb|CAQ16159.1| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1649

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 32/191 (16%)

Query: 26   ASKTVK---CLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
            A+K+ K     QL     +  + ++  ++  D     L  ++  A+    ++   + +  
Sbjct: 1401 AAKSGKMEALKQLLIECEICKNPDEEVEQPED-----LGGLV--ASGHRALIFCQWKTSA 1453

Query: 82   ARLQKAFPQGR--------------TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQ 126
              +  A   G                       +  +NE K I +L       G GLNL 
Sbjct: 1454 KLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLT 1513

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+  +  Q I+R       + G  R V VY LI Q T++E V+   + 
Sbjct: 1514 -GADTVIFLDHDWNPMKDLQAIDR-----AHRLGQTRNVNVYRLITQGTVEEKVMSLAKF 1567

Query: 187  KSTIQDLLLNA 197
            K      L+ A
Sbjct: 1568 KLNTAQALIGA 1578


>gi|302406510|ref|XP_003001091.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
 gi|261360349|gb|EEY22777.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
          Length = 1392

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 37/227 (16%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGA------------VYYDEEK 46
           K Y +     + +  D QG    A   ++  ++  +L N              +   ++K
Sbjct: 755 KLYKQMVTHNKIVVSDGQGGKTGARGLSNMIMQLRKLCNHPFVFGEVENVMNPLNISDDK 814

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTL- 94
            W+     K + L+ I+ K  A    +++ +   + +  +         Q     G T  
Sbjct: 815 LWR--TAGKFELLDRILPKYKATGHRVLMFFQMTAIMDIMEDYLRYRNYQYMRLDGTTKS 872

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    ++++N    P  +      + G GLNLQ   + ++ +   W+  +  Q      
Sbjct: 873 DERSDLLKDFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA----- 926

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 927 QDRAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 973


>gi|327280078|ref|XP_003224781.1| PREDICTED: TATA-binding protein-associated factor 172-like [Anolis
            carolinensis]
          Length = 2315

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQL------ANGAVYYDEEKHWKEVHD--- 53
            +Y +   +L  +    ++     A K     QL       NG    +  +     H    
Sbjct: 2056 EYKRITEKLAAE--NSSLRDIQHAPKLSALKQLLLDCGLGNGGSSENGTETVVAQHRILI 2113

Query: 54   -EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              ++K++  I+E     P + +  +     RL  + P G+   +     +  N+  I +L
Sbjct: 2114 FCQLKSMLDIVEHDLLKPHLPSITYL----RLDGSIPAGQ---RHSIVSRFNNDPSIDVL 2166

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL  G + +VF    W+  +  Q ++R       + G KR V VY LI 
Sbjct: 2167 LLTTHVGGLGLNLT-GADTVVFVEHDWNPMKDLQAMDR-----AHRIGQKRVVNVYRLIT 2220

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 2221 RGTLEEKIMGLQKFKMNIANTVIS 2244


>gi|312211525|emb|CBX91610.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1473

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 51   VHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDP 98
            V   KI+ L  I+EK      +IV   F S L  ++    +            R   ++ 
Sbjct: 1245 VPSTKIRQLLSILEKETPEHKVIVFSQFTSMLDLIEPFLKRADYNFTRYDGSMRNDLREA 1304

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +  N+ +  +L         GLNL    + +V    +W+    +Q I+R+      +
Sbjct: 1305 SLAKLRNDKRTRVLLCSLKCGSLGLNLT-AASRVVIMEPFWNPFVEEQAIDRV-----HR 1358

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  V VY L+  N+++E + +    K  + +  +   K 
Sbjct: 1359 LNQTVDVTVYRLLINNSVEERIQELQEAKRKLANAAIEGGKA 1400


>gi|170111204|ref|XP_001886806.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164638164|gb|EDR02443.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 928

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 52  HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQK----------AFPQG--RTLDKD 97
              K+  L+ ++ +       +++   F + L  ++               G  + +++ 
Sbjct: 652 ASGKMMVLDRLLRELFRRKHKVLLFSQFTTMLNIIEDWATDYMGWNICRIDGSSKPMERR 711

Query: 98  PCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +  N G  P    L      + G G+NL    + ++F+   W+ +   Q       
Sbjct: 712 EAMNRFQNGGDDPDAPSLFLLSTRAGGLGINL-VAADTVIFYDQDWNPQMDAQA-----Q 765

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V ++ L++ +TI+  ++QR   K  ++ L++   K
Sbjct: 766 DRAHRIGQTKPVLIFRLVSAHTIETKIMQRATEKRKLEALVIAKGK 811


>gi|225848989|ref|YP_002729153.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644628|gb|ACN99678.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 561

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 34/212 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y +F+ E    +  +     N      K  Q+ N              H  K   L+
Sbjct: 342 IDIYKRFRNEKNFQIMFKQ----NIIFSLQKLRQICNFP--------PNSYHSPKANRLK 389

Query: 61  VIIEKA--NAAPIIVAYHFNSD-----LARLQKAFPQGRT---------LDKDPCTIQEW 104
            I+++   +   +IV  +F  +        L +  PQ             +K     +  
Sbjct: 390 EIVKELTEDGEKVIVFSNFIQEGIGKIYKNLIEVLPQSSIVLYHGSLNQKEKQEAVKRFM 449

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL L    + ++FF L W+  +  Q  +R+      + G  +A
Sbjct: 450 KDKNCMVFLGSITAAGEGLTLT-SSSYIIFFDLHWNPAKVWQAEDRV-----HRIGQTKA 503

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V +Y  + +NT++E ++Q+L  K +I + L++
Sbjct: 504 VNIYNFVTKNTVEEKIIQKLEEKKSIINNLID 535


>gi|26353950|dbj|BAC40605.1| unnamed protein product [Mus musculus]
          Length = 594

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69  APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 390 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 446

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 447 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 500

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 501 TRGTLEEKIMGLQKFKMNIANTVIS 525


>gi|71034023|ref|XP_766653.1| ATP-dependent helicase [Theileria parva strain Muguga]
 gi|68353610|gb|EAN34370.1| ATP-dependent helicase, putative [Theileria parva]
          Length = 1632

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 17/151 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLF 113
            K+     I+   F+  L  L+                  +D     I  +NE  KI L  
Sbjct: 1327 KSEEHRCIIYTQFSKMLDILENWINFMGFTYIRLDGSTKIDMRQKIINRFNENTKIFLFI 1386

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +   + G G+ L  G + ++F+   W+    +Q ++R       + G  + V VY LI +
Sbjct: 1387 SSTRTGGVGITLT-GADTVIFYDTDWNPAIDRQAMDRC-----HRIGQTKDVNVYRLITE 1440

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +T++E + ++   K  + DL+++  + +  H
Sbjct: 1441 HTVEENIWRKQLQKRKLDDLIVDQGQFDIQH 1471


>gi|67541879|ref|XP_664707.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
 gi|40742118|gb|EAA61308.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
 gi|259483574|tpe|CBF79076.1| TPA: DNA repair protein Rhp26/Rad26, putative (AFU_orthologue;
           AFUA_4G03840) [Aspergillus nidulans FGSC A4]
          Length = 1193

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ +  ++E  K      ++       L  L+K                  +     
Sbjct: 735 SGKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQT 794

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N +  + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 795 MVDEFNKDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 848

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 LGQKRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 891


>gi|308808065|ref|XP_003081343.1| RA54B_CHICK DNA repair and recombination protein RAD54B (ISS)
           [Ostreococcus tauri]
 gi|116059805|emb|CAL55512.1| RA54B_CHICK DNA repair and recombination protein RAD54B (ISS)
           [Ostreococcus tauri]
          Length = 792

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-HDEKIKALEVIIEKA-NAAPIIVA 74
           G+  +A +  S      +L N A    E      +    K+  L  +     +   I++ 
Sbjct: 501 GKTDDAISPLSAIQTLQKLCNAAALASEAHRDDPIETSSKLCVLRSMFRALPSDERIVIV 560

Query: 75  YHFNSDLARL---------QKAFPQGRTLDKDPCTI-QEWNE-GKIPLLFAHPASCGHGL 123
             F + L  +         +    QG T  KD   I +++N  G+I  L     + G GL
Sbjct: 561 SGFTTTLDLIALLCEGEKLKYDRLQGSTPPKDRTAIVRKFNTTGRI--LLLSTKAGGVGL 618

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL  G N LV     W+     Q   RI      + G  +   +Y L++  TI+E + QR
Sbjct: 619 NL-VGANRLVLVDSSWNPAHDLQAQARIW-----REGQTKKCTIYRLLSTGTIEERMFQR 672

Query: 184 LRTKSTIQDLL 194
              K ++   L
Sbjct: 673 QELKGSLARTL 683


>gi|16198155|gb|AAL13882.1| LD35434p [Drosophila melanogaster]
          Length = 1207

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
           K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 820 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 879

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 880 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 933

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 934 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 969


>gi|302767836|ref|XP_002967338.1| hypothetical protein SELMODRAFT_87168 [Selaginella moellendorffii]
 gi|300165329|gb|EFJ31937.1| hypothetical protein SELMODRAFT_87168 [Selaginella moellendorffii]
          Length = 545

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-HDEKIKALEVIIEK 65
           F+ +   DL  E+        + V+ LQL       D ++  +E+    K+KA   +++ 
Sbjct: 325 FRVDEEDDLITEDGSGLKEMREAVRKLQLEAREKQEDFDRSVQEIGQSAKLKAALRVLDM 384

Query: 66  A-NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLF 113
                  ++   + S L  ++                    K    I+ +  +  + ++ 
Sbjct: 385 TPRGEKSLIFSQWTSMLNLIEPELEGAGIQFSRIDGSMSAGKRVAAIKRFSEDPDVVVML 444

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL    + ++   +WW+     Q I+R       + G  R V V   + +
Sbjct: 445 ISLRAGGCGLNL-VAASRVLLMDMWWNPTTEDQAIDR-----THRIGQTRPVHVTRFVVK 498

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            T++E VL+    K  + + + 
Sbjct: 499 QTVEEHVLEIQEKKKKLVEFVF 520


>gi|255724926|ref|XP_002547392.1| hypothetical protein CTRG_01699 [Candida tropicalis MYA-3404]
 gi|240135283|gb|EER34837.1| hypothetical protein CTRG_01699 [Candida tropicalis MYA-3404]
          Length = 1695

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++   A+    ++       L  L++             G 
Sbjct: 1408 PDKSLLQYDCGKLQRLATLLQDLTAHGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 1467

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1468 TKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1526

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  ++++   K  + ++++ 
Sbjct: 1527 C-----HRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQ 1567


>gi|195570490|ref|XP_002103240.1| GD19063 [Drosophila simulans]
 gi|194199167|gb|EDX12743.1| GD19063 [Drosophila simulans]
          Length = 1403

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 29/169 (17%)

Query: 52   HDEKIKALEVII---------EKANAAPIIVAYHFNSDLARLQK-------------AFP 89
            H  K+ AL+ ++         E  +    ++     + L  +++                
Sbjct: 1168 HSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLD 1227

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    +  +N +  I +L       G GLNL  G + ++F    W+  +  Q +
Sbjct: 1228 GSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GADTVIFVEHDWNPMKDLQAM 1286

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G K+ V VY LI +N+++E ++   + K    + +++A
Sbjct: 1287 DR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSA 1330


>gi|328703392|ref|XP_001951508.2| PREDICTED: helicase domino-like [Acyrthosiphon pisum]
          Length = 2483

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGR 92
             ++   +    K+++L+ ++ +       +++       L  L+              G 
Sbjct: 1330 PDQRLIQYDCGKLQSLDYLLRELKTGHHRVLIFTQMTKMLDILEAFLNFHGYIYLRLDGT 1389

Query: 93   TLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + + +N  K          S G G+NL  G + ++F+   W+     Q  +R
Sbjct: 1390 TKVETRQLLMERFNADKRYFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDR 1448

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI++ TI+E +L++   K  + DL +  
Sbjct: 1449 C-----HRIGQTRDVHIYRLISEKTIEENILKKANQKRLLGDLAIEG 1490


>gi|326334483|ref|ZP_08200694.1| Snf2 family helicase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693252|gb|EGD35180.1| Snf2 family helicase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 950

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 78/211 (36%), Gaps = 26/211 (12%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y + +   R     +   +    N  +      Q++N     D++     +   K + 
Sbjct: 733 KWYEREKSKVRNKLLHIDNHSQT-LNILNMLTLLRQISNHPKLLDKQ---SSIPSGKYEE 788

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRT-LDKDPCTIQEWNE 106
           +  ++E+   +    ++   F S L           ++     G T + +    ++ + +
Sbjct: 789 VINLLEQLLLSQHKALIFSSFISHLEIYEDWCKTNNIKFTTLTGDTPIPERKIQVESFQK 848

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            K I   F    +   GLNL    + ++    WW+    +Q I R       + G +  V
Sbjct: 849 DKDIMFFFISLKAGEVGLNLTT-ASYVLLLDPWWNPFAERQAIAR-----AHRLGQQHKV 902

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V   + Q+T++E ++   + K  + + ++ 
Sbjct: 903 TVIRFVTQDTLEEKIIHLQQNKKELSENIIE 933


>gi|209875623|ref|XP_002139254.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209554860|gb|EEA04905.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1071

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 85/214 (39%), Gaps = 30/214 (14%)

Query: 6    KFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDE-------EKHWK-EVHD 53
            + +     ++    +       +  ++  +  Q A G +Y  E         +WK  ++ 
Sbjct: 843  EMEMHQIKEINKGEVNKNLLQISKTTQLPEQSQQAKGVIYEREYSLIDTSGTYWKPTIYS 902

Query: 54   EKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
             KI+ L   +  +  +   +++   + S L  ++          +      ++ K    I
Sbjct: 903  TKIRTLLEYLHKDINDNQKVVIFSQWTSFLDIIEMALNCHSFNFRRLDGSISMSKRGSII 962

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              ++E K  +L     + G GLNL      +    LWW+    +Q ++RI      + G 
Sbjct: 963  SWFSESKQKILLVSIKAGGVGLNL-VAATRVYLTDLWWNPAVEEQALQRI-----YRLGQ 1016

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + V +Y ++ + +++E +LQ  + KS I   +L
Sbjct: 1017 TKTVHMYRIVCRKSVEERILQLHQLKSDISSKIL 1050


>gi|303275450|ref|XP_003057019.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226461371|gb|EEH58664.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 665

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 18/148 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           +AN   +++       L  L+K              G   +     + ++N    + +  
Sbjct: 496 RANDK-VLLFSKSTRLLDILEKFLSRRGYVYCRLDGGTAQNARQPLVDDFNNSSSMFVFL 554

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V F   W+     Q        R  + G +R V VY  IA 
Sbjct: 555 LSTKAGGVGLNIT-SANRVVVFDPDWNPALDLQA-----QDRAYRIGQRRDVNVYRFIAA 608

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TI+E+V QR   K    ++ ++A+++ 
Sbjct: 609 DTIEEIVYQRQVYKQQQSNVAVDAVRER 636


>gi|190345483|gb|EDK37379.2| hypothetical protein PGUG_01477 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1895

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 21/200 (10%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
            Y  +   +I + N A K +    L     +  D+  +  +  ++K +         +   
Sbjct: 1620 YLRINKSDIRSINHAPKLLSLRTLLLECGIGVDDSDYIGKGKNKKSQQQITAEGVISDHR 1679

Query: 71   IIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTI-QEWNE-GKIPLLFAHP 116
             ++       L  ++    +            G T  +D  +I +++NE   I +L    
Sbjct: 1680 ALIFCQLKDMLDIVENELLKKHLPSVTYMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTT 1739

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
               G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI ++T+
Sbjct: 1740 KVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITKHTL 1793

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E ++   + K  I   ++N
Sbjct: 1794 EEKIMGLQKFKMNIASTVVN 1813


>gi|110738692|dbj|BAF01271.1| putative chromodomain-helicase-DNA-binding protein [Arabidopsis
           thaliana]
          Length = 966

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 22/181 (12%)

Query: 39  AVYYDEEKHWKEVHDE--KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            V +D  + +K++ +   K++ L+ ++ K       +++   F   L  L         Q
Sbjct: 160 PVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQ 219

Query: 86  KAFPQGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G+    +    I  +N              + G G+NL    + ++ +   W+  
Sbjct: 220 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPH 278

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Q + R       + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + 
Sbjct: 279 ADLQAMAR-----AHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQN 333

Query: 203 I 203
           I
Sbjct: 334 I 334


>gi|149248584|ref|XP_001528679.1| DNA repair protein RAD5 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448633|gb|EDK43021.1| DNA repair protein RAD5 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1241

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KA 87
            +Y  +           I+ L+++ E++    +IV   F+S L  ++              
Sbjct: 1056 IYLYDPNRSSSKIQALIRHLKLLQEQSPNLKVIVFSQFSSYLDIMETELKLTSDEFHVYK 1115

Query: 88   FPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            F     ++     +  +N     GKI +L     + G GLNL    +       WW    
Sbjct: 1116 FDGRLNMNDRSKLLAAFNAPVTSGKISILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPSI 1174

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q I+RI      + G    V V   I +N+I+  +L+    K  I
Sbjct: 1175 EDQAIDRI-----HRIGQNDTVKVVRFIMENSIETKMLKIQERKKQI 1216


>gi|323455077|gb|EGB10946.1| hypothetical protein AURANDRAFT_62321 [Aureococcus anophagefferens]
          Length = 1218

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
           K+  L+ ++ +       +++       L  L+              G+T  +     I 
Sbjct: 442 KLVLLDKLLTRLKDKGHRVLIFSQMTRMLDILEDFMVMRAYDYCRIDGKTAHELREEYID 501

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N    +         + G G+NLQ   +  V +   W+ +   Q ++R       + G
Sbjct: 502 AYNAPNSEKFAFLLSTRAGGLGINLQT-ADTCVLYDSDWNPQADLQAMDRC-----HRIG 555

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ----DLLLNALK 199
             + V VY L+ +++++E V++R + K  +     D LL+A++
Sbjct: 556 QTKPVHVYRLVTEHSVEEKVVERAQQKLKLDAVVTDELLHAVR 598


>gi|213406021|ref|XP_002173782.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
 gi|212001829|gb|EEB07489.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
          Length = 867

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 51  VHDEKIKALEVII----EKANAAPIIVAYHFNSDLARL----QKAFPQGRTLD------- 95
           V   KI++   ++     +     I++   F   L  L    Q+   +    D       
Sbjct: 692 VPSSKIQSAIELVRRIRTEQPGEKILIFSQFTQFLELLSVPLQREGIRFVVYDGSMSASQ 751

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D    +  ++  + ++     +   GLNL    N +V    +++    +Q I+R     
Sbjct: 752 RDEAIHRFQHKESVQVMLVSLKAGSTGLNLT-AANHVVLLDPFYNPSVEEQAIDR----- 805

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G KR V VY +I  ++I+E +      K  +    +
Sbjct: 806 AYRIGQKREVHVYRMITADSIEERIAALQEKKRGLVRSAM 845


>gi|15242960|ref|NP_197667.1| RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/
            hydrolase, acting on acid anhydrides, in
            phosphorus-containing anhydrides / nucleic acid binding /
            protein binding / zinc ion binding [Arabidopsis thaliana]
 gi|60390961|sp|Q9FNI6|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 2; Short=SMARCA3-like protein 2
 gi|10178249|dbj|BAB11681.1| DNA repair protein RAD5 protein [Arabidopsis thaliana]
 gi|110737306|dbj|BAF00599.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005687|gb|AED93070.1| DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
          Length = 1029

 Score = 98.1 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
             D EK+W E    KI AL   +E  +++ +  I+   + + L  LQ       F   R  
Sbjct: 853  VDVEKNWVE--SSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLD 910

Query: 94   ----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    ++E+  +G I +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 911  GTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAV 969

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G  + V +   I + T++E +      K 
Sbjct: 970  MRI-----HRIGQTKEVKIRRFIVKGTVEERMEAVQARKQ 1004


>gi|322707430|gb|EFY99008.1| DNA repair and recombination protein RAD5B [Metarhizium anisopliae
           ARSEF 23]
          Length = 769

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 20/167 (11%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
             K +A+  I++     + + +++   + S L  +Q                     +D 
Sbjct: 596 SSKTEAMMQILQATLKKDGSKVVIFSQWTSFLNIIQNQLDIAGIKYSRIDGSMNTEKRDR 655

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+ +  ++ A  A C  GLNL    + ++    WW      Q I+R+      +
Sbjct: 656 AVRALDNDAETRVMLASLAVCSVGLNL-VSADTVILSDSWWAPAIEDQAIDRV-----HR 709

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            G  R   V+ LI + T++E VL   + K  +        +++  H 
Sbjct: 710 LGQTRKTTVWRLIVEGTVEERVLDVQKEKRDLVTKAFQEKERKGKHT 756


>gi|307211542|gb|EFN87620.1| Chromatin-remodeling complex ATPase chain Iswi [Harpegnathos
           saltator]
          Length = 1008

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 360 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 419

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K     + ++V       L  L         Q    
Sbjct: 420 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLVFSQMTRMLDILEDYCHWRCFQYCRL 479

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 480 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 538

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 539 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 583


>gi|220907028|ref|YP_002482339.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
 gi|219863639|gb|ACL43978.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
          Length = 1112

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 25/215 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH--DEKIK 57
              Y    ++    +                 K  Q+ N       +   +++     K+K
Sbjct: 875  ALYEATVQDSLAAISAAAGIQRRGLILATLTKLKQICNHPAQLLRQTSLQDLPHRSGKLK 934

Query: 58   --ALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRT-LDKDPCTIQEW 104
                 +    A     ++   F      LQ            F  G T   +    +  +
Sbjct: 935  RLEEMLEEALAEGDRALIFSQFAEMGKLLQLYLREQLGWETLFLSGSTPKPQREAMVDRF 994

Query: 105  NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +      +      + G GLNL    N +  F  WW+     Q  +R+      + G K
Sbjct: 995  QQDPQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPAVENQATDRVF-----RIGQK 1048

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V V+  ++  T++E + ++L +K  + + ++ A
Sbjct: 1049 RNVQVHKFVSTGTLEEKIHEQLESKKALAEQVVGA 1083


>gi|146414908|ref|XP_001483424.1| hypothetical protein PGUG_04153 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 990

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 38/231 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYD--EEKHWKEVHD 53
             QR  Y  +  ++I+A N A+K           ++  +  N    ++  E        +
Sbjct: 373 DMQRSWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 432

Query: 54  E------KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK 96
                  K+K L+ +++  ++  + +++    +  L  L         Q     G+T   
Sbjct: 433 HLVYNAEKMKILDQLLKKFQSEGSRVLIFSQMSRMLDILEDYCAFREFQYCRIDGQTDHA 492

Query: 97  DP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R   
Sbjct: 493 DRVNAIDEYNKPGSEKFVFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR--- 548

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               + G  + V V+  I +N I+E VL+R   K  +  L++   +   I 
Sbjct: 549 --AHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQQGRNSNIG 597


>gi|24583161|ref|NP_609320.2| CG5899, isoform A [Drosophila melanogaster]
 gi|7297570|gb|AAF52824.1| CG5899, isoform A [Drosophila melanogaster]
          Length = 844

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 65  KANAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           KA    +++   F   L       R++K           ++     I ++N    I +  
Sbjct: 665 KAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFL 724

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL      ++   + ++    +Q  +R       + G +R V +Y LI++
Sbjct: 725 LSTKAGGVGINLTAADTCVIH-DIDFNPYNDKQAEDRC-----HRMGQQRPVTIYRLISE 778

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +TI+E +L     K  ++  + +  K E 
Sbjct: 779 STIEEGILMAAEEKLKLEKDITSNEKGEV 807


>gi|194382816|dbj|BAG64578.1| unnamed protein product [Homo sapiens]
          Length = 677

 Score = 97.7 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69  APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 473 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 529

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 530 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 583

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 584 TRGTLEEKIMGLQKFKMNIANTVIS 608


>gi|290998113|ref|XP_002681625.1| predicted protein [Naegleria gruberi]
 gi|284095250|gb|EFC48881.1| predicted protein [Naegleria gruberi]
          Length = 489

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 52  HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI AL   +         +V   + S L  ++ A  +            +  D+D  
Sbjct: 251 SSSKIGALIEKLRVLELGTKSVVFSQWTSMLDLVEVALEKSNIKFVRLDGKMQRKDRDDA 310

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +   +  I +        G GLNL +  + +     WW+    +Q I+R+      + 
Sbjct: 311 VQKFKFDPHIQVCLISLKVGGTGLNLVWATH-VFLLDPWWNPAIEEQAIDRV-----HRI 364

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V V+  + +++++E +L   ++K+ I +  LN
Sbjct: 365 GQDKPVTVFRFVVKDSVEERILSLQKSKTKIANEALN 401


>gi|145610651|ref|XP_368232.2| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
 gi|145018030|gb|EDK02309.1| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
          Length = 1111

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 87/226 (38%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + QR  Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 423 EMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++++  A  + +++    +  L  L+               G 
Sbjct: 483 EHLV--YNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGT 540

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 541 AHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V+VY  +  NTI+E VL+R   K  +  L++ 
Sbjct: 600 -----AHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQ 640


>gi|169607597|ref|XP_001797218.1| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
 gi|160701447|gb|EAT85508.2| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
          Length = 1249

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQ 90
           DE          K+  L+ ++ K  A+   +++       L  L           +    
Sbjct: 420 DETLKALITTSGKMMLLDRLLTKLKADGHRVLIFSQMVHMLDILTDYLKLRNYTYQRLDG 479

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  +N              + G G+NL    + +V F   W+ +   Q +
Sbjct: 480 TVPASDRKIAIDHFNAPGSDDYCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAM 538

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R       + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 539 AR-----AHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 575


>gi|62087266|dbj|BAD92080.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
           170kDa variant [Homo sapiens]
          Length = 699

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69  APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 495 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 551

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 552 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 605

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E ++   + K  I + +++
Sbjct: 606 TRGTLEEKIMGLQKFKMNIANTVIS 630


>gi|145355576|ref|XP_001422035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582274|gb|ABP00329.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 589

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 19/154 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
           K++ L+ ++ +  A    +++       L  L+  F Q              D     I 
Sbjct: 354 KMQLLDRLMTRLRARGHKVLIFSQMTRMLDLLESFFQQRGEPVCRIDGSVKQDDRREFIA 413

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE  K  +      + G G+NL  GG+ ++ +   W+  +  Q ++R+      + G 
Sbjct: 414 RFNEDPKYGIFLLSTRAGGLGINLT-GGDTVIIYDSDWNPHQDLQAMDRV-----HRIGQ 467

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V VY L    +++  +L++  +K  ++ L++
Sbjct: 468 TKPVHVYRLATAKSVEGKMLKKAASKLALEKLVV 501


>gi|212533393|ref|XP_002146853.1| dsDNA-dependent ATPase (Rad54b), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072217|gb|EEA26306.1| dsDNA-dependent ATPase (Rad54b), putative [Penicillium marneffei
           ATCC 18224]
          Length = 1054

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 27/161 (16%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPC 99
             +  L   ++   +  I++  ++ S L               RL  + P      K   
Sbjct: 651 RVLDQLLHNLQTTTSEKIVLVSNYTSTLNLLGILLTSLSLPFLRLDGSTPSA----KRQS 706

Query: 100 TIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            + ++N     K         + G GLNL  G + LV F + W+     Q + RI     
Sbjct: 707 LVDDFNRAPASKCFAFLLSAKAGGTGLNLT-GASRLVLFDVDWNPATDLQAMARI----- 760

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G KR  ++Y ++ +  ++E + QR  TK  + D ++ +
Sbjct: 761 HRDGQKRHCYIYRIMLKGALEEKIWQRQVTKIGLADSVMES 801


>gi|50310019|ref|XP_455023.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644158|emb|CAH00110.1| KLLA0E23717p [Kluyveromyces lactis]
          Length = 1873

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 28/183 (15%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----- 82
            + +K L L  G    D EK   +        ++ +I +     +++       L      
Sbjct: 1627 EALKTLLLECGIGIQDVEKKSNKNPS-----IDNVISQ---HRVLIFCQLKDMLDMVEND 1678

Query: 83   RLQKAFP-------QGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILV 133
             L+K  P        G    +D    ++++NE   I  L       G GLNL  G + ++
Sbjct: 1679 LLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVI 1737

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   
Sbjct: 1738 FVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792

Query: 194  LLN 196
            ++N
Sbjct: 1793 IVN 1795


>gi|323454081|gb|EGB09951.1| hypothetical protein AURANDRAFT_36628 [Aureococcus anophagefferens]
          Length = 712

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 31/186 (16%)

Query: 27  SKTVKCLQL----ANGAVYYDEEKHWKEVH-------DEKIKALEVIIEKA--NAAPIIV 73
           S     +QL     +  ++ D E    E           K++ L+ ++ K   N   ++V
Sbjct: 497 SLLNLLMQLRKTCCHPFLFPDAEGDPDETTLEELVAASGKLRVLDRLLLKLHRNGHRVVV 556

Query: 74  AYHFNSDLA------RLQK----AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGH 121
              F+S +       RL+              +    ++ +NE   P  +      + G 
Sbjct: 557 FSQFSSMVDILDDYCRLRGWSFCRLTGATNRVRRVVNVRAFNEPSSPLFIFLMTTRAGGL 616

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   +  V +   W+ +   Q + R+      + G  + V +Y L A  T +E VL
Sbjct: 617 GINLQ-SADTCVLYDSDWNPQADLQAMARV-----HRLGQTKTVHIYRLCAAGTAEERVL 670

Query: 182 QRLRTK 187
           QR + K
Sbjct: 671 QRSQKK 676


>gi|317127485|ref|YP_004093767.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472433|gb|ADU29036.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
          Length = 1093

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 21/183 (11%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             +   +  Q+      +       +    K++ L   +E+A  +   +++   F   L+ 
Sbjct: 900  LAGLTRLRQICCHPALFMTN---YKGQSGKMERLFEYLEEAIASGRRVVLFSQFTQMLSI 956

Query: 84   LQKAFP---------QGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +Q              G T  K+   +  ++N G+  L      + G       GG+ ++
Sbjct: 957  IQDRLKGYGWQYHYLDGSTPSKERVELANQFNNGEKELFLVSLKAGGT-GLNLTGGDTVI 1015

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             F  WW+    +Q  +R+      + G K+ V V  LI   TI+E + +    K  + D 
Sbjct: 1016 LFDSWWNPAVEEQAADRV-----YRFGQKKVVQVTKLITTGTIEEKIHKLQGQKRELLDK 1070

Query: 194  LLN 196
            ++ 
Sbjct: 1071 VIQ 1073


>gi|260941370|ref|XP_002614851.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
 gi|238851274|gb|EEQ40738.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
          Length = 885

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           +L    + +  + SK    + L        E+      + + +  LE ++ K N      
Sbjct: 617 ELSSSPLSSRTTGSKVNVLVPLLLEFRTVGEKVVLVSNYAQTLDFLETVLSKLN------ 670

Query: 74  AYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNI 131
                     LQ     G T  K     + ++N+     +      + G GLNL  G + 
Sbjct: 671 ----------LQYCRLDGSTPAKVRDKLVLDFNKCPTHKIFLLSAKAGGVGLNL-VGASR 719

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ F   W+     Q + R+      + G  + VF+Y L     IDE + QR   K+ + 
Sbjct: 720 LILFDNDWNPSVDLQAMARV-----HRYGQTKPVFIYRLFTTGAIDEKIFQRQLMKNNLS 774

Query: 192 DLLLN 196
           D+ L+
Sbjct: 775 DMFLD 779


>gi|171687146|ref|XP_001908514.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943534|emb|CAP69187.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1197

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--QE 103
            H   +  +  + L  IIE            F   L  ++     G+T  K   T+  Q 
Sbjct: 768 GHKTLLFSQGTQML-DIIEA-----------FVQRLDDVRYLRMDGKTPIKQRQTLVDQF 815

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+  + +        G G+NL  G N ++ F   W+     Q  ER       + G KR
Sbjct: 816 NNDPSLDVFLLTTKVGGLGVNLT-GANRVIIFDPDWNPSTDVQARERAW-----RLGQKR 869

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V +Y L+   TI+E +  R   K  + + +L   K++T
Sbjct: 870 EVTIYRLMTAGTIEEKIYHRQIFKQFLSNKVLKDPKQQT 908


>gi|317159396|ref|XP_001827279.2| hypothetical protein AOR_1_1414024 [Aspergillus oryzae RIB40]
          Length = 1090

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 51   VHDEKIK-ALE---VIIEKAN----AAPIIVAYHFNSDLARL-----------QKAFPQG 91
            +   KI  ALE    I+ +         +++   F S L  +           ++     
Sbjct: 873  ISSSKIDRALEIVRDIVARGEPGGEREKVVIFSQFTSMLDLIEVPLARHGWAFRRYDGTM 932

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D+   T+    +    +L     +   GLNL     +++    +W+     Q + R+
Sbjct: 933  KPADRHAATVHFATDPDCLILLVSMKAGNSGLNLTAASQVIIL-DPFWNPYVEDQAVGRV 991

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G +R V V+ ++  NT+++ +L     K  + + +++
Sbjct: 992  -----HRIGQRRPVHVHRILVSNTVEDRILDFQDRKRQLIEGIVD 1031


>gi|302803682|ref|XP_002983594.1| hypothetical protein SELMODRAFT_180307 [Selaginella moellendorffii]
 gi|300148837|gb|EFJ15495.1| hypothetical protein SELMODRAFT_180307 [Selaginella moellendorffii]
          Length = 364

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
            + E+ WKE    K++AL   +E    +  +V   + + L  L+    +           
Sbjct: 190 VNVEEQWKE--SSKVEALLQQLETLRESKSVVFSQWTAFLDLLEIPLKRKNVRFVRLDGT 247

Query: 95  ---DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               K    ++++ N   + ++     + G GLNL    N  +    WW+    +Q I R
Sbjct: 248 LSQHKREQVLKDFSNIPDVAVMLISLKAGGVGLNLTAASNAFLM-DPWWNPAVEEQAIMR 306

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           I      + G  + V +   I +++++E + Q    K  +
Sbjct: 307 I-----HRIGQTQNVSIKRFIVKDSVEERMQQVQARKQRL 341


>gi|301092959|ref|XP_002997329.1| DNA repair protein, putative [Phytophthora infestans T30-4]
 gi|262110818|gb|EEY68870.1| DNA repair protein, putative [Phytophthora infestans T30-4]
          Length = 736

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 25/163 (15%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQG-------------RTL 94
              KI+AL   +E   A       I+   F + L  +Q     G                
Sbjct: 563 SSTKIEALMQELELMRARDPSGKAIIFSQFVNMLDIIQHRLQLGGVKCVKLSGNMSMSVR 622

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+     ++  +  +        + G  LNL    +I +    WW+     Q I+R    
Sbjct: 623 DRTIKAFRD--DPTVTAFLISLKAGGVALNLTVASHIFLM-DPWWNPAAENQAIDR---- 675

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  + +     I   T++E +L+    K  I +  + A
Sbjct: 676 -THRLGQFKPIQATRFIIAGTVEERILKLQEKKRLIFEGTVGA 717


>gi|195328571|ref|XP_002030988.1| GM24274 [Drosophila sechellia]
 gi|194119931|gb|EDW41974.1| GM24274 [Drosophila sechellia]
          Length = 1923

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 1674 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1728

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 1729 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1787

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1788 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1842

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1843 TANTVVSA 1850


>gi|83776027|dbj|BAE66146.1| unnamed protein product [Aspergillus oryzae]
          Length = 966

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 51  VHDEKIK-ALE---VIIEKAN----AAPIIVAYHFNSDLARL-----------QKAFPQG 91
           +   KI  ALE    I+ +         +++   F S L  +           ++     
Sbjct: 786 ISSSKIDRALEIVRDIVARGEPGGEREKVVIFSQFTSMLDLIEVPLARHGWAFRRYDGTM 845

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +  D+   T+    +    +L     +   GLNL     +++    +W+     Q + R+
Sbjct: 846 KPADRHAATVHFATDPDCLILLVSMKAGNSGLNLTAASQVIIL-DPFWNPYVEDQAVGRV 904

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G +R V V+ ++  NT+++ +L     K  + + +++
Sbjct: 905 -----HRIGQRRPVHVHRILVSNTVEDRILDFQDRKRQLIEGIVD 944


>gi|67594179|ref|XP_665781.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis TU502]
 gi|54656607|gb|EAL35548.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis]
          Length = 822

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 25/174 (14%)

Query: 47  HWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ------------- 90
           +       K +AL  I++         +++       L  L     +             
Sbjct: 352 NVNGRDSGKYQALMSILKLWRDKKEHRVLIFTQGVRTLKLLSALLEKDLGLIPNKDVLTL 411

Query: 91  --GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                L      ++ +N+ + I L        G GLN+  G N ++ +  WW+     Q 
Sbjct: 412 DGSTPLSTRFSLVKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYDPWWNPMTDVQA 470

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ER       + G K+ V VY LI ++TI+E + QR   K  I   +L   K +
Sbjct: 471 KERCW-----RIGQKKEVIVYRLITRDTIEEKIFQRQLFKEFIAKQILKDPKSQ 519


>gi|154296983|ref|XP_001548920.1| hypothetical protein BC1G_12580 [Botryotinia fuckeliana B05.10]
 gi|150843107|gb|EDN18300.1| hypothetical protein BC1G_12580 [Botryotinia fuckeliana B05.10]
          Length = 817

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
              +++   F + L  L+                    D     I+E+NE  +  L    
Sbjct: 595 GHKVLIFSQFKTQLDILEDYARELRNWKVCRIDGSVAQDFRRQQIKEFNEDPEFKLFLLS 654

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++  Q        R  + G  + V V+ L  + T
Sbjct: 655 TRAGGQGINL-ASADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVVVFRLATKGT 708

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 709 VEEDLLMSADAKRRLEKLVI 728


>gi|85724914|ref|NP_001033890.1| CG5899, isoform C [Drosophila melanogaster]
 gi|84795289|gb|ABC65886.1| CG5899, isoform C [Drosophila melanogaster]
          Length = 831

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 65  KANAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           KA    +++   F   L       R++K           ++     I ++N    I +  
Sbjct: 652 KAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFL 711

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL      ++   + ++    +Q  +R       + G +R V +Y LI++
Sbjct: 712 LSTKAGGVGINLTAADTCVIH-DIDFNPYNDKQAEDRC-----HRMGQQRPVTIYRLISE 765

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +TI+E +L     K  ++  + +  K E 
Sbjct: 766 STIEEGILMAAEEKLKLEKDITSNEKGEV 794


>gi|281361889|ref|NP_732097.2| helicase 89B [Drosophila melanogaster]
 gi|272477008|gb|AAF55260.3| helicase 89B [Drosophila melanogaster]
          Length = 1923

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 1674 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1728

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 1729 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1787

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1788 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1842

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1843 TANTVVSA 1850


>gi|331244822|ref|XP_003335050.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309314040|gb|EFP90631.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 958

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEGKIP----LL 112
              ++V   F S L  +Q                    +     ++E+NEG+ P    L 
Sbjct: 716 GHKVLVFSQFTSMLDIIQDWATELKGWRVSRIDGVTRQESRREQMKEFNEGEGPDACRLF 775

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ ++  Q  +R+      + G  + V V+  ++
Sbjct: 776 LLSTRAGGVGINL-VAADTVILFDSDWNPQQDLQAQDRV-----HRIGQTKPVLVFRFVS 829

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
            NTI+  +L++   K  ++ L++
Sbjct: 830 GNTIESKMLEKAGQKRKLETLVI 852


>gi|224052611|ref|XP_002191629.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
            [Taeniopygia guttata]
          Length = 1844

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              +++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1639 HRVLIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQ---RHSIVSRFNNDPSIDV 1695

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1696 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1749

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1750 TRGTLEEKIMGLQKFKMNIANTVIS 1774


>gi|194901180|ref|XP_001980130.1| GG16968 [Drosophila erecta]
 gi|190651833|gb|EDV49088.1| GG16968 [Drosophila erecta]
          Length = 1925

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 1676 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1730

Query: 84   LQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            +++                      +    +  +N +  I +L       G GLNL  G 
Sbjct: 1731 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1789

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1790 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1844

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1845 TANTVVSA 1852


>gi|195384048|ref|XP_002050736.1| GJ20044 [Drosophila virilis]
 gi|194145533|gb|EDW61929.1| GJ20044 [Drosophila virilis]
          Length = 3256

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 16   QGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            +   IE   + + + K   L    +       +    +    K++ L+ ++ +   +   
Sbjct: 1621 KERQIETTVAQTLSPKLTLLHPIISAMTTQFPDPRLIQYDCGKLQTLDRLLRQLKVDGHR 1680

Query: 71   IIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-QEWNEGK-IPLLFAHPASC 119
            +++       L  L+              G T  +    + + +N  K I        S 
Sbjct: 1681 VLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSG 1740

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL  G + ++F+   W+     Q  +R       + G  R V +Y L+++ TI+  
Sbjct: 1741 GVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLVSEKTIEVN 1794

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +L++   K  + D+ +  
Sbjct: 1795 ILKKANQKRMLSDIAIEG 1812


>gi|118092869|ref|XP_421689.2| PREDICTED: similar to TBP-associated factor 172 [Gallus gallus]
          Length = 1865

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1660 HRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQ---RHSIVSRFNNDPSIDV 1716

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1717 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1770

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1771 TRGTLEEKIMGLQKFKMNIANTVIS 1795


>gi|50312039|ref|XP_456051.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74689973|sp|Q6CJ38|SWR1_KLULA RecName: Full=Helicase SWR1
 gi|49645187|emb|CAG98759.1| KLLA0F21758p [Kluyveromyces lactis]
          Length = 1572

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++  K N    ++       L  L++             G 
Sbjct: 1300 PDKSLLQYDCGKLQKLAQLLQNLKDNGHRALIFTQMTKVLDILEQFLNFHGYLYMRLDGA 1359

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + +I +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1360 TKIEDRQILTERFNSDPRITVFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1418

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++ +TI+  +L++   K  + ++++ 
Sbjct: 1419 C-----HRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQ 1459


>gi|209876524|ref|XP_002139704.1| helicase SWR1 protein [Cryptosporidium muris RN66]
 gi|209555310|gb|EEA05355.1| helicase SWR1 protein, putative [Cryptosporidium muris RN66]
          Length = 1446

 Score = 97.7 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 67/164 (40%), Gaps = 19/164 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            +   E    K + L  ++          I+    +  L  L+               G  
Sbjct: 1100 RRTIEDDCGKFQILSTLLHNLKKGDHRCIIFTQMSKMLDILEAFINFHGYTYLRLDGGTK 1159

Query: 94   LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D     +  +N+ + + L  +   S G GLNL  G + ++F+   W+    +Q ++R  
Sbjct: 1160 VDARQKLVDRFNKDRRLFLFISSTRSGGVGLNLT-GADTVIFYDSDWNPAMDRQAMDRC- 1217

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y L+++ TI+E + ++   K  + D++++
Sbjct: 1218 ----HRIGQTRDVHIYRLLSEWTIEENIFRKQLQKRLLDDVVVD 1257


>gi|323454254|gb|EGB10124.1| hypothetical protein AURANDRAFT_1751 [Aureococcus anophagefferens]
          Length = 421

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           + + K + L  ++ K       +++   +   L  L                   + +  
Sbjct: 274 LDNAKCERLRELLPKLKKEGHKVLLFSQWVRLLDLLGLLCDDLDLNWSRLDGSTPITERQ 333

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + ++N+  G + +      + G G+NL  G + ++   + ++ E     I+R    R 
Sbjct: 334 QLVADFNDPAGDLDVFLLSTRAGGLGINLT-GADTVIIHDVDFNPE-----IDRQAEDRA 387

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G  + V VY L+A++T+D  ++     K  +
Sbjct: 388 HRIGQTKPVTVYRLVAEDTVDRDIIDLANRKRAV 421


>gi|315053759|ref|XP_003176254.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
 gi|311338100|gb|EFQ97302.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
          Length = 1178

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            +K W+     K+     I++    +     I+   F S L  ++          + +   
Sbjct: 999  DKRWE--TSAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGS 1056

Query: 92   -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D++   +   +     ++     +   GLNL    + ++    +W+     Q I+R
Sbjct: 1057 MKPGDRNASVLDFTDNSDCRIMLVSLKAGNSGLNL-VAASQVIILDPFWNPYIEDQAIDR 1115

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V V+ L+ +NT+++ ++     K  I +  L+
Sbjct: 1116 -----AHRIGQLRPVMVHRLLVENTVEDRIVALQDKKRQIIEGALD 1156


>gi|255577952|ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
           communis]
 gi|223530676|gb|EEF32549.1| DNA repair and recombination protein RAD26, putative [Ricinus
           communis]
          Length = 1230

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLF 113
           +     +++       L  L+          +       + +    I E+N    + +  
Sbjct: 756 REQGHRVLLFAQTQQMLDILEIFLNSGGYSYRRMDGLTPIKQRMALIDEFNNSNDVFIFI 815

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ F   W+     Q  ER       + G KR V VY LI +
Sbjct: 816 LTTKVGGLGTNLT-GANRVIIFDPDWNPSTDMQARERAW-----RIGQKRDVTVYRLITR 869

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V  R   K  + + +L
Sbjct: 870 GTIEEKVYHRQIYKHFLTNKIL 891


>gi|145491053|ref|XP_001431526.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398631|emb|CAK64128.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1668

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 37/205 (18%)

Query: 22   AFNSASKTV---KCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKA----------- 66
            A N+AS      +  +  N   +  + +    +    K   +  ++E +           
Sbjct: 825  AANAASLNNLEIQLRKCCNHPFLIQEMQNDLTKGCSNKNDYILKLVECSGKMILLDKLLN 884

Query: 67   ----NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEG--KIP 110
                    +++   F   L+ L++             G+   ++    I  +N+   K  
Sbjct: 885  KFRNEGKKMLIFSQFTMMLSILEEYLKFRQVKYEKIDGQIKARERQNAIDRFNDPQKKRE 944

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL     I+V +   W+ +   Q   R       + G  + V VY L
Sbjct: 945  VFLLSTKAGGQGINLT-AAEIVVIYDSDWNPQNDVQATAR-----AHRIGQSKEVTVYRL 998

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I ++T +  + +R   K  +   + 
Sbjct: 999  ITKDTYEAEMFERAIKKLGLDQAIF 1023


>gi|145475071|ref|XP_001423558.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390619|emb|CAK56160.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 71   IIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +++       L  L++              Q +  D+     +     KI        + 
Sbjct: 911  VLIFCQMTRMLDILEEYMLHKGYTYFRMDGQCQINDRRDMVNEFQQNDKIFAFLLSTRAG 970

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+ L    + ++F+   W+     Q  +R       + G  + V+VY LI + TI+E 
Sbjct: 971  GLGITLTQ-ADAVIFYDNDWNPTMDAQATDR-----AHRIGRTKDVYVYRLITKGTIEER 1024

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +++R + K  +Q  + + 
Sbjct: 1025 IVKRAQQKQNVQSTVYSG 1042


>gi|322817843|gb|EFZ25436.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 929

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 25/201 (12%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
           L   + G  + A   A    +    A+  +  DE          K+  L+ ++ +  AN 
Sbjct: 483 LALRILGVEVRASAQAGWEERL---ASAGIELDEASIIA--PSAKMIELDRMLREFKANG 537

Query: 69  APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHP 116
              ++  +F S L  LQ          +      +  +   ++  +N       +     
Sbjct: 538 HRCLIFSNFTSILDLLQALCVLRGYGFERIDGSTSRVERELSMIRFNAPGSACFVFLLTT 597

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+ L  G + ++ F        +   I+R    R  + G  R V VY L  +NTI
Sbjct: 598 TAGGVGVTLT-GADTVILFD-----AHYNPQIDRQAADRAHRIGQTRVVRVYRLCLKNTI 651

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +      K+++ D +++ 
Sbjct: 652 EERIHNVALRKASLGDFIVDG 672


>gi|326923770|ref|XP_003208107.1| PREDICTED: TATA-binding protein-associated factor 172-like [Meleagris
            gallopavo]
          Length = 2308

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     Q  N+  I +
Sbjct: 2103 HRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQ---RHSIVSQFNNDPSIDV 2159

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 2160 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 2213

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 2214 TRGTLEEKIMGLQKFKMNIANTVIS 2238


>gi|323449740|gb|EGB05626.1| hypothetical protein AURANDRAFT_959 [Aureococcus anophagefferens]
          Length = 472

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 32/208 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYY---------DEEKHWKE---VHDEKIKALE 60
             L      A    S     +QL     +          D  +   E       K++ L+
Sbjct: 271 LKLDDRGPAAGGYKSLVNLLMQLRKTCCHPFLFADAEGCDPGETTLEELVAASGKLRVLD 330

Query: 61  VIIEKANAAP--IIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----IQEWNEGK 108
            ++ K +A    ++V   F S +  L      + +P  R             ++ +NE  
Sbjct: 331 RLLVKLHARKHRVVVFSQFASMVDVLDDYCALRGWPFCRLTGSTNRVQRVVNVRAFNEPS 390

Query: 109 IPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            PL        + G G+NLQ   + +V +   W+ +   Q + R+      + G  + V 
Sbjct: 391 SPLFLFLMTTRAGGLGINLQ-SADTVVLYDSDWNPQADLQAMARV-----HRLGQTKTVH 444

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +Y L +Q T +E VLQR + K  + +++
Sbjct: 445 IYRLCSQGTAEERVLQRSQKKLFLSNMV 472


>gi|321261786|ref|XP_003195612.1| chromodomain helicase [Cryptococcus gattii WM276]
 gi|317462086|gb|ADV23825.1| Chromodomain helicase, putative [Cryptococcus gattii WM276]
          Length = 1502

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            ++  K+  L++++ +  ++   +++       L  +           +        D  
Sbjct: 740 VMNSGKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVR 799

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I+ +N    P         + G G+NL    + ++ F   ++ +   Q + R     
Sbjct: 800 KKSIEHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQNDLQAMAR----- 853

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 854 AHRIGQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 903


>gi|195025748|ref|XP_001986118.1| GH20710 [Drosophila grimshawi]
 gi|193902118|gb|EDW00985.1| GH20710 [Drosophila grimshawi]
          Length = 3285

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAY 75
            E   A   + K      + +       +    +    K++ ++ ++ +   +   +++  
Sbjct: 1673 EETIAQTVSPKLTLLHPIISAMTTQFPDPRLIQYDCGKLQTMDRLLRQLKVDGHRVLIFT 1732

Query: 76   HFNSDLARLQ---------KAFPQGRTLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLN 124
                 L  L+              G T  +    + + +N  K I        S G G+N
Sbjct: 1733 QMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGIN 1792

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++F+   W+     Q  +R       + G  R V +Y L+++ TI+  +L++ 
Sbjct: 1793 LT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLVSEKTIEVNILKKA 1846

Query: 185  RTKSTIQDLLLNA 197
              K  + D+ +  
Sbjct: 1847 NQKRMLSDMAIEG 1859


>gi|238882230|gb|EEQ45868.1| TATA-binding protein associated factor MOT1 [Candida albicans WO-1]
          Length = 1917

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 68   AAPIIVAYHFNSDL-----ARLQKAFP-------QGRTLDKDPCTI-QEWNE-GKIPLLF 113
                ++       L       L+K  P        G T  +D  +I +++NE   I +L 
Sbjct: 1686 EHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLL 1745

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +
Sbjct: 1746 LTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITK 1799

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +T++E ++   + K  I   ++N
Sbjct: 1800 DTLEEKIMGLQKFKMNIASTIVN 1822


>gi|222622979|gb|EEE57111.1| hypothetical protein OsJ_06974 [Oryza sativa Japonica Group]
          Length = 1028

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
             D EK+W E    KI  L   +E  + + A  I+   + + L  LQ       F   R  
Sbjct: 852  IDVEKNWVE--SSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLD 909

Query: 94   ----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L +    I+E++E K I +L     + G G+NL    N  V    WW+    +Q I
Sbjct: 910  GTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAI 968

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G  ++V +   I + T++E +      K 
Sbjct: 969  MRI-----HRIGQTKSVSIKRFIVKGTVEERMEAVQARKQ 1003


>gi|218190874|gb|EEC73301.1| hypothetical protein OsI_07472 [Oryza sativa Indica Group]
          Length = 1031

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
             D EK+W E    KI  L   +E  + + A  I+   + + L  LQ       F   R  
Sbjct: 855  IDVEKNWVE--SSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLD 912

Query: 94   ----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L +    I+E++E K I +L     + G G+NL    N  V    WW+    +Q I
Sbjct: 913  GTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAI 971

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G  ++V +   I + T++E +      K 
Sbjct: 972  MRI-----HRIGQTKSVSIKRFIVKGTVEERMEAVQARKQ 1006


>gi|18403061|ref|NP_564568.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|14532630|gb|AAK64043.1| putative DNA-binding protein [Arabidopsis thaliana]
 gi|23296945|gb|AAN13207.1| putative DNA-binding protein [Arabidopsis thaliana]
 gi|332194424|gb|AEE32545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 981

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQ- 90
           Q+A+ +   +++    +     ++   +    +N  PI  I+   +   L  ++ +  + 
Sbjct: 790 QMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIEN 849

Query: 91  ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        + +D    +  N+  + ++     +   GLN+      ++   LWW+
Sbjct: 850 SIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNM-IAACHVILLDLWWN 908

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                Q I+R       + G  R V V  +  +NT+++ +L     K  +
Sbjct: 909 PTTEDQAIDR-----AHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKM 953


>gi|164660806|ref|XP_001731526.1| hypothetical protein MGL_1709 [Malassezia globosa CBS 7966]
 gi|159105426|gb|EDP44312.1| hypothetical protein MGL_1709 [Malassezia globosa CBS 7966]
          Length = 872

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT 100
           +  KI+ L  II++       +++   F S L  L               G+T   D   
Sbjct: 687 NSGKIQQLRKIIDEVVERRDRMLIFSQFTSVLDILCVCLEHMGVKYVGFTGQTNVGDRQV 746

Query: 101 -IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++  +  IP+      + G G+NL    N +V F   ++ +  +Q  +R       +
Sbjct: 747 LVDKFTSDPTIPVFLLSTRAGGLGINL-VAANWVVLFDQDFNPQNDKQATDRC-----YR 800

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  + V V  LI++ TIDE +L     K  + D +
Sbjct: 801 IGQTKPVTVVRLISRGTIDEDILALAHRKLELADRV 836


>gi|50294037|ref|XP_449430.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528744|emb|CAG62406.1| unnamed protein product [Candida glabrata]
          Length = 920

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 69  APIIVAYHFNSDLARLQKAF---------PQGRT--LDKDPCTIQEWNEGKIPLLFAHPA 117
             +++  ++   L  +Q              G T    +D       N   I        
Sbjct: 650 EKVVIVSNYTQSLDIIQGLMNSNQLSNCRLDGATPAKQRDMLVNTFNNNPNIFGFLLSAK 709

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G + LV F   W+     Q + RI      + G KR  ++Y LI    ID
Sbjct: 710 AGGVGLNL-IGASRLVLFDNDWNPAVDLQAMSRI-----HREGQKRPCYIYRLITTGCID 763

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +LQR   K  +    L++   +T
Sbjct: 764 EKILQRQLMKHNLTRKFLSSNTSDT 788


>gi|58260538|ref|XP_567679.1| hypothetical protein CNK02030 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57229760|gb|AAW46162.1| hypothetical protein CNK02030 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1558

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYY----DEEKHWKEVHDE- 54
            K Y   Q+           +     +     +QL       Y     DE+       DE 
Sbjct: 947  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 1006

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKD 97
                  K + L+ I+ K       +++ +             D    +     G T  +D
Sbjct: 1007 IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDFRGWKYCRLDGSTKAED 1066

Query: 98   PCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              T+   +N+   P  +      + G GLNLQ   + ++ +   W+     Q        
Sbjct: 1067 RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQ-SADTVIIYDTDWNPHADLQA-----QD 1120

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K + +  
Sbjct: 1121 RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGKFDEVTT 1171


>gi|123416804|ref|XP_001304972.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121886460|gb|EAX92042.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1107

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
              K + L+ I+ K  A    I++       L  LQ              G T  D+   
Sbjct: 695 TSGKCEVLDRILPKLKATGHRILIFSQMTEVLTLLQDLLTWRDYKYLRLDGNTKSDQRQQ 754

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I ++N  + +  +      + G GLNLQ   + ++ +   W+    QQ   R+      
Sbjct: 755 LIADFNKEDSEYFIFLLSTRAGGLGLNLQT-ADTVILYDNDWNPFADQQARSRV-----H 808

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G ++ V V  L+   +I+E V++R   K T+++ ++ 
Sbjct: 809 RIGQEKPVLVISLVTAGSIEERVVERADDKKTVENKIIE 847


>gi|315041194|ref|XP_003169974.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
           118893]
 gi|311345936|gb|EFR05139.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
           118893]
          Length = 1226

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 738 SGKMQVVKSLLELWKETGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKARQS 797

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 798 MVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDMQARERAW-----R 851

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 852 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 894


>gi|225682364|gb|EEH20648.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1236

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L+           +       +     
Sbjct: 765 SGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQS 824

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N   +I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 825 LVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 878

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 879 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 921


>gi|126273285|ref|XP_001375597.1| PREDICTED: similar to high-mobility group protein 2-like 1,
            [Monodelphis domestica]
          Length = 1878

 Score = 97.7 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1673 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPAGQ---RHSIVSRFNNDPSIDV 1729

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1730 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1783

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1784 TRGTLEEKIMGLQKFKMNIANTVIS 1808


>gi|322697599|gb|EFY89377.1| helicase SWR1 [Metarhizium acridum CQMa 102]
          Length = 1732

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A +   ++       L  L++             G 
Sbjct: 1401 PDKRLLQYDCGKLQVLDKLLRKLQAGSHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1460

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1461 TKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1519

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1520 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1560


>gi|46125857|ref|XP_387482.1| hypothetical protein FG07306.1 [Gibberella zeae PH-1]
          Length = 1427

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------- 50
            K Y +     + +  D +G    A   ++  ++  +L N    +D  ++           
Sbjct: 802  KLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDVVENVMNPLNISNDL 861

Query: 51   --VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DK 96
                  K + L+ I+   +A    +++ +   + +          R++     G T  D+
Sbjct: 862  LWRTSGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRRVEYLRLDGTTKSDE 921

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    K  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 922  RSDLLREFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 975

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 976  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1020


>gi|332021363|gb|EGI61737.1| Chromatin-remodeling complex ATPase chain Iswi [Acromyrmex
           echinatior]
          Length = 1007

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 360 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 419

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K     + +++       L  L         Q    
Sbjct: 420 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 479

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 480 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 538

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 539 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 583


>gi|291404432|ref|XP_002718428.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Oryctolagus cuniculus]
          Length = 1858

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1654 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1710

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1711 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1764

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1765 TRGTLEEKIMGLQKFKMNIANTVIS 1789


>gi|156551567|ref|XP_001601734.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 879

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 232 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 291

Query: 47  HWKEVHDE------KIKALEVIIEKANAA--PIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K       +++       L  L         Q    
Sbjct: 292 PPYTTDEHLVYNCGKLVILDKLLPKLQQQQSRVLIFSQMTRMLDILEDYCHWRCYQYCRL 351

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 352 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 410

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 411 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 455


>gi|9454567|gb|AAF87890.1|AC012561_23 Similar tp transcription factors [Arabidopsis thaliana]
          Length = 1062

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQ- 90
            Q+A+ +   +++    +     ++   +    +N  PI  I+   +   L  ++ +  + 
Sbjct: 871  QMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIEN 930

Query: 91   ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         + +D    +  N+  + ++     +   GLN+      ++   LWW+
Sbjct: 931  SIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNM-IAACHVILLDLWWN 989

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 Q I+R       + G  R V V  +  +NT+++ +L     K  +
Sbjct: 990  PTTEDQAIDR-----AHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKM 1034


>gi|66809969|ref|XP_638708.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
 gi|60467321|gb|EAL65353.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1917

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 29/203 (14%)

Query: 3    QYHKFQRELYC---DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y   + E      DL    I A        K L      +   E  H   +  + ++ L
Sbjct: 1041 LYQNARDECELGAKDLLDSMIRASGKLVLLDKLL------IRLKETGHRVLIFSQMVRML 1094

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++ +          + F     RL  +       +K    +  +N    P         
Sbjct: 1095 DILADYLKGRS----FQF----QRLDGSMS----REKRSQAMDRFNAVDSPDFCFLLSTK 1142

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++ F   W+ +   Q   R       + G K  V +Y L+++++++
Sbjct: 1143 AGGLGINLST-ADTVIIFDSDWNPQNDLQAEAR-----AHRIGQKNHVNIYRLVSKSSVE 1196

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E +L+R + K  +  L++  ++K
Sbjct: 1197 EDILERAKQKMVLDHLVIQTMEK 1219


>gi|225463768|ref|XP_002267403.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1036

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKD------PCTIQEWN-EGKIPLL 112
            E       IV   + S L  ++ +      Q R LD           ++++N + ++ ++
Sbjct: 877  ETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGTMSLASRDRAVKDFNTDPEVTVM 936

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +   GLN+    ++++   LWW+     Q ++R       + G  R V V  +  
Sbjct: 937  LMSLKAGNLGLNM-VAASLVILLDLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRITI 990

Query: 173  QNTIDELVLQRLRTKSTI 190
            ++T+++ +L     K  +
Sbjct: 991  KDTVEDRILALQEDKRKM 1008


>gi|154276746|ref|XP_001539218.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414291|gb|EDN09656.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 959

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L   I    +  +++  ++ S L  L                     K    + +
Sbjct: 640 RVLDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGSTPPSKRQGLVDD 699

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N      +        + G GLNL  G + L+ F + W+     Q + RI      + G
Sbjct: 700 FNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAMARI-----HRDG 753

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 754 QKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 789


>gi|145496081|ref|XP_001434032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401154|emb|CAK66635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1103

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 71   IIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +++       L  L++              Q +  D+     +     KI        + 
Sbjct: 883  VLIFCQMTRMLDILEEYMLHKGYTYFRMDGQCQINDRRDMVNEFQQNDKIFAFLLSTRAG 942

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+ L    + ++F+   W+     Q  +R       + G  + V+VY LI + TI+E 
Sbjct: 943  GLGITLTQ-ADAVIFYDNDWNPTMDAQATDR-----AHRIGRTKDVYVYRLITKGTIEER 996

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +++R + K  +Q  + + 
Sbjct: 997  IVKRAQQKQNVQSTVYSG 1014


>gi|67466735|ref|XP_649509.1| helicase  [Entamoeba histolytica HM-1:IMSS]
 gi|56465969|gb|EAL44123.1| helicase domain-containing protein [Entamoeba histolytica
           HM-1:IMSS]
          Length = 759

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 26  ASKTVKCLQLANGAVYY----DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
            +      ++ N         D           K+K +  ++++        ++      
Sbjct: 393 LAAIDTLRKICNHPHLINKTEDLTPETIYKESSKLKYVCDLLKQFKKEGHKALIFCQTRQ 452

Query: 80  DLARLQKAFPQGRTL----------DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYG 128
            L  +++                  +K P  I ++N    + +        G G+NL  G
Sbjct: 453 MLNIIEQMMLNENFKYLRMDGLVSSNKRPEYISQFNNDPTVLVFILTTRVGGLGINLT-G 511

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+     Q  ER       + G  R V +Y LI   TI+E + Q+   K 
Sbjct: 512 ADRVIMYDPDWNPTVDSQAKERTL-----RIGQDRDVIIYRLICSGTIEEHIYQKQMAKE 566

Query: 189 TIQDLLL 195
            + D +L
Sbjct: 567 ILSDKIL 573


>gi|302893793|ref|XP_003045777.1| hypothetical protein NECHADRAFT_34187 [Nectria haematococca mpVI
            77-13-4]
 gi|256726704|gb|EEU40064.1| hypothetical protein NECHADRAFT_34187 [Nectria haematococca mpVI
            77-13-4]
          Length = 1722

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1392 PDKRLLQYDCGKLQILDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1451

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1452 TKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPAMDKQCQDR 1510

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1511 C-----HRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1551


>gi|242062862|ref|XP_002452720.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
 gi|241932551|gb|EES05696.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
          Length = 901

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++    +Q +N   K  L      S G G+NL  G + ++F+   W+    QQ  +R   
Sbjct: 29  EERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPAMDQQAQDRC-- 85

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 86  ---HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 125


>gi|148673695|gb|EDL05642.1| mCG142038, isoform CRA_b [Mus musculus]
          Length = 886

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRT-LD 95
           E    K++ L  ++   +       +I+  ++   L  L++         A   G+T + 
Sbjct: 616 EEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVS 675

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 676 QRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 733

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G K  V +Y L+   TI+E + QR  +K  +   +++  + 
Sbjct: 734 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRS 776


>gi|84997840|ref|XP_953641.1| DEAD-box family helicase [Theileria annulata]
 gi|65304638|emb|CAI72963.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 1724

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 17/151 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLF 113
            K+     I+   F+  L  L+                  +D     I  +NE  KI L  
Sbjct: 1419 KSEDHRCIIYTQFSKMLDILENWINFMGFTYIRLDGSTKIDMRQKIINRFNENTKIFLFI 1478

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +   + G G+ L  G + ++F+   W+    +Q ++R       + G  + V VY LI +
Sbjct: 1479 SSTRTGGVGITLT-GADTVIFYDTDWNPAIDRQAMDRC-----HRIGQTKDVNVYRLITE 1532

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +T++E + ++   K  + DL+++  + +  H
Sbjct: 1533 HTVEENIWRKQLQKRKLDDLIVDQGQFDVQH 1563


>gi|88319960|ref|NP_001034645.1| fibrinogen silencer-binding protein [Mus musculus]
 gi|51316246|sp|Q6PFE3|RA54B_MOUSE RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|34785459|gb|AAH57604.1| RIKEN cDNA E130016E03 gene [Mus musculus]
 gi|123227625|emb|CAM18403.1| RAD54 homolog B (S. cerevisiae) [Mus musculus]
          Length = 886

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 50  EVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRT-LD 95
           E    K++ L  ++   +       +I+  ++   L  L++         A   G+T + 
Sbjct: 616 EEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVS 675

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N       +      + G GLNL  GG+ L+ + + W+     Q + R+  
Sbjct: 676 QRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPATDIQAMSRVW- 733

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G K  V +Y L+   TI+E + QR  +K  +   +++  + 
Sbjct: 734 ----RDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRS 776


>gi|328768005|gb|EGF78053.1| hypothetical protein BATDEDRAFT_20594 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 729

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 52  HDEKIKALEV-IIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
              K+  L+  ++E +A    I+V   F   L  L+                     +  
Sbjct: 518 DSCKLVKLKSMLLEMRAQGDKILVFSQFVIMLDILEPVMEHLGIKYLRLDGTTPVGIRQS 577

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N+ +I +      S G G+NL    N+++ + + ++     Q  +R       +
Sbjct: 578 MMDEFNNDPEITVFLLTTKSGGVGINLT-SANVVIMYDIDYNPHNDAQAEDR-----AHR 631

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  RAV V+ LI  N+I++ +L+    K  +   L
Sbjct: 632 VGQTRAVTVHRLIMDNSIEQHILRLAEHKLELDAKL 667


>gi|294783586|ref|ZP_06748910.1| type III restriction enzyme, res subunit superfamily [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480464|gb|EFG28241.1| type III restriction enzyme, res subunit superfamily [Fusobacterium
           sp. 1_1_41FAA]
          Length = 400

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 15/167 (8%)

Query: 37  NGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
           NG +Y +  K    +       +K++ L+        A I++ Y+FN +   ++K     
Sbjct: 229 NGILYDNTSKVIAGLRQSAGIKDKLEYLKE-FRANTDANILIFYNFNREAKEIKKIMKVD 287

Query: 92  RTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +      I ++++              + G G+ LQY    ++FFS  W  +++ Q +
Sbjct: 288 YEVSGAVSNIPKFDDYDTLKGKTTLVQIQAGGAGIELQY-NTEVIFFSPTWSYQDYSQAL 346

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R       + G K  V VY  I   TI+E V  RL  K    + LL
Sbjct: 347 GR-----AYRIGQKNKVTVYKYIGNRTIEECVYARLDEKKDFAEKLL 388


>gi|328767223|gb|EGF77273.1| hypothetical protein BATDEDRAFT_91624 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 641

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
               IV   F   L  ++            +       +   +I+ + ++  I ++    
Sbjct: 483 GEKTIVFSQFTKMLDLIETPLGQNNIKFTRYDGSMHAKQRDDSIRRFRDDPDILVILVSL 542

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                GLNL    N ++   LWW+     Q I+R       + G  + V V+ ++ +N++
Sbjct: 543 KCGSLGLNLTC-ANRVILTDLWWNPAVENQAIDR-----AHRFGQTKDVIVHRIMIKNSV 596

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L+  + K  I +  L
Sbjct: 597 EDRILELQQRKQDIANQAL 615


>gi|255932145|ref|XP_002557629.1| Pc12g07960 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582248|emb|CAP80423.1| Pc12g07960 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 937

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KAF 88
           +Y DE ++  E+   KI+ L  I+  +A     IV   F S L +++            +
Sbjct: 691 IYNDEGENG-ELPSTKIRHLMRILNREAPDFKFIVFSVFTSMLDKIEPFLKTANIGFARY 749

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   +    ++++  N     +L     +   GLNL    + +V    +W+    +Q 
Sbjct: 750 DGGMANNHREASLEKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQA 808

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I+R+      +      V +Y ++ + T++E ++     K  + +  +  
Sbjct: 809 IDRV-----HRLNQTIDVKIYKMVIKGTVEERIVALQDRKRELANATIEG 853


>gi|83318941|emb|CAJ38808.1| Lodestar protein [Platynereis dumerilii]
          Length = 1244

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 21/157 (13%)

Query: 56   IKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            ++ ++ I +++   N +  ++   +   L  ++                    K    + 
Sbjct: 1041 LEKIKEIKKESPPGNPSKCVIVSQWTKMLDVIEYHLKSEGVQCCSIRGDMPPKKRSEIVD 1100

Query: 103  EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       ++     + G GLNL  GGN L+   L W+     Q  +RI      + G
Sbjct: 1101 LFNTPSSGPEVMLLSLRAGGVGLNL-IGGNHLIMVDLHWNPALEAQACDRI-----YRVG 1154

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ VF++  + +NT++E +    ++K  + + +L+ 
Sbjct: 1155 QKKDVFIHRFVCKNTVEEKIQMLQKSKMALAENILSG 1191


>gi|311271626|ref|XP_001925252.2| PREDICTED: TATA-binding protein-associated factor 172 [Sus scrofa]
          Length = 1877

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1673 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1729

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1730 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1783

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1784 TRGTLEEKIMGLQKFKMNIANTVIS 1808


>gi|145522682|ref|XP_001447185.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414685|emb|CAK79788.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1508

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 37/205 (18%)

Query: 22  AFNSASKTV------------KCLQ-----LANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
           A N+AS                 +Q     L       ++  +       K+  L+ ++ 
Sbjct: 684 AANAASLNNLEIQLRKCCNHPYLIQEMQNDLTKECQNKNDYINKLVESSGKMILLDKLLN 743

Query: 65  --KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEG--KIP 110
             +     +++   F   L+ L++             G+   ++    I  +N+   K  
Sbjct: 744 KFRNEGKKMLIFSQFTMMLSILEEYLKFRQVKYEKIDGQIKARERQNAIDRFNDPSKKRE 803

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL     I+V +   W+ +   Q   R       + G  + V VY L
Sbjct: 804 VFLLSTKAGGQGINLT-AAEIVVIYDSDWNPQNDVQATAR-----AHRIGQSKEVTVYRL 857

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I ++T +  + +R   K  +   + 
Sbjct: 858 ITKDTYEAEMFERAIKKLGLDQAIF 882


>gi|238881849|gb|EEQ45487.1| DNA repair protein RAD5 [Candida albicans WO-1]
          Length = 1084

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 26/159 (16%)

Query: 52   HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------------LD 95
               KI+AL    + +  ++  + +IV   F+S L  +Q                    ++
Sbjct: 907  SSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMN 966

Query: 96   KDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 ++ +N    +GK+ +L     + G GLNL    +       WW      Q I+RI
Sbjct: 967  DRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTT-ASRAYMMDPWWSPSIEDQAIDRI 1025

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G    V V   I +N+I+  +L+    K  I
Sbjct: 1026 -----HRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059


>gi|327356510|gb|EGE85367.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 1150

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 80/213 (37%), Gaps = 31/213 (14%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IE 64
            +++    L+ + +    +  + ++         Y ++        ++ ++ L  I   I 
Sbjct: 936  EKKSLSQLKKQAVRNAEAKKEYIR---------YLNDNWVTSAKIEKTMETLRSIQSRIP 986

Query: 65   KANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            + +  P   I+   F + L  LQ    +            +  +++   ++  +     +
Sbjct: 987  EGDDQPEKTIIFSQFTTLLDLLQVPIEREGWGYCRYDGSMQPSERNEAVLEFSDSKDRTI 1046

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     +   GLNL     +++    +W+    +Q I+R       + G  R V V+ + 
Sbjct: 1047 MLISLKAGNSGLNLTVASQVIIL-DPFWNPYIEEQAIDR-----AHRIGQLRPVMVHRIF 1100

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + T+++ +L+    K  + +  L+    +TI 
Sbjct: 1101 VKGTVEDRILELQDRKRALVEGALDEKASQTIG 1133


>gi|239608047|gb|EEQ85034.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            ER-3]
          Length = 1150

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 80/213 (37%), Gaps = 31/213 (14%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IE 64
            +++    L+ + +    +  + ++         Y ++        ++ ++ L  I   I 
Sbjct: 936  EKKSLSQLKKQAVRNAEAKKEYIR---------YLNDNWVTSAKIEKTMETLRSIQSRIP 986

Query: 65   KANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            + +  P   I+   F + L  LQ    +            +  +++   ++  +     +
Sbjct: 987  EGDDQPEKTIIFSQFTTLLDLLQVPIEREGWGYCRYDGSMQPSERNEAVLEFSDSKDRTI 1046

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     +   GLNL     +++    +W+    +Q I+R       + G  R V V+ + 
Sbjct: 1047 MLISLKAGNSGLNLTVASQVIIL-DPFWNPYIEEQAIDR-----AHRIGQLRPVMVHRIF 1100

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + T+++ +L+    K  + +  L+    +TI 
Sbjct: 1101 VKGTVEDRILELQDRKRALVEGALDEKASQTIG 1133


>gi|261200100|ref|XP_002626451.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            SLH14081]
 gi|239594659|gb|EEQ77240.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            SLH14081]
          Length = 1150

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 80/213 (37%), Gaps = 31/213 (14%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IE 64
            +++    L+ + +    +  + ++         Y ++        ++ ++ L  I   I 
Sbjct: 936  EKKSLSQLKKQAVRNAEAKKEYIR---------YLNDNWVTSAKIEKTMETLRSIQSRIP 986

Query: 65   KANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            + +  P   I+   F + L  LQ    +            +  +++   ++  +     +
Sbjct: 987  EGDDQPEKTIIFSQFTTLLDLLQVPIEREGWGYCRYDGSMQPSERNEAVLEFSDSKDRTI 1046

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     +   GLNL     +++    +W+    +Q I+R       + G  R V V+ + 
Sbjct: 1047 MLISLKAGNSGLNLTVASQVIIL-DPFWNPYIEEQAIDR-----AHRIGQLRPVMVHRIF 1100

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + T+++ +L+    K  + +  L+    +TI 
Sbjct: 1101 VKGTVEDRILELQDRKRALVEGALDEKASQTIG 1133


>gi|254570084|ref|XP_002492152.1| Essential abundant protein involved in regulation of transcription
            [Pichia pastoris GS115]
 gi|238031949|emb|CAY69872.1| Essential abundant protein involved in regulation of transcription
            [Pichia pastoris GS115]
 gi|328351362|emb|CCA37761.1| TATA-binding protein-associated factor MOT1 [Pichia pastoris CBS
            7435]
          Length = 1937

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 25/186 (13%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLA-- 82
            ++K L L  G    DE          + +  + ++  +         ++       L   
Sbjct: 1670 SLKTLLLECGIGSSDENSEEGLGSSLRRQQ-QQLVTGSEGVISQHRALIFCQLKDMLDMV 1728

Query: 83   ---RLQKAFP-------QGRTLDKDPCTI-QEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130
                L+K  P        G T      +I +++NE   I LL       G GLNL  G +
Sbjct: 1729 ENDLLRKHMPSVTYMRLDGSTDPHSRQSIVRKFNEDPSIDLLLLTTKVGGLGLNLT-GAD 1787

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++F    W+     Q ++R       + G K+ V VY LI QNT++E ++   + K  I
Sbjct: 1788 TVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITQNTLEERIMGLQKFKMNI 1842

Query: 191  QDLLLN 196
               ++N
Sbjct: 1843 ASSVVN 1848


>gi|149642515|ref|XP_001505934.1| PREDICTED: similar to helicase, lymphoid-specific [Ornithorhynchus
           anatinus]
          Length = 823

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++       L  L                  +    
Sbjct: 580 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTMMLDILMDYCYLRSFSFSRLDGSMSYAAR 639

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N + ++ +      + G G+NL    + ++ +   W+ +   Q  +R      
Sbjct: 640 EENMHKFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC----- 693

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 694 HRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLII 732


>gi|121714457|ref|XP_001274839.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
           1]
 gi|119402993|gb|EAW13413.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
           1]
          Length = 1221

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L+K                  +     
Sbjct: 759 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVNSLSGFNHRRMDGTTPIQHRQA 818

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 819 MVDEFNNDPNLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 872

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 873 LGQKREVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 915


>gi|50557192|ref|XP_506004.1| YALI0F28831p [Yarrowia lipolytica]
 gi|49651874|emb|CAG78816.1| YALI0F28831p [Yarrowia lipolytica]
          Length = 920

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 28  KTVKC-LQLANGAVYYDEEKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARL 84
           +  +  LQ  +   Y  EE+ W  +   K+K L  +  I K N   +++   F   L  L
Sbjct: 723 ELNRLALQFPSIEKYALEEEPW--MDAAKVKKLAEMLPIMKENNDRVLIFSQFTQCLDIL 780

Query: 85  QKAF---------PQGRTLDKDPCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +              G+T  +    + +  + E  I +      + G G+NL    N ++
Sbjct: 781 ESVLNTLGIAFLRLDGQTPVEARQDMIDKYYEETDITVFLLSTKAGGFGINL-ACANTVI 839

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F L ++  + +Q  +R       + G  R V V  L+ + T++E +L+   TK  +   
Sbjct: 840 IFDLSFNPHDDKQAEDR-----AHRVGQTRDVRVIRLVCKGTVEEKILELNNTKLALDKS 894

Query: 194 L 194
           +
Sbjct: 895 V 895


>gi|312214448|emb|CBX94440.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1719

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K+  LE+++ K       +++   F   L  ++      +   +             
Sbjct: 1042 ASAKLSLLEILLPKLQERGHRVLIFSQFLDMLNIIEDFLDGMQLSYQRLDGTMGSLEKQK 1101

Query: 100  TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    PL        + G G+NL    + ++     W+  +  Q I R       
Sbjct: 1102 RIDQFNAPDSPLFAFLLSTRAGGVGINL-ATADTVIILDPDWNPHQDLQAIAR-----AH 1155

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K+ V    L  + +++E ++Q  R K  +  +++  L  + I
Sbjct: 1156 RIGQKKKVLCLQLTTRASVEEKIMQMGRKKMALDHVVVEQLDTDDI 1201


>gi|308499699|ref|XP_003112035.1| CRE-RAD-54 protein [Caenorhabditis remanei]
 gi|308268516|gb|EFP12469.1| CRE-RAD-54 protein [Caenorhabditis remanei]
          Length = 1096

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  RL  +      + +    +  +N+    I        + G GLNL  G N LV F  
Sbjct: 865 DFVRLDGSMS----IKQRSKIVDTFNDPSSTIFCFLLSSKAGGCGLNL-IGANRLVMFDP 919

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+     Q + R+      + G K+  F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 920 DWNPANDDQAMARVW-----RDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVS 973


>gi|240281984|gb|EER45487.1| chromatin remodeling complex ATPase chain ISW1 [Ajellomyces
           capsulatus H143]
          Length = 1051

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 438 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 497

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 498 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 555

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 556 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 614

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 615 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 668


>gi|190344615|gb|EDK36323.2| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +K   +    K++ L  +++K  +     ++       L  L++               
Sbjct: 210 PDKSLLQFDCGKLQKLAQLLQKLTSEGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 269

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +++     + +N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 270 TKIEERQVLTETFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 328

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 329 C-----HRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVVIQ 369


>gi|170593189|ref|XP_001901347.1| DNA excision repair protein ERCC-6 [Brugia malayi]
 gi|158591414|gb|EDP30027.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
          Length = 1103

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 32/220 (14%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVH---- 52
           K Y ++     CD +    ++AF       K       +  G   +++     +      
Sbjct: 499 KLYEEYLSSRECDRILSGKMDAFVGLITLRKLCNHPDLVTGGPNKFNDYDVTADEEMGFG 558

Query: 53  ----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
                 K++ L+ +++  K     +++       L  L+K   Q R           +  
Sbjct: 559 APCRSGKMQVLKALLKLWKRQGQKVLLFSQSRQMLTILEKFVIQERYEYLRMDGTTVVRS 618

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++E+N   KI +        G G+NL  G N +V F   W+     Q  ER     
Sbjct: 619 RQLLVEEFNKNNKIFIFLLTTRVGGLGINLT-GANRVVIFDPDWNPSTDIQARERAW--- 674

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +RAV +Y L+   TI+E +  R   K  + + +L
Sbjct: 675 --RIGQERAVTIYRLLTGGTIEEKIYHRQIFKVFLSNRIL 712


>gi|134114696|ref|XP_774056.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256686|gb|EAL19409.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1514

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            ++  K+  L++++ +  ++   +++       L  +           +        D  
Sbjct: 752 VMNSGKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVR 811

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I+ +N    P         + G G+NL    + ++ F   ++ +   Q + R     
Sbjct: 812 KKSIEHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQNDLQAMAR----- 865

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 866 AHRIGQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 915


>gi|68486386|ref|XP_712928.1| hypothetical protein CaO19.4502 [Candida albicans SC5314]
 gi|68486451|ref|XP_712896.1| hypothetical protein CaO19.11978 [Candida albicans SC5314]
 gi|46434315|gb|EAK93728.1| hypothetical protein CaO19.11978 [Candida albicans SC5314]
 gi|46434350|gb|EAK93762.1| hypothetical protein CaO19.4502 [Candida albicans SC5314]
          Length = 1915

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 68   AAPIIVAYHFNSDL-----ARLQKAFP-------QGRTLDKDPCTI-QEWNE-GKIPLLF 113
                ++       L       L+K  P        G T  +D  +I +++NE   I +L 
Sbjct: 1686 EHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLL 1745

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +
Sbjct: 1746 LTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITK 1799

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +T++E ++   + K  I   ++N
Sbjct: 1800 DTLEEKIMGLQKFKMNIASTIVN 1822


>gi|121699521|ref|XP_001268048.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119396190|gb|EAW06622.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1147

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEV-HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQG------ 91
            +Y +      +V    KI+ L  I+  +A+    IV   F S L +++    +       
Sbjct: 894  IYLNPGDEDDQVLPSTKIRHLMKILRGEADEHKFIVFSVFTSMLDKIEPFLKRAGIGFAR 953

Query: 92   -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 R   ++    +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 954  YDGSMRNDHREASLNKLRNNSATRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1012

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1013 AIDRV-----HRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1058


>gi|68472697|ref|XP_719667.1| hypothetical protein CaO19.9644 [Candida albicans SC5314]
 gi|68472956|ref|XP_719543.1| hypothetical protein CaO19.2097 [Candida albicans SC5314]
 gi|74680157|sp|Q5ACX1|RAD5_CANAL RecName: Full=DNA repair protein RAD5
 gi|46441365|gb|EAL00663.1| hypothetical protein CaO19.2097 [Candida albicans SC5314]
 gi|46441494|gb|EAL00791.1| hypothetical protein CaO19.9644 [Candida albicans SC5314]
          Length = 1084

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 26/159 (16%)

Query: 52   HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------------LD 95
               KI+AL    + +  ++  + +IV   F+S L  +Q                    ++
Sbjct: 907  SSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMN 966

Query: 96   KDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 ++ +N    +GK+ +L     + G GLNL    +       WW      Q I+RI
Sbjct: 967  DRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTT-ASRAYMMDPWWSPSIEDQAIDRI 1025

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G    V V   I +N+I+  +L+    K  I
Sbjct: 1026 -----HRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059


>gi|301619518|ref|XP_002939139.1| PREDICTED: TATA-binding protein-associated factor 172 [Xenopus
            (Silurana) tropicalis]
          Length = 1693

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            +K++  I+E+    P + +  +     RL    P G+   +     +  N+  I +L   
Sbjct: 1496 LKSMLDIVEQDLLKPHLPSVTYL----RLDGTIPAGQ---RHSIVSRFNNDPSIDVLLLT 1548

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI + T
Sbjct: 1549 THVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLITRGT 1602

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E ++   + K +I + +++
Sbjct: 1603 LEEKIMGLQKFKMSIANTVIS 1623


>gi|159472859|ref|XP_001694562.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276786|gb|EDP02557.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 856

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCT 100
             K+  L+ ++ K  A    +++   FN  L  ++        + R LD      K    
Sbjct: 642 SGKMLVLDRLLSKLKARGHRVVLFSQFNIMLDIIEDYLVARGHKYRRLDGSTNRIKRMID 701

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+    I +      + G G+NLQ   +  V F   W+ +   Q + R+      +
Sbjct: 702 IEQFNKPNSDIFIYILCTRAGGLGVNLQT-ADTCVLFDSDWNPQWDLQAMARV-----HR 755

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R V VY L+++ T+++ +  R   K  +  ++
Sbjct: 756 IGQTRPVHVYRLVSEGTVEDRIQARAEGKLYLDQMV 791


>gi|126273212|ref|XP_001374884.1| PREDICTED: similar to helicase, lymphoid-specific, [Monodelphis
           domestica]
          Length = 824

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  K     +++       L  L                  +  +    + ++N +
Sbjct: 593 MLPEL--KNRGHKVLLFSQMTMMLDILMDYCYLRNYSFSRLDGSMSYVEREENMHKFNTD 650

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ L      + G G+NL    + ++ +   W+ +   Q  +R       + G  + V 
Sbjct: 651 PEVFLFLVSTRAGGLGINLT-AADTVIIYDSDWNPQSDLQAQDRC-----HRIGQTKPVV 704

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 705 VYRLVTANTVDQKIVERAAAKRRLEKLII 733


>gi|325180152|emb|CCA14554.1| ATPdependent helicase putative [Albugo laibachii Nc14]
          Length = 945

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 25/201 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + + E Y D Q  ++     A+K ++ LQL   A+    + H+ +    K+K        
Sbjct: 709 RKELETYSDFQIHDLCVHYGANKELRNLQLPIEALLDSAKFHYLDTQLPKLKQ------- 761

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEG-KIPLLFA 114
                +++   +   L  L+              G T+ +     I E+N    I +   
Sbjct: 762 -EGHRVLIFSQWTKLLDLLEVLMKHKQYRFLRLDGSTMVETRQQLIDEYNSDQDIFVFLL 820

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++   L ++    +Q  +R       + G  R V +Y L+A+N
Sbjct: 821 STRAGGLGINLT-AADTVILHDLDFNPTNDEQACDRC-----HRIGQTRPVSIYKLVAEN 874

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T+D  + +    K  +   +L
Sbjct: 875 TVDHDIYKLGEVKRQLNHAVL 895


>gi|317034915|ref|XP_001400735.2| DNA repair protein Rhp26/Rad26 [Aspergillus niger CBS 513.88]
          Length = 1214

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------ 86
           L N  +      +       K++ ++ ++E  K      ++       L  L+K      
Sbjct: 739 LQNHKLMSSTTGYGSGSKSGKMQVVKSLLELWKDTGHKTLLFTQHRIMLDILEKFVNSLS 798

Query: 87  -----AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +      + E+N    + +        G G+NL  G + ++ +   W+
Sbjct: 799 GFSYRRMDGTTPIQHRQAMVDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWN 857

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALK 199
                Q  ER       + G KR V VY L+   TI+E +  R   K  + + +L +  +
Sbjct: 858 PSTDVQARERAW-----RLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQ 912

Query: 200 KETIHV 205
           ++T  +
Sbjct: 913 RQTFQL 918


>gi|294955606|ref|XP_002788589.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239904130|gb|EER20385.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1363

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%)

Query: 52   HDEKIKALEV----IIEKANAAPIIVAYHFNSDLAR--------------LQKAFPQGRT 93
               KI AL      + E+  +A  +V   F+  L                L    P  + 
Sbjct: 1189 SSAKIDALLDEVRKMKERDPSAKGLVFSQFSRMLELVDFKLRREGISCLVLHGGIPMAQ- 1247

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              +    +    + +  LL     + G GLNLQ   + +     WW+    QQ I+R   
Sbjct: 1248 --RSNILLSFRQDPEFTLLLISLKAGGEGLNLQ-AASCVFLLDPWWNPAYEQQAIQR--- 1301

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G  +AV     I ++T++E +L     K  + D  +   ++  + 
Sbjct: 1302 --AHRLGQTKAVNAVRFITKDTVEERILALQEKKQLVFDGTVGGNEQGALQ 1350


>gi|322787688|gb|EFZ13700.1| hypothetical protein SINV_08345 [Solenopsis invicta]
          Length = 1008

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 361 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 420

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K     + +++       L  L         Q    
Sbjct: 421 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 480

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 481 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 539

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 540 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 584


>gi|224015246|ref|XP_002297281.1| helicase-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220968075|gb|EED86431.1| helicase-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 19/149 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
           L  ++       I++   +   L  +                   +++    I  + E  
Sbjct: 404 LPELV--GKGHRILLFSQWTRVLDLMHNLLESLDMKFMRLDGSTAVNERQEMIDTFTEDS 461

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            IP+      + G GLNL    ++ +   L ++        +R    R  + G K+ V +
Sbjct: 462 SIPIFLLSTRAGGMGLNLT-AADVCILHDLDFN-----PFNDRQAEDRCHRIGQKKPVTI 515

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++ + T+DE +      K  + + +++
Sbjct: 516 LKMVTRGTVDEAIYSLQERKERMNEAIMD 544


>gi|189189128|ref|XP_001930903.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972509|gb|EDU40008.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1570

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARL 84
           ++ + E    +    K + L+ +I                 A+   +++       L  L
Sbjct: 726 LFPNAENKLVKPGSSKEETLKALITSSGKMMLLDRLLGKLKADGHRVLIFSQMVHMLDIL 785

Query: 85  Q----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNIL 132
                      +              I  +N    +         + G G+NL    + +
Sbjct: 786 TDYLKLRNYSFQRLDGTVPAADRKIAIDHFNAPGSEDYCFLLSTRAGGLGINLMT-ADTV 844

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           V F   W+ +   Q + R       + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 845 VIFDSDWNPQADLQAMAR-----AHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 897


>gi|164655795|ref|XP_001729026.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
 gi|159102915|gb|EDP41812.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
          Length = 1053

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 39/232 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
             QR+ Y  L  ++IEA N A              +QL    N    +D           
Sbjct: 417 DMQRKWYKSLLEKDIEAVNGALSKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 476

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                +  K+  L+ ++ K     + +++    +  L  L+                   
Sbjct: 477 EHLVYNSGKMDILDKLLRKMKERGSRVLIFCQMSRMLDILEDYCLFREYTYCRIDGSSVH 536

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       L      + G G+NL    +++V F   W+ +   Q ++R  
Sbjct: 537 EDRIAAIDEYNRPDSDKFLFLLTTRAGGLGINLT-SADVVVLFDSDWNPQADLQAMDR-- 593

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G K+ VFVY  +  ++I+E +L+R   K  +  L++   +  +  
Sbjct: 594 ---AHRIGQKKQVFVYRFVTDHSIEERILERAAQKLRLDQLVIQQGRSSSAQ 642


>gi|146422206|ref|XP_001487044.1| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +K   +    K++ L  +++K  +     ++       L  L++               
Sbjct: 210 PDKSLLQFDCGKLQKLAQLLQKLTSEGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGA 269

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +++     + +N + KIP+      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 270 TKIEERQVLTETFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 328

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 329 C-----HRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVVIQ 369


>gi|297687009|ref|XP_002821019.1| PREDICTED: TATA-binding protein-associated factor 172-like [Pongo
            abelii]
          Length = 1849

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1701

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1702 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1755

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1756 TRGTLEEKIMGLQKFKMNIANTVIS 1780


>gi|302509748|ref|XP_003016834.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
 gi|291180404|gb|EFE36189.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
          Length = 1220

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 731 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQS 790

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 791 MVDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 844

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 845 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 887


>gi|195501119|ref|XP_002097666.1| GE24355 [Drosophila yakuba]
 gi|194183767|gb|EDW97378.1| GE24355 [Drosophila yakuba]
          Length = 1925

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 34/188 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR 83
             QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  
Sbjct: 1676 SQLALSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1730

Query: 84   -----LQKAFP-------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
                 L++  P        G         I   +N +  I +L       G GLNL  G 
Sbjct: 1731 VEHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-GA 1789

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K  
Sbjct: 1790 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKIL 1844

Query: 190  IQDLLLNA 197
              + +++A
Sbjct: 1845 TANTVVSA 1852


>gi|150866161|ref|XP_001385659.2| snf family helicase [Scheffersomyces stipitis CBS 6054]
 gi|149387417|gb|ABN67630.2| snf family helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1557

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  +++   A     ++       L  L++             G 
Sbjct: 1273 PDKSLLQYDCGKLQKLAKLLQNLTAGGHRALIFTQMTKVLDILEQFLNIHGYRYSRLDGA 1332

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + +++N + KI +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1333 TKIEDRQLLTEKFNRDPKISVFILSTRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1391

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 1392 C-----HRIGQSRDVHIYRFVSEYTIESNILKKANQKRQLDNVVIQ 1432


>gi|58271342|ref|XP_572827.1| transcription regulator [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229086|gb|AAW45520.1| transcription regulator, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1519

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            ++  K+  L++++ +  ++   +++       L  +           +        D  
Sbjct: 757 VMNSGKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVR 816

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I+ +N    P         + G G+NL    + ++ F   ++ +   Q + R     
Sbjct: 817 KKSIEHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQNDLQAMAR----- 870

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 871 AHRIGQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 920


>gi|56118945|ref|NP_001007993.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus (Silurana)
           tropicalis]
 gi|51704071|gb|AAH80870.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus (Silurana)
           tropicalis]
          Length = 1049

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NS+ KT K       +QL       Y  +     
Sbjct: 406 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 465

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ +     + +++       L  L+             
Sbjct: 466 PPYTTDMHLVTNSGKMVVLDKLLPRLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 525

Query: 90  QGRTLDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 526 DGQTPHEERQDSIIAYNAPGSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 585 AMDR-----AHRIGQTKTVRVFRYITDNTVEERIVERAEMKLRLDSIVIQ 629


>gi|302652597|ref|XP_003018145.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
 gi|291181757|gb|EFE37500.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
          Length = 1240

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 751 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQS 810

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 811 MVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 864

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 865 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 907


>gi|226289757|gb|EEH45241.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1236

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L+           +       +     
Sbjct: 765 SGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQS 824

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N   +I +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 825 LVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 878

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 879 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 921


>gi|213408777|ref|XP_002175159.1| chromodomain helicase hrp1 [Schizosaccharomyces japonicus yFS275]
 gi|212003206|gb|EEB08866.1| chromodomain helicase hrp1 [Schizosaccharomyces japonicus yFS275]
          Length = 1354

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 26/172 (15%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
               K LQ         ++ H   +  + +K L ++ E  N    +  Y+F     RL  
Sbjct: 651 VLLDKLLQ------RLKQDGHRVLIFTQMVKVLNILAEYMN----LRGYNF----QRLDG 696

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             P           I  +N    P  +      + G G+NL    + ++ F   W+ +  
Sbjct: 697 TIPAPV----RRLAIDHFNSPDSPDFVFLLSTRAGGLGINLST-ADTVIIFDSDWNPQAD 751

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q + R       + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 752 LQAMAR-----AHRIGQKNHVSVYRFLSKDTVEEDILERARRKMILEYAIIS 798


>gi|241951336|ref|XP_002418390.1| TATA-binding protein-associated factor, putative; TBP-associated
            factor, putative; helicase, putative; modifier of
            transcription, putative [Candida dubliniensis CD36]
 gi|223641729|emb|CAX43690.1| TATA-binding protein-associated factor, putative [Candida
            dubliniensis CD36]
          Length = 1918

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 68   AAPIIVAYHFNSDL-----ARLQKAFP-------QGRTLDKDPCTI-QEWNE-GKIPLLF 113
                ++       L       L+K  P        G T  +D  +I +++NE   I +L 
Sbjct: 1686 EHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLL 1745

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +
Sbjct: 1746 LTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITK 1799

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +T++E ++   + K  I   ++N
Sbjct: 1800 DTLEEKIMGLQKFKMNIASTIVN 1822


>gi|255935291|ref|XP_002558672.1| Pc13g02310 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583292|emb|CAP91300.1| Pc13g02310 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1908

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            KQY++   + +   +  NI   + A K      L       D         + ++     
Sbjct: 1633 KQYNEV--QSFLSAKRSNIRDVSHAPKLNALKDL-----LVDCGIGLDHTAEGELDTGAS 1685

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                  G    K    +  +N + 
Sbjct: 1686 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQYLRLDGGVEATKRQDIVNRFNTDP 1742

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1743 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1796

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1797 YRLITRGTLEEKILNLQRFKIDVASTVVN 1825


>gi|301105731|ref|XP_002901949.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262099287|gb|EEY57339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 744

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 89/240 (37%), Gaps = 54/240 (22%)

Query: 2   KQYHKFQRELYCDLQGEN-------IEAFNSASKTVKCLQL---------------ANGA 39
           ++Y++  R+       E         +AFN+ +   K +QL               A G 
Sbjct: 420 REYYQMIRDGTLAKAMEEKYGKFQAQKAFNTTTLRNKMMQLRKCCLHPYLFDEPLTAGGD 479

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF--------- 88
           V  DE          K+  L+ ++ +       +++       +  L+  F         
Sbjct: 480 VVTDE---RMIETSGKLSILDRMLRQLKRKGHKVLIFSQMTRMMDILEDYFRMREYSYCR 536

Query: 89  PQGRTLDKDPCT-IQEWN-----------EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             G T   D    ++++N           +  + +      + G G+NL    + ++F+ 
Sbjct: 537 LDGSTKLMDRVDQMEKFNKVSAGSGSANDDDNVFVFMLSTRAGGLGINL-IAADTVIFYD 595

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ ++  Q ++R       + G K  + VY L+ +N+ ++ + QR   K  ++ +++ 
Sbjct: 596 SDWNPQQDNQAMDRC-----HRIGQKNEIIVYRLVTENSFEDRMTQRAFEKRKLERVVIQ 650


>gi|27477070|ref|NP_003963.1| TATA-binding protein-associated factor 172 [Homo sapiens]
 gi|12643543|sp|O14981|BTAF1_HUMAN RecName: Full=TATA-binding protein-associated factor 172; AltName:
            Full=ATP-dependent helicase BTAF1; AltName: Full=B-TFIID
            transcription factor-associated 170 kDa subunit; AltName:
            Full=TAF(II)170; AltName: Full=TBP-associated factor 172;
            Short=TAF-172
 gi|2920587|gb|AAC04573.1| TBP-associated factor 172 [Homo sapiens]
 gi|2995136|emb|CAA04475.1| TBP associated factor [Homo sapiens]
 gi|55959634|emb|CAI14103.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae) [Homo sapiens]
 gi|85567637|gb|AAI12202.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa [Homo sapiens]
 gi|119570487|gb|EAW50102.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae), isoform CRA_a [Homo
            sapiens]
 gi|119570488|gb|EAW50103.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae), isoform CRA_a [Homo
            sapiens]
          Length = 1849

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1701

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1702 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1755

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1756 TRGTLEEKIMGLQKFKMNIANTVIS 1780


>gi|303279062|ref|XP_003058824.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459984|gb|EEH57279.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 828

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 31/166 (18%)

Query: 52  HDEKIKALEVIIEKA----NAAPIIVAYHFNSDLA--------------RLQKAFPQGRT 93
              K+ AL   +         A  +V   F + L               R+  A P    
Sbjct: 668 PSAKVTALVDRLRADLGGEPGAKAVVFSQFVAFLDIARDACAAAGFKTCRITGAVPVAE- 726

Query: 94  LDKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  I+ +  N    P ++F    + G G+NL    + +     WW+    +Q ++R
Sbjct: 727 ---RERVIRSFQSNASDAPDVVFVSLKAGGVGINLT-AASKVYMLDPWWNPAVEEQAMDR 782

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G  + V V    A +TI+E +L+  R K  +      
Sbjct: 783 V-----HRLGQTKDVTVVRFAATDTIEEKMLELQRRKRELARAAFE 823


>gi|147765952|emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLF 113
           K     +++       L  L+          +       +      I E+N+   + +  
Sbjct: 776 KEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFI 835

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ +   W+     Q  ER       + G  R V VY LI +
Sbjct: 836 LTTKVGGLGTNLT-GANRVIIYDPDWNPSTDMQARERAW-----RIGQTRDVTVYRLITR 889

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V QR   K  + + +L
Sbjct: 890 GTIEEKVYQRQIYKHFLTNKIL 911


>gi|15224228|ref|NP_179466.1| CHR8 (chromatin remodeling 8); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein
           [Arabidopsis thaliana]
 gi|330251711|gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana]
          Length = 1187

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +  +++  K     +++       L  L+          +       + +    
Sbjct: 726 SGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMAL 785

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N    + +        G G NL  G N ++ F   W+     Q  ER       + 
Sbjct: 786 IDEFNNSEDMFVFVLTTKVGGLGTNLT-GANRVIIFDPDWNPSNDMQARERAW-----RI 839

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G K+ V VY LI + TI+E V  R   K  + + +L
Sbjct: 840 GQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 875


>gi|327351572|gb|EGE80429.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1542

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 1006 ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRLDGSMSSLQKQK 1065

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1066 QIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1119

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1120 RIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|261197277|ref|XP_002625041.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis
            SLH14081]
 gi|239595671|gb|EEQ78252.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis
            SLH14081]
          Length = 1542

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 1006 ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRLDGSMSSLQKQK 1065

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1066 QIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1119

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1120 RIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|115446443|ref|NP_001047001.1| Os02g0527100 [Oryza sativa Japonica Group]
 gi|49388292|dbj|BAD25407.1| putative DNA repair protein rad8 [Oryza sativa Japonica Group]
 gi|113536532|dbj|BAF08915.1| Os02g0527100 [Oryza sativa Japonica Group]
          Length = 810

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
            D EK+W E    KI  L   +E  + + A  I+   + + L  LQ       F   R  
Sbjct: 634 IDVEKNWVE--SSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLD 691

Query: 94  ----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L +    I+E++E K I +L     + G G+NL    N  V    WW+    +Q I
Sbjct: 692 GTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAI 750

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  ++V +   I + T++E +      K 
Sbjct: 751 MRI-----HRIGQTKSVSIKRFIVKGTVEERMEAVQARKQ 785


>gi|322790023|gb|EFZ15099.1| hypothetical protein SINV_15320 [Solenopsis invicta]
          Length = 3700

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+++L+ ++ K  +    +++       L  L+                  +D+    ++
Sbjct: 1554 KLQSLDCLLRKLKSGNHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTRVDQRQILME 1613

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1614 RFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1667

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1668 TRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1703


>gi|330916188|ref|XP_003297327.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
 gi|311330071|gb|EFQ94584.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
          Length = 1580

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLARL 84
           ++ + E    +    K + L+ +I                 A+   +++       L  L
Sbjct: 736 LFPNAENKLVKPGSSKEETLKALITSSGKMMLLDRLLGKLKADGHRVLIFSQMVHMLDIL 795

Query: 85  Q----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNIL 132
                      +              I  +N    +         + G G+NL    + +
Sbjct: 796 TDYLKLRNYSFQRLDGTVPAADRKIAIDHFNAPGSEDYCFLLSTRAGGLGINLMT-ADTV 854

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           V F   W+ +   Q + R       + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 855 VIFDSDWNPQADLQAMAR-----AHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 907


>gi|291235335|ref|XP_002737602.1| PREDICTED: DNA excision repair protein ERCC-6-like [Saccoglossus
           kowalevskii]
          Length = 2298

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 26/197 (13%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIE--K 65
             +L+GE  + +   S T    Q+++     D   +           K+  L  ++E  +
Sbjct: 433 MLNLEGEECDPYGDYSDTA--SQISSSECAADNIDNVSISALVEESGKLVVLISLLENLR 490

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN-EGKIPLLF 113
                 +V       L  +QK   +            R L+     I ++       +  
Sbjct: 491 DEGHRTLVFSQSKKMLDIMQKVLEEKNFKLIRIDGSIRKLEDREKLINKFQRNSSYSVFL 550

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G GL L    + +V F   W+     Q ++R       + G K+ V +Y LI  
Sbjct: 551 LTTGVGGIGLTLT-AADRVVIFDPSWNPATDSQAVDR-----AYRLGQKKTVVIYRLITC 604

Query: 174 NTIDELVLQRLRTKSTI 190
            +++E + +R   K +I
Sbjct: 605 GSVEEKIYRRQIFKDSI 621


>gi|19114237|ref|NP_593325.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe 972h-]
 gi|74676241|sp|P87114|FFT1_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase fft1; AltName:
           Full=Fun thirty-related protein 1
 gi|2094863|emb|CAB08602.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe]
          Length = 944

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            K W  +   K+K L  +++K+     I++   F   L  L+                  
Sbjct: 758 GKPW--MDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTP 815

Query: 94  LDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++     I +++  +   +      S G G+NL    NI++ F   ++  +  Q  +R  
Sbjct: 816 VETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTC-ANIVILFDCSFNPFDDMQAEDR-- 872

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  R V VY LI +NTI+E + +   TK T++  L
Sbjct: 873 ---AHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSL 911


>gi|297301486|ref|XP_002805795.1| PREDICTED: TATA-binding protein-associated factor 172-like [Macaca
            mulatta]
          Length = 1811

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1607 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1663

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1664 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1717

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1718 TRGTLEEKIMGLQKFKMNIANTVIS 1742


>gi|296414553|ref|XP_002836963.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632810|emb|CAZ81154.1| unnamed protein product [Tuber melanosporum]
          Length = 1645

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++       L  ++                  G    K    + ++N +  I +L  
Sbjct: 1431 HRALIFCQLKEMLDIVENDVLKKLLPSVSYLRMDGGTEARKRQDIVTKFNGDPSIDVLLL 1490

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY L+ + 
Sbjct: 1491 TTHVGGLGLNLT-GADTVIFVEHDWNPQKDMQAMDR-----AHRIGQKKVVNVYRLVTRG 1544

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   R K  +   ++N
Sbjct: 1545 TLEEKIMSLQRFKLDVASTVVN 1566


>gi|296414511|ref|XP_002836943.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632788|emb|CAZ81134.1| unnamed protein product [Tuber melanosporum]
          Length = 1444

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
              K+  L+ ++ K  A+   ++V       L  L           +             
Sbjct: 736 SSGKMVLLDQLLTKLKADNHRVLVFSQMVHMLDILADYLNLKGFSFQRLDGTIAAGPRRI 795

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N  + P         + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 796 AIDHFNAPESPDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR-----AH 849

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++TI+E VL+R R K  ++ L+++
Sbjct: 850 RIGQKAHVMVYRLVSKDTIEEEVLERARNKMILEHLVIS 888


>gi|225681199|gb|EEH19483.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 1083

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP-----QGRTLDK 96
           DE +    +   KI+ L  I++K +     IV   F S L +++           R    
Sbjct: 825 DEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKGANIGYARYDGA 884

Query: 97  DPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+R
Sbjct: 885 MRNDMRENSLDRLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDR 943

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      +      V VY L  +NT++E ++     K  + +  +  
Sbjct: 944 V-----HRLNQTIDVKVYKLTIRNTVEERIVDLQEHKRELANATIEG 985


>gi|322710752|gb|EFZ02326.1| DNA repair protein Rhp26/Rad26, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 1162

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDPC 99
             K++  + +++K    N    ++       L  ++K             G T +D+   
Sbjct: 728 SAKLELTKDLLQKVMIPNGHKTLLFSQGKLMLNIIEKCMRECNISYLRLDGETPVDQRQP 787

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N    I +      + G G NL  G + ++ F   W+     Q  ER       +
Sbjct: 788 MIDRFNTDLSIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPSTDLQARERAW-----R 841

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 842 LGQNKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 884


>gi|296220759|ref|XP_002756460.1| PREDICTED: TATA-binding protein-associated factor 172 [Callithrix
            jacchus]
          Length = 1849

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1701

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1702 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1755

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1756 TRGTLEEKIMGLQKFKMNIANTVIS 1780


>gi|300793896|ref|NP_001178846.1| TATA-binding protein-associated factor 172 [Rattus norvegicus]
 gi|293344714|ref|XP_001080159.2| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, (Mot1 homolog, S. cerevisiae) [Rattus
            norvegicus]
          Length = 1855

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1651 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1707

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1708 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1761

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1762 TRGTLEEKIMGLQKFKMNIANTVIS 1786


>gi|281345313|gb|EFB20897.1| hypothetical protein PANDA_004205 [Ailuropoda melanoleuca]
          Length = 1845

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1641 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1697

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1698 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1751

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1752 TRGTLEEKIMGLQKFKMNIANTVIS 1776


>gi|215693288|dbj|BAG88670.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 607

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRT- 93
            D EK+W E    KI  L   +E  + + A  I+   + + L  LQ       F   R  
Sbjct: 431 IDVEKNWVE--SSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLD 488

Query: 94  ----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L +    I+E++E K I +L     + G G+NL    N  V    WW+    +Q I
Sbjct: 489 GTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAI 547

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  ++V +   I + T++E +      K 
Sbjct: 548 MRI-----HRIGQTKSVSIKRFIVKGTVEERMEAVQARKQ 582


>gi|149062768|gb|EDM13191.1| similar to TBP-associated factor 172 (TAF-172) (TAF(II)170)
            (predicted) [Rattus norvegicus]
          Length = 1372

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1168 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1224

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1225 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1278

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1279 TRGTLEEKIMGLQKFKMNIANTVIS 1303


>gi|73998226|ref|XP_543929.2| PREDICTED: similar to TATA-binding-protein-associated factor 172
            (TBP-associated factor 172) (TAF-172) (TAF(II)170)
            (B-TFIID transcription factor-associated 170 kDa subunit)
            [Canis familiaris]
          Length = 1849

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1701

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1702 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1755

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1756 TRGTLEEKIMGLQKFKMNIANTVIS 1780


>gi|83286649|ref|XP_730253.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489925|gb|EAA21818.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 1350

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 37/221 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H  
Sbjct: 485 KLQKKLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI 544

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDP 98
           E    K+  L+ ++ +     + +++       L  +         +     G T+  + 
Sbjct: 545 E-TSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRIDGSTVGDER 603

Query: 99  CT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 604 QIRINKFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 657

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V VY  + QN+++E +++R   K  +  L++ 
Sbjct: 658 AHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQ 698


>gi|225681829|gb|EEH20113.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1000

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
             +  L   I    +  +++  ++ S L  L K                   K    + +
Sbjct: 670 RVLDQLLHNIRHTTSEKVVLISNYTSTLDLLGKLLTSLSLPFLRLDGSTPAAKRQALVDD 729

Query: 104 WNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N      +        + G GLNL  G + LV F + W+     Q + RI      + G
Sbjct: 730 FNRSSPTSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDG 783

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y  + +  ++E + QR  TK  + D +++
Sbjct: 784 QKRHCRIYRFLLKGALEEKIWQRQVTKIGLADSVMD 819


>gi|121701385|ref|XP_001268957.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus clavatus
           NRRL 1]
 gi|119397100|gb|EAW07531.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus clavatus
           NRRL 1]
          Length = 892

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                    K+  L+ ++         I++   F + L  LQ               G  
Sbjct: 642 DETLVTASGKMLLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAI 701

Query: 94  LDKDPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              D    I+ +N      +      + G G+NL    + ++ F   W+ ++  Q     
Sbjct: 702 SQTDRQAQIKAFNSDSHFKIFLLSTRAGGQGINL-VAADTVILFDSDWNPQQDLQA---- 756

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  R V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 757 -QDRAHRIGQTRPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 803


>gi|321445102|gb|EFX60594.1| hypothetical protein DAPPUDRAFT_308061 [Daphnia pulex]
          Length = 190

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 18/147 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE--GKIPLLF 113
           +     +V   + S L    + F + R           +      ++++N      P++ 
Sbjct: 17  SQNQKAVVVSQWTSMLDLFAQHFRRMRIRCHLIAGSVAIKHRTEIVEDFNGNPDGAPVIL 76

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL  GGN +    + W+ +   Q  +R+      + G  + V V+ +I Q
Sbjct: 77  LSLGAGGVGLNL-IGGNHIFIADMHWNPQLEAQACDRV-----YRVGQTKDVHVHRMITQ 130

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKK 200
            T++E +LQ  + K  + + +L    K
Sbjct: 131 GTVEERILQLQQEKLAMANGILTGAAK 157


>gi|307191525|gb|EFN75028.1| Chromatin-remodeling complex ATPase chain Iswi [Camponotus
           floridanus]
          Length = 1010

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 362 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 421

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K     + +++       L  L         Q    
Sbjct: 422 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 481

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 482 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 540

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 541 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 585


>gi|301761472|ref|XP_002916159.1| PREDICTED: TATA-binding protein-associated factor 172-like
            [Ailuropoda melanoleuca]
          Length = 1865

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1661 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1717

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1718 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1771

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1772 TRGTLEEKIMGLQKFKMNIANTVIS 1796


>gi|239606660|gb|EEQ83647.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis ER-3]
          Length = 1542

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 1006 ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRLDGSMSSLQKQK 1065

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1066 QIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1119

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1120 RIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|195339573|ref|XP_002036392.1| GM12170 [Drosophila sechellia]
 gi|194130272|gb|EDW52315.1| GM12170 [Drosophila sechellia]
          Length = 611

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPC 99
              K + L+ ++ K       +++   F   L       R++K           ++    
Sbjct: 417 DSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQD 476

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N    I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 477 LITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDFNPYNDKQAEDRC-----HR 530

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G +R V +Y LI+++TI+E +L     K  ++  + +  K E 
Sbjct: 531 MGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 574


>gi|134081405|emb|CAK46446.1| unnamed protein product [Aspergillus niger]
          Length = 1223

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------ 86
           L N  +      +       K++ ++ ++E  K      ++       L  L+K      
Sbjct: 748 LQNHKLMSSTTGYGSGSKSGKMQVVKSLLELWKDTGHKTLLFTQHRIMLDILEKFVNSLS 807

Query: 87  -----AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +      + E+N    + +        G G+NL  G + ++ +   W+
Sbjct: 808 GFSYRRMDGTTPIQHRQAMVDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWN 866

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALK 199
                Q  ER       + G KR V VY L+   TI+E +  R   K  + + +L +  +
Sbjct: 867 PSTDVQARERAW-----RLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQ 921

Query: 200 KETIHV 205
           ++T  +
Sbjct: 922 RQTFQL 927


>gi|328773251|gb|EGF83288.1| hypothetical protein BATDEDRAFT_84829 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 825

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 17/146 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTI 101
           DE ++ L    + +N +  IV   F S L  +Q A  +            +  +++    
Sbjct: 656 DEVVRILAENQKNSNVSKTIVFSQFTSMLNVIQNALDETDILYCRYDGGMKRKEREQTLF 715

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +  KI ++         G+NL    N ++    WW+    +Q I R+      + G 
Sbjct: 716 HFKSSEKINVMLISTKCGAAGINLTC-ANFVILVDPWWNPMMEEQAIGRV-----HRIGQ 769

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK 187
           +  V V  L+ ++TI+E V+++ + K
Sbjct: 770 RNPVHVVRLVMKDTIEEKVMEKQKQK 795


>gi|322695761|gb|EFY87564.1| DNA repair and recombination protein RAD5B [Metarhizium acridum CQMa
            102]
          Length = 1030

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 49   KEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
                  K +A+  I++     + + +++   + S L  +Q                    
Sbjct: 853  ITTQSSKTEAMMQILQATLNKHGSKVVIFSQWTSFLNIVQNQLDGAGIKYSRIDGSMNTE 912

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +D       N+ +  ++ A  A C  GLNL    + ++    WW      Q I+R+   
Sbjct: 913  KRDRAVQALDNDAETRVMLASLAVCSVGLNL-VSADTVILSDSWWAPAIEDQAIDRV--- 968

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + G  R   V+ LI + +++E VL   + K  +        +++  H 
Sbjct: 969  --HRLGQTRKTTVWRLIVEGSVEERVLDIQKEKRDLVTKAFQEKERKGKHT 1017


>gi|190348672|gb|EDK41171.2| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYC-----DLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE- 54
           K Y +  +         D  G+ I   N+ ++ ++  ++ N   VY + E       D  
Sbjct: 244 KLYQQMLKYNLLFSSNPDGDGKPIAIKNTNNQIMQLRKICNHPFVYEEVENMINPTADTN 303

Query: 55  --------KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTL- 94
                   K + L+ I+ K  A    +++ +   S          L  L+     G T  
Sbjct: 304 DEIWRVAGKFELLDRILPKLKATGHRVLIFFQMTSIMNIMEDFLRLRDLKYMRLDGATKA 363

Query: 95  DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     ++ +NE             + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 364 DDRTGLLKLFNEENSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA----- 417

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 418 QDRAHRIGQKNEVRIIRLITEDSVEEMILERAHAKLEIDGKVIQAGK 464


>gi|302845062|ref|XP_002954070.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
 gi|300260569|gb|EFJ44787.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
          Length = 520

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG 107
            L V+  + +   ++V  ++ S L    +                T++K    ++ +N+ 
Sbjct: 379 MLHVLYTETHDRIVLV-SNYTSSLDLFAQLCRERGYPFVRLDGTTTINKRQKLVKVFNDP 437

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +         + G GLNL  G N LV F   W+    QQ   R+      + G ++ V
Sbjct: 438 AERQFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDQQAAARVW-----RDGQRKRV 491

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           FVY  ++  +I+E V QR  +K  ++ L+
Sbjct: 492 FVYRFLSTGSIEEKVYQRQLSKEGLKQLV 520


>gi|209875245|ref|XP_002139065.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209554671|gb|EEA04716.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1085

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPII 72
             +  E   S+    K +Q++N              H  K K L  I++   +     ++
Sbjct: 638 DEDEDENEYSSELYFKKIQISN----------VNPSHSGKYKTLLSILKLWREKKKNRVL 687

Query: 73  VAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEW-------NEGKIPLLFAHP 116
           +       L  L K               TLD     +  +       N+  I L     
Sbjct: 688 IFTQGVRILNLLVKMLQRDLNLILDKDILTLDGSTPVVSRFSLVERFNNDSSIFLFILTS 747

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GLN+  G N ++ +  WW+     Q  ER       + G  + V VY LI ++T+
Sbjct: 748 RVGGVGLNI-MGANRIILYDPWWNPMTDAQAKERCW-----RIGQDKEVIVYRLITKDTV 801

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           +E + QR   K  I + +L   K
Sbjct: 802 EEKIYQRQLFKQFIANQILQDAK 824


>gi|328856433|gb|EGG05554.1| hypothetical protein MELLADRAFT_87820 [Melampsora larici-populina
           98AG31]
          Length = 593

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 28/178 (15%)

Query: 48  WKEVHDEKIK----ALEV---IIEKANAAPIIVAYHFNSDLARLQKA---------FPQG 91
           W   +D K+     AL     I+       II+  +F S L  ++              G
Sbjct: 260 WVTRNDIKLSGKMIALASFLKILHAKTDEKIILVSNFTSTLDVIEAHCRSQNYSLCRLDG 319

Query: 92  RTLDKDPCTI-QEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +T       I Q +N        +      S G GLNL  G + L+ F   W+     Q 
Sbjct: 320 KTPQTKRDDIVQTFNRMTARSQFVFLLSSKSGGVGLNL-IGASRLILFDSDWNPATDLQA 378

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           + RI      + G K+A  +Y  +A  TIDE + QR  TK+ +   L+    + +E +
Sbjct: 379 MARIW-----RQGQKKACHIYRFLATGTIDECIFQRQVTKTGLATDLIKDAGVSREVL 431


>gi|316974135|gb|EFV57661.1| chromatin-remodeling complex ATPase chain Iswi [Trichinella
           spiralis]
          Length = 1075

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 84/217 (38%), Gaps = 37/217 (17%)

Query: 11  LYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKHWKEVHDEKIKAL 59
           +Y  +  ++I+  N A K  K       +QL    N    +D  E           +   
Sbjct: 432 MYTKILMKDIDIVNGAGKLEKARLLNILMQLRKCCNHPYLFDGAEPGPPFTTDQHLVDNC 491

Query: 60  --EVIIEKA------NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-I 101
              V+++K         + +++    +  L  L+              G+T  ++    I
Sbjct: 492 GKMVLVDKLLPKLKEQGSRVLIFSQMSRMLDILEDYCLWKQYPYCRLDGQTPHQERQASI 551

Query: 102 QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N    +  +      + G G+NL    +I++ +   W+ +   Q ++R       + 
Sbjct: 552 DAFNAPNSEKFIFMLTTRAGGLGINL-ATADIVILYDSDWNPQMDLQAMDR-----AHRI 605

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+ V V+ LI +NT++E +++R   K  +  +++ 
Sbjct: 606 GQKKTVRVFRLITENTVEERIVERAEIKLRLDTVVIQ 642


>gi|119391227|dbj|BAF41982.1| TBP-associated factor 170 [Mus musculus]
          Length = 1848

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1644 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1700

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1701 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1754

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1755 TRGTLEEKIMGLQKFKMNIANTVIS 1779


>gi|123858774|ref|NP_001074175.1| TATA-binding protein-associated factor 172 [Mus musculus]
          Length = 1848

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1644 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1700

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1701 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1754

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1755 TRGTLEEKIMGLQKFKMNIANTVIS 1779


>gi|281212152|gb|EFA86312.1| hypothetical protein PPL_00102 [Polysphondylium pallidum PN500]
          Length = 2033

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQ 102
            K   L+ I+ K  A+   +++       +  L++ F           G T  D+    + 
Sbjct: 1343 KFDLLDKILPKLKASGHRVLIFSQMTHLIDILEQFFYYKGYKYLRLDGSTKSDERGPLLN 1402

Query: 103  EWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G GLNLQ   + ++ F   W+ +   Q        R  + G
Sbjct: 1403 LFNAENSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDLQA-----QDRAHRIG 1456

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L+  N+++E ++ R   K  +   ++ A
Sbjct: 1457 QKQTVKVLRLVTANSVEERIIARANFKKELDRKIIQA 1493


>gi|255715511|ref|XP_002554037.1| KLTH0E12870p [Lachancea thermotolerans]
 gi|238935419|emb|CAR23600.1| KLTH0E12870p [Lachancea thermotolerans]
          Length = 1880

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---- 85
            +K L L  G    D +K  K      + + E +I +      ++       L  ++    
Sbjct: 1632 LKNLLLECGIGIQDVDKKSKTY----LPSTESVISQ---HRALIFCQLKDMLDMVENDLF 1684

Query: 86   --------KAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G    +D    ++++NE   I  L       G GLNL  G + ++F 
Sbjct: 1685 KKYMPSVTYMRLDGSVESRDRQAVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFI 1743

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   ++
Sbjct: 1744 EHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRIITRGTLEEKIMGLQKFKMNIASTVI 1798

Query: 196  N 196
            N
Sbjct: 1799 N 1799


>gi|260945000|ref|XP_002616798.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
 gi|238850447|gb|EEQ39911.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
          Length = 1259

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 20/174 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------- 84
            G+   D       +   K+  LE ++ +       +++       L  L          
Sbjct: 502 GGSTSRDNVLKGLVMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRILDILGDYLSIKGYQ 561

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +    G    +   +I  +N       +      + G G+NL    + ++ F   W+ +
Sbjct: 562 FQRLDGGVPSAQRKISIDHFNSPDSKDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQ 620

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q + R       + G K+ V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 621 ADLQAMAR-----AHRIGQKKHVSVYRFVSKDTVEEEILERARKKMILEYAIIS 669


>gi|224008985|ref|XP_002293451.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970851|gb|EED89187.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 543

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQK------- 86
           A+  D           K+  L  ++ +          I++  ++   L  + +       
Sbjct: 340 AIRGDRNAPVMPELSGKMFVLFRLMREMRRPGNGNDKIVIVSNYTQTLDLIGRMCRENNW 399

Query: 87  ---AFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    ++ K      E+N+    L        + G GLNL  GGN LV F   W+ 
Sbjct: 400 GFCRLDGSISMKKRQKMCDEFNDPSSSLVAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNP 458

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +Q   R       + G K+  F Y  +A  T++E + QR  +K  +Q ++
Sbjct: 459 AVDKQAAARCW-----RDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVV 506


>gi|260811612|ref|XP_002600516.1| hypothetical protein BRAFLDRAFT_205490 [Branchiostoma floridae]
 gi|229285803|gb|EEN56528.1| hypothetical protein BRAFLDRAFT_205490 [Branchiostoma floridae]
          Length = 606

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 55  KIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQ 102
           K++ L+ +++  N     ++V   +   L  +++             G T   D    ++
Sbjct: 398 KMQVLQQLLDVFNKQRRKVLVFSFYTKLLDIIEQYLMSTGEVYSRLDGTTRTSDRLRIVK 457

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N    I L      + G GLN   G ++++ F   W+    QQ        R  + G 
Sbjct: 458 DFNTNPNILLCLVSTTAGGLGLNFT-GASVVILFEPTWNPANDQQA-----QDRAYRIGQ 511

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           ++ V VY L+   TI+E +  R   K  + +
Sbjct: 512 RQDVRVYRLVTMGTIEENMYLRQVYKQQLSE 542


>gi|148709831|gb|EDL41777.1| mCG13925 [Mus musculus]
          Length = 1372

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 69   APIIVAYHFNSDLA-----------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
              I++     S L                  RL  + P G+   +     +  N+  I +
Sbjct: 1168 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQ---RHSIVSRFNNDPSIDV 1224

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + +VF    W+     Q ++R       + G KR V VY LI
Sbjct: 1225 LLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLI 1278

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             + T++E ++   + K  I + +++
Sbjct: 1279 TRGTLEEKIMGLQKFKMNIANTVIS 1303


>gi|159490586|ref|XP_001703254.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas
           reinhardtii]
 gi|158280178|gb|EDP05936.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas
           reinhardtii]
          Length = 1219

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 66  ANAAPIIVAYH------FNSDLARLQKAFPQGRTLDKDPCT-----IQEWNEGKIP--LL 112
           A    +++           SD  RL+  FP  R     P       ++ +N    P    
Sbjct: 559 ATGHRVLIFSQMVRVLDIISDYMRLRG-FPHQRLDGSTPAAARHAAMEHFNRPDSPDFAF 617

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q + R       + G    V +Y  + 
Sbjct: 618 LLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQTETVNIYRFVT 671

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
             +++E +L+R + K  +  L++  +
Sbjct: 672 SGSVEEDILERAKRKMVLDHLVIQRM 697


>gi|320170047|gb|EFW46946.1| helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1078

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 84/219 (38%), Gaps = 36/219 (16%)

Query: 8   QRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--EEKHWKEVHDEKIK 57
           QRE+Y  +  ++++  NS +      +   +QL    N    +D  E           + 
Sbjct: 418 QREVYQGILLKDLDVVNSGNANKVRLSNILMQLRKCCNHPYLFDGTEPGPPYTTDKHLLD 477

Query: 58  AL--EVIIE------KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC- 99
           A     +++      +A  + +++       L  L+              G+T  +D   
Sbjct: 478 ACGKMSVLDKLLPKLQAQGSRVLIFSQMTRMLDILEDYCMWRGHTYCRLDGQTDHEDRAR 537

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N       L      + G G+NL Y  + ++ +   W+ +   Q        R  
Sbjct: 538 MIDEYNAPNSSKFLFLLSTRAGGLGINL-YTADTVILYDSDWNPQMDLQA-----QDRAH 591

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K+ V ++  + +NT++E +++R   K  +  +++ 
Sbjct: 592 RIGQKKQVRIFRFVTENTVEERIIERAEMKLRLDAMVIQ 630


>gi|328780249|ref|XP_396786.4| PREDICTED: hypothetical protein LOC413341 [Apis mellifera]
          Length = 2846

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+++L  ++ K  +    +++       L  L+                  +D+    ++
Sbjct: 1691 KLQSLHQLLRKLKSENHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 1750

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1751 RFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1804

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1805 TRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1840


>gi|223997284|ref|XP_002288315.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975423|gb|EED93751.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 692

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 84/223 (37%), Gaps = 38/223 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQL--ANGAVYYDEEKHWKEVHD--- 53
           K Q++LY  L   +IEA           +     +QL       Y  E    + +     
Sbjct: 267 KMQKQLYKKLLLRDIEAITGKNTSSGKTAILNIVMQLRKCCNHPYLFEGVEDRTLDPLGE 326

Query: 54  ------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LD 95
                  K+  ++ ++++     + +++       L  L         +     G T  +
Sbjct: 327 HLVENCGKLNMVDKLLKRLKERGSRVLIFTQMTRILDILEDYMVMRGYKYCRIDGNTDYE 386

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N    +         + G G+NLQ   +  + +   W+ +   Q  +R   
Sbjct: 387 DRERGIDEFNAPNSEKFCFILSTRAGGLGINLQT-ADTCILYDSDWNPQADLQAQDRC-- 443

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V +Y L+++NT++E +++R + K  +  +++ 
Sbjct: 444 ---HRLGQKKPVSIYRLVSENTVEEKIVERAQQKLKLDAMVVQ 483


>gi|212536498|ref|XP_002148405.1| DNA repair protein Rhp26/Rad26, putative [Penicillium marneffei
           ATCC 18224]
 gi|210070804|gb|EEA24894.1| DNA repair protein Rhp26/Rad26, putative [Penicillium marneffei
           ATCC 18224]
          Length = 1157

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 20/181 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------ 86
           L    ++     + +     K+K ++ ++E  +      ++       L  L+K      
Sbjct: 691 LVTHKLFSATTGYGEPSKSGKMKVVKALLELWRDTGHKTLLFAQHRIMLNILEKFVNTLS 750

Query: 87  -----AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       + +    + E+N    I +        G G+NL  G + ++ +   W+
Sbjct: 751 GFNYRRMDGETPIHRRQLLVDEFNNSPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWN 809

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                Q  ER       + G KR V +Y L+   TI+E +  R   K  + + +L   K+
Sbjct: 810 PSTDMQARERAW-----RLGQKREVAIYRLMTAGTIEEKIYHRQIFKQFLTNKVLKDPKQ 864

Query: 201 E 201
            
Sbjct: 865 R 865


>gi|242220532|ref|XP_002476031.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724754|gb|EED78776.1| predicted protein [Postia placenta Mad-698-R]
          Length = 808

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 19/153 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+K L  ++E+  A    +++   F   L  LQK   +             +D     + 
Sbjct: 631 KVKVLLQLLERYHAEGRRVLIFSQFTQILDILQKVLEKEGIRFSLLTGATPVDARQSLVD 690

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+ + + I +      + G G+NL    ++++ F   ++    +Q        R  + G 
Sbjct: 691 EFTDDESISVFLLSTKAGGMGINLT-AASVVIMFDQDFNPHNDKQA-----QDRAYRIGQ 744

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           K+ V V  LI + +I+E +L   +TK  + + +
Sbjct: 745 KQNVDVVKLITKGSIEEDMLALGQTKLALDEAV 777


>gi|225438089|ref|XP_002272543.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1227

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLF 113
           K     +++       L  L+          +       +      I E+N+   + +  
Sbjct: 754 KEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFI 813

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ +   W+     Q  ER       + G  R V VY LI +
Sbjct: 814 LTTKVGGLGTNLT-GANRVIIYDPDWNPSTDMQARERAW-----RIGQTRDVTVYRLITR 867

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V QR   K  + + +L
Sbjct: 868 GTIEEKVYQRQIYKHFLTNKIL 889


>gi|321475222|gb|EFX86185.1| hypothetical protein DAPPUDRAFT_313238 [Daphnia pulex]
          Length = 1791

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 20/167 (11%)

Query: 36   ANGAV-YYDEEKHWKEVHDE----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            ANG++   D       +H      +++++  IIE      ++  +       RL  +   
Sbjct: 1559 ANGSIDSPDTGGSVVSIHRALIFCQLRSMIDIIEND----LLKTHMKTVSYLRLDGSIAA 1614

Query: 91   GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G         ++ +NE   I +L       G GLNL  G + ++F    W+  +  Q ++
Sbjct: 1615 GS----RQGVVKRFNEDPSIDVLLLTTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMD 1669

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R       + G K+ V VY LI + T++E ++   + K    + +++
Sbjct: 1670 R-----AHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKLQTANTIIS 1711


>gi|67517684|ref|XP_658628.1| hypothetical protein AN1024.2 [Aspergillus nidulans FGSC A4]
 gi|40746436|gb|EAA65592.1| hypothetical protein AN1024.2 [Aspergillus nidulans FGSC A4]
          Length = 866

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGR 92
                    K+  L+ +I         I++   F + L  LQ                  
Sbjct: 616 DETLVTASGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAI 675

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +       I+ +N +    +      + G G+NL    + ++ F   W+ ++  Q     
Sbjct: 676 SQADRQAQIKAFNTDKDYKIFLLSTRAGGQGINL-VAADTVILFDSDWNPQQDLQA---- 730

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 731 -QDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 777


>gi|323454552|gb|EGB10422.1| hypothetical protein AURANDRAFT_10276 [Aureococcus anophagefferens]
          Length = 505

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+ AL+ ++ +  A    ++V     + L  L+               G        T
Sbjct: 334 SSKLAALDAVLVRWKAQGHRVLVFSQTIAMLDVLEALVVARGWRYGRMDGGTAPAARQAT 393

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N   K  L+     + G GL+L  G + +V +   W+ +   Q  ER       + 
Sbjct: 394 ADAFNASSKTFLMLLTTRTGGVGLSL-VGADRVVLYDPDWNPQTDAQARERSW-----RL 447

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           G  + V +Y L+   TI+E +  R   K  + + +L+  K+  +
Sbjct: 448 GQTKPVTIYRLVCAGTIEEKIYHRQIFKQALTNKVLSDAKQRRL 491


>gi|297830680|ref|XP_002883222.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329062|gb|EFH59481.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1046

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 23/169 (13%)

Query: 34   QL-ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAF 88
            Q+ ++   Y D++    E        L        A   I+   +   L     R+ ++ 
Sbjct: 861  QMPSSSGPYDDDDVTIVEPMR-----LHSSSPSQGAVKTIIFSQWTGMLDLVELRILESG 915

Query: 89   PQGRTLD-------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             + R LD       +D    +      + ++     +   GLN+      ++   LWW+ 
Sbjct: 916  IEFRRLDGTMSLAARDRAVKEFSKNPDVKVMLMSLKAGNLGLNM-VAACHVILLDLWWNP 974

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                Q I+R       + G  R V V  +  ++T+++ +L     K T+
Sbjct: 975  TTEDQAIDR-----AHRIGQTRPVTVTRITIKDTVEDRILTLQEDKRTM 1018


>gi|256074706|ref|XP_002573664.1| helicase [Schistosoma mansoni]
 gi|238658849|emb|CAZ29896.1| helicase swr1, putative [Schistosoma mansoni]
          Length = 1156

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-- 86
            K  Q       Y            KI+ L   + K  +    I++   F   L  L++  
Sbjct: 897  KLCQFYETLSSYTLSPESIISGSGKIQWLNDNLPKLVSEGHRILIFSQFVIMLDILEEFL 956

Query: 87   --------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           + +    I  +N   I +      + G G+NL  G + ++   + 
Sbjct: 957  RITNRRYIRMDGSTPVSERQTLIDRFNSSSIEVFLLSTRAGGLGINLT-GADTVIIHDID 1015

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            ++        +R    R  + G K  V V  LI++ T++E +L+    K
Sbjct: 1016 FN-----PYNDRQAEDRCHRLGQKNPVHVIRLISEGTLEEGMLRIASEK 1059


>gi|299751215|ref|XP_001830131.2| Fun30p [Coprinopsis cinerea okayama7#130]
 gi|298409272|gb|EAU91796.2| Fun30p [Coprinopsis cinerea okayama7#130]
          Length = 1123

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 19/153 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K+  L  +IE  +     +++   F   L  LQ                   D     + 
Sbjct: 934  KVTTLLKLIEGYRKEDRKMLIFSQFTQILDILQVILKNKGIKFLVLTGSTPVDVRQSLVD 993

Query: 103  EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+ E   IP+      + G G+NL    +++V F   ++    +Q        R  + G 
Sbjct: 994  EFTEDEDIPIFLLSTKAGGMGINLT-AASVVVMFDQDFNPHNDKQA-----QDRAYRIGQ 1047

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            KR V V  LI++ TI+E +L+   TK  + + +
Sbjct: 1048 KRDVDVVKLISRGTIEEDMLKLGETKLALDEAV 1080


>gi|261205500|ref|XP_002627487.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239592546|gb|EEQ75127.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1072

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLD 95
            DE +    +   KI+ L  I++K +     IV   F S L +++           R   
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  KDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAID 941

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 942 RV-----HRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984


>gi|213404262|ref|XP_002172903.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000950|gb|EEB06610.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1356

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
           +  K+  L+ ++ + +     +++       L  L           +             
Sbjct: 685 NSGKMVLLDKLLTRLHRDGHRVLIFSQMVRMLDILGDYMSLRGYPFQRLDGTVPAATRRI 744

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N    P  +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 745 SIDHFNAPNSPDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 798

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++TI+E VL+R R K  ++  +++
Sbjct: 799 RIGQKNHVMVYRFLSKDTIEEDVLERARRKMILEYAIIS 837


>gi|221488620|gb|EEE26834.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
          Length = 872

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 61  VIIEKANAAPIIVAYHFNSDLA---RLQK------AFPQGRT-LDKDPCTIQEWNEGKIP 110
            +I       I++  ++   L    R+ +          G+T + K    I ++N+   P
Sbjct: 522 DVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRLDGQTSIKKRHAMITKFNDPMNP 581

Query: 111 ---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    +Q + R+      + G K++ ++
Sbjct: 582 HSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQKKSCYI 635

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y   +  TI+E + QR   K  +  +L++
Sbjct: 636 YRFFSTGTIEEKIYQRQICKDGLSAMLVS 664


>gi|237837635|ref|XP_002368115.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965779|gb|EEB00975.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221509119|gb|EEE34688.1| transcriptional regulator atrx, putative [Toxoplasma gondii VEG]
          Length = 873

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 61  VIIEKANAAPIIVAYHFNSDLA---RLQK------AFPQGRT-LDKDPCTIQEWNEGKIP 110
            +I       I++  ++   L    R+ +          G+T + K    I ++N+   P
Sbjct: 522 DVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRLDGQTSIKKRHAMITKFNDPMNP 581

Query: 111 ---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    +Q + R+      + G K++ ++
Sbjct: 582 HSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQKKSCYI 635

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y   +  TI+E + QR   K  +  +L++
Sbjct: 636 YRFFSTGTIEEKIYQRQICKDGLSAMLVS 664


>gi|156550287|ref|XP_001603076.1| PREDICTED: similar to CG2684-PA [Nasonia vitripennis]
          Length = 1032

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 31/209 (14%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +   +   D + +N  A N  +K           V+ DE +  K     K   +E I+E
Sbjct: 827  DEEVEDYVADYKIDNRVAANLLTKKN--------PVFDDERRSSKVRAIVKT--IEEILE 876

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEG--KIPL 111
            K     IIV   + S L  + K                  +      + ++N+      +
Sbjct: 877  K--GDKIIVVSQWTSFLGIVAKNLDDIEDAKYAMFTGNVAVKNRQAIVDKFNDPNEDTNI 934

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     + G GLNL  G N L+   + W+ +   Q  +RI      + G K+ V+VY  I
Sbjct: 935  LLLSLTAGGVGLNL-VGANHLLLIDIHWNPQLESQAQDRI-----YRFGQKKNVYVYKFI 988

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             ++TI+E V      K  I + +L   + 
Sbjct: 989  CKDTIEERVKNLQDKKLEIANHVLTGSRA 1017


>gi|134117101|ref|XP_772777.1| hypothetical protein CNBK1510 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255395|gb|EAL18130.1| hypothetical protein CNBK1510 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1409

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYY----DEEKHWKEVHDE- 54
            K Y   Q+           +     +     +QL       Y     DE+       DE 
Sbjct: 798  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 857

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKD 97
                  K + L+ I+ K       +++ +             D    +     G T  +D
Sbjct: 858  IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDFRGWKYCRLDGSTKAED 917

Query: 98   PCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              T+   +N+   P  +      + G GLNLQ   + ++ +   W+     Q        
Sbjct: 918  RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQ-SADTVIIYDTDWNPHADLQA-----QD 971

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K + +  
Sbjct: 972  RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGKFDEVTT 1022


>gi|302406532|ref|XP_003001102.1| TATA-binding protein-associated factor MOT1 [Verticillium albo-atrum
            VaMs.102]
 gi|261360360|gb|EEY22788.1| TATA-binding protein-associated factor MOT1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1876

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               +V       L  +Q                  G   +K    + ++N +    +L  
Sbjct: 1653 HRALVFCQMKEMLDMVQNTVLKSMLPSVSFLRLDGGVEANKRQAIVNKFNQDPSYDVLLL 1712

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY LI + 
Sbjct: 1713 TTSVGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRG 1766

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E +L   R K  +   ++N
Sbjct: 1767 TLEEKILSLQRFKIDVASTVVN 1788


>gi|294462184|gb|ADE76644.1| unknown [Picea sitchensis]
          Length = 407

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
           L  +  K +   ++V  ++   L    +                ++ K    +Q +N+  
Sbjct: 8   LAHLFTKTDDRIVLV-SNYTQTLDLFAQICRERNYPFLRLDGTTSIGKRRKLVQRFNDPS 66

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                      + G GLNL  GGN LV F   W+    +Q   R+      + G K+ V+
Sbjct: 67  QNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPANDKQAAARVW-----RDGQKKRVY 120

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +Y  +   TI+E V QR  +K  +Q ++
Sbjct: 121 IYRFLTTGTIEEKVYQRQMSKEGLQKVV 148


>gi|328785433|ref|XP_396195.3| PREDICTED: chromatin-remodeling complex ATPase chain Iswi isoform 1
           [Apis mellifera]
          Length = 959

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEK 46
           +K Y    K QRE Y  +  ++I+  N A K  K       +QL    N    +D  E  
Sbjct: 361 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 420

Query: 47  HWKEVHDE------KIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFP 89
                 +       K+  L+ ++ K     + +++       L  L         Q    
Sbjct: 421 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRL 480

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I E+N    +  +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 481 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQ 539

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G ++ V V+  I +NT++E +++R   K  +  L++ 
Sbjct: 540 AMDR-----AHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQ 584


>gi|195999278|ref|XP_002109507.1| hypothetical protein TRIADDRAFT_53614 [Trichoplax adhaerens]
 gi|190587631|gb|EDV27673.1| hypothetical protein TRIADDRAFT_53614 [Trichoplax adhaerens]
          Length = 619

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 89/255 (34%), Gaps = 65/255 (25%)

Query: 1   MKQYHKFQR-----ELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           M+ Y  F +     EL  DL       +     ++         + N  V    EKH + 
Sbjct: 294 MELYANFTKSRATDELDLDLSSLEESKKEPSKMHAFQALQYLRLICNHPVLVLNEKHPQY 353

Query: 51  V-----------------HDEKIKALEVII-EKANAAP-----------------IIVAY 75
                             H  K+ AL+ ++ E     P                  +V +
Sbjct: 354 YEITSRLSRENLELSSIQHSAKLMALKQLLLECGIGIPTTNVASVSVMPVVAQHRALVFF 413

Query: 76  HFNSDLARLQKAFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGH 121
              + +  +++   + +             ++ +    +  +N +  I ++       G 
Sbjct: 414 QSKAMMKLVEEKLFKDKDSTVAYVKLSGDVSIKERAEIVSRFNKDPSIDVMLLTTKVGGV 473

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +NT++E +L
Sbjct: 474 GLNLT-GADTVIFVEHDWNPMADAQAMDR-----AHRIGQKKVVNVYRLITRNTLEEKIL 527

Query: 182 QRLRTKSTIQDLLLN 196
                KS I + +++
Sbjct: 528 GLQNFKSKIANTVIS 542


>gi|189188400|ref|XP_001930539.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972145|gb|EDU39644.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1794

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGR 92
                 V D+   A   + E  +    +V       L  +Q                  G 
Sbjct: 1544 GASDVVSDKSANANGDLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGV 1603

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R 
Sbjct: 1604 EATKRQEIVNKFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR- 1661

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY ++ + T++E +L   R K  I   ++N
Sbjct: 1662 ----AHRIGQKKVVNVYRIVTRGTLEEKILNLQRFKIDIASTVVN 1702


>gi|255947266|ref|XP_002564400.1| Pc22g03590 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591417|emb|CAP97647.1| Pc22g03590 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1100

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 43/230 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + QR  Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 429 EMQRRWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 488

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ +++  +A+ + +++    +  L  L+              G T
Sbjct: 489 EHLV--FNSGKMVILDKLLKRMQADGSRVLIFSQMSRVLDILEDYCCFRDYNYCRIDGTT 546

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+      +      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 547 AHEDRIAAIDDYNKPGSDKFVFLLTTRAGGLGINLT-SADIVVLFDSDWNPQADLQAMDR 605

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + 
Sbjct: 606 -----AHRIGQTKQVKVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRS 650


>gi|20809475|gb|AAH29381.1| HELLS protein [Homo sapiens]
          Length = 348

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 105 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 164

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +      + G G+NL    + ++ +    + +   Q  +R      
Sbjct: 165 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDCNPQSDLQAQDRC----- 218

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 219 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 257


>gi|242778005|ref|XP_002479148.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722767|gb|EED22185.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1037

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
             +  L   +  + +  I++  ++ S L  L                     K    + +
Sbjct: 652 RVLDQLLHNLRTSTSEKIVIVSNYTSTLNLLGVLLTSLSLPFLRLDGSTPSSKRQSLVDD 711

Query: 104 WNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV + + W+     Q + RI      + G
Sbjct: 712 FNRAPASTCFAFLLSAKAGGTGLNLT-GASRLVLYDVDWNPATDLQAMARI-----HRDG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR  ++Y ++ +  ++E + QR  TK  + D ++ +
Sbjct: 766 QKRHCYIYRIMLKGALEEKIWQRQVTKIGLADSVMES 802


>gi|239611302|gb|EEQ88289.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1072

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLD 95
            DE +    +   KI+ L  I++K +     IV   F S L +++           R   
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  KDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAID 941

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 942 RV-----HRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984


>gi|255936215|ref|XP_002559134.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583754|emb|CAP91771.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1116

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------- 86
           A Y D E+        K+K L+ ++E  +      ++       L  ++K          
Sbjct: 664 ADYGDAER------SGKMKVLKGLLEVWRDTGHKTLLFTQGRLMLDIIEKFLGVLGGFNC 717

Query: 87  -AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   + +    + ++N    I +        G G+NL  G + ++ +   W+    
Sbjct: 718 RRMDGTTPIKERQSLVNDFNNDPNIHVFLLTTRVGGIGVNLT-GADRVIIYDPDWNPSTD 776

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q  ER       + G KR V ++ L+ + TI+E +  R   K  + + +
Sbjct: 777 LQARERAW-----RLGQKRDVTIFRLMTKGTIEEKIYHRQIFKQFLTNKI 821


>gi|157128256|ref|XP_001661368.1| hypothetical protein AaeL_AAEL002341 [Aedes aegypti]
 gi|108882255|gb|EAT46480.1| conserved hypothetical protein [Aedes aegypti]
          Length = 851

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 51  VHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP 98
               K+  L+ ++E         +IV+Y+    L  +         +     G T  +D 
Sbjct: 572 TDSGKLAVLDSLLETLIQRQEKAVIVSYYGK-TLDMIMGLCEHYNYKYCRLDGSTPSQDR 630

Query: 99  -CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N       +      + G GLNL  G + L+ +   W+     Q + RI    
Sbjct: 631 CKIVSSFNSPSSDTFIFLLSAKAGGIGLNLT-GASRLILYDNDWNPASDLQAMSRIW--- 686

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  R VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 687 --RDGQTRNVFIYRLITAFSIEEKIYQRQISKTSLSGTVVD 725


>gi|66813000|ref|XP_640679.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60468700|gb|EAL66702.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1655

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
              K+K +E I+         +++       L  +++                 ++ +  C
Sbjct: 1112 SAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQC 1171

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++++N +  + +        G GLNL  G N ++ F   W+     Q  ER+      +
Sbjct: 1172 LVEQFNIDPSLFIFLLTTKVGGLGLNLT-GANRVILFDPDWNPSTDMQARERV-----YR 1225

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G K+AV +Y LI   TI+E +  R   K  + + +L
Sbjct: 1226 IGQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKIL 1262


>gi|115891453|ref|XP_781410.2| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
 gi|115930718|ref|XP_001181304.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
          Length = 1335

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 35/223 (15%)

Query: 2   KQYHKFQ-----RELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------YDEEKHWK 49
           KQY+KF      + L   L+G      N   +  KC    N ++         D +  + 
Sbjct: 731 KQYYKFILTRNFKALCKGLKGNTSSFINIMMELKKC---CNHSLLIRPPEDESDPDLKYI 787

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDL----ARLQKAFPQGRTLDK------D 97
                K+  L+ ++ +       +++       L      LQ    Q + LD        
Sbjct: 788 IRGSGKLVLLDKLLTRLQERGHRVLIFSQMVRMLDILSEYLQYRHFQHQRLDGSIRGEIR 847

Query: 98  PCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N EG           + G GLNL    + ++ F   W+ +   Q + R     
Sbjct: 848 KQALDHFNAEGSQDFCFLLSTRAGGLGLNL-ASADTVIIFDSDWNPQNDIQAMAR----- 901

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G +R V +Y L+ ++TI+E +++R + K  +  L++  +
Sbjct: 902 AHRIGQRRQVNIYRLVTKDTIEEEIIERAKRKMVLDHLVIQRM 944


>gi|168058055|ref|XP_001781026.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162667507|gb|EDQ54135.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 808

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 38/215 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVHDEKIKA 58
            ++E    +      A +  +  ++  +  +    +D        E +H  E    K+K 
Sbjct: 293 LKKESPKIIGDSPGTATSLQNIVIQLRKACSHPYLFDGIEPEPFQEGEHIVE-ASGKLKM 351

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWN------- 105
           L+VI++K +     +++       L  LQ            LD      + +N       
Sbjct: 352 LDVILKKLHASGHRVLIFAQMTRTLDILQDYLEYRSYSYERLDGSVRAEERFNAVHSFSA 411

Query: 106 ----------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                      G   +      + G GLNL  G + ++F+   W+ +  +Q ++R     
Sbjct: 412 GHSKCGGDAKSGSAFVFLLTTRAGGVGLNL-IGADTVIFYEQDWNPQADKQALQR----- 465

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G    V    LI ++TIDE++++R + K  +
Sbjct: 466 AHRIGQISPVLAINLITRHTIDEVIMRRAKKKLEL 500


>gi|156383405|ref|XP_001632824.1| predicted protein [Nematostella vectensis]
 gi|156219886|gb|EDO40761.1| predicted protein [Nematostella vectensis]
          Length = 1022

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 42/230 (18%)

Query: 2   KQYH---KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD------ 43
           K Y    K QR  Y  +  ++I+  N A KT K       +QL    N    +D      
Sbjct: 375 KVYTGLTKMQRSWYTKILMKDIDVVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGP 434

Query: 44  ---EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
               + H  E +  K++ L+ ++ +     + +++       L  L+             
Sbjct: 435 PYTTDVHLIE-NSGKMRVLDKLLARLKQEGSRVLIFSQMTRLLDILEDYCLWRQYDYCRL 493

Query: 90  QGRTLDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++    I  +N       +      + G G+NL    +I++ +   W+ +   Q
Sbjct: 494 DGQTPHEERQAYINSFNMPGSTKFIFMLSTRAGGLGINL-ATADIVILYDSDWNPQVDLQ 552

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V V+  I+++T++E +++R   K  +  +++ 
Sbjct: 553 AMDR-----AHRIGQKKQVKVFRFISESTVEERIIERAEMKLRLDAVVIQ 597


>gi|156062402|ref|XP_001597123.1| hypothetical protein SS1G_01317 [Sclerotinia sclerotiorum 1980]
 gi|154696653|gb|EDN96391.1| hypothetical protein SS1G_01317 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 892

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
              +++   F + L  L+                    D     I+E+NE     L    
Sbjct: 670 GHKVLIFSQFKTQLDILEDYARELRGWKVCRIDGSVAQDFRRQQIKEFNEDPDFKLFLLS 729

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++  Q        R  + G  + V V+ L  + T
Sbjct: 730 TRAGGQGINL-ASADTVILFDSDWNPQQDLQA-----QDRAHRIGQTKPVVVFRLATKGT 783

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 784 VEESLLMSADAKRRLEKLVI 803


>gi|67527878|ref|XP_661791.1| hypothetical protein AN4187.2 [Aspergillus nidulans FGSC A4]
 gi|40740096|gb|EAA59286.1| hypothetical protein AN4187.2 [Aspergillus nidulans FGSC A4]
 gi|259481212|tpe|CBF74527.1| TPA: TBP associated factor (Mot1), putative (AFU_orthologue;
            AFUA_1G05830) [Aspergillus nidulans FGSC A4]
          Length = 1904

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 40/190 (21%)

Query: 41   YYDEEKHWKEVHDE--KIKALEVI-------IEKANA-----------APIIVAYHFNSD 80
            Y  E+K +        K+ AL+ +       +E                  +V       
Sbjct: 1638 YLQEKKSYLRDVSHAPKLSALKDLLLDCGIGVEPTEGNLGAGASYVSPHRALVFCQMKEM 1697

Query: 81   LAR-----LQKAFPQGRTLD--------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L       LQK  P  + L         +    +  +N +    +L    +  G GLNL 
Sbjct: 1698 LDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLT 1757

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++  Q ++R       + G K+ V VY LI + T++E +L   R 
Sbjct: 1758 -GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1811

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1812 KIDVASTVVN 1821


>gi|330925332|ref|XP_003301007.1| hypothetical protein PTT_12406 [Pyrenophora teres f. teres 0-1]
 gi|311324570|gb|EFQ90879.1| hypothetical protein PTT_12406 [Pyrenophora teres f. teres 0-1]
          Length = 1935

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGR 92
                 V D+   A   + E  +    +V       L  +Q                  G 
Sbjct: 1685 GASDVVSDKSANANGDLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGV 1744

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R 
Sbjct: 1745 EATKRQEIVNKFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR- 1802

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY ++ + T++E +L   R K  I   ++N
Sbjct: 1803 ----AHRIGQKKVVNVYRIVTRGTLEEKILNLQRFKIDIASTVVN 1843


>gi|195577949|ref|XP_002078829.1| GD22327 [Drosophila simulans]
 gi|194190838|gb|EDX04414.1| GD22327 [Drosophila simulans]
          Length = 847

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPC 99
              K + L+ ++ K       +++   F   L       R++K           ++    
Sbjct: 653 DSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQD 712

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N    I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 713 LITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDFNPYNDKQAEDRC-----HR 766

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G +R V +Y LI+++TI+E +L     K  ++  + +  K E 
Sbjct: 767 MGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 810


>gi|313237190|emb|CBY12409.1| unnamed protein product [Oikopleura dioica]
          Length = 1294

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP--- 89
            ++AN A+  D +         K++ L  +++      I++       L  + K      
Sbjct: 420 RRMANNAI-KDIDLDLLLSESGKMQVLADLVDAIIPEKILIFSQSIKILDIIAKILDDKT 478

Query: 90  --------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   + +   +D    +  ++ +I +          GL L      ++ +   W+ 
Sbjct: 479 VNFIRMDGKDKLPIRDEKVKRFQSDKRIKVFMLTTGVGAVGLTLT-AATRVIVYDPDWNP 537

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q ++R       + G  R V V+ LI   TI+E +  R   K +I
Sbjct: 538 GRDDQAVDR-----AYRIGQTRPVVVFRLITCETIEEKIYSRQLFKKSI 581


>gi|16332119|ref|NP_442847.1| Snf2/Rad54 family helicase [Synechocystis sp. PCC 6803]
 gi|1653748|dbj|BAA18659.1| helicase of the snf2/rad54 family [Synechocystis sp. PCC 6803]
          Length = 1039

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
            + LE II  +    +++   F S    L+    +           G   ++    ++ + 
Sbjct: 862  EMLEEII--SEGDRVLIFTQFASWGHLLKPYLEKYFNQEVLYLHGGTPAEQRQALVERFQ 919

Query: 106  EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      L      + G GLNL    N +     WW+     Q  +R       + G  R
Sbjct: 920  QDPNSPYLFILSLKAGGTGLNLTR-ANHVFHVDRWWNPAVENQATDR-----AFRIGQTR 973

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+  +   T++E +   +  K  + +  ++A
Sbjct: 974  NVQVHKFVCTGTLEEKINAMMADKQQLAEQTVDA 1007


>gi|15291937|gb|AAK93237.1| LD32234p [Drosophila melanogaster]
          Length = 1095

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
           K++ ++ ++ +   N   +++       L  L+              G T  +    + +
Sbjct: 257 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 316

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  K I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 317 RFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 370

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 371 TRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 406


>gi|322701620|gb|EFY93369.1| SNF2 family helicase/ATPase [Metarhizium acridum CQMa 102]
          Length = 1677

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
              KI+ L  I++ A  +   ++V  H    L  L K F            G  + K    
Sbjct: 1164 STKIELLIQILDDAKRSKDKVLVFSHSIPTLNYLSKLFQEQKRCFSRLDGGTPIAKRQDE 1223

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+++N  +  L      + G GLN+Q G N +V     W+    QQ I R       + G
Sbjct: 1224 IKKFNANQTELYLISTRAGGVGLNIQ-GANKVVILDSKWNPVHEQQAIGR-----SYRIG 1277

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V VYY +   T ++ +  R   K+ +   +++
Sbjct: 1278 QSKPVSVYYFVTAGTFEQDLHGRAIFKTQLATRVVD 1313


>gi|58260984|ref|XP_567902.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229983|gb|AAW46385.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 926

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 67  NAAPIIVAYHFNSDLARLQ------KAFPQGRTLDKDPC-----TIQEWNEGK-----IP 110
               +++   F + L  ++      K +   R     P       + E+N GK       
Sbjct: 662 KGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTPQESRREQMDEFNGGKDDPNACK 721

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL    + ++FF   W+ +   Q        R  + G  + V V+ L
Sbjct: 722 LFLLSTRAGGLGINL-VSADTVIFFDQDWNPQMDLQA-----QDRAHRIGQTKPVLVFRL 775

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++ +TI+  +L +   K  ++ L+++  K
Sbjct: 776 VSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|315053040|ref|XP_003175894.1| chromodomain helicase hrp3 [Arthroderma gypseum CBS 118893]
 gi|311341209|gb|EFR00412.1| chromodomain helicase hrp3 [Arthroderma gypseum CBS 118893]
          Length = 1559

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 792 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 850

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 851 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 909

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 910 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 951


>gi|297744167|emb|CBI37137.3| unnamed protein product [Vitis vinifera]
          Length = 1116

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLF 113
           K     +++       L  L+          +       +      I E+N+   + +  
Sbjct: 727 KEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFI 786

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ +   W+     Q  ER       + G  R V VY LI +
Sbjct: 787 LTTKVGGLGTNLT-GANRVIIYDPDWNPSTDMQARERAW-----RIGQTRDVTVYRLITR 840

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V QR   K  + + +L
Sbjct: 841 GTIEEKVYQRQIYKHFLTNKIL 862


>gi|223992919|ref|XP_002286143.1| rad54-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220977458|gb|EED95784.1| rad54-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 549

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 22/179 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL-----QKAFPQ 90
           G  Y DE          K++ L  I+          I+   +   L  +     ++ +  
Sbjct: 350 GCFYGDE---RFVEVSGKLQVLAKILPLWHKQGHRFILFCQWRKTLNIIEQFTRKQNWKF 406

Query: 91  GRT-----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            R      +      + ++N  +    +     + G GLN+  G N +V F   W+ +  
Sbjct: 407 ARLDGNTNVASRQKLVDKFNNDESYFCMLMTTRTGGVGLNVT-GANRVVIFDPDWNPQTD 465

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            Q  ER       + G K+ V VY LI   TI+E + QR   K+ I + +L   K+  +
Sbjct: 466 AQARERAW-----RFGQKKDVTVYRLITAGTIEEKIYQRQIFKTAITNQVLQDPKQRRL 519


>gi|194859366|ref|XP_001969360.1| GG23998 [Drosophila erecta]
 gi|190661227|gb|EDV58419.1| GG23998 [Drosophila erecta]
          Length = 847

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPC 99
              K + L+ ++ K       +++   F   L       R++K           ++    
Sbjct: 653 DSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQD 712

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N    I +      + G G+NL      ++   + ++    +Q  +R       +
Sbjct: 713 LITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDFNPYNDKQAEDRC-----HR 766

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G +R V +Y LI+++TI+E +L     K  ++  + +  K E 
Sbjct: 767 MGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 810


>gi|149239807|ref|XP_001525779.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449902|gb|EDK44158.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1139

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 65/197 (32%), Gaps = 28/197 (14%)

Query: 22  AFNSASKTVKCLQLANGAVY--YDEEKHWKEVHDEKIKA-----------LEVIIEKANA 68
              S +      ++ N       DE       +  K+             L  I E    
Sbjct: 789 GLTSLALINVFRKICNSPSLLATDEFYQKIATNTFKLSTSSGKIHVLIPLLLEITECKER 848

Query: 69  APIIVAYHFNSDLAR-------LQKAFPQGRTLDK-DPCTIQEWNEGK-IPLLFAHPASC 119
             +I  Y    DL         L+     G T +      + E+N  + I +      S 
Sbjct: 849 TVLISNYTKTLDLLEHVLRKLNLRYTRLDGSTPNNMRNKLVNEFNRNEEIHVFLLSSKSG 908

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y L     IDE 
Sbjct: 909 GMGINL-VGASRLILFDNDWNPSTDLQSLSRI-----HRDGQTKPCFIYRLFTAGCIDEK 962

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   KS +    L+
Sbjct: 963 IFQRQLMKSKLSSKFLD 979


>gi|259488679|tpe|CBF88314.1| TPA: SNF2 family helicase/ATPase PasG, putative (AFU_orthologue;
           AFUA_1G13010) [Aspergillus nidulans FGSC A4]
          Length = 868

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGR 92
                    K+  L+ +I         I++   F + L  LQ                  
Sbjct: 618 DETLVTASGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAI 677

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +       I+ +N +    +      + G G+NL    + ++ F   W+ ++  Q     
Sbjct: 678 SQADRQAQIKAFNTDKDYKIFLLSTRAGGQGINL-VAADTVILFDSDWNPQQDLQA---- 732

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 733 -QDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 779


>gi|327302918|ref|XP_003236151.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
 gi|326461493|gb|EGD86946.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
          Length = 1225

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 736 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIGGFNGFNYRRMDGNTPIKVRQS 795

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 796 MVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 849

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|52076609|dbj|BAD45511.1| putative RAD26 [Oryza sativa Japonica Group]
          Length = 789

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +E +++  K     +++       L  ++          +         +    
Sbjct: 314 SGKMKVVEQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMAL 373

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N   +I +        G G NL  G N ++ +   W+     Q  ER       + 
Sbjct: 374 IDEFNNTDEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDMQARERAW-----RI 427

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  R V VY LI + TI+E V  R   K  + + +L
Sbjct: 428 GQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVL 463


>gi|304360695|ref|YP_003856826.1| putative helicase [Clostridium phage phiCTP1]
 gi|302495554|gb|ADL40334.1| putative helicase [Clostridium phage phiCTP1]
          Length = 570

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 20/205 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+     +  DL      + N  ++  +  Q+ +      E    + +   K+  LE 
Sbjct: 361 KIYNSVLNSVKDDLDKIT-TSNNPLAQLTRLRQVTDYTGLVSE----RVLESAKLDRLEE 415

Query: 62  IIEK--ANAAPIIVAYHF-------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +I+   AN    I+  ++          L R   A+  G+  + D    +  N+    ++
Sbjct: 416 LIDTINANGKKTIIFSNWEKVTQEVKKRLIRFNPAYITGKVKNIDDEVQKFQNDDSCKII 475

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    + ++F    W+     Q  +R       + G    V +  L+ 
Sbjct: 476 IGTIGAMGTGLTLT-AASYVIFLDEPWNRALKDQAEDR-----AYRIGTNSTVSIITLLC 529

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
            NTID  V + ++ K    D+L++ 
Sbjct: 530 NNTIDVKVHELVKQKGQYSDVLVDG 554


>gi|17551114|ref|NP_508736.1| hypothetical protein C52B9.8 [Caenorhabditis elegans]
 gi|13775404|gb|AAK39219.1| Hypothetical protein C52B9.8 [Caenorhabditis elegans]
          Length = 1336

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 45/230 (19%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVK-----CLQLANGAVYYD----------EEKH 47
            Y   Q+ L  D         N+ SK+++       +L N    ++          + + 
Sbjct: 619 LYKHMQKGLLLD------GKTNTGSKSLRNTMIHLRKLCNHPFLFENVEESCRNFWDARF 672

Query: 48  WKEVH----DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGR 92
              V       K++ L  I+   +A    +++ +   S +           +Q     G 
Sbjct: 673 ISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGS 732

Query: 93  TL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           T  D+    + ++N    +  L      + G GLNLQ   + ++ F   W+  +  Q   
Sbjct: 733 TKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-- 789

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                R  + G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 790 ---QDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGK 836


>gi|134116877|ref|XP_772665.1| hypothetical protein CNBK0390 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255283|gb|EAL18018.1| hypothetical protein CNBK0390 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 926

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 67  NAAPIIVAYHFNSDLARLQ------KAFPQGRTLDKDPC-----TIQEWNEGK-----IP 110
               +++   F + L  ++      K +   R     P       + E+N GK       
Sbjct: 662 KGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTPQESRRDQMDEFNGGKDDPNACK 721

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL    + ++FF   W+ +   Q        R  + G  + V V+ L
Sbjct: 722 LFLLSTRAGGLGINL-VSADTVIFFDQDWNPQMDLQA-----QDRAHRIGQTKPVLVFRL 775

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++ +TI+  +L +   K  ++ L+++  K
Sbjct: 776 VSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|58270438|ref|XP_572375.1| transcription activator snf2l1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57228633|gb|AAW45068.1| transcription activator snf2l1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 1096

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + QR+ Y  L  ++I+A N  +             +QL    N    +D           
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLD 95
                +  K+  L+ +++   A  + +++    +  L  L         Q     G T  
Sbjct: 511 QHLVDNAGKMVILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N  +    +      + G G+NL    +I+V F   W+ +   Q ++R  
Sbjct: 571 EDRIAAIDEYNAPESEKFVFLLTTRAGGLGINL-VTADIVVLFDSDWNPQADLQAMDR-- 627

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 628 ---AHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|327348692|gb|EGE77549.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1072

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLD 95
            DE +    +   KI+ L  I++K +     IV   F S L +++           R   
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  KDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAID 941

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 942 RV-----HRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984


>gi|242091593|ref|XP_002441629.1| hypothetical protein SORBIDRAFT_09g030646 [Sorghum bicolor]
 gi|241946914|gb|EES20059.1| hypothetical protein SORBIDRAFT_09g030646 [Sorghum bicolor]
          Length = 373

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 52  HDEKIKALEVII---------------EKANAAPIIVAYHFNSDLARLQK---------- 86
           H  K+ AL+ I+                      +++     + L  ++K          
Sbjct: 124 HSPKLVALQEILHECGIGSEVSSPDASTAVGQHRVLIFAQHKAFLDIIEKDLFQSHMRSV 183

Query: 87  ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      +K    ++ +N +  I +L       G GLNL    + LVF    W+  
Sbjct: 184 TYLRLDGSVDPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT-SADTLVFMEHDWNPM 242

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  Q ++R       + G ++ V V+ LI + T++E V+   R K ++ + ++NA
Sbjct: 243 KDLQAMDR-----AHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINA 292


>gi|149633136|ref|XP_001511990.1| PREDICTED: similar to chromodomain helicase DNA binding protein
           1-like [Ornithorhynchus anatinus]
          Length = 819

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           MK    F+RE+     G+ ++  N  S+  KC+    G  Y  E    +           
Sbjct: 264 MKDLDAFEREM-----GKKVKLQNILSQLRKCV----GHPYLFEGVEPEPFAIGDHLVEA 314

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    A    +++       L  LQ              G    ++    
Sbjct: 315 SGKLHLLDKLLAFLYAGGHRVLLFSQMTRMLDVLQDYMDYRGYSYERLDGSVRGEERHLA 374

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  + +      + G G+NL    + ++F    ++ +   Q   R+      + G
Sbjct: 375 IKNFGQQPVFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQATARV-----HRIG 428

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V +  LI ++T++E++ +   +K  + + ++  
Sbjct: 429 QSKPVKIIRLIGRDTVEEIIYRTAVSKLRLTNAIMEG 465


>gi|308802858|ref|XP_003078742.1| DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri]
 gi|116057195|emb|CAL51622.1| DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri]
          Length = 851

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K K L  ++E+        +V     + L  ++    +             +D+    
Sbjct: 449 SAKSKFLMSMLERFRIEGHRTLVFSQSQATLDIIEANIREANIDFVRIDGKVNVDERDRR 508

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++     IP++       G GL L     +++ F   W+     Q ++R       + 
Sbjct: 509 VTKFRSQDDIPVMLLTARVGGLGLTLTEATRVII-FDPAWNPTTDNQSVDR-----AYRI 562

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G  + V VY ++   TI+E V +R   K ++     + +
Sbjct: 563 GQTKDVVVYRMVTCGTIEEKVYRRQVFKGSLSKACTDGV 601


>gi|327299934|ref|XP_003234660.1| chromodomain helicase [Trichophyton rubrum CBS 118892]
 gi|326463554|gb|EGD89007.1| chromodomain helicase [Trichophyton rubrum CBS 118892]
          Length = 1558

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 792 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 850

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 851 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 909

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 910 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 951


>gi|134117902|ref|XP_772332.1| hypothetical protein CNBL2000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254945|gb|EAL17685.1| hypothetical protein CNBL2000 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1096

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + QR+ Y  L  ++I+A N  +             +QL    N    +D           
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLD 95
                +  K+  L+ +++   A  + +++    +  L  L         Q     G T  
Sbjct: 511 QHLVDNAGKMVILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N  +    +      + G G+NL    +I+V F   W+ +   Q ++R  
Sbjct: 571 EDRIAAIDEYNAPESEKFVFLLTTRAGGLGINL-VTADIVVLFDSDWNPQADLQAMDR-- 627

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 628 ---AHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|225440123|ref|XP_002277489.1| PREDICTED: similar to SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein [Vitis vinifera]
          Length = 874

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL--- 94
            + E    E    K+  L   +  +         +V   F   L  L++           
Sbjct: 688 DNSEIPSSECTSSKVLTLLKFLSASRDQNPSTKSVVFSQFRKMLLLLEQPLKAAGFKTLR 747

Query: 95  -------DKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +    I+E+         +L A   + G G+NL    + +     WW+    
Sbjct: 748 LDGSMNAKRRAQVIEEFGAPGPNGPTVLLASLKASGAGINLT-AASRVYLLEPWWNPAVE 806

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +Q ++R+      + G K  V +  LIA+N+I+E +L+    K  +      A  +  + 
Sbjct: 807 EQAMDRV-----HRIGQKEDVKIVRLIARNSIEERILELQERKKKLAK---EAFGRRGLK 858


>gi|326471229|gb|EGD95238.1| DNA repair and recombination protein RAD26 [Trichophyton tonsurans
           CBS 112818]
          Length = 1225

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 736 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQS 795

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 796 MVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 849

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|302307844|ref|NP_984605.2| AEL256Cp [Ashbya gossypii ATCC 10895]
 gi|299789196|gb|AAS52429.2| AEL256Cp [Ashbya gossypii ATCC 10895]
          Length = 1866

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 28/181 (15%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---- 85
            ++ L L  G    D +++   +        E +I +      ++       L  ++    
Sbjct: 1621 LRNLLLECGIGVQDVDQNSISLPSS-----ENVISQ---HRALIFCQLKDMLDMIENDLF 1672

Query: 86   --------KAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G    +D    ++++NE   I  L       G GLNL  G + ++F 
Sbjct: 1673 KKYLPSVTYMRLDGSVESRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFI 1731

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q ++R       + G K+ V VY +I + +++E ++   + K  I   ++
Sbjct: 1732 EHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRIITKGSLEEKIMGLQKFKMNIASTVV 1786

Query: 196  N 196
            N
Sbjct: 1787 N 1787


>gi|321264716|ref|XP_003197075.1| chromatin remodelling complex ATPase chain [Cryptococcus gattii
           WM276]
 gi|317463553|gb|ADV25288.1| Chromatin remodelling complex ATPase chain, putative [Cryptococcus
           gattii WM276]
          Length = 1096

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + QR+ Y  L  ++I+A N  +             +QL    N    +D           
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLD 95
                +  K+  L+ +++   A  + +++    +  L  L         Q     G T  
Sbjct: 511 QHLVDNAGKMLILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 96  KDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N    +  +      + G G+NL    +I+V F   W+ +   Q ++R  
Sbjct: 571 EDRIAAIDEYNAPGSEKFVFLLTTRAGGLGINL-VTADIVVLFDSDWNPQADLQAMDR-- 627

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 628 ---AHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|241950577|ref|XP_002418011.1| DNA repair protein, putative [Candida dubliniensis CD36]
 gi|223641350|emb|CAX43310.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 1088

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 52   HDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRT------------LD 95
               KI+AL   ++  +     + +IV   F+S L  +                     ++
Sbjct: 911  SSSKIQALIRHLKALHSQSPNSKVIVFSQFSSYLDIIHSELKLASEDFIVFKFDGRLNMN 970

Query: 96   KDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 ++ +N     GKI +L     +CG GLNL    +       WW      Q I+RI
Sbjct: 971  DRTKLLESFNQPLDNGKIAILLLSLKACGVGLNLTT-ASRAYMMDPWWSPSIEDQAIDRI 1029

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G    V V   I +N+I+  +L+    K  I
Sbjct: 1030 -----HRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1063


>gi|74197316|dbj|BAC37509.2| unnamed protein product [Mus musculus]
          Length = 378

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 39/229 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 55  VKIYVGLSKMQREWYTRILIKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 114

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 115 PLFTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 174

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +T  +   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q 
Sbjct: 175 DEQTPHERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA 233

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++        + G ++ V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 234 MD-----YAHRIGQRKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 277


>gi|209945960|gb|ACI97211.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 19/143 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG 107
            L  I  + N   +++  ++   L   ++   + +          ++ K    +  +N+ 
Sbjct: 33  MLAAIRAEGNDKVVLI-SNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDP 91

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    L      + G GLNL  G N L  F   W+    +Q + R+      + G K+  
Sbjct: 92  ESDSFLFMLSSKAGGCGLNL-IGANRLFMFDPDWNPANDEQAMARVW-----RDGQKKPC 145

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
           ++Y L+A  +I+E   QR   K 
Sbjct: 146 YIYRLVASGSIEEKXXQRQTHKK 168


>gi|323449633|gb|EGB05519.1| hypothetical protein AURANDRAFT_30762 [Aureococcus anophagefferens]
          Length = 603

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 64  EKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDPCTIQEWN--EG 107
           +KA  + +++   F   L  L++                       +    ++ +N  E 
Sbjct: 462 KKAAGSRVLLFSQFTLTLDVLEEYCAAHHGDRGVGYLRLDGATGRIQREMDMRSFNASES 521

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           KI L      + G G+NL    + +V +   W+ +   Q ++R       + G +  V V
Sbjct: 522 KIFLYLISTRAGGQGINL-ATADTVVLYDTCWNPQVDLQAMDR-----AHRIGQRGQVTV 575

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y LIA++T++E V  R   K  +  L++
Sbjct: 576 YRLIARDTVEEKVHARAHQKLLLDALVM 603


>gi|254577371|ref|XP_002494672.1| ZYRO0A06996p [Zygosaccharomyces rouxii]
 gi|238937561|emb|CAR25739.1| ZYRO0A06996p [Zygosaccharomyces rouxii]
          Length = 1529

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 88/210 (41%), Gaps = 29/210 (13%)

Query: 9    RELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--------KIKAL 59
            REL   L   N +++++ A    +   + N  +++ + K      D+        K++ L
Sbjct: 1199 RELSLGLNETNSVDSYSQAQLLSQFQSMTN-PLHHLQTKLAIAFPDKSLLQYDCGKLQKL 1257

Query: 60   EVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWN-E 106
             ++++  K +    ++       L  L++             G T  +D   + + +N +
Sbjct: 1258 AILLQNLKDHGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQVLTERFNTD 1317

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +I        S G G+NL  G + ++F+   W+    +Q  +R       + G  R V 
Sbjct: 1318 PRITAFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDRC-----HRIGQTRDVH 1371

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Y  ++ +TI+  +L++   K  + ++++ 
Sbjct: 1372 IYRFVSDHTIESNILKKANQKRQLDNVVIQ 1401


>gi|219362507|ref|NP_001136611.1| hypothetical protein LOC100216734 [Zea mays]
 gi|194696362|gb|ACF82265.1| unknown [Zea mays]
          Length = 356

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 17/135 (12%)

Query: 70  PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
             IV   +   L  L+          +      +L+     ++++N + ++ ++     +
Sbjct: 203 KAIVFSQWTGMLDLLELSLNINCIQYRRLDGTMSLNLREKNVKDFNTDPEVRVMIMSLKA 262

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   LWW+     Q ++R       + G  R V V  L  ++T+++
Sbjct: 263 GNLGLNMVSACH-VILLDLWWNPYAEDQAVDR-----AHRIGQTRPVTVSRLTVKDTVED 316

Query: 179 LVLQRLRTKSTIQDL 193
            +L     K T+ + 
Sbjct: 317 RILALQEEKRTMVNS 331


>gi|115389418|ref|XP_001212214.1| hypothetical protein ATEG_03036 [Aspergillus terreus NIH2624]
 gi|114194610|gb|EAU36310.1| hypothetical protein ATEG_03036 [Aspergillus terreus NIH2624]
          Length = 1896

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            L  GA Y    +        ++K +  I++      ++ +  F             G   
Sbjct: 1667 LGTGASYVSPHRALVF---CQMKEMLDIVQSEVLKKLLPSVQFL--------RLDGGVEA 1715

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +  +N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R   
Sbjct: 1716 TRRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR--- 1771

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1772 --AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1812


>gi|68072323|ref|XP_678075.1| DNA repair protein rad54 [Plasmodium berghei strain ANKA]
 gi|56498427|emb|CAH96805.1| DNA repair protein rad54, putative [Plasmodium berghei]
          Length = 860

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--EKIKALEV 61
           Y K  ++L  + + +    + + S   + L      + ++       V +  + +  +E+
Sbjct: 516 YDKSVKKLIEECKRDVYRCYYNLSSKFQLLHFLLKTIKHETNDKVVIVSNYTQTLDYMEI 575

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
           + ++ +       Y F             G ++ K    I ++ N   I +      S G
Sbjct: 576 LCKENH-------YKFV--------RLDGGISIKKRHKVISDFTNTDDIFIFLLSSKSGG 620

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    N L+     W+    +Q + R+      + G K+  ++Y L    TIDE V
Sbjct: 621 CGINL-ISSNRLILLDPDWNPANDKQALARVW-----REGQKKICYIYRLFCTGTIDEKV 674

Query: 181 LQRLRTKSTIQDLLL 195
            QR  +K  +  +++
Sbjct: 675 YQRQISKDGLSSMIV 689


>gi|328862898|gb|EGG11998.1| hypothetical protein MELLADRAFT_76519 [Melampsora larici-populina
           98AG31]
          Length = 779

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQ----------KAFPQG 91
           E  +        ++ L+ I  +++  P   IV   F S L  ++            +   
Sbjct: 599 EGMNASTKISRLLELLDEIASESSEKPKKTIVFSQFTSFLDLIEPFIKKAKHGYARYDGA 658

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T D+    + +   + K  +L         GLNL    + +V    WW+     Q  +R
Sbjct: 659 KTADEKAEALNKIKHDPKCTVLLISLRCGSVGLNL-ICCSRVVLMDPWWNPSIESQAFDR 717

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKK 200
                  + G +  V  Y +   +TI++ +L+    K +I +  L   A KK
Sbjct: 718 -----AHRFGQRDDVKCYKITIADTIEDRILKLQEDKQSIANQALGTEAAKK 764


>gi|326476226|gb|EGE00236.1| chromodomain helicase [Trichophyton tonsurans CBS 112818]
          Length = 1558

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 792 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 850

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 851 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 909

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 910 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 951


>gi|322701606|gb|EFY93355.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Metarhizium acridum CQMa 102]
          Length = 1416

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHD----- 53
            K Y +        +        N+   +   +QL    N    +DE ++           
Sbjct: 783  KLYKQMVTHNKLVVSDGKGGKTNARGLSNMIMQLRKLCNHPFVFDEVENVMNPMSISNDL 842

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DK 96
                  K + L+ I+   +A    +++ +   + +  ++              G T  D+
Sbjct: 843  LWRTAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRKFEYLRLDGTTKSDE 902

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    K  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 903  RSDLLKEFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1001


>gi|298710164|emb|CBJ31874.1| Probable chromatin remodelling complex ATPase chain [Ectocarpus
           siliculosus]
          Length = 1485

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCT-IQEWNEGKIP--LLFAH 115
              +++       L          R +     G T  +     I  +N+      +    
Sbjct: 585 GHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPDSTKFVFMLS 644

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ   + ++ +   W+ +   Q ++R       + G KR V VY L+ +NT
Sbjct: 645 TRAGGLGINLQT-ADTVILYDSDWNPQADLQAMDR-----AHRIGQKRPVSVYRLVTENT 698

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E V++R + K  +  +++ 
Sbjct: 699 VEEKVVERAQQKLKLDAMIVQ 719


>gi|146161298|ref|XP_977122.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|146146801|gb|EAR86636.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1540

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 49   KEVHDEKIKALEVIIEKANAA--PIIVAYHF--NSDLARL---QKAFPQGRT-----LDK 96
            K +   KI A+   I+         +V   F    DL  +   +   P  R        +
Sbjct: 1365 KYIRSSKINAVMNYIQNLQKTDDKCLVFTQFLGMMDLFEIDFQKNKIPYLRLDGSVNQKQ 1424

Query: 97   DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I+ +NE  +  +      + G GLNL    N ++    WW+    +Q IER     
Sbjct: 1425 RAEIIKRFNEDSQYKVFMISLKAGGVGLNL-VKANHVLMVDPWWNPAVEEQAIERC---- 1479

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G K+ VFV   I  ++I+  +++    K  + +  + A KK+
Sbjct: 1480 -HRIGQKKEVFVTRFICDDSIESRMIKLHEEKRDLFENTIQATKKD 1524


>gi|326480845|gb|EGE04855.1| chromodomain helicase hrp3 [Trichophyton equinum CBS 127.97]
          Length = 1558

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 792 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 850

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 851 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 909

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 910 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 951


>gi|330936688|ref|XP_003305493.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
 gi|311317475|gb|EFQ86421.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
          Length = 890

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 26/163 (15%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
              K++ L+ ++ +        I++  ++ + L  +++                   K  
Sbjct: 579 SSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTLDMIERLLVSLSYTYLRLDGSTPASKRQ 638

Query: 99  CTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++++N  K P            S G GLNL  G + +V F + W+     Q + RI  
Sbjct: 639 ALVEKFN--KTPKTTSFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPATDLQAMARI-- 693

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K    VY  + Q  +DE + QR   K  + + +++
Sbjct: 694 ---HRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVD 733


>gi|189209013|ref|XP_001940839.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976932|gb|EDU43558.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 893

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 26/163 (15%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
              K++ L+ ++ +        I++  ++ + L  +++                   K  
Sbjct: 582 SSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTLDMIERLLVSLSYTYLRLDGSTPASKRQ 641

Query: 99  CTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++++N  K P            S G GLNL  G + +V F + W+     Q + RI  
Sbjct: 642 ALVEKFN--KTPKTTSFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPATDLQAMARI-- 696

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K    VY  + Q  +DE + QR   K  + + +++
Sbjct: 697 ---HRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVD 736


>gi|119173796|ref|XP_001239291.1| hypothetical protein CIMG_10313 [Coccidioides immitis RS]
          Length = 1520

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 33/176 (18%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPIIVAYHFNSDLAR 83
            ++ + E    +    +  AL  +I  +               +   +++       L  
Sbjct: 748 FMFANAEDRILQGSTRREDALRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDI 807

Query: 84  LQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           L           +             +I+ +N              + G G+NL    + 
Sbjct: 808 LADYMDARGFAYQRLDGTIAAGPRRLSIEHFNAPDSTDFAFLLSTRAGGLGINLMT-ADT 866

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++ F   W+ +   Q + R       + G  + V VY L++++T++E V++R R K
Sbjct: 867 VILFDSDWNPQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVIERARNK 917


>gi|190347873|gb|EDK40225.2| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  LE ++ +       +++       L  L           +    G    +   
Sbjct: 641 SSGKMVLLEQLLTRLRKEGHRVLIFSQMVRMLDILGDYLSIKGYAFQRLDGGIPSSQRRI 700

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 701 SIDHFNAPDSRDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 754

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++TI+E +L+R R K  ++  +++
Sbjct: 755 RIGQKNHVSVYRFVSKDTIEEEILERARKKMILEYAIIS 793


>gi|115744408|ref|XP_793154.2| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like, partial [Strongylocentrotus purpuratus]
 gi|115954708|ref|XP_001193945.1| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like, partial [Strongylocentrotus purpuratus]
          Length = 852

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 27  SKTVKCLQL---ANGAVYYD-------EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVA 74
           S     +QL    N    +D       E          K+  L+ ++         +++ 
Sbjct: 272 SLMNTLMQLRKCVNHPYIFDGVEPEPFELGEHLVDCSGKLHLLDKLLMSLWQQGHKVLLF 331

Query: 75  YHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWN-EGKIPLLFAHPASCGHGL 123
                 L  LQ              G    ++    ++ +N      +      + G GL
Sbjct: 332 SQMTRMLDILQDYLGFRGYEYERLDGSVRGEERYLAVKNFNQRDDTFVFLLSTKAGGQGL 391

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL  G + ++F    ++ +   Q   R       + G  R V +  LI +++++EL+LQR
Sbjct: 392 NL-VGADTVIFVDSDYNPQNDLQAAAR-----AHRIGQTRPVKIIRLIGRDSVEELILQR 445

Query: 184 LRTKSTIQDLLLNALK 199
              K  + + ++   K
Sbjct: 446 ADEKLKLTNDVIEGGK 461


>gi|312383001|gb|EFR28245.1| hypothetical protein AND_04056 [Anopheles darlingi]
          Length = 1726

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
               K + L+ ++ +  A+   +++   F   L  +++             G T   D  
Sbjct: 577 TSSGKFRKLDELLPQLKADGHRVLIFSQFTMMLDIMERYLKIRKHGYLRLDGSTAVTDRQ 636

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +    +  + +      + G G+NL     +++         +     ++    R  
Sbjct: 637 ELIDQYTSDPNLFVFLLSTKAGGLGINLTAADTVIIHD------IDFNPYNDKQAEDRAH 690

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K+ V +Y  I++ +I+E +++  + K  ++  +  
Sbjct: 691 RMGQKKPVTIYKFISEGSIEEGMMEIAQQKLQLEKDVTE 729


>gi|303324465|ref|XP_003072220.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111930|gb|EER30075.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037260|gb|EFW19198.1| chromodomain helicase hrp1 [Coccidioides posadasii str. Silveira]
          Length = 1520

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 33/176 (18%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPIIVAYHFNSDLAR 83
            ++ + E    +    +  AL  +I  +               +   +++       L  
Sbjct: 748 FMFANAEDRILQGSTRREDALRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDI 807

Query: 84  LQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           L           +             +I+ +N              + G G+NL    + 
Sbjct: 808 LADYMDARGFAYQRLDGTIAAGPRRLSIEHFNAPDSTDFAFLLSTRAGGLGINLMT-ADT 866

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++ F   W+ +   Q + R       + G  + V VY L++++T++E V++R R K
Sbjct: 867 VILFDSDWNPQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVIERARNK 917


>gi|255719682|ref|XP_002556121.1| KLTH0H05566p [Lachancea thermotolerans]
 gi|238942087|emb|CAR30259.1| KLTH0H05566p [Lachancea thermotolerans]
          Length = 1106

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEKH 47
            Q+  Y  +  ++++A N A+             +QL    N    +D            
Sbjct: 376 MQKRWYKQILEKDLDAVNGANGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 435

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
               +  K+K L+ ++ K     + +++    +  L  L+              G T  +
Sbjct: 436 HLVYNSAKLKVLDKLLRKFKEEGSRVLIFSQMSRLLDILEDYCFFRNYEYCRIDGSTAHE 495

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 496 DRIEAIDEYNAPDSKKFVFLLTTRAGGLGINLTT-ADVVVLYDSDWNPQADLQAMDR--- 551

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 552 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 592


>gi|222619629|gb|EEE55761.1| hypothetical protein OsJ_04298 [Oryza sativa Japonica Group]
          Length = 1129

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 24/207 (11%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           QRELY ++   N    NSA +      L  G    ++          K++ L  ++ +  
Sbjct: 781 QRELYINILERNYSKLNSAIRNG----LEVGQQATEDVFLSLIASSGKLQLLHKLLPRLK 836

Query: 68  --AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQEWNE--GKIPLLF 113
                +++       L  L         + A   G+T L     +I+E+     +  +  
Sbjct: 837 ERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQESIEEYKNIDSETFIFL 896

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G++L  G + ++ +   ++     Q       +R  + G  R V VY LI +
Sbjct: 897 MSTRAGGMGVDL-PGADRVIIYDPDFNPFMDLQA-----QSRAHRIGQTRPVVVYQLITK 950

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKK 200
            +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 951 CSVEEKILQKSKQKLAIENMLMNSSKK 977


>gi|320587466|gb|EFW99946.1| DNA repair protein rhp26 [Grosmannia clavigera kw1407]
          Length = 1202

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           F   L  +Q     G+T  KD  T+  +  N+ ++ +        G G+NL  G + ++ 
Sbjct: 779 FTQSLGDIQYLRMDGKTPIKDRQTLVDRFNNDPQLNVFLLTTKVGGLGVNLT-GADRVII 837

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+     Q  ER       + G KR V +Y L+   TI+E +  R   K  + + +
Sbjct: 838 FDPDWNPSTDVQARERAW-----RLGQKRQVTIYRLMTAGTIEEKIYHRQIFKQFLTNKV 892

Query: 195 LNALKKET 202
           L   K+  
Sbjct: 893 LKDPKQRA 900


>gi|170034779|ref|XP_001845250.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus]
 gi|167876380|gb|EDS39763.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus]
          Length = 1899

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVII--------EKA--NAAPIIVAYHFNSDLARLQK-------------AF 88
            H  K+ AL+ ++        E    N    ++     + L  ++                
Sbjct: 1651 HSAKLPALKQLLLDCGIGTNEDMSVNQHRALIFCQLKAMLDIIENDLLKKHLPAVSYLRL 1710

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G         + ++N +  I +L       G GLNL  G + ++F    W+  +  Q 
Sbjct: 1711 DGGVPPSSRHQIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQA 1769

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V VY LI + +++E ++   + K    + +++
Sbjct: 1770 MDR-----AHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLLTANTIVS 1813


>gi|71014727|ref|XP_758754.1| hypothetical protein UM02607.1 [Ustilago maydis 521]
 gi|46098544|gb|EAK83777.1| hypothetical protein UM02607.1 [Ustilago maydis 521]
          Length = 1108

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + QR+ Y  +  ++I+A N                +QL    N    +D           
Sbjct: 461 EMQRKWYKSILEKDIDAVNGGVGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 520

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                +  K+  L+ ++ K     + +++    +  L  L+               G   
Sbjct: 521 EHLVDNSGKMVILDRLLHKMKQKGSRVLIFSQMSRMLDILEDYCLFREYKYCRIDGGTAH 580

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     I E+N+   +  +      + G G+NL    +I+V F   W+ +   Q ++R  
Sbjct: 581 DDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR-- 637

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  + V+V+  + ++ I+E +L R   K  +  L++
Sbjct: 638 ---AHRIGQTKQVYVFRFVTEHAIEERILDRAAQKLRLDQLVI 677


>gi|322694140|gb|EFY85978.1| DNA repair protein Rhp26/Rad26, putative [Metarhizium acridum CQMa
           102]
          Length = 1162

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDPC 99
             K++  + +++K         ++       L  ++K             G T +D+   
Sbjct: 728 SAKLELTKDLLQKVMIPKGHKTLLFSQGKLMLNIIEKCMRECNISYLRLDGETPVDQRQP 787

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N    I +      + G G NL  G + ++ F   W+     Q  ER       +
Sbjct: 788 MIDRFNADLSIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPSTDLQARERAW-----R 841

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 842 LGQNKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 884


>gi|189190262|ref|XP_001931470.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973076|gb|EDU40575.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1273

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEVHD- 53
           K Y +     R +  D +G        ++  ++  +L N    ++E +      K  +D 
Sbjct: 693 KLYKQLVTHNRLMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEDVMNPTKGTNDL 752

Query: 54  -----EKIKALEVIIE--KANAAPIIVAYH------FNSDLARLQKAF----PQGRTLDK 96
                 K + L+ I+   +A    +++ +          D  RL+             D 
Sbjct: 753 LWRAAGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMMYLRLDGATKADD 812

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    P         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 813 RSDLLRLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 866

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 867 RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 911


>gi|218440726|ref|YP_002379055.1| non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7424]
 gi|218173454|gb|ACK72187.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7424]
          Length = 1048

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKAL 59
             Y K   +    ++            +  ++  Q+ N  A YY E          K+  L
Sbjct: 815  LYQKLVDDSLAKIEETTGIQRRGLILTLLMQLKQVCNHPAQYYKENSLDSAQRSGKLLRL 874

Query: 60   EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
            E ++E+        ++   F      LQ    +                +    I  +  
Sbjct: 875  EEMLEELVDEGDRALIFTQFAEWGKLLQPYLTKKLGRQVLFLYGATPRQQRQEMIDRFQN 934

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P+      + G GLNL    N +     WW+     Q  +R       + G K+ 
Sbjct: 935  DPAAPPIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQKQN 988

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  I   T++E +   + +K  + +  ++A
Sbjct: 989  VQVHKFICTGTLEEKINDMIESKKQLAEQTVDA 1021


>gi|170089013|ref|XP_001875729.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164648989|gb|EDR13231.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1011

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 89/233 (38%), Gaps = 45/233 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK-------------CLQLAN----------GAVYY 42
           + QR+ Y  +  ++I+A N    T K               ++            G  Y 
Sbjct: 372 EMQRKWYRSVLEKDIDAVNGGCLTGKKEGKTRLMNMVMQLRKVTCHPYLFDGAEPGPPYT 431

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
            +E   +  +  K+  L+ ++   KA  + +++    +  L  L+               
Sbjct: 432 TDEHLIQ--NSGKMVILDKLLANMKAKGSRVLIFSQMSRVLDILEDYCLFRQYKYCRIDG 489

Query: 91  GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G   +     I E+N+   +  +      + G G+NL    +I+V +   W+ +   Q +
Sbjct: 490 GTAHEDRIAAIDEYNKPGSERFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAM 548

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +R       + G  + V+V+  I + +++E +L+R   K  +  L++   + +
Sbjct: 549 DR-----AHRIGQTKQVYVFRFITEGSVEERMLERAAQKLRLDQLVIQQGRTQ 596


>gi|115387749|ref|XP_001211380.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
 gi|114195464|gb|EAU37164.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
          Length = 1192

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ +  ++E  +      ++       L  L+K                  + +   
Sbjct: 730 SGKMQVVRSLLELWRDTGHKTLLFAQHRIMLDILEKFVNSLSGINYRRMDGTTPIAQRQS 789

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N +  + L        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 790 MVDEFNKDPSLHLFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDMQARERAW-----R 843

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 844 LGQKREVTIYRLMTAGTIEEKIYHRQVFKQFLTNKILRDPKQR 886


>gi|303391164|ref|XP_003073812.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302960|gb|ADM12452.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 823

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 22/171 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
           Y ++ KH  E +  K+  L+ ++E   A  + +++    +  L  L+             
Sbjct: 341 YTND-KHIIE-NSGKMIVLDKLLESLRARGSRVLIFSQMSMMLDILEDYAMFKEYEYCRI 398

Query: 90  QGRTLDKDPC-TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  KD    I  +N    +  +      + G G+NL    + ++ F   W+ +   Q
Sbjct: 399 DGSTSYKDRTEAIDAFNAEGSEKFIFLLTTRAGGLGINLST-ADTVILFDSDWNPQMDLQ 457

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   R  + G K+ V V+ LI++NT++E ++ R   K  + D+LL  
Sbjct: 458 A-----QDRAHRIGQKKQVVVFRLISENTVEERIVYRSLQKLKLDDILLQG 503


>gi|56757896|gb|AAW27088.1| SJCHGC06070 protein [Schistosoma japonicum]
          Length = 319

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +    I++   F   L  L++                 + +    I  +N   I +    
Sbjct: 97  SEGHRILIFSQFVIMLDILEEFLRITNRRYIRMDGSTPVSERQTLIDRFNSSSIEVFLLS 156

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL  G + ++   + ++        +R    R  + G K  V V  LI++ T
Sbjct: 157 TRAGGLGINLT-GADTVIIHDIDFN-----PYNDRQAEDRCHRLGQKNPVHVIRLISEGT 210

Query: 176 IDELVLQRLRTK 187
           ++E +L+    K
Sbjct: 211 LEEGMLRIASEK 222


>gi|167516624|ref|XP_001742653.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779277|gb|EDQ92891.1| predicted protein [Monosiga brevicollis MX1]
          Length = 649

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 21/159 (13%)

Query: 52  HDEKIKA-LEVI---IEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKD------ 97
              KI+A LE +      +++   IV   F + L     RLQ+A  +   LD        
Sbjct: 478 SSTKIEAILEELRSGQSASSSIKTIVFSQFTTFLDLLEWRLQRAGIRCVKLDGRMSPQHR 537

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N +  +        + G  LNL    +  +    WW+     Q ++RI     
Sbjct: 538 ADVIEAFNTQPHLTAFLISLKAGGLALNL-VSASRCIICDPWWNPATESQAMDRI----- 591

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  R V V  LI +N+I+  + Q    K  + +  +
Sbjct: 592 HRLGQNRPVEVIRLIVENSIESRIDQLQEKKRLLFESTV 630


>gi|82705590|ref|XP_727033.1| DNA repair protein RAD54 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482686|gb|EAA18598.1| DNA repair protein RAD54-like-related [Plasmodium yoelii yoelii]
          Length = 1163

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
             K + L  +   I++     +++  ++   L  ++               G ++ K   
Sbjct: 659 SSKFQLLHFLLKTIKQETNDKVVIVSNYTQTLDYMEILCRENYYKFVRLDGGISIKKRHK 718

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++ N   I +      S G G+NL    N L+     W+    +Q + R+      +
Sbjct: 719 VISDFTNTDDIFIFLLSSKSGGCGINL-ISSNRLILLDPDWNPANDKQALARVW-----R 772

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+  ++Y L    TIDE V QR  +K  +  +++
Sbjct: 773 EGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSSMIV 809


>gi|312220152|emb|CBY00094.1| similar to DNA repair protein Rhp26/Rad26 [Leptosphaeria maculans]
          Length = 1224

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++   K      ++       L  LQK                  + +   
Sbjct: 756 SGKMQVVKELLSLWKKGGHKTLLFAQHRIMLDILQKFVSHLPGINWRRMDGETPIKERQN 815

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G N ++ +   W+     Q  ER       +
Sbjct: 816 LVDEFNNNPDLDVFLLTTKVGGLGVNLT-GANRVIIYDPDWNPSTDIQARERSW-----R 869

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L++  TI+E +  R   K  + + +L   K+ 
Sbjct: 870 LGQKREVEIYRLMSAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 912


>gi|294925765|ref|XP_002778999.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239887845|gb|EER10794.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1105

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
               D+E +   +   K+  L+ ++ K  A    +++   F S L  +Q+          
Sbjct: 582 CQNKDQEFNRMIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVE 641

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 T       I  +N  +    L      + G G+NL    ++++ F   W+ +  
Sbjct: 642 RLDGSATAKAREEAIDRFNTPESSAFLFLLSTRAGGIGINLT-AADVVIIFDSDWNPQMD 700

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q   R       + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 701 IQATAR-----AHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 747


>gi|70943600|ref|XP_741826.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520453|emb|CAH80960.1| hypothetical protein PC000341.04.0 [Plasmodium chabaudi chabaudi]
          Length = 154

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
           ++   + S L  ++    +   +            ++       N+ ++ +L     + G
Sbjct: 5   LIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMVSRNNILYNFNNDKQLRVLLISLKAGG 64

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N +     WW+     Q I+R       + G  + V+    I +NT++E +
Sbjct: 65  EGLNLQV-ANRIFIVDPWWNPAAELQAIQR-----AHRIGQTKTVYAIRFIIENTVEEKI 118

Query: 181 LQRLRTKSTIQDLLL 195
           +Q    K  + D  +
Sbjct: 119 IQLQNKKQLVFDCTI 133


>gi|296813433|ref|XP_002847054.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
           113480]
 gi|238842310|gb|EEQ31972.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
           113480]
          Length = 1233

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  +      ++       L  L++                  +     
Sbjct: 736 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIRGFDRFNYRRMDGNTPIKVRQT 795

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 796 MVDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 849

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|224001126|ref|XP_002290235.1| hypothetical protein THAPSDRAFT_268889 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973657|gb|EED91987.1| hypothetical protein THAPSDRAFT_268889 [Thalassiosira pseudonana
           CCMP1335]
          Length = 716

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 27/165 (16%)

Query: 52  HDEKIKAL-EVII---EKANAAPIIVAYHFNSDLARLQ----------------KAFPQG 91
              KI+AL + ++   + +  +  IV   F + L  ++                +A   G
Sbjct: 538 TSSKIEALTQELVMMRQMSPGSKAIVFSQFTNMLDLIRWRLHSDPYLEDIGLGCRALHGG 597

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +      ++E+  +  + +L     + G  LNL    N +     WW+     Q I+R
Sbjct: 598 MNVKARDICLKEFREDNNVRVLLMSLKAGGVALNLTC-ANYIYLIDPWWNPAAEMQAIDR 656

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G  R +     IA+NT++E +LQ    K  + D  +
Sbjct: 657 -----THRLGQYRPIRAIRFIAENTVEERILQLQEKKRLVFDGTI 696


>gi|171915261|ref|ZP_02930731.1| helicase, Snf2 family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 914

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 23/176 (13%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFP-- 89
           ++  + Y  +++        K+  L  ++E  +A P   II+   + + L  ++      
Sbjct: 605 MSANSTYLVDKQSP--GFSSKLDRLAELLEALSAEPERKIILFTEWTTMLNLIEPILERL 662

Query: 90  ---------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    Q     +     +     K  +      +   GLNLQ   + ++   L W+
Sbjct: 663 KMDFVRLDGQVAQKKRQALVSEFQGNPKCRVFLT-TNAGSTGLNLQ-AADTVINVDLPWN 720

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +Q I R       + G KR V V+ L+ + TI+E +L  L  K  +   +L+
Sbjct: 721 PALLEQRIAR-----AHRMGQKRKVQVHLLVTEGTIEENLLATLGAKHELASAVLD 771


>gi|313238906|emb|CBY13901.1| unnamed protein product [Oikopleura dioica]
          Length = 769

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 23/215 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKA 58
           + Y   ++        +      + +     +QL    N       E         K + 
Sbjct: 226 QLYKHMKQGYMLMDTNDKKNKSGNKALMNTIMQLRKICNHPFITTCEGVPLVRAAGKFEL 285

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWN- 105
           ++ I+ K  A    +++       +  ++  F           G T  D     ++++N 
Sbjct: 286 MQRILPKMKATGHKVLIFTQMTQAILLMEDYFNFYGYKYLRLDGSTKADDRGELLKKFNA 345

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G GLNLQ   + ++ F   W+  +  Q        R  + G K  
Sbjct: 346 VNSDYDVFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIGQKNE 399

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V V   +   +++E +L   R K T+ + ++ A K
Sbjct: 400 VRVLRFVTSQSVEERILAAARYKLTVDEKVIQAGK 434


>gi|330840974|ref|XP_003292481.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
 gi|325077256|gb|EGC30980.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
          Length = 928

 Score = 96.2 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD-KDPCTIQEWNEGK 108
           L  I +  +   +++  ++   L  L               G T + K    +  +N+ K
Sbjct: 620 LTKIRDSKSGDKVVIISNYTQTLEVLAIMCKTRGYAYFQLDGSTPNAKRQQLVDLYNDPK 679

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            P         + G GLNL  GGN LV F   W+     Q + R+      + G K+ V 
Sbjct: 680 RPEFAFLLSSKAGGVGLNL-IGGNHLVLFDADWNPANDAQSMARVW-----REGQKKVVS 733

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Y      TI+E + QR  TK  +   +   
Sbjct: 734 IYRTFTTGTIEEKIFQRQLTKQALSTSITEG 764


>gi|189235501|ref|XP_969437.2| PREDICTED: similar to lodestar CG2684-PA [Tribolium castaneum]
          Length = 1103

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
           + E   A N A++ V   + + G +         E    KI+AL  +++   +     IV
Sbjct: 653 EEEPRVAANLANEGVGLKEASKGYLNPTNPVFMTERPSSKIRALINLLKNKISGEDKAIV 712

Query: 74  AYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGH 121
              + S L  +            +      + K    +  +N+      +L     + G 
Sbjct: 713 VSQWTSLLHLVAIHLENEGIPYASLDGSVVVQKRMPIVDNFNDPNSATKVLLLSLTAGGV 772

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N L    L W+ +   Q  +RI      + G K+ ++VY  +A  TI+E + 
Sbjct: 773 GLNL-VGANHLFLLDLHWNPQLENQAQDRI-----YRMGQKKDIYVYKFMALETIEERIK 826

Query: 182 QRLRTKSTIQDLLLNALKKET 202
                K  I + +L   K+ T
Sbjct: 827 ALQERKLEIANAMLTGSKQVT 847


>gi|156847675|ref|XP_001646721.1| hypothetical protein Kpol_1023p32 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117401|gb|EDO18863.1| hypothetical protein Kpol_1023p32 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1178

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 27/163 (16%)

Query: 53   DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTL 94
              KI+AL    +VI +++    I++   F+S L  L++               F    +L
Sbjct: 1002 SAKIEALLKHLKVIQDQSAGEQIVIFSQFSSYLDILEQDLNEALSTKETIIYKFDGRLSL 1061

Query: 95   DKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    ++E+      K  +L     + G GLNL    +  +    WW      Q I+RI
Sbjct: 1062 KERSTVLKEFTTKDLTKQKILLLSLKAGGVGLNLTCSSHAFMM-DPWWSPSMEDQAIDRI 1120

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                  + G    V V   I Q +I+E +L+    K TI + +
Sbjct: 1121 -----HRIGQSSNVKVVRFIVQGSIEEKMLKIQERKRTIGEAM 1158


>gi|145539209|ref|XP_001455299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423098|emb|CAK87902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1741

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGR-------------TLDKDPCTIQEWNE-GKIPLLFAH 115
             ++V   F + L  + +   + +               ++    + ++NE   I +L   
Sbjct: 1543 KVLVFSRFRAALQLIAEQLLKAQFPGLQYLILDGSVPQNQRYPLVTKFNEDPDIRVLLLT 1602

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL    NI++ F   ++    QQ ++R       + G K  V V+ LI ++T
Sbjct: 1603 TQVGGLGLNL-SSANIVIMFDHDYNPVNDQQAMDR-----AHRIGQKNVVQVFRLIVKDT 1656

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E ++   R KS I   ++N
Sbjct: 1657 LEEKIMGIQRFKSAISKAIVN 1677


>gi|326485451|gb|EGE09461.1| DNA repair and recombination protein RAD26 [Trichophyton equinum
           CBS 127.97]
          Length = 1035

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
             K++ ++ ++E  K      ++       L  L++                  +     
Sbjct: 546 SGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQS 605

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +        G G+NL  G + ++ +   W+     Q  ER       +
Sbjct: 606 MVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 659

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 660 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 702


>gi|313221625|emb|CBY36111.1| unnamed protein product [Oikopleura dioica]
          Length = 1267

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP--- 89
            ++AN A+  D +         K++ L  +++      I++       L  + K      
Sbjct: 391 RRMANNAI-KDIDLDLLLSESGKMQVLADLVDAIIPEKILIFSQSIKILDIIAKILDDKT 449

Query: 90  --------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   + +   +D    +  ++ +I +          GL L      ++ +   W+ 
Sbjct: 450 VNFIRMDGKDKLPIRDEKVKRFQSDKRIKVFMLTTGVGAVGLTLT-AATRVIVYDPDWNP 508

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q ++R       + G  R V V+ LI   TI+E +  R   K +I
Sbjct: 509 GRDDQAVDR-----AYRIGQTRPVVVFRLITCETIEEKIYSRQLFKKSI 552


>gi|242056785|ref|XP_002457538.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor]
 gi|241929513|gb|EES02658.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor]
          Length = 1208

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +E +++  K     +++       L  L+          +         +    
Sbjct: 734 SGKMKVVEQVLKVWKDQGHRVLLFTQTQQMLDILENFLTACDYQYRRMDGLTPAKQRMAL 793

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N   +I +        G G NL  G N ++ +   W+     Q  ER       + 
Sbjct: 794 IDEFNNTDEIFVFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDMQARERAW-----RI 847

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  R V VY LI + TI+E V  R   K  + + +L
Sbjct: 848 GQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVL 883


>gi|255947258|ref|XP_002564396.1| Pc22g03550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591413|emb|CAP97643.1| Pc22g03550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1454

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 73/171 (42%), Gaps = 20/171 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT 93
              H       K++ L +++ +  A    +++   F  +L           L+     GR 
Sbjct: 947  SHHRLVEASGKLRLLNLMLPQLRARGHRVLIFSQFLENLDIVEDFLAGLELKYRRLDGRM 1006

Query: 94   LDKDPC-TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++   +I E+N    P         S G G+NL    + ++     ++ ++  Q + R
Sbjct: 1007 SSREKQKSIDEFNAPDSPFFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPKQDMQALSR 1065

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   + G K  V V++L+ + +++E ++Q+ ++K  +  +L++ ++ +
Sbjct: 1066 -----AHRIGQKNTVLVFHLVVRASVEEKIMQKGKSKMALDHVLIDRIEAD 1111


>gi|253742393|gb|EES99228.1| Chromodomain helicase-DNA-binding protein, putative [Giardia
            intestinalis ATCC 50581]
          Length = 2636

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 77/201 (38%), Gaps = 29/201 (14%)

Query: 19   NIEAFNSASKTVKCLQL---ANGA-VYYDEEKHWKEVHD-----EKIKALEVIIEKAN-- 67
              +++NS       +QL    N   + +D + H   + D      K + L+ +++K N  
Sbjct: 1536 TAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTASLKDMVDGSGKFQVLDKLLDKLNSE 1595

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++       L  L+          +      T ++    I  +NE   K  +    
Sbjct: 1596 GHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKNSKDFIFLLS 1655

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    + ++ F   ++ +   Q   R+      + G  + V +Y L+ +++
Sbjct: 1656 TRSGGQGINL-ATADTVIIFDADYNPQNDLQAAGRV-----HRIGQSKPVTIYRLVTRDS 1709

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E +L     K  +   ++ 
Sbjct: 1710 VEERILDIGHRKLMLDYAIIQ 1730


>gi|322707206|gb|EFY98785.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Metarhizium anisopliae ARSEF 23]
          Length = 1416

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHD----- 53
            K Y +        +        N+   +   +QL    N    +DE ++           
Sbjct: 783  KLYKQMVTHNKLVVSDGKGGKTNARGLSNMIMQLRKLCNHPFVFDEVENVMNPMSISNDL 842

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DK 96
                  K + L+ I+   +A    +++ +   + +  ++              G T  D+
Sbjct: 843  LWRTAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRKFEYLRLDGTTKSDE 902

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    K  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 903  RSDLLKEFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1001


>gi|296415159|ref|XP_002837259.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633120|emb|CAZ81450.1| unnamed protein product [Tuber melanosporum]
          Length = 1362

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 81/226 (35%), Gaps = 34/226 (15%)

Query: 2   KQYHKFQRELYCDL----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           K Y +        +    +G  +     ++  ++  +L N    ++E +           
Sbjct: 732 KLYQQMMNNGILYVNEPDKGGKLGVRGLSNMIMQLRKLCNHPFVFEEVESAINPTKVNND 791

Query: 58  ALE------VIIEK------ANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-D 95
           AL        ++++      A    +++ +     +  +         +     G T  D
Sbjct: 792 ALWRTAGKFELLDRLLPKFFATRHRVLMFFQMTQIMNIMEDFLHLRGFRYLRLDGSTKAD 851

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                ++E+N    P  +      + G GLNLQ   + ++ +   W+  +  Q       
Sbjct: 852 DRSALLKEFNAPDSPYFIFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----Q 905

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R + K  I   ++ A K
Sbjct: 906 DRAHRIGQKNEVRILRLITSNSVEERILERAQYKLDIDGKVIQAGK 951


>gi|326670150|ref|XP_689596.5| PREDICTED: hypothetical protein LOC553504 [Danio rerio]
          Length = 1269

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 25/169 (14%)

Query: 30  VKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           +K +Q L N  +   ++     +  + +  LE                       L+   
Sbjct: 444 MKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYC----------------MAEGLEYHR 487

Query: 89  PQGRTLDKDP-CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  KD    ++E+N    + L      + G GLN   G N++V F   W+     Q
Sbjct: 488 LDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQ 546

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 547 AIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 590


>gi|212534786|ref|XP_002147549.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069948|gb|EEA24038.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1115

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 423 DMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ I+ +     + +++    +  L  L         +     G T
Sbjct: 483 EHLV--DNSGKMVVLDKILNRMKKQGSRVLIFSQMSRVLDILEDYCVFREHKYCRIDGST 540

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 541 AHEDRIAAIDEYNKEGSDKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G K+ V V+  + ++ I+E VL+R   K  +  L++   + +
Sbjct: 600 -----AHRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVIQQGRAQ 645


>gi|254572878|ref|XP_002493548.1| Swi2/Snf2-related ATPase that is the structural component of the SWR1
            complex [Pichia pastoris GS115]
 gi|238033347|emb|CAY71369.1| Swi2/Snf2-related ATPase that is the structural component of the SWR1
            complex [Pichia pastoris GS115]
 gi|328354627|emb|CCA41024.1| helicase SWR1 [Pichia pastoris CBS 7435]
          Length = 1583

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 19/176 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF--- 88
            QL         +K   +    K++ L  ++ +  +N    ++       L  L++     
Sbjct: 1282 QLQTKLSIAFPDKSLLQYDCGKLQKLASLLLELKSNGHRALIFTQMTKVLDILEQFLNIQ 1341

Query: 89   ------PQGRTLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    G T  +D   + + +N+   I        S G G+NL  G + ++F+   W+
Sbjct: 1342 GYRYMRLDGATKIEDRQVLTERFNKDDRITCFILSTRSGGLGINLT-GADTVIFYDSDWN 1400

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +Q  +R       + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 1401 PAMDKQCQDRC-----HRIGQTRDVHIYRFVSEYTIESNILKKANQKRQLDNVIIQ 1451


>gi|218187342|gb|EEC69769.1| hypothetical protein OsI_00025 [Oryza sativa Indica Group]
 gi|222617568|gb|EEE53700.1| hypothetical protein OsJ_00022 [Oryza sativa Japonica Group]
          Length = 1355

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
              K+K +E +++  K     +++       L  ++          +         +    
Sbjct: 880  SGKMKVVEQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMAL 939

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E+N   +I +        G G NL  G N ++ +   W+     Q  ER       + 
Sbjct: 940  IDEFNNTDEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDMQARERAW-----RI 993

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  R V VY LI + TI+E V  R   K  + + +L
Sbjct: 994  GQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVL 1029


>gi|297202132|ref|ZP_06919529.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148045|gb|EDY57603.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 747

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 34/199 (17%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A Y   EK        K+  L  I+ +A  N    
Sbjct: 519 ELSASDEEAYREAVRAGNFMAMRRAA-YLRPEK------SAKLDRLLEIVREAGENGQKT 571

Query: 72  IVAYHFNSDLARLQKAFPQGRT--------------LDKDPCTIQEWNEGKIP---LLFA 114
           +V  HF   L  +++A     T                +    + ++    +P   +L A
Sbjct: 572 VVFSHFKDVLNVVREALATAHTDGTALFGPLTGSVPAGRRQQMVDDF--ADVPGPAVLVA 629

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+Q   +++V            Q + R       + G  R V VY L+A  
Sbjct: 630 QIQAAGVGLNMQ-AASVVVICEPQIKPTIEHQAVAR-----AHRMGQVRPVRVYRLLATG 683

Query: 175 TIDELVLQRLRTKSTIQDL 193
            +DE +++ L TK+ + D 
Sbjct: 684 GVDERLVKLLETKTRLFDA 702


>gi|156049585|ref|XP_001590759.1| hypothetical protein SS1G_08499 [Sclerotinia sclerotiorum 1980]
 gi|154692898|gb|EDN92636.1| hypothetical protein SS1G_08499 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 915

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 24/155 (15%)

Query: 53  DEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL-------------DK 96
             K +AL  II+  +  P   +++   + S L  +QK   Q                 DK
Sbjct: 741 SSKTEALMQIIKVTHNDPLSKVVIFSQWTSFLNIIQKQLEQSGIKFARIDGSMTAPQRDK 800

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +++   + +  +L A  A C  GLNL    + ++    WW      Q ++R+     
Sbjct: 801 GMQSLES--DPECRVLLASLAVCSVGLNL-VSADTVILADSWWAPAIEDQAVDRV----- 852

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + G KR   V+ L+ + +I+E VL+    K  + 
Sbjct: 853 YRLGQKRDCKVWRLVMEGSIEERVLEIQGEKRKLA 887


>gi|115944263|ref|XP_001189861.1| PREDICTED: similar to LD32234p, partial [Strongylocentrotus
           purpuratus]
          Length = 2083

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQ 102
           K++ ++ ++ K     + +++       L  L++             G T  +     ++
Sbjct: 758 KLQTMDGLLRKLKTEGSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMME 817

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N + +I        S G G+NL  G N ++F+   W+     Q  +R       + G 
Sbjct: 818 RFNKDPRIFCFILSTRSGGMGVNLT-GANAVIFYDSDWNPTMDAQAQDRC-----HRIGQ 871

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y LI++ +I+E +L++   K  + D+ +  
Sbjct: 872 TRDVHIYRLISEMSIEENILKKSNQKRLLIDVSIEG 907


>gi|115678452|ref|XP_788939.2| PREDICTED: similar to LD32234p, partial [Strongylocentrotus
           purpuratus]
          Length = 2021

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQ 102
           K++ ++ ++ K     + +++       L  L++             G T  +     ++
Sbjct: 696 KLQTMDGLLRKLKTEGSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMME 755

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N + +I        S G G+NL  G N ++F+   W+     Q  +R       + G 
Sbjct: 756 RFNKDPRIFCFILSTRSGGMGVNLT-GANAVIFYDSDWNPTMDAQAQDRC-----HRIGQ 809

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V +Y LI++ +I+E +L++   K  + D+ +  
Sbjct: 810 TRDVHIYRLISEMSIEENILKKSNQKRLLIDVSIEG 845


>gi|325087704|gb|EGC41014.1| TBP associated factor [Ajellomyces capsulatus H88]
          Length = 1756

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            KQY + Q+ L       +I     A K +    L       D         + ++     
Sbjct: 1478 KQYDEIQKSLAAK--NSHIRDVAHAPKLIALRDL-----LVDCGIGVDPSTEGELDTGAS 1530

Query: 62   IIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLD--------KDPCTIQEWN-EG 107
             +        +V       L       L+K  P  + L         K    + ++N + 
Sbjct: 1531 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDP 1587

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1588 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1641

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1642 YRLITRGTLEEKILNLQRFKIDVASTVVN 1670


>gi|254574520|ref|XP_002494369.1| Catalytic subunit of the SWI/SNF chromatin remodeling complex
            involved in transcriptional regulation [Pichia pastoris
            GS115]
 gi|238034168|emb|CAY72190.1| Catalytic subunit of the SWI/SNF chromatin remodeling complex
            involved in transcriptional regulation [Pichia pastoris
            GS115]
 gi|328353801|emb|CCA40198.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 2/4 [Pichia pastoris CBS
            7435]
          Length = 1649

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 33/226 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVH----- 52
            +K Y +  +     +  E+ +         K +QL    N    ++E ++          
Sbjct: 998  IKLYEQMLKYNQLFVGDESKKPIGVKGLNNKLMQLRKICNHPFVFEEVENLINPTRETNN 1057

Query: 53   -----DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLARLQ---KAFPQGRTLDK 96
                   K + L+ I+ K  A    +++ +          D  RL+        G T   
Sbjct: 1058 NIWRVSGKFELLDRILPKFKATGHRVLIFFQMTQIMDIMEDFLRLRDMKYLRLDGATKSD 1117

Query: 97   DPCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D    ++ +N              + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 1118 DRQDMLRLFNAEGSDYFAFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----Q 1171

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++I+E++L +   K  I   ++ A +
Sbjct: 1172 DRAHRIGQKNEVRILRLITEDSIEEVILSKAYEKLDIDGKVIQAGR 1217


>gi|308800854|ref|XP_003075208.1| Cockayne syndrome group B (ISS) [Ostreococcus tauri]
 gi|116061762|emb|CAL52480.1| Cockayne syndrome group B (ISS) [Ostreococcus tauri]
          Length = 1134

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            N      +  Q A+   Y D  +  K     K+ +L     +      +V       L 
Sbjct: 633 VNHPDLLERRTQAASEE-YGDASRSGKLQVTLKVLSLW----REQGHRCLVFSQTQQMLD 687

Query: 83  RLQKAFPQG----RTLDKDPCT------IQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
            L+ A  +     R +D +         I E+N+    I +        G G+NL  G N
Sbjct: 688 ILEAAVARAGYSYRRMDGNTSIGMRMSLIDEFNDNDKGIFVFLLTTKVGGLGVNLT-GAN 746

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ F   W+     Q  ER       + G ++ V VY LI   TI+E V  R   K  +
Sbjct: 747 RVMLFDPDWNPSTDAQARERAW-----RIGQQKEVTVYRLITAGTIEEKVYHRQIYKEFL 801

Query: 191 QDLLLNALKKE 201
              +L   K+ 
Sbjct: 802 TSKVLKDPKQR 812


>gi|322494672|emb|CBZ29974.1| putative DNA-dependent ATPase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1098

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 41/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFN-----SASKTVK---CLQLANGAVYYDEEKH-WKEVHDEKI 56
           K QRE Y ++  ++ E  N      AS T       ++ N     D  +     V DEK+
Sbjct: 407 KKQREWYMNVLAKDAEVLNKAGGSVASLTNAMMSLRKVINHPYLMDGGEEGPPFVTDEKL 466

Query: 57  -----------KALEVIIEKANAA-PIIVAYHFNSDLARLQ---------KAFPQGRT-- 93
                      K L  +         +++   F S L  L+              G T  
Sbjct: 467 VRTSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSG 526

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            D+D   +  +N       +      + G G+NLQ   N ++ +   W+ +   Q     
Sbjct: 527 YDRDSQ-MASFNSPSSDYFIFLLSTRAGGLGINLQ-AANHVILYDSDWNPQMDLQA---- 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G KR+V VY  +   T++E + +R   K  +  +++ 
Sbjct: 581 -QDRAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQ 624


>gi|315055153|ref|XP_003176951.1| TATA-binding protein-associated factor MOT1 [Arthroderma gypseum CBS
            118893]
 gi|311338797|gb|EFQ97999.1| TATA-binding protein-associated factor MOT1 [Arthroderma gypseum CBS
            118893]
          Length = 1906

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1676 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1724

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1725 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1781

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1782 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1822


>gi|304406559|ref|ZP_07388215.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344617|gb|EFM10455.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 1044

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSD----------LARLQKAFPQGRTLDK-DPC 99
              K++ L  ++++        ++   +               + Q  +  G T       
Sbjct: 862  SSKLERLLAMVKELREEGDRCLIFTQYIGMGNMLQQVLQNQLQEQVLYLNGSTSKTARDR 921

Query: 100  TIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             I+++    +P      +      + G GLNL    N +  F  WW+     Q  +R   
Sbjct: 922  MIEQFQSQTLPADEQPNVFILSIKAGGVGLNLT-AANHVFHFDRWWNPAVENQATDR--- 977

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  R V V+  IA  T++E + + L +K  + D ++ +
Sbjct: 978  --AYRMGQTRDVQVHKFIALGTLEEKIDEMLESKQRLSDDVITS 1019


>gi|291236092|ref|XP_002737975.1| PREDICTED: predicted protein-like, partial [Saccoglossus
           kowalevskii]
          Length = 759

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +  R+    P    ++     + E+N+ K + +      + G GLN+  G NI++ F   
Sbjct: 15  EYRRIDGKTPGPVRMN----YVHEFNQDKSVSVCLISTKAGGLGLNMT-GANIVIIFDPN 69

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+    QQ        R  + G +R V VY LI+  TI+E +  R   K  I   L+++
Sbjct: 70  WNPAHDQQA-----QDRAYRIGQQRDVKVYRLISSGTIEENMYLRQIYKQQIASTLVSS 123


>gi|218189474|gb|EEC71901.1| hypothetical protein OsI_04668 [Oryza sativa Indica Group]
          Length = 1105

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 24/207 (11%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           QRELY ++   N    NSA +      L  G    ++          K++ L  ++ +  
Sbjct: 786 QRELYINILERNYSKLNSAIRNG----LEVGQQATEDVFLSLIASSGKLQLLHKLLPRLK 841

Query: 68  --AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQEWNE--GKIPLLF 113
                +++       L  L         + A   G+T L     +I+E+     +  +  
Sbjct: 842 ERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQESIKEYKNIDSETFIFL 901

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G++L  G + ++ +   ++     Q       +R  + G  R V VY LI +
Sbjct: 902 MSTRAGGMGVDL-PGADRVIIYDPDFNPFMDLQA-----QSRAHRIGQTRPVVVYQLITK 955

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKK 200
            +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 956 CSVEEKILQKSKQKLAIENMLMNSSKK 982


>gi|197261380|ref|YP_002154196.1| putative helicase [Pseudomonas phage LBL3]
 gi|197244470|emb|CAR31205.1| putative helicase [Pseudomonas phage LBL3]
          Length = 519

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 87/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQE 103
                LE ++E+     II+      ++ +++              G T + +    I +
Sbjct: 360 VFTDLLEGLLEEDQERSIIIWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q        R  + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLT-AADVAIYYTTDEDNELRMQ-----SEDRNHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQTSLEWKRNLASYVVDGV 508


>gi|171683845|ref|XP_001906864.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941883|emb|CAP67535.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1062

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KAF 88
            Y  +         + I+ L+ I E       I+   + S L  ++            +  
Sbjct: 876  YLRDNWEDSAKVTQVIELLKTIQETNEKT--IIFSQWTSLLDLIECQIKYSLKLRHCRYT 933

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                   +D          +  ++     +   GLNL    + ++    +W+     Q +
Sbjct: 934  GDMSRTHRDEAVQDFVENPENKVMLVSLRAGNAGLNLTC-ASRVIICDPFWNPFIEMQAV 992

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +R       + G ++ V V+ ++ + T+++ ++     K  + +  L+  K + + 
Sbjct: 993  DR-----AHRIGQQKEVQVHRILVKETVEDRIMDLQEKKRELVESALDEDKSKQLG 1043


>gi|254578924|ref|XP_002495448.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
 gi|238938338|emb|CAR26515.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
          Length = 1478

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +        ++   
Sbjct: 700 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSNQRRI 759

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 760 SIDHFNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 813

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 814 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 852


>gi|296815930|ref|XP_002848302.1| chromodomain helicase hrp3 [Arthroderma otae CBS 113480]
 gi|238841327|gb|EEQ30989.1| chromodomain helicase hrp3 [Arthroderma otae CBS 113480]
          Length = 1524

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 764 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 822

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 823 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 881

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 882 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 923


>gi|219120392|ref|XP_002180935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407651|gb|EEC47587.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 970

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 36/222 (16%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEVHD---- 53
           + Y K    L  DL      +   N  +     +QL    G  Y  E    + +      
Sbjct: 392 QLYKKL---LLRDLDSITGKVSGKNRTAVLNIVMQLRKCCGHPYLFEGVEDRTLDPLGEH 448

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDK 96
                 K+  ++ ++++     + +++       L  L         Q     G T  D 
Sbjct: 449 LVENCGKLSMVDKLLKRLKSRGSRVLIFTQMTRVLDILEDFMVMRGYQYCRIDGNTNYDD 508

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +I E+N              + G G+NLQ   +  + +   W+ ++  Q  +R    
Sbjct: 509 RESSIDEFNREGTDKFCFLLSTRAGGLGINLQT-ADTCILYDSDWNPQQDLQAQDRC--- 564

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+ L+++NT++E +++R + K  +  +++ 
Sbjct: 565 --HRLGQKKPVNVFRLVSENTVEEKIVERAQQKLKLDAMVVQ 604


>gi|195436975|ref|XP_002066420.1| GK18104 [Drosophila willistoni]
 gi|194162505|gb|EDW77406.1| GK18104 [Drosophila willistoni]
          Length = 842

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 34  QLANGAVYYDEEKHWKEVHDE-KIKALEVIIEKA--NAAPIIVAYHFNSDLA------RL 84
           QL N    YD +     + D  K   L+ I+ K       +++   F   L       R+
Sbjct: 627 QLCNKYQLYDVKIPDHLIVDSGKFSYLDKILPKLREEGHRVLLFSQFTMMLDIVEEYLRI 686

Query: 85  QKA----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +K        G  + +    I ++N +  I +      + G G+NL      ++   + +
Sbjct: 687 RKHGFCRLDGGTAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTAADTCIIH-DIDF 745

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +    +Q  +R       + G  R V +Y LI+++TI+E +L     K  ++  +
Sbjct: 746 NPYNDKQAEDRC-----HRMGQMRPVSIYRLISESTIEEGILMAAEEKLKLEKDI 795


>gi|281211860|gb|EFA86022.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1897

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLA-----RLQKAFPQGRTLDKDPCT--------IQEWN-EGKIPLLFA 114
              +++     S L       L+   P    L  D  T        + ++N +  I LL  
Sbjct: 1682 HRVLIFAQMKSMLDVVETDLLKHHMPSVTYLRMDGSTDPMKRHSIVNQFNSDPSIDLLLL 1741

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI   
Sbjct: 1742 TTHVGGLGLNLT-GADTVIFLEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITAG 1795

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   R K  I + ++N
Sbjct: 1796 TLEEKIMGLQRFKLNIANTIVN 1817


>gi|150864093|ref|XP_001382790.2| ATPase/DNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|149385349|gb|ABN64761.2| ATPase/DNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1127

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------- 89
            +Y  +           I  L  I +      +IV   F+S L  L+              
Sbjct: 941  IYLYDPDKSSSKIQALITHLRTIRDSNPGEKVIVFSQFSSYLDILENELKIQGGRDFVIH 1000

Query: 90   --QGRT-LDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               GR  L +    + ++N+      + +L     + G GLNL    +       WW   
Sbjct: 1001 KFDGRLQLSERQKVLDKFNDNTGHDGVTILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1059

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+RI      + G    V V   I  N+I+  +L+    K  I +++
Sbjct: 1060 VEDQAIDRI-----HRIGQNETVKVVRFIMSNSIETKMLKIQERKKQIGEIV 1106


>gi|310791634|gb|EFQ27161.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1893

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 37/177 (20%)

Query: 51   VHDEKIKALEVII--------EKANAAPI---------IVAYHFNSDLARLQK------- 86
            VH  K+ AL  ++        E  +  P+         +V       L  +Q        
Sbjct: 1634 VHAPKLTALRDLLVDCGIGVEEAESNDPLYQPIKPHRALVFCQMKEMLDMVQNTVLKSML 1693

Query: 87   ------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      G   +K    + ++N +    +L    +  G GLNL  G + ++F    W
Sbjct: 1694 PGVTYLRLDGGVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDW 1752

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + ++  Q ++R       + G K+ V VY L+ + T++E +L   R K  +   ++N
Sbjct: 1753 NPQKDMQAMDR-----AHRIGQKKVVNVYRLVTRGTLEEKILSLQRFKIDVASTVVN 1804


>gi|326478381|gb|EGE02391.1| TATA-binding protein-associated factor MOT1 [Trichophyton equinum CBS
            127.97]
          Length = 1912

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1682 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1730

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1731 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1787

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1788 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1828


>gi|302307681|ref|NP_984405.2| ADR309Wp [Ashbya gossypii ATCC 10895]
 gi|299789116|gb|AAS52229.2| ADR309Wp [Ashbya gossypii ATCC 10895]
          Length = 1486

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K+++L V++ +        ++       L  L++             G 
Sbjct: 1207 PDKSLLQYDCGKLQSLAVLLRRLKEEGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGA 1266

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + +I +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1267 TKIEDRQILTERFNTDPRITVFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1325

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1326 C-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNIVIQ 1366


>gi|190345850|gb|EDK37807.2| hypothetical protein PGUG_01905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 761

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 47  HWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDK 96
                +  KI+ L+ +I E      +++   F   L  L               G T  +
Sbjct: 502 EVFYKNSAKIQVLDQLINELLPDHKLLIFSQFTKMLDLLHDWLDFKNIGFCRLDGSTSHE 561

Query: 97  DPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D  T I ++N  K   +      + G G+NL    + +V F   W+ +   Q I+R+   
Sbjct: 562 DRDTQIDQFNTDKSKKVFLLSTRAGGLGINLT-AADTVVIFDNDWNPQVDLQAIDRV--- 617

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V +Y  + +N+++E+++ +  +K  ++ L++ 
Sbjct: 618 --HRIGQKKPVKIYRFLIKNSVEEILISKSYSKRFLEKLVIQ 657


>gi|326473865|gb|EGD97874.1| TBP associated factor Mot1 [Trichophyton tonsurans CBS 112818]
          Length = 1905

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1675 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1723

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1724 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1780

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1781 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1821


>gi|55959598|emb|CAI12731.1| transcription termination factor, RNA polymerase II [Homo sapiens]
          Length = 143

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 84  LQKAFPQGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L  A   G    K     ++ +N  + P ++     + G GLNL  GGN L    + W+ 
Sbjct: 15  LTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNP 73

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 74  SLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 124


>gi|302666050|ref|XP_003024628.1| hypothetical protein TRV_01197 [Trichophyton verrucosum HKI 0517]
 gi|291188693|gb|EFE44017.1| hypothetical protein TRV_01197 [Trichophyton verrucosum HKI 0517]
          Length = 1911

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1681 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1729

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1730 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1786

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1787 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1827


>gi|237831501|ref|XP_002365048.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii ME49]
 gi|211962712|gb|EEA97907.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii ME49]
 gi|221506789|gb|EEE32406.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii VEG]
          Length = 2279

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP--LLFAH 115
               +++       L  L +                  +     ++ +N            
Sbjct: 1297 GHRVLIFSQMVKMLNLLAEFLKMRGYKHQRLDGTMAKEVRRKAMEHFNAKNSEDFCFLLS 1356

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++ F   W+ +   Q   R       + G  R V +Y L+ +++
Sbjct: 1357 TKAGGLGINLT-SADTVIIFDSDWNPQNDLQAEAR-----AHRIGQTRTVQIYRLVTKDS 1410

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETI 203
            I++ +L+R + K  +  L++  L +  +
Sbjct: 1411 IEQTILERAKAKMVLDTLVVQGLNQRNV 1438


>gi|171680898|ref|XP_001905393.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940407|emb|CAP65633.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1112

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
            IK L  + +       +V   F S L+ ++ A  Q            +       ++E+ 
Sbjct: 948  IKKLRELRKGHPTIKSVVFSQFTSFLSLIEPALTQANMHFVRLDGSMSQKARAAVLEEFK 1007

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E K   +L     + G GLNL      +     WW      Q I+R+      + G +  
Sbjct: 1008 ESKRFTVLLLSLKAGGVGLNLTM-AKRVFMMDPWWSFAIEAQAIDRV-----HRMGQEDE 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V +Y  I + +++E +L+    K  I   L
Sbjct: 1062 VKIYRFIVKGSVEERMLKIQERKKLIASSL 1091


>gi|322707181|gb|EFY98760.1| TBP associated factor (Mot1), putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1895

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 45/199 (22%)

Query: 37   NGAVYYDEEKHWKE--------VHDEKIKALEVII-----------------EKANAAPI 71
               VY D +K  +         +H  K+ AL+ ++                 +       
Sbjct: 1616 GTPVYDDTQKILQRQGTSIEDTIHAPKLTALKDLLVDCGIGGDDGDTNDPLYQPIKPHRA 1675

Query: 72   IVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117
            ++       L  ++K                     +K    + ++N +    +L    +
Sbjct: 1676 LIFCQMKEMLDMVEKKVLKELLPSVSHLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTS 1735

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY LI + T++
Sbjct: 1736 VGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRGTLE 1789

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E +L   R K  +   ++N
Sbjct: 1790 EKILSLQRFKIDVASTVVN 1808


>gi|322698448|gb|EFY90218.1| TBP associated factor (Mot1), putative [Metarhizium acridum CQMa 102]
          Length = 1893

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 45/199 (22%)

Query: 37   NGAVYYDEEKHWKE--------VHDEKIKALEVII-----------------EKANAAPI 71
               VY D +K  +         +H  K+ AL+ ++                 +       
Sbjct: 1614 GTPVYDDTQKILQRQGTSIEDTIHAPKLTALKDLLVDCGIGGDDGDTNDPLYQPIKPHRA 1673

Query: 72   IVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117
            ++       L  ++K                     +K    + ++N +    +L    +
Sbjct: 1674 LIFCQMKEMLDMVEKKVLKELLPSVSHLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTS 1733

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY LI + T++
Sbjct: 1734 VGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRGTLE 1787

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E +L   R K  +   ++N
Sbjct: 1788 EKILSLQRFKIDVASTVVN 1806


>gi|134079366|emb|CAK96995.1| unnamed protein product [Aspergillus niger]
          Length = 910

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40  VYYDEEKHW-KEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KA 87
           +Y +      K +   KI+ L  I+  +++    IV   F S L +++            
Sbjct: 659 IYLNAGDDDNKILPSTKIRRLMKILRRESSDHKFIVFSVFTSMLDKIEPFLKRTGIGYAR 718

Query: 88  FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +  G   D    ++ +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 719 YDGGMRNDHREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 777

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I+R+      +      V +Y +I + T++E ++     K  + ++ +  
Sbjct: 778 AIDRV-----HRLNQTVDVKIYKMIIKGTVEERIIDLQDRKRELANVTIEG 823


>gi|212527854|ref|XP_002144084.1| TBP associated factor (Mot1), putative [Penicillium marneffei ATCC
            18224]
 gi|210073482|gb|EEA27569.1| TBP associated factor (Mot1), putative [Penicillium marneffei ATCC
            18224]
          Length = 1894

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            KQY   Q+  Y   +  +I   + A K      L       D         + ++     
Sbjct: 1617 KQYDDVQK--YLSAKNSHIRDISHAPKLTALRDL-----LIDCGIGVDPNTEGELDTGAS 1669

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q+                      K    + ++N + 
Sbjct: 1670 YVSP---HRALVFCQMKEMLDIVQEDVLKKMLPSVQYLRLDGSVEATKRQNIVNQFNTDP 1726

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1727 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1780

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1781 YRLITRGTLEEKILSLQRFKIDVASTVVN 1809


>gi|302508605|ref|XP_003016263.1| hypothetical protein ARB_05661 [Arthroderma benhamiae CBS 112371]
 gi|291179832|gb|EFE35618.1| hypothetical protein ARB_05661 [Arthroderma benhamiae CBS 112371]
          Length = 1904

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1674 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1722

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1723 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1779

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1780 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1820


>gi|301100782|ref|XP_002899480.1| ATP-dependent helicase, putative [Phytophthora infestans T30-4]
 gi|262103788|gb|EEY61840.1| ATP-dependent helicase, putative [Phytophthora infestans T30-4]
          Length = 878

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K   L  ++     +   +++   +   L  L         +     G T + +  
Sbjct: 688 LASAKFDYLRTLLPNLQKDGHRVLIFSQWTKLLDLLEVLMSHMEYRYLRLDGSTDVQERQ 747

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +NE K I +      + G G+NL    + ++   L ++    +Q  +R       
Sbjct: 748 GLIDTYNEDKNIFVFLLSTRAGGLGINLT-AADTVILHDLDFNPTADEQACDRC-----H 801

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G  + V +Y L+++NT+D+ + +   +K+ +   +L+ L
Sbjct: 802 RIGQTKPVSIYKLVSENTVDQDIYKLGESKTELNHKILDKL 842


>gi|312217656|emb|CBX97603.1| similar to helicase swr1 [Leptosphaeria maculans]
          Length = 1692

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++   +A     ++       L  L++             G 
Sbjct: 1372 PDKRLLQYDCGKLQRLATLLRDLEAGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGS 1431

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + KI        S G G+NL  G + ++F+ L W+       +++
Sbjct: 1432 TKIEQRQILTDRFNSDPKILAFILSSRSGGLGINLT-GADTVIFYDLDWN-----PAMDK 1485

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1486 QCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1531


>gi|221487102|gb|EEE25348.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii GT1]
          Length = 2325

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP--LLFAH 115
               +++       L  L +                  +     ++ +N            
Sbjct: 1297 GHRVLIFSQMVKMLNLLAEFLKMRGYKHQRLDGTMAKEVRRKAMEHFNAKNSEDFCFLLS 1356

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++ F   W+ +   Q   R       + G  R V +Y L+ +++
Sbjct: 1357 TKAGGLGINLT-SADTVIIFDSDWNPQNDLQAEAR-----AHRIGQTRTVQIYRLVTKDS 1410

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETI 203
            I++ +L+R + K  +  L++  L +  +
Sbjct: 1411 IEQTILERAKAKMVLDTLVVQGLNQRNV 1438


>gi|296813699|ref|XP_002847187.1| ATP-dependent helicase RIS1 [Arthroderma otae CBS 113480]
 gi|238842443|gb|EEQ32105.1| ATP-dependent helicase RIS1 [Arthroderma otae CBS 113480]
          Length = 1044

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 33/207 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y +   E+  D +G   EA           +    A++             KI+ L  I
Sbjct: 775 EYEEDATEIVTDEEGGEDEAD--------LSESMPSAIHD-------VQTSAKIRHLMRI 819

Query: 63  IEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIP 110
           +++ +     IV   F S L +++     G           R   ++    +  N     
Sbjct: 820 LKRESGEFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASLNRLRNSSGTR 879

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNL    + +V    +W+    +Q I+R+      +      V VY L
Sbjct: 880 VLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRLNQTVDVKVYKL 933

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + T++E +L+    K  +    +  
Sbjct: 934 TIKGTVEERILELQERKRELAKSTIEG 960


>gi|225556696|gb|EEH04984.1| transcriptional accessory protein [Ajellomyces capsulatus G186AR]
          Length = 1984

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            KQY + Q+ L       +I     A K +    L       D         + ++     
Sbjct: 1706 KQYDEIQKSLAAK--NSHIRDVAHAPKLIALRDL-----LVDCGIGVDPSTEGELDTGAS 1758

Query: 62   IIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLD--------KDPCTIQEWN-EG 107
             +        +V       L       L+K  P  + L         K    + ++N + 
Sbjct: 1759 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDP 1815

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1816 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1869

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1870 YRLITRGTLEEKILNLQRFKIDVASTVVN 1898


>gi|321263831|ref|XP_003196633.1| chromatin structure remodeling complex protein STH1 [Cryptococcus
            gattii WM276]
 gi|317463110|gb|ADV24846.1| Chromatin structure remodeling complex protein STH1, putative
            [Cryptococcus gattii WM276]
          Length = 1430

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYY----DEEKHWKEVHDE- 54
            K Y   Q+           +     +     +QL       Y     DE+       DE 
Sbjct: 819  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 878

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKD 97
                  K + L+ I+ K       +++ +             D    +     G T  +D
Sbjct: 879  IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDYRGWKYCRLDGSTKAED 938

Query: 98   PCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              T+   +N+   P  +      + G GLNLQ   + ++ +   W+     Q        
Sbjct: 939  RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQ-SADTVIIYDTDWNPHADLQA-----QD 992

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K + +  
Sbjct: 993  RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGKFDEVTT 1043


>gi|294925769|ref|XP_002779000.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239887846|gb|EER10795.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1042

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
               D+E +   +   K+  L+ ++ K  A    +++   F S L  +Q+          
Sbjct: 582 CQNKDQEFNRMIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVE 641

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 T       I  +N  +    L      + G G+NL    ++++ F   W+ +  
Sbjct: 642 RLDGSATAKAREEAIDRFNTPESSAFLFLLSTRAGGIGINLT-AADVVIIFDSDWNPQMD 700

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q   R       + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 701 IQATAR-----AHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 747


>gi|70951871|ref|XP_745142.1| DNA repair protein rad54 [Plasmodium chabaudi chabaudi]
 gi|56525372|emb|CAH78699.1| DNA repair protein rad54, putative [Plasmodium chabaudi chabaudi]
          Length = 1032

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
             K + L  +   I++     +++  ++   L  ++               G ++ K   
Sbjct: 537 SSKFQLLHFLLKTIKQDTNDKVVIVSNYTQTLDYMEILCKENHYKFVRLDGGISIKKRHK 596

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++ N   I +      S G G+NL    N L+     W+    +Q + R+      +
Sbjct: 597 VISDFTNTDDIFIFLLSSKSGGCGINL-ISSNRLILLDPDWNPANDKQALARVW-----R 650

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+  ++Y L    TIDE V QR  +K  +  +++
Sbjct: 651 EGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSSMIV 687


>gi|240281557|gb|EER45060.1| transcriptional accessory protein [Ajellomyces capsulatus H143]
          Length = 1913

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            KQY + Q+ L       +I     A K +    L       D         + ++     
Sbjct: 1635 KQYDEIQKSLAAK--NSHIRDVAHAPKLIALRDL-----LVDCGIGVDPSTEGELDTGAS 1687

Query: 62   IIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLD--------KDPCTIQEWN-EG 107
             +        +V       L       L+K  P  + L         K    + ++N + 
Sbjct: 1688 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDP 1744

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1745 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1798

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1799 YRLITRGTLEEKILNLQRFKIDVASTVVN 1827


>gi|302496981|ref|XP_003010491.1| hypothetical protein ARB_03192 [Arthroderma benhamiae CBS 112371]
 gi|291174034|gb|EFE29851.1| hypothetical protein ARB_03192 [Arthroderma benhamiae CBS 112371]
          Length = 1504

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 730 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 788

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 789 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 847

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 848 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 889


>gi|327307624|ref|XP_003238503.1| TBP associated factor Mot1 [Trichophyton rubrum CBS 118892]
 gi|326458759|gb|EGD84212.1| TBP associated factor Mot1 [Trichophyton rubrum CBS 118892]
          Length = 1903

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1673 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1721

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1722 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1778

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1779 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1819


>gi|121708636|ref|XP_001272197.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400345|gb|EAW10771.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1121

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 434 EMQIKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 493

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L         +     G T
Sbjct: 494 EHLV--FNSGKMVILDKLLARMQRQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTT 551

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+   +  +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 552 AHEDRIAAIDDYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 610

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I ++ I+E VL+R   K  +  L++   + +
Sbjct: 611 -----AHRIGQTKQVVVFRFITEDAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|146415248|ref|XP_001483594.1| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  LE ++ +       +++       L  L           +    G    +   
Sbjct: 641 SSGKMVLLEQLLTRLRKEGHRVLIFSQMVRMLDILGDYLSIKGYAFQRLDGGIPSSQRRI 700

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 701 SIDHFNAPDSRDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 754

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++TI+E +L+R R K  ++  +++
Sbjct: 755 RIGQKNHVSVYRFVSKDTIEEEILERARKKMILEYAIIS 793


>gi|255930267|ref|XP_002556693.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581306|emb|CAP79077.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 978

 Score = 95.8 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQG 91
            +H       KI+ L+ +++         I++  ++ S L+ L                 
Sbjct: 610 HRHLSPSSSAKIRVLDQLLDTMRSKTDEKIVLVSNYTSTLSLLATLLTSLGLPYLRLDGS 669

Query: 92  RTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K    + ++N               + G GLNL  G + L+ F + W+     Q +
Sbjct: 670 TPAQKRQGLVDDFNRLPASSCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAM 728

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            RI      + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 729 ARI-----HRDGQKRPCRIYRILLKGSLEEKIWQRQVTKLGLADSVMQ 771


>gi|294891224|ref|XP_002773482.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239878635|gb|EER05298.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 994

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
               D+E +   +   K+  L+ ++ K  A    +++   F S L  +Q+          
Sbjct: 583 CQNKDQEFNRMIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVE 642

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 T       I  +N  +    L      + G G+NL    ++++ F   W+ +  
Sbjct: 643 RLDGSATAKAREEAIDRFNTPESSAFLFLLSTRAGGIGINLT-AADVVIIFDSDWNPQMD 701

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q   R       + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 702 IQATAR-----AHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 748


>gi|67609421|ref|XP_666977.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis TU502]
 gi|54658055|gb|EAL36743.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis]
          Length = 2025

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L+ ++ +     + +++       L  +           +        +     + 
Sbjct: 871  KLCLLDKLLSRLREKGSRVLIFSQMVRMLNIISEFLVLRGFRHQRLDGTMGKELRKKAMD 930

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G G+NL    + ++ +   W+ +   Q   R       + G
Sbjct: 931  HFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQNDLQAEAR-----AHRIG 984

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             K+ V +Y L+ +++I+E +L+R +TK  +  L++  L
Sbjct: 985  QKKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGL 1022


>gi|302660586|ref|XP_003021971.1| hypothetical protein TRV_03919 [Trichophyton verrucosum HKI 0517]
 gi|291185893|gb|EFE41353.1| hypothetical protein TRV_03919 [Trichophyton verrucosum HKI 0517]
          Length = 1500

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A G+   +++         K+  L+ ++ K   +   +++       L  L       R 
Sbjct: 730 AGGSTRREDQLKALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYM-DARG 788

Query: 94  LDKDPCT-----------IQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +                I+ +N  G           + G G+NL    + ++ F   W+
Sbjct: 789 FNYQRLDGTIAAGPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWN 847

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +   Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 848 PQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 889


>gi|123977054|ref|XP_001330700.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121897443|gb|EAY02564.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 822

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 32  CLQLANGAVYYDEEK-HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK-- 86
             ++ N    +DE+K         K K L  I+ + +      ++       L+ L++  
Sbjct: 460 LQEICNHPNIFDEQKYSTNPKMSCKTKLLMKILPQWHKEGHRCLLFAQSLKMLSILEEIM 519

Query: 87  --------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           ++    +  +N G            G G+NL  G + ++     
Sbjct: 520 TNLNLEFFRMDGDTPPERRIVIMDRFNHGDKFACLLSKKVGGLGINLT-GADRVIIIEPD 578

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+    +Q +ER       + G  ++V VY LI   TI+E + ++   K  + + ++   
Sbjct: 579 WNPSTDEQALER-----AYRIGQTKSVSVYRLICVGTIEEKIYKKQIFKQILSNTIMQDA 633

Query: 199 KKETI 203
           +++ +
Sbjct: 634 RQKRL 638


>gi|308486424|ref|XP_003105409.1| CRE-ROM-4 protein [Caenorhabditis remanei]
 gi|308256514|gb|EFP00467.1| CRE-ROM-4 protein [Caenorhabditis remanei]
          Length = 1512

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                ++ +N+ +    +      + G GLNL  G + L+ +   W+    QQ + RI  
Sbjct: 37  DRQKLVRHFNDNRDASNVFLLSTKAGGVGLNL-IGASRLILYDSDWNPANDQQAMARIW- 94

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 95  ----RDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 135


>gi|302916021|ref|XP_003051821.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
 gi|256732760|gb|EEU46108.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
          Length = 1427

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +     + +  D +G    A   ++  ++  +L N    +D  ++           
Sbjct: 808  KLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDVVENVMNPLSISNDL 867

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DK 96
                  K + L+ I+   +A+   +++ +   + +          R++     G T  D+
Sbjct: 868  LWRTAGKFELLDRILPKYQASGHRVLMFFQMTAIMDIMEDYLRYKRVEYLRLDGTTKSDE 927

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    K  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 928  RSDLLREFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 981

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 982  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1026


>gi|219110183|ref|XP_002176843.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411378|gb|EEC51306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 509

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
               K K L  I+         I++   + S L  L     Q             +++  
Sbjct: 305 FSSAKCKRLRAILPDLVGKGHRILIFSVWTSCLDLLSCLMEQMGLGYLRMEGSTPVNERQ 364

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +  E  IP+      +CG G+NL    +  +   L ++     Q  +R       
Sbjct: 365 ALIDRFTSETSIPVFLLSTKACGLGINLTC-ADTCIMHDLDFNPFNDLQAEDRC-----H 418

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G K+ V +  +I ++T+DE + +  + K+ +   +++   +E
Sbjct: 419 RIGQKKPVKIIKMITEDTVDEDIYKMQQRKARMNAAIMDTDSRE 462


>gi|68468949|ref|XP_721533.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
 gi|68469498|ref|XP_721262.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
 gi|46443171|gb|EAL02455.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
 gi|46443453|gb|EAL02735.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
          Length = 1410

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDK 96
             +   K+  LE ++ +       +++       L  L           +         K
Sbjct: 669 IVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSK 728

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N    K         + G G+NL    + ++ F   W+ +   Q + R    
Sbjct: 729 RKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR---- 783

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 784 -AHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824


>gi|255729544|ref|XP_002549697.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
 gi|240132766|gb|EER32323.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
          Length = 1024

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 43/225 (19%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQ-------------LANGAVYYDEE 45
            Q+ LY  +  ++I+A N ++             +Q             +  G  Y  +E
Sbjct: 374 MQKNLYKKILEKDIDAVNGSNGKKESKTRLLNIVMQLRKCCNHPYLFEGMEPGPPYTTDE 433

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 + +K+  L+ +++  +   + +++    +  L  L         Q     G+T 
Sbjct: 434 HLV--FNSQKMLILDQMLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTE 491

Query: 95  DKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R 
Sbjct: 492 HSDRINAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR- 549

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V+  I +N I+E VL+R   K  +  L++ 
Sbjct: 550 ----AHRIGQTKQVKVFRFITENAIEEKVLERATQKLRLDQLVIQ 590


>gi|294933057|ref|XP_002780576.1| Chromatin remodelling complex ATPase chain Iswi, putative
           [Perkinsus marinus ATCC 50983]
 gi|239890510|gb|EER12371.1| Chromatin remodelling complex ATPase chain Iswi, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1003

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 33/211 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQ-------LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            L G  +   N+  +  KC         +  G  Y+D    W+  +  K++ ++ ++E+ 
Sbjct: 264 SLSGHKMRLLNTLMQLRKCCNHPYLFEGMEPGPPYFDGPHLWE--NSGKLRVVDKLLERL 321

Query: 67  ------NAAPIIVAYHFNSDLA------RLQK----AFPQGRTLDKDPCTIQEWNEGKIP 110
                     +++       L       RL+            +      I ++      
Sbjct: 322 AVPGPQGKNQVLIFTQMTRMLDIMDDYLRLKGYGYCRIDGDTAMSDRQAMIDDFTRPDSD 381

Query: 111 --LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G G+NL    N ++ +   ++ +   Q I+R       + G KR V VY
Sbjct: 382 KFVFILSTRAGGLGINLNT-ANYVIIYDSDFNPQMDLQAIDR-----AHRIGQKRQVTVY 435

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L+ Q+T++E +++R   K  I +L++   K
Sbjct: 436 RLVTQDTVEEKIVERAAKKMQIDNLVIQKGK 466


>gi|238879188|gb|EEQ42826.1| chromo domain protein 1 [Candida albicans WO-1]
          Length = 1410

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDK 96
             +   K+  LE ++ +       +++       L  L           +         K
Sbjct: 669 IVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSK 728

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N    K         + G G+NL    + ++ F   W+ +   Q + R    
Sbjct: 729 RKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR---- 783

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 784 -AHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824


>gi|218200575|gb|EEC83002.1| hypothetical protein OsI_28047 [Oryza sativa Indica Group]
          Length = 1235

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 70   PIIVAYHFNSDLAR---------LQKAFPQGR-TLDKDPCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L           +Q     G  +L+     ++++N + ++ ++     +
Sbjct: 1082 KAIVFSQWTGMLDLLELSLNSNLIQYRRLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKA 1141

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+      ++   LWW+     Q I+R       + G  R V V  L  ++T+++
Sbjct: 1142 GNLGLNM-VAACHVILLDLWWNPYAEDQAIDR-----AHRIGQTRPVTVSRLTIKDTVED 1195

Query: 179  LVLQRLRTKSTI 190
             +L     K  +
Sbjct: 1196 RILALQEEKRAM 1207


>gi|297837353|ref|XP_002886558.1| hypothetical protein ARALYDRAFT_475211 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297332399|gb|EFH62817.1| hypothetical protein ARALYDRAFT_475211 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1281

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKA----FPQGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+ +      Q R LD           +Q++N   ++ ++    
Sbjct: 1124 GEKAIVFSQWTKMLDLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1183

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1184 KAASLGLNMVAACHVLML-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVVRFTVKDTV 1237

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1238 EDRILALQQKKRMM 1251


>gi|156375431|ref|XP_001630084.1| predicted protein [Nematostella vectensis]
 gi|156217098|gb|EDO38021.1| predicted protein [Nematostella vectensis]
          Length = 1872

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTI--QEWNEGKIPLLFA 114
              +++     S L  ++                 G T      +I  +  N+  I +L  
Sbjct: 1665 HRVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNNDPSIDVLLL 1724

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY L+ + 
Sbjct: 1725 TTHVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLVTKG 1778

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K TI + +++
Sbjct: 1779 TLEEKIMGLQKFKMTIANTVIS 1800


>gi|260940993|ref|XP_002615336.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
 gi|238850626|gb|EEQ40090.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
          Length = 1269

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNS------DLARLQ---KAFPQGRTLDKDPCT 100
              K + L+ I+ K  A+   +++ +   S      D  RL+        G T  +D   
Sbjct: 817 TSGKFELLDRILPKFKASGHKVLIFFQMTSVMNIFEDFLRLRDMNYLRLDGSTKAEDRQD 876

Query: 101 -IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +N+ +  +        + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 877 MLKSFNKPESDIFCFLLSTRAGGLGLNLQ-SADTVIIFDTDWNPHQDLQA-----QDRAH 930

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 931 RIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 972


>gi|115475083|ref|NP_001061138.1| Os08g0180300 [Oryza sativa Japonica Group]
 gi|46805057|dbj|BAD17038.1| putative SNF2 domain-containing protein [Oryza sativa Japonica Group]
 gi|113623107|dbj|BAF23052.1| Os08g0180300 [Oryza sativa Japonica Group]
 gi|215712333|dbj|BAG94460.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640021|gb|EEE68153.1| hypothetical protein OsJ_26263 [Oryza sativa Japonica Group]
          Length = 1030

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 70   PIIVAYHFNSDLAR---------LQKAFPQGR-TLDKDPCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L           +Q     G  +L+     ++++N + ++ ++     +
Sbjct: 877  KAIVFSQWTGMLDLLELSLNSNLIQYRRLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKA 936

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+      ++   LWW+     Q I+R       + G  R V V  L  ++T+++
Sbjct: 937  GNLGLNM-VAACHVILLDLWWNPYAEDQAIDR-----AHRIGQTRPVTVSRLTIKDTVED 990

Query: 179  LVLQRLRTKSTI 190
             +L     K  +
Sbjct: 991  RILALQEEKRAM 1002


>gi|297834836|ref|XP_002885300.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331140|gb|EFH61559.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 910

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQG 91
           +  W E+   K+  L  ++          I++  ++   L    +               
Sbjct: 526 DGAWVEL-SGKMHVLSRLLANLRRKTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGS 584

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T+ K    +   N+             + G GLNL  G N LV F   W+    +Q   
Sbjct: 585 TTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDKQAAA 643

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R+      + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 644 RVW-----RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|190405721|gb|EDV08988.1| chromo domain protein 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 1436

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 661 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 720

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 721 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 774

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 775 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 813


>gi|145338703|ref|NP_188552.3| ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|112419506|dbj|BAF03042.1| Rad54 [Arabidopsis thaliana]
 gi|116518260|gb|ABJ99465.1| RAD54-like protein [Arabidopsis thaliana]
          Length = 910

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQG 91
           +  W E+   K+  L  ++          I++  ++   L    +               
Sbjct: 526 DGAWVEL-SGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGS 584

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T+ K    +   N+             + G GLNL  G N LV F   W+    +Q   
Sbjct: 585 TTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDKQAAA 643

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R+      + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 644 RVW-----RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|9294624|dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thaliana]
          Length = 959

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQG 91
           +  W E+   K+  L  ++          I++  ++   L    +               
Sbjct: 526 DGAWVEL-SGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGS 584

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T+ K    +   N+             + G GLNL  G N LV F   W+    +Q   
Sbjct: 585 TTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDKQAAA 643

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R+      + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 644 RVW-----RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|146412556|ref|XP_001482249.1| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYC-----DLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE- 54
           K Y +  +         D  G+ I   N+ ++ ++  ++ N   VY + E       D  
Sbjct: 244 KLYQQMLKYNLLFSSNPDGDGKPIAIKNTNNQIMQLRKICNHPFVYEEVENMINPTADTN 303

Query: 55  --------KIKALEVIIEK--ANAAPIIVAYH------FNSDLARLQK----AFPQGRTL 94
                   K + L+ I+ K  A    +++ +          D  RL+             
Sbjct: 304 DEIWRVAGKFELLDRILPKLKATGHRVLIFFQMTLIMNIMEDFLRLRDLKYMRLDGATKA 363

Query: 95  DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     ++ +NE             + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 364 DDRTGLLKLFNEENSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA----- 417

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 418 QDRAHRIGQKNEVRIIRLITEDSVEEMILERAHAKLEIDGKVIQAGK 464


>gi|119470473|ref|XP_001258040.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119406192|gb|EAW16143.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1148

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 40   VYYDEEKH-WKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT---- 93
            +Y +   +  + +   KI+ L  I+  +A     IV   F S L +++    +       
Sbjct: 896  IYLNPGDNETQVLPSTKIRHLMKILRREAGDYKFIVFSVFTSMLDKIEPFLKRAGIGFAR 955

Query: 94   --------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    L +        N     +L     +   GLNL    + +V    +W+    +
Sbjct: 956  YDGSMRNDLREASLDRLRHNSA-TRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEE 1013

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q I+R+      +      V +Y +I ++T++E +L+    K  + +L +  
Sbjct: 1014 QAIDRV-----HRLNQTVDVKIYKMIIKDTVEERILELQDRKRELANLTIEG 1060


>gi|70986552|ref|XP_748767.1| SWI/SNF family DNA-dependent ATPase [Aspergillus fumigatus Af293]
 gi|66846397|gb|EAL86729.1| SWI/SNF family DNA-dependent ATPase, putative [Aspergillus
           fumigatus Af293]
          Length = 707

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 21/155 (13%)

Query: 51  VHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
           V+  KI+    II    ++     +IV  HF + L  ++          + +    T  +
Sbjct: 530 VNSSKIEKAAEIIKAIRDQGTGDKVIVFSHFTALLDLIEVPIARSGWKYRRYDGRMTPAE 589

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +       +L     +   GLNL    N+++     W+    +Q I R+    
Sbjct: 590 RGSAISSFASQPDCLVLLVSLKAGNAGLNLTCASNVIIM-EPSWNPYIEEQAIGRV---- 644

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G +R V VY L+  +TI+  +L+    K  +
Sbjct: 645 -HRIGQERHVRVYRLLVADTIEIRILELQEKKRKL 678


>gi|255552483|ref|XP_002517285.1| helicase, putative [Ricinus communis]
 gi|223543548|gb|EEF45078.1| helicase, putative [Ricinus communis]
          Length = 363

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 29/166 (17%)

Query: 48  WKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL--------- 94
            K     K+ AL  ++  A         ++   F   L  L++                 
Sbjct: 184 SKRNTSSKVSALLNLLMAARDKNPTAKSVIFSQFQKMLVLLEEPLKAAGFKILRLDGTMN 243

Query: 95  -DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             K    I+E+    IP      +L A   +   G+NL    + +     WW+    +Q 
Sbjct: 244 AKKKAQVIKEF---GIPGPNGPTVLLASLKASCAGINL-AAASKVYLLEPWWNPAVEEQA 299

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ++R+      + G K  V V  LI +N+I+E +L+    K  +   
Sbjct: 300 MDRV-----HRIGQKEDVTVVRLITRNSIEERILEMQERKKKLAKE 340


>gi|190407873|gb|EDV11138.1| helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 1867

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1667 FKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1725

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   +
Sbjct: 1726 VEHDWNPMNDLQAMDR-----AHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1780

Query: 195  LN 196
            +N
Sbjct: 1781 VN 1782


>gi|188996818|ref|YP_001931069.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931885|gb|ACD66515.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 559

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 30/190 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSD-LARLQ 85
             K  Q+ N           + +H  K++ L+ I+++       +++  +F ++ + ++ 
Sbjct: 365 LQKLRQICNFP--------PESIHSPKVERLKEIVKELADQKEKVVIFTNFVNEGVDKII 416

Query: 86  KAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           K                  +  +K+    +   + K  +      + G GL L    + +
Sbjct: 417 KNIKTILQPQQIVSYHGSLKPDEKNLAVKKFVEDEKCLVFVGTINAAGEGLTLT-SSSYV 475

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +FF L W+  +  Q  +R+      + G K  V +Y  I QNT++E ++Q+L  K ++ +
Sbjct: 476 IFFDLHWNPAKMWQAEDRV-----HRIGQKNKVNIYTFITQNTVEEKIMQKLEEKRSMIN 530

Query: 193 LLLNALKKET 202
            +++ +  + 
Sbjct: 531 NVIDDVSSDI 540


>gi|149244356|ref|XP_001526721.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449115|gb|EDK43371.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1500

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 20/161 (12%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKD 97
            +   K+  LE ++ +       +++       L  L           +    G    + 
Sbjct: 724 VMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYMSIKGYAFQRLDGGIPSSQR 783

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I  +N              + G G+NL    + ++ F   W+ +   Q + R     
Sbjct: 784 RISIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR----- 837

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 838 AHRIGQKNQVLVYRFVSKDTVEEQILERARKKMILEYAIIS 878


>gi|124481796|gb|AAI33116.1| LOC553504 protein [Danio rerio]
          Length = 1105

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 25/169 (14%)

Query: 30  VKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           +K +Q L N  +   ++     +  + +  LE                       L+   
Sbjct: 442 MKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYC----------------MAEGLEYHR 485

Query: 89  PQGRTLDKDP-CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  KD    ++E+N    + L      + G GLN   G N++V F   W+     Q
Sbjct: 486 LDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 545 AIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 588


>gi|115433988|ref|NP_001041752.1| Os01g0102800 [Oryza sativa Japonica Group]
 gi|15128457|dbj|BAB62641.1| putative DNA repair and recombination protein [Oryza sativa
           Japonica Group]
 gi|20804446|dbj|BAB92143.1| putative DNA repair and recombination protein [Oryza sativa
           Japonica Group]
 gi|39652280|dbj|BAD04853.1| Cockayne syndrome group B [Oryza sativa Japonica Group]
 gi|113531283|dbj|BAF03666.1| Os01g0102800 [Oryza sativa Japonica Group]
          Length = 1187

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +E +++  K     +++       L  ++          +         +    
Sbjct: 712 SGKMKVVEQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMAL 771

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N   +I +        G G NL  G N ++ +   W+     Q  ER       + 
Sbjct: 772 IDEFNNTDEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDMQARERAW-----RI 825

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  R V VY LI + TI+E V  R   K  + + +L
Sbjct: 826 GQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVL 861


>gi|6325175|ref|NP_015243.1| Mot1p [Saccharomyces cerevisiae S288c]
 gi|417308|sp|P32333|MOT1_YEAST RecName: Full=TATA-binding protein-associated factor MOT1;
            Short=TBP-associated factor MOT1; AltName: Full=Modifier
            of transcription 1
 gi|171965|gb|AAA34786.1| Mot1 [Saccharomyces cerevisiae]
 gi|1147612|gb|AAB68257.1| Mot1p: a putative helicase [Saccharomyces cerevisiae]
 gi|151942715|gb|EDN61061.1| modifier of transcription [Saccharomyces cerevisiae YJM789]
 gi|285815459|tpg|DAA11351.1| TPA: Mot1p [Saccharomyces cerevisiae S288c]
          Length = 1867

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1667 FKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1725

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   +
Sbjct: 1726 VEHDWNPMNDLQAMDR-----AHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1780

Query: 195  LN 196
            +N
Sbjct: 1781 VN 1782


>gi|63054463|ref|NP_588472.2| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces pombe 972h-]
 gi|46397098|sp|O94421|SNF22_SCHPO RecName: Full=SWI/SNF chromatin-remodeling complex subunit snf22;
            AltName: Full=ATP-dependent helicase snf22; AltName:
            Full=SWI/SNF complex subunit snf22
 gi|42558222|dbj|BAD11104.1| SNF2-family ATP dependent chromatin remodeling factor Snf22
            [Schizosaccharomyces pombe]
 gi|157310533|emb|CAA22498.2| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces pombe]
          Length = 1680

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 79/226 (34%), Gaps = 34/226 (15%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIK 57
            +K Y + ++     + GE              +QL    N    +++ +   +     + 
Sbjct: 1122 LKLYQQMKKHGMLFVDGEK-GKTGIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVD 1180

Query: 58   ALE------VIIEK------ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK 96
             L        ++++            ++ +     +  +         +     G T   
Sbjct: 1181 LLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSD 1240

Query: 97   DP-CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D    + ++N+ K  + +      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 1241 DRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 1294

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  + V +  LI + +I+E +L R + K  +   ++ A K
Sbjct: 1295 DRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGK 1340


>gi|289615950|emb|CBI57301.1| putative STH1 protein [Sordaria macrospora]
          Length = 1486

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++     +     
Sbjct: 794  RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 853

Query: 59   LE------VIIEK------ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD 97
            L        ++++      A    +++ +   + +           +Q     G T  +D
Sbjct: 854  LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 913

Query: 98   -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 914  RSELLRLFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 967

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 968  RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 1012


>gi|256269976|gb|EEU05227.1| Mot1p [Saccharomyces cerevisiae JAY291]
          Length = 1867

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1667 FKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1725

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   +
Sbjct: 1726 VEHDWNPMNDLQAMDR-----AHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1780

Query: 195  LN 196
            +N
Sbjct: 1781 VN 1782


>gi|255944965|ref|XP_002563250.1| Pc20g07250 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587985|emb|CAP86054.1| Pc20g07250 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1119

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +   K++ L+ ++ +  AN    ++   F          L  L+  F    GRT 
Sbjct: 932  KNDEWMDSGKVEQLKELLTRFIANGDRTLIFSQFTMVMDILEHVLETLKIEFVRLDGRTN 991

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E  +IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 992  VEDRQSILDAFHERTEIPVFLLSTKAGGAGINL-ACANRVVIFDSSFNPQEDVQA----- 1045

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V VY L+ ++TI+E +    +TK  +   +
Sbjct: 1046 ENRAHRVGQTREVEVYRLVTRHTIEEQIYGLGQTKLALDQAV 1087


>gi|87307136|ref|ZP_01089281.1| swi/snf family protein [Blastopirellula marina DSM 3645]
 gi|87289876|gb|EAQ81765.1| swi/snf family protein [Blastopirellula marina DSM 3645]
          Length = 589

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 27/205 (13%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   + E    L+  GE +   +     ++  Q+ N           +     K+  L  
Sbjct: 366 YELAENEGIVRLEKMGEELTVQHVFELVLRLKQICNF--------DPRTGDSTKMDQLRA 417

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN-EGKIP 110
            +E+  A+    IV   +   + ++++       L         K    I+++  +    
Sbjct: 418 DMEEVVASGKKAIVFSQWTQTIEQIRRQLEPFGPLEYHGKIPSKKRDGVIEQFKHDPSKS 477

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +   GLNLQ+    +  F  WW+     Q I R       + G K AV +   
Sbjct: 478 VILMSYGAGSVGLNLQF-CEYVFLFDRWWNPAIEDQAINR-----AHRIGAKGAVTISRY 531

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           +A NTI++ + Q L  K  + + L 
Sbjct: 532 LAMNTIEDRIDQVLSEKRELFNTLF 556


>gi|302682057|ref|XP_003030710.1| hypothetical protein SCHCODRAFT_57400 [Schizophyllum commune H4-8]
 gi|300104401|gb|EFI95807.1| hypothetical protein SCHCODRAFT_57400 [Schizophyllum commune H4-8]
          Length = 700

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 69/160 (43%), Gaps = 19/160 (11%)

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
           +    K++ L  ++  +KA    +++       L  L+              G T  +D 
Sbjct: 450 QFDCGKLQYLADLLREKKAGGHRVLIFTQMTRILDILEVFLNFHGYLYLRLDGATKIEDR 509

Query: 99  CTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + + +N    +    A   S G G+NL  G + +VF+   ++ +     ++R    R 
Sbjct: 510 QYVTERFNADDRVFCFIASSRSGGVGINLT-GADTVVFYDSDFNPQ-----MDRQCEDRA 563

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V +Y  ++Q+T++E +L++   K ++  L++ 
Sbjct: 564 HRIGQIRDVHIYRFVSQHTVEEAMLRKANQKRSLDSLVIQ 603


>gi|198416532|ref|XP_002119473.1| PREDICTED: similar to TATA-binding protein-associated factor 172
            (ATP-dependent helicase BTAF1) (TBP-associated factor
            172) (TAF-172) (TAF(II)170) (B-TFIID transcription
            factor-associated 170 kDa subunit), partial [Ciona
            intestinalis]
          Length = 1335

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 20/144 (13%)

Query: 66   ANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWNE-GKIPL 111
            AN    +V     + L  ++                  G   ++    + ++N    I L
Sbjct: 1125 ANQHRALVFCQHRNLLNIIENDLLRQLMPGVTYLRLDGGVPSNQRYSIVSKFNNDPSIDL 1184

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + ++F    W+     Q ++R       + G K+ V VY +I
Sbjct: 1185 LLLTTKVGGLGLNLT-GADTVIFVEHDWNPMVDLQAMDR-----AHRIGQKKVVNVYRII 1238

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             + T++E +L     K  + + ++
Sbjct: 1239 TRGTMEEKILGLQEFKLNVANTIV 1262


>gi|124360542|gb|ABN08552.1| SNF2-related; Zinc finger, RING-type; ATP-requiring DNA helicase
           RecQ [Medicago truncatula]
          Length = 844

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 47  HWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTL-------- 94
             +     K+  L  ++ ++         +V   F   L  L++                
Sbjct: 663 TAEVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTM 722

Query: 95  --DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +    I+++   ++    +L A   +   G+NL    + +     WW+    +Q ++
Sbjct: 723 NAKQRAQVIEQFQLSEVDEPMILLASLRASSTGINLT-AASRVYLMEPWWNPAVEEQAMD 781

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           R+      + G K  V +  LIA+N+I+E +L     K   
Sbjct: 782 RV-----HRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKKT 817


>gi|255720811|ref|XP_002545340.1| hypothetical protein CTRG_00121 [Candida tropicalis MYA-3404]
 gi|240135829|gb|EER35382.1| hypothetical protein CTRG_00121 [Candida tropicalis MYA-3404]
          Length = 1162

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 69/179 (38%), Gaps = 16/179 (8%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFP 89
            L +  V  D          + I+ ++ I +  +   IIV   F +    L+     +  P
Sbjct: 964  LISEFVKRDNGFEPSAKIQKCIEIIQEITQANSNEKIIVFSQFTTLFDLLKLVLHYQKIP 1023

Query: 90   QGR-----TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
              R      ++     I+E+ +    +L     S   GL L    +I++    +W+    
Sbjct: 1024 FLRYDGTMNMESKNTVIKEFYKSDTRVLLLSLRSGNAGLTLTCANHIIIM-DPFWNPYVE 1082

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             Q + R       + G +R V V+ ++ + T++  +++    K  +    L+  K ++I
Sbjct: 1083 DQAMGR-----AHRIGQEREVHVHRVLIEGTVESRIMELQEHKKELIGEALDESKMKSI 1136


>gi|168057891|ref|XP_001780945.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
 gi|162667579|gb|EDQ54205.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
          Length = 1677

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 18/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEGK--IPLLFAH 115
               +++   F   L  L+              G+    D    I  ++     I +    
Sbjct: 880  GRRVLIFSQFTMMLDLLEDYLLSKGYSYERIDGKIRGSDRQAAIDRYSAKDSSIFVFLLS 939

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+ L    +  + +   W+ +   Q + R       + G  + V +Y LI +NT
Sbjct: 940  TRAGGLGITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQTKDVKIYRLITRNT 993

Query: 176  IDELVLQRLRTKSTIQDLLL 195
             ++ + +    K  + + +L
Sbjct: 994  YEQRLFECSSRKYGLDEAIL 1013


>gi|259150076|emb|CAY86879.1| Mot1p [Saccharomyces cerevisiae EC1118]
          Length = 1842

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1642 FKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1700

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   +
Sbjct: 1701 VEHDWNPMNDLQAMDR-----AHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1755

Query: 195  LN 196
            +N
Sbjct: 1756 VN 1757


>gi|146420558|ref|XP_001486234.1| hypothetical protein PGUG_01905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 761

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 47  HWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDK 96
                +  KI+ L+ +I E      +++   F   L  L               G T  +
Sbjct: 502 EVFYKNSAKIQVLDQLINELLPDHKLLIFSQFTKMLDLLHDWLDFKNIGFCRLDGSTSHE 561

Query: 97  DPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D  T I ++N  K   +      + G G+NL    + +V F   W+ +   Q I+R+   
Sbjct: 562 DRDTQIDQFNTDKSKKVFLLSTRAGGLGINLT-AADTVVIFDNDWNPQVDLQAIDRV--- 617

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V +Y  + +N+++E+++ +  +K  ++ L++ 
Sbjct: 618 --HRIGQKKPVKIYRFLIKNSVEEILISKSYSKRFLEKLVIQ 657


>gi|150951142|ref|XP_001387415.2| ATPase component of a four subunit chromatin remodeling complex
           [Scheffersomyces stipitis CBS 6054]
 gi|149388353|gb|EAZ63392.2| ATPase component of a four subunit chromatin remodeling complex
           [Pichia stipitis CBS 6054]
          Length = 860

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 42/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLAN----------GAVYYDEE 45
           + QR+ Y  +  ++I+A N A+K           ++  +  N          G  Y  +E
Sbjct: 214 EMQRKWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDE 273

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 + +K+  L+ ++   +   + +++    +  L  L         +     G+T 
Sbjct: 274 HLV--YNSQKMIILDQLLRKFQKEGSRVLIFSQMSRMLDILEDYCFFREFKYCRIDGQTE 331

Query: 95  DKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    I E+N+      +      + G G+NL    +I+V F   W+ +   Q ++R 
Sbjct: 332 HADRINAIDEYNKPGSDRFVFLLTTRAGGLGINLT-SADIVVLFDSDWNPQADLQAMDR- 389

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V+  + +N I+E VL+R   K  +  L++ 
Sbjct: 390 ----AHRIGQTKQVKVFRFVTENAIEEKVLERATQKLRLDQLVIQ 430


>gi|61402625|gb|AAH91795.1| LOC553504 protein [Danio rerio]
          Length = 1069

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 25/169 (14%)

Query: 30  VKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           +K +Q L N  +   ++     +  + +  LE                       L+   
Sbjct: 442 MKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESFC----------------MAEGLEYHR 485

Query: 89  PQGRTLDKDP-CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  KD    ++E+N    + L      + G GLN   G N++V F   W+     Q
Sbjct: 486 LDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPANDLQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++
Sbjct: 545 AIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVI 588


>gi|71033631|ref|XP_766457.1| DNA-dependent ATPase [Theileria parva strain Muguga]
 gi|68353414|gb|EAN34174.1| DNA-dependent ATPase, putative [Theileria parva]
          Length = 1253

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 32/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKC-LQL--ANGAVY---------YDEEKHWK 49
           + Y    R+   +L  ++        + +   +QL  A    Y          D      
Sbjct: 452 QLYRDLLRKNVPELGTDDSTKSGIHVQLLNLAMQLRKACNHPYLFEGYEDRNEDPFGEHV 511

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
             +  K+  ++ +I +   N++ I++       L  L+              G T  +D 
Sbjct: 512 VQNSGKLCLVDKLIPRLLGNSSRILIFSQMARMLDILEDYCRMRNYLYFRIDGNTSGEDR 571

Query: 99  C-TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N  E K+ +      + G G+NL    ++++ +   W+ +   Q I+R     
Sbjct: 572 DYQISSFNHPESKVNIFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAIDR----- 625

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V+VY L+ Q TI+E +++R   K  +   ++ 
Sbjct: 626 AHRIGQLKPVYVYRLVHQYTIEEKIIERATLKLQLDTAVIQ 666


>gi|330842982|ref|XP_003293445.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
 gi|325076230|gb|EGC30034.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
          Length = 1044

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K   L+ I++K    N + +++       L  L+                  +++  
Sbjct: 867  TSAKCIKLKEILQKEIHENKSKVLIFSQMTKVLDILEDVLSIFGESFTRLDGQTPVNERQ 926

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  + N   IP+      + G G+NL    N+++F+ L ++ +     ++R    R  
Sbjct: 927  DIIDHFTNSKDIPVFLLSTNAGGLGINLTC-ANVVIFYDLSFNPQ-----VDRQAEDRAH 980

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +R V VY L+ +NT+D  +      K  + D +L 
Sbjct: 981  RLGQEREVIVYKLLTENTVDIDIFNSANEKKKLNDNILE 1019


>gi|317032364|ref|XP_001394676.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1137

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHW-KEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KA 87
            +Y +      K +   KI+ L  I+  +++    IV   F S L +++            
Sbjct: 890  IYLNAGDDDNKILPSTKIRRLMKILRRESSDHKFIVFSVFTSMLDKIEPFLKRTGIGYAR 949

Query: 88   FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            +  G   D    ++ +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 950  YDGGMRNDHREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1008

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y +I + T++E ++     K  + ++ +  
Sbjct: 1009 AIDRV-----HRLNQTVDVKIYKMIIKGTVEERIIDLQDRKRELANVTIEG 1054


>gi|254577539|ref|XP_002494756.1| ZYRO0A08932p [Zygosaccharomyces rouxii]
 gi|238937645|emb|CAR25823.1| ZYRO0A08932p [Zygosaccharomyces rouxii]
          Length = 1188

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 50/232 (21%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG----AVYYDEEKHWKEVH---- 52
            +K+Y +FQ++   +L            K   C +  N      +   + +  + V     
Sbjct: 962  LKEYLEFQKQKELEL------------KCPNCREPVNKNYFFTLMLKDGESPQVVPLREV 1009

Query: 53   --DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQ--------------KAFPQGR 92
                KI+AL     ++ E +    I+V   F+S L  L+                F    
Sbjct: 1010 AKSAKIEALLKHCSILQETSPGEQIVVFSQFSSFLDILETELANTFLGNGVKVYKFDGRL 1069

Query: 93   TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             L +    ++ ++        +L     + G GLNL    +       WW      Q I+
Sbjct: 1070 NLKERAAVLENFSTKDFDNQKVLLMSLKTGGVGLNLTC-ASYAFMMDPWWSPSMEDQAID 1128

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            RI      + G    V V   I +N+I+E +L+    K TI +  ++A + E
Sbjct: 1129 RI-----HRIGQINQVKVTRFIVENSIEEKMLKIQERKRTIGEA-MDADEDE 1174


>gi|71033491|ref|XP_766387.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353344|gb|EAN34104.1| hypothetical protein TP01_0866 [Theileria parva]
          Length = 1816

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA--VYYDEEKH-WKEV---H 52
            + Y +  R              + +S    C++L    N     Y  E++  W +     
Sbjct: 1065 RNYEELARN----------SGGSRSSLQNICMELKKVCNHPFLCYEPEDRQVWLQGLIYG 1114

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCT 100
              KI  L+ ++++       +++       L  +      + F   R       +     
Sbjct: 1115 SGKICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKA 1174

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N+ +           + G G+NL    + ++ +   W+ +   Q   R       +
Sbjct: 1175 MDHFNDPQSDDFCFLLSTKAGGLGINLT-SADTVIIYDSDWNPQNDLQAEAR-----AHR 1228

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             G  + V +Y L+ +++I++ +L+R +TK  +  L++  L K  
Sbjct: 1229 IGQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRG 1272


>gi|169863208|ref|XP_001838226.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Coprinopsis cinerea okayama7#130]
 gi|116500699|gb|EAU83594.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Coprinopsis cinerea okayama7#130]
          Length = 904

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD 97
              K+  L+ ++ +       +++   F + L  ++    +               LD+ 
Sbjct: 624 ASGKMMVLDRLLRELFRRGHKVLLFSQFTTMLDIIEDWAVENMGWSICRIDGSSSPLDRK 683

Query: 98  PCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +    G  P    L      + G G+NL    + ++F+   W+ +   Q       
Sbjct: 684 AEMERFQTGGDDPDAPRLFLLSTRAGGLGINL-VAADTVIFYDQDWNPQMDAQA-----Q 737

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V ++ L++ +TI+  ++QR   K  ++ L++   K
Sbjct: 738 DRAHRIGQTKPVLIFRLVSAHTIETNIMQRAAEKRKLEALVIAKGK 783


>gi|156843751|ref|XP_001644941.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115595|gb|EDO17083.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1507

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  +           +         +   
Sbjct: 720 SSGKMVLLDQLLTRLKRDGHRVLIFSQMVRMLDIMGDYLSIKGINFQRLDGTVPSAQRRI 779

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 780 AIDHFNAPDSNDDVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 833

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 834 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 872


>gi|66362430|ref|XP_628179.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
 gi|46227356|gb|EAK88291.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
          Length = 2055

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L+ ++ +     + +++       L  +           +        +     + 
Sbjct: 873  KLCLLDKLLSRLREKGSRVLIFSQMVRMLNIISEFLVLRGFRHQRLDGTMGKELRKKAMD 932

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G G+NL    + ++ +   W+ +   Q   R       + G
Sbjct: 933  HFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQNDLQAEAR-----AHRIG 986

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             K+ V +Y L+ +++I+E +L+R +TK  +  L++  L
Sbjct: 987  QKKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGL 1024


>gi|323309655|gb|EGA62863.1| Swr1p [Saccharomyces cerevisiae FostersO]
          Length = 1390

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
            +    QL         +K   +    K++ L +++++   N    ++       L  L++
Sbjct: 1221 SNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQ 1280

Query: 87   AF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                         G T  +D   + + +N + +I +      S G G+NL  G + ++F+
Sbjct: 1281 FLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFY 1339

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               W+    +Q  +R       + G  R V +Y  ++++TI+  +L++ + K TI
Sbjct: 1340 DSDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEHTIESNILKKSQPKKTI 1389


>gi|156051590|ref|XP_001591756.1| hypothetical protein SS1G_07202 [Sclerotinia sclerotiorum 1980]
 gi|154704980|gb|EDO04719.1| hypothetical protein SS1G_07202 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1805

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLAR-----LQKAFPQGRTL--------DKDPCTIQEWN-EGKIPLLFA 114
               +V       L       L+K  P  + L        +K    + ++N +    +L  
Sbjct: 1586 HRALVFCQMKEMLDMVQNDVLKKMLPSVQFLRMDGSVDANKRQDIVNKFNSDPSYDVLLL 1645

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY LI + 
Sbjct: 1646 TTSVGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRG 1699

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E +L   R K  +   ++N
Sbjct: 1700 TLEEKILSLQRFKIDVASTVVN 1721


>gi|298710909|emb|CBJ49262.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1332

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-IQ 102
            K+K+LE ++ K +     ++V     + L  L+              G T  K+    I 
Sbjct: 876  KMKSLETLLAKFHETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARIN 935

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N  +  + +      + G GLNL +  + +V + + W+     Q        R  + G
Sbjct: 936  EFNSDRAGVFVFLISTRAGGQGLNL-HTASRVVLYDVNWNPALGLQA-----QDRAYRIG 989

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             KR V V+ LI++ TI+E+   R   K  I    +
Sbjct: 990  QKRKVAVFRLISKGTIEEMCYMRQIYKLQITSAAM 1024


>gi|260801499|ref|XP_002595633.1| hypothetical protein BRAFLDRAFT_200949 [Branchiostoma floridae]
 gi|229280880|gb|EEN51645.1| hypothetical protein BRAFLDRAFT_200949 [Branchiostoma floridae]
          Length = 1464

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAH 115
               +++       L  +++                T+      I ++N+   I +    
Sbjct: 863 QGHRVLLFSQSKQMLDLMEEFVQDQSYTYMRMDGTTTISSRQPKITKFNKDTSIFVFLLT 922

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N ++ F   W+     Q  ER       + G  + V +Y L+   T
Sbjct: 923 TRVGGLGVNLT-GANRVIIFDPDWNPSTDMQARERAW-----RIGQSKDVTIYRLLTTGT 976

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E +  R   K  + + +L
Sbjct: 977 IEEKIYHRQIFKQFLTNRVL 996


>gi|321263641|ref|XP_003196538.1| helicase [Cryptococcus gattii WM276]
 gi|317463015|gb|ADV24751.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 926

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 67  NAAPIIVAYHFNSDLARLQ------KAFPQGRTLDKDPC-----TIQEWNEGK-----IP 110
               +++   F + L  ++      K +   R             + E+N GK       
Sbjct: 662 KGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTSQESRREQMDEFNGGKDDPDACK 721

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL    + ++FF   W+ +   Q        R  + G  + V V+ L
Sbjct: 722 LFLLSTRAGGLGINL-VSADTVIFFDQDWNPQMDLQA-----QDRAHRIGQTKPVLVFRL 775

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++ +TI+  +L +   K  ++ L+++  K
Sbjct: 776 VSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|260785484|ref|XP_002587791.1| hypothetical protein BRAFLDRAFT_92236 [Branchiostoma floridae]
 gi|229272944|gb|EEN43802.1| hypothetical protein BRAFLDRAFT_92236 [Branchiostoma floridae]
          Length = 206

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 85/210 (40%), Gaps = 37/210 (17%)

Query: 18  ENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHWKEVHDEKIKALE 60
           ++I+  N A K+ K       +QL   AN    +D                +  K+  L+
Sbjct: 2   KDIDVVNGAGKSDKMRLLNILMQLRKCANHPYLFDGAEPGPPYTTDTHLVQNSGKMCILD 61

Query: 61  VIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEG- 107
            ++   +A  + +++       L  L         Q     G+T  ++    I ++N   
Sbjct: 62  KLLPRLQAEGSRVLIFSQMTRMLDILEDYCIWKGWQYCRLDGQTPHEERQAQINDYNRPG 121

Query: 108 -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    ++++ +   W+ +   Q ++R       + G K+ V 
Sbjct: 122 SDKFIFMLSTRAGGLGINL-ATADVVLLYDSDWNPQVDLQAMDR-----AHRIGQKKQVR 175

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ +IA NT+++ +++R  TK  +  +++ 
Sbjct: 176 VFRMIADNTVEDRIVERAETKLKLDTIVIQ 205


>gi|312220751|emb|CBY00692.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1566

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-E 106
             + E  +    +V       L  +Q                  G    K    + ++N +
Sbjct: 1331 DLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGVEATKRQEIVNKFNSD 1390

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V 
Sbjct: 1391 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVN 1444

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  +   ++N
Sbjct: 1445 VYRIVTRGTLEEKILNLQRFKIDVASTVVN 1474


>gi|241949239|ref|XP_002417342.1| chromatin remodelling complex ATPase chain ISW1, pseudogene,
           putative [Candida dubliniensis CD36]
 gi|223640680|emb|CAX44987.1| chromatin remodelling complex ATPase chain ISW1, pseudogene,
           putative [Candida dubliniensis CD36]
          Length = 1017

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 43/225 (19%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q+ LY  +  ++I+A N A+             +QL               G  Y  +E
Sbjct: 374 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 433

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 + +K+  L+ +++  +   + +++    +  L  L         Q     G+T 
Sbjct: 434 HLV--FNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTE 491

Query: 95  DKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R 
Sbjct: 492 HSDRINAIDEYNKPGSEKFIFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR- 549

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V+  I +  I+E VL+R   K  +  L++ 
Sbjct: 550 ----AHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQ 590


>gi|213408989|ref|XP_002175265.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
 gi|212003312|gb|EEB08972.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
          Length = 850

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 69  APIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              I+   F S L  L+               Q +  D++    +   + ++ +L     
Sbjct: 690 RKTIIFSQFTSMLDLLEPHLRNAGIGFVRYDGQMKNKDREDALNKLRTKSEVQVLLCSLK 749

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               GLNL    + ++   +WW+    +Q I+R+      + G K  V VY +   +T++
Sbjct: 750 CGALGLNLTC-ASRVILLDVWWNPAVEEQAIDRV-----HRIGQKHDVDVYKITIADTVE 803

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E ++     K  + D  +
Sbjct: 804 ERIVALQDKKRELADGAI 821


>gi|138894942|ref|YP_001125395.1| Patative DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|196248491|ref|ZP_03147192.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
 gi|134266455|gb|ABO66650.1| Patative DNA/RNA helicase SNF2 family [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212216|gb|EDY06974.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
          Length = 874

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 35/214 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYD-EEKHWKEVHDEKIKALEV 61
            +  R +    +   +   N      +  QL    GA+    E+  +KEV   K+K    
Sbjct: 650 KEIARSMLATKESGQVAILN---MITRLRQLYGHPGAIIPKYEQLSYKEVP--KLKETMH 704

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK- 108
           IIE         ++   F      L++ F            G T ++    +Q +NE + 
Sbjct: 705 IIEAIRQKGEKALIFTEFRKLHFLLKRIFMETYGISVPVIDGDTKNRQ-LIVQHFNETQG 763

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++   P + G GL +    N ++ ++ WW+     Q  +R       + G ++ V+VY
Sbjct: 764 FGIMILSPKAAGVGLTIT-SANHVIHYTRWWNPAVENQATDR-----AYRIGQQKDVYVY 817

Query: 169 YLIA-------QNTIDELVLQRLRTKSTIQDLLL 195
           ++I        Q T++EL+ + L +K  + + ++
Sbjct: 818 HIITRDSSHFPQGTVEELMHELLESKRHLAENVI 851


>gi|167535306|ref|XP_001749327.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772193|gb|EDQ85848.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1151

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
           H  K+  L  ++ +       +++       L  +                  +T D+  
Sbjct: 556 HSGKLACLNDLLPRLRRGGHRVLIFSQSRKFLQAVASVLDHHGLTFQQLDGSVKTADERQ 615

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++N+    ++  +       G GL L  G N ++     W+     Q ++R     
Sbjct: 616 ALVDKFNKATTDELFAMLLTTQVGGVGLTLT-GANRVIICDPSWNPSVDAQAVDR----- 669

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R V VY L+   TI+E + ++   K ++Q   +
Sbjct: 670 AYRIGQTREVLVYRLVTCGTIEEKMYRKQIFKGSLQRSAM 709


>gi|327281454|ref|XP_003225463.1| PREDICTED: lymphoid-specific helicase-like [Anolis carolinensis]
          Length = 811

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHP 116
              +++       L  L                  +  +    + ++N+  ++ +     
Sbjct: 589 GHKVLLFSQMTQMLDILMDYCYLRNYQFSRLDGSMSYTERDENMSKFNKDQEVFIFLLST 648

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ +   W+ +   Q  +R       + G  + V VY  +  NTI
Sbjct: 649 RAGGLGINLT-AADTVIIYDSDWNPQCDLQAQDRC-----HRIGQTKPVVVYRFVTANTI 702

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D+ +++    K  ++ L++
Sbjct: 703 DQKIVETAAAKRKLEKLVI 721


>gi|302411025|ref|XP_003003346.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
           VaMs.102]
 gi|261358370|gb|EEY20798.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
           VaMs.102]
          Length = 1117

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWN-EGKIPLLFAH 115
               ++       L  ++K      T           ++K    I ++N + +I +    
Sbjct: 698 GHKTLLFSQSKMMLNVIEKFLGGLETVKYVRMDGETSIEKRQSLIDQFNTDPEIDIFLLT 757

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL  G N ++ F   W+     Q  ER       + G  R+V +Y L+   T
Sbjct: 758 TRTGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RLGQTRSVEIYRLMTAGT 811

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           I+E +  R   K  + + +L   K+  
Sbjct: 812 IEEKIYHRQIFKQFMTNKVLKDPKQRA 838


>gi|189204870|ref|XP_001938770.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985869|gb|EDU51357.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1246

 Score = 95.4 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDP 98
             K++ ++ ++   K      ++       L  LQK   Q                D+  
Sbjct: 757 SGKMQVVKELLSLWKKGGHKTLLFAQHRIMLDILQKFISQLPDINWRRMDGDTPIKDRQN 816

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   + +        G G+NL  G N ++ +   W+     Q  ER       +
Sbjct: 817 LVDEFNNNPDLHVFLLTTKVGGLGVNLT-GANRVIIYDPDWNPSTDIQARERSW-----R 870

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L++  TI+E +  R   K  + + +L   K+ 
Sbjct: 871 LGQKREVEIYRLMSAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 913


>gi|194899384|ref|XP_001979240.1| GG14296 [Drosophila erecta]
 gi|190650943|gb|EDV48198.1| GG14296 [Drosophila erecta]
          Length = 1077

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 49   KEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
                  KI  +  I++    K++    IV   + S L  L++   +         G    
Sbjct: 878  IHRPSSKINMVMQILKTSILKSSDDKAIVVSQWTSVLDILREHLSKDGVPTLSLNGSIPV 937

Query: 96   KDPCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K+   I  ++NE      +L     + G GLNL  G N L+   L W+ +   Q  +RI 
Sbjct: 938  KNRQDIVNQFNERNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI- 995

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 + G K+ V +Y  +  +T+++ +      K  + D +L   K+
Sbjct: 996  ----YRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAKR 1039


>gi|159110197|ref|XP_001705360.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            ATCC 50803]
 gi|157433443|gb|EDO77686.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            ATCC 50803]
          Length = 2645

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 71/201 (35%), Gaps = 29/201 (14%)

Query: 19   NIEAFNSASKTVKCLQL---ANGAVYYDEEK------HWKEVHDEKIKALEVIIEKAN-- 67
              +++NS       +QL    N      + K              K + L+ +++K N  
Sbjct: 1545 TAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTANLKDIVDGSGKFQVLDKLLDKLNSE 1604

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++       L  L+          +      T ++    I  +NE   K  +    
Sbjct: 1605 GHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKNSKDFIFLLS 1664

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    + ++ F   ++     Q   R+      + G  + V +Y L+ +++
Sbjct: 1665 TRSGGQGINL-ATADTVIIFDADYNPHNDLQAAGRV-----HRIGQSKPVTIYRLVTRDS 1718

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E +L     K  +   ++ 
Sbjct: 1719 VEERILDIGHRKLMLDYAIIQ 1739


>gi|302829332|ref|XP_002946233.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
           nagariensis]
 gi|300269048|gb|EFJ53228.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
           nagariensis]
          Length = 1596

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 42/226 (18%)

Query: 6   KFQRELYCDLQGENIE---AFNSASKTVKCLQ--------------LANGA------VYY 42
           K ++ L+C L  E +E   A+ ++++  + L+              + N           
Sbjct: 701 KMEQVLFCTLVSEQLELYRAYLASTEVGEILEGSRRALCGIDILRKICNHPDLLERVTAQ 760

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQ 90
           D E +       K++  E ++   +      ++       L  L+K              
Sbjct: 761 DAEDYGNPARSGKLRVAERVLTSWHTARQKALLFCQTQQMLDILEKLVAGRGWSYHRMDG 820

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G  +   P  I ++N    + +        G G+NL  G   ++ +   W+     Q  E
Sbjct: 821 GTPVAVRPRLIDDFNTNPDVFVFLLTTKVGGLGVNLT-GATRVMLYDPDWNPSTDIQARE 879

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + G   +V +Y LI   TI+E +  R   KS + + +L
Sbjct: 880 RAW-----RIGQSHSVTIYRLITAGTIEEKIYHRQIYKSFLTNKVL 920


>gi|302814766|ref|XP_002989066.1| hypothetical protein SELMODRAFT_450679 [Selaginella moellendorffii]
 gi|300143167|gb|EFJ09860.1| hypothetical protein SELMODRAFT_450679 [Selaginella moellendorffii]
          Length = 1043

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           K     ++V       L  ++          +      ++ + P  I E+NE   + +  
Sbjct: 645 KDQGHRVLVFCQTQQMLDIVEIFVESQGYTYRRMDGSTSVKQRPALIDEFNESSHVFVFL 704

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ F   W+     Q  ER       + G  + V VY LI +
Sbjct: 705 LTTKVGGLGTNLT-GANRVIIFDPDWNPSTDMQARERAW-----RIGQTKDVIVYRLITR 758

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V  R   K  + + +L
Sbjct: 759 GTIEEKVYHRQIYKQFLTNKIL 780


>gi|159467545|ref|XP_001691952.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158278679|gb|EDP04442.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1254

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 17/138 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
            KAL  ++E+   AP  V+Y               G         +Q +N +  I +L   
Sbjct: 1128 KALLDLVERDLLAPYGVSYL----------RLDGGVEAGARFAVVQRFNADPTIDVLLLT 1177

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL    + +VF    W+  +  Q ++R       + G +R V VY ++ + T
Sbjct: 1178 TGVGGVGLNLT-AADTVVFLEHDWNPMKDMQAMDR-----AHRLGQRRTVNVYRILTRGT 1231

Query: 176  IDELVLQRLRTKSTIQDL 193
            ++E VL   + K  + + 
Sbjct: 1232 LEERVLGLQQFKKDVAEA 1249


>gi|308160430|gb|EFO62921.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            P15]
          Length = 2647

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 71/201 (35%), Gaps = 29/201 (14%)

Query: 19   NIEAFNSASKTVKCLQL---ANGAVYYDEEK------HWKEVHDEKIKALEVIIEKAN-- 67
              +++NS       +QL    N      + K              K + L+ +++K N  
Sbjct: 1547 TAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTASLRDIVDGSGKFQVLDKLLDKLNSE 1606

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++       L  L+          +      T ++    I  +NE   K  +    
Sbjct: 1607 GHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKNSKDFIFLLS 1666

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    + ++ F   ++     Q   R+      + G  + V +Y L+ +++
Sbjct: 1667 TRSGGQGINL-ATADTVIIFDADYNPHNDLQAAGRV-----HRIGQSKPVTIYRLVTRDS 1720

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E +L     K  +   ++ 
Sbjct: 1721 VEERILDIGHRKLMLDYAIIQ 1741


>gi|156847192|ref|XP_001646481.1| hypothetical protein Kpol_1048p54 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117158|gb|EDO18623.1| hypothetical protein Kpol_1048p54 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1902

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1706 FKKYMPSVTYMRLDGSVDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1764

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY +I + T++E ++   + K  I   +
Sbjct: 1765 IEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1819

Query: 195  LN 196
            +N
Sbjct: 1820 VN 1821


>gi|47206405|emb|CAG01534.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1491

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGRTL 94
           Y+E+         K+  L+ ++ +       +++       L  L     +K +P  R  
Sbjct: 810 YEEQLQAVVRGSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTRKRYPFQRLD 869

Query: 95  DK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      +  +N EG           + G G+NL    + +V F   W+ +   Q 
Sbjct: 870 GSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQA 928

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R       + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 929 QAR-----AHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRM 974


>gi|330922223|ref|XP_003299753.1| hypothetical protein PTT_10809 [Pyrenophora teres f. teres 0-1]
 gi|311326467|gb|EFQ92163.1| hypothetical protein PTT_10809 [Pyrenophora teres f. teres 0-1]
          Length = 1302

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDL--------------ARLQKAFPQGRT- 93
              K   LE +++    A    I++   F   L               R +     G T 
Sbjct: 657 ASGKFILLEKLLKHTVFAQGKKILIFSSFTRTLDHCEDLLSLISNHGERFKSLRLDGSTS 716

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    I+ +N+      ++     + G G+NL    + ++F    W+ +   Q   R 
Sbjct: 717 RARRNLDIRLFNQKGSDYKVMLLSTRAGGLGINLTSAED-VIFLDEDWNPQITLQAEAR- 774

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 + G  + V +Y L  Q T++E ++ R+R K  +   +  +++ 
Sbjct: 775 ----AHRIGQTKKVTIYKLCTQGTVEEQMMGRIRKKLYLSAKITESMQS 819


>gi|301622634|ref|XP_002940630.1| PREDICTED: hypothetical protein LOC100494134 [Xenopus (Silurana)
           tropicalis]
          Length = 914

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 86  KAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                G T  +    + + +N + +I        S G G+NL  G + ++F+   W+   
Sbjct: 19  YLRLDGSTRVEQRQVLMERFNMDRRIFCFILSTRSGGVGINLT-GADTVIFYDSDWNPTM 77

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q  +R       + G  R V +Y L+++ T++E +L++ + K  + D+ +  
Sbjct: 78  DAQAQDRC-----HRIGQTRDVHIYRLVSERTVEENILKKAQQKRMLGDMAIEG 126


>gi|296123773|ref|YP_003631551.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296016113|gb|ADG69352.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 872

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---APIIVAYHFNSDLAR 83
            + + C   AN     D++         K+  L  + ++         IV   +   L  
Sbjct: 598 KELLYCRLAANSPELVDDQ---IVGESSKLDRLSEMFDEMFEGHFEKAIVFSEWTRMLDL 654

Query: 84  LQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           ++               Q    ++     Q  ++    +L A  A+   GLNLQ   +I+
Sbjct: 655 IEPLLDSRNLPYVRIDGQVSQRERAASVSQFEDDPGTRVLLASNAAA-TGLNLQ-AASIV 712

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +   L W+    +Q I R       + G ++ V VY L+ + T +E +L+ L  K  +  
Sbjct: 713 INVDLPWNPAILEQRIAR-----AHRMGQEKPVQVYVLVTEETFEERLLKTLEGKEQLAR 767

Query: 193 LLLN 196
            +L+
Sbjct: 768 AVLD 771


>gi|294631185|ref|ZP_06709745.1| SNF2 domain-containing protein [Streptomyces sp. e14]
 gi|292834518|gb|EFF92867.1| SNF2 domain-containing protein [Streptomyces sp. e14]
          Length = 730

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 30/197 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A Y   EK        K+  L  I+ +A  N    
Sbjct: 496 ELSASDEEAYREAVRAGNFMAMRRAA-YARPEK------SAKLDRLREIVREAAENGRKT 548

Query: 72  IVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
           +V  HF   L  + +A                      +    + ++   + P +L A  
Sbjct: 549 VVFSHFKDVLGVVGEALAPAPGGSVPVFGPLTGAVPAARRQRIVDDFGGVRGPAVLLAQI 608

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNLQ   +++V           QQ + R       + G  R V V+ L+A   +
Sbjct: 609 QAAGVGLNLQ-AASVVVLCEPQVKPTAEQQAVAR-----AHRMGQIRPVRVHRLLATGGV 662

Query: 177 DELVLQRLRTKSTIQDL 193
           DE +++ L  KS + D 
Sbjct: 663 DERLVRLLERKSRLFDA 679


>gi|254577895|ref|XP_002494934.1| ZYRO0A13244p [Zygosaccharomyces rouxii]
 gi|238937823|emb|CAR26001.1| ZYRO0A13244p [Zygosaccharomyces rouxii]
          Length = 1883

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 33/212 (15%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK--IKA 58
            +KQ   + ++ + DL        ++A K +    L             ++  D K  +  
Sbjct: 1604 LKQVESYLKQTHMDLHD-----ISNAPKLLALRNLLFEC------GIGEQDIDRKSPVNQ 1652

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN 105
            L   +   +    ++       L  ++                            ++++N
Sbjct: 1653 LPSTVNVISQHRALIFCQLKDMLDMVENDLFKRYMPSVTYMRLDGSVEARDRQKVVRKFN 1712

Query: 106  E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E   I  L       G GLNL  G + ++F    W+     Q ++R       + G K+ 
Sbjct: 1713 EDPSIDCLLLTTKVGGLGLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKV 1766

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY ++ + T++E ++   + K  I   ++N
Sbjct: 1767 VNVYRIVTKGTLEEKIMGLQKFKMNIASTVVN 1798


>gi|198437252|ref|XP_002124935.1| PREDICTED: similar to transcription termination factor, RNA
            polymerase II [Ciona intestinalis]
          Length = 1071

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
            +  L+ +  +      ++   + S L  L       +             K    +  +N
Sbjct: 904  MDTLKKLSVEKPDDKCVIISQWTSMLNILAHHLAAAKFSYAVIDGSVNARKRMELVDNFN 963

Query: 106  EG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +   K  ++     + G GLNL  GGN L    + W+    +Q  +RI      + G K+
Sbjct: 964  KNPVKPKIMLISLQAGGVGLNL-IGGNHLFLLDMHWNPALEKQAFDRI-----YRVGQKK 1017

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VFV+  I + T++E +LQ    K +I   ++  
Sbjct: 1018 EVFVHKFIMEETVEEQILQLQERKLSIAKAVMEG 1051


>gi|312376441|gb|EFR23522.1| hypothetical protein AND_12719 [Anopheles darlingi]
          Length = 875

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 59  LEVIIEKANAAPIIVAYHFNSD-LARLQKAF------PQGRTLDKD-PCTIQEWNEG--K 108
           LE +I K     I+  Y+   D +A L + +        G T+  D    +  +N     
Sbjct: 594 LEDLIVKQEKVVIVSYYNKTLDMIAGLCEHYNYKHSRLDGSTVASDRSKIVATFNNAASD 653

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +L     + G GLNL  G + LV +   W+     Q + R+      + G  R VF+Y
Sbjct: 654 IFILLLSAKAGGAGLNL-IGASRLVLYDNDWNPANDLQAMSRVW-----RDGQTRTVFIY 707

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+   +I+E + QR  +K+++   +++
Sbjct: 708 RLLTAFSIEERIFQRQISKTSLSGTVVD 735


>gi|313870791|gb|ADR82283.1| DNA repair protein [Blumeria graminis f. sp. tritici]
          Length = 883

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 30/189 (15%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQ 85
           +K+ K  QL N A               KI  L  I+ E+ +    IV   F S L  ++
Sbjct: 654 TKSSKVPQLTNVA------------TSTKITQLIKILKEEVHEHKFIVFSQFTSMLNLIE 701

Query: 86  KAF-----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F              R   ++    +  N+ K  +L         GLNL     +++ 
Sbjct: 702 PFFHANDLVFSRYDGSMRNDSREASLAKLRNDKKCRILLCSLKCGSLGLNLTAATRVVIL 761

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +W+    +Q I+R+      +   K  V +Y +    T++E +L+    K  + +  
Sbjct: 762 -EPFWNPFVEEQAIDRV-----HRLTQKTDVIIYKITISKTVEERILELQDKKRALANET 815

Query: 195 LNALKKETI 203
           +   K   +
Sbjct: 816 IEGGKNGGV 824


>gi|312220846|emb|CBY00787.1| similar to SNF2 family ATP-dependent chromatin-remodeling factor
            snf21 [Leptosphaeria maculans]
          Length = 1416

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEVHD- 53
            K Y +     R +  D +G        ++  ++  +L N    ++E +      K  +D 
Sbjct: 807  KLYKQLVTHNRFMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEEVMNPTKSTNDL 866

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYH------FNSDLARLQK----AFPQGRTLDK 96
                  K + L+ I+   +A    +++ +          D  RL+             D 
Sbjct: 867  LWRSAGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMQYLRLDGATKADD 926

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 927  RSELLKLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 980

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 981  RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 1025


>gi|255712323|ref|XP_002552444.1| KLTH0C05038p [Lachancea thermotolerans]
 gi|238933823|emb|CAR22006.1| KLTH0C05038p [Lachancea thermotolerans]
          Length = 894

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 34/211 (16%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA-------------- 58
             L   +I   +S +      ++ N      ++ ++ E    K                 
Sbjct: 558 AQLDLSSITPSSSLALITLFKKICNSPSLISQDSYYLENIKSKSDLTGCLGLDSGKLRVL 617

Query: 59  ---LEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
              LE I        +++  ++   L  +Q                    +    ++ +N
Sbjct: 618 LALLENIRSSYPQEKVVIVSNYTQTLDIIQNILTSNRFAFTRLDGNTPTKERDRIVRAFN 677

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               +        S G GLNL  G + LV F   W+     Q + RI      + G +R 
Sbjct: 678 TVPSLFAFLLSAKSGGVGLNL-IGASRLVLFDNDWNPAIDLQAMSRI-----HRDGQRRP 731

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F+Y L+    IDE + QR   K ++    +
Sbjct: 732 CFIYRLLTTGCIDEKIFQRQLMKISLSFRFM 762


>gi|150865383|ref|XP_001384576.2| transcriptional accessory protein involved in TBP (TATA-binding
            protein) regulation helicase MOT1 [Scheffersomyces
            stipitis CBS 6054]
 gi|149386639|gb|ABN66547.2| transcriptional accessory protein involved in TBP (TATA-binding
            protein) regulation helicase MOT1 [Scheffersomyces
            stipitis CBS 6054]
          Length = 1901

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------- 90
              +  +    K K  + +I           ++       L  ++    +           
Sbjct: 1653 GVNDSDYSKSKRKQQQSLISSEGVISEHRALIFCQLKDMLDIVENELLKKYMPSVTYMRM 1712

Query: 91   -GRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G T  +D    ++++NE   I +L       G GLNL  G + ++F    W+     Q 
Sbjct: 1713 DGSTDPRDRQGIVRKFNEDPSIDVLLLTTKVGGLGLNLT-GADTVIFVEHDWNPMSDLQA 1771

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V VY LI ++T++E ++   + K  I   ++N
Sbjct: 1772 MDR-----AHRLGQTKVVNVYRLITKDTLEEKIMGLQKFKINIASTIVN 1815


>gi|299751086|ref|XP_001830045.2| transcription regulator [Coprinopsis cinerea okayama7#130]
 gi|298409213|gb|EAU91710.2| transcription regulator [Coprinopsis cinerea okayama7#130]
          Length = 1441

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            +   K+  L+ ++ +   +   +++       L  L           +        D  
Sbjct: 686 VMSSGKMVLLDKLLARLRQDGHRVLIFSQMVRMLDILSDYMTLRGYQHQRLDGMVGSDLR 745

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N    P         + G G+NL    + ++ F   W+ +   Q + R     
Sbjct: 746 KKAIAHFNAENSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR----- 799

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V VY  ++++T++E VL+R + K  ++  ++N +     H+
Sbjct: 800 AHRIGQKSHVSVYRFVSKDTMEEDVLERAKRKMVLEYAIINQMDTTQAHL 849


>gi|238882009|gb|EEQ45647.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            albicans WO-1]
          Length = 1680

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANG-AVYYDEEKHW---KEVH 52
            K Y +  R               +   N+ ++ ++  ++ N   VY + E       E +
Sbjct: 1027 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1086

Query: 53   DE------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
            D+      K + L+ ++ K  A    +++ +          D  R   ++     G T  
Sbjct: 1087 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1146

Query: 96   KDPCTI-QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D   + + +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1147 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1200

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1201 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1247


>gi|171686228|ref|XP_001908055.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943075|emb|CAP68728.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1895

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 32/209 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y   Q+  +   QG ++E    A K      L        E +             + 
Sbjct: 1618 RAYDDTQK--FLARQGTSLEDPAHAPKLTALRDLLVECGIGVEGQESS----------DP 1665

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQG-------------RTLDKDPCTIQEWN-EG 107
            +         ++       L  +Q    +G                ++    + ++N + 
Sbjct: 1666 LYTPIKPHRALIFCQMKEMLDMVQNTVLKGMLPSTQYLRLDGSVEANRRQDIVNKFNSDP 1725

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1726 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNV 1779

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1780 YRLITRGTLEEKILSLQRFKIDVASTVVN 1808


>gi|170581274|ref|XP_001895612.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158597372|gb|EDP35538.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1965

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L  ++          ++       L  LQ                  +++     +
Sbjct: 1336 KLQVLNSLLHDLFLYKHRCLIFTQMARVLDILQAFLSFHGYQYFRLDGTTGIEQRQAMTE 1395

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1396 RFNADPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1449

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y L+++ TI+E +L++   K  + ++ ++
Sbjct: 1450 TRNVTIYRLVSERTIEENILRKAMQKRRLGEMAID 1484


>gi|156088007|ref|XP_001611410.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
 gi|154798664|gb|EDO07842.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
          Length = 860

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKD 97
           +   K++ +  II++        ++   F   L            +L+     G      
Sbjct: 696 LESAKVQEMFKIIDRVEQAGKKALIFSQFTMYLDLLETCLGLHKPQLEYLRLDGGHNPST 755

Query: 98  PCTI-QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I + + N+  I LL     + G GLNL    + ++   L W+     Q        R
Sbjct: 756 RTDIVERFTNDPNITLLLISTKAGGTGLNLTV-ASTVILMDLDWNPHNDAQA-----ENR 809

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G    V VY L+ ++TI+E + +  + K  + D 
Sbjct: 810 SHRIGQTEPVDVYKLMCEDTIEEYIWECCQRKLLLDDA 847


>gi|330940925|ref|XP_003306005.1| hypothetical protein PTT_19012 [Pyrenophora teres f. teres 0-1]
 gi|311316706|gb|EFQ85893.1| hypothetical protein PTT_19012 [Pyrenophora teres f. teres 0-1]
          Length = 1393

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
            K Y +     R +  D +G        ++  ++  +L N    ++E +            
Sbjct: 813  KLYKQLVTHNRLMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEDVMNPTKSTNDL 872

Query: 53   ----DEKIKALEVIIE--KANAAPIIVAYH------FNSDLARLQKAF----PQGRTLDK 96
                  K + L+ I+   +A    +++ +          D  RL+             D 
Sbjct: 873  LWRASGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMMYLRLDGATKADD 932

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 933  RSDLLRLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 986

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 987  RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 1031


>gi|257058201|ref|YP_003136089.1| SNF2-related protein [Cyanothece sp. PCC 8802]
 gi|256588367|gb|ACU99253.1| SNF2-related protein [Cyanothece sp. PCC 8802]
          Length = 1047

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 26/214 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKH---WKEVHDEKIK 57
             Y K       +L+ +          S  VK  Q+ N    + +EK              
Sbjct: 814  LYQKLVDSSLEELEDKTGIQRQGLILSLLVKLKQICNHPAQFLKEKQLNFPHRSGKLMRL 873

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTI--QEW 104
               +          ++   F S+  +L +            F  G T  +    +  +  
Sbjct: 874  EEMLEELIEEGDRALIFTQF-SEWGKLLQPYLMAKFSQEVLFLHGGTRREQRQVMIDRFQ 932

Query: 105  NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N    P L      + G GLNL    N +     WW+     Q  +R       + G KR
Sbjct: 933  NAPDGPQLFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQKR 986

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+  +   T+++ + + L TK  + +  ++A
Sbjct: 987  NVQVHKFVCTGTLEDKINEMLETKKQLAEQTVDA 1020


>gi|68466749|ref|XP_722570.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|46444555|gb|EAL03829.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|74099650|gb|AAZ99066.1| Swi/Snf core member protein [Candida albicans]
          Length = 1690

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANG-AVYYDEEKHW---KEVH 52
            K Y +  R               +   N+ ++ ++  ++ N   VY + E       E +
Sbjct: 1035 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1094

Query: 53   DE------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
            D+      K + L+ ++ K  A    +++ +          D  R   ++     G T  
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1154

Query: 96   KDPCTI-QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D   + + +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1155 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255


>gi|328698504|ref|XP_001947753.2| PREDICTED: transcription termination factor 2-like [Acyrthosiphon
           pisum]
          Length = 807

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 33/195 (16%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEK-----ANAAPIIVA 74
                L +     DE    K V+D           KIK +  ++ +      N    I+ 
Sbjct: 599 NDLSDLMSCLTLEDEPVKKKHVNDSNIFQKSWISTKIKKICDLVNQKVLNGGNREKAIIV 658

Query: 75  YHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHG 122
             + S L  + K           F     + K    I+E+N   G   +L     S   G
Sbjct: 659 SQWTSFLYLIHKHLVYYNAKMEMFSGAIPIPKRNKIIREFNDPNGGPQILLLSLKSGCVG 718

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N +      W+ +   Q  +RI      + G  + V++Y  I  NTI+  +L 
Sbjct: 719 LNL-MAANHMFLVDNHWNPQLEAQACDRI-----YRIGQTKPVYIYKFICSNTIETRILN 772

Query: 183 RLRTKSTIQDLLLNA 197
             + K  I D L   
Sbjct: 773 IQKHKLKIADNLFKG 787


>gi|302824854|ref|XP_002994066.1| hypothetical protein SELMODRAFT_236903 [Selaginella moellendorffii]
 gi|300138072|gb|EFJ04853.1| hypothetical protein SELMODRAFT_236903 [Selaginella moellendorffii]
          Length = 1046

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           K     ++V       L  ++          +      ++ + P  I E+NE   + +  
Sbjct: 648 KDQGHRVLVFCQTQQMLDIVEIFVESQGYTYRRMDGSTSVKQRPALIDEFNESSHVFVFL 707

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G NL  G N ++ F   W+     Q  ER       + G  + V VY LI +
Sbjct: 708 LTTKVGGLGTNLT-GANRVIIFDPDWNPSTDMQARERAW-----RIGQTKDVIVYRLITR 761

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E V  R   K  + + +L
Sbjct: 762 GTIEEKVYHRQIYKQFLTNKIL 783


>gi|308803887|ref|XP_003079256.1| putative helicase (ISS) [Ostreococcus tauri]
 gi|116057711|emb|CAL53914.1| putative helicase (ISS) [Ostreococcus tauri]
          Length = 869

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
           +   K++ L  ++ +  A  +  ++   +   L  L+                  +++  
Sbjct: 689 LESAKVQRLRELLVELKAKGSRALIFSQWKIMLDILEWVLCHVGFSYARLDGDTAVEERQ 748

Query: 99  CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + ++N     +        + G GLNL  G + ++     ++ +  +Q  +R      
Sbjct: 749 ELVDKFNAKDSSLDTFLLSTRAGGQGLNLT-GADTVILHDCDFNPQIDRQAEDRC----- 802

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G ++ V VY  + + T+DE ++     K  +   +L
Sbjct: 803 HRLGQEKQVTVYRFVTEGTVDEKIVAIAEHKMNLGSTIL 841


>gi|166240364|ref|XP_638342.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988561|gb|EAL64859.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1604

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTV-------KCLQLANGAVYYDEEKHWKEV-- 51
            +  Y          +  ++ E  +   K         +  ++ N    + +E    E   
Sbjct: 875  IAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNIVKQLQKICNHPYLFKDEWDINEDLI 934

Query: 52   -HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF---------PQGRTL-DKDP 98
                K   ++ I+ K +A+   +++       +  +++ F           G T  ++  
Sbjct: 935  RTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERA 994

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + EWN    P  +      + G G+NLQ   + ++ F   W+ +   Q  +R      
Sbjct: 995  HLVVEWNRPDSPFWIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQMDLQAQDRC----- 1048

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G   +V V+ LI+ N+I+E +L R   K  I   ++ A
Sbjct: 1049 HRIGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKIIQA 1089


>gi|123454531|ref|XP_001315018.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121897682|gb|EAY02795.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1656

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LL 112
           KA+   +++     + L  LQ              G+       + I  +N       + 
Sbjct: 530 KADGHRVLIFSQMTNLLDILQDYLAATGYKFLRLDGQVKPSVRQSLIDHFNAPDSDDFIF 589

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G ++ V VY LI 
Sbjct: 590 LLSTRAGGLGINL-NAADTVIIFDSDWNPQNDLQAQARC-----HRIGQQKTVKVYRLIT 643

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + T ++ + +    K  +   +L+  KK+ +  
Sbjct: 644 KGTYEQNMFEISSKKLGLGHAILDKTKKKELDT 676


>gi|218245175|ref|YP_002370546.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            8801]
 gi|218165653|gb|ACK64390.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            8801]
          Length = 1047

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 26/214 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKH---WKEVHDEKIK 57
             Y K       +L+ +          S  VK  Q+ N    + +EK              
Sbjct: 814  LYQKLVDSSLEELEDKTGIQRQGLILSLLVKLKQICNHPAQFLKEKQLNFPHRSGKLMRL 873

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTI--QEW 104
               +          ++   F S+  +L +            F  G T  +    +  +  
Sbjct: 874  EEMLEELIEEGDRALIFTQF-SEWGKLLQPYLMAKFSQEVLFLHGGTRREQRQVMIDRFQ 932

Query: 105  NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N    P L      + G GLNL    N +     WW+     Q  +R       + G KR
Sbjct: 933  NAPDGPQLFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR-----AFRIGQKR 986

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V+  +   T+++ + + L TK  + +  ++A
Sbjct: 987  NVQVHKFVCTGTLEDKINEMLETKKQLAEQTVDA 1020


>gi|242077288|ref|XP_002448580.1| hypothetical protein SORBIDRAFT_06g029476 [Sorghum bicolor]
 gi|241939763|gb|EES12908.1| hypothetical protein SORBIDRAFT_06g029476 [Sorghum bicolor]
          Length = 864

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN- 105
              E I   A     IV   +   L  LQ          +       L+     + E+  
Sbjct: 700 DTTESIPSMALPVKAIVFSQWTGMLDLLQLSLNRNDIQFRRLDGSMCLNLRERQVNEFKT 759

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + K+ ++     +   GLN+    + ++    WW+     Q ++R       + G  R V
Sbjct: 760 DPKVRVMLMSLKAGNLGLNMVDACH-VIMLDPWWNPYAEDQAVDR-----AHRIGQTRPV 813

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V     ++T+++ +L     K  + + 
Sbjct: 814 TVSRFTVKDTVEDRILALQEKKRKMVES 841


>gi|150866039|ref|XP_001385507.2| transcriptional regulator [Scheffersomyces stipitis CBS 6054]
 gi|149387295|gb|ABN67478.2| transcriptional regulator [Scheffersomyces stipitis CBS 6054]
          Length = 1414

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  LE ++ +       +++       L  L           +    G    +   
Sbjct: 660 SSGKMVLLEQLLTRLKKEGHRVLIFSQMVRILDILGDYLSIKGYQFQRLDGGIPSAQRRI 719

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N  +    +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 720 SIDHFNAPESKDFIFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 773

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 774 RIGQKNHVSVYRFVSKDTVEEQILERARKKMILEYAIIS 812


>gi|85083489|ref|XP_957128.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Neurospora crassa OR74A]
 gi|28918214|gb|EAA27892.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Neurospora crassa OR74A]
          Length = 1455

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 33/225 (14%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++     +     
Sbjct: 766 RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 825

Query: 59  LE------VIIEK------ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD 97
           L        ++++      A    +++ +   + +           +Q     G T  +D
Sbjct: 826 LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKAED 885

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    P  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 886 RSELLRLFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 939

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 940 RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 984


>gi|189206215|ref|XP_001939442.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975535|gb|EDU42161.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1271

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDL--------------ARLQKAFPQGRT- 93
              K   LE +++    A    +++   F   L               R +     G T 
Sbjct: 655 ASGKFILLEKLLKHTVFAQGKKVLIFSSFTRTLDHCEDLLSLISNHGERFKSLRLDGSTS 714

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    I+ +N+      ++     + G G+NL    + ++F    W+ +   Q   R 
Sbjct: 715 RARRNLDIRLFNQKGSDYKVMLLSTRAGGLGINLTSAED-VIFLDEDWNPQITLQAEAR- 772

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 + G  + V +Y L  Q T++E ++ R+R K  +   +  +++ 
Sbjct: 773 ----AHRIGQTKKVTIYKLCTQGTVEEQMMGRIRKKLYLSAKITESMQS 817


>gi|328862983|gb|EGG12083.1| hypothetical protein MELLADRAFT_32790 [Melampsora larici-populina
           98AG31]
          Length = 830

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 68  AAPIIVAYHFNSDLARL------QKAFPQGRTLDKDPCT-----IQEWNE----GKIPLL 112
              +++   F S L  +       K +   R             ++++N+        L 
Sbjct: 608 GHKVLIFSQFTSMLDIIHDWANDLKGWKVCRIDGSTSQDERRAQMKDFNQNHGPDGCSLF 667

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ ++  Q  +R+      + G  + V V+ L++
Sbjct: 668 LLSTRAGGVGINL-VAADTVILFDSDWNPQQDLQAQDRV-----HRIGQTKPVLVFRLVS 721

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
            NTI+  +LQ+   K  ++ L++
Sbjct: 722 GNTIETKMLQKASQKRKLETLVI 744


>gi|302916069|ref|XP_003051845.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
 gi|256732784|gb|EEU46132.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
          Length = 1919

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPCT 100
              K + L VI+++A      ++V       L  L+     Q RT+ +             
Sbjct: 1280 SRKTELLTVILDEARKVGDKVLVFSQSLDSLNYLEAMCKMQLRTISRLDGSTAVESRQEE 1339

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+ +NEG   +      + G GLN+ +G N +V F + W+    QQ     G+ R  + G
Sbjct: 1340 IKRFNEGSKEVYLISTTAGGVGLNI-HGANRVVIFDIKWNPTVEQQ-----GIGRAYRLG 1393

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K+ VFVY+L    T ++++  +   K  +   +++
Sbjct: 1394 QKKPVFVYWLTTAGTFEQIIHNQHVFKQQLAARVVD 1429


>gi|46128445|ref|XP_388776.1| hypothetical protein FG08600.1 [Gibberella zeae PH-1]
          Length = 2462

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 19/175 (10%)

Query: 44   EEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTL-------- 94
            +    + +   KI+ L  I+  +      IV   F S L  ++  F + R          
Sbjct: 2235 DPNSPQVLASSKIRELIKILQNEVKEHKFIVFSQFTSMLNLVEPFFRKERFRFVRYDGSM 2294

Query: 95   --DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              D+   +++    + +  +L         GLNL     +++    +W+    +Q I+R+
Sbjct: 2295 KNDEREESLRSLRSDPETRILLCSLKCGSLGLNLTAATRVVIL-EPFWNPFVEEQAIDRV 2353

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
                  +      V +Y L   NT++E +L+    K  + +  +   ++KE + +
Sbjct: 2354 -----HRLTQTVDVIIYKLTVSNTVEERILELQDKKRELAEQAIEGGMRKEALKL 2403


>gi|259146092|emb|CAY79352.1| Chd1p [Saccharomyces cerevisiae EC1118]
 gi|323348857|gb|EGA83095.1| Chd1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1468

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 693 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 752

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 753 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 806

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 807 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|256271313|gb|EEU06383.1| Chd1p [Saccharomyces cerevisiae JAY291]
          Length = 1468

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 693 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 752

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 753 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 806

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 807 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|6321012|ref|NP_011091.1| Chd1p [Saccharomyces cerevisiae S288c]
 gi|418395|sp|P32657|CHD1_YEAST RecName: Full=Chromo domain-containing protein 1; AltName:
           Full=ATP-dependent helicase CHD1
 gi|603404|gb|AAB64691.1| Chd1p: transcriptional regulator [Saccharomyces cerevisiae]
 gi|285811798|tpg|DAA07826.1| TPA: Chd1p [Saccharomyces cerevisiae S288c]
          Length = 1468

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 693 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 752

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 753 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 806

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 807 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|321471114|gb|EFX82087.1| hypothetical protein DAPPUDRAFT_101480 [Daphnia pulex]
          Length = 821

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 47/228 (20%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y   +++   DL+ +  E+ N AS ++   +L       D+E +  E H  KI  L  I
Sbjct: 509 EYQAMKKQS--DLEDDLEESANPASSSLWWSKL-----IPDDEINNIE-HSGKILLLMEI 560

Query: 63  IEKAN--AAPIIVAYHFNSDLARLQKAF---------------------------PQGRT 93
           +         ++V     + L  +++                               G T
Sbjct: 561 LRHCEVIGDKLLVFSQSLTSLDLIEEFLAAEHLKSSAGNASAVSGTWILDTDYFRLDGST 620

Query: 94  LDKDPCTI-QEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +       +N+ K   + L      + G G+NL  G N ++ F   W+    +Q + 
Sbjct: 621 KSAERLKFCTAFNDPKNVRVRLFLISTKAGGIGINLT-GANRVIIFDSSWNPSFDEQSVF 679

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G  +  F+Y  +AQ T++E V  R   K  +   +++ 
Sbjct: 680 RV-----YRLGQTKPCFIYRFVAQGTMEEKVYYRQVEKLALSRRIVDG 722


>gi|226288690|gb|EEH44202.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1912

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K+Y++ Q+    + +  +I     A K      L       D         + ++     
Sbjct: 1634 KRYNEIQK--LLEAKNSHIRDVAHAPKLSALRDL-----LVDCGIGVDPSTEGELDTGAN 1686

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                       K    + ++N + 
Sbjct: 1687 YVSP---HRALVFCQMKEMLDIVQNDVFKKLLPSVQYLRLDGSVEAAKRQNIVNQFNTDP 1743

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1744 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1797

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1798 YRLITRGTLEEKILNLQRFKIDVASTVVN 1826


>gi|225681546|gb|EEH19830.1| modifier of transcription [Paracoccidioides brasiliensis Pb03]
          Length = 1912

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K+Y++ Q+    + +  +I     A K      L       D         + ++     
Sbjct: 1634 KRYNEIQK--LLEAKNSHIRDVAHAPKLSALRDL-----LVDCGIGVDPSTEGELDTGAN 1686

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                       K    + ++N + 
Sbjct: 1687 YVSP---HRALVFCQMKEMLDIVQNDVFKRLLPSVQYLRLDGSVEAAKRQNIVNQFNTDP 1743

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1744 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1797

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1798 YRLITRGTLEEKILNLQRFKIDVASTVVN 1826


>gi|151944881|gb|EDN63140.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
           YJM789]
          Length = 1468

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 693 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 752

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 753 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 806

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 807 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|330932428|ref|XP_003303771.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
 gi|311319996|gb|EFQ88126.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
          Length = 1250

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDP 98
             K++ ++ ++   K      ++       L  LQK   Q                D+  
Sbjct: 757 SGKMQVVKELLSLWKKGGHKTLLFAQHRIMLDILQKFVSQLPDINWRRMDGETPIKDRQN 816

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   + +        G G+NL  G N ++ +   W+     Q  ER       +
Sbjct: 817 LVDEFNNSPDLHVFLLTTKVGGLGVNLT-GANRVIIYDPDWNPSTDIQARERSW-----R 870

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L++  TI+E +  R   K  + + +L   K+ 
Sbjct: 871 LGQKREVEIYRLMSAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 913


>gi|312071855|ref|XP_003138800.1| hypothetical protein LOAG_03215 [Loa loa]
 gi|307766034|gb|EFO25268.1| hypothetical protein LOAG_03215 [Loa loa]
          Length = 1112

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K++ L+ +++  K     +++       L  L+K                 +      
Sbjct: 582 SGKMQVLKALLKLWKQQDQKVLLFSQSRQMLTILEKFVIQEGYEYLRMDGTTPVRSRQLL 641

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++N+  +I +        G G+NL  G N +V F   W+     Q  ER       + 
Sbjct: 642 VEKFNKVDEIFIFLLTTRVGGLGINLT-GANRVVIFDPDWNPSTDIQARERAW-----RI 695

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G +RAV +Y L+   TI+E +  R   K  + + +L
Sbjct: 696 GQERAVTIYRLLTGGTIEEKIYHRQIFKVFLSNRIL 731


>gi|320169070|gb|EFW45969.1| TBP-associated factor 172 [Capsaspora owczarzaki ATCC 30864]
          Length = 2065

 Score = 95.0 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 69   APIIVAYHFNSDLARLQK-----AFPQGRTLDKDP--------CTIQEWNE-GKIPLLFA 114
               +V       L  + K       P    L  D           + ++NE   I LL  
Sbjct: 1833 HRALVFCQTKGMLDLITKQLLDAHMPTVSYLRLDGSIPPLERFAIVTKFNEDPSIDLLLL 1892

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+     Q ++R       + G ++ V VY LI + 
Sbjct: 1893 TTHVGGLGLNLT-GADTVIFIDHDWNPSRDLQAMDR-----AHRIGQRKVVNVYRLITRG 1946

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T++E ++   + K  I + ++
Sbjct: 1947 TLEEKIMSLQQFKLNIANTVI 1967


>gi|325190695|emb|CCA25191.1| DNA repair and recombination protein RAD54 putative [Albugo
           laibachii Nc14]
          Length = 910

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCTIQEWN 105
           +  L  ++ K     I+V  ++   L  +     ++ +P  R        K    +  +N
Sbjct: 537 LDHLMQMMRKETKERIVVVSNYTQTLDLVSLLCSERNWPFVRLDGTISPKKRQQMVDVFN 596

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +             + G GLNL  G N LV F   W+    +Q   R+      + G K+
Sbjct: 597 DPTTHSFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPATDKQAAARVW-----REGQKQ 650

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +VY  +A  +++E + QR  +K  +Q ++
Sbjct: 651 MCYVYRFLATGSLEEKIFQRQLSKEGLQSIV 681


>gi|242072472|ref|XP_002446172.1| hypothetical protein SORBIDRAFT_06g003030 [Sorghum bicolor]
 gi|241937355|gb|EES10500.1| hypothetical protein SORBIDRAFT_06g003030 [Sorghum bicolor]
          Length = 1174

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTL----- 94
             D + +WK     K+  L ++++         IV   F S    L+  F Q         
Sbjct: 998  VDAKNNWK--DSCKVSKLIMMLQSLQKKKEKSIVFSQFTSFFDLLEIPFNQKGIKFLRFD 1055

Query: 95   -----DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       ++E++E     +L     + G GLNL    N +     WW+    +Q I
Sbjct: 1056 GKLSQKHKEKILKEFSETQDKLVLMMSLKTGGVGLNLTAASN-VFLMDPWWNPAVEEQAI 1114

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G KR V V   I ++T++E + Q    K 
Sbjct: 1115 MRI-----HRIGQKREVRVKRFIVKDTVEERLQQVQMRKQ 1149


>gi|116193103|ref|XP_001222364.1| hypothetical protein CHGG_06269 [Chaetomium globosum CBS 148.51]
 gi|88182182|gb|EAQ89650.1| hypothetical protein CHGG_06269 [Chaetomium globosum CBS 148.51]
          Length = 1203

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KAF 88
            Y  +           I  L+ I E       I+   + + L  ++            +  
Sbjct: 1018 YLRDNWEDSAKVTRVIDLLKEIQE--TGEKTIIFSQWTTLLDMIECQIKDKLNLRYCRYT 1075

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +     +D          +  ++     +   GLNL     I++    +W+     Q +
Sbjct: 1076 GKMSRNQRDEAVQDFIENPRNTVMLVSLRAGNAGLNLTVASRIII-CDPFWNPFIEAQAV 1134

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +R       + G +R V V+ ++ + T+++ +L     K  + +  L+  + + + 
Sbjct: 1135 DR-----AHRIGQQREVKVHRILVKETVEDRILALQNNKRKLVEAALDEGQSKNVG 1185


>gi|324500193|gb|ADY40099.1| Helicase mot1 [Ascaris suum]
          Length = 1698

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGR---------------TLDKDPCTIQEWNEG 107
            +   NA   ++     S +  + + F  G+                 ++        N+ 
Sbjct: 1443 VSALNAHRALIFCQRISTVQVIAEFFNSGQLGLDIRYSVLDGTVPVSERHAIAENFNNDP 1502

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I +L    +  G GLNL  G ++++F    W+  +  Q ++R       + G KR V V
Sbjct: 1503 GIDVLLLTTSVGGEGLNLT-GADVVIFVEHDWNPVKDLQAMDR-----AHRIGQKRTVNV 1556

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI + +I++ +++  + K+   + L+ A
Sbjct: 1557 YRLITEASIEQKIMRYQKFKTDTANALVGA 1586


>gi|302841324|ref|XP_002952207.1| hypothetical protein VOLCADRAFT_81789 [Volvox carteri f.
           nagariensis]
 gi|300262472|gb|EFJ46678.1| hypothetical protein VOLCADRAFT_81789 [Volvox carteri f.
           nagariensis]
          Length = 755

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K+  L+ ++++       +++       L  ++                    +    I 
Sbjct: 485 KLALLDRLLKELRKGGHRVLIFSQMTEMLNVIEAYLQDLGIQPLRIDGSVHWQQRRNDIA 544

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+  G     +      + G G+NL    + ++ +   W+  +  Q ++R       + G
Sbjct: 545 EFQSGNSDKWVFLLSTRAGGLGINLT-AADTVIIYDSDWNPHQDAQAMDRC-----HRIG 598

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + V V+ L+  N+++  +L +  +K  ++ +++
Sbjct: 599 QTKPVLVFRLVTSNSVENRMLAKAESKKALERIVI 633


>gi|310791236|gb|EFQ26765.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1012

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLD 95
           +   K +A   ++   +      I+   +   L  LQ A  +                  
Sbjct: 837 LASSKTRACMDLLRKIQETGEKTIIFSQWTMLLDLLQVAIKKEGLGIKHCRYTGEMSMAQ 896

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D        +  + ++     +   GLNL    + ++    +W+     Q ++R     
Sbjct: 897 RDDTAFTFSTDADMKVMMVSLRAGNAGLNL-VSASRVIIMDPFWNPYIEMQAVDR----- 950

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G ++ V V+ ++ Q T+++ ++Q    K    D  L+
Sbjct: 951 AHRIGQQKPVKVHRILTQETVEDRIVQLQEKKRATVDAALD 991


>gi|255731139|ref|XP_002550494.1| chromo domain protein 1 [Candida tropicalis MYA-3404]
 gi|240132451|gb|EER32009.1| chromo domain protein 1 [Candida tropicalis MYA-3404]
          Length = 1423

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL-QKAFPQGRTLDK---------DPC 99
              K+  LE ++ +       +++       L  L    F +G    +            
Sbjct: 669 SSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTIPSSQRKI 728

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N              + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 729 SIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 782

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 783 RIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 821


>gi|21223436|ref|NP_629215.1| bifunctional protein [Streptomyces coelicolor A3(2)]
 gi|13810424|emb|CAC37452.1| putative bifunctional protein [Streptomyces coelicolor A3(2)]
          Length = 800

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 30/197 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A            +  K++ L  I+++A  N    
Sbjct: 547 ELSASDEEAYREAVRAGNFMAMRRAAYMS-------SGNSAKLERLREIVQEAGENGQKT 599

Query: 72  IVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
           +V  +F   LA +++A                 G    +    + ++   + P +L    
Sbjct: 600 VVFSNFKDVLAVVKEALAVETTRVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQI 659

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   +++V            Q + R       + G  R V V+ L+A   +
Sbjct: 660 QAAGVGLNMQ-AASVVVICEPQIKPTIEHQAVAR-----AHRMGQVRPVRVHRLLATGGV 713

Query: 177 DELVLQRLRTKSTIQDL 193
           DE +++ L  K+ + D 
Sbjct: 714 DERMVKMLEAKTRLFDA 730


>gi|115644354|ref|XP_001201170.1| PREDICTED: similar to E1a binding protein P400 [Strongylocentrotus
            purpuratus]
 gi|115956564|ref|XP_001178919.1| PREDICTED: similar to E1a binding protein P400 [Strongylocentrotus
            purpuratus]
          Length = 3330

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQ 102
            K++ ++ ++ K     + +++       L  L++             G T  +     ++
Sbjct: 1996 KLQTMDGLLRKLKTEGSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMME 2055

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I        S G G+NL  G N ++F+   W+     Q  +R       + G 
Sbjct: 2056 RFNKDPRIFCFILSTRSGGMGVNLT-GANAVIFYDSDWNPTMDAQAQDRC-----HRIGQ 2109

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y LI++ +I+E +L++   K  + D+ +  
Sbjct: 2110 TRDVHIYRLISEMSIEENILKKSNQKRLLIDVSIEG 2145


>gi|84998372|ref|XP_953907.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1 )
            [Theileria annulata]
 gi|65304905|emb|CAI73230.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1
            homologue), putative [Theileria annulata]
          Length = 1816

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA--VYYDEEKH-WKEV---H 52
            + Y +  R              + +S    C++L    N     Y  E++  W +     
Sbjct: 1064 RNYEELARN----------SGGSRSSLQNICMELKKVCNHPFLCYEPEDRQVWLQGLIYG 1113

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCT 100
              KI  L+ ++++       +++       L  +      + F   R       +     
Sbjct: 1114 SGKICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKA 1173

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N+ +           + G G+NL    + ++ +   W+ +   Q   R       +
Sbjct: 1174 MDHFNDPQSDDFCFLLSTKAGGLGINLT-SADTVIIYDSDWNPQNDLQAEAR-----AHR 1227

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             G  + V +Y L+ +++I++ +L+R +TK  +  L++  L K  
Sbjct: 1228 IGQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRG 1271


>gi|290994049|ref|XP_002679645.1| predicted protein [Naegleria gruberi]
 gi|284093262|gb|EFC46901.1| predicted protein [Naegleria gruberi]
          Length = 1001

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWNEGKIPLLFAHP 116
               +++       L  LQ  F           G    ++    I+ + +  + +     
Sbjct: 477 EGHKVLIFSQMTQMLDILQDYFSFRKWNYERLDGSVRGEERFEAIKSFTDKDVFVFLLST 536

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++F  +  + +   Q   R       + G  + V VY L+ ++++
Sbjct: 537 RAGGVGLNLT-SADTVIFMDMDMNPQMDLQAQARC-----HRIGQDKPVTVYRLVTESSV 590

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E++L+R   K  +    ++
Sbjct: 591 EEVILKRSMKKIALSINTID 610


>gi|241950892|ref|XP_002418168.1| ATP-dependent helicase, putative; SWI/SNF chromatin remodelling
            complex protein, putative; SWI/SNF complex component,
            putative; transcription regulatory protein, putative
            [Candida dubliniensis CD36]
 gi|223641507|emb|CAX43468.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1663

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYC---DLQGENI--EAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDE- 54
            K Y +  R       D    ++     N+ ++ ++  ++ N   VY + E       D  
Sbjct: 1008 KLYQQMLRYNMLYAGDPSNGSVPVTIKNANNQIMQLKKICNHPFVYEEVEHLINPTIDTN 1067

Query: 55   --------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
                    K + L+ ++ K  A    +++ +          D  R   ++     G T  
Sbjct: 1068 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRDMKYMRLDGGTKA 1127

Query: 96   KDPCTI-QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D   + + +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1128 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1181

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1182 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1228


>gi|218148594|ref|YP_002364362.1| hypothetical protein PP141_gp54 [Pseudomonas phage 14-1]
 gi|218059790|emb|CAU13906.1| hypothetical protein [Pseudomonas phage 14-1]
          Length = 519

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 87/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQE 103
                LE ++E+     II+      ++ +++              G T + +    I +
Sbjct: 360 VFTDLLEGLLEEDQERSIIIWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q        R  + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLT-AADVAIYYTTDEDNELRMQ-----SEDRNHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|169606908|ref|XP_001796874.1| hypothetical protein SNOG_06505 [Phaeosphaeria nodorum SN15]
 gi|160707107|gb|EAT86336.2| hypothetical protein SNOG_06505 [Phaeosphaeria nodorum SN15]
          Length = 1108

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N  +             +QL               G  Y  +
Sbjct: 430 DMQVDWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 489

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++++  A  + +++    +  L  +         Q     G T
Sbjct: 490 EHLVN--NAAKMVMLDRLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGST 547

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+      L      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 548 AHEDRIAAIDDYNKPDSEKFLFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR 606

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+V+  + +  I+E VL+R   K  +  L++   + +
Sbjct: 607 -----AHRIGQTKQVYVFRFVTEGAIEEKVLERAAQKLRLDQLVIQQGRSQ 652


>gi|302695141|ref|XP_003037249.1| hypothetical protein SCHCODRAFT_73063 [Schizophyllum commune H4-8]
 gi|300110946|gb|EFJ02347.1| hypothetical protein SCHCODRAFT_73063 [Schizophyllum commune H4-8]
          Length = 1205

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPA 117
               +V   + + L ++++A                  D+         +    +L     
Sbjct: 1051 TKTVVFSQWTTMLDKIEEALDVAGIRYDRLDGTMKRDDRTRAMDALKYDPGCEVLLVSLK 1110

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + +     +W+     Q ++RI      + G  R V    LI +NTI+
Sbjct: 1111 AGGVGLNLT-AASRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVTTVKLIIENTIE 1164

Query: 178  ELVLQRLRTKSTIQDLLLN 196
              +L+  + K+ + ++ L+
Sbjct: 1165 ARLLEVQKKKTALANMTLD 1183


>gi|145346994|ref|XP_001417965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578193|gb|ABO96258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 609

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ------- 85
           + +GA+          +   K++ L+ ++ +  A  +  ++   +   L  L+       
Sbjct: 412 MLDGALKDKMLDPEIGLQSAKVQRLQELLVELKAKGSRPLIFSQWKIMLDILEWVLHHMG 471

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      +D     +  +N     +        + G GLNL  G + ++     ++
Sbjct: 472 WKYARLDGDTAVDNRQELVDRFNAKDSYLDTFILSTRAGGQGLNLT-GADTVILHDCDFN 530

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  +Q  +R       + G  + V VY L+ + ++DE ++     K  +   +L
Sbjct: 531 PQIDRQAEDRC-----HRLGQTKTVTVYRLVTEGSVDEKIVAIAEQKLNLGSTIL 580


>gi|19075231|ref|NP_587731.1| fun thirty related protein Fft2 [Schizosaccharomyces pombe 972h-]
 gi|74676118|sp|O74842|FFT2_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase fft2; AltName:
            Full=Fun thirty-related protein 2
 gi|3668152|emb|CAA21109.1| fun thirty related protein Fft2 [Schizosaccharomyces pombe]
          Length = 1284

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 21/174 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP--------- 89
            Y  ++  W  +   KI+ L+ ++ K     + I++   F   L  L++            
Sbjct: 913  YTLKDDPW--MDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRL 970

Query: 90   QGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G T  +    I +    E  + +      + G G+NL    N+++ +   ++  +  Q 
Sbjct: 971  DGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINL-ACANVVILYDCSYNPFDDLQA 1029

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +R       + G  R V V  LI  NTI+E + +   TK  +   L +  K  
Sbjct: 1030 EDR-----AHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDR 1078


>gi|116181940|ref|XP_001220819.1| hypothetical protein CHGG_01598 [Chaetomium globosum CBS 148.51]
 gi|88185895|gb|EAQ93363.1| hypothetical protein CHGG_01598 [Chaetomium globosum CBS 148.51]
          Length = 843

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 22/209 (10%)

Query: 1   MKQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           MK+  + + ++   D     ++A +     + C        Y   +  W      K+KAL
Sbjct: 611 MKRVSQAELKQPKLDHLTNELKALSDFELHLWCRDYKCIKGYDLPDDSW--TDCAKVKAL 668

Query: 60  EVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGRT-LDKDPCTIQEWNEG 107
             ++   +AN    +V   F   +           ++    QG T +      I E+N  
Sbjct: 669 LELVRKYQANGDRALVFTRFAKVIEILGECLASEGIEYLSLQGNTDVSARQELINEFNAD 728

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           + IP+      S G G+NL    N ++ F    + ++  Q        R  + G  R V 
Sbjct: 729 ESIPVFLLTTGSGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRAHRLGQTRPVE 782

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +  LI++ T++ELV +    K  + + ++
Sbjct: 783 IIRLISEGTVEELVYKACEKKLELANKVV 811


>gi|68467034|ref|XP_722432.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
 gi|46444408|gb|EAL03683.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
          Length = 1690

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANG-AVYYDEEKHW---KEVH 52
            K Y +  R               +   N+ ++ ++  ++ N   VY + E       E +
Sbjct: 1035 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1094

Query: 53   DE------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
            D+      K + L+ ++ K  A    +++ +          D  R   ++     G T  
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1154

Query: 96   KDPCTI-QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D   + + +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1155 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255


>gi|326431158|gb|EGD76728.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 1797

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK--IPLL 112
            +A     ++   F S L  L+  F                D     ++ +N       + 
Sbjct: 1132 RAGRHRTLIFSQFTSLLTVLEDYFAAKGIKYLRMDGSTSADDRAELLRLFNAPDSEYEIF 1191

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNLQ   + ++ +   W+  +  Q        R  + G  R V V+ L+ 
Sbjct: 1192 ILSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIGQTREVRVFRLVT 1245

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALK 199
             N+++E +L+R + K  +   ++ A K
Sbjct: 1246 VNSVEERILERAKYKLDVDQKVIQAGK 1272


>gi|323337858|gb|EGA79098.1| Chd1p [Saccharomyces cerevisiae Vin13]
          Length = 1329

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 693 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 752

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 753 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 806

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 807 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|242058897|ref|XP_002458594.1| hypothetical protein SORBIDRAFT_03g036380 [Sorghum bicolor]
 gi|241930569|gb|EES03714.1| hypothetical protein SORBIDRAFT_03g036380 [Sorghum bicolor]
          Length = 1255

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 44   EEKHWKEVHDEKIKA--LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKD 97
            + K    +  EK         I+       IV   +   L      L+ +    R LD  
Sbjct: 1074 DSKCSIGLESEKFDGRGTSEQIDTKLTEKAIVFSQWTRMLDLLEVHLKASHVTYRRLDGT 1133

Query: 98   ------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     ++++N   ++ ++     +   GLN+    ++L+   LWW+     Q ++R
Sbjct: 1134 MSVAARDKAVKDFNTVPEVTVMIMSLKAASLGLNMVAACHVLML-DLWWNPTTEDQAVDR 1192

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  R V V  L  ++T+++ +L     K  +
Sbjct: 1193 -----AHRIGQTRPVTVSRLTIKDTVEDRILALQEKKREM 1227


>gi|312066349|ref|XP_003136228.1| SNF2 family domain-containing protein [Loa loa]
 gi|307768614|gb|EFO27848.1| SNF2 family domain-containing protein [Loa loa]
          Length = 1965

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L  ++          ++       L  LQ                  +++     +
Sbjct: 1339 KLQVLNSLLRDLFLYKHRCLIFTQMARVLDILQAFLSFHGYQYFRLDGTTGIEQRQAMTE 1398

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + KI        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1399 RFNADPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1452

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y L+++ TI+E +L++   K  + ++ ++
Sbjct: 1453 TRNVTIYRLVSERTIEENILRKAMQKRRLGEMAID 1487


>gi|241948531|ref|XP_002416988.1| ATP-dependent chromodomain helicase, putative; chromodomain protein
           1, putative [Candida dubliniensis CD36]
 gi|223640326|emb|CAX44576.1| ATP-dependent chromodomain helicase, putative [Candida dubliniensis
           CD36]
          Length = 1406

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDK 96
             +   K+  LE ++ +       +++       L  L           +         K
Sbjct: 665 IVMSSGKMVLLEQLLSRLKKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSK 724

Query: 97  DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N    K         + G G+NL    + ++ F   W+ +   Q + R    
Sbjct: 725 RKIAIDHFNALGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR---- 779

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 780 -AHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 820


>gi|224085664|ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222857105|gb|EEE94652.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1206

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K+K +  +++  +     +++       L   +          +       +      
Sbjct: 738 SGKMKVVAQVLKVWQEQGHRVLLFTQTQQMLDIFENFLNSGGYNYRRMDGSTPIKLRMSI 797

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+N  G I +        G G NL  G N ++ F   W+     Q  ER       + 
Sbjct: 798 IDEFNNSGDIFIFILTTKVGGLGTNLT-GANRVIIFDPDWNPSTDMQARERAW-----RI 851

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G K+ V VY LI   TI+E V  R   K  + + +L
Sbjct: 852 GQKKDVTVYRLITGGTIEEKVYHRQIYKHFLTNKIL 887


>gi|145482121|ref|XP_001427083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394162|emb|CAK59685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 761

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK 96
            ++    K   L++++++       +++  ++   L +++    Q         G+ + K
Sbjct: 450 VQDYQSVKFNCLKILVDQCKEQNEKVVINSYYRQTLDQIEHNLIQWNLKFLRLDGKVVQK 509

Query: 97  DP-CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + E+N+ K I +   +  S G GLNL  G N ++   + W+     Q++ RI   
Sbjct: 510 QRLTLVDEFNKDKDITVFLLNGKSGGTGLNL-VGANKMICVEVDWNPANDSQVMGRIW-- 566

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++ V +Y LI   T +E ++QR  TK  +   +++
Sbjct: 567 ---RDGQQKQVHIYRLITCGTYEEKIMQRQLTKENLSQNIVD 605


>gi|72391474|ref|XP_846031.1| DNA excision repair protein [Trypanosoma brucei TREU927]
 gi|62176576|gb|AAX70681.1| DNA excision repair protein, putative [Trypanosoma brucei]
 gi|70802567|gb|AAZ12472.1| DNA excision repair protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 1126

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
             +        K++ L  +++  +      +V     + L  ++    Q           
Sbjct: 788 SNRPVNYEGSSKLQTLRQLLKLWQRGGQRALVFSQTRAMLDIIENMCEQESLTYIRMDGT 847

Query: 96  ----KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +    +  +NE   I +        G G+NL  G + +V F   W+    +Q  ER
Sbjct: 848 TNSLRRQELMDRFNEDDRIVVALLTTRVGGVGVNL-IGADRVVIFDPDWNPVTDEQARER 906

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G  R V VY LI+  T++E VL+R   K+ + + +L
Sbjct: 907 AW-----RIGQTRDVGVYRLISSGTVEEAVLRRQLAKTYVTEKVL 946


>gi|148230804|ref|NP_001085120.1| RAD54 homolog B [Xenopus laevis]
 gi|47939775|gb|AAH72215.1| MGC81308 protein [Xenopus laevis]
          Length = 895

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KI 109
           I E + +  +++  H+   L  LQ                  + +    +  +N      
Sbjct: 634 IRELSPSERVVLVSHYTQTLNILQALCVQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSSD 693

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL  G + L+ + + W+     Q + R+      + G +R V +Y 
Sbjct: 694 FIFLLSSKAGGVGLNL-IGASHLILYDIDWNPANDIQAMARVW-----RDGQRRTVHIYR 747

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           L+   +++E + QR  +K  +   +++  KK
Sbjct: 748 LLTTGSLEEKIYQRQISKQGLSGAVVDLTKK 778


>gi|11035016|gb|AAG01537.2|AF292095_1 imitation switch ISWI [Xenopus laevis]
          Length = 1046

 Score = 95.0 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NS+ KT K       +QL       Y  +     
Sbjct: 403 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 462

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + I++       L  L+             
Sbjct: 463 PPYTTDLHLATNSGKMMVLDKLLPKLKEQDSRILIFSQMTRVLDILEDYCMWRNYEYCRL 522

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 523 DGQTPHEERQESIIAYNAPGSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 581

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 582 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 626


>gi|256544992|ref|ZP_05472360.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
 gi|256399288|gb|EEU12897.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
          Length = 78

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 11 LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
          +   ++ ++I+A NSA+ + K LQ+A+G+VY DE+K+   +HD KI ALE +IE AN  P
Sbjct: 1  MVVSIKEKDIDAVNSAALSNKLLQMASGSVY-DEDKNMIRIHDRKIDALENLIEGANGKP 59

Query: 71 IIVAYHFNSDLARLQ 85
          + +AY + SDL R++
Sbjct: 60 VPIAYWYKSDLKRIK 74


>gi|149408367|ref|YP_001294470.1| hypothetical protein ORF053 [Pseudomonas phage F8]
 gi|219523924|ref|YP_002455985.1| helicase [Pseudomonas phage PB1]
 gi|190333520|gb|ACE73775.1| helicase [Pseudomonas phage PB1]
          Length = 519

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  L+ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KIYQRVEEDYHFVLKNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQE 103
                LE ++E+     II+      ++ ++               G T + +    I +
Sbjct: 360 VFTDLLEGLLEEDPERSIIIWAMRIHEIGQIAAYLEAQGISFGAYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q        R  + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLT-AADVAIYYTTDEDNELRMQ-----SEDRNHRIGTIN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|325117475|emb|CBZ53027.1| hypothetical protein NCLIV_028160 [Neospora caninum Liverpool]
          Length = 2544

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNL 125
               +++         RL     +    +     ++ +N              + G G+NL
Sbjct: 1321 GHRVLIFSQ-----MRLDGTMAK----EVRRKAMEHFNAKNSEDFCFLLSTKAGGLGINL 1371

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                + ++ F   W+ +   Q   R       + G  R V +Y L+ +++I++ +L+R +
Sbjct: 1372 T-SADTVIIFDSDWNPQNDLQAEAR-----AHRIGQTRTVQIYRLVTKDSIEQTILERAK 1425

Query: 186  TKSTIQDLLLNALKKETI 203
             K  +  L++  L + ++
Sbjct: 1426 AKMVLDTLVVQGLNQRSL 1443


>gi|261329556|emb|CBH12538.1| DNA excision repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1126

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
             +        K++ L  +++  +      +V     + L  ++    Q           
Sbjct: 788 SNRPVNYEGSSKLQTLRQLLKLWQRGGQRALVFSQTRAMLDIIENMCEQESLTYIRMDGT 847

Query: 96  ----KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +    +  +NE   I +        G G+NL  G + +V F   W+    +Q  ER
Sbjct: 848 TNSLRRQELMDRFNEDDRIVVALLTTRVGGVGVNL-IGADRVVIFDPDWNPVTDEQARER 906

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G  R V VY LI+  T++E VL+R   K+ + + +L
Sbjct: 907 AW-----RIGQTRDVGVYRLISSGTVEEAVLRRQLAKTYVTEKVL 946


>gi|222619356|gb|EEE55488.1| hypothetical protein OsJ_03673 [Oryza sativa Japonica Group]
          Length = 1270

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTIQEWN-EGKIPLLFAHPA 117
               IV   +   L      L+ +    R LD           ++++N   ++ ++     
Sbjct: 1116 EKAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLK 1175

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+    ++L+   LWW+     Q ++R       + G  R V V  L  ++T++
Sbjct: 1176 AASLGLNMVAACHVLLL-DLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRLTIKDTVE 1229

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1230 DRILALQEKKREM 1242


>gi|218189165|gb|EEC71592.1| hypothetical protein OsI_03975 [Oryza sativa Indica Group]
          Length = 1270

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTIQEWN-EGKIPLLFAHPA 117
               IV   +   L      L+ +    R LD           ++++N   ++ ++     
Sbjct: 1116 EKAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLK 1175

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+    ++L+   LWW+     Q ++R       + G  R V V  L  ++T++
Sbjct: 1176 AASLGLNMVAACHVLLL-DLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRLTIKDTVE 1229

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1230 DRILALQEKKREM 1242


>gi|115440307|ref|NP_001044433.1| Os01g0779400 [Oryza sativa Japonica Group]
 gi|53792212|dbj|BAD52845.1| putative ATPase [Oryza sativa Japonica Group]
 gi|113533964|dbj|BAF06347.1| Os01g0779400 [Oryza sativa Japonica Group]
 gi|215701396|dbj|BAG92820.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1213

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTIQEWN-EGKIPLLFAHPA 117
               IV   +   L      L+ +    R LD           ++++N   ++ ++     
Sbjct: 1059 EKAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLK 1118

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+    ++L+   LWW+     Q ++R       + G  R V V  L  ++T++
Sbjct: 1119 AASLGLNMVAACHVLLL-DLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRLTIKDTVE 1172

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1173 DRILALQEKKREM 1185


>gi|53792213|dbj|BAD52846.1| putative ATPase [Oryza sativa Japonica Group]
          Length = 1228

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTIQEWN-EGKIPLLFAHPA 117
               IV   +   L      L+ +    R LD           ++++N   ++ ++     
Sbjct: 1074 EKAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLK 1133

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+    ++L+   LWW+     Q ++R       + G  R V V  L  ++T++
Sbjct: 1134 AASLGLNMVAACHVLLL-DLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRLTIKDTVE 1187

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1188 DRILALQEKKREM 1200


>gi|198435106|ref|XP_002121833.1| PREDICTED: similar to Helicase domino [Ciona intestinalis]
          Length = 2659

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
             E    E    K++ L V++ +       I++       L  L+                
Sbjct: 1395 PEVRLIEYDCGKLQVLNVLLRRFWVEKHRILIFTQMTRVLDILEAFLSYHGYRYLRLDGS 1454

Query: 92   RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++    ++ +N   +I        S G G+NL  G + +VF+   W+     Q  +R
Sbjct: 1455 TPIEQRMARMERFNNDPRIFCFILSTRSGGIGVNLT-GADTVVFYDSDWNPTMDAQAQDR 1513

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G  R V +Y LI++ T++E +L++   K  + ++ +  
Sbjct: 1514 C-----HRIGQTRDVHIYRLISERTVEENILKKANQKRLLGEMAIEG 1555


>gi|39978121|ref|XP_370448.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
 gi|145013481|gb|EDJ98122.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K + L+ +++  + N   ++V  H    L  L+  F               +++    + 
Sbjct: 572 KWRVLKDLLKFWEGNGDKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIEERQQIVD 631

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N + +  +      + G GLN+    N +V F   W+     Q        R  + G 
Sbjct: 632 DFNSDPQQFVFLISTKAGGVGLNIT-SANKVVIFDPHWNPSWDLQA-----QDRAYRIGQ 685

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R V V+ L++Q TI+E+V  R   K    +
Sbjct: 686 TRDVDVFRLVSQGTIEEIVYARQIYKQQQAN 716


>gi|145493367|ref|XP_001432679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399793|emb|CAK65282.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1021

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQEW 104
           +  K+K L++ ++K       +I+   F S L  L+     + +   R     P  +++ 
Sbjct: 430 NSGKLKVLDMFLKKLYNENHKVILFSQFTSLLDILEDYLNYRKYKYCRLDGSTPIEVRDE 489

Query: 105 N-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           N       +  + +      + G G+ L    + ++ +   ++ +  QQ ++R       
Sbjct: 490 NIRNFQNPDSDLFIFLLSTRAGGLGITLT-AADTVIIYDSDFNPQLDQQAMDR-----AH 543

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + G K+ V VY LI Q+T++E +++R + K   + ++++    + + +
Sbjct: 544 RIGQKKNVMVYRLICQSTVEEKIIERQQIKLRWEQMIIDKGHSQMVGM 591


>gi|50289211|ref|XP_447036.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526345|emb|CAG59969.1| unnamed protein product [Candida glabrata]
          Length = 1904

 Score = 94.6 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G    +D    ++++NE   I  L       G GLNL  G + ++F
Sbjct: 1707 FKRYMPSVSYMRLDGSVDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIF 1765

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+     Q ++R       + G K+ V VY ++ + T++E ++   + K  I   +
Sbjct: 1766 VEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRIVTKGTLEEKIMGLQKFKMNIASTV 1820

Query: 195  LN 196
            +N
Sbjct: 1821 VN 1822


>gi|322824424|gb|EFZ29833.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 748

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 53  DEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKDP 98
             K++ +   I+          +I+  HF S +  +  A  +            TL    
Sbjct: 553 STKLRMILDSIDTMKKEYPDDKMIIFSHFTSFMDVISVALDKLEISHLRLDGTMTLTNRN 612

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +     + ++ A   + G GLNL    ++LV    WW+    +Q + R       
Sbjct: 613 TVIRRFQASDDVRVILASKTATGVGLNLTAANHVLV-VDPWWNPAIEEQAVHRC-----Y 666

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G K+ V V  +I ++TI++   +  + K    D +L A  K
Sbjct: 667 RIGQKKHVHVTRIIIEDTIEQYCHEICQRKKEFGDAILRAATK 709


>gi|148228303|ref|NP_001083868.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus laevis]
 gi|49899007|gb|AAH76715.1| ISWI protein [Xenopus laevis]
          Length = 1046

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NS+ KT K       +QL       Y  +     
Sbjct: 403 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 462

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 463 PPYTTDLHLATNSGKMMVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 522

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  ++   +I  +N       +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 523 DGQTPHEERQESIIAYNAPGSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 581

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 582 AMDR-----AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 626


>gi|71653924|ref|XP_815591.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70880657|gb|EAN93740.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 748

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 53  DEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKDP 98
             K++ +   I+          +I+  HF S +  +  A  +            TL    
Sbjct: 553 STKLRMILDSIDTMKKEYPDDKMIIFSHFTSFMDVISVALDKLEISHLRLDGTMTLTNRN 612

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +     + ++ A   + G GLNL    ++LV    WW+    +Q + R       
Sbjct: 613 TVIRRFQASDDVRVILASKTATGVGLNLTAANHVLV-VDPWWNPAIEEQAVHRC-----Y 666

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G K+ V V  +I ++TI++   +  + K    D +L A  K
Sbjct: 667 RIGQKKHVHVTRIIIEDTIEQYCHEICQRKKEFGDAILRAATK 709


>gi|298715287|emb|CBJ27936.1| Chromodomain-helicase-DNA-binding protein 8 [Ectocarpus siliculosus]
          Length = 3661

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWN-EGKIPLLF 113
            ++    +++   F   L  +Q+             GRT  ++   +I  +N +    +  
Sbjct: 2340 RSEGHKVLIFSQFIGMLDMVQEFLSLRGHKHERLDGRTTGNERQKSIDRFNRDPNSFVFL 2399

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    +  + +   W+ +   Q + R       + G  ++V VY LI +
Sbjct: 2400 LSTRAGGVGINLT-AADTCIIYDSDWNPQNDVQAMARC-----HRIGQTKSVMVYRLITR 2453

Query: 174  NTIDELVLQRLRTKSTIQDLLL 195
            +  +  +  R   K  ++  +L
Sbjct: 2454 DCFESEMFNRASMKLGLEQAVL 2475


>gi|241157063|ref|XP_002407938.1| helicase, putative [Ixodes scapularis]
 gi|215494252|gb|EEC03893.1| helicase, putative [Ixodes scapularis]
          Length = 546

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-PI 71
             L     +  +   K  +C ++             +     K+  L  ++E+       
Sbjct: 350 LSLNKTADQGLDVLDKYSRCSEME------------RSFASCKLATLLQLLEEVPPKDKS 397

Query: 72  IVAYHFNSDLARLQKAF---------PQGRTLD-KDPCTIQEWNEG--KIPLLFAHPASC 119
           +V   + S LA +++            QG     +    +  +N       +L     + 
Sbjct: 398 VVLSKWTSLLALVEEHLGRRAIPCATIQGSVPGQRRAEIVHSFNRDPRGPKVLLLSLEAG 457

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N +    + W+     Q  +RI      + G  + V +  LI   T++E 
Sbjct: 458 GVGLNL-IGANHMFALDVHWNPAMEAQAFDRI-----HRVGQTKPVVINRLICAGTVEER 511

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           +L+    K  + D ++   +
Sbjct: 512 ILELQAQKQRLADSVVAGRR 531


>gi|154316737|ref|XP_001557689.1| hypothetical protein BC1G_03786 [Botryotinia fuckeliana B05.10]
 gi|150845398|gb|EDN20591.1| hypothetical protein BC1G_03786 [Botryotinia fuckeliana B05.10]
          Length = 1130

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQVKWYKKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++ +     + +++    +  L  L+               G 
Sbjct: 483 EHLV--FNAGKMVMLDKLLTRMKKAGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGT 540

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I ++N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 541 AHEDRIQAIDDYNKPDSEKFVFLLTTRAGGLGINLT-SADIVVLYDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  + +N I+E VL+R   K  +  L++ 
Sbjct: 600 -----AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVIQ 640


>gi|299746164|ref|XP_002911013.1| hypothetical protein CC1G_15553 [Coprinopsis cinerea okayama7#130]
 gi|298406931|gb|EFI27519.1| hypothetical protein CC1G_15553 [Coprinopsis cinerea okayama7#130]
          Length = 828

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQ----- 85
           C+ LA  A   + E+         +K L  I   +N     I+   F S L  +Q     
Sbjct: 627 CVDLAKQARQAELERPTSAKIRMVLKLLAKIDRDSNGEEKTIIFSQFTSMLDLIQPFLEE 686

Query: 86  KAFPQGR------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           K     R        D++    +  N     ++     +   GLNL    N ++   LWW
Sbjct: 687 KGIKYTRYDGSMAPKDREAALEKIRNSKSTRVILISFKAGSTGLNLT-ACNNVILVDLWW 745

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           +     Q  +R       + G KR V++Y L    T+++ +L     K 
Sbjct: 746 NPALEDQAFDR-----AHRYGQKRDVYIYKLKVDATVEDRILALQDKKR 789


>gi|256083470|ref|XP_002577966.1| helicase [Schistosoma mansoni]
 gi|238663311|emb|CAZ34204.1| helicase mot1, putative [Schistosoma mansoni]
          Length = 2340

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 19/142 (13%)

Query: 69   APIIVAYHFNSDLAR----LQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAH 115
               ++ +     L      L+K FP              ++    ++   +  I L+   
Sbjct: 2144 HRALIFFQTREMLQLTGEMLKKQFPWITATRLDGTVPVNERHNRVVKFNQDPSIDLMLLT 2203

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             A  G GLNL  G + ++F    W+  +  Q ++R       + G +R V VY LI +++
Sbjct: 2204 TAVGGLGLNLT-GADTVIFVEHDWNPSKDLQAMDR-----AHRIGQRRTVNVYRLITEDS 2257

Query: 176  IDELVLQRLRTKSTIQDLLLNA 197
            I+E ++     K  + + +L A
Sbjct: 2258 IEEQIMNLQAFKLHLANTVLTA 2279


>gi|157134957|ref|XP_001663375.1| hypothetical protein AaeL_AAEL013189 [Aedes aegypti]
 gi|108870352|gb|EAT34577.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1904

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVII--------EKA--NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK 96
            H  K+ AL+ ++        E    N    ++     + L  +     +K  P    L  
Sbjct: 1649 HSAKLPALKQLLLDCGIGTNEDMSVNQHRALIFCQLKAMLDIIENDLLKKHLPAVSYLRL 1708

Query: 97   DP--------CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            D           + ++N +  I +L       G GLNL  G + ++F    W+  +  Q 
Sbjct: 1709 DGSVPPSSRHQIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQA 1767

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G K+ V VY LI + +++E ++   + K    + +++
Sbjct: 1768 MDR-----AHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLLTANTVVS 1811


>gi|70995832|ref|XP_752671.1| SNF2 family helicase/ATPase PasG [Aspergillus fumigatus Af293]
 gi|42820703|emb|CAF32016.1| possible swi2/snf2-like protein [Aspergillus fumigatus]
 gi|66850306|gb|EAL90633.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus fumigatus
           Af293]
 gi|159131425|gb|EDP56538.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus fumigatus
           A1163]
          Length = 867

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT-IQEWN-EGKIPLLFA 114
               I++   F + L  LQ               G     D    I+ +N +    +   
Sbjct: 640 KGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKAFNSDPGYKIFLL 699

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ ++  Q        R  + G  + V VY L  + 
Sbjct: 700 STRAGGQGINL-VAADTVILYDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATKG 753

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T+++ +L++  +K  ++ L++   K  ++
Sbjct: 754 TVEQTLLEKADSKRRLERLVIQKGKFRSL 782


>gi|312213639|emb|CBX93641.1| similar to ISWI chromatin-remodeling complex ATPase ISW2
           [Leptosphaeria maculans]
          Length = 1310

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 26/168 (15%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLAR-------LQKAFPQGRTLD------- 95
             K   LE +++         +++   F   L         +     + R L        
Sbjct: 696 SGKFILLEKLLKHTVFEQGKKVLIFSGFTRTLDYCEDLLSLISNRGEKFRHLRLDGSSAR 755

Query: 96  -KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    I+ +N+      ++     + G G+NL    + ++F    W+ +   Q   R  
Sbjct: 756 ARRNLDIRLFNQEGSDYKVMLLSTRAGGLGINLTSAQD-VIFLDEDWNPQITLQAEAR-- 812

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                + G  + V +Y L  Q T++E ++ R+R K  +   +  +++ 
Sbjct: 813 ---AHRIGQTKPVTIYKLCTQGTVEEQMMGRIRKKLYLSAKITESMQS 857


>gi|84998236|ref|XP_953839.1| SWI/SNF family trascriptional activator protein [Theileria
           annulata]
 gi|65304836|emb|CAI73161.1| SWI/SNF family trascriptional activator protein, putative
           [Theileria annulata]
          Length = 1012

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 83/221 (37%), Gaps = 32/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKC-LQL--ANGAVY---------YDEEKHWK 49
           + Y    R+   +L  ++        + +   +QL  A    Y          D      
Sbjct: 429 QLYRDLLRKNVPELGVDDNTKSGIHVQLLNLAMQLRKACNHPYLFEGYEDRNEDPFGEHV 488

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
             +  K+  ++ +I +   N++ I++       L  L+              G T  +D 
Sbjct: 489 VQNSGKLSLVDKLIPRLLGNSSRILIFSQMARMLDILEDYCRMRNYLYFRIDGNTSSEDR 548

Query: 99  C-TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N+    + +      + G G+NL    ++++ +   W+ +   Q I+R     
Sbjct: 549 DYQISSFNQPDSMVNIFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAIDR----- 602

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V+VY L+ Q TI+E +++R   K  +   ++ 
Sbjct: 603 AHRIGQLKPVYVYRLVHQYTIEEKIIERATMKLQLDTAVIQ 643


>gi|19114572|ref|NP_593660.1| ATP-dependent DNA helicase Hrp1 [Schizosaccharomyces pombe 972h-]
 gi|15214054|sp|Q9US25|HRP1_SCHPO RecName: Full=Chromodomain helicase hrp1; AltName:
           Full=ATP-dependent helicase hrp1
 gi|6714825|emb|CAB66168.1| ATP-dependent DNA helicase Hrp1 [Schizosaccharomyces pombe]
          Length = 1373

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQE- 103
           +  K+  L+ ++++   +   +++       L  L      + +   R     P +++  
Sbjct: 702 NSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRV 761

Query: 104 ----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +N    P  +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 762 SIDHFNAPDSPDFVFLLSTRAGGLGINLNT-ADTVIIFDSDWNPQADLQAMAR-----AH 815

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 816 RIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIIS 854


>gi|71028038|ref|XP_763662.1| ATP-dependant helicase [Theileria parva strain Muguga]
 gi|68350616|gb|EAN31379.1| ATP-dependant helicase, putative [Theileria parva]
          Length = 969

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 44  EEKHWKE-VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---- 96
             K W E V   K+     IIE  K     I++     + L  + +   +    D+    
Sbjct: 636 PSKRWTESVGSSKLNVSLKIIEMWKKENKKILLFTQTITMLNIIYEHLLETYEKDEILVL 695

Query: 97  --------DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       I+++ N+ K+ L+       G GLNL     I++ +   W+     Q 
Sbjct: 696 YGKHTVKNRNKIIEQFSNDDKVFLMILTTKVGGIGLNLTAATRIII-YDPDWNPMTDMQA 754

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ER       + G K  V +Y LI  +TI+E + QR   K  +   +L+
Sbjct: 755 KERC-----YRIGQKNEVIIYRLITASTIEEKIYQRQLYKYYLSQQILS 798


>gi|1597721|emb|CAA67494.1| putative helicase [Schizosaccharomyces pombe]
          Length = 1367

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQE- 103
           +  K+  L+ ++++   +   +++       L  L      + +   R     P +++  
Sbjct: 696 NSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRV 755

Query: 104 ----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +N    P  +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 756 SIDHFNAPDSPDFVFLLSTRAGGLGINLNT-ADTVIIFDSDWNPQADLQAMAR-----AH 809

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 810 RIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIIS 848


>gi|332025493|gb|EGI65656.1| DNA excision repair protein ERCC-6 [Acromyrmex echinatior]
          Length = 1020

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 67  NAAPIIVA---YHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWNEGK-IPLLFAH 115
               +++          L  L +              + +   TIQ++N      +    
Sbjct: 592 QGHRVLLFTQGRQMMHILESLLQREKYIYLRMDGTTAMSQRQQTIQKFNNDSSYFVFLLT 651

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+     Q  ER       + G  + V VY LI   T
Sbjct: 652 TRVGGLGINLT-GANRVVIYDPDWNPATDAQARERAW-----RIGQNKQVTVYRLITAGT 705

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I+E +  R   K  + + +L+  ++  +
Sbjct: 706 IEEKIYHRQIFKLLLSNKVLDEPRQRQL 733


>gi|258570209|ref|XP_002543908.1| CHD1 protein [Uncinocarpus reesii 1704]
 gi|237904178|gb|EEP78579.1| CHD1 protein [Uncinocarpus reesii 1704]
          Length = 1358

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 33/176 (18%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPIIVAYHFNSDLAR 83
            ++ + E+   +    +  AL  +I  +               +   +++       L  
Sbjct: 742 FMFANAEERILQGSTRREDALRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDI 801

Query: 84  LQKAFPQG----RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           L           + LD          +I+ +N              + G G+NL    + 
Sbjct: 802 LADYMEARNFAYQRLDGTIAAGPRRLSIEHFNSPDSTDFAFLLSTRAGGLGINLMT-ADT 860

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++ F   W+ +   Q + R       + G  + V VY L++++T++E V++R R K
Sbjct: 861 VILFDSDWNPQADLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVIERARNK 911


>gi|225446400|ref|XP_002274640.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|302143309|emb|CBI21870.3| unnamed protein product [Vitis vinifera]
          Length = 874

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEK--ANAAP 70
           D   +  +A  +++     + L  G    +         H  K++ALE ++    ++   
Sbjct: 477 DPDKQRKDAEFASAVFGTDIDLVGGNTQSESFMGLSDVKHCGKMRALEKLMLSWVSHGDK 536

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           I++  +    L  L+K                  +     + ++N      +      + 
Sbjct: 537 ILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAG 596

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    N +V F   W+  +  Q        R  + G KR V V+ L+A  +++EL
Sbjct: 597 GLGLNL-VSANRVVIFDPNWNPAQDLQA-----QDRSFRYGQKRHVVVFRLLAAGSLEEL 650

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V  R   K  + ++ ++ 
Sbjct: 651 VYSRQVYKQQLSNIAISG 668


>gi|242791140|ref|XP_002481699.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|242791145|ref|XP_002481700.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718287|gb|EED17707.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718288|gb|EED17708.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1118

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 86/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 423 DMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ I+ +     + +++    +  L  L         +     G T
Sbjct: 483 EHLI--DNSGKMVVLDKILNRMKKQGSRVLIFSQMSRVLDILEDYCVFREHKYCRIDGST 540

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N       +      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 541 AHEDRIAAIDEYNREGSDKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G K+ V V+  + ++ I+E VL+R   K  +  L++   + +
Sbjct: 600 -----AHRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVIQQGRTQ 645


>gi|147857221|emb|CAN79218.1| hypothetical protein VITISV_012795 [Vitis vinifera]
          Length = 874

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEK--ANAAP 70
           D   +  +A  +++     + L  G    +         H  K++ALE ++    ++   
Sbjct: 477 DPDKQRKDAEFASAVFGTDIDLVGGNTQSESFMGLSDVKHCGKMRALEKLMLSWVSHGDK 536

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           I++  +    L  L+K                  +     + ++N      +      + 
Sbjct: 537 ILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAG 596

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    N +V F   W+  +  Q        R  + G KR V V+ L+A  +++EL
Sbjct: 597 GLGLNL-VSANRVVIFDPNWNPAQDLQA-----QDRSFRYGQKRHVVVFRLLAAGSLEEL 650

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V  R   K  + ++ ++ 
Sbjct: 651 VYSRQVYKQQLSNIAISG 668


>gi|154420998|ref|XP_001583513.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121917755|gb|EAY22527.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1468

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L++                  D    +I ++N+    I +   
Sbjct: 638 KGDKVLIFSQMVHVLDILEEYLHYRNYPYVRLDGSVVGDVRQESIDKFNDPEKDIFVFLL 697

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    N+++ +   W+ +   Q   R       + G    V VY LI + 
Sbjct: 698 CTRAGGVGLNLTAATNVII-YDSDWNPQNDLQAQARC-----HRIGQTHDVKVYRLITRG 751

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T +  +  R   K  +   +L++
Sbjct: 752 TYESDMFTRASMKLGLDQAILDS 774


>gi|19577362|emb|CAD28443.1| possible swi2/snf2-like protein [Aspergillus fumigatus]
          Length = 858

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT-IQEWN-EGKIPLLFA 114
               I++   F + L  LQ               G     D    I+ +N +    +   
Sbjct: 631 KGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKAFNSDPGYKIFLL 690

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ ++  Q        R  + G  + V VY L  + 
Sbjct: 691 STRAGGQGINL-VAADTVILYDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATKG 744

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T+++ +L++  +K  ++ L++   K  ++
Sbjct: 745 TVEQTLLEKADSKRRLERLVIQKGKFRSL 773


>gi|186492175|ref|NP_001117525.1| EDA16 (embryo sac development arrest 16); ATP binding / DNA binding /
            helicase/ nucleic acid binding / protein binding / zinc
            ion binding [Arabidopsis thaliana]
 gi|332195667|gb|AEE33788.1| SNF2, helicase and zinc finger domain-containing protein [Arabidopsis
            thaliana]
          Length = 1122

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKA----FPQGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+ +      Q R LD           +Q++N   ++ ++    
Sbjct: 965  GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1024

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1025 KAASLGLNMVAACHVLML-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVVRFTVKDTV 1078

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1079 EDRILALQQKKRMM 1092


>gi|186492170|ref|NP_176309.2| EDA16 (embryo sac development arrest 16); ATP binding / DNA binding /
            helicase/ nucleic acid binding / protein binding / zinc
            ion binding [Arabidopsis thaliana]
 gi|332195665|gb|AEE33786.1| SNF2, helicase and zinc finger domain-containing protein [Arabidopsis
            thaliana]
          Length = 1280

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKA----FPQGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+ +      Q R LD           +Q++N   ++ ++    
Sbjct: 1123 GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1182

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1183 KAASLGLNMVAACHVLML-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVVRFTVKDTV 1236

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1237 EDRILALQQKKRMM 1250


>gi|315040818|ref|XP_003169786.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
 gi|311345748|gb|EFR04951.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
          Length = 1050

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  I+++ +     IV   F S L +++     G           R   ++  
Sbjct: 808 TSAKIRHLMRILKRESGQSKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 867

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 868 LNRLRNSSSTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 921

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 922 NQTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 959


>gi|169612371|ref|XP_001799603.1| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
 gi|160702496|gb|EAT83500.2| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
          Length = 1333

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 35/219 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DE 54
            + ++++  DL  ++ +A +S+       +L N    +++ +                  
Sbjct: 774 RRLKKDVEKDLPDKDPKAASSS-----LRKLCNHPFVFEQVEEVMNPTKSTNDLLWRASG 828

Query: 55  KIKALEVIIE--KANAAPIIVAYH------FNSDLARLQK----AFPQGRTLDKDPCTIQ 102
           K + L+ I+   +     +++ +          D  RL+             D     ++
Sbjct: 829 KFELLDRILPKFEKTGHRVLMFFQMTQIMNIMEDYLRLRGMKYMRLDGATKADDRSELLK 888

Query: 103 EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N    P         + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 889 EFNAPNSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIG 942

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 943 QKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 981


>gi|326437899|gb|EGD83469.1| hypothetical protein PTSG_04077 [Salpingoeca sp. ATCC 50818]
          Length = 1562

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 22/161 (13%)

Query: 53   DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKD 97
              KI+AL   I+       +   IV   + S L  +Q+A   G              ++ 
Sbjct: 1377 STKIRALLSEIKAMRQEDESNKCIVFSQWTSMLDLIQRAVESGGYTTARLDGSMSQQERS 1436

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   ++    +      S G GLNL    ++++    WW+    +Q I+R+      
Sbjct: 1437 RALATFKSDPTCTVFLITLRSGGVGLNLTAASHVMLM-DPWWNPSVEEQAIDRV-----H 1490

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNA 197
            + G  + V V   I   T++E +      K   +Q  L ++
Sbjct: 1491 RIGQDKPVCVKRFIMLGTVEERIRVLQAKKCQLVQSALASS 1531


>gi|242094948|ref|XP_002437964.1| hypothetical protein SORBIDRAFT_10g005630 [Sorghum bicolor]
 gi|241916187|gb|EER89331.1| hypothetical protein SORBIDRAFT_10g005630 [Sorghum bicolor]
          Length = 1147

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 32  CLQLANGAVYYDEEK----------HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
             +L       DE                    K++ L+ ++ K       +++   F  
Sbjct: 394 LRKLCCHGFMIDEPDFEPANPEEGLRRLLDSSGKMQLLDKMMVKLKEQGHRVLIYSQFQH 453

Query: 80  DLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            L  L+              G+    +    I  +N              + G G+NL  
Sbjct: 454 MLDLLEDYLSYRKWSYERIDGKISGAERQIRIDRFNAKNSTRFCFLLSTRAGGLGINL-A 512

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ +   W+     Q + R       + G    V +Y L+++ TI+E ++Q  + K
Sbjct: 513 TADTVIIYDSDWNPHADLQAMAR-----AHRLGQTSKVMIYRLVSRGTIEERMMQLTKKK 567

Query: 188 STIQDLLLNALKK 200
             ++ L++  L K
Sbjct: 568 ILLEHLVVGRLTK 580


>gi|294867966|ref|XP_002765317.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239865330|gb|EEQ98034.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 1182

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 25/164 (15%)

Query: 52   HDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------- 96
               KI AL      +  +   A  +V   F   L  L +   + R +             
Sbjct: 1006 SSSKIDALITRVLEMRRQDPNAKGLVFSCFVKLLE-LSQYHLKARGISTFIIHGSIPLAV 1064

Query: 97   DPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I+ +         LL    ++ G GLNLQ   ++ +    WW+    +Q I+R   
Sbjct: 1065 RTRIIRAFIESPASDCSLLLVSISAGGEGLNLQRASHVFIL-DPWWNPAVEKQAIQRC-- 1121

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G ++ V  ++LI++NTI+E +      K  I D  +  
Sbjct: 1122 ---HRLGQQQIVRSHHLISENTIEERIKALQEKKQLIFDGTIGG 1162


>gi|255082205|ref|XP_002508321.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523597|gb|ACO69579.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 776

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
           +K L+ I  K+  +  ++   +   L  L+                  + +       +N
Sbjct: 610 VKLLDEI--KSKGSRPLIFSQWKIVLDILEWVLRSRGHVFVRLDGSTDVHERQQICDAFN 667

Query: 106 EG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               +I        + G GLNL  G + ++     ++ +  +Q  +R       + G  R
Sbjct: 668 RPGSEIFAFLLSTRAGGQGLNLT-GADTVIIHDCDFNPQIDRQAEDRC-----HRLGQTR 721

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+ L+   T+DE ++Q    K  +   +L+  K 
Sbjct: 722 PVTVHRLVTAGTVDERIVQIAERKLDLDAAVLSDTKA 758


>gi|158298992|ref|XP_319118.4| AGAP009980-PA [Anopheles gambiae str. PEST]
 gi|157014154|gb|EAA13923.4| AGAP009980-PA [Anopheles gambiae str. PEST]
          Length = 881

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
               K + L+ ++ K       +++   F   L  +++             G T   +  
Sbjct: 681 TSSGKFRQLDELLPKMKEEGHRVLIFSQFTMMLDIMERYLKIRKHGFLRLDGSTAVTERQ 740

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +    +  + +      + G G+NL     +++         +     ++    R  
Sbjct: 741 ELIDQYTQDPDLFIFLLSTKAGGLGINLTAADTVIIHD------IDFNPYNDKQAEDRAH 794

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K+ V +Y LI++ TI+E +L   + K  ++  +  
Sbjct: 795 RMGQKKPVTIYKLISEGTIEEGMLMIAQQKLQLEKDVTE 833


>gi|156086702|ref|XP_001610760.1| SNF2 helicase [Babesia bovis T2Bo]
 gi|154798013|gb|EDO07192.1| SNF2 helicase, putative [Babesia bovis]
          Length = 894

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 82/224 (36%), Gaps = 32/224 (14%)

Query: 2   KQYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           + Y    R    DL  E+    +      +  ++  +  N    +        D      
Sbjct: 337 RLYKDLLRRTVPDLGAEDSHSSVVKVQLLNLAMQLRKACNHPYLFEGWEDRDADPFGEHL 396

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
             +  K+  ++ ++ +     + I++       L  L+              G T  ++ 
Sbjct: 397 VENAGKLNVVDKLLRRLLKANSRILIFSQMARMLDILEDYCRMRGYSYFRIDGNTSGEER 456

Query: 99  CT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N+   ++ +      + G G+NL    ++++ +   W+ +   Q I+R     
Sbjct: 457 DDQISSFNDPNSEVSIFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAIDR----- 510

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY L+ + TI+E +++R   K  +   ++ + +
Sbjct: 511 AHRIGQSKTVHVYRLVHEYTIEEKIIERATIKLQLDSAVIQSGR 554


>gi|145608774|ref|XP_369873.2| hypothetical protein MGG_06388 [Magnaporthe oryzae 70-15]
 gi|145016204|gb|EDK00694.1| hypothetical protein MGG_06388 [Magnaporthe oryzae 70-15]
          Length = 1435

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKA 58
            + Y++  +     +         +   +   +QL    N    +DE ++     +     
Sbjct: 805  RLYNQMVKHQKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 864

Query: 59   LE------VIIEK------ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD 97
            L        ++++      A+   +++ +   + +           +Q     G T  +D
Sbjct: 865  LWRTAGKFELLDRVLPKYKASGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 924

Query: 98   PCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  ++N    P  +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 925  RSDLLYQFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 978

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ ++++E +L R R K  +   ++ A +
Sbjct: 979  RAHRIGQKNEVRILRLISSSSVEEKILDRARFKLDMDGKIIQAGR 1023


>gi|30687235|ref|NP_197432.2| homeotic gene regulator, putative [Arabidopsis thaliana]
 gi|332005300|gb|AED92683.1| Homeotic gene regulator [Arabidopsis thaliana]
          Length = 1064

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 26/190 (13%)

Query: 28  KTVKCLQLAN------GAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
            T++  +  N      GA Y   +K        K + L+ ++ K       I++      
Sbjct: 663 LTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTR 722

Query: 80  DLARLQ---------KAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            +  L+              G T  D+    ++++NE   P  +      + G GLNLQ 
Sbjct: 723 LIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQT 782

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ F   W+ +  QQ  +R       + G K+ V V+ L++  +I+E++L+R + K
Sbjct: 783 -ADTIIIFDSDWNPQMDQQAEDR-----AHRIGQKKEVRVFVLVSIGSIEEVILERAKQK 836

Query: 188 STIQDLLLNA 197
             I   ++ A
Sbjct: 837 MGIDAKVIQA 846


>gi|149639471|ref|XP_001508174.1| PREDICTED: similar to hCG32740 [Ornithorhynchus anatinus]
          Length = 968

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 23/173 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR-------- 92
           D+  +WK     K+  +E +++        +++       L  + + F +G+        
Sbjct: 467 DQFGYWKR--SGKMIVVESLLKIWHKQGHRVLLFSQSRQMLH-ILEVFLRGQKYSYLKMD 523

Query: 93  ---TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              T+      I  +NE   I +        G G+NL  G N ++ +   W+     Q  
Sbjct: 524 GTTTIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTDTQAR 582

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ER       + G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 583 ERAW-----RIGQKRQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 630


>gi|84998504|ref|XP_953973.1| recombinational repair (RAD54 ) protein [Theileria annulata]
 gi|65304971|emb|CAI73296.1| recombinational repair (RAD54 homologue) protein [Theileria
           annulata]
          Length = 806

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 63  IEKANAAPIIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQEWNEGKIP-- 110
           I K +   +++  ++   L    RL K           G ++ K    +  +N+      
Sbjct: 501 IRKNSNDRVVIISNYTQTLDLFERLCKECSYPFERLDGGTSIKKRHKLVTTFNDPNSNSF 560

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N LV F   W+    +Q + R+      + G  +  ++Y  
Sbjct: 561 VFLLSSKAGGCGINL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQTKVCYIYRF 614

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
            +  TI+E + QR   K  +  +L+
Sbjct: 615 FSTGTIEEKIYQRQICKDGLSSMLV 639


>gi|330797032|ref|XP_003286567.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
 gi|325083472|gb|EGC36924.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
          Length = 1281

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
              K   ++ I+ K +A+   +++       +  +++ F           G T  ++   
Sbjct: 790 SSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTYLRLDGSTKPEERAH 849

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + EWN    P  +      + G G+NLQ   + ++ F   W+ +   Q  +R       
Sbjct: 850 LVVEWNRPDSPFWIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQMDLQAQDRC-----H 903

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G   AV VY LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 904 RIGQTNAVNVYRLISANSIEEKILERATDKLEIDAKIIQA 943


>gi|289619967|emb|CBI53411.1| unnamed protein product [Sordaria macrospora]
          Length = 1172

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPAS 118
            IIE            F      +      G+T  KD  T+  Q  N   + +       
Sbjct: 760 DIIEA-----------FVRRQDGINYLRMDGKTPVKDRQTLVDQFNNNPDLHIFLLTTKV 808

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G NL  G N ++ F   W+     Q  ER       + G K+ V +Y L+   TI+E
Sbjct: 809 GGLGTNLT-GANRVIIFDPDWNPSTDVQARERAW-----RLGQKKEVTIYRLMTAGTIEE 862

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +  R   K  + + +L   K++T
Sbjct: 863 KIYHRQIFKQFLSNKVLKDPKQQT 886


>gi|169610587|ref|XP_001798712.1| hypothetical protein SNOG_08399 [Phaeosphaeria nodorum SN15]
 gi|160702104|gb|EAT84675.2| hypothetical protein SNOG_08399 [Phaeosphaeria nodorum SN15]
          Length = 1203

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCT 100
             K++ ++ ++   K      ++       L  LQK              G T  K+   
Sbjct: 723 SGKMQVVKELLSLWKKGGHKTLLFAQHRIMLDILQKFLDHIPEINYRRMDGETAIKNRQD 782

Query: 101 I--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +  N+  + +        G G+NL  G N ++ +   W+     Q  ER       +
Sbjct: 783 LVDEFNNDPNLHVFLLTTKVGGLGVNLT-GANRVIIYDPDWNPSTDIQARERSW-----R 836

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L++  TI+E +  R   K  + + +L   K+ 
Sbjct: 837 LGQKREVEIYRLMSAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 879


>gi|145503894|ref|XP_001437919.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405080|emb|CAK70522.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1741

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 42/188 (22%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA----------------------NAAPIIVAYHFNSDLA 82
            EK     H  K+ AL+ I+++                       N   ++V   F + L 
Sbjct: 1496 EKPDSYSHSGKMIALKDILQQLGFQSTDDAPQQQTQGDQITIYTNFNKVLVFSRFRAALQ 1555

Query: 83   RLQKAFPQGRT--------------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
             + +   + +                 + P   +   +  I +L       G GLNL   
Sbjct: 1556 LIAEQLLKTQFPGLQYLILDGSVPQTQRYPLVTKFNEDPDIRVLLLTTQVGGLGLNL-SS 1614

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             NI++ F   ++    QQ ++R       + G K  V V+ LI ++T++E ++   R KS
Sbjct: 1615 ANIVIMFDHDYNPVNDQQAMDR-----AHRIGQKNVVQVFRLIVKDTLEEKIMGIQRFKS 1669

Query: 189  TIQDLLLN 196
             I   ++N
Sbjct: 1670 AISKAIVN 1677


>gi|115400547|ref|XP_001215862.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191528|gb|EAU33228.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1087

 Score = 94.6 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 40  VYYDEE-KHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQG------ 91
           +Y +        +   KI+ L  I+  ++     IV   F S L +++    +       
Sbjct: 833 IYLNPGEGENDILPSTKIRHLMKILRRESADHKFIVFSVFTSMLDKIEPFLKRAGIGFAR 892

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   ++    +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 893 YDGGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 951

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I+R+      +      V +Y LI ++T++E +L     K  + ++ +  
Sbjct: 952 AIDRV-----HRLNQTLDVKIYKLIIKDTVEERILDLQDRKRELANVTIEG 997


>gi|198428806|ref|XP_002129178.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
           intestinalis]
          Length = 936

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 85/215 (39%), Gaps = 29/215 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------YDEEKHWKEV--HDEKIK 57
           +RE       E++   + ++  ++  +  N             D  +  +E+     K++
Sbjct: 658 EREDRMTYDDESVVNVSLSNLMMQLRKCCNHPYLIKYPLIPGTDIFRVDEELISSSGKLQ 717

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-IQEWN 105
            L+ ++   K     I++     S L  L+              G T  +     I E+N
Sbjct: 718 LLDRMLPVLKKKGHKILLFSQMTSLLDILEDFCNFRNHSYVRLDGSTKCEVRQERIDEYN 777

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  + +      + G G+NL    + +V +   W+ +   Q  +R       + G  R+
Sbjct: 778 RDPDLFIFLLSTRAGGLGINLT-SADTVVIYDSDWNPQNDLQAQDRC-----HRIGQTRS 831

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V +Y  ++ NT+D+ +++R   K  ++ +++N  K
Sbjct: 832 VLIYRFVSSNTVDQFMVERAEAKRVLERMIINRNK 866


>gi|300121668|emb|CBK22243.2| unnamed protein product [Blastocystis hominis]
          Length = 912

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
            EK   +    K++ L  ++ +        ++    +  L   +                
Sbjct: 512 PEKRLLQYDCGKLEVLSAMLPRLRQEGHRCLLFTQMSRMLDIFETFLNMHHFTYLRMDGS 571

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L +    ++++N    + +      S G G+NL  G + ++F+   W+     Q    
Sbjct: 572 TPLPQRQKMMEKFNNDNQVFVFILSTRSGGLGINL-VGADTVIFYDSDWNPAMDAQA--- 627

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G  R V +Y L++++T++E +L++   K  +  L L 
Sbjct: 628 --QDRAHRIGQTRDVHIYRLVSESTVEENILKKANQKRHLSQLSLE 671


>gi|50557340|ref|XP_506078.1| YALI0F31053p [Yarrowia lipolytica]
 gi|49651948|emb|CAG78891.1| YALI0F31053p [Yarrowia lipolytica]
          Length = 1869

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 20/195 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                +++ N+A K     +L       + +    +    K +  E  +   +    ++  
Sbjct: 1600 GATGVKSINNAPKLQALQRLLLDCGIGETKGAEAKNGTSKKQHSEGDVPVISQHRALIFC 1659

Query: 76   HFNSDLARL-----QKAFPQGRTLDKDPCT--------IQEWN-EGKIPLLFAHPASCGH 121
                 L  +     +K  P    +  D  T        +Q++N +  I +L       G 
Sbjct: 1660 QLKDMLDIVENELFKKYMPTVTFMRLDGSTEARHRHDIVQKFNADPSIDVLLLTTHVGGL 1719

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL  G + ++F    W+     Q ++R       + G K+ V VY LI +NT++E ++
Sbjct: 1720 GLNLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRIGQKKVVNVYRLITRNTLEEKIM 1773

Query: 182  QRLRTKSTIQDLLLN 196
               + K  I   ++N
Sbjct: 1774 GLQKFKLNIASTVIN 1788


>gi|300122089|emb|CBK22663.2| unnamed protein product [Blastocystis hominis]
          Length = 924

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQG 91
            EK   +    K++ L  ++ +        ++    +  L   +                
Sbjct: 512 PEKRLLQYDCGKLEVLSAMLPRLRQEGHRCLLFTQMSRMLDIFETFLNMHHFTYLRMDGS 571

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L +    ++++N    + +      S G G+NL  G + ++F+   W+     Q    
Sbjct: 572 TPLPQRQKMMEKFNNDNQVFVFILSTRSGGLGINL-VGADTVIFYDSDWNPAMDAQA--- 627

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G  R V +Y L++++T++E +L++   K  +  L L 
Sbjct: 628 --QDRAHRIGQTRDVHIYRLVSESTVEENILKKANQKRHLSQLSLE 671


>gi|255573018|ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223533174|gb|EEF34931.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 1028

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDE--KIKALEVIIEKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLD 95
             D EK+W E       ++ LE +  +++ +  I+   + + L  LQ    ++      LD
Sbjct: 852  IDIEKNWVESSKVIVLLQELENL--RSSGSKSILFSQWTAFLDLLQIPLSRSGISYVRLD 909

Query: 96   ------KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    I++++E   I +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 910  GTLNQQQRERVIKQFSEDDSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAV 968

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G  + V +   I + T++E +      K 
Sbjct: 969  MRI-----HRIGQTKPVMIKRFIVKGTVEERMEAVQARKQ 1003


>gi|146097991|ref|XP_001468285.1| DNA-dependent ATPase; transcription activator [Leishmania infantum]
 gi|134072652|emb|CAM71368.1| putative DNA-dependent ATPase [Leishmania infantum JPCM5]
          Length = 1103

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 41/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFN-----SASKTV---KCLQLANGAVYYDEEKH-WKEVHDEKI 56
           K QRE Y ++  ++ E  N      AS T       ++ N     D  +     V DEK+
Sbjct: 407 KKQREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKL 466

Query: 57  -----------KALEVIIEKANAA-PIIVAYHFNSDLARLQ---------KAFPQGRT-- 93
                      K L  +         +++   F S L  L+              G T  
Sbjct: 467 VRTSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSG 526

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            D+D   +  +N       +      + G G+NLQ   N ++ +   W+ +   Q     
Sbjct: 527 YDRDSQ-MASFNSPSSDYFIFLLSTRAGGLGINLQ-AANHVILYDSDWNPQMDLQA---- 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G KR+V VY  +   T++E + +R   K  +  +++ 
Sbjct: 581 -QDRAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQ 624


>gi|322502240|emb|CBZ37323.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1103

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 41/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFN-----SASKTV---KCLQLANGAVYYDEEKH-WKEVHDEKI 56
           K QRE Y ++  ++ E  N      AS T       ++ N     D  +     V DEK+
Sbjct: 407 KKQREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKL 466

Query: 57  -----------KALEVIIEKANAA-PIIVAYHFNSDLARLQ---------KAFPQGRT-- 93
                      K L  +         +++   F S L  L+              G T  
Sbjct: 467 VRTSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSG 526

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            D+D   +  +N       +      + G G+NLQ   N ++ +   W+ +   Q     
Sbjct: 527 YDRDSQ-MASFNSPSSDYFIFLLSTRAGGLGINLQ-AANHVILYDSDWNPQMDLQA---- 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G KR+V VY  +   T++E + +R   K  +  +++ 
Sbjct: 581 -QDRAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQ 624


>gi|307776522|pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-Atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 613

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 614 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 667

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 668 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 706


>gi|71022165|ref|XP_761313.1| hypothetical protein UM05166.1 [Ustilago maydis 521]
 gi|46097807|gb|EAK83040.1| hypothetical protein UM05166.1 [Ustilago maydis 521]
          Length = 1106

 Score = 94.6 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
              KI+AL+ +I +  A    I++   F   L  L               G T  +D   +
Sbjct: 916  SGKIQALQRLIPEIQAKGDRILIFSQFTMVLDILCVCLQHMGVKYVGFTGSTQVQDRQVL 975

Query: 102  QEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +   N+  I +      + G G+NL    N ++ F   ++    +Q  +R       + 
Sbjct: 976  VDQFTNDASITVFLLSTKAGGLGINL-IAANWVILFDQDFNPHNDKQAADR-----SYRM 1029

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  + V V  L+++ TIDE +      K  + D +
Sbjct: 1030 GQTKPVTVVKLLSRGTIDEDIHALGERKLQLADRV 1064


>gi|241809906|ref|XP_002414557.1| helicase, putative [Ixodes scapularis]
 gi|215508768|gb|EEC18222.1| helicase, putative [Ixodes scapularis]
          Length = 790

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC-TIQEWNEG--KIPLL 112
           KA  + ++V       L  L+              G+T  ++   +I E+N    +  L 
Sbjct: 224 KAQGSRVLVFSQMTRMLDILEDYCLWRRYGYCRLDGQTPHEERTLSINEFNRPGSEKFLF 283

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ F   W+ +   Q ++R       + G  +AV V+ LI 
Sbjct: 284 MLSTRAGGLGINL-ATADVVILFDSDWNPQVDLQAMDR-----AHRIGQTKAVRVFRLIT 337

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           +NT++E +++R   K  +  +++ 
Sbjct: 338 ENTVEERIVERAEVKLRLDTVVIQ 361


>gi|170587941|ref|XP_001898732.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158592945|gb|EDP31540.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 798

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------------LDKDPCTIQEWN- 105
            I +  N    ++     S +  L   F  G                +++     +++N 
Sbjct: 536 EISQTGNGHRALIFCQRLSAVQLLVNLFSSGELGSDIRFAVLDGTVPVNERHAVAEKFNV 595

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I +L       G GLNL  G +I++F    W+  +  Q ++R       + G K AV
Sbjct: 596 DPSIHVLILTTNIGGEGLNLT-GADIVIFLEHDWNPVKDLQAMDR-----AHRIGQKCAV 649

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + +I++ +++  + K+   + L+ A
Sbjct: 650 NVYRLITEGSIEQKIMRLQKFKTDTANALVGA 681


>gi|308813301|ref|XP_003083957.1| Swi2/Snf2-related protein DDM1; decrease in DNA methylation 1; CHR1
           (ISS) [Ostreococcus tauri]
 gi|116055839|emb|CAL57924.1| Swi2/Snf2-related protein DDM1; decrease in DNA methylation 1; CHR1
           (ISS) [Ostreococcus tauri]
          Length = 708

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
           K++ L+ +++  +A    ++V       L  L+  F Q              D     I 
Sbjct: 473 KMQLLDRLMKKLRARGHKVLVFSQMTRMLDLLESYFQQRGENVCRIDGSVKQDDRREFIA 532

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N +    +      + G G+NL   G+ ++ +   W+  +  Q ++R+      + G 
Sbjct: 533 KFNTDPDYGIFLLSTRAGGLGINLT-AGDTVIIYDSDWNPHQDLQAMDRV-----HRIGQ 586

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY L    +++  +L++  +K  ++ L++  
Sbjct: 587 TKPVHVYRLATAKSVEGKMLKKAASKLALEKLVVTG 622


>gi|149209815|ref|XP_001522282.1| hypothetical protein MGCH7_ch7g389 [Magnaporthe oryzae 70-15]
 gi|86196344|gb|EAQ70982.1| hypothetical protein MGCH7_ch7g389 [Magnaporthe oryzae 70-15]
          Length = 2047

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R+ Y D   +N     +++K  KC QL +      E+     V    +  LEV I     
Sbjct: 1852 RKRYFDYLDDNWI---TSAKISKCTQLLSEIRQKGEKTLIFSVFTSLLDLLEVGI----- 1903

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
                       DL      +      D     +Q++       ++     +   GLNL  
Sbjct: 1904 ---------RHDLGLRVCRYDGSLGRDARDKAVQDFQFNPNATIMLVSLRAGNAGLNLTA 1954

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               +++    +W+     Q ++R       + G  R+V V  L+ + T+++ +++    K
Sbjct: 1955 ASQVIIM-DPFWNPYIEMQAVDR-----AHRMGQLRSVHVQRLVVKETVEDRIIKLQEQK 2008

Query: 188  STIQDLLLNALKKETI 203
             T+ +  LN  + + +
Sbjct: 2009 RTLVEAALNGDEAKNL 2024


>gi|242078375|ref|XP_002443956.1| hypothetical protein SORBIDRAFT_07g005035 [Sorghum bicolor]
 gi|241940306|gb|EES13451.1| hypothetical protein SORBIDRAFT_07g005035 [Sorghum bicolor]
          Length = 166

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 72  IVAYHFNSDLARLQKAF----PQGRTLDKD------PCTIQEWN-EGKIPLLFAHPASCG 120
           IV   +   L  L+ +      Q R LD           ++++N + ++ ++     +  
Sbjct: 15  IVFSQWTGMLDLLENSLNTNLIQYRRLDGTMSLNLRDKAVKDFNTDPEVRVMIMSLKAGN 74

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLN+      ++   LWW+     Q I+R       + G  R V V  L  ++T+++ +
Sbjct: 75  LGLNM-VAACHVILLDLWWNPYAEDQAIDR-----AHRIGQTRPVTVSRLTVKDTVEDRI 128

Query: 181 LQRLRTKSTI 190
           L     K  +
Sbjct: 129 LALQEEKRAM 138


>gi|317142811|ref|XP_001819108.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1137

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEV-HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KA 87
            +Y +      +V    KI+ L  I+  +++    IV   F S L +++            
Sbjct: 883  IYLNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFAR 942

Query: 88   FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            +  G   D    ++ +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 943  YDGGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1001

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 1002 AIDRV-----HRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1047


>gi|296825556|ref|XP_002850834.1| transcriptional accessory protein [Arthroderma otae CBS 113480]
 gi|238838388|gb|EEQ28050.1| transcriptional accessory protein [Arthroderma otae CBS 113480]
          Length = 1905

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +LA GA Y    +        ++K +  I++      ++ +  F                
Sbjct: 1675 ELATGASYVSPHRALIF---CQMKEMLDIVQNDVLRKLLPSVQFL--------RLDGSVE 1723

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1724 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1780

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1781 ---AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVTSTVVN 1821


>gi|169616788|ref|XP_001801809.1| hypothetical protein SNOG_11569 [Phaeosphaeria nodorum SN15]
 gi|160703265|gb|EAT81277.2| hypothetical protein SNOG_11569 [Phaeosphaeria nodorum SN15]
          Length = 1535

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++   +A     ++       L  L++             G 
Sbjct: 1220 PDKRLLQYDCGKLQRLATLLRDLQAGGHRALIFTQMTKVLDVLEQFLNIHGHRYLRLDGS 1279

Query: 93   TLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N    I        S G G+NL  G + ++F+ L W+       +++
Sbjct: 1280 TKVEQRQILTDRFNSDDRILCFILSSRSGGLGINLT-GADTVIFYDLDWN-----PAMDK 1333

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1334 QCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1379


>gi|90399293|emb|CAH68165.1| H0323C08.5 [Oryza sativa Indica Group]
 gi|116312065|emb|CAJ86429.1| H0303G06.18 [Oryza sativa Indica Group]
          Length = 1051

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---------SDLARLQ-KAFPQGRTLDKDPCTIQEWN- 105
              +E    +   +  IV   +           D +R++ +      +L+     ++E+N 
Sbjct: 885  DTMESSPSEVAPSKAIVFSQWTGLLDLLELSLDSSRIKFRRLDGAMSLNLREAAVREFNT 944

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + ++ ++     +   GLN+      ++    WW+     Q ++R       + G  R V
Sbjct: 945  DPEVRVMLMSLKAGNLGLNM-VAACHVIMIDPWWNPYAEDQAVDR-----AHRIGQTRPV 998

Query: 166  FVYYLIAQNTIDELVLQRLRTKST-IQDL 193
             V  L  ++T+++ +L     K   +Q  
Sbjct: 999  TVSRLTIKDTVEDRILALQEKKRKMVQSA 1027


>gi|119495345|ref|XP_001264459.1| SNF2 family helicase/ATPase PasG, putative [Neosartorya fischeri
           NRRL 181]
 gi|119412621|gb|EAW22562.1| SNF2 family helicase/ATPase PasG, putative [Neosartorya fischeri
           NRRL 181]
          Length = 867

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT-IQEWNEGK-IPLLFA 114
               I++   F + L  LQ               G     D    I+ +N      +   
Sbjct: 640 KGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKAFNSDTGYKIFLL 699

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ ++  Q        R  + G  + V VY L  + 
Sbjct: 700 STRAGGQGINL-VAADTVILYDSDWNPQQDLQA-----QDRAHRIGQTKPVIVYRLATKG 753

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T+++ +L++  +K  ++ L++   K
Sbjct: 754 TVEQTLLEKADSKRRLERLVIQKGK 778


>gi|115460732|ref|NP_001053966.1| Os04g0629300 [Oryza sativa Japonica Group]
 gi|39546244|emb|CAE04253.3| OSJNBa0089N06.14 [Oryza sativa Japonica Group]
 gi|113565537|dbj|BAF15880.1| Os04g0629300 [Oryza sativa Japonica Group]
 gi|125549851|gb|EAY95673.1| hypothetical protein OsI_17539 [Oryza sativa Indica Group]
 gi|125591732|gb|EAZ32082.1| hypothetical protein OsJ_16271 [Oryza sativa Japonica Group]
 gi|215717116|dbj|BAG95479.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1051

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---------SDLARLQ-KAFPQGRTLDKDPCTIQEWN- 105
              +E    +   +  IV   +           D +R++ +      +L+     ++E+N 
Sbjct: 885  DTMESSPSEVAPSKAIVFSQWTGLLDLLELSLDSSRIKFRRLDGAMSLNLREAAVREFNT 944

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + ++ ++     +   GLN+      ++    WW+     Q ++R       + G  R V
Sbjct: 945  DPEVRVMLMSLKAGNLGLNM-VAACHVIMIDPWWNPYAEDQAVDR-----AHRIGQTRPV 998

Query: 166  FVYYLIAQNTIDELVLQRLRTKST-IQDL 193
             V  L  ++T+++ +L     K   +Q  
Sbjct: 999  TVSRLTIKDTVEDRILALQEKKRKMVQSA 1027


>gi|289769357|ref|ZP_06528735.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289699556|gb|EFD66985.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 767

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 30/197 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A            +  K++ L  I+++A  N    
Sbjct: 514 ELSASDEEAYREAVRAGNFMAMRRAAYMS-------SGNSAKLERLREIVQEAGENGQKT 566

Query: 72  IVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
           +V  +F   LA +++A                 G    +    + ++   + P +L    
Sbjct: 567 VVFSNFKDVLAVVKEALAVETTRVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQI 626

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   +++V         + +  IE   V R  + G  R V V+ L+A   +
Sbjct: 627 QAAGVGLNMQ-AASVVVICEP-----QIKPTIEHQAVARAHRMGQVRPVRVHRLLATGGV 680

Query: 177 DELVLQRLRTKSTIQDL 193
           DE +++ L  K+ + D 
Sbjct: 681 DERMVKMLEAKTRLFDA 697


>gi|50293735|ref|XP_449279.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528592|emb|CAG62253.1| unnamed protein product [Candida glabrata]
          Length = 1476

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +        ++   
Sbjct: 708 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRILDILGDYLSIKGINFQRLDGTVPSNQRRI 767

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 768 AIDHFNAPGSDDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 821

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 822 RIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 860


>gi|145610193|ref|XP_001410153.1| hypothetical protein MGG_12631 [Magnaporthe oryzae 70-15]
 gi|145017551|gb|EDK01914.1| hypothetical protein MGG_12631 [Magnaporthe oryzae 70-15]
          Length = 1334

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R+ Y D   +N     +++K  KC QL +      E+     V    +  LEV I     
Sbjct: 1139 RKRYFDYLDDNWI---TSAKISKCTQLLSEIRQKGEKTLIFSVFTSLLDLLEVGI----- 1190

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
                       DL      +      D     +Q++       ++     +   GLNL  
Sbjct: 1191 ---------RHDLGLRVCRYDGSLGRDARDKAVQDFQFNPNATIMLVSLRAGNAGLNLTA 1241

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               +++    +W+     Q ++R       + G  R+V V  L+ + T+++ +++    K
Sbjct: 1242 ASQVIIM-DPFWNPYIEMQAVDR-----AHRMGQLRSVHVQRLVVKETVEDRIIKLQEQK 1295

Query: 188  STIQDLLLNALKKETI 203
             T+ +  LN  + + +
Sbjct: 1296 RTLVEAALNGDEAKNL 1311


>gi|68483984|ref|XP_714082.1| hypothetical protein CaO19.11916 [Candida albicans SC5314]
 gi|68484390|ref|XP_713881.1| hypothetical protein CaO19.4437 [Candida albicans SC5314]
 gi|46435400|gb|EAK94782.1| hypothetical protein CaO19.4437 [Candida albicans SC5314]
 gi|46435612|gb|EAK94990.1| hypothetical protein CaO19.11916 [Candida albicans SC5314]
          Length = 859

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 43/225 (19%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q+ LY  +  ++I+A N A+             +QL               G  Y  +E
Sbjct: 216 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 275

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 + +K+  L+ +++  +   + +++    +  L  L         Q     G+T 
Sbjct: 276 HLV--YNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTE 333

Query: 95  DKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R 
Sbjct: 334 HSDRINAIDEYNKPGSEKFIFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR- 391

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V+  I +  I+E VL+R   K  +  L++ 
Sbjct: 392 ----AHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQ 432


>gi|320588259|gb|EFX00734.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1741

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 24/203 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + +R+ +         A    +   K L +       D        H  K+  L  I+++
Sbjct: 1189 QRERDAHHPSSASPYSATLPLAVVQKLLSIGQKRNIDDLH------HSSKVMVLMGILDE 1242

Query: 66   A--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLLF 113
            A      +++       L  L+  F + +                  ++ +N G+  +  
Sbjct: 1243 AREAGDKVLIFSQSKLVLDYLEDVFQRKKRRYSRLDGDTVVRWRQGMVKSFNAGRDEIYL 1302

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLN+ +G N +V F   W+    QQ I R       + G  + VFVY+LI  
Sbjct: 1303 ISTTAGGVGLNI-HGANRVVIFDFKWNPMHEQQAIGR-----AYRIGQTKPVFVYWLITG 1356

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
             T + ++  +   K+ +   +++
Sbjct: 1357 GTFETVLHDQAVFKTQLASRVVD 1379


>gi|213408333|ref|XP_002174937.1| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces japonicus
            yFS275]
 gi|212002984|gb|EEB08644.1| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1489

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 76/226 (33%), Gaps = 33/226 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIK 57
            ++ Y + ++     +                 +QL    N    ++E +   +       
Sbjct: 923  LRLYQQMKKHGILFVADGEKGRTGMKGLQNTVMQLKKICNHPFVFEEVEQAIDPEGTNYD 982

Query: 58   ALE------VIIEKA------NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK 96
             L        ++++            ++ +     ++ +         +     G T  +
Sbjct: 983  LLWRAAGKFELLDRVLPKLFRTGHRTLIFFQMTQIMSIMEDYLRYRNWKYLRLDGSTKAE 1042

Query: 97   DPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D   +  ++N+    I +      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 1043 DRSALLADFNDRNSDIYVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 1096

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  + V +  LI   +I+E +L R + K  +   ++ A K
Sbjct: 1097 DRAHRIGQTKEVRILRLITDKSIEENILARAQYKLDLDGKVIQAGK 1142


>gi|294656125|ref|XP_002770225.1| DEHA2C15774p [Debaryomyces hansenii CBS767]
 gi|199430877|emb|CAR65588.1| DEHA2C15774p [Debaryomyces hansenii]
          Length = 1100

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDP 98
            ++  KI  L  I++K       +++   F   L  L+K             G+T +D   
Sbjct: 925  LNGGKISKLIEILDKIINKKEKVLIFSLFTQMLDILEKVLTISNMKFLRLDGQTSVDTRQ 984

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I ++ + + IP+      + G G+NL    N ++ F   ++  + +Q  +R       
Sbjct: 985  DLIDKFYDDETIPVFLLSTKAGGFGINL-VAANHVIIFDQSFNPHDDKQAEDR-----AH 1038

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G    V V  LIA+NTI+E +LQ    K  +   +
Sbjct: 1039 RVGQTSEVVVTKLIAKNTIEENMLQLAENKLQLDQSI 1075


>gi|126522468|gb|AAI32448.1| Ercc6 protein [Mus musculus]
          Length = 1157

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            HW+     K+  +E +++        +++       L  L+                 T
Sbjct: 505 GHWRR--SGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTT 562

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +      I ++NE   I +        G G+NL  G N ++ +   W+     Q  ER  
Sbjct: 563 IASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW 621

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 622 -----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 665


>gi|251773066|gb|EES53622.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 824

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN--SDL-- 81
            + +++ +++   + Y  + +    V  +++ AL   +        +V   +    D+  
Sbjct: 498 LTCSLQNMRMVCNSTYLIDPETDHGVKADELVALLDGLFSDPGTKAVVFSQWTRTHDIVI 557

Query: 82  ARLQKA------FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            RL         F  G   D+ P  ++ +  +    +      +   GLNLQ+  ++LV 
Sbjct: 558 RRLDARGIGSVSFHGGIPSDRRPALVERFREDPDCRVFL-STDAGSTGLNLQH-ASVLVN 615

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G KR V +   +A+  I+E +L  L  K ++ + +
Sbjct: 616 MDLPWNPAILEQRIARI-----HRMGQKRPVQIVNFVAKGGIEEGMLGLLSFKQSLSEGI 670

Query: 195 LNA 197
           L+ 
Sbjct: 671 LDG 673


>gi|255541128|ref|XP_002511628.1| helicase, putative [Ricinus communis]
 gi|223548808|gb|EEF50297.1| helicase, putative [Ricinus communis]
          Length = 860

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 37/234 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKHWKE 50
           + Y    R+    L   +  A N  S     +QL  A    Y         Y+E +H  +
Sbjct: 303 RVYMSILRKELPKLLALSSAASNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQ 362

Query: 51  VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEW 104
               K+  L+ +++K +     +I+       L  LQ      +     LD      + +
Sbjct: 363 -ASGKLIILDQLLKKLHGSGHRVIIFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERF 421

Query: 105 --------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                         +      + G GLNL    + ++F+   W+ +  +Q ++R      
Sbjct: 422 AAIRSFSGQAMNAFVFMISTRAGGVGLNL-VAADTVIFYEQDWNPQVDKQAVQR-----A 475

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-----DLLLNALKKETIHV 205
            + G    V    L+ ++T++E++++R   K  +      D ++    KE + V
Sbjct: 476 HRIGQMNHVLSINLVTRHTVEEVIMRRAEKKLQLSNNVLGDDVMEQKGKEPVGV 529


>gi|242207274|ref|XP_002469491.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731520|gb|EED85364.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1300

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L  ++ +  A    I++       L  L+              G T  +D   I +
Sbjct: 1097 KLQELARLLRERKAGGHRILIFTQMTKILDILEIFLNLHGYLYLRLDGATKIEDRQYITE 1156

Query: 103  EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N   +I    +   S G G+NL  G + ++F+   ++ +     ++R    R  + G 
Sbjct: 1157 RFNSDSRIFCFISSSRSGGVGINLT-GADTVIFYDSDFNPQ-----MDRQCEDRAHRIGQ 1210

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y  I+++T++E +L++   K ++ ++++ 
Sbjct: 1211 IRDVHIYRFISEHTVEEALLRKANQKRSLDNIVIQ 1245


>gi|225432582|ref|XP_002281240.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1103

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 79/190 (41%), Gaps = 26/190 (13%)

Query: 28  KTVKCLQLANGA-VYYDEEKHWKEV-----HDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
            +++  +  N   ++  +   W++         K + L+ ++ K       +++      
Sbjct: 678 LSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFELLDRLLPKLQKAGHRVLLFSQMTR 737

Query: 80  DLA---------RLQKAFPQGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            +           ++     G T  ++  T ++++N    P  +      + G GLNLQ 
Sbjct: 738 LMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 797

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ F   W+ +  QQ  +R       + G K+ V V+ L++  +I+E++L+R + K
Sbjct: 798 -ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 851

Query: 188 STIQDLLLNA 197
             I   ++ A
Sbjct: 852 MGIDAKVIQA 861


>gi|289618348|emb|CBI55072.1| unnamed protein product [Sordaria macrospora]
          Length = 972

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 21/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR------ 92
           DEE+   E    K  A+  +++ +        +I+   + S L  +Q    +        
Sbjct: 788 DEEELESETKSSKTDAVLRLVKDSLGKDAGNKVIIFSQWTSFLTIIQHQLDEAGYTYTRI 847

Query: 93  -----TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                T  +D        +    +L A    C  GLNL    N ++    WW      Q 
Sbjct: 848 DGSMNTAQRDAAIRALDYDPNTRILLASLGVCSVGLNL-VSANTVILADSWWAPAIEDQA 906

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++R+      + G  R   VY L+ +NTI+E VL   + K  +
Sbjct: 907 VDRV-----HRLGQTRETNVYRLVMENTIEERVLDIQKEKREL 944


>gi|169621462|ref|XP_001804141.1| hypothetical protein SNOG_13941 [Phaeosphaeria nodorum SN15]
 gi|160704260|gb|EAT78566.2| hypothetical protein SNOG_13941 [Phaeosphaeria nodorum SN15]
          Length = 1274

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 26/168 (15%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK---------------AFPQGRT 93
              K   LE +I+         +++   F   L   +                 F     
Sbjct: 666 ASGKFILLEKLIKHTVMNQGKKVLIFSGFTRTLDYTEDLLSLISNHGRDFKHLRFDGSTA 725

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    I+ +N       ++     + G G+NL    + ++F    W+ +   Q   R 
Sbjct: 726 RAKRNLDIRLFNQESSDYKVMLLSTRAGGLGINLTSAQD-VIFLDEDWNPQITLQAEAR- 783

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 + G  + V +Y +  Q T++E ++ R+R K  +   +  +++
Sbjct: 784 ----AHRIGQTKKVTIYKICTQGTVEEQMMGRIRKKLYLSAKITESMR 827


>gi|115623606|ref|XP_786706.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115939608|ref|XP_001193343.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1093

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 42   YDEEKHWKEVHDEKIKALEV--IIEKANAA--PIIVAYHFNSDLARLQK----------A 87
             D ++ W      K+ AL    + E+A       IV   F S L  L+K           
Sbjct: 902  DDTDREWH--SSAKVDALMECLLTERAADKTTKSIVVSQFTSFLDLLKKPLTEKGFKFCR 959

Query: 88   FPQGRTLDKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +       I+E+  N+   P +      + G GLNL    + L      W+    
Sbjct: 960  LDGSMSRIARTAAIREFSSNDPDSPQIFLLSLKAGGVGLNLT-AASRLYLLDPAWNPACE 1018

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +Q  +R       + G  + V +   + +++++E +L+   TK  +
Sbjct: 1019 EQCFDRC-----HRLGQTKDVTITKFLVRDSVEEAMLELQETKRQL 1059


>gi|118367847|ref|XP_001017133.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89298900|gb|EAR96888.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2184

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 20/160 (12%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
                 K+  L+ +++K       I++   F   L  L++             G    K+ 
Sbjct: 1137 VDTSGKMILLDKLVQKYKIEGKKILIFSQFVYMLNLLEEYLRYRQLKYEKIDGSVKSKER 1196

Query: 99   C-TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N+      +      + G G+NL    NI++ F   W+ +   Q   R     
Sbjct: 1197 QNAIDRFNDPDKKRDVFLLSTKAGGLGINLT-SANIVIIFDSDWNPQNDVQATAR----- 1250

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G K+ V VY  I + T +  + +R   K  +   + 
Sbjct: 1251 AHRIGQKQEVMVYRFITKKTYEAEMFERATKKLGLDQAIF 1290


>gi|50551421|ref|XP_503184.1| YALI0D23287p [Yarrowia lipolytica]
 gi|49649052|emb|CAG81384.1| YALI0D23287p [Yarrowia lipolytica]
          Length = 1660

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK-----TVKCLQLANGAVYYDEEKHWKEVHD--- 53
            K Y +  +     +      A  +  K      ++  ++ N    ++E +     +    
Sbjct: 943  KLYQQMIKHNVLFIGEGVQGATKTGLKGLNNQVMQLRKICNHPFVFEEVEDLVNPNRLTN 1002

Query: 54   -------EKIKALEVIIEK--ANAAPIIVAYH------FNSDLARLQK----AFPQGRTL 94
                    K + L+ I+ K  A    I++ +          D  RL+         G   
Sbjct: 1003 DNLWRTAGKFELLDRILPKFKAAGHRILMFFQMTQIMDIMEDFMRLKGWQYLRLDGGTKS 1062

Query: 95   DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + ++N    P         + G GLNLQ   + ++ +   W+  +  Q      
Sbjct: 1063 EDRSGLLGKFNAPDSPYFAFLLSTRAGGLGLNLQT-ADTVIIYDTDWNPHQDLQA----- 1116

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V +  LI +++++E +L+R   K  I   ++ A K
Sbjct: 1117 QDRAHRIGQTKEVRILRLITEDSVEENILERAHKKLDIDGKVIQAGK 1163


>gi|332190563|gb|AEE28684.1| SNF2 , helicase and zinc-finger domain-containing protein
            [Arabidopsis thaliana]
          Length = 1269

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          + F    T+      +Q++N    + ++    
Sbjct: 1114 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1173

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+      ++   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1174 KAASLGLNM-VAACHVIMLDLWWNPTTEDQAIDR-----AHRIGQTRPVKVVRFTVKDTV 1227

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1228 EDRILALQQKKRKM 1241


>gi|256785459|ref|ZP_05523890.1| bifunctional protein [Streptomyces lividans TK24]
          Length = 722

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 30/197 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A            +  K++ L  I+++A  N    
Sbjct: 469 ELSASDEEAYREAVRAGNFMAMRRAAYMS-------SGNSAKLERLREIVQEAGENGQKT 521

Query: 72  IVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
           +V  +F   LA +++A                 G    +    + ++   + P +L    
Sbjct: 522 VVFSNFKDVLAVVKEALAVETTRVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQI 581

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   +++V         + +  IE   V R  + G  R V V+ L+A   +
Sbjct: 582 QAAGVGLNMQ-AASVVVICEP-----QIKPTIEHQAVARAHRMGQVRPVRVHRLLATGGV 635

Query: 177 DELVLQRLRTKSTIQDL 193
           DE +++ L  K+ + D 
Sbjct: 636 DERMVKMLEAKTRLFDA 652


>gi|255084682|ref|XP_002504772.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226520041|gb|ACO66030.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1710

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 36/186 (19%)

Query: 27   SKTVKCLQL-------------ANGAVYYDEEKHWKEV---HDEKIKALEVIIEK--ANA 68
              +   +QL             A  A+      +  E       K+KAL+ ++ +  A  
Sbjct: 1062 KLSNLLMQLRKVCCHPFIFGDDAAKAIIGASGGNRVEALIEASGKLKALDEMLPRMRAGG 1121

Query: 69   APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLFAHP 116
              +++   F   L  L++                +L +       +N  +G+  +     
Sbjct: 1122 HKVLIFSQFTMMLDMLEEFCEARGHAHLRLDGSTSLARRRYETALFNKPDGRHFVYLCST 1181

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NLQ   + ++     W+    QQ        R  + G KR V V  +   N++
Sbjct: 1182 RAGGLGINLQ-SADTVILADPDWNPTYDQQA-----QDRAHRLGQKRPVTVIRMCHANSV 1235

Query: 177  DELVLQ 182
            +E +L 
Sbjct: 1236 EEGILA 1241


>gi|225897906|dbj|BAH30285.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1270

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          + F    T+      +Q++N    + ++    
Sbjct: 1115 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1174

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+      ++   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1175 KAASLGLNM-VAACHVIMLDLWWNPTTEDQAIDR-----AHRIGQTRPVKVVRFTVKDTV 1228

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1229 EDRILALQQKKRKM 1242


>gi|241952408|ref|XP_002418926.1| dna repair and recombination protein rdh54, putative [Candida
           dubliniensis CD36]
 gi|223642265|emb|CAX44234.1| dna repair and recombination protein rdh54, putative [Candida
           dubliniensis CD36]
          Length = 882

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
              I++  ++   L  L+                   +     + ++N    I +     
Sbjct: 609 KEKIVLISNYTKTLDLLETVLRKINLTFSRLDGSTPNNVRSKLVNQFNTNPDINVFLLSS 668

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y L     I
Sbjct: 669 KSGGMGINL-VGASRLILFDNDWNPATDLQSMSRI-----HRDGQVKPCFIYRLFTTGCI 722

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           DE + QR   K+ +    L+
Sbjct: 723 DEKIFQRQLVKNKLSSKFLD 742


>gi|156375433|ref|XP_001630085.1| predicted protein [Nematostella vectensis]
 gi|156217099|gb|EDO38022.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 69  APIIVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTI--QEWNEGKIPLLFA 114
             +++     S L  ++                 G T      +I  +  N+  I +L  
Sbjct: 28  HRVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNNDPSIDVLLL 87

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY L+ + 
Sbjct: 88  TTHVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLVTKG 141

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E ++   + K TI + +++
Sbjct: 142 TLEEKIMGLQKFKLTIANTVIS 163


>gi|1931638|gb|AAB65473.1| transcription factor RUSH-1alpha isolog; 18684-24052 [Arabidopsis
            thaliana]
          Length = 1227

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          + F    T+      +Q++N    + ++    
Sbjct: 1072 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1131

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+      ++   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1132 KAASLGLNM-VAACHVIMLDLWWNPTTEDQAIDR-----AHRIGQTRPVKVVRFTVKDTV 1185

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1186 EDRILALQQKKRKM 1199


>gi|42561912|ref|NP_172577.2| SNF2 domain-containing protein / helicase domain-containing protein /
            zinc finger protein-related [Arabidopsis thaliana]
 gi|332190562|gb|AEE28683.1| SNF2 , helicase and zinc-finger domain-containing protein
            [Arabidopsis thaliana]
          Length = 1226

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          + F    T+      +Q++N    + ++    
Sbjct: 1071 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1130

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+      ++   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1131 KAASLGLNM-VAACHVIMLDLWWNPTTEDQAIDR-----AHRIGQTRPVKVVRFTVKDTV 1184

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1185 EDRILALQQKKRKM 1198


>gi|66827541|ref|XP_647125.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475296|gb|EAL73231.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1159

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K   L+ I+ K    N + +++       L  L+                  +++  
Sbjct: 982  TSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQ 1041

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  ++  + IP+      S G G+NL    N+++F+ L ++ +     ++R    R  
Sbjct: 1042 SIIDHFSSKETIPVFLLSTNSGGLGINLTC-ANVVIFYDLSFNPQ-----VDRQAEDRAH 1095

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +R V +Y L+A+NT+D  + +    K  + D +L 
Sbjct: 1096 RLGQEREVIIYKLLAENTVDINIHESANQKKKLNDNVLE 1134


>gi|328868273|gb|EGG16651.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1147

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
               K + L  +I +      I+V       L  L+  F           G T   +   I
Sbjct: 953  SSAKCQKLVELINQHKDKSKILVFSQMTRVLDILEDVFDHVGLEFTRLDGSTPVTERQDI 1012

Query: 102  QEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +   N   I +      + G G+NL    NI++F+ + ++ +     ++R    R  + 
Sbjct: 1013 IDHFTNTDDIRVFLLSTLAGGLGINL-ISANIVIFYDMSFNPQ-----VDRQAEDRAHRL 1066

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY LI   ++D  +L    +K  + D +L 
Sbjct: 1067 GQTKEVTVYKLITNGSVDNYMLDLSNSKKRLNDSMLE 1103


>gi|297737012|emb|CBI26213.3| unnamed protein product [Vitis vinifera]
          Length = 1110

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 79/190 (41%), Gaps = 26/190 (13%)

Query: 28  KTVKCLQLANGA-VYYDEEKHWKEV-----HDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
            +++  +  N   ++  +   W++         K + L+ ++ K       +++      
Sbjct: 678 LSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFELLDRLLPKLQKAGHRVLLFSQMTR 737

Query: 80  DLA---------RLQKAFPQGRTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            +           ++     G T  ++  T ++++N    P  +      + G GLNLQ 
Sbjct: 738 LMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 797

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ F   W+ +  QQ  +R       + G K+ V V+ L++  +I+E++L+R + K
Sbjct: 798 -ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 851

Query: 188 STIQDLLLNA 197
             I   ++ A
Sbjct: 852 MGIDAKVIQA 861


>gi|238878835|gb|EEQ42473.1| chromatin remodelling complex ATPase chain ISW1 [Candida albicans
           WO-1]
          Length = 1017

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 43/225 (19%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q+ LY  +  ++I+A N A+             +QL               G  Y  +E
Sbjct: 374 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 433

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 + +K+  L+ +++  +   + +++    +  L  L         Q     G+T 
Sbjct: 434 HLV--YNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTE 491

Query: 95  DKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    I E+N+   +  +      + G G+NL    +I++ F   W+ +   Q ++R 
Sbjct: 492 HSDRINAIDEYNKPGSEKFIFLLTTRAGGLGINLT-SADIVILFDSDWNPQADLQAMDR- 549

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V+  I +  I+E VL+R   K  +  L++ 
Sbjct: 550 ----AHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQ 590


>gi|219115127|ref|XP_002178359.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410094|gb|EEC50024.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 535

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
           +  +Y +++     +  + I++L  ++EK           F   +  L+     GR   +
Sbjct: 365 SSLLYCEDDHTKCLIFAQFIQSL-DVVEKLL---------FKPHIPSLKYLRLDGRVPAR 414

Query: 97  DPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I +E+N   +I +L       G GLNL  G + ++F    ++     Q ++R+   
Sbjct: 415 RRYAIAEEFNRNDEIKVLLLTTRVGGLGLNLT-GADTVIFLEHDFNPFADLQAMDRV--- 470

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+AV VY L+  ++ID+ +++    K  + + ++NA
Sbjct: 471 --HRIGQKKAVCVYRLVLVDSIDQRIMKLQEKKLAMSEAIVNA 511


>gi|325117702|emb|CBZ53253.1| putative SNF2 family helicase [Neospora caninum Liverpool]
          Length = 1545

 Score = 94.2 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 21/156 (13%)

Query: 50   EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDK 96
             +   KI+ +  I+ +        ++   + + L  ++           K    G T  +
Sbjct: 1360 VMDSAKIRKMIEIVSEIKKKGEKALIFSQYTTYLDVVEECLTTFCGDIGKCRLDGSTAVE 1419

Query: 97   DPCT-IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            D    + E+    ++ L      + G GLNL      ++     W+ +      +R    
Sbjct: 1420 DRQALVDEFSTNPELTLFLLSTKAGGQGLNLT-AARTVILMDQDWNPQ-----NDRQAED 1473

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R  + G  + V +Y L  + T++E +L+  + K  +
Sbjct: 1474 RVHRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDL 1509


>gi|170095703|ref|XP_001879072.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164646376|gb|EDR10622.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 830

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQ 90
           C+ LA  A   +EE+         +K L  I E+++     I+   F S L  ++    +
Sbjct: 629 CVPLAIQAKEAEEERPSSAKTRMILKLLNDIDERSDCEEKTIIFSQFTSMLDLIEPFLSE 688

Query: 91  GRTL----------DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +   ++ +    K   ++     +   GLNL    N ++   LWW
Sbjct: 689 EGVKYVRYDGSMSAKEREVSLAKIKSSKSTRVILISFKAGSTGLNLT-ACNNVILVDLWW 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +     Q  +R       + G  R V ++ L   NT+++ +L     K  +    L+  K
Sbjct: 748 NPALEDQAFDR-----AHRFGQTRDVNIFKLKIDNTVEDRILALQDKKRQLAQAALSGDK 802


>gi|83766966|dbj|BAE57106.1| unnamed protein product [Aspergillus oryzae]
          Length = 1157

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEV-HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KA 87
            +Y +      +V    KI+ L  I+  +++    IV   F S L +++            
Sbjct: 903  IYLNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFAR 962

Query: 88   FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            +  G   D    ++ +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 963  YDGGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1021

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 1022 AIDRV-----HRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1067


>gi|317138160|ref|XP_001816716.2| ISWI chromatin-remodeling complex ATPase ISW2 [Aspergillus oryzae
           RIB40]
          Length = 1122

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 432 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 491

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 492 EHLV--YNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 549

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 550 AHEDRIAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 608

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 609 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 654


>gi|310800518|gb|EFQ35411.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1150

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
              IKAL  + ++      +V   F S L+ ++ A  +                    + E
Sbjct: 984  ALIKALRGLRKEQPRVKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNE 1043

Query: 104  WNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + E K   +L     + G GLNL      +     WW      Q I+R+      + G  
Sbjct: 1044 FQESKTFTVLLLSLRAGGVGLNLT-SAKRVFMMDPWWSFAVEAQAIDRV-----HRMGQD 1097

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              V VY  I + +++E +L+    K  I   L
Sbjct: 1098 EEVKVYRFIVKESVEERMLRVQDRKKFIATSL 1129


>gi|302915977|ref|XP_003051799.1| SNF2 family DNA-dependent ATPase domain-containing protein [Nectria
            haematococca mpVI 77-13-4]
 gi|256732738|gb|EEU46086.1| SNF2 family DNA-dependent ATPase domain-containing protein [Nectria
            haematococca mpVI 77-13-4]
          Length = 1890

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 32/207 (15%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y   QR    + +G +IE    A K      L        E               + + 
Sbjct: 1616 YDDTQR--ILNKKGTSIEDTQHAPKLTALRDLLVDCGIGVEGNESN----------DPLY 1663

Query: 64   EKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKI 109
            +       ++       L  +Q                      +K    + ++N +   
Sbjct: 1664 QPIKPHRALIFCQMKEMLDMVQNKVLKELLPSVSHLRLDGSVEANKRQDIVNKFNSDPSY 1723

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY 
Sbjct: 1724 DVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDLQAMDR-----AHRIGQKKVVNVYR 1777

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LI + T++E +L   R K  +   ++N
Sbjct: 1778 LITRGTLEEKILNLQRFKIDVASTVVN 1804


>gi|218457856|ref|YP_002418861.1| hypothetical protein PPSN_gp55 [Pseudomonas phage SN]
 gi|218379124|emb|CAT99710.1| hypothetical protein [Pseudomonas phage SN]
 gi|294663794|gb|ADF29348.1| putative helicase [Pseudomonas phage JG024]
          Length = 519

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD-KDPCTIQE 103
                LE ++E+     IIV      ++ +++              G T + +    I +
Sbjct: 360 VFTDLLEGLLEEDPERSIIVWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q        R  + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLT-AADVAIYYTTDEDNELRMQ-----SEDRNHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|159489044|ref|XP_001702507.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280529|gb|EDP06286.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 533

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR-----TLDKDPCTIQEWNEG 107
            L V+  +     ++V  ++ S L        ++ +P  R     T++K    ++ +N+ 
Sbjct: 360 MLHVLYTETTDRIVLV-SNYTSTLDLFVALCRERGYPFVRLDGTTTINKRQKLVKVFNDP 418

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K         + G GLNL  G N LV F   W+     Q   R+      + G ++ V
Sbjct: 419 VEKQFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDAQAAARVW-----RDGQRKRV 472

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           FVY  ++  +I+E V QR  +K  ++ L+
Sbjct: 473 FVYRFLSTGSIEEKVFQRQMSKEGLKQLV 501


>gi|291437491|ref|ZP_06576881.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340386|gb|EFE67342.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 732

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 26/193 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A Y    K        K+  L  I+++A  N    
Sbjct: 508 ELSASDEEAYREAVRAGNFMAMRRAA-YLRPGK------SAKLGRLREIVQEAGENGRKT 560

Query: 72  IVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCG 120
           +V  HF   L           R+           +    + ++     P +L A   + G
Sbjct: 561 VVFSHFRDVLGVVEEALAADTRVFGPLTGSVPAGRRQRLVDDFAGAPGPAVLLAQIQAAG 620

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   +++V            Q + R       + G  R V V+ L+A   +DE +
Sbjct: 621 VGLNLQ-AASVVVLCEPQIKPTLEHQAVAR-----AHRMGQVRPVRVHRLLATGGVDERL 674

Query: 181 LQRLRTKSTIQDL 193
           ++ L  K+ + D 
Sbjct: 675 VRMLEDKTRLFDA 687


>gi|224089945|ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222854852|gb|EEE92399.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 799

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRTL--- 94
            +     +     K+ AL  ++  +     A   +V   F   L  L++   +       
Sbjct: 613 DNANTSSRTTTSSKVSALIKLLIASRVENPARKSVVFSQFQKMLVLLEEPLKEAGFKILR 672

Query: 95  -------DKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   K    I+++       P +L A   + G G+NL    + +     WW+    
Sbjct: 673 LDGSMNAKKRAQVIKQFGVPGPDGPTVLLASLKASGAGINLAV-ASRVYLLEPWWNPAVE 731

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +Q ++R+      + G +  V V  LIAQ++I+E +L+    K  +   
Sbjct: 732 EQAMDRV-----HRIGQEEDVTVVRLIAQSSIEERILEMQERKKKLAKE 775


>gi|294659674|ref|XP_462077.2| DEHA2G12496p [Debaryomyces hansenii CBS767]
 gi|199434146|emb|CAG90563.2| DEHA2G12496p [Debaryomyces hansenii]
          Length = 1405

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  LE ++ +       +++       L  L           +    G    +   
Sbjct: 666 SSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYLSIKGYQFQRLDGGIPSSQRRI 725

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N              + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 726 SIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMAR-----AH 779

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 780 RIGQKNHVSVYRFVSKDTVEEEILERARKKMILEYAIIS 818


>gi|116207742|ref|XP_001229680.1| hypothetical protein CHGG_03164 [Chaetomium globosum CBS 148.51]
 gi|88183761|gb|EAQ91229.1| hypothetical protein CHGG_03164 [Chaetomium globosum CBS 148.51]
          Length = 1852

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    ++    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  
Sbjct: 1661 RLDGSVEANRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDL 1719

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R       + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1720 QAMDR-----AHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVVN 1765


>gi|255724370|ref|XP_002547114.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
 gi|240135005|gb|EER34559.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
          Length = 1680

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYC-----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH----WKEVH 52
            K Y +  R         +   E +   N+ ++ ++  ++ N    Y+E +H      E  
Sbjct: 1035 KLYQQMLRYNKLYTGDPENGAEPLTIKNANNQIMQLKKICNHPFVYEEVEHFINPSIETD 1094

Query: 53   DE------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL- 94
            D+      K + L+ ++ K  A    +++ +          D  R   L+     G T  
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLMFFQMTQIMNIMEDFLRFRGLKYMRLDGGTKA 1154

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1155 DDRTELLKLFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHAKLEIDGKVIQAGK 1255


>gi|301107330|ref|XP_002902747.1| DNA repair protein RAD5, SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin, putative
            [Phytophthora infestans T30-4]
 gi|262097865|gb|EEY55917.1| DNA repair protein RAD5, SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin, putative
            [Phytophthora infestans T30-4]
          Length = 1036

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 28/179 (15%)

Query: 44   EEKHWKEVHDEKIKAL-----------EVIIEKANAAPIIVAYHFNSDLARLQK------ 86
            ++     +   K++ L           E          ++V   + S L  + +      
Sbjct: 845  DDDDGTGLESTKLQQLLRDVQAIKLENENADSPDQKRKVVVFSQWTSMLGMVSQLLTRHG 904

Query: 87   ----AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                +F  G   +     + ++  +  + +L     + G GLNL    ++++    WW+ 
Sbjct: 905  FSHCSFNGGLNQEARERVLTKFAKDPDVEVLVISLKAGGVGLNLTC-ASVVILLDPWWNP 963

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +Q ++R+      + G  + V V   +  NT+++++LQ  + K  +   +L   K 
Sbjct: 964  GVEEQAVDRV-----HRLGQTQDVIVKRYVVNNTVEDMILQLQQRKEKLAKHVLVVAKA 1017


>gi|134055454|emb|CAK43969.1| unnamed protein product [Aspergillus niger]
          Length = 1163

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 434 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 493

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 494 EHLV--YNAGKMTILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 551

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+   +  +      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 552 AHEDRIAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR 610

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 611 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|115389802|ref|XP_001212406.1| chromatin remodelling complex ATPase chain ISW1 [Aspergillus
           terreus NIH2624]
 gi|114194802|gb|EAU36502.1| chromatin remodelling complex ATPase chain ISW1 [Aspergillus
           terreus NIH2624]
          Length = 1119

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 429 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 488

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 489 EHLV--YNAGKMVILDKLLSRMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 546

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N       +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 547 AHEDRIAAIDDYNRPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 605

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 606 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 651


>gi|115690971|ref|XP_001203541.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115733996|ref|XP_001199700.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 25/165 (15%)

Query: 43  DEEKHWKEVHDEKIKALEV--IIEKANAA--PIIVAYHFNSDLARLQK----------AF 88
           D E+ W      K+ AL    + E+A       IV   F S L  L+K            
Sbjct: 31  DTEREWH--SSAKVDALMECLLTERAADKTTKSIVVSQFTSFLDLLKKPLTEKGFKFCRL 88

Query: 89  PQGRTLDKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +       I+E+  N+   P +      + G GLNL    + L      W+    +
Sbjct: 89  DGSMSRIARTAAIREFSSNDPDSPQIFLLSLKAGGVGLNLT-AASRLYLLDPAWNPACEE 147

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q  +R       + G  + V +   + +++++E +L+   TK  +
Sbjct: 148 QCFDRC-----HRLGQTKDVTITKFLVRDSVEEAMLELQETKRQL 187


>gi|308498978|ref|XP_003111675.1| CRE-SSL-1 protein [Caenorhabditis remanei]
 gi|308239584|gb|EFO83536.1| CRE-SSL-1 protein [Caenorhabditis remanei]
          Length = 1986

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQ 102
            K++ L +++ +        ++    +  L  LQ              G T +++    ++
Sbjct: 1254 KLQTLALLLRQLYIYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMME 1313

Query: 103  EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N   K+        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 1314 RFNADSKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 1367

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1368 TRNVSIYRLISERTIEENILKKATQKRRLGELAID 1402


>gi|302839537|ref|XP_002951325.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
 gi|300263300|gb|EFJ47501.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
          Length = 192

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAH 115
                ++       L  L++             G T  +    + Q +N + KI +    
Sbjct: 52  GGHRALIFTQMAKMLDVLEEFLNLHGHTYMRLDGSTRPEQRQVLMQRFNTDPKIFVFILS 111

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQ 173
             S G G+NL  G + ++F+   W+     Q  +R       + G  R   V +Y L+++
Sbjct: 112 TRSGGVGINLT-GADTVIFYDSDWNPAMDAQAQDRC-----HRIGQTREVCVHIYRLVSE 165

Query: 174 NTIDELVLQRLRTKSTI 190
           NTI+E +L++   K  +
Sbjct: 166 NTIEENILRKSDQKRQL 182


>gi|239929154|ref|ZP_04686107.1| bifunctional protein [Streptomyces ghanaensis ATCC 14672]
          Length = 722

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 26/193 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A Y    K        K+  L  I+++A  N    
Sbjct: 498 ELSASDEEAYREAVRAGNFMAMRRAA-YLRPGK------SAKLGRLREIVQEAGENGRKT 550

Query: 72  IVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCG 120
           +V  HF   L           R+           +    + ++     P +L A   + G
Sbjct: 551 VVFSHFRDVLGVVEEALAADTRVFGPLTGSVPAGRRQRLVDDFAGAPGPAVLLAQIQAAG 610

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   +++V            Q + R       + G  R V V+ L+A   +DE +
Sbjct: 611 VGLNLQ-AASVVVLCEPQIKPTLEHQAVAR-----AHRMGQVRPVRVHRLLATGGVDERL 664

Query: 181 LQRLRTKSTIQDL 193
           ++ L  K+ + D 
Sbjct: 665 VRMLEDKTRLFDA 677


>gi|323453618|gb|EGB09489.1| hypothetical protein AURANDRAFT_71326 [Aureococcus anophagefferens]
          Length = 1707

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LL 112
           KA    +++     + +  L+  F                D+    +  +N+   P  + 
Sbjct: 721 KAAGHRVLLFSQMTALMDLLEDFFALRDYDYLRLDGSTAADERERRMARFNDPSSPAFVF 780

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + +V F   W+     Q        R  + G K  V V+ LI+
Sbjct: 781 LLSTRAGGLGLNL-ASADTVVIFDSDWNPMMDAQA-----QDRAHRIGQKNDVRVFRLIS 834

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            + ++E +LQR   K  + +L++ A K
Sbjct: 835 TSPVEERILQRATDKLNMNNLIVEAGK 861


>gi|221488861|gb|EEE27075.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 1168

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDP 98
               KI+ +  ++ +        ++   + + L  ++           K    G T  +D 
Sbjct: 987  DSAKIRKMIELVSEIKKKGEKALIFSQYTTYLDVVEESLTTFCGDIGKCRLDGSTAVEDR 1046

Query: 99   CT-IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++     + +      + G GLNL      ++     W+ +      +R    R 
Sbjct: 1047 QALVDDFSTNPDLTIFLLSTKAGGQGLNLT-AARTVILMDQDWNPQ-----NDRQAEDRV 1100

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G  + V +Y L  + T++E +L+  + K  +
Sbjct: 1101 HRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDL 1134


>gi|218195896|gb|EEC78323.1| hypothetical protein OsI_18057 [Oryza sativa Indica Group]
          Length = 987

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------P 89
            D E    +    K+  +  +++   +    +++       L  +Q+A            
Sbjct: 625 DDVELQVGQDVSCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRID 684

Query: 90  QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + +    ++++ EG   P+        G GL L     ++V     W+     Q +
Sbjct: 685 GTTKISERERIVKDFQEGPGAPIFLLTTQVGGLGLTLTKAARVIV-VDPAWNPSTDNQSV 743

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + V VY L+   TI+E + +    K  +
Sbjct: 744 DR-----AYRIGQMKDVIVYRLMTSGTIEEKIYKLQVFKGAL 780


>gi|209882325|ref|XP_002142599.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209558205|gb|EEA08250.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1866

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 24/160 (15%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPCT 100
            K+  L+ ++ +       +++       L  + +                G+ L K    
Sbjct: 865  KLCLLDKLLSRLKEKGNRVLIFSQMVRMLNIISEFLILRGFRHQRLDGTMGKELRK--KA 922

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N              + G G+NL    + ++ +   W+ +   Q   R       +
Sbjct: 923  MDHFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQNDLQAEAR-----AHR 976

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G  + V +Y L+ +++I+E +L+R +TK  +  L++  L
Sbjct: 977  IGQTKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGL 1016


>gi|123424079|ref|XP_001306506.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121888084|gb|EAX93576.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1366

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN 105
           I  L   +++ N   +++   +   L  L+              G     D  T I  + 
Sbjct: 579 IDKLLPKLKQKNEK-VLIFSQWTHILDILEDYLRYISFNYERLDGSVKPSDRQTAIDRFK 637

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +     +      + G G+NL    + ++ F   W+ +   Q   R       + G  + 
Sbjct: 638 DNANSFVFLISTKAGGVGINLTT-ASTVILFDSDWNPQNDLQAEARC-----HRIGQTKE 691

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V VY L+ +NT +  +++    K  ++ ++ + L
Sbjct: 692 VKVYRLVTRNTYESKMVEVSCKKMFLEHVIFDGL 725


>gi|157875048|ref|XP_001685931.1| DNA-dependent ATPase; transcription activator [Leishmania major
           strain Friedlin]
 gi|68129004|emb|CAJ06440.1| putative DNA-dependent ATPase [Leishmania major strain Friedlin]
          Length = 1103

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 41/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFN-----SASKTV---KCLQLANGAVYYDEEKH-WKEVHDEKI 56
           K QRE Y ++  ++ E  N      AS T       ++ N     D  +     V DEK+
Sbjct: 407 KKQREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKL 466

Query: 57  -----------KALEVIIEKANAA-PIIVAYHFNSDLARLQ---------KAFPQGRT-- 93
                      K L  +         +++   F S L  L+              G T  
Sbjct: 467 VRTSGKMVILDKLLHRLRADVQGRHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSG 526

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            D+D   +  +N       +      + G G+NLQ   N ++ +   W+ +   Q     
Sbjct: 527 YDRDSQ-MASFNSPSSDYFIFLLSTRAGGLGINLQ-AANHVILYDSDWNPQMDLQA---- 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G KR+V VY  +   T++E + +R   K  +  +++ 
Sbjct: 581 -QDRAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQ 624


>gi|83764570|dbj|BAE54714.1| unnamed protein product [Aspergillus oryzae]
          Length = 1113

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 423 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 483 EHLV--YNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 541 AHEDRIAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 600 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 645


>gi|312219184|emb|CBX99128.1| similar to SNF2 family helicase/ATPase PasG [Leptosphaeria
           maculans]
          Length = 907

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 21/143 (14%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC-TIQEWNEGK-----IPLL 112
              +++   F + L  L         + A   G     D    I  +N+         + 
Sbjct: 674 GHKVLIFSQFTTTLDLLGQYLDLRSWKYARIDGSVAQSDRQEQILAFNKPNKSKDATDIF 733

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ ++  Q ++R       + G  R V VY    
Sbjct: 734 ILSTRAGGQGINL-AAADTVILFDSDWNPQQDLQAMDR-----AHRIGQTRNVIVYRFAT 787

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +NT+++ +L+    K  ++ L++
Sbjct: 788 RNTVEQKLLESAEGKRRLEKLVI 810


>gi|296421483|ref|XP_002840294.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636509|emb|CAZ84485.1| unnamed protein product [Tuber melanosporum]
          Length = 1154

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE-KANAAPIIVAYHFNSDLARLQKAF 88
            K LQ+ + A+  ++E  W  +   K++AL +++IE +     +++   F   L  L+   
Sbjct: 942  KILQM-SHAILGEDE--W--MASGKVEALSKLLIEMREKGDRVLIFSQFTQVLDLLELVM 996

Query: 89   ---------PQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       G T       + +    E  I        + G G+NL    N ++ F  
Sbjct: 997  TTHGFGFLRIDGSTPVDMRQDMIDQYHEEEDIMTFLLSTKAGGFGINL-ACANKVIIFDS 1055

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             ++  +  Q  +R       + G  R V V  L+ + TI+E +L    TK  +   +
Sbjct: 1056 SFNPHDDAQASDR-----AHRVGQTREVEVIRLVTKGTIEEQILALANTKLALDQSI 1107


>gi|309366266|emb|CAP21787.2| CBR-SSL-1 protein [Caenorhabditis briggsae AF16]
          Length = 1964

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +++    ++ +N   K+        S G G+NL  G + ++F+   W+     Q  +R  
Sbjct: 1329 VEQRQAMMERFNADSKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC- 1386

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1387 ----HRIGQTRNVSIYRLISERTIEENILKKATQKRRLGELAID 1426


>gi|154312352|ref|XP_001555504.1| hypothetical protein BC1G_06209 [Botryotinia fuckeliana B05.10]
 gi|150850172|gb|EDN25365.1| hypothetical protein BC1G_06209 [Botryotinia fuckeliana B05.10]
          Length = 1096

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ ++ +++  K      ++       L  L++   +          G T  KD  T
Sbjct: 663 SGKMQVVKALLQMWKGYGHKTLLFSQGVQMLDILEEFVKKLGGFNYLRMDGGTAVKDRQT 722

Query: 101 I--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  Q  N+ ++ +        G G+NL  G N ++ F   W+     Q  ER       +
Sbjct: 723 LVDQFNNDPEMHVFLLTTKVGGLGVNLT-GANRVIIFDPDWNPSTDVQARERAW-----R 776

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 777 LGQKKEVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 819


>gi|50285639|ref|XP_445248.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524552|emb|CAG58154.1| unnamed protein product [Candida glabrata]
          Length = 1115

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEKH 47
            Q++ Y  +  ++I+A N+ S             +QL    N    +D            
Sbjct: 415 MQKKWYRQILEKDIDAVNADSGSKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 474

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
               + EK+K L+ ++ K     + +++    +  L  L+              G T  +
Sbjct: 475 HLVYNSEKLKVLDKLLRKLKEAGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHE 534

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+N       L      + G G+NL    +++V F   W+ +   Q ++R   
Sbjct: 535 DRIEAIDEYNAPDSKKFLFLLTTRAGGLGINLTT-ADVVVLFDSDWNPQADLQAMDR--- 590

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+  +  N+++E +L+R   K  +  L++ 
Sbjct: 591 --AHRIGQKKQVRVFRFVTDNSVEEKILERATQKLRLDQLVIQ 631


>gi|268571107|ref|XP_002640935.1| C. briggsae CBR-SSL-1 protein [Caenorhabditis briggsae]
          Length = 1874

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +++    ++ +N   K+        S G G+NL  G + ++F+   W+     Q  +R  
Sbjct: 1268 VEQRQAMMERFNADSKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC- 1325

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1326 ----HRIGQTRNVSIYRLISERTIEENILKKATQKRRLGELAID 1365


>gi|46121269|ref|XP_385189.1| hypothetical protein FG05013.1 [Gibberella zeae PH-1]
          Length = 874

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               +++   F + L  L+                    D     I ++N + +  +   
Sbjct: 652 GGHKVLIFSQFTTQLDILEDYCAELRGWKVCRIDGSVAQDSRRTQIADFNSDPEYKIFLL 711

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   ++ ++  Q  +R       + G  R V V+ L  ++
Sbjct: 712 STRAGGQGINL-ASADTVILFDSDFNPQQDLQAQDRC-----HRIGQTRPVVVFRLATKD 765

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T++E +L     K  ++ L++
Sbjct: 766 TVEESLLNSADAKRRLEKLVI 786


>gi|238501732|ref|XP_002382100.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220692337|gb|EED48684.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1158

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEV-HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQ----------KA 87
            +Y +      +V    KI+ L  I+  +++    IV   F S L +++            
Sbjct: 904  IYLNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFAR 963

Query: 88   FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            +  G   D    ++ +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 964  YDGGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1022

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 1023 AIDRV-----HRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1068


>gi|189529831|ref|XP_688979.3| PREDICTED: DNA repair and recombination protein RAD54B [Danio rerio]
          Length = 1174

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 31/205 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYY---DEEKHWKEVHDEKIK 57
             Y    +EL+     E      S + + K L L +   A+ +    +       H + + 
Sbjct: 880  MYEGEVKELF---PEEYSTGAFSTADSGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLD 936

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
             L+ + ++       + Y +     RL    P G+        +  +N       LL   
Sbjct: 937  LLQDVCDQ-------IGYKW----CRLDGQTPVGQ----RQKIVDSFNSPHSSSFLLLLS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL  G + LV + + W+     Q + R+      + G K+ V +Y  +   +
Sbjct: 982  SKAGGVGLNL-IGASHLVLYDIDWNPANDIQAMARVW-----RDGQKKTVHIYRFLTTGS 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALKK 200
            I+E + QR  +K  +   +++  KK
Sbjct: 1036 IEEKIYQRQVSKQGLSGTVVDLTKK 1060


>gi|295670740|ref|XP_002795917.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb01]
 gi|226284050|gb|EEH39616.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb01]
          Length = 1906

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K+Y++ Q+    + +  +I     A K      L       D         + ++     
Sbjct: 1628 KRYNEIQKS--LEAKNSHIRDVAHAPKLSALRDL-----LVDCGIGVDPSTEGELDTGVN 1680

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                       K    + ++N + 
Sbjct: 1681 YVSP---HRALVFCQMKEMLDIVQNDVFKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDP 1737

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1738 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1791

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1792 YRLITRGTLEEKILNLQRFKIDVASTVVN 1820


>gi|291548670|emb|CBL24932.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus torques
           L2-14]
          Length = 451

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 26/184 (14%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +   NS +K +   QL              + H EK++ L  ++E      +I+ Y+F 
Sbjct: 284 ELVGDNSLTKMLYARQLCG------------QWHKEKLEGLRDLVESTEDR-LIIFYNFT 330

Query: 79  SDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           ++L  +QK           ++     +  +++    + F    +   G N Q   N +++
Sbjct: 331 AELEAMQKKLADLNRPYSVVNGSKKDLTAYDQADDSITFIQYQAGAMGGNYQK-ANKIIY 389

Query: 135 FSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           F+L       +  +Q  +RI      + G  +  F YYL+ + T++E  L  L+    + 
Sbjct: 390 FTLPLGKGSCDMWEQSKKRI-----HRIGQAKPCFYYYLLVKGTVEERNLAALKEGKELT 444

Query: 192 DLLL 195
           D L 
Sbjct: 445 DELF 448


>gi|145602348|ref|XP_359788.2| hypothetical protein MGG_04989 [Magnaporthe oryzae 70-15]
 gi|145010771|gb|EDJ95427.1| hypothetical protein MGG_04989 [Magnaporthe oryzae 70-15]
          Length = 1887

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                G   +K    + ++N +    +L    +  G GLNL  G + ++F    W+ +   
Sbjct: 1695 RLDGGVEANKRQDIVNKFNSDPSFDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQRDL 1753

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R       + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1754 QAMDR-----AHRIGQKKVVNVYRLITRATLEEKILSLQRFKIDVASTVVN 1799


>gi|312371646|gb|EFR19778.1| hypothetical protein AND_21824 [Anopheles darlingi]
          Length = 2134

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVII----------EKANAAPIIVAYHFNSDLARL-- 84
            NGA   D E      H  K+  L+ ++             N    ++     + L  L  
Sbjct: 1840 NGASMDDIE------HSAKLPVLKQLLLDCGIGTNEDVSVNQHRALIFCQLKAMLDILEN 1893

Query: 85   ---QKAFPQGRTLDKDPCT--------IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNIL 132
               +K  P    L  D           + ++N +  I +L       G GLNL  G + +
Sbjct: 1894 DLLKKHLPAVSYLRLDGSVPPSTRHHIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GADTV 1952

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +F    W+  +  Q ++R       + G K+ V VY LI + +++E ++   + K    +
Sbjct: 1953 IFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLQTAN 2007

Query: 193  LLLN 196
             +++
Sbjct: 2008 TVVS 2011


>gi|297849474|ref|XP_002892618.1| hypothetical protein ARALYDRAFT_471244 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338460|gb|EFH68877.1| hypothetical protein ARALYDRAFT_471244 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1227

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          + F    T+      ++++N   ++ ++    
Sbjct: 1072 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVRDFNTLPEVSVMIMSL 1131

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+      ++   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1132 KAASLGLNM-VAACHVIMLDLWWNPTTEDQAIDR-----AHRIGQTRPVKVVRFTVKDTV 1185

Query: 177  DELVLQRLRTKSTI 190
            ++ +L   + K  +
Sbjct: 1186 EDRILALQQRKRMM 1199


>gi|307149973|ref|YP_003885357.1| SNF2-like protein [Cyanothece sp. PCC 7822]
 gi|306980201|gb|ADN12082.1| SNF2-related protein [Cyanothece sp. PCC 7822]
          Length = 1047

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +    I  +       P+      + G GLNL    N +     WW+     Q  
Sbjct: 918  ATPRQQRQEMIDRFQNDPAGPPIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQAT 976

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G K+ V V+  I   T++E +   + +K  + +  ++A
Sbjct: 977  DR-----AFRIGQKQNVQVHKFICTGTLEEKINDMIESKKQLAEQTVDA 1020


>gi|71004894|ref|XP_757113.1| hypothetical protein UM00966.1 [Ustilago maydis 521]
 gi|46096494|gb|EAK81727.1| hypothetical protein UM00966.1 [Ustilago maydis 521]
          Length = 1124

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 25/151 (16%)

Query: 66  ANAAPIIVAY------HFN--------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIP 110
           AN   +++         F          +  RL    PQ R        + ++N +  I 
Sbjct: 700 ANGDKVLLFSTNLRLLQFIEFFLSREGHNFLRLDGTTPQPR----RQQLVNQFNRDASIF 755

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL    N +V F   W+     Q ++R       + G  R V+VY L
Sbjct: 756 VFLISTTAGGTGLNLT-SANRVVVFDPHWNPSHDLQAMDR-----AYRFGQSRDVYVYRL 809

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I   +++E++  R   K    ++  NA K+ 
Sbjct: 810 IGAGSLEEVIYGRQIYKQQQMEIGYNATKER 840


>gi|254582697|ref|XP_002499080.1| ZYRO0E03190p [Zygosaccharomyces rouxii]
 gi|238942654|emb|CAR30825.1| ZYRO0E03190p [Zygosaccharomyces rouxii]
          Length = 1052

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 29/193 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVH------DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
             ++ N     D ++  KE          K++ ++ ++   +      ++       L  
Sbjct: 604 LRKICNHPDLLDRDERSKEASYGDPKRSGKMQVVKQLLLLWRKEGHKALLFTQSRQMLDI 663

Query: 84  LQK---------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
           LQ+                     T+      + E+N G   +        G G+NL  G
Sbjct: 664 LQEFIAFKDQELTGLKFLRMDGTTTISIRQSLVDEFNRGDYNVFLLTTRVGGIGVNLT-G 722

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++ F   W+     Q  ER       + G KR V +Y L+   +I+E +  R   K 
Sbjct: 723 ANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVTGSIEEKIYHRQIFKQ 777

Query: 189 TIQDLLLNALKKE 201
            + + +L+  K++
Sbjct: 778 FLTNKILSDPKQK 790


>gi|221117281|ref|XP_002154909.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 765

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQG----------RTLDKDP 98
              K+  L+ I+    +N   +++       +  LQ   + +G            LD+  
Sbjct: 538 TSGKMLLLDKILPALKSNGHKVLIFSQMTQMMDILQDYCYLRGYGYCRIDGTMSVLDRQE 597

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  ++ ++ +      + G GLNL    +  + +   W+ +   Q  +R       +
Sbjct: 598 NIKKFTDDKELFIFLLSTRAGGLGLNLMM-ADTCIIYDSDWNPQVDLQAQDRC-----HR 651

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V +Y  +  NTID+ +++R   K  ++ +++
Sbjct: 652 IGQTKPVVIYRFVTANTIDQKIIERAACKRKLEKMVI 688


>gi|123493351|ref|XP_001326267.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121909179|gb|EAY14044.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1325

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
               +++       L  +Q+                ++++   +I+ +       +    
Sbjct: 523 GGHKVLIFSQMTKVLDIIQRFLDWRNFHYERLDGSVSVERRSESIERFTTFDDSFVFLLS 582

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ +   W+ +   Q + R       + G  + V VY LI +N+
Sbjct: 583 TRAGGQGINLTV-ADTVIIYDSDWNPQNDIQAMARC-----HRIGQDKEVKVYRLITKNS 636

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
            +E + +R   K  +  ++ + 
Sbjct: 637 YEEEMFERASMKLGLDKVITDG 658


>gi|156043545|ref|XP_001588329.1| hypothetical protein SS1G_10776 [Sclerotinia sclerotiorum 1980]
 gi|154695163|gb|EDN94901.1| hypothetical protein SS1G_10776 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1086

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 427 DMQVKWYKKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 486

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++ +     + +++    +  L  L+               G 
Sbjct: 487 EHLI--FNAGKMVMLDKLLTRMKKAGSRVLIFSQMSRLLDILEDYCVFREFKYCRIDGGT 544

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I ++N+   +  +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 545 AHEDRIQAIDDYNKPGSEKFVFLLTTRAGGLGINLT-SADIVVLYDSDWNPQADLQAMDR 603

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  + +N I+E VL+R   K  +  L++ 
Sbjct: 604 -----AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVIQ 644


>gi|74694070|sp|Q759G7|SWR1_ASHGO RecName: Full=Helicase SWR1
          Length = 1486

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K+++L V++ +        ++       L  L++             G 
Sbjct: 1207 PDKSLLQYDCGKLQSLAVLLRRLKEEGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGA 1266

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + +I +      S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1267 TKIEDRQILTERFNTDPRITVFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1325

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y   +++TI+  +L++   K  + ++++ 
Sbjct: 1326 C-----HRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQ 1366


>gi|237837185|ref|XP_002367890.1| SNF2 family helicase, putative [Toxoplasma gondii ME49]
 gi|211965554|gb|EEB00750.1| SNF2 family helicase, putative [Toxoplasma gondii ME49]
 gi|221509350|gb|EEE34919.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1167

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDP 98
               KI+ +  ++ +        ++   + + L  ++           K    G T  +D 
Sbjct: 986  DSAKIRKMIELVSEIKKKGEKALIFSQYTTYLDVVEESLTTFCGDIGKCRLDGSTAVEDR 1045

Query: 99   CT-IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++     + +      + G GLNL      ++     W+ +      +R    R 
Sbjct: 1046 QALVDDFSTNPDLTIFLLSTKAGGQGLNLT-AARTVILMDQDWNPQ-----NDRQAEDRV 1099

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G  + V +Y L  + T++E +L+  + K  +
Sbjct: 1100 HRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDL 1133


>gi|119499890|ref|XP_001266702.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL
           181]
 gi|119414867|gb|EAW24805.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL
           181]
          Length = 1141

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 454 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 513

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L         +     G T
Sbjct: 514 EHLV--YNSGKMVILDKLLARMQQQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTT 571

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 572 AHEDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 630

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 631 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 676


>gi|294953115|ref|XP_002787602.1| chromodomain helicase dna binding protein, putative [Perkinsus
            marinus ATCC 50983]
 gi|239902626|gb|EER19398.1| chromodomain helicase dna binding protein, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1191

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 46/199 (23%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------ 94
            D           K+  LE +I+K  A    ++V   F   L  +                
Sbjct: 816  DAINQLLVSASGKMVFLEKLIDKLLAEGEKVLVFSQFTMQLDIIDDYLRARGVRFERLDG 875

Query: 95   ----DKDPCTIQEWNEGKIP----------------------------LLFAHPASCGHG 122
                      +  +N                                 +      + G G
Sbjct: 876  NVSAGDRQEAVDRFNRSTPSPSPSPSVSPSPEDEANDGVVGVDDFSSMVFLLSTKAGGVG 935

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++ V F   W+ +   Q + R       + G  + V VY L+ +NT +E +  
Sbjct: 936  LNL-CAASVAVIFDSDWNPQNDLQAMARC-----HRIGQVKNVQVYRLLTRNTYEERMFA 989

Query: 183  RLRTKSTIQDLLLNALKKE 201
                K  ++  +++ L+  
Sbjct: 990  VASHKLALERAVMSGLEAR 1008


>gi|254571325|ref|XP_002492772.1| Putative ATPase containing the DEAD/H helicase-related sequence
           motif [Pichia pastoris GS115]
 gi|238032570|emb|CAY70593.1| Putative ATPase containing the DEAD/H helicase-related sequence
           motif [Pichia pastoris GS115]
 gi|328353220|emb|CCA39618.1| hypothetical protein PP7435_Chr3-0661 [Pichia pastoris CBS 7435]
          Length = 805

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 25/170 (14%)

Query: 53  DEKIKALEVIIEKA---------NAAPIIVAYHFNSDLARLQ----------KAFPQGRT 93
             K++ L  ++ +              +++   F   +  ++                 +
Sbjct: 555 SSKMQMLAQLLPRLLDSKKSPDGKKHKVLIFCQFTKMMDLVEMWCQEENYSTYRIDGTTS 614

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    ++ +    I +      S G G+NL    + ++ F   W+ +   Q I+R+  
Sbjct: 615 QEERAGMVKGFATKDIDIFLLSTRSGGLGINLT-ASDTVILFDSDWNPQVDLQAIDRV-- 671

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               + G  + V +Y L   NTI++++L R  +K  ++ L+++  K  T+
Sbjct: 672 ---HRIGQTQPVIIYRLCNINTIEQVLLARADSKRRLERLVISMGKFSTL 718


>gi|47213833|emb|CAG00637.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 4522

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 98   PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +N   +I        S G G+NL  G + ++F+   W+     Q  +R      
Sbjct: 2942 QALMERFNADQRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC----- 2995

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2996 HRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 3036


>gi|145255017|ref|XP_001398836.1| TBP associated factor (Mot1) [Aspergillus niger CBS 513.88]
 gi|134084423|emb|CAK97415.1| unnamed protein product [Aspergillus niger]
          Length = 1895

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            L  GA Y    +        ++K +  I++      ++ +  +             G   
Sbjct: 1667 LGTGASYVSPHRALVF---CQMKEMLDIVQSEVLRKLLPSVQYL--------RLDGGVEA 1715

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    +  +N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R   
Sbjct: 1716 TKRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR--- 1771

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1772 --AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1812


>gi|195395955|ref|XP_002056599.1| GJ10137 [Drosophila virilis]
 gi|194143308|gb|EDW59711.1| GJ10137 [Drosophila virilis]
          Length = 1061

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
               K+  +  I++     +    IV   + S L  L     + R           +    
Sbjct: 890  PSSKMLKVLEILKTNVLKSKDKAIVVSQWTSVLDILGDLLEKERLQTLSLNGAIPVKNRQ 949

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+N+ + P  +L     + G GLNL  G N L+ F L W+ +   Q  +RI     
Sbjct: 950  DIVNEFNDERNPKRILLLSLTAGGVGLNL-IGANHLILFDLHWNPQLEAQAQDRI----- 1003

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G K+ V +Y ++  +T+++ +      K  + D +L  
Sbjct: 1004 YRVGQKKDVIIYKIVCLDTVEQRIKALQDRKLELADGVLTG 1044


>gi|164659175|ref|XP_001730712.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
 gi|159104609|gb|EDP43498.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
          Length = 838

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 52  HDEKIKALEVIIEKANAAP-----IIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              KI+AL   +      P      +V   F + L  +     +            T D 
Sbjct: 664 SSTKIEALVEELTHLREQPDRTIKSLVFSQFVNFLDLIAFRLQRAGFRICRLEGNMTPDA 723

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              TI+ +     I +      + G  LNL    + +     WW+     Q ++RI    
Sbjct: 724 RDRTIRLFMENPGITVFLVSLKAGGVALNLTE-ASRVYLMDPWWNPAVEVQAMDRI---- 778

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R + V  +I +N+I+  +++    KS + D  L
Sbjct: 779 -HRLGQHRPIVVKRMIIENSIESRIIELQNKKSAMVDAAL 817


>gi|156097857|ref|XP_001614961.1| helicase [Plasmodium vivax SaI-1]
 gi|148803835|gb|EDL45234.1| helicase, putative [Plasmodium vivax]
          Length = 1795

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                +   K+ ALE ++ K        ++   F   L  L+                  +
Sbjct: 1392 KDITLGSGKLFALEKLLNKCKREGNKCLLFTQFIKMLDILEVFLNHLNYTFIRLDGSTKV 1451

Query: 95   DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    + ++N  K I L  +   S   G+NL    N+++F+   W+    +Q ++R   
Sbjct: 1452 EQRQKIVTKFNNDKSIFLFISSTRSGSIGINLT-AANVVIFYDTDWNPSIDKQAMDRC-- 1508

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  + V V+  + + T++E + ++   K  +  + ++
Sbjct: 1509 ---HRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDTICIS 1548


>gi|62088588|dbj|BAD92741.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 variant [Homo sapiens]
          Length = 870

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 207 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 264

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 265 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 323

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 324 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 370


>gi|145488703|ref|XP_001430355.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397452|emb|CAK62957.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1100

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 18/155 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQ 102
           K+  L  +I K  +    II+       L          ++      G T ++     ++
Sbjct: 770 KMNTLVSLIYKLKSQNHKIIIFTQMTKMLDLFEAVLSLSKISYLRLDGSTPVEMRQKIVE 829

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N+  I    +   S G GLNL  G + ++F+   W+    +Q  +R       + G  
Sbjct: 830 SFNQLNITCFISSTRSGGIGLNLT-GADTVIFYDTDWNPAMDKQAQDRC-----HRIGQV 883

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R V +Y LI  +TI+E +  +   K  + D ++ +
Sbjct: 884 RPVTIYRLITNSTIEENIFLKSLQKRQLDDFVMQS 918


>gi|189198415|ref|XP_001935545.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187981493|gb|EDU48119.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 916

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC-TIQEWNEGKI-----PLL 112
              +++   F + L  L           A   G     D    I  +N+         + 
Sbjct: 684 GHKVLIFSQFTTTLDLLGHYLDLRSWNYARIDGSVAQTDRQEQILAFNKPSTTKEAADIF 743

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ ++  Q ++R       + G  R V VY    
Sbjct: 744 ILSTRAGGQGINL-AAADTVILFDSDWNPQQDLQAMDR-----AHRIGQTRNVIVYRFAT 797

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +NT+++ +L+    K  ++ L++
Sbjct: 798 RNTVEQKLLESAEAKRRLEKLVI 820


>gi|270003081|gb|EEZ99528.1| hypothetical protein TcasGA2_TC000110 [Tribolium castaneum]
          Length = 863

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
           + E   A N A++ V   + + G +         E    KI+AL  +++   +     IV
Sbjct: 653 EEEPRVAANLANEGVGLKEASKGYLNPTNPVFMTERPSSKIRALINLLKNKISGEDKAIV 712

Query: 74  AYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGH 121
              + S L  +            +      + K    +  +N+      +L     + G 
Sbjct: 713 VSQWTSLLHLVAIHLENEGIPYASLDGSVVVQKRMPIVDNFNDPNSATKVLLLSLTAGGV 772

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N L    L W+ +   Q  +RI      + G K+ ++VY  +A  TI+E + 
Sbjct: 773 GLNL-VGANHLFLLDLHWNPQLENQAQDRI-----YRMGQKKDIYVYKFMALETIEERIK 826

Query: 182 QRLRTKSTIQDLLLNALKKET 202
                K  I + +L   K+ T
Sbjct: 827 ALQERKLEIANAMLTGSKQVT 847


>gi|145233919|ref|XP_001400332.1| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
 gi|134057271|emb|CAK37885.1| unnamed protein product [Aspergillus niger]
          Length = 1123

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + +   K+  L  ++++   N    +V   F   +  L+              GRT 
Sbjct: 933  KNNEWMDSGKVDKLCDLLKRFKENGDRALVFSQFTLVMDILEHVLENQHIGFVRLDGRTN 992

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 993  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1046

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1047 ENRAHRVGQTRDVEVIRLVTKGTIEEQIYALGQTKLALDQAV 1088


>gi|310789538|gb|EFQ25071.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1153

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWN-EGKIPLLFAH 115
               ++       L  LQ+   +   ++           K    I  +N +  I +    
Sbjct: 734 GHKTLLFSQTKIMLDILQEFIGKMEGMNYLRMDGEVAVEKRQALIDRFNHDPSIHVFLLT 793

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL  G   +V +   W+     Q  ER       + G  + V +Y L+   T
Sbjct: 794 TKTGGLGVNLT-GATRIVIYDPDWNPSTDLQARERAW-----RLGQTKPVAIYRLMTSGT 847

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           I+E +  R   K  + + +L   K+  
Sbjct: 848 IEEKIYHRQIFKQFMTNKVLKDPKQRA 874


>gi|194381160|dbj|BAG64148.1| unnamed protein product [Homo sapiens]
          Length = 863

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 200 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 257

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 258 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 316

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 317 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 363


>gi|297847386|ref|XP_002891574.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337416|gb|EFH67833.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 980

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 19/139 (13%)

Query: 65  KANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            +N  P+  I+   +   L  ++ +  +              + +D    +  N+  + +
Sbjct: 820 PSNQGPVKTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKV 879

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLN+      ++   LWW+     Q I+R       + G  R V V  + 
Sbjct: 880 MIMSLKAGNLGLNM-IAACHVILLDLWWNPTTEDQAIDR-----AHRIGQTRPVTVTRIT 933

Query: 172 AQNTIDELVLQRLRTKSTI 190
            ++T+++ +L     K  +
Sbjct: 934 IKDTVEDRILSLQEEKRKM 952


>gi|326429518|gb|EGD75088.1| Rad54b protein [Salpingoeca sp. ATCC 50818]
          Length = 1070

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 34/202 (16%)

Query: 7   FQRELYCDLQG----ENIEAFNSASKTVKCLQLANGAVYY------DEEKHWKEVHDEKI 56
           F R+L  +  G      ++     S   K +QL +  + +      +E         + +
Sbjct: 676 FVRDLMVEELGRPALSTLDDVEDVSLCGK-MQLLSHMLQHWRAHPANERVLIVSNSTKVL 734

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
             ++ + E+        AY F     RLQ   P      K    +  +N       +   
Sbjct: 735 SRVQALCEQ-------CAYPFL----RLQGNTPT----HKRLELVNRFNSRVRDDFVFLM 779

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+  G + L+ +   W+     Q + R+      + G KR V+VY  +   
Sbjct: 780 SSKAGGVGLNI-VGASRLILYDTDWNPANDLQAMARVW-----RDGQKRHVYVYRFLTTG 833

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+E + QR   K  +   +++
Sbjct: 834 TIEEKIYQRQVHKQGLSGSVVD 855


>gi|330935743|ref|XP_003305110.1| hypothetical protein PTT_17857 [Pyrenophora teres f. teres 0-1]
 gi|311318056|gb|EFQ86823.1| hypothetical protein PTT_17857 [Pyrenophora teres f. teres 0-1]
          Length = 2332

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++   +A     ++       L  L++             G 
Sbjct: 1360 PDKRLLQYDCGKLQRLATLLRDLQAGGHRALIFTQMTKVLDILEQFLNIHGYRYLRLDGS 1419

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+ L W+       +++
Sbjct: 1420 TKIEQRQILTDRFNTDPRILCFILSSRSGGLGINLT-GADSVIFYDLDWN-----PAMDK 1473

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1474 QCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1519


>gi|67538946|ref|XP_663247.1| hypothetical protein AN5643.2 [Aspergillus nidulans FGSC A4]
 gi|40743546|gb|EAA62736.1| hypothetical protein AN5643.2 [Aspergillus nidulans FGSC A4]
 gi|259484887|tpe|CBF81492.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
           AFUA_4G13460) [Aspergillus nidulans FGSC A4]
          Length = 1111

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 43/230 (18%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQL-------------ANGAVYYDEE 45
            Q + Y  +  ++I+A N A              +QL               G  Y ++ 
Sbjct: 431 MQVKWYQKILEKDIDAVNGAGGKKESKTRLLNIVMQLRKCCNHPYLFEGAEEGPPYTNDV 490

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL 94
                 +  K+  L+ ++   +A  + +++    +  L  L         Q     G T 
Sbjct: 491 HIIN--NSGKMVILDKLLARMQAQGSRVLIFSQMSRVLDILEDYCALRKYQYCRIDGTTA 548

Query: 95  DKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R 
Sbjct: 549 HEDRIAAIDEYNKPDSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR- 606

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G  + V VY  I ++ I+E VL+R   K  +  L++   + +
Sbjct: 607 ----AHRIGQTKQVVVYRFITESAIEERVLERAAQKLRLDQLVIQQGRAQ 652


>gi|320170477|gb|EFW47376.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1345

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K+  L  + E    +   +++       L  +Q+                T  +   
Sbjct: 632 ASVKLSFLTTLCENLKQDGHRVLIFSQSTRMLDLIQEVLTYQKYSLIRIDGSVTGHERQH 691

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N    I          G G+ L    + ++     W+     Q ++R       +
Sbjct: 692 RIDKFNTDDSIFGFLLTTQVGGVGITLT-SADRVIIVDPSWNPAIDTQAVDR-----AYR 745

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R V +Y LI   TI+E +  R   KS    ++++
Sbjct: 746 IGQTRNVVIYRLITCGTIEEKIYCRQVYKSDFSHVMID 783


>gi|297821893|ref|XP_002878829.1| PKL/SSL2 [Arabidopsis lyrata subsp. lyrata]
 gi|297324668|gb|EFH55088.1| PKL/SSL2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1399

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 31/189 (16%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQ- 85
            K   L    V   E+ H   ++ +    +  LE              Y F   L  L+ 
Sbjct: 595 GKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCS----------YKFQHMLDLLED 644

Query: 86  ----KAFPQGRTLDKDPCT-----IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
               K +   R   K         I  +N              + G G+NL    + ++ 
Sbjct: 645 YCSYKKWNYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVII 703

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+     Q + R       + G    V +Y LI + TI+E ++Q  + K  ++ L+
Sbjct: 704 YDSDWNPHADLQAMAR-----AHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLV 758

Query: 195 LNALKKETI 203
           +  LK + I
Sbjct: 759 VGKLKTQNI 767


>gi|320038286|gb|EFW20222.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 1905

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +QY + QR  Y   +  NI   + A K      L       D         + ++     
Sbjct: 1627 RQYQEVQR--YLANKNSNIRDISHAPKLTALRDL-----LIDCGIGVDPSAEGELNTAAS 1679

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        ++       L  +Q                       K    + ++N + 
Sbjct: 1680 YVSP---HRALIFCQMKEMLDIVQNDVLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDP 1736

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1737 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1790

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1791 YRLITRGTLEEKILNLQRFKIDVASTVVN 1819


>gi|170114883|ref|XP_001888637.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164636332|gb|EDR00628.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 163

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIPLLF 113
           +A     I+   F S L+ +  A  +  T             +     +   + +  ++ 
Sbjct: 12  RARGEKTIIFSSFVSLLSLIGDALAERHTGFTSYTGALSSAQRQMALKRISQDTQCQVIL 71

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N ++    WW+    +Q I R       + G  + V VY ++A+
Sbjct: 72  ISIKAGGTGLNIT-ACNHVIIMDPWWNPYVEEQAISR-----AHRIGQSKDVHVYRILAR 125

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           NTI+E +++    K    +  L+
Sbjct: 126 NTIEERIVEIQNKKRETIEAFLD 148


>gi|327351086|gb|EGE79943.1| DsDNA-dependent ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1011

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N      +        + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 720 KRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI- 777

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G KR   +Y L+ +  ++E + QR  TK  + D +++  K
Sbjct: 778 ----HRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKK 820


>gi|303316872|ref|XP_003068438.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240108119|gb|EER26293.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1905

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +QY + QR  Y   +  NI   + A K      L       D         + ++     
Sbjct: 1627 RQYQEVQR--YLANKNSNIRDISHAPKLTALRDL-----LIDCGIGVDPSAEGELNTAAS 1679

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        ++       L  +Q                       K    + ++N + 
Sbjct: 1680 YVSP---HRALIFCQMKEMLDIVQNDVLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDP 1736

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1737 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1790

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1791 YRLITRGTLEEKILNLQRFKIDVASTVVN 1819


>gi|239607133|gb|EEQ84120.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis ER-3]
          Length = 989

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N      +        + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 699 KRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI- 756

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G KR   +Y L+ +  ++E + QR  TK  + D +++  K
Sbjct: 757 ----HRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKK 799


>gi|261201037|ref|XP_002626919.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239593991|gb|EEQ76572.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 999

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N      +        + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 699 KRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI- 756

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G KR   +Y L+ +  ++E + QR  TK  + D +++  K
Sbjct: 757 ----HRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKK 799


>gi|323485276|ref|ZP_08090626.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
           WAL-14163]
 gi|323401454|gb|EGA93802.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
           WAL-14163]
          Length = 451

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 26/184 (14%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +   NS +K +   QL              + H EK++ L  ++E      +I+ Y+F 
Sbjct: 284 ELVGDNSLTKMLYARQLCG------------QWHKEKLEGLRDLVESTEDR-LIIFYNFT 330

Query: 79  SDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           ++L  +QK           ++     +  +++    + F    +   G N Q   N +++
Sbjct: 331 AELEAMQKKLADLNRPYSVVNGSKKDLTAYDQADDSITFIQYQAGAMGGNYQK-ANKVIY 389

Query: 135 FSLW---WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           F+L       +  +Q  +RI      + G  +  F YYL+ + T++E  L  L+    + 
Sbjct: 390 FTLPLGKGSCDIWEQSKKRI-----HRIGQAKPCFYYYLLVKGTVEEKNLAALKEGKELT 444

Query: 192 DLLL 195
           D L 
Sbjct: 445 DELF 448


>gi|330922513|ref|XP_003299868.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
 gi|311326280|gb|EFQ92036.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
          Length = 916

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC-TIQEWNEGKI-----PLL 112
              +++   F + L  L           A   G     D    I  +N+         + 
Sbjct: 684 GHKVLIFSQFTTTLDLLGHYLDLRSWNYARIDGSVAQTDRQEQILAFNKPSTTKEAADIF 743

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ ++  Q ++R       + G  R V VY    
Sbjct: 744 ILSTRAGGQGINL-AAADTVILFDSDWNPQQDLQAMDR-----AHRIGQTRNVIVYRFAT 797

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +NT+++ +L+    K  ++ L++
Sbjct: 798 RNTVEQKLLESAEAKRRLEKLVI 820


>gi|154280933|ref|XP_001541279.1| hypothetical protein HCAG_03376 [Ajellomyces capsulatus NAm1]
 gi|150411458|gb|EDN06846.1| hypothetical protein HCAG_03376 [Ajellomyces capsulatus NAm1]
          Length = 1552

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 782 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 841

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 842 LSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 895

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 896 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 926


>gi|226292087|gb|EEH47507.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1083

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP-----QGRTLD 95
            DE +    +   KI+ L  I++K +     IV   F S L +++           R   
Sbjct: 824 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKGANIGYARYDG 883

Query: 96  KDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E          K  +L     +   GLNL    + +V    +W+    +Q I+
Sbjct: 884 AMRNDMRENSLDRLRTSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAID 942

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      +      V VY L  +NT++E ++     K  + +  +  
Sbjct: 943 RV-----HRLNQTIDVKVYKLTIRNTVEERIVDLQEHKRELANATIEG 985


>gi|225559061|gb|EEH07344.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus G186AR]
          Length = 1142

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 438 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 497

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 498 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 555

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 556 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 614

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 615 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 668


>gi|95007492|emb|CAJ20716.1| SWI/SNF family transcriptional activator protein, putative
           [Toxoplasma gondii RH]
          Length = 1383

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 82/219 (37%), Gaps = 31/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDE---------EKHWKEV 51
           + Y     +    LQG          +  ++  +  N    +D           +H  E 
Sbjct: 709 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIE- 767

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-----DKDPC 99
           +  K++  + ++ +        ++       +  L+     + F   R       D+   
Sbjct: 768 NAGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDR 827

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N     IP+      + G G+NL    + ++ +   W+ +   Q ++R+      
Sbjct: 828 QIEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQVDLQAMDRV-----H 881

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K AV VY L+ ++TI++ +++R   K  +   ++ 
Sbjct: 882 RIGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQ 920


>gi|119496623|ref|XP_001265085.1| TBP associated factor (Mot1), putative [Neosartorya fischeri NRRL
            181]
 gi|119413247|gb|EAW23188.1| TBP associated factor (Mot1), putative [Neosartorya fischeri NRRL
            181]
          Length = 1920

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            +GA Y    +        ++K +  I++      ++ +  F                  K
Sbjct: 1694 SGASYVSPHRALIF---CQMKEMLDIVQSEVLKKLLPSVQFL--------RLDGSVEATK 1742

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R     
Sbjct: 1743 RQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR----- 1796

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1797 AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1837


>gi|116201585|ref|XP_001226604.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88177195|gb|EAQ84663.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 1125

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 423 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L         +     G T
Sbjct: 483 EHLV--YNAGKMIVLDKLLKRMQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 541 AHEDRIAAIDDYNKPDSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 600 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 640


>gi|255714703|ref|XP_002553633.1| KLTH0E03476p [Lachancea thermotolerans]
 gi|238935015|emb|CAR23196.1| KLTH0E03476p [Lachancea thermotolerans]
          Length = 1474

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++          ++       L  L++             G 
Sbjct: 1193 PDKSLLQYDCGKLQKLATLLRDLKDGGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGA 1252

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +D   + + +N + +I        S G G+NL  G + ++F+   W+    +Q  +R
Sbjct: 1253 TKIEDRQILTERFNTDNRITAFILSSRSGGLGINLT-GADTVIFYDSDWNPAMDKQCQDR 1311

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1312 C-----HRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQ 1352


>gi|45201219|ref|NP_986789.1| AGR123Cp [Ashbya gossypii ATCC 10895]
 gi|44986073|gb|AAS54613.1| AGR123Cp [Ashbya gossypii ATCC 10895]
          Length = 1422

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 673 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSSQRRI 732

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 733 SIDHFNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 786

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 787 RIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 825


>gi|225559675|gb|EEH07957.1| chromodomain helicase hrp3 [Ajellomyces capsulatus G186AR]
          Length = 1552

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 782 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 841

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 842 LSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 895

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 896 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 926


>gi|45187775|ref|NP_983998.1| ADL098Cp [Ashbya gossypii ATCC 10895]
 gi|44982536|gb|AAS51822.1| ADL098Cp [Ashbya gossypii ATCC 10895]
          Length = 804

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K++ L+ ++ +  A    +++   F S L  ++                   +    
Sbjct: 559 TSGKLQILQQLLPRLLAAKHKVLIFSQFVSMLDLIEDWCELNNYSACRIDGSMDNETRRE 618

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  ++E   P  L      + G G+NL    + ++ F   W+ +   Q ++R       
Sbjct: 619 QINSFSEKGSPHSLFLLSTRAGGLGINLT-AADSVILFDNDWNPQVDLQAMDR-----SH 672

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G +  V VY L    T++ ++L R   K  ++ L++   K  T+ 
Sbjct: 673 RIGQQHPVIVYRLYCDKTVESVILARATNKRKLEQLVIQMGKFSTLK 719


>gi|159125579|gb|EDP50696.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            fumigatus A1163]
          Length = 1509

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K+K LE+++ K       +++   F  +L  ++        L +             
Sbjct: 987  ASGKLKLLEIMLPKLKQRGHRVLIFSQFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQK 1046

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1047 RIDEYNADNSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AH 1100

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K  V V+ L+ + +++E ++Q  + K  +  +L++ +  E
Sbjct: 1101 RIGQKNKVLVFQLMTRGSVEEKIMQIGKKKMVLDHVLIDRMVAE 1144


>gi|70993280|ref|XP_751487.1| chromatin remodeling complex subunit (Chd3) [Aspergillus fumigatus
            Af293]
 gi|66849121|gb|EAL89449.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            fumigatus Af293]
          Length = 1509

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K+K LE+++ K       +++   F  +L  ++        L +             
Sbjct: 987  ASGKLKLLEIMLPKLKQRGHRVLIFSQFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQK 1046

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1047 RIDEYNADNSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AH 1100

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K  V V+ L+ + +++E ++Q  + K  +  +L++ +  E
Sbjct: 1101 RIGQKNKVLVFQLMTRGSVEEKIMQIGKKKMVLDHVLIDRMVAE 1144


>gi|183234185|ref|XP_650328.2| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801218|gb|EAL44942.2| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 764

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 50/236 (21%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV----YYDEEKHWKEVHDEK- 55
           +K Y    +E    L+ + ++  ++        +L N       Y  EEK     +DEK 
Sbjct: 449 IKLYKIMLKE----LEKKKLDQCSALKYIQLFTKLCNHPSLISKYLTEEKISLNENDEKC 504

Query: 56  -----------------IKALEVIIEKANAAPIIVA-YHFNSDLARL----------QKA 87
                            I+ ++ I+ K+    ++V+ Y    DL  +          +K 
Sbjct: 505 IKGISLNEESSNKFNITIQFIKEILIKSKEKVVLVSNYTKTLDLFEIYFKQEEEYKQKKI 564

Query: 88  FPQGRTLDKDPC-----TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           F   R   K         +++ N+      +L     + G GLNL  G + L+ F   W+
Sbjct: 565 FNYLRLDGKTSQKQRDIIVEKINDKSSNYNILLLSSKAGGVGLNL-IGCSRLILFDPDWN 623

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + +Q + RI      + G ++   +Y ++   TI+E + QR   K+ I + ++ 
Sbjct: 624 PAKDKQAMARIW-----RDGQQKKAMIYRMLCTGTIEEKIYQRQLQKNQISESIIE 674


>gi|17539642|ref|NP_502082.1| Phasmid Socket Absent family member (psa-4) [Caenorhabditis elegans]
 gi|10312098|gb|AAG16655.1|AF230280_1 SWI2/SNF2-like protein [Caenorhabditis elegans]
 gi|3875463|emb|CAA92768.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|3879468|emb|CAA92978.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1474

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTL-DKDPCTIQ 102
            K++ L+ I+ K  A    I++ +   S            R       G T  D+    + 
Sbjct: 851  KLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLT 910

Query: 103  EWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N     L        + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 911  QFNAPNSDLFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIG 964

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 965  QKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1003


>gi|325096446|gb|EGC49756.1| RING-13 protein [Ajellomyces capsulatus H88]
          Length = 1188

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 39/220 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-- 62
               +R+    L+     A ++ +K      L           +W  V   KI+    I  
Sbjct: 971  KAVERKSLPQLKKNA--ARSAEAKREYMRYLT---------DNW--VTSAKIEKTMEILR 1017

Query: 63   -----IEKANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
                 I + +  P   IV   F S L  LQ    +            +   ++   ++  
Sbjct: 1018 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1077

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1078 DSQNHTIMLISLKAGNSGLNL-VAASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1131

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V V+ ++   T+++ +L+    K  + +  L+    ++I 
Sbjct: 1132 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSIG 1171


>gi|317025573|ref|XP_001389339.2| ISWI chromatin-remodeling complex ATPase ISW2 [Aspergillus niger
           CBS 513.88]
          Length = 1121

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 434 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 493

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 494 EHLV--YNAGKMTILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 551

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+   +  +      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 552 AHEDRIAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR 610

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 611 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|307183105|gb|EFN70022.1| TATA-binding protein-associated factor 172 [Camponotus floridanus]
          Length = 1883

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++     + L  ++K                      +    +  +N +  I +L  
Sbjct: 1668 HRALIFCQLKAMLDIVEKDLLRTHLPTVTYLRLDGSVPAAQRHSVVARFNADPSIDVLLL 1727

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI ++
Sbjct: 1728 TTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRS 1781

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K    + +++
Sbjct: 1782 TVEEKIMGLQKFKLLTANTIIS 1803


>gi|302912567|ref|XP_003050729.1| SWI/SNF family of DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
 gi|256731667|gb|EEU45016.1| SWI/SNF family of DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
          Length = 1117

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 41/225 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYY-D 43
           + Q + Y  +  ++I+A N A              +QL               G  Y  D
Sbjct: 418 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 477

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
           E   +       +  L   +EK   + +++    +  L  L+               G  
Sbjct: 478 EHLVYNAGKMAVLDKLLNRLEK-QGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTA 536

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +     I E+N+   +  +      + G G+NL    +I++ +   W+ +   Q ++R 
Sbjct: 537 HEDRIAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR- 594

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 595 ----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 635


>gi|240280484|gb|EER43988.1| RING-13 protein [Ajellomyces capsulatus H143]
          Length = 1188

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 39/220 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-- 62
               +R+    L+     A ++ +K      L           +W  V   KI+    I  
Sbjct: 971  KAVERKSLPQLKKNA--ARSAEAKREYMRYLT---------DNW--VTSAKIEKTMEILR 1017

Query: 63   -----IEKANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
                 I + +  P   IV   F S L  LQ    +            +   ++   ++  
Sbjct: 1018 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1077

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1078 DSQNHTIMLISLKAGNSGLNL-VAASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1131

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V V+ ++   T+++ +L+    K  + +  L+    ++I 
Sbjct: 1132 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSIG 1171


>gi|126313652|ref|XP_001368284.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 982

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 31/218 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEV-------- 51
           K Y      L  DL     E            QL    G  Y  +    +          
Sbjct: 373 KYYKAL---LMKDLDAFENETAKKVKLQNILSQLRKCVGHPYLFDGVEPEPFEIGDHLIE 429

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
              K+  L+ ++         +++       L  LQ              G    ++   
Sbjct: 430 ASGKLHLLDKLLSFLYTRHHRVLLFSQMTHMLDILQDYMDYRGYSYERLDGSVRGEERHL 489

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ + +  I +      + G G+NL    + ++F    ++ +   Q I R       + 
Sbjct: 490 AIKNFGQQPIFVFLLSTKAGGVGMNLT-AADTVIFVDSDFNPQNDLQAIAR-----AHRI 543

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K++V +  LI ++T++E++ +R  +K  +   ++  
Sbjct: 544 GQKKSVKIIRLIGRDTVEEVIYRRAASKLRLTSAIIEG 581


>gi|119499894|ref|XP_001266704.1| chromatin remodeling complex subunit (Chd3), putative [Neosartorya
            fischeri NRRL 181]
 gi|119414869|gb|EAW24807.1| chromatin remodeling complex subunit (Chd3), putative [Neosartorya
            fischeri NRRL 181]
          Length = 1509

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K+K LE+++ K       +++   F  +L  ++        L +             
Sbjct: 986  ASGKLKLLEIMLPKLKQRGHRVLIFSQFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQK 1045

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1046 RIDEYNADNSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AH 1099

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K  V V+ L+ + +++E ++Q  + K  +  +L++ +  E
Sbjct: 1100 RIGQKNKVLVFQLMTRGSVEEKIMQIGKKKMVLDHVLIDRMVAE 1143


>gi|226289865|gb|EEH45349.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1146

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 435 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 494

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 495 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 552

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 553 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 611

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 612 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 665


>gi|150864381|ref|XP_001383167.2| chromatin remodeling complex Adenosinetriphosphatase
           [Scheffersomyces stipitis CBS 6054]
 gi|149385637|gb|ABN65138.2| chromatin remodeling complex Adenosinetriphosphatase
           [Scheffersomyces stipitis CBS 6054]
          Length = 1222

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  L  ++I+A N                +QL               G  Y ++
Sbjct: 541 EMQIQWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTND 600

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ +++K  +  + +++    +  L  L+              G T
Sbjct: 601 EHLV--FNSGKMVILDKMLQKFKSEGSRVLIFSQMSRLLDILEDYCYLRDYSYCRIDGST 658

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+ +    +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 659 SHEDRIEAIDQYNDPESDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 717

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E VL R   K  +  L++ 
Sbjct: 718 -----AHRIGQKKQVKVYRFVTENAIEEKVLDRAAQKLRLDQLVIQ 758


>gi|145475913|ref|XP_001423979.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391041|emb|CAK56581.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1079

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 18/155 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQ 102
           K+  L  +I K  +    II+       L          ++      G T ++     ++
Sbjct: 770 KMNTLVSLIYKLKSQNHKIIIFTQMTKMLDIFEAVLSLSKISYLRLDGSTPVEMRQKIVE 829

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N+  I    +   S G GLNL  G + ++F+   W+    +Q  +R       + G  
Sbjct: 830 SFNQLNITCFISSTRSGGIGLNLT-GADTVIFYDTDWNPAMDKQAQDRC-----HRIGQV 883

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R V +Y LI  +TI+E +  +   K  + D ++ +
Sbjct: 884 RPVTIYRLITNSTIEENIFLKSLQKRQLDDFVMQS 918


>gi|85109522|ref|XP_962958.1| hypothetical protein NCU07837 [Neurospora crassa OR74A]
 gi|28924603|gb|EAA33722.1| hypothetical protein NCU07837 [Neurospora crassa OR74A]
          Length = 1150

 Score = 93.5 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 19/144 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPAS 118
            IIE            F      +      G+T  KD  T+  Q  N+  + L       
Sbjct: 738 DIIEA-----------FVRRQDGINYLRMDGKTPVKDRQTLVDQFNNDPDLHLFLLTTKV 786

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G NL  G N ++ F   W+     Q  ER       + G K+ V +Y L+   TI+E
Sbjct: 787 GGLGTNLT-GANRVIIFDPDWNPSTDVQARERAW-----RLGQKKEVTIYRLMTAGTIEE 840

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +  R   K  + + +L   K++T
Sbjct: 841 KIYHRQIFKQFLSNKVLKDPKQQT 864


>gi|302894367|ref|XP_003046064.1| hypothetical protein NECHADRAFT_91099 [Nectria haematococca mpVI
           77-13-4]
 gi|256726991|gb|EEU40351.1| hypothetical protein NECHADRAFT_91099 [Nectria haematococca mpVI
           77-13-4]
          Length = 884

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAF 88
            L+ A      D      E    K +A+  I++     P   ++V   + S L  ++   
Sbjct: 690 LLEPAPEDAGDDASSFDAETQSSKTEAMLQILKATVRKPGSKVVVFSQWTSFLNIIEVQL 749

Query: 89  P-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                         +T  +D       N+    ++ A  A C  GLNL    + ++    
Sbjct: 750 KAEGIGFTRIDGSMKTDKRDSAIEALDNDPDTRVMLASLAVCSVGLNL-VAADTVILSDS 808

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           WW      Q I+R+      + G  R   V+ L+ + +++E VL   + K  +
Sbjct: 809 WWAPAIEDQAIDRV-----HRLGQTRETTVFRLVMEGSVEERVLNIQKEKREL 856


>gi|240279419|gb|EER42924.1| chromodomain helicase hrp3 [Ajellomyces capsulatus H143]
          Length = 1540

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 770 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 829

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 830 LSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 883

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 884 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 914


>gi|227543556|ref|ZP_03973605.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227186396|gb|EEI66467.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L  L+ K   
Sbjct: 1   TLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILAALKRKDKT 55

Query: 191 QDLLLNALKK 200
           Q  L+NA+K 
Sbjct: 56  QLALINAVKA 65


>gi|295660997|ref|XP_002791054.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb01]
 gi|226280981|gb|EEH36547.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 1154

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 452 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 511

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 512 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 569

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 570 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 628

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 629 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 682


>gi|261197291|ref|XP_002625048.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595678|gb|EEQ78259.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1129

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 425 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 484

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 485 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 542

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 543 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 601

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 602 ADLQAMDR-----AHRIGQTKQVIVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 655


>gi|159124373|gb|EDP49491.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1141

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 40   VYYDEEKH-WKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT---- 93
            +Y +   +  + +   KI+ L  I+  +A     IV   F S L +++    +       
Sbjct: 889  IYLNPGDNETQVLPSTKIRHLMKILRREAADYKFIVFSVFTSMLDKIEPFLKRAGIGFAR 948

Query: 94   --------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    L +        N     +L     +   GLNL    + +V    +W+    +
Sbjct: 949  YDGSMRNDLREASLDKLRHNSA-TRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEE 1006

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q I+R+      +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1007 QAIDRV-----HRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1053


>gi|391640|dbj|BAA03262.1| ORF2 [Gallus gallus]
          Length = 560

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 52  GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 111

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 112 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 165

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 166 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 198


>gi|70991923|ref|XP_750810.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66848443|gb|EAL88772.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1141

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 40   VYYDEEKH-WKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT---- 93
            +Y +   +  + +   KI+ L  I+  +A     IV   F S L +++    +       
Sbjct: 889  IYLNPGDNETQVLPSTKIRHLMKILRREAADYKFIVFSVFTSMLDKIEPFLKRAGIGFAR 948

Query: 94   --------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    L +        N     +L     +   GLNL    + +V    +W+    +
Sbjct: 949  YDGSMRNDLREASLDKLRHNSA-TRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEE 1006

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q I+R+      +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1007 QAIDRV-----HRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1053


>gi|67609493|ref|XP_667013.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658094|gb|EAL36778.1| hypothetical protein Chro.60441 [Cryptosporidium hominis]
          Length = 1102

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 37/221 (16%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKC------LQL--ANGAVY---------YDEEKHWK 49
            QR LY DL  +N++A        K       +QL  A    Y          D      
Sbjct: 432 MQRRLYKDLLSKNVDALQEKEGGGKLRLINLAMQLRKACNHPYLFDGYEDKSVDPFGEHV 491

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-- 100
             +  K+  ++ +I+K  +  + I++       L  L+     + FP  R          
Sbjct: 492 VENSGKMVLMDRLIKKLVSGGSRILIFSQMARVLDILEDYCHMRGFPYCRIDGNTSGDDR 551

Query: 101 ---IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +   Q ++R     
Sbjct: 552 DRQISEFNKPNSEKLVFLLSTRAGGLGINL-ATADIVILYDSDWNPQADLQAMDR----- 605

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ VFV+ L  ++TI+E +++R   K  +   ++ 
Sbjct: 606 AHRIGQKKPVFVFRLCHEHTIEEKIIERANLKLQLDFAIIQ 646


>gi|322711493|gb|EFZ03066.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1025

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 19/163 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP 98
            E+   K+  L  +I +   N   ++V   F+  +  LQ+             G T   + 
Sbjct: 844  ELDSGKVTKLLELIRQYQENGDRVLVFSKFSRLIDLLQEVLALQGIDHRVLMGSTDVSER 903

Query: 99   CT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I E+N    IP+      + G G+NL    N ++ F    + ++  Q        R 
Sbjct: 904  QVLIDEFNGNANIPVFLLTTGAGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRA 957

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G KR V V  LIA  TI+ELV +  + K  + + +  AL+
Sbjct: 958  HRLGQKRDVEVVRLIASQTIEELVYKACQKKIELANKVTGALE 1000


>gi|296422807|ref|XP_002840950.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637177|emb|CAZ85141.1| unnamed protein product [Tuber melanosporum]
          Length = 1046

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI--QEWNEGKIPLLFA 114
           A     ++       L  L++             G T  +    +  +  N+ +I +   
Sbjct: 734 AGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGATKVEQRQILTDRFNNDTRILVFIL 793

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G G+NL  G + ++F+ L W+    +Q  +R       + G  R V +Y  +++ 
Sbjct: 794 STRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDRC-----HRIGQTRDVHIYRFVSEY 847

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+  +L++   K  + D+++ 
Sbjct: 848 TIESNILRKSNQKRMLDDVVIQ 869


>gi|227544624|ref|ZP_03974673.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185390|gb|EEI65461.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L  L+ K   
Sbjct: 1   TLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILAALKRKDKT 55

Query: 191 QDLLLNALKK 200
           Q  L+NA+K 
Sbjct: 56  QLALINAVKA 65


>gi|168019640|ref|XP_001762352.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
 gi|162686430|gb|EDQ72819.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
          Length = 1289

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP--------- 89
            Y  E +        K + L+ ++ K       +++       +  L+             
Sbjct: 844  YEPENRDELIRSSGKFELLDRLLPKLAKTGHRVLLFSQMTRLMDILEDYLEWHGFKFLRL 903

Query: 90   QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  ++    +Q++N    P  +      + G GLNLQ   + ++ F   W+ +  QQ
Sbjct: 904  DGTTKTEERGTLLQKFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVILFDSDWNPQMDQQ 962

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +R       + G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 963  AEDR-----AHRIGQKKEVRVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 1008


>gi|169767388|ref|XP_001818165.1| DNA-dependent ATPase [Aspergillus oryzae RIB40]
 gi|83766020|dbj|BAE56163.1| unnamed protein product [Aspergillus oryzae]
          Length = 957

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 22/167 (13%)

Query: 46  KHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +H+      K   +  L  I+  + +  +++  ++ S L  L                  
Sbjct: 606 RHFSPSSSAKIRVLDQLLHILHTSTSEKVVLVSNYTSTLNLLATLLTSLSLPFLRLDGST 665

Query: 93  TLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    ++++N     +         + G GLNL  G + L+ F + W+     Q + 
Sbjct: 666 PAQKRQSLVEDFNRFPTNRCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAMA 724

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 725 RI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKLGLADSVME 766


>gi|170092399|ref|XP_001877421.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
 gi|164647280|gb|EDR11524.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
          Length = 1291

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            ++  K+  L+ ++ +   +   +++       L  L           +        +  
Sbjct: 584 VMNSGKMVLLDKLLARLRQDGHRVLIFSQMVRMLDILSDYMSLRGYLHQRLDGMVASEAR 643

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I  +N    P         + G G+NL    + ++ F   W+ +   Q + R     
Sbjct: 644 KKSIAHFNTPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR----- 697

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V VY  ++++T++E VL+R + K  ++  ++N +     H+
Sbjct: 698 AHRIGQKSHVSVYRFVSKDTMEEDVLERAKKKMVLEYAIINQMDTSQAHL 747


>gi|320592804|gb|EFX05213.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407]
          Length = 901

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT-IQEWNEGKI-PLLFAH 115
              +++   F + L  L+               G     D  + I+ +N      L    
Sbjct: 673 GHKVLIFSQFKTQLDLLEAYCAELRGWAVCRIDGSVAHADRQSQIELFNADAAHRLFLLS 732

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++  Q        R  + G  R V VY L  + T
Sbjct: 733 TRAGGQGINL-ASADTVILFDSDWNPQQDLQA-----QDRAHRIGQTRPVVVYRLATKGT 786

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 787 VEEELLLSADAKRRLEKLVI 806


>gi|70953850|ref|XP_746001.1| PfSNF2L [Plasmodium chabaudi chabaudi]
 gi|56526492|emb|CAH76599.1| PfSNF2L, putative [Plasmodium chabaudi chabaudi]
          Length = 879

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD--------EEKHWK 49
           K Q++LY D+  +NI+  N+ +          +QL    N    +D        E  H +
Sbjct: 29  KLQKKLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHIE 88

Query: 50  EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDP 98
                K+  L+ ++ +     + +++       L  +         +     G T+  + 
Sbjct: 89  --TSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRIDGSTVGDER 146

Query: 99  CT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++NE   K  +      + G G+NL    +I++ F   ++ +   Q ++R     
Sbjct: 147 QIRINKFNEPNSKYFIFLLSTTAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR----- 200

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V VY  +  N+++E +++R   K  +  L++ 
Sbjct: 201 AHRIGQKKRVIVYRFVTHNSVEEKIVERAPKKLKLDSLIIQ 241


>gi|239606662|gb|EEQ83649.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis ER-3]
 gi|327351568|gb|EGE80425.1| ISWI chromatin-remodeling complex ATPase ISW1 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1132

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 428 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 487

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 488 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 545

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 546 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 604

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 605 ADLQAMDR-----AHRIGQTKQVIVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 658


>gi|156086846|ref|XP_001610830.1| chromo-helicase DNA-binding protein [Babesia bovis T2Bo]
 gi|154798083|gb|EDO07262.1| chromo-helicase DNA-binding protein, putative [Babesia bovis]
          Length = 1729

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
              KI  L+ ++ +       +++       L  + +         +              
Sbjct: 1039 SGKICLLDKLLARLKERGHRVLIFSQMVRMLNIISEYLTMRGFKHQRLDGTMGREVRKKA 1098

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N+             + G G+NL    + ++ +   W+ +   Q   R       +
Sbjct: 1099 MDHFNDPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQNDLQAEAR-----AHR 1152

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             G  + V +Y L+ +++I++ +L+R +TK  +  L++  L K+ 
Sbjct: 1153 IGQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKKG 1196


>gi|119479095|ref|XP_001259576.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Neosartorya fischeri NRRL 181]
 gi|119407730|gb|EAW17679.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Neosartorya fischeri NRRL 181]
          Length = 967

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           +L    I          K LQ     V  + +       D+ +   E ++     +  + 
Sbjct: 483 ELGEHLINQSGKFLVLKKLLQ---HYVTTETKVIVFSNFDQCLNLCEDLVMMLQGSNRVF 539

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQ--EWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            Y           A   GRT       +     N+ +  +      + G GLNL    ++
Sbjct: 540 EY-----------ARLDGRTTGPWRKVMVHLFQNDPRYKVFLISIRAGGEGLNLT-SSSV 587

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +VF    W+ +  +Q   R+      + G  R V +Y L +  T++E + +RL  K+ I 
Sbjct: 588 VVFLDEDWNPQVMRQAEARV-----HRIGQTRPVVIYKLRSTGTVEEQMSRRLVKKAYIA 642

Query: 192 DLLLN 196
           D +  
Sbjct: 643 DRVTE 647


>gi|325089685|gb|EGC42995.1| chromodomain helicase [Ajellomyces capsulatus H88]
          Length = 1552

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 782 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDIRGYAYQRLDGTIAAGPRR 841

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 842 LSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 895

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 896 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 926


>gi|296808475|ref|XP_002844576.1| RAD54B protein [Arthroderma otae CBS 113480]
 gi|238844059|gb|EEQ33721.1| RAD54B protein [Arthroderma otae CBS 113480]
          Length = 960

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 691 KRQALVDDFNRSSPSACFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDLQAMARI- 748

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 749 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 788


>gi|320031640|gb|EFW13600.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1123

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 431 EMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 490

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 491 EHLV--DNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGST 548

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N  +    +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 549 AHEDRIAAIDDYNRPESDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 607

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 608 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 653


>gi|119192338|ref|XP_001246775.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 1075

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 383 EMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 442

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 443 EHLV--DNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGST 500

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N  +    +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 501 AHEDRIAAIDDYNRPESDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 559

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 560 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 605


>gi|323452051|gb|EGB07926.1| hypothetical protein AURANDRAFT_26999 [Aureococcus anophagefferens]
          Length = 639

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 66  ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE-WNEG--KIPLLF 113
           A  + +++       L  L         +     G T   D  +  + +N    +     
Sbjct: 444 AQDSRVLIFSQMTRMLDILEDYMRLNQYKYCRIDGSTSGDDRDSQMDVFNAPGSEKFAFL 503

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +I+V +   W+ +   Q ++R       + G  + V V+  + +
Sbjct: 504 LSTRAGGLGINL-ATADIVVLYDSDWNPQVDLQAMDR-----AHRIGQTKPVTVFRFVTE 557

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
            T++E +++R   K  +   ++ 
Sbjct: 558 GTVEEKIIERADRKLFLDAAVIQ 580


>gi|310791654|gb|EFQ27181.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1458

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y +     + +  D QG    A   ++  ++  +L N    + E ++     +     
Sbjct: 820  KLYKQMVTHNKIVVSDGQGGKAGARGLSNMIMQLRKLCNHPFVFGEVENTMNPLNISNDM 879

Query: 59   LE------VIIEK------ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DK 96
            L        ++++      A    +++ +   + +           L+     G T  D+
Sbjct: 880  LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDYLRYRNLKYLRLDGTTKSDE 939

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N       +      + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 940  RSDLLREFNAPDSEYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 993

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 994  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1038


>gi|302819164|ref|XP_002991253.1| hypothetical protein SELMODRAFT_429604 [Selaginella moellendorffii]
 gi|300140964|gb|EFJ07681.1| hypothetical protein SELMODRAFT_429604 [Selaginella moellendorffii]
          Length = 959

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
           +A     IV   + S L  L+    +              +++D    +     ++ ++ 
Sbjct: 801 RAETEKAIVFSQWTSMLDLLEPQLRKADLRFSRLDGTMTVVERDSAVTEFNTNPEVSVMI 860

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   GLN+    ++L+   +WW+     Q I+R       + G  R V V     +
Sbjct: 861 MSLKAASLGLNMVAACHVLLL-DVWWNPTTEDQAIDR-----AHRIGQTRPVHVSRFTVK 914

Query: 174 NTIDELVLQRLRTKSTI 190
           NTI++ +L     K  +
Sbjct: 915 NTIEDRILALQERKKQM 931


>gi|255077555|ref|XP_002502414.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517679|gb|ACO63672.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1050

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 86  KAFPQGRTLDKDPC-TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            A   G T  KD    + ++N  + + +      + G GLN+    N +V F   W+  +
Sbjct: 659 YARLDGSTAGKDRQKLVDDFNASESLFVFLLSTGAGGVGLNIT-SANRVVIFDPNWNPAK 717

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Q        R  + G +R V VY L+A  TI+E+V QR   K    ++ ++A K+ 
Sbjct: 718 DAQA-----QDRAYRIGQRRDVDVYRLLAAGTIEEMVYQRQVYKQQQSNVAVDASKER 770


>gi|159476244|ref|XP_001696221.1| SNF2/RAD54 family protein [Chlamydomonas reinhardtii]
 gi|158282446|gb|EDP08198.1| SNF2/RAD54 family protein [Chlamydomonas reinhardtii]
          Length = 1877

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-------------A 87
            D E +       K++  E +++   A     ++       L   +K              
Sbjct: 1185 DAEDYGNPARSGKLRVAERVLDSWRAAGHKALLFCQTQQMLDIFEKLARSKKSPAWSYHR 1244

Query: 88   FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G  +      I ++N    + L        G G+NL  G   ++ +   W+     Q
Sbjct: 1245 MDGGTPVASRSRLIDDFNNNPDVFLFLLTTKVGGLGVNLT-GATRVMLYDPDWNPSTDIQ 1303

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ER       + G  + V +Y LI   TI+E V  R   K+ + + +L
Sbjct: 1304 ARERAW-----RIGQSQPVTIYRLITAGTIEEKVYHRQIYKNFLTNKVL 1347


>gi|156064177|ref|XP_001598010.1| hypothetical protein SS1G_00096 [Sclerotinia sclerotiorum 1980]
 gi|154690958|gb|EDN90696.1| hypothetical protein SS1G_00096 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1103

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ ++ +++  K      ++       L  L++   +           G  +     
Sbjct: 756 SGKMQVVKALLQMWKGYGHKTLLFSQGVQMLDILEEFVKKLGGFNYLRMDGGTAIKDRQT 815

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N    + +        G G+NL  G N ++ F   W+     Q  ER       +
Sbjct: 816 LVDQFNNDPNMHVFLLTTKVGGLGVNLT-GANRVIIFDPDWNPSTDVQARERAW-----R 869

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 870 LGQKKEVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 912


>gi|134055853|emb|CAK96198.1| unnamed protein product [Aspergillus niger]
          Length = 1007

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 24/174 (13%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQGR 92
           +H+      K++ L+ +++         I++  ++ S L  L                  
Sbjct: 624 RHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTSTLNLLANLLTSLSLPFLRLDGST 683

Query: 93  TLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    ++++N               + G GLNL  G + LV F + W+     Q + 
Sbjct: 684 PAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMA 742

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           RI      + G KR   +Y ++ + +++E + QR  TK  + D ++   KK+++
Sbjct: 743 RI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME--KKDSV 789


>gi|50555271|ref|XP_505044.1| YALI0F05698p [Yarrowia lipolytica]
 gi|74632870|sp|Q6C2R8|RAD5_YARLI RecName: Full=DNA repair protein RAD5
 gi|49650914|emb|CAG77851.1| YALI0F05698p [Yarrowia lipolytica]
          Length = 1025

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 53   DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCT--I 101
              K+ AL   +++    A  +V   F S L  +Q        +AF    TL +   T  +
Sbjct: 858  SSKLVALVSKLKQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVL 917

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +   K  +L     + G GLNL    +  +    WW   +  Q I+RI      + G 
Sbjct: 918  KAFGLSKGSVLLISLKTGGVGLNLVTANHAFIM-DPWWTFAQEAQAIDRI-----HRMGQ 971

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + V V   I +N+++E +L+  + K  +   L
Sbjct: 972  TKDVHVTRFIVENSVEEKMLKIQQQKMVLAGTL 1004


>gi|50311677|ref|XP_455865.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74689997|sp|Q6CJM4|RAD5_KLULA RecName: Full=DNA repair protein RAD5
 gi|49645001|emb|CAG98573.1| KLLA0F17479p [Kluyveromyces lactis]
          Length = 1114

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)

Query: 50   EVHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTL------- 94
                 KIKAL    + I E +    IIV   F+S L      L+   P+ + +       
Sbjct: 935  HFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGR 994

Query: 95   ---DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +    ++++++     I LL     + G GLNL    +       WW      Q I
Sbjct: 995  LDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLNLTC-ASRAFMMDPWWSPGMEDQAI 1053

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +RI      + G ++ V V   I  N+++E +L+    K  + D++
Sbjct: 1054 DRI-----HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094


>gi|328771180|gb|EGF81220.1| hypothetical protein BATDEDRAFT_16302 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 704

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 23/176 (13%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEV---IIEKANAA-PIIVAYHFNSDLARLQKAFPQGR 92
           N  V Y +  +W+     KI+AL     ++++ +A    IV   F S L  +Q    +  
Sbjct: 518 NSIVNYIDLANWR--SSTKIEALVEELTLLQRDDATSKSIVFSQFVSFLDLVQWRLIRAG 575

Query: 93  -----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                         +D        +  I +      + G  LNL     + V    WW+ 
Sbjct: 576 FNVVKLDGRMAPFQRDDVINSFMTDPSITVFLVSLKAGGVALNLTEASRVFVL-DPWWNP 634

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q  +RI      + G  R + +  +I +N+I+  +L     K  + D  +  
Sbjct: 635 AAEDQAFDRI-----HRLGQYRPIKITRIIVENSIESRILMLQEKKKALFDSTVGG 685


>gi|317026496|ref|XP_001389729.2| DNA-dependent ATPase [Aspergillus niger CBS 513.88]
          Length = 993

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 24/174 (13%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQGR 92
           +H+      K++ L+ +++         I++  ++ S L  L                  
Sbjct: 610 RHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTSTLNLLANLLTSLSLPFLRLDGST 669

Query: 93  TLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    ++++N               + G GLNL  G + LV F + W+     Q + 
Sbjct: 670 PAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMA 728

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           RI      + G KR   +Y ++ + +++E + QR  TK  + D ++   KK+++
Sbjct: 729 RI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME--KKDSV 775


>gi|307105234|gb|EFN53484.1| hypothetical protein CHLNCDRAFT_136777 [Chlorella variabilis]
          Length = 1320

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTI-QEWN 105
            + AL      A +  +++  +    L  L+              G     +  T+  ++N
Sbjct: 861  LDALLKTWRDAGSNKVLLFSNSVQTLNILKAMVTASGYDYIMLDGSVPQAERQTLCDKFN 920

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G GLNL    N +V F   W+     Q        R  + G KR 
Sbjct: 921  TQPSTFIFLISTLAGGVGLNLT-AANKVVIFDPSWNPAMDLQA-----QDRAFRIGQKRD 974

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LIA  T++E++  R   K    +++L  
Sbjct: 975  VSVYRLIAAGTMEEIIYDRQLYKQMHSEIVLEG 1007


>gi|306419500|emb|CBW48563.1| C. elegans protein Y111B2A.22b, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1882

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +++    ++ +N + K+        S G G+NL  G + ++F+   W+     Q  +R  
Sbjct: 1240 VEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC- 1297

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1298 ----HRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAID 1337


>gi|303312905|ref|XP_003066464.1| Chromatin remodeling complex ATPase chain Iswi, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106126|gb|EER24319.1| Chromatin remodeling complex ATPase chain Iswi, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1123

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 431 EMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 490

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 491 EHLV--DNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGST 548

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N  +    +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 549 AHEDRIAAIDDYNRPESDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 607

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 608 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 653


>gi|328707730|ref|XP_001950458.2| PREDICTED: hypothetical protein LOC100159378 [Acyrthosiphon pisum]
          Length = 1320

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 24/163 (14%)

Query: 53   DEKIKALEVIIE-----KANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDK 96
              KIK +  ++      + N    I+   + S L  ++K            F     + K
Sbjct: 1145 STKIKTICDLVNQKVLIEGNKEKAIIVSQWPSFLYLIRKHLETTGNAKMEMFSGAIPIPK 1204

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I+E+N+      +L     + G GLNL    N +    + W+ +   Q  +R+   
Sbjct: 1205 RNKIIREFNQPNSGPQILLLSLKAGGVGLNL-MAANHMFLVDIHWNPQLEAQACDRV--- 1260

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G  + V+VY  I  NTI+  ++     K  + D L   
Sbjct: 1261 --YRVGQTKPVYVYKFICSNTIETRIMNIQTHKLQMADNLFKG 1301


>gi|327286256|ref|XP_003227847.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 1310

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 7   FQRELYCDLQGENIEAFNSA-------------SKTVKCLQLANGAVYYDEEKHWKEVHD 53
            +     DL G+  EA +                ++ K L L        EE H   V  
Sbjct: 415 LETSSCYDLDGDENEANDVLHQNIEHLSDQVLIEESGKLLFLVALLDRLQEEGHRTLVFS 474

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
           +  K L  IIE+     I+    F   L R+          +K     Q+    +  +  
Sbjct: 475 QSRKML-DIIER-----ILTRRRFK--LMRIDGTVTHLTEREKRIGMFQK--NSEYSVFL 524

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G GL L      +V F   W+     Q ++R       + G K  V +Y LI  
Sbjct: 525 LTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDR-----AYRIGQKANVVIYRLITC 578

Query: 174 NTIDELVLQRLRTKSTI 190
            T++E + +R   K ++
Sbjct: 579 GTVEEKIYRRQVFKDSL 595


>gi|159131635|gb|EDP56748.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
           A1163]
          Length = 969

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    K    ++++N     +         + G GLNL  G + LV F + W+   
Sbjct: 668 RLDGSTPAQKRQALVEDFNRLPPNRCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT 726

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q + RI      + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 727 DVQAMARI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 774


>gi|167378232|ref|XP_001734726.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165903652|gb|EDR29108.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 884

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           L  G   +D E   K     K+ A      + +   I++  ++   L  +     +    
Sbjct: 593 LPKGEALWDMELSGKTAFLAKLLAFL----RKHKEKIVIVSNYTETLNFIAHHCKKCGYP 648

Query: 91  ------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      K    +  +N  ++   +      + G GLNL  G N LV F   W+  
Sbjct: 649 YIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGAN-LVMFDPDWNPA 707

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Q + R+      + G K+   +Y  ++  T++E + QR   K  +   ++  
Sbjct: 708 NDEQAMGRVW-----RDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEG 757


>gi|70996252|ref|XP_752881.1| dsDNA-dependent ATPase (Rad54b) [Aspergillus fumigatus Af293]
 gi|66850516|gb|EAL90843.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
           Af293]
          Length = 969

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    K    ++++N     +         + G GLNL  G + LV F + W+   
Sbjct: 668 RLDGSTPAQKRQALVEDFNRLPPNRCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT 726

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q + RI      + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 727 DVQAMARI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 774


>gi|238504258|ref|XP_002383360.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220690831|gb|EED47180.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 974

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 295 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 354

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 355 EHLV--YNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTT 412

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 413 AHEDRIAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 471

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 472 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 517


>gi|126649341|ref|XP_001388342.1| SNF2 helicase [Cryptosporidium parvum Iowa II]
 gi|32398963|emb|CAD98428.1| SNF2 helicase, possible [Cryptosporidium parvum]
 gi|126117436|gb|EAZ51536.1| SNF2 helicase, putative [Cryptosporidium parvum Iowa II]
          Length = 1102

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 37/221 (16%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKC------LQL--ANGAVY---------YDEEKHWK 49
            QR LY DL  +N++A        K       +QL  A    Y          D      
Sbjct: 432 MQRRLYKDLLSKNVDALQEKEGGGKLRLINLAMQLRKACNHPYLFDGYEDKSVDPFGEHV 491

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-- 100
             +  K+  ++ +I+K  +  + I++       L  L+     + FP  R          
Sbjct: 492 VENSGKMVLMDRLIKKLVSGGSRILIFSQMARVLDILEDYCHMRGFPYCRIDGNTSGDDR 551

Query: 101 ---IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +   Q ++R     
Sbjct: 552 DRQISEFNKPNSEKLVFLLSTRAGGLGINL-ATADIVILYDSDWNPQADLQAMDR----- 605

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ VFV+ L  ++TI+E +++R   K  +   ++ 
Sbjct: 606 AHRIGQKKPVFVFRLCHEHTIEEKIIERANLKLQLDFAIIQ 646


>gi|326428818|gb|EGD74388.1| hypothetical protein PTSG_12442 [Salpingoeca sp. ATCC 50818]
          Length = 1313

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 32/195 (16%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVH------------DEKIKALEVIIEKA--NA 68
             +A+      QL  G     +E+    +               K++    ++E+     
Sbjct: 555 TTAAALNGADSQLHAGMSTVLDEETVNAIFNPHVSLHDVVKQSGKLRFCVHLLEQLRQEG 614

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEG-KIPLLFAHP 116
              ++       L  +     +               D+    + ++N    I  +    
Sbjct: 615 HRALLFSQSLKMLDIISAVLNEQGVKHSRLHGAISDTDERQKIVDDFNSDASIFCMLLTT 674

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GL L  G + ++ F   W+     Q ++R       + G  R V VY LI   TI
Sbjct: 675 QVGGVGLTLT-GADRVIIFDPSWNPSTDAQAVDR-----AYRIGQTRRVVVYRLITCGTI 728

Query: 177 DELVLQRLRTKSTIQ 191
           +E + ++   K  + 
Sbjct: 729 EEKIYRKQVFKDGLS 743


>gi|320581684|gb|EFW95903.1| Nucleosome remodeling factor [Pichia angusta DL-1]
          Length = 1384

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ K +     +++       L  +           +      +  K   
Sbjct: 673 SSGKMVLLDQLLNKLHRDGHRVLIFSQMVRILDIIGDYLQLKGHSFQRLDGTISSHKRRL 732

Query: 100 TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N    K  +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 733 AIDHFNAEGSKDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 786

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 787 RIGQKNHVMVYRFVSKDTVEEQVLERARRKMILEYAIIS 825


>gi|19074741|ref|NP_586247.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
 gi|19069383|emb|CAD25851.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
          Length = 823

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 22/171 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFP 89
           Y ++ KH  E +  K+  L+ ++    A  + +++    +  L  L+             
Sbjct: 341 YTND-KHIIE-NSGKMIVLDKLLASLKAKGSRVLIFSQMSMMLDILEDYAMFREYEYCRI 398

Query: 90  QGRTLDKDPC-TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    I  +N    +  L      + G G+NL    + ++ F   W+ +   Q
Sbjct: 399 DGSTSYRDRTEAIDGFNAEGSEKFLFLLTTRAGGLGINLST-ADTVILFDSDWNPQMDLQ 457

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   R  + G K+ V V+ LI++NT++E ++ R   K  + D+LL  
Sbjct: 458 A-----QDRAHRIGQKKQVVVFRLISENTVEERIVYRSLQKLKLDDILLQG 503


>gi|326473172|gb|EGD97181.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1113

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 428 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 487

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 488 EHLI--DNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 545

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    K  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 546 AHEDRIQAIDEYNRPGSKKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 604

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|302819037|ref|XP_002991190.1| hypothetical protein SELMODRAFT_429547 [Selaginella moellendorffii]
 gi|300141018|gb|EFJ07734.1| hypothetical protein SELMODRAFT_429547 [Selaginella moellendorffii]
          Length = 959

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
           +A     IV   + S L  L+    +              +++D    +     ++ ++ 
Sbjct: 801 RAETEKAIVFSQWTSMLDLLEPQLRKADLRFSRLDGTMTVVERDSAVTEFNTNPEVSVMI 860

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   GLN+    ++L+   +WW+     Q I+R       + G  R V V     +
Sbjct: 861 MSLKAASLGLNMVAACHVLLL-DVWWNPTTEDQAIDR-----AHRIGQTRPVHVSRFTVK 914

Query: 174 NTIDELVLQRLRTKSTI 190
           NTI++ +L     K  +
Sbjct: 915 NTIEDRILALQERKKQM 931


>gi|156384005|ref|XP_001633122.1| predicted protein [Nematostella vectensis]
 gi|156220188|gb|EDO41059.1| predicted protein [Nematostella vectensis]
          Length = 627

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
              K + L  ++ +   N   +++   F   +  +         +     G+T + +   
Sbjct: 468 DSGKFERLNAMLPEMKDNGDRVLLFSQFTLVMDIIEVYLQHCGYRYFRLDGQTPVVERQP 527

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N +  I L      + G G+NL    N+++   + ++    +Q  +R       +
Sbjct: 528 MIDNFNSDPDIFLFLLSTKAGGLGINLT-SANVVILHDIDFNPYNDKQAEDRC-----HR 581

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY LIA++T+++ +L+   +K  ++  +++A
Sbjct: 582 VGQTRDVHVYRLIAKDTVEDNMLKCANSKLKLEKDVVSA 620


>gi|14195095|sp|P79051|RHP16_SCHPO RecName: Full=ATP-dependent helicase rhp16; AltName: Full=DNA
           repair protein rhp16; AltName: Full=RAD16 homolog
          Length = 861

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKA------FPQGRTLDKD 97
              KI+AL      + +K      IV   F S L     RL+KA         G T    
Sbjct: 688 SSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKAR 747

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI+ + N+  I +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 748 AATIEAFSNDINITIFLVSLKAGGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI----- 801

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G KR + V  L  +N+I+  +++    K+ +    ++
Sbjct: 802 HRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATID 841


>gi|327351256|gb|EGE80113.1| transcriptional accessory protein [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1913

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K+Y + Q+      +  +I     A K      L       D         + ++     
Sbjct: 1635 KRYDEIQKS--LAGKNSHIRDVAHAPKLTALRDL-----LVDCGIGVDPSTEGELDTGAS 1687

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                       K    + ++N + 
Sbjct: 1688 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDP 1744

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1745 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1798

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1799 YRLITRGTLEEKILNLQRFKIDVASTVVN 1827


>gi|325179864|emb|CCA14266.1| hypothetical protein SORBIDRAFT_03g009030 [Albugo laibachii Nc14]
          Length = 938

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGK--IPLL 112
           K     +++       L  L++             G T  K+    + ++N+ +  I + 
Sbjct: 499 KDQGHRVLLFTQTRMMLDILERLMEHLGYNHCRLDGSTPVKERQRLLDKFNDAESGIFIF 558

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL  G N +V F   W+     Q  ER       + G  + V +Y LI 
Sbjct: 559 LLTTRAGGIGINL-AGANRVVIFDPDWNPSTDMQARERSW-----RIGQIKQVTIYRLIT 612

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             TI+E +  R   K  +   +L+  K++
Sbjct: 613 SGTIEEKIYHRQIFKQYLTTKVLHDPKRK 641


>gi|295669680|ref|XP_002795388.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb01]
 gi|226285322|gb|EEH40888.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb01]
          Length = 1520

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG---- 91
           G    +E          K+  L+ ++ K   +   +++       L  L           
Sbjct: 758 GKTGREEMMRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAY 817

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD          +I+ +N              + G G+NL    + +V F   W+ + 
Sbjct: 818 QRLDGTIAAGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA 876

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 877 DLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 915


>gi|190345081|gb|EDK36901.2| hypothetical protein PGUG_00999 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 542

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 35/213 (16%)

Query: 2   KQYHK-----FQRELYCDLQG---------ENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
           K Y +       +++  + +          E++E  +       C++    + Y  E+K 
Sbjct: 314 KLYDEEKLKQMAKDIMKEPEYVEANEQYIYEDMEVMSDYELNNLCVKFPTLSKYVLEDKE 373

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------D 95
           W  ++  K+  L   I++  A    ++V   F   L  L+K    G             D
Sbjct: 374 W--LNSGKVGLLMDHIKEIMARKERVLVFSLFTQMLDILEKVLTIGNIKFLRLDGQTSVD 431

Query: 96  KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + +   IP+      + G G+NL    N+++F       +      +R    
Sbjct: 432 TRQDLIDTFYDDDTIPVFLLSTKAGGFGINLVAANNVVIFD------QSFNPHDDRQAED 485

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R  + G    V V   I++ TI+E +LQ    K
Sbjct: 486 RAHRVGQTSEVLVTRFISKGTIEENMLQLAENK 518


>gi|171687152|ref|XP_001908517.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943537|emb|CAP69190.1| unnamed protein product [Podospora anserina S mat+]
          Length = 974

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 24/170 (14%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
           H  K KA   +I+    +A    II+   +   L+ L +   Q              +  
Sbjct: 732 HSTKTKATLDLIDGWQSEAPEDKIIIFVQWIPMLSILGRMLTQSGYRFVYFWGDLDQNDQ 791

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +++ + +   + ++ A      HGLNL    N  + +  WW++   QQ   R+     
Sbjct: 792 EQSLKTFRKVPAVKIMLASITCTAHGLNLTV-ANRAIMYDHWWNVCRQQQAFGRV----- 845

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL---KKETI 203
            + G  + V    ++   ++DE ++Q  + K T    +++ +   KK  I
Sbjct: 846 HRIGQTKEVHTAKIVVGGSVDERIIQIQQDKETAISGVMDGMDEIKKRPI 895


>gi|312374254|gb|EFR21844.1| hypothetical protein AND_16270 [Anopheles darlingi]
          Length = 476

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 56  IKAL-EVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
           + AL   + E+   + +++   F + L  L                          I ++
Sbjct: 224 LDALLAKLFER--GSRVLIFSQFVTMLQILADYLDWRGYNYCMLDGSSDFADRKEQIDDF 281

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N  K    +      + G G+NL +  + ++F+ + ++ +   Q  +R       + G K
Sbjct: 282 NRPKSDRFVFLLSTRAGGLGINL-FTADTVIFYDMDYNPQMDYQAEDR-----AHRIGQK 335

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +  +I + TIDE +      K  + + ++
Sbjct: 336 HQVHIIRMIVRGTIDESLHAITEQKKQLDESII 368


>gi|295661001|ref|XP_002791056.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb01]
 gi|226280983|gb|EEH36549.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb01]
          Length = 1481

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 992  ASSKLQLLEMLVPKLQERGHRVLIFSQFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQK 1051

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1052 QIDDYNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1105

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1106 RIGQQKKVLVFQLVTKASAEEKIMQIGKKKLALDQVLIEHMDAE 1149


>gi|168036988|ref|XP_001770987.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162677675|gb|EDQ64142.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1385

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 36/208 (17%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH-------WKEVHD 53
            M       + +     G+ ++   + +       L   AV  D+ +          E   
Sbjct: 1168 MNTLQALPKVIVLVEDGKIVKGPKAETL------LKAEAVEIDQGETLSSGLPVVSETTV 1221

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKD------PCTIQE 103
             KI  +E           IV   + S L  L    +K+    R LD           + +
Sbjct: 1222 SKIDKVEST------EKAIVFSQWTSMLDLLETPLKKSGLCYRRLDGTMSVVARDRAVSD 1275

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N   ++ ++     +   GLN+    N ++   +WW+     Q I+R       + G  
Sbjct: 1276 FNTLPEVTVMIMSLKAASLGLNM-VAANHVLLLDVWWNPTTEDQAIDR-----AHRIGQT 1329

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R V V     +NTI++ +L     K  I
Sbjct: 1330 RTVNVSRFTIKNTIEDRILALQERKRQI 1357


>gi|299753600|ref|XP_002911886.1| Mot1 [Coprinopsis cinerea okayama7#130]
 gi|298410374|gb|EFI28392.1| Mot1 [Coprinopsis cinerea okayama7#130]
          Length = 1929

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 21/199 (10%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
              L  +++    +A K +   QL     +             E I A        +   +
Sbjct: 1665 AKLTKDSLRDIQNAPKLLALKQLLMDCGIGSPPALAADSQKSELIDAPTDTSGTFSQHRV 1724

Query: 72   IVAYHFNSDLARLQ------------KAFPQGRT-LDKDPCTIQEWN-EGKIPLLFAHPA 117
            ++       L  ++                 G T  +K    +Q +N +  I  L     
Sbjct: 1725 LIFCQMKQMLDIIETDLFKPHMPSVTYMRLDGSTDANKRHAIVQTFNSDPSIDCLLLTTH 1784

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G GL L  G + ++F    W+  +  Q ++R       + G K+ V VY LI + T++
Sbjct: 1785 VGGLGLTLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITKGTLE 1838

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E ++   R K  I + ++N
Sbjct: 1839 EKIMGLQRFKLNIANSIVN 1857


>gi|296220127|ref|XP_002756186.1| PREDICTED: DNA excision repair protein ERCC-6 [Callithrix jacchus]
          Length = 1490

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 828 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 885

Query: 91  GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE K I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 886 TTTIASRQPLITRYNEDKSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 944

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 945 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|219121827|ref|XP_002181260.1| imitation switch isoform 1, alias nucleosome remodeling factor 140
           kDa subunit [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407246|gb|EEC47183.1| imitation switch isoform 1, alias nucleosome remodeling factor 140
           kDa subunit [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1023

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL- 94
           G  Y D    W+  +  K++ +  ++   +A  + +++       L  L+  F   +   
Sbjct: 444 GPPYIDGPHLWE--NSGKMQLMHKLLPKLQAKGSRVLIFCQMTRVLDILEDYFRLTKLEY 501

Query: 95  ---------DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    ++    + E+N              + G G+NL    +I++ +   W+ + 
Sbjct: 502 CRIDGNTDGERRDSQMDEFNAEGSSKFAFLLSTRAGGLGINL-ATADIVILYDSDWNPQV 560

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q ++R       + G  + V V+  + + T++E +++R   K  +   ++ 
Sbjct: 561 DLQAMDR-----AHRIGQTKPVQVFRFVTEGTVEEKIIERADRKLFLDAAVIQ 608


>gi|328777395|ref|XP_003249333.1| PREDICTED: TATA-binding protein-associated factor 172-like [Apis
            mellifera]
          Length = 1870

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++     + L  ++K                      +    +  +N +  I +L  
Sbjct: 1657 HRALIFCQLKAMLDIVEKDLLRIHLPTVTYLRLDGSVPAAQRHSVVARFNADPSIDVLLL 1716

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI ++
Sbjct: 1717 TTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRS 1770

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K    + +++
Sbjct: 1771 TVEEKIMGLQKFKLLTANTVIS 1792


>gi|326478017|gb|EGE02027.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1113

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 428 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 487

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 488 EHLI--DNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 545

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    K  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 546 AHEDRIQAIDEYNRPGSKKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 604

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|320590071|gb|EFX02516.1| chromatin remodeling complex subunit [Grosmannia clavigera kw1407]
          Length = 1931

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 34/207 (16%)

Query: 23   FNSASKTVKCLQL----ANGAVYYD--EEKHWKEVH--------DEKIKALEVIIEK--A 66
               +S     +QL     +  +Y D  EEK   +            K+  L +++ K  A
Sbjct: 1189 AERSSLNNILMQLRKCLCHPFIYNDAIEEKTVDQATMVQNLVEASSKLVLLRIMLPKLKA 1248

Query: 67   NAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCT-----IQEWNEGKIPLL--FA 114
                +++   F   L  ++        P GR             I  +N    PL     
Sbjct: 1249 RGRRVLLFSQFLHQLDIVEDFLTILGLPYGRLDGSMSSMEKQKRIDAFNAPDSPLFAFLL 1308

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++     ++  +  Q       +R  + G K  V  + L+ ++
Sbjct: 1309 STRAGGVGINL-ATADTVIVMDPDFNPHQDMQA-----FSRAHRIGQKNHVLCFQLVTKD 1362

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            +++E ++Q  R K  +   L+ ++  E
Sbjct: 1363 SVEEKIMQVGRKKMALDHALIESMDAE 1389


>gi|298710085|emb|CBJ31801.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1032

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   TI  +N   KI +      + G G+ L  G + ++     W+  +  Q ++R    
Sbjct: 33  ERQHTIARFNANNKISVCLVSTGAGGTGITLT-GADRVILSDPSWNPADDMQAVDR---- 87

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKE 201
              + G KR V VY +IA  T++E + ++   K  ++  ++   +K++
Sbjct: 88  -AYRIGQKRDVIVYRMIAAGTVEEKMYEKQIFKDGLRRTVMGGTVKRK 134


>gi|241954006|ref|XP_002419724.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223643065|emb|CAX41939.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1102

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNS--DLARLQK--------AFPQGRTLDKDPCTIQEWN 105
            ++ +  +  K     +IV   F S  DL  L           +    ++D     I+E+ 
Sbjct: 932  VEMILDLFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFY 991

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L     +   GL L    ++++    +W+    +Q + R       + G  R V
Sbjct: 992  QSNKNVLLLSLRAGNAGLTLTCANHVIIM-DPFWNPFVEEQAMGR-----AHRIGQTREV 1045

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FV+ ++   T++  +++   +K  + +  L+
Sbjct: 1046 FVHRVLIAGTVENRIMELQESKKHLINSALD 1076


>gi|146423386|ref|XP_001487622.1| hypothetical protein PGUG_00999 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 542

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 35/213 (16%)

Query: 2   KQYHK-----FQRELYCDLQG---------ENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
           K Y +       +++  + +          E++E  +       C++    + Y  E+K 
Sbjct: 314 KLYDEEKLKQMAKDIMKEPEYVEANEQYIYEDMEVMSDYELNNLCVKFPTLSKYVLEDKE 373

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------D 95
           W  ++  K+  L   I++  A    ++V   F   L  L+K    G             D
Sbjct: 374 W--LNSGKVGLLMDHIKEIMARKERVLVFSLFTQMLDILEKVLTIGNIKFLRLDGQTSVD 431

Query: 96  KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + +   IP+      + G G+NL    N+++F       +      +R    
Sbjct: 432 TRQDLIDTFYDDDTIPVFLLSTKAGGFGINLVAANNVVIFD------QSFNPHDDRQAED 485

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R  + G    V V   I++ TI+E +LQ    K
Sbjct: 486 RAHRVGQTSEVLVTRFISKGTIEENMLQLAENK 518


>gi|70993276|ref|XP_751485.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66849119|gb|EAL89447.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159125581|gb|EDP50698.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1111

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 425 EMQVKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 484

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L         +     G T
Sbjct: 485 EHLV--YNSGKMVILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTT 542

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 543 AHEDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 601

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 602 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 647


>gi|169617355|ref|XP_001802092.1| hypothetical protein SNOG_11855 [Phaeosphaeria nodorum SN15]
 gi|160703388|gb|EAT80899.2| hypothetical protein SNOG_11855 [Phaeosphaeria nodorum SN15]
          Length = 1950

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLD--------KDPCTIQEWN-E 106
             + E  +    ++       L       LQK  P  + +         K    + ++N +
Sbjct: 1715 DLPEAVSQHRALIFCQMKEMLDMVQNTVLQKMLPSVQFMRLDGTVEATKRQEIVNKFNSD 1774

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V 
Sbjct: 1775 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVN 1828

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  +   ++N
Sbjct: 1829 VYRIVTRGTLEEKILSLQRFKIDVASTVVN 1858


>gi|226290256|gb|EEH45740.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb18]
          Length = 1521

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG---- 91
           G    +E          K+  L+ ++ K   +   +++       L  L           
Sbjct: 759 GKTGREEMMRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAY 818

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD          +I+ +N              + G G+NL    + +V F   W+ + 
Sbjct: 819 QRLDGTIAAGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA 877

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 878 DLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 916


>gi|71033369|ref|XP_766326.1| DNA repair protein Rad54 [Theileria parva strain Muguga]
 gi|68353283|gb|EAN34043.1| DNA repair protein rad54, putative [Theileria parva]
          Length = 786

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 63  IEKANAAPIIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQEWNEGKIP-- 110
           I +     +++  ++   L    RL K             ++ K    +  +N+      
Sbjct: 481 IRRHGNDRVVIISNYTQTLDLFERLCKECNYPFERLDGTTSIKKRHKLVTTFNDPNSNSF 540

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N LV F   W+    +Q + R+      + G  +  ++Y  
Sbjct: 541 IFLLSSKAGGCGINL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQTKVCYIYRF 594

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
            +  TI+E + QR   K  +  +L+
Sbjct: 595 FSTGTIEEKIYQRQICKDGLSSMLV 619


>gi|326481938|gb|EGE05948.1| dsDNA-dependent ATPase [Trichophyton equinum CBS 127.97]
          Length = 1004

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 645 KRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 702

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 703 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|326473366|gb|EGD97375.1| dsDNA-dependent ATPase [Trichophyton tonsurans CBS 112818]
          Length = 922

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 645 KRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 702

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 703 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|302499754|ref|XP_003011872.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
 gi|291175426|gb|EFE31232.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 645 KRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 702

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 703 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|225682812|gb|EEH21096.1| chromodomain helicase hrp1 [Paracoccidioides brasiliensis Pb03]
          Length = 1521

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG---- 91
           G    +E          K+  L+ ++ K   +   +++       L  L           
Sbjct: 759 GKTGREEMMRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAY 818

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD          +I+ +N              + G G+NL    + +V F   W+ + 
Sbjct: 819 QRLDGTIAAGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA 877

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             Q + R       + G  + V VY L++++T++E VL+R R K
Sbjct: 878 DLQAMAR-----AHRIGQTKPVSVYRLVSKDTVEEEVLERARNK 916


>gi|151941201|gb|EDN59579.1| hypothetical protein SCY_3612 [Saccharomyces cerevisiae YJM789]
          Length = 722

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
              +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 550 TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 609

Query: 99  CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 610 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 664

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 665 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 702


>gi|189197581|ref|XP_001935128.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981076|gb|EDU47702.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1676

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L  ++   +A     ++       L  L++             G 
Sbjct: 1359 PDKRLLQYDCGKLQRLATLLRDLQAGGHRALIFTQMTKVLDILEQFLNIHGYRYLRLDGS 1418

Query: 93   TLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N + +I        S G G+NL  G + ++F+ L W+       +++
Sbjct: 1419 TKIEQRQILTDRFNTDPRILCFILSSRSGGLGINLT-GADSVIFYDLDWN-----PAMDK 1472

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1473 QCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1518


>gi|15898473|ref|NP_343078.1| hypothetical protein SSO1655 [Sulfolobus solfataricus P2]
 gi|13814902|gb|AAK41868.1| Helicase of the snf2/rad54 family (carboxy end fragment),
           hypothetical [Sulfolobus solfataricus P2]
          Length = 124

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  N   +  +     + G G+NL    N ++ F  WW+     Q  +R+      + G 
Sbjct: 11  KFQNNPSVKFIVLSVKAGGFGINLT-SANRVIHFDRWWNPAVEDQATDRV-----YRIGQ 64

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 65  TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 100


>gi|261197521|ref|XP_002625163.1| TBP associated factor [Ajellomyces dermatitidis SLH14081]
 gi|239595793|gb|EEQ78374.1| TBP associated factor [Ajellomyces dermatitidis SLH14081]
 gi|239606789|gb|EEQ83776.1| TBP associated factor [Ajellomyces dermatitidis ER-3]
          Length = 1902

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K+Y + Q+      +  +I     A K      L       D         + ++     
Sbjct: 1624 KRYDEIQKS--LAGKNSHIRDVAHAPKLTALRDL-----LVDCGIGVDPSTEGELDTGAS 1676

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        +V       L  +Q                       K    + ++N + 
Sbjct: 1677 YVSP---HRALVFCQMKEMLDIVQNDVLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDP 1733

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1734 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1787

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1788 YRLITRGTLEEKILNLQRFKIDVASTVVN 1816


>gi|327295002|ref|XP_003232196.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
 gi|326465368|gb|EGD90821.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
          Length = 923

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 646 RRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 703

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 704 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 743


>gi|302653548|ref|XP_003018598.1| hypothetical protein TRV_07389 [Trichophyton verrucosum HKI 0517]
 gi|291182255|gb|EFE37953.1| hypothetical protein TRV_07389 [Trichophyton verrucosum HKI 0517]
          Length = 1104

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 419 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNVVMQLRKCCNHPYLFEGAEPGPPYTTD 478

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 479 EHLI--DNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 536

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 537 AHEDRIQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 595

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 596 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 641


>gi|66812364|ref|XP_640361.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60468377|gb|EAL66383.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1640

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 28/172 (16%)

Query: 47   HWKEVHDEKIKALE-----VII--EKANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
                +   K+K L       +I  E       ++   + S L  ++++  Q         
Sbjct: 1447 KIDSLFSTKVKTLLGDIQNDLIDNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHY 1506

Query: 92   -------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                       KD    Q   +  + ++     S G GLNL    N +     WW+    
Sbjct: 1507 VRYDGRCSHQQKDKAIKQLNEDDDVRVMLVSLKSGGVGLNLTR-ANRVYMVDPWWNEASE 1565

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q   R+      + G  R VFV   I  N+I+  +L+   +K+ I + LL+
Sbjct: 1566 VQAEGRV-----HRIGQTREVFVKRYIMNNSIEIRILELQESKNEIANALLS 1612


>gi|301122241|ref|XP_002908847.1| DNA repair and recombination protein RAD54 [Phytophthora infestans
           T30-4]
 gi|262099609|gb|EEY57661.1| DNA repair and recombination protein RAD54 [Phytophthora infestans
           T30-4]
          Length = 1076

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LDKDPCTIQEWN 105
           +  L   + K     I++  ++   L  +     ++  P  R        K    +  +N
Sbjct: 552 LDRLMFSMRKTTTDRIVIVSNYTQTLDVVSTLCQERHLPFVRLDGTTSAKKRKKLVDTFN 611

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E       L     + G GLNL  G N LV F   W+    +Q   R+      + G K+
Sbjct: 612 EPTTNSFALLLSSKAGGCGLNL-IGANRLVLFDPDWNPATDKQAAARVW-----REGQKK 665

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +VY  +A  T++E + QR  +K  +Q+++
Sbjct: 666 MCYVYRFLATGTLEEKIFQRQLSKEGLQNIV 696


>gi|221120739|ref|XP_002163131.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1024

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 40/229 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--EEKH 47
           K Y      QR+ Y  L  ++I+  N A K  +       +QL    N    +D  E   
Sbjct: 378 KIYVGLSVMQRQWYTKLLMKDIDIVNGAGKVDRMRLLNILMQLRKCCNHPYLFDGAEPGP 437

Query: 48  WKEVHDEKIK------ALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQ 90
                   +        L+++++K     + +++       L  L         Q     
Sbjct: 438 PYTTDQHLVDNCGKMIVLDMLLKKLKDSGSRVLIFSQMTRVLDILEDYAMWRGYQYCRLD 497

Query: 91  GRTLDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G+T  +     I E+N       L      + G G+NL    ++++ +   W+ +   Q 
Sbjct: 498 GQTPHELRTAQINEFNAPGSDKFLFMLSTRAGGLGINL-ATADVVIMYDNDWNPQVDLQA 556

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  R  + G  + V V+  I +NTI+E +++R   K  +  +++ 
Sbjct: 557 -----QDRAHRIGQTKQVHVFKFITENTIEERIIERAEIKLRLDAVVIQ 600


>gi|325088122|gb|EGC41432.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus H88]
          Length = 1112

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 408 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 467

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 468 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 525

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 526 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 584

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 585 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 638


>gi|123477045|ref|XP_001321692.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121904523|gb|EAY09469.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1425

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW-NEGKIPLLF 113
           KA+   +++       L  L+          +        +     I+ + N+    +  
Sbjct: 586 KADGHKVLIFSQMVKVLDILEDYIAIKGYKCERIDGSVAENDRQAAIERFGNDPDAFIFL 645

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ +   W+ +   Q   R       + G  + V VY L+ +
Sbjct: 646 LCTKAGGVGINLT-AADTVIIYDSDWNPQNDIQAQSRC-----HRIGQTQKVKVYRLVTR 699

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T +  +L R   K  +   LL++++
Sbjct: 700 GTYELDMLDRASKKLGLDHALLDSVE 725


>gi|323508354|emb|CBQ68225.1| related to RAD5-DNA helicase [Sporisorium reilianum]
          Length = 1377

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGR 92
              +Y              +  L  +         ++   F S L  +     +  F   R
Sbjct: 1188 STIYVRNNVRSSTKVTALLDHLNALRAAEGPFKGVIFSQFTSFLDLIEPVLTRYRFRFLR 1247

Query: 93   TLDKDPCTIQE-----WNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                 P  ++E     +       +  L      + G GLNL    N +     WW+   
Sbjct: 1248 LDGSTPQKVREKLLVEFQSASSATETLLFLISLKAGGVGLNLT-AANKIWLLDFWWNSSI 1306

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q I+RI      + G  R V V+  + +++I+  +L   + K  +
Sbjct: 1307 ENQAIDRI-----HRLGQTRPVSVFRYLVKDSIENRILLIQKRKDML 1348


>gi|297491621|ref|XP_002698997.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6-like [Bos taurus]
 gi|296472015|gb|DAA14130.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6-like [Bos taurus]
          Length = 1006

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 298 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDG 355

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +      I  +NE   I +        G G+NL  G N ++ +   W+     Q  E
Sbjct: 356 TTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARE 414

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 415 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 461


>gi|224099763|ref|XP_002311608.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851428|gb|EEE88975.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1131

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 92/216 (42%), Gaps = 26/216 (12%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEV----HDEK 55
           K Y++   E+    LQ  + ++ +  + T++  +  N   ++  +   W++        K
Sbjct: 669 KVYYQQVTEMGRVGLQNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYNMWRKDEIMRASGK 728

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQE 103
            + L+ ++ K +     +++       +  L         +     G T  ++    +++
Sbjct: 729 FELLDRLLPKLHATDHRVLLFSQMTRLMDILEIYLQLHDYKYLRLDGSTKTEERGTLLKK 788

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N    P  +      + G GLNLQ   + ++ F   W+ +  QQ  +R       + G 
Sbjct: 789 FNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQ 842

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K+ V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 843 KKEVRVFVLVSVGSVEEVILERAKQKKGIDAKVIQA 878


>gi|209882027|ref|XP_002142451.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
 gi|209558057|gb|EEA08102.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
          Length = 1877

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKD-PCTIQEWNEGKIP--LL 112
            KA    ++V   F   L  L++             G     D    I  +N  +    + 
Sbjct: 1371 KAEGHKVLVFSQFIQTLTLLEELVEHHKWGYERLDGSIRGSDRSAAITRFNADESDKFIF 1430

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ F   W+ +   Q   R       + G  R V VY LI 
Sbjct: 1431 LLSTRAGGLGINLT-SADTVIIFDSDWNPQNDVQACAR-----AHRIGQTRDVKVYRLIT 1484

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
              T +  + +R   K  +   + 
Sbjct: 1485 ARTYEAEMFERASRKLGLNTAVF 1507


>gi|124487019|ref|NP_001074690.1| DNA excision repair protein ERCC-6 [Mus musculus]
 gi|189442813|gb|AAI67234.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [synthetic construct]
          Length = 1481

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            HW+     K+  +E +++        +++       L  L+                 T
Sbjct: 829 GHWRR--SGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTT 886

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +      I ++NE   I +        G G+NL  G N ++ +   W+     Q  ER  
Sbjct: 887 IASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW 945

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 946 -----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 989


>gi|297192312|ref|ZP_06909710.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719707|gb|EDY63615.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 775

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPI 71
           +    + EA+  A  +   + +   A Y   EK        K++ L  +++   AN   +
Sbjct: 484 EFSAADAEAYREAVASGNFMAMRRAA-YARPEK------SAKLERLRELVDDAAANGLKV 536

Query: 72  IVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
           +V  +F   LA + +A  +G            +    + E+       +L A   + G G
Sbjct: 537 VVFSYFRDVLAAVGEALDEGVFGPVSGSVPAARRQQLVDEFTAAPGHAVLLAQIEAGGVG 596

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ   ++++         + +  +E   V R  + G  RAV V+ L+A N++D+ +L 
Sbjct: 597 LNLQ-AASVVIICEP-----QVKPTMEHQAVARAHRMGQVRAVQVHRLLATNSVDQRMLD 650

Query: 183 RLRTKSTIQDL 193
            L +KS + D 
Sbjct: 651 ILESKSRLFDA 661


>gi|145602035|ref|XP_359538.2| hypothetical protein MGG_05239 [Magnaporthe oryzae 70-15]
 gi|145010485|gb|EDJ95141.1| hypothetical protein MGG_05239 [Magnaporthe oryzae 70-15]
          Length = 1163

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ ++ +++  K      ++       L  L+    +          G+T  KD   
Sbjct: 698 SGKMQVVKALLQMWKKFGHKTLLFSQGTQMLDILEDFVRKQDDITYLRMDGKTAIKDRQA 757

Query: 101 I--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  Q  N   I L        G G NL  G + ++ +   W+     Q  ER       +
Sbjct: 758 MVDQFNNSPGIDLFLLTTKVGGLGTNLT-GADRVIIYDPDWNPSTDVQARERAW-----R 811

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+ V +Y L+   TI+E + QR   K  + + +L
Sbjct: 812 LGQKKEVTIYRLMTAGTIEEKIYQRQIFKQFLTNKVL 848


>gi|198430685|ref|XP_002130660.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 1867

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN-EGKIPL-L 112
           K N   +++       L  +Q+     R            D     +  +N EG      
Sbjct: 824 KENGHRVLIFSQMVRMLDIIQEYLVVRRLQFQRLDGSVSSDLRRRALDHFNAEGSEDFCF 883

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+     Q   R       + G K  V +Y L+ 
Sbjct: 884 LLSTRAGGLGINL-ATADTVIIFDSDWNPMNDLQAQAR-----AHRIGQKNQVNIYRLVC 937

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
             +++E +++R + K  +  L++  +
Sbjct: 938 AGSVEEDIIERAKKKMVLDHLVIQRM 963


>gi|316972508|gb|EFV56185.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1052

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 95   DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + ++N  +    ++     + G GLNL  GGN L    L W+  +  Q  +RI 
Sbjct: 913  EERGERMAKFNRIDSDPEVMLLSLTAGGVGLNLT-GGNHLFLMDLHWNPAQELQASDRIN 971

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G  R V +Y  +   TI+E VL+    K  + + +L+ + ++
Sbjct: 972  -----RIGQTRDVVIYKTVCSGTIEEKVLKLQEEKLALAESVLSGVARQ 1015


>gi|67901102|ref|XP_680807.1| hypothetical protein AN7538.2 [Aspergillus nidulans FGSC A4]
 gi|40742928|gb|EAA62118.1| hypothetical protein AN7538.2 [Aspergillus nidulans FGSC A4]
 gi|259483857|tpe|CBF79592.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1132

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEV-HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQG------ 91
            +Y +      +V    KI+ L  I+  +A     IV   F S L +++    +       
Sbjct: 885  IYLNPGDDENQVLPSTKIRQLMKILRREAPDFKFIVFSVFTSMLDKIEPFLSRAGIGYAR 944

Query: 92   -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 R   ++    +  N     +L     +   GLNL    + +V    +W+    +Q
Sbjct: 945  YDGSMRNDLREASLEKLRNHRGTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQ 1003

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      +      V +Y +I ++T++E +L     K  + ++ +  
Sbjct: 1004 AIDRV-----HRLNQTVDVKIYKMIIKDTVEERILDLQERKRELANVTIEG 1049


>gi|195054315|ref|XP_001994071.1| GH17632 [Drosophila grimshawi]
 gi|193895941|gb|EDV94807.1| GH17632 [Drosophila grimshawi]
          Length = 1050

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
               K+  +  I++     +   +I+   + S L  L+    Q +           +    
Sbjct: 879  PSTKMLKVLEILKTNILKSDDKVIIVSQWTSMLDILRDLLQQEKLAALSLNGSIPVKNRQ 938

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+N+ +    +L     + G GLNL  G N L+   L W+ +   Q  +RI     
Sbjct: 939  NIVNEFNDARNSKRILLLSLTAGGVGLNL-IGANHLILLDLHWNPQLEAQAQDRI----- 992

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G K+ VF+Y ++   T+++ +      K  + + +L  
Sbjct: 993  YRVGQKKDVFIYKIVCLETVEQRIKALQDRKMALAEGVLTG 1033


>gi|327281442|ref|XP_003225457.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 1441

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG-KIPLLFAH 115
               +++       L  ++    Q            T+      I  +NE   I +    
Sbjct: 834 QGHRVLLFTQSRQMLHIIEAFLKQRSYSYVKMDGTTTVASRQPLISRFNEDTSIFIFLLT 893

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G + ++ +   W+     Q  ER       + G  + V VY L+   T
Sbjct: 894 TRVGGLGVNLT-GADRVIIYDPDWNPSTDTQARERAW-----RIGQTKEVTVYRLLTAGT 947

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 948 IEEKIYHRQIFKQFLTNRILKDPKQR 973


>gi|322707220|gb|EFY98799.1| chromatin-remodeling complex ATPase chain isw-1 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1679

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
              K++ L  I++ A  +   ++V  H    L  L   F + +           + K    
Sbjct: 1163 STKVELLIQILDDAKRSKDKVLVFSHSIPTLNYLSGLFQEQKRLFSRLDGKTPIAKRQEE 1222

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I+++N     +      + G GLN+Q G N +V     W+    QQ I R       + G
Sbjct: 1223 IKKFNANHTEVYLISTRAGGVGLNIQ-GANKVVILDSKWNPVHEQQAIGR-----SYRIG 1276

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V VYY +   T ++ +  R   K+ +   +++
Sbjct: 1277 QSKPVSVYYFVTAGTFEQDLHGRAIFKTQLATRVVD 1312


>gi|134115669|ref|XP_773548.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256174|gb|EAL18901.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 899

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 25/180 (13%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLA----RL 84
              L+L +    Y      + ++  KI  L   +         +V   F S L     RL
Sbjct: 695 GSILRLPSDESLYLPSSQARSINSAKIDELVKYLRIFPRDDKTLVFSQFTSFLDCVGVRL 754

Query: 85  QKAFPQGRTLD------KDPCTIQEWNEG-------KIP-LLFAHPASCGHGLNLQYGGN 130
           ++   +    D      +    I+ + E        + P ++     S   GLNL    N
Sbjct: 755 EQEGVKFVRFDGRMPGKQRTEVIKAFQEPVKGDDDEEAPTVMLISLKSGAVGLNLTAASN 814

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     WW     Q  IE   + R  + G K+ V V+ LIA++TI+  VL   + K  +
Sbjct: 815 -VFLCDPWW-----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVLDIQKRKDAM 868


>gi|322694287|gb|EFY86121.1| ISWI chromatin-remodeling complex ATPase ISW2 [Metarhizium acridum
           CQMa 102]
          Length = 870

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAH 115
              +++   F + L  L+                    D     I ++N      L    
Sbjct: 649 GHKVLLFSQFKTQLDILEDYSRELRGWNVCRIDGSVPQDSRRQQIHDFNNDADYNLFLLS 708

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   ++ ++  Q  +R       + G  R V VY L  ++T
Sbjct: 709 TRAGGQGINL-ASADTVILFDSDFNPQQDLQAQDRC-----HRIGQTRPVIVYRLATKDT 762

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 763 VEESLLMSADAKRRLEKLVI 782


>gi|225682466|gb|EEH20750.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb03]
          Length = 1605

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 998  ASSKLQLLEMLVPKLQERGHRVLIFSQFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQK 1057

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1058 QIDDYNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1111

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1112 RIGQQKKVLVFQLVTKASAEEKIMQIGKKKLALDQVLIEHMDAE 1155


>gi|225557819|gb|EEH06104.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Ajellomyces capsulatus G186AR]
          Length = 1423

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGA----VYYDEEKHWKEVHD- 53
            K Y +     + +  D +G        ++  ++  +L N         DE    +  +D 
Sbjct: 782  KLYKQLATHNKLIVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 841

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                  K + L+ I+   +A+   +++ +              L  ++     G T   D
Sbjct: 842  IWRTAGKFELLDRILPKFQASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 901

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +E+N              + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 902  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 955

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 956  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1000


>gi|155371796|ref|YP_001427330.1| hypothetical protein ATCV1_Z849R [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155125116|gb|ABT16983.1| hypothetical protein ATCV1_Z849R [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 456

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 17  GENIEAFNSASKTVKCLQLA---NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           G++          ++  Q     N   YYD+   + E    K+K +E  I  +     I+
Sbjct: 243 GDSQARMEVLKIILRLRQCTGNINMVPYYDDPDTFYEGESTKLKMMEEDILNSPMQKTII 302

Query: 74  AYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
             HF+ ++  +                +     +        N+ +   L     + G G
Sbjct: 303 FTHFHKEMDYIAAMLKSHGFASVRLDGRVSAKGRISSVESFNNDPECNFLLVQIDAGGVG 362

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ    I +  S+ W+     Q I R       + G    V V  LI  +T+D+ ++ 
Sbjct: 363 LNLQVAKRIYI-TSVHWNGTAEIQAIAR-----SYRIGQDSQVTVKRLIINDTVDDAIVG 416

Query: 183 RLRTKSTIQDLLLN 196
             + K      LL 
Sbjct: 417 IQQQKLECAAELLE 430


>gi|115534248|ref|NP_499654.3| yeast Swi2/Snf2-Like family member (ssl-1) [Caenorhabditis elegans]
 gi|122064843|sp|Q9NEL2|SSL1_CAEEL RecName: Full=Helicase ssl-1; AltName: Full=Swi/snf2-like protein 1
 gi|45451721|gb|AAS65429.1| Swi/Snf family ATPase [Caenorhabditis elegans]
 gi|95101929|emb|CAC35851.3| C. elegans protein Y111B2A.22a, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 2395

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +++    ++ +N + K+        S G G+NL  G + ++F+   W+     Q  +R  
Sbjct: 1240 VEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC- 1297

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1298 ----HRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAID 1337


>gi|19115158|ref|NP_594246.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74675924|sp|O13762|YF2C_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C17A2.12
 gi|2414584|emb|CAB16565.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 897

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK-I 109
            II       I+V   F+  L  +                    ++   ++  +N  K +
Sbjct: 734 DIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDV 793

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++     +   GLNL    N ++    +++     Q I+R+      + G ++ V VY 
Sbjct: 794 LVMLVSLKAGSVGLNLTI-ANHVILQEPFYNPSIEDQAIDRV-----HRLGQQKPVTVYR 847

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I ++TI+E ++   R K  +    L++
Sbjct: 848 FITKDTIEERIVSVQRKKRQLVKEALDS 875


>gi|58261298|ref|XP_568059.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57230141|gb|AAW46542.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 900

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 25/180 (13%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLA----RL 84
              L+L +    Y      + ++  KI  L   +         +V   F S L     RL
Sbjct: 696 GSILRLPSDESLYLPSSQARSINSAKIDELVKYLRIFPRDDKTLVFSQFTSFLDCVGVRL 755

Query: 85  QKAFPQGRTLD------KDPCTIQEWNEG-------KIP-LLFAHPASCGHGLNLQYGGN 130
           ++   +    D      +    I+ + E        + P ++     S   GLNL    N
Sbjct: 756 EQEGVKFVRFDGRMPGKQRTEVIKAFQEPVKGDDDEEAPTVMLISLKSGAVGLNLTAASN 815

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     WW     Q  IE   + R  + G K+ V V+ LIA++TI+  VL   + K  +
Sbjct: 816 -VFLCDPWW-----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVLDIQKRKDAM 869


>gi|328352490|emb|CCA38889.1| chromodomain-helicase-DNA-binding protein 1 [Pichia pastoris CBS
           7435]
          Length = 1387

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 665 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLTFKGYSFQRLDGTVPSARRRV 724

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 725 AIDHFNADGSQDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 778

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 779 RIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 817


>gi|254567734|ref|XP_002490977.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
 gi|238030774|emb|CAY68697.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
          Length = 1387

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 665 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLTFKGYSFQRLDGTVPSARRRV 724

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 725 AIDHFNADGSQDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 778

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 779 RIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 817


>gi|300121090|emb|CBK21472.2| unnamed protein product [Blastocystis hominis]
          Length = 1183

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIPLL--F 113
           A    +++   F + L  L++             G    +     I+ +N+    +    
Sbjct: 498 AEGHRVLIFSQFTTMLDILERYLRLAGLSYTRIDGSVRGNAREEAIRTFNDENSNMFCFL 557

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+ L    + ++ F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 558 LSTRAGGVGITLTT-ADTVIIFDSDWNPQNDVQAQARC-----HRIGQTKAVRVYRLITR 611

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            T +  + QR   K  ++  ++
Sbjct: 612 GTYEAAMFQRASLKLGLEQAVM 633


>gi|224133490|ref|XP_002328055.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222837464|gb|EEE75843.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 843

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEK--ANAAP 70
           +   +  +A  +++     + L  G    +         H  K++ALE ++    +    
Sbjct: 474 EPDKQKKDAEFASAVFGADVDLVGGNAQSENFMGLSDVKHCGKMQALEKLMFSWASRGDK 533

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           I++  +    L  L+K                  +     + ++N      +      + 
Sbjct: 534 ILLFSYSVRMLDILEKFLIRKGHSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAG 593

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    N +V F   W+  +  Q        R  + G KR V V+ L+A  + +EL
Sbjct: 594 GLGLNL-VSANRVVIFDPNWNPAQDLQA-----QDRSFRFGQKRHVVVFRLLAAGSFEEL 647

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V  R   K  + ++ ++ 
Sbjct: 648 VYSRQVYKQQLSNIAVSG 665


>gi|71988744|ref|NP_499301.2| hypothetical protein M03C11.8 [Caenorhabditis elegans]
 gi|31043816|emb|CAA88960.2| C. elegans protein M03C11.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|31043823|emb|CAA15960.2| C. elegans protein M03C11.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 989

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-E 106
            L  I  +     +++   F S L  L+          K       +      I E+N  
Sbjct: 761 MLPEI--QKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLS 818

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G G+NL    +I++   + ++    +Q  +R       + G ++ V 
Sbjct: 819 KDLFVFLLSTRAGGLGINLTSANHIIIH-DIDFNPYNDKQAEDRC-----HRMGQEKPVH 872

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V  L+++ T++  +L   + K  ++  + + +K +
Sbjct: 873 VTRLVSKGTVEVGMLALAKKKLQLEKQVTDGVKGQ 907


>gi|38567839|emb|CAE05788.2| OSJNBb0020J19.17 [Oryza sativa Japonica Group]
          Length = 1634

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------P 89
            D E    +    K+  +  +++   +    +++       L  +Q+A            
Sbjct: 581 DDVELQVGQDVSCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRID 640

Query: 90  QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + +    ++++ EG   P+        G GL L     ++V     W+     Q +
Sbjct: 641 GTTKISERERIVKDFQEGPGAPIFLLTTQVGGLGLTLTKAARVIV-VDPAWNPSTDNQSV 699

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + V VY L+   TI+E + +    K  +
Sbjct: 700 DR-----AYRIGQMKDVIVYRLMTSGTIEEKIYKLQVFKGAL 736



 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 23/166 (13%)

Query: 40   VYYDEEKHWKEVHDEK----IKALEVIIEKANAAPIIVAYHFNSDLARLQKA-------- 87
            +Y D+     +    K    +  L  ++E+     +++       L  +Q A        
Sbjct: 1242 LYADKRLQIVQGASCKIAFILPLLRNLVEE--GHYVLIFSQTRVMLNLIQDAVSIEGHKF 1299

Query: 88   --FPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    + +    ++++ EG   P+L       G G  L    + ++     W+    
Sbjct: 1300 LRIDGTTKISERKKILKDFQEGLDSPILLLTSHVGGLGNTLTK-ADRVIVVDPAWNPSID 1358

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             Q ++R       + G  + V VY L+   TI+E + ++   K  +
Sbjct: 1359 NQSVDR-----AYRIGQTKDVIVYRLVTCGTIEEKIYKQQIFKGGL 1399


>gi|315054985|ref|XP_003176867.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
           CBS 118893]
 gi|311338713|gb|EFQ97915.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
           CBS 118893]
          Length = 1114

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 428 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 487

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 488 EHLI--DNSGKMVILDKLLTRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 545

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 546 AHEDRIQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 604

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|260584382|ref|ZP_05852129.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
 gi|260157900|gb|EEW92969.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
          Length = 790

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 29/191 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
            ++    EAF+     +K  ++A           +     EKIK +  I ++A  N   +
Sbjct: 573 QIELYESEAFSEKCSVMKLRRMA-----------FLGEDSEKIKQIIDICKEARENGMKV 621

Query: 72  IVAYHFNSD-LARLQKAFPQGRT--------LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
           +V   F +D L RL++  P   +          +    I E+++     +L A   + G 
Sbjct: 622 LVFSFFKTDVLYRLRELVPNTASDILSGDISPARRQEVIDEFSKDSNQTVLLAQIEAGGV 681

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q   NI++     W     QQ I R+      + G  R V VY L+ +++IDE ++
Sbjct: 682 GLNIQ-SANIVILCEPQWKPSTEQQAISRV-----YRMGQTRDVLVYRLLTKDSIDEPIM 735

Query: 182 QRLRTKSTIQD 192
             +  K    D
Sbjct: 736 ALIHKKEVEFD 746


>gi|225682464|gb|EEH20748.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb03]
          Length = 1120

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 418 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 477

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 478 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 535

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 536 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 594

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 595 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 648


>gi|5917753|gb|AAD56021.1|AF181824_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
          Length = 918

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQG----RTLDK------DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +         R LD           +  +N EG         
Sbjct: 426 GNRVLIFSQMVRMLDILAEYLKYRQFPFRRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 485

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 486 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 539

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 540 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 572


>gi|115389796|ref|XP_001212403.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194799|gb|EAU36499.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1503

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
            K+K LE+++ K +     +++   F  +L  ++          +              I 
Sbjct: 912  KLKLLELMLPKLHQRGNRVLIFSQFLDNLNIIEDFLDGLGLRHRRLDGRMTSLEKQKMID 971

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N    P         S G G+NL    + ++     ++  +  Q + R       + G
Sbjct: 972  EYNAEDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRIG 1025

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             K  V V+ L+ + + +E ++Q  + K  +  +L++ +
Sbjct: 1026 QKNKVLVFQLMTRGSAEEKIMQIGKKKMVLDHVLIDRM 1063


>gi|115438260|ref|XP_001218021.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
 gi|114188836|gb|EAU30536.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
          Length = 1418

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  L+     G T   D   + +
Sbjct: 862  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDDRSDLLK 921

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 922  LFNAPGSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAHRIG 975

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+I+E +L+R + K  +   ++ A K
Sbjct: 976  QKNEVRILRLITSNSIEEKILERAQFKLDMDGKVIQAGK 1014


>gi|326531768|dbj|BAJ97888.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1270

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTIQEWNE-GKIPLLFAHPA 117
               IV   +   L      LQ +    R LD           + ++    ++ ++     
Sbjct: 1116 EKAIVFSQWTRMLDLLEVHLQASHVTYRRLDGTMSVAAREKAVNDFKTVPEVSVMIMSLK 1175

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+    ++L+   LWW+     Q ++R       + G  R V V  L  ++T++
Sbjct: 1176 AASLGLNMVAACHVLML-DLWWNPTTEDQAVDR-----AHRIGQTRPVTVSRLTVKDTVE 1229

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1230 DRILALQEKKREM 1242


>gi|326426853|gb|EGD72423.1| transcription activator [Salpingoeca sp. ATCC 50818]
          Length = 1106

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD----- 43
           +K Y    K QR+ Y ++  ++I+  N A +  K       +QL    N    +D     
Sbjct: 464 IKVYVGMSKMQRDWYKNILMKDIDTINGAGRVEKMRLLNILMQLRKCCNHPYLFDGAEPG 523

Query: 44  ---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFP 89
                      +  K+  L+ ++ K  A  + +++       L  L         +    
Sbjct: 524 PPFTTDQHLVDNSGKLVVLDKLLTKLKAQGSRVLIFSQMTRMLDILEDYSWWRGHKYCRL 583

Query: 90  QGRTLDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +     I ++N       +      + G G+NL Y  ++++ +   ++ +   Q
Sbjct: 584 DGSTAHEIRGEMIDDFNRPNSDKFMFLLSTRAGGLGINL-YTADVVIIYDSDFNPQMDLQ 642

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   R  + G  + V V+  I + T++E +++R   K  +  +++ 
Sbjct: 643 A-----QDRAHRIGQTKEVRVFRFITEKTVEERIVERAEMKLRLDAVVIQ 687


>gi|322708300|gb|EFY99877.1| ISWI chromatin-remodeling complex ATPase ISW2 [Metarhizium
           anisopliae ARSEF 23]
          Length = 869

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAH 115
              +++   F + L  L+                    D     I ++N      L    
Sbjct: 648 GHKVLLFSQFKTQLDILEDYSRELRGWNVCRIDGSVPQDSRRQQIHDFNNDADYNLFLLS 707

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   ++ ++  Q  +R       + G  R V VY L  ++T
Sbjct: 708 TRAGGQGINL-ASADTVILFDSDFNPQQDLQAQDRC-----HRIGQTRPVIVYRLATKDT 761

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L     K  ++ L++
Sbjct: 762 VEESLLMSADAKRRLEKLVI 781


>gi|222629845|gb|EEE61977.1| hypothetical protein OsJ_16754 [Oryza sativa Japonica Group]
          Length = 1678

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------P 89
            D E    +    K+  +  +++   +    +++       L  +Q+A            
Sbjct: 626 DDVELQVGQDVSCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRID 685

Query: 90  QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + +    ++++ EG   P+        G GL L     ++V     W+     Q +
Sbjct: 686 GTTKISERERIVKDFQEGPGAPIFLLTTQVGGLGLTLTKAARVIV-VDPAWNPSTDNQSV 744

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R       + G  + V VY L+   TI+E + +    K  +
Sbjct: 745 DR-----AYRIGQMKDVIVYRLMTSGTIEEKIYKLQVFKGAL 781



 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 23/166 (13%)

Query: 40   VYYDEEKHWKEVHDEK----IKALEVIIEKANAAPIIVAYHFNSDLARLQKA-------- 87
            +Y D+     +    K    +  L  ++E+     +++       L  +Q A        
Sbjct: 1286 LYADKRLQIVQGASCKIAFILPLLRNLVEE--GHYVLIFSQTRVMLNLIQDAVSIEGHKF 1343

Query: 88   --FPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    + +    ++++ EG   P+L       G G  L    + ++     W+    
Sbjct: 1344 LRIDGTTKISERKKILKDFQEGLDSPILLLTSHVGGLGNTLTK-ADRVIVVDPAWNPSID 1402

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             Q ++R       + G  + V VY L+   TI+E + ++   K  +
Sbjct: 1403 NQSVDR-----AYRIGQTKDVIVYRLVTCGTIEEKIYKQQIFKGGL 1443


>gi|306419502|emb|CBW48565.1| C. elegans protein Y111B2A.22d, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 2249

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +++    ++ +N + K+        S G G+NL  G + ++F+   W+     Q  +R  
Sbjct: 1094 VEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC- 1151

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  R V +Y LI++ TI+E +L++   K  + +L ++
Sbjct: 1152 ----HRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAID 1191


>gi|323448072|gb|EGB03975.1| hypothetical protein AURANDRAFT_55360 [Aureococcus anophagefferens]
          Length = 1291

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
                  RL    P G         +  +N    I        S G G+NL  G + ++F
Sbjct: 544 WHGHSYLRLDGGTPPGE----RQRLMDRFNSDAFIFCFVLSTRSGGLGINLT-GADTVIF 598

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +   W+     Q ++R       + G  R V +Y LI   T++E +L + R K  +
Sbjct: 599 YDSDWNPAMDAQAMDR-----AHRIGQTRDVHIYRLICIATVEENILLKARQKQKL 649


>gi|242784804|ref|XP_002480466.1| TBP associated factor (Mot1), putative [Talaromyces stipitatus ATCC
            10500]
 gi|218720613|gb|EED20032.1| TBP associated factor (Mot1), putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1894

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +L  GA Y    +        ++K +  I+++     ++ +  +                
Sbjct: 1660 ELDTGASYVSPHRALVF---CQMKEMLDIVQEDVLKKMLPSVQYL--------RLDGSVE 1708

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R  
Sbjct: 1709 ATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-- 1765

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1766 ---AHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVVN 1806


>gi|325095549|gb|EGC48859.1| SNF2-family ATP dependent chromatin remodeling factor [Ajellomyces
            capsulatus H88]
          Length = 1423

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
            K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 782  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 841

Query: 54   -----EKIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                  K + L+ I+   +A+   +++ +              L  ++     G T   D
Sbjct: 842  IWRTAGKFELLDRILPKFQASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 901

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +E+N              + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 902  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 955

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 956  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1000


>gi|331224559|ref|XP_003324951.1| RAD5 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309303941|gb|EFP80532.1| RAD5 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 789

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQG---------- 91
           E           ++ L+ I  +    P   IV   F S L  ++    +           
Sbjct: 549 EGMQSSTKVSRLLELLDEIKAEDTKTPKKTIVFSQFTSFLNLIEPFIKKAGYGYTRYDGA 608

Query: 92  -RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +K     +  ++ K  +L         GLNL    + ++    WW+     Q  +R
Sbjct: 609 KSPDEKTRALEKIKSDPKCTVLLISLKCGSVGLNLTC-CSRVILMDPWWNPSIETQAFDR 667

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKK 200
                  + G +  V  Y +   +TI++ +LQ    K ++ +  L   A KK
Sbjct: 668 -----AHRFGQRDDVKCYKITIADTIEDRILQLQEDKQSLANQALGTEAAKK 714


>gi|302423562|ref|XP_003009611.1| ISWI chromatin-remodeling complex ATPase ISW2 [Verticillium
           albo-atrum VaMs.102]
 gi|261352757|gb|EEY15185.1| ISWI chromatin-remodeling complex ATPase ISW2 [Verticillium
           albo-atrum VaMs.102]
          Length = 846

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHP 116
              +++   F + L  L                  +  +    I  +N      +     
Sbjct: 629 GHKVLIFSQFKTQLDILHDYCTFRKLKICRIDGSVSQAERQEHIDAFNSDSDFKVFLLST 688

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ ++  Q  +R+      + G  + V ++ L  + T+
Sbjct: 689 RAGGQGINLT-AADTVILFDSDWNPQQDLQAQDRV-----HRLGQTKPVVIFRLATKGTV 742

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETIH 204
           ++ +L  +  K  ++ L++   +  T+ 
Sbjct: 743 EDSLLLSVEAKRRLEKLVIKGGQFRTMG 770


>gi|242243119|ref|ZP_04797564.1| phage helicase [Staphylococcus epidermidis W23144]
 gi|242233467|gb|EES35779.1| phage helicase [Staphylococcus epidermidis W23144]
          Length = 413

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y +F RE    L+   + A  ++  T+    L                +  K+  L+ 
Sbjct: 232 KEYDEFIREGIVQLKDRKLIAETASVGTMNARLLCTAF------------NQNKLSMLKD 279

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E      +I+ Y +N +   ++    +       ++ D      +   K  +      
Sbjct: 280 LLESTEDR-LIIFYQYNLEKEAIENVVKELNKPISYINGDLVDKNAYENKKSSITLVQYQ 338

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S   G NLQ   N ++FF L   +   +Q  +R       + G +R  F YY++   T +
Sbjct: 339 SGSFGHNLQK-ANKIIFFGLPNRVSFFEQSRKR-----THRIGQERPCFYYYMLTLGTYE 392

Query: 178 ELVLQRLRTKSTIQDLLL 195
               Q L       D L 
Sbjct: 393 WKNYQTLVDGKDYNDELF 410


>gi|189191218|ref|XP_001931948.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973554|gb|EDU41053.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1242

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQG-----------R 92
                      KI+ L  I+ +      +IV   F S L  ++    +            R
Sbjct: 1005 NDTPSLTPSTKIRQLLAILSQETPSHKVIVFSQFTSMLDLIEPFLRRAHYTYTRYDGSMR 1064

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++    +  ++ K  +L         GLNL    + +V    +W+    +Q I+R+ 
Sbjct: 1065 NDHREASLHKLRSDPKTRVLLCSLKCGSLGLNLT-AASRVVIMEPFWNPFVEEQAIDRV- 1122

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 +      V VY L  +++++E +L+    K  + +  +   K 
Sbjct: 1123 ----HRLNQTVDVTVYRLSIRDSVEERILELQEAKRKLANAAIEGGKA 1166


>gi|67475316|ref|XP_653352.1| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|56470295|gb|EAL47966.1| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 884

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           L  G   +D E   K     K+ A      + +   I++  ++   L  +     +    
Sbjct: 593 LPKGDALWDMELSGKTAFLAKLLAFL----RKHKEKIVIVSNYTETLNFIAHHCKKCGYP 648

Query: 91  ------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      K    +  +N  ++   +      + G GLNL  G N LV F   W+  
Sbjct: 649 YIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGAN-LVMFDPDWNPA 707

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Q + R+      + G K+   +Y  ++  T++E + QR   K  +   ++  
Sbjct: 708 NDEQAMGRVW-----RDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEG 757


>gi|327308272|ref|XP_003238827.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326459083|gb|EGD84536.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1113

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 428 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 487

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 488 EHLI--DNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 545

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 546 AHEDRIQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 604

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|302504248|ref|XP_003014083.1| hypothetical protein ARB_07803 [Arthroderma benhamiae CBS 112371]
 gi|291177650|gb|EFE33443.1| hypothetical protein ARB_07803 [Arthroderma benhamiae CBS 112371]
          Length = 1128

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 419 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 478

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 479 EHLI--DNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 536

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 537 AHEDRIQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 595

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 596 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 641


>gi|242767903|ref|XP_002341462.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724658|gb|EED24075.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1499

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L         Q + LD         
Sbjct: 751 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMRFRGYQYQRLDGTISATNRR 810

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++ +N              + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 811 VAMEHFNAPDSSDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR-----A 864

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  + V VY L++++TI+E VL+R R K
Sbjct: 865 HRIGQTKPVSVYRLVSKDTIEEEVLERARNK 895


>gi|156398438|ref|XP_001638195.1| predicted protein [Nematostella vectensis]
 gi|156225314|gb|EDO46132.1| predicted protein [Nematostella vectensis]
          Length = 614

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEW 104
           +  L  + EK +   +++   ++++L  + + +  GR L            +    ++E+
Sbjct: 396 LDKLLRMFEK-DKCKVLLFS-YSTELLNILENYVIGRGLVFSRLDGQTSPAQRMRVVREF 453

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N    I +      + G GLN   G N+++ F   W+     Q        R  + G +R
Sbjct: 454 NGNRDIFICLVSTKAGGLGLNFT-GANVVIIFDPTWNPSNDLQA-----QDRAYRIGQRR 507

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V  LI+  TI+E++  R   K  + +  ++ 
Sbjct: 508 DVQVLRLISSGTIEEMMYLRQIYKQQMANTAISG 541


>gi|154344042|ref|XP_001567965.1| DNA-dependent ATPase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065299|emb|CAM40727.1| putative DNA-dependent ATPase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1103

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE-----WNEG--KIPLLFA 114
               +++   F S L  L+     + F   R         ++     +N       +   
Sbjct: 489 GKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYERDSQMASFNSPTSDYFIFLL 548

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ   N ++ +   W+ +   Q        R  + G KR+V VY  +   
Sbjct: 549 STRAGGLGINLQ-AANHVILYDSDWNPQMDLQA-----QDRAHRIGQKRSVRVYRFVTDG 602

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E + +R   K  +  +++ 
Sbjct: 603 TLEEKMYRRALKKLYLDAVVVQ 624


>gi|19075201|ref|NP_587701.1| Rad16 homolog Rhp16 [Schizosaccharomyces pombe 972h-]
 gi|3647341|emb|CAA21065.1| Rad16 homolog Rhp16 [Schizosaccharomyces pombe]
          Length = 963

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKA------FPQGRTLDKD 97
              KI+AL      + +K      IV   F S L     RL+KA         G T    
Sbjct: 790 SSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKAR 849

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI+ + N+  I +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 850 AATIEAFSNDINITIFLVSLKAGGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI----- 903

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G KR + V  L  +N+I+  +++    K+ +    ++
Sbjct: 904 HRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATID 943


>gi|170094100|ref|XP_001878271.1| SNF2 superfamily chromatin remodeling protein [Laccaria bicolor
            S238N-H82]
 gi|164646725|gb|EDR10970.1| SNF2 superfamily chromatin remodeling protein [Laccaria bicolor
            S238N-H82]
          Length = 1936

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 24/169 (14%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK-------------A 87
                    D +   L   +E+  +      +++       L  ++               
Sbjct: 1701 GGSAIASADSQKSELIDTVEEPGSSFSQHRVLIFCQMKQMLDIIESDLFKVHMPSVTYMR 1760

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K    +Q +N +  I  L       G GL L  G + ++F    W+  +  Q
Sbjct: 1761 LDGATDAGKRHAIVQTFNSDPSIDCLLLTTHVGGLGLTLT-GADTVIFVEHDWNPMKDLQ 1819

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++R       + G K+ V VY LI + T++E ++   R K  I   ++
Sbjct: 1820 AMDR-----AHRIGQKKVVNVYRLITKGTLEEKIMGLQRFKLNIAHSVV 1863


>gi|327302542|ref|XP_003235963.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326461305|gb|EGD86758.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1053

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  ++++ +     IV   F S L +++     G           R   ++  
Sbjct: 812 TSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 871

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 872 LNRLRNSSGTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 925

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 926 NQTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 963


>gi|312190395|gb|ADQ43195.1| unknown [Eutrema parvulum]
          Length = 763

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
             +   K + L  ++         +++   + S L  L+              G  +   
Sbjct: 585 HVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGTQVTDR 644

Query: 98  PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N  K I        + G GLNL  G + ++   + ++ +  +Q  +R      
Sbjct: 645 QTIVDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQIDRQAEDRC----- 698

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 699 HRIGQTKPVTIF-LVTKSTVDENIYEIAKRKLVLDAAVLES 738


>gi|255077082|ref|XP_002502193.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517458|gb|ACO63451.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 786

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 22/163 (13%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
           A+      ++A+ +    E           +     +  +                 RL 
Sbjct: 521 ATLRTLLREMASNSSGDGERMVVVSGFSAALDLAAGLCAELG-----------LATDRLD 569

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
              P     D     ++ +N G+   ++     + G GLNL  G   LV F   W+    
Sbjct: 570 GRVP----PDARSGLVRNFNAGRGGRVMLLSCVAGGAGLNL-VGACRLVLFDTSWNPAHD 624

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            Q + R+      + G  R V +Y L+A  T++E V QR   K
Sbjct: 625 NQAMARVW-----RDGQTRPVTIYRLLAAGTVEEKVFQRQLLK 662


>gi|212542839|ref|XP_002151574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
 gi|210066481|gb|EEA20574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
          Length = 1497

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L         Q + LD         
Sbjct: 751 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMRFRGYQYQRLDGTISAANRR 810

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++ +N  +           + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 811 VAMEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR-----A 864

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++TI+E VL+R R K
Sbjct: 865 HRIGQTRPVSVYRLVSKDTIEEEVLERARNK 895


>gi|124512694|ref|XP_001349480.1| DNA repair protein rad54, putative [Plasmodium falciparum 3D7]
 gi|23499249|emb|CAD51329.1| DNA repair protein rad54, putative [Plasmodium falciparum 3D7]
          Length = 1239

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPL 111
           I++     +++  ++   L  ++               G  + K    I ++     I +
Sbjct: 622 IKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHKVINDFTHSADIFI 681

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 S G G+NL    N L+     W+    +Q + R+      + G K+  ++Y L 
Sbjct: 682 FLLSSKSGGCGINL-ISSNRLILLDPDWNPANDKQALARVW-----REGQKKICYIYRLF 735

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
              TIDE V QR  +K  + ++++
Sbjct: 736 CTGTIDEKVYQRQISKDGLSNMIV 759


>gi|50288685|ref|XP_446772.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526080|emb|CAG59699.1| unnamed protein product [Candida glabrata]
          Length = 1408

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ------------KAFPQGRTLD 95
               K+     +I    EK+++  II+   F + L  L+            K         
Sbjct: 1230 PSTKMNQCMDVINKVFEKSDSEKIIIFSQFTTFLDLLEHILATRLKISCLKYTGDMNAKV 1289

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     + ++E    +L     +   GL L    ++++    +W+    +Q  +R     
Sbjct: 1290 RSEIISRFYSEEDKRVLLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC---- 1344

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +    R V V+ L  +N++++ +L+  + K  + D  ++A K
Sbjct: 1345 -YRISQTREVTVHRLFIKNSVEDRILELQKLKRDMVDAAMDAKK 1387


>gi|326926799|ref|XP_003209584.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Meleagris gallopavo]
          Length = 1837

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 792 SSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 851

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 852 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 905

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 906 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 946


>gi|239613379|gb|EEQ90366.1| chromodomain helicase [Ajellomyces dermatitidis ER-3]
          Length = 1513

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 778 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 837

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 838 LSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 891

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 892 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 922


>gi|261194801|ref|XP_002623805.1| chromodomain helicase [Ajellomyces dermatitidis SLH14081]
 gi|239588343|gb|EEQ70986.1| chromodomain helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1513

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 778 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 837

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 838 LSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 891

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 892 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 922


>gi|303279448|ref|XP_003059017.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460177|gb|EEH57472.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 811

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC 99
               K + LE ++    +  +  ++   +   L  L+ A            G T  ++  
Sbjct: 636 FDASKTRKLETLLADLKSKGSRPLIFSQWKIVLDILEWALRERGHKFVRLDGSTAVEERQ 695

Query: 100 TI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            I   +N     I        + G GLNL  G +++V     ++ +     I+R    R 
Sbjct: 696 RICDAFNRDGSDIFAFLLSTRAGGQGLNLT-GADVVVIHDCDFNPQ-----IDRQAEDRS 749

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  + V VY L+   T+DE +++    K  +   +L+  K 
Sbjct: 750 HRLGQTKPVTVYRLVTSGTVDERIVEIAEGKLALDAAILSDPKA 793


>gi|148692894|gb|EDL24841.1| mCG6355 [Mus musculus]
          Length = 1330

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
            HW+     K+  +E +++        +++       L  L+                 T
Sbjct: 738 GHWRR--SGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTT 795

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +      I ++NE   I +        G G+NL  G N ++ +   W+     Q  ER  
Sbjct: 796 IASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW 854

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 855 -----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 898


>gi|147790062|emb|CAN75984.1| hypothetical protein VITISV_012188 [Vitis vinifera]
          Length = 399

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCT 100
              K + L+ ++ K       +++       +           ++     G T  ++  T
Sbjct: 4   ASGKFELLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGT 63

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++++N    P  +      + G GLNLQ   + ++ F   W+ +  QQ  +R       
Sbjct: 64  KLKQFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQAEDR-----AH 117

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 118 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 157


>gi|66826589|ref|XP_646649.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60474939|gb|EAL72876.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3247

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 30/220 (13%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVK-----CLQLANGA-VYYDEEKHWKEV--- 51
            K Y   + +    L      +     +K +K       ++ N   ++YD+E +  +    
Sbjct: 1964 KMYDLIKTKGVSKLASSGGADGNPKLAKGLKNTYVQLRKICNHPYLFYDDEYNIDDNLIR 2023

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
            +  K   L+ ++ K  A    +++       +  L+  F           G T  D+   
Sbjct: 2024 YAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGH 2083

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ +N    +  +      + G GLNLQ   + ++ F   W+ +   Q        R  
Sbjct: 2084 LLELFNAPNSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDLQA-----QDRAH 2137

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+ V V  L+  ++++E +L R   K  +   ++ A
Sbjct: 2138 RIGQKQTVRVLRLVTAHSVEESILARANFKKELDKKIIQA 2177


>gi|327356382|gb|EGE85239.1| RSC complex subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 1487

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
            K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 844  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 903

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                  K + L+ I+ K  A+   +++ +              L  ++     G T   D
Sbjct: 904  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 963

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +E+N              + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 964  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 1017

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 1018 RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1062


>gi|299117330|emb|CBN75290.1| similar to helicase, lymphoid-specific isoform 9 [Ectocarpus
           siliculosus]
          Length = 944

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 29/189 (15%)

Query: 32  CLQLANGAVYYDEEKHW-----KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS----- 79
             Q+ +G    D  KH            K++ L  ++ +  +    I++   +       
Sbjct: 740 LHQVCSGF---DSLKHLCLSEETLFTSAKMERLRALLPQLVSEGHRILLFSQWTRLLDLL 796

Query: 80  -----DLARLQKAFPQGRT-LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNIL 132
                +   +      G T + +    I ++     IP+      + G G+NL    + +
Sbjct: 797 EVLLGESMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLT-AADTV 855

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-Q 191
           +   + ++ E      +R    R  + G  + V V  ++A  T+DE +      K  + Q
Sbjct: 856 ILHDVDFNPE-----NDRQAEDRCHRIGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQ 910

Query: 192 DLLLNALKK 200
            +L ++ KK
Sbjct: 911 RVLNDSGKK 919


>gi|164426583|ref|XP_956548.2| chromatin remodelling complex ATPase chain ISW1 [Neurospora crassa
           OR74A]
 gi|157071396|gb|EAA27312.2| chromatin remodelling complex ATPase chain ISW1 [Neurospora crassa
           OR74A]
          Length = 1126

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 420 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 479

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++++     + +++    +  L  L+               G 
Sbjct: 480 EHLV--YNAGKMLVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGGT 537

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+      +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 538 AHEDRIAAIDEYNKPDSDKFVFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 596

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 597 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 637


>gi|154273573|ref|XP_001537638.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus NAm1]
 gi|150415246|gb|EDN10599.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus NAm1]
          Length = 974

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 413 MNLYVGMSDMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 472

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ I+++     + +++    +  L  L         Q
Sbjct: 473 PGPPYTTDEHLI--DNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQ 530

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N    +  +      + G G+NL    +I++ +   W+ +
Sbjct: 531 YCRIDGSTAHEDRIAAIDEYNRPGSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQ 589

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 590 ADLQAMDR-----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 643


>gi|156082193|ref|XP_001608585.1| DNA repair protein rhp54 [Plasmodium vivax SaI-1]
 gi|148801524|gb|EDL42923.1| DNA repair protein rhp54, putative [Plasmodium vivax]
          Length = 1064

 Score = 92.7 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
             K + L  +   I++     +++  ++   L  ++               G ++ K   
Sbjct: 526 SCKFQLLHFLLKTIKQNTTDKVVIVSNYTQTLDYMEILCKENFYKFVRLDGGISIKKRHK 585

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++     I +      S G G+NL    N L+     W+    +Q + R+      +
Sbjct: 586 VISDFTHSSDIFIFLLSSKSGGCGINL-ISSNRLILLDPDWNPANDKQALARVW-----R 639

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+  ++Y L    TIDE V QR  +K  +  +++
Sbjct: 640 EGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSSMIV 676


>gi|169620543|ref|XP_001803683.1| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
 gi|160704055|gb|EAT79355.2| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
          Length = 900

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 68  AAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----IQEWNEGK----IPLLF 113
              +++   F + L  L      +++P  R       T     I  +N+        +  
Sbjct: 669 GHKVLIFSQFTTTLDLLGQYLDLRSWPHARIDGSVAQTDRQSQILAFNKTDKKNATNIFI 728

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++  Q ++R       + G  R V VY    +
Sbjct: 729 LSTRAGGQGINL-AAADTVILFDSDWNPQQDLQAMDR-----AHRIGQTRNVIVYRFATR 782

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           NT+++ +L+    K  ++ L++
Sbjct: 783 NTVEQKLLESAEAKRRLEKLVI 804


>gi|119187661|ref|XP_001244437.1| hypothetical protein CIMG_03878 [Coccidioides immitis RS]
          Length = 1905

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +QY + QR  Y   +  NI   + A K      L       D         + ++     
Sbjct: 1627 RQYQEVQR--YLANKNSNIRDISHAPKLTALRDL-----LIDCGIGVDLSVEGELNTAAS 1679

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
             +        ++       L  +Q                       K    + ++N + 
Sbjct: 1680 YVSP---HRALIFCQMKEMLDIVQNDVLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDP 1736

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V V
Sbjct: 1737 SYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNV 1790

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI + T++E +L   R K  +   ++N
Sbjct: 1791 YRLITRGTLEEKILNLQRFKIDVASTVVN 1819


>gi|327351880|gb|EGE80737.1| chromodomain helicase hrp3 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1549

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----RTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L           + LD         
Sbjct: 778 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIAAGPRR 837

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N  +           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 838 LSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 891

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E VL+R R K
Sbjct: 892 HRIGQTRPVSVYRLVSKDTVEEEVLERARNK 922


>gi|221053502|ref|XP_002258125.1| atp-dependant helicase [Plasmodium knowlesi strain H]
 gi|193807958|emb|CAQ38662.1| atp-dependant helicase, putative [Plasmodium knowlesi strain H]
          Length = 1759

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                +   K+ ALE ++ K        ++   F   L  L+                  +
Sbjct: 1325 KDITLGSGKLFALEKLLNKCKREGNKCLLFTQFIKMLDILEIFLNHLNYTFIRLDGSTKV 1384

Query: 95   DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    + ++N  K I L  +   S   G+NL    N+++F+   W+    +Q ++R   
Sbjct: 1385 EQRQKIVTKFNNDKSIFLFISSTRSGSIGINLT-AANVVIFYDTDWNPSIDKQAMDRC-- 1441

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  + V V+  + + T++E + ++   K  +  + ++
Sbjct: 1442 ---HRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDTICIS 1481


>gi|118095916|ref|XP_413879.2| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Gallus gallus]
          Length = 1837

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 792 SSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 851

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 852 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 905

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 906 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 946


>gi|310800555|gb|EFQ35448.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1107

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
            Y  + +    +   KI+ +  I+ ++ +    IV   F S +  ++  F +         
Sbjct: 869  YNPDGQVSHILASAKIRQMMQILHKEVDQHKFIVFSQFTSMMDLVEPFFRKEGFKFTRYD 928

Query: 95   -----DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 D+   ++    N+    +L         GLNL      ++    +W+    +Q I
Sbjct: 929  GSMKNDEREASLHRLRNDKNTRILLCSLKCGSLGLNLT-AATRVIILEPFWNPFVEEQAI 987

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
            +R+      +      V VY L  + T++E +L     K  + +  +   +KK+   +
Sbjct: 988  DRV-----HRLTQTVDVIVYKLTVEKTVEERILALQEKKRLLAETAIEGGMKKDAFKL 1040


>gi|85090821|ref|XP_958601.1| hypothetical protein NCU07556 [Neurospora crassa OR74A]
 gi|28919976|gb|EAA29365.1| hypothetical protein NCU07556 [Neurospora crassa OR74A]
          Length = 1893

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             + L  +      G         I  ++N +    +L    +  G GLNL  G + ++F 
Sbjct: 1691 KTMLPSVSHLRLDGSVDPTRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFV 1749

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+ ++  Q ++R       + G K+ V VY LI + T++E +L   R K  +   ++
Sbjct: 1750 EHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVV 1804

Query: 196  N 196
            N
Sbjct: 1805 N 1805


>gi|326471073|gb|EGD95082.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1050

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  ++++ +     IV   F S L +++     G           R   ++  
Sbjct: 808 TSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 867

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 868 LNRLRNSSGTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 921

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 922 NQTIDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 959


>gi|323138387|ref|ZP_08073457.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
 gi|322396334|gb|EFX98865.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
          Length = 828

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARL 84
            +  ++ ++++  + Y  +++    V  +++ AL E +  +  A  + V   +      +
Sbjct: 503 LTCALQNMRMSCNSTYLLDQQTDHGVKADELAALFEDLFAEPEAKAV-VFSQWTRTHDII 561

Query: 85  QKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +              G   DK P  ++ + +     +F    +   GLNLQ+  + LV 
Sbjct: 562 IRRLEMRKLGYVSFHGGVPSDKRPELVERFRDDPACRVFLSTDAGSTGLNLQH-ASTLVN 620

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G  R V V   +A+ TI+E +L  L  K ++   +
Sbjct: 621 MDLPWNPAILEQRIARI-----HRMGQIRPVRVINFVAKGTIEEGMLSVLAFKRSLSAGI 675

Query: 195 LNA 197
           L+ 
Sbjct: 676 LDG 678


>gi|289618531|emb|CBI55255.1| unnamed protein product [Sordaria macrospora]
          Length = 1872

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
               L  +      G         I  ++N +    +L    +  G GLNL  G + ++F 
Sbjct: 1670 KKMLPSVSHLRLDGSVDPTRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFV 1728

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+ ++  Q ++R       + G K+ V VY LI + T++E +L   R K  +   ++
Sbjct: 1729 EHDWNPQKDLQAMDR-----AHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVV 1783

Query: 196  N 196
            N
Sbjct: 1784 N 1784


>gi|58270542|ref|XP_572427.1| chromosome organization and biogenesis -related protein
           [Cryptococcus neoformans var. neoformans JEC21]
 gi|134118014|ref|XP_772388.1| hypothetical protein CNBL2540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255001|gb|EAL17741.1| hypothetical protein CNBL2540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228685|gb|AAW45120.1| chromosome organization and biogenesis -related protein, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 939

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 17/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG-KIPLLF 113
           KA    +++   F   L  L+ A            G+T  D+    + E+N+   I +  
Sbjct: 765 KAEGKRMLLFSQFVMILDILEGALNHLGIRYTRLDGQTKTDERQGLVDEFNDDTDITVFL 824

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +++V +   ++        +R    R  + G +R V V  LI +
Sbjct: 825 LSTKAGGVGINLT-AASVVVIYDQDFNPH-----NDRQAADRAYRIGQERKVEVIKLITK 878

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           N+IDE +L+   TK  + D++
Sbjct: 879 NSIDEDMLEIGLTKLQLDDMV 899


>gi|255720394|ref|XP_002556477.1| KLTH0H14300p [Lachancea thermotolerans]
 gi|238942443|emb|CAR30615.1| KLTH0H14300p [Lachancea thermotolerans]
          Length = 1037

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 29/185 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----- 86
           Q  N   Y D ++        K++ ++ +++   +     ++       L  L++     
Sbjct: 607 QRQNEDSYGDPKR------SGKMQVVKQLLKLWHSQGHKTLLFTQSRQMLDILERFISYK 660

Query: 87  ----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           ++      +  +N G   +        G G+NL  G N ++ F 
Sbjct: 661 DPELEELTYLRMDGTTSIGARQALVDSFNNGSYDVFLLTTRVGGLGVNLT-GANRIIIFD 719

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+     Q  ER       + G +R V +Y L+   +I+E +  R   K  + + +L 
Sbjct: 720 PDWNPSTDMQARERAW-----RIGQRREVTIYRLMIAGSIEEKIYHRQIFKQFLTNKILT 774

Query: 197 ALKKE 201
             K++
Sbjct: 775 DPKQK 779


>gi|42523166|ref|NP_968546.1| helicase/SNF2 family protein [Bdellovibrio bacteriovorus HD100]
 gi|39575371|emb|CAE79539.1| putative helicase/SNF2 family domain protein [Bdellovibrio
            bacteriovorus HD100]
          Length = 1330

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALE 60
             Y++  ++   +  GE+       +  ++  Q  +  GA+   + +      +  + +L+
Sbjct: 1106 AYNQRIQDTIRE-AGESQSQLQMLTALLRLRQACSDPGALPEVKYEKTPPKLEALMDSLQ 1164

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKI- 109
             IIE       +V   F   L R +K                   +    ++++NE K  
Sbjct: 1165 EIIES--GESALVFTQFLQTLERTEKLLKAVGIPVFVLHGAIPTKQRQKILKDFNETKGG 1222

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    + +     WW+     Q  +R       + G ++AV V+ 
Sbjct: 1223 AVLVMTLKTGGVGLNLTK-ASYVFHLEPWWNPSVENQATDR-----AHRLGQRKAVQVFR 1276

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             I   +++E +      K+     L +  +  T
Sbjct: 1277 YIMHESLEEKMELLKERKNRKFQSLFSETEAST 1309


>gi|302663877|ref|XP_003023576.1| hypothetical protein TRV_02323 [Trichophyton verrucosum HKI 0517]
 gi|291187579|gb|EFE42958.1| hypothetical protein TRV_02323 [Trichophyton verrucosum HKI 0517]
          Length = 1054

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  ++++ +     IV   F S L +++     G           R   ++  
Sbjct: 812 TSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 871

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 872 LNRLRNSSGTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 925

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 926 NQTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 963


>gi|225560949|gb|EEH09230.1| RING-13 finger domain-containing protein [Ajellomyces capsulatus
            G186AR]
          Length = 1205

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 39/220 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-- 62
               +R+    L+     +  +  + ++ L             +W  V   KI+    I  
Sbjct: 970  KAVERKSLPQLKKNAARSVEAKREYMRYL-----------TDNW--VTSAKIEKTMEILR 1016

Query: 63   -----IEKANAAPI--IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
                 I + +  P   IV   F S L  LQ    +            +   ++   ++  
Sbjct: 1017 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1076

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1077 DSQNHTIMLISLKAGNSGLNL-VAASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1130

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V V+ ++   T+++ +L+    K  + +  L+    ++I 
Sbjct: 1131 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSIG 1170


>gi|156085062|ref|XP_001610014.1| SNF2 domain-containing protein / helicase domain-containing protein
           [Babesia bovis]
 gi|154797266|gb|EDO06446.1| SNF2 domain-containing protein / helicase domain-containing protein
           [Babesia bovis]
          Length = 829

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARL------------QKAFPQGRTLDKDP 98
             K+K    IIE  +AN   +++       L  +                    ++ K  
Sbjct: 474 STKLKVAMDIIEKWEANGDKVLIFTQTIQMLDIIHDTLAKHYGQCRMARIDGEVSIKKRA 533

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ ++  + + LL       G GLNL     +L+ F   W+     Q  ER       
Sbjct: 534 KLLESFHSDENMFLLLLTTRVGGVGLNLTCANRVLI-FDPDWNPMTDSQARER-----SY 587

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  R V +Y LI+ +T++E +  R   K  + + +L+
Sbjct: 588 RIGQNRDVVIYRLISAHTVEEKIYHRQIYKFYMSEKILS 626


>gi|46137507|ref|XP_390445.1| hypothetical protein FG10269.1 [Gibberella zeae PH-1]
          Length = 1114

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 43/225 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 418 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 477

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++++     + +++    +  L  L+               G 
Sbjct: 478 EHLV--YNAGKMAVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGT 535

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+   +  +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 536 AHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 594

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G  + V VY  + +N I+E VL+R   K  +  L++
Sbjct: 595 -----AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVI 634


>gi|328779113|ref|XP_392959.4| PREDICTED: Rad54 protein isoform 1 [Apis mellifera]
          Length = 741

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 24/161 (14%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  L   I+      I++  ++   L   +K                T+ K    ++ +N
Sbjct: 507 LDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCYKRCYNYVRLDGTMTIKKRSKVVERFN 566

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 567 DSNSNDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 620

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             F        TI+E + QR   K  +   +++  +    H
Sbjct: 621 PCFT------GTIEEKIFQRQAHKKALSSTVVDQEEDVARH 655


>gi|210075373|ref|XP_501321.2| YALI0C01243p [Yarrowia lipolytica]
 gi|199425214|emb|CAG81616.2| YALI0C01243p [Yarrowia lipolytica]
          Length = 1235

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 37/230 (16%)

Query: 1   MKQYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQL---ANGA-VYYDEEK--HWKE 50
           +K Y +  +     +  ++    +          K +QL    N   VY + E   +   
Sbjct: 696 LKMYQQMLKYNALYVGDDSGAAGVNKSGVKGLNNKIMQLRKICNHPYVYEEVETLLNPSH 755

Query: 51  VHDE-------KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGR 92
            +++       K + L+ I+ K  A    +++ +              L  LQ     G 
Sbjct: 756 GNNDLLWRSAGKFELLDRILPKFKARDHRVLMFFQMTQIMDIMEDYLRLRGLQYLRLDGN 815

Query: 93  TL-DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           T  D     ++ +N    P         + G GLNLQ   + ++ +   W+  +  Q   
Sbjct: 816 TKADDRSEMLKLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDTDWNPHQDLQA-- 872

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                R  + G  + V +  LI +++++E++LQR   K  I   ++ A K
Sbjct: 873 ---QDRAHRIGQTKEVRILRLITEDSVEEVILQRAHAKLEIDGKVIQAGK 919


>gi|315043318|ref|XP_003171035.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
 gi|311344824|gb|EFR04027.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
          Length = 922

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 647 KRQALVDDFNRSPPSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 704

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 705 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 744


>gi|308807621|ref|XP_003081121.1| DNA-dependent ATPase, stimulates strand exchange by modifying the
           topology of double-stranded DNA; i (ISS) [Ostreococcus
           tauri]
 gi|116059583|emb|CAL55290.1| DNA-dependent ATPase, stimulates strand exchange by modifying the
           topology of double-stranded DNA; i (ISS) [Ostreococcus
           tauri]
          Length = 730

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 31/207 (14%)

Query: 8   QRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEKIKALEVII 63
           ++EL  +++ + I  A  + +   +       AV  D              K   L+ ++
Sbjct: 429 EKELDVEVESDAIARATTTETSVDELK-----AVMADALPSGYGGGIDGSGKFTVLQRML 483

Query: 64  EKANAAP-----IIVAYHFNSDL---ARLQK-------AFPQGRTLDKDPCTIQEWNEGK 108
           E           +++   +++ L    ++ K              +D     ++++N G 
Sbjct: 484 EALKDRGDCLERVVIVSGYSASLASADKICKKLDLPTSRLDGTVPVDLRTSIVKDFNNGD 543

Query: 109 I-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              ++     + G GLNL  G N L+   + W+    +Q + R+      + G ++ V +
Sbjct: 544 GGQVMLLSVVAGGAGLNL-VGANRLILMDVSWNPAHDRQAMGRVW-----RDGQRKPVTI 597

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Y LI   T+++ V +R   K  +++ +
Sbjct: 598 YRLITSGTVEQKVFERQLGKEVLKNTV 624


>gi|47221989|emb|CAG08244.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 965

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCT-IQ 102
              +  L++I EK +    ++   + S L           L+     G    K     ++
Sbjct: 796 SAIVSELKMIREKYSDQKSVIVSQWTSMLRIVAVHLRRIGLRYGIIDGTVNPKQRMDLVE 855

Query: 103 EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N       ++     + G GLNL  GGN L    + W+     Q  +RI      + G
Sbjct: 856 EFNTNAKGPQVMLVSLCAGGVGLNL-IGGNHLFLIDMHWNPALEDQACDRI-----YRVG 909

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + V ++    + T++E +      K  +   +L+   K
Sbjct: 910 QTKDVTIHRFECEGTVEEKISTLQVKKKELAQNVLSGTGK 949


>gi|320591351|gb|EFX03790.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1138

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 46/234 (19%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN------------ 37
           M  Y      Q + Y  +  ++I+A N A              +QL              
Sbjct: 410 MNVYVGMSDMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAE 469

Query: 38  -GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------Q 85
            G  Y  +E      +  K+  L+ ++++     + +++    +  L  L         Q
Sbjct: 470 PGPPYTTDEHLV--YNAGKMAVLDRLLKRMSEQGSRVLIFSQMSRLLDILEDYCVFRGYQ 527

Query: 86  KAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D    I E+N+   +  +      + G G+NL    +I+V +   W+ +
Sbjct: 528 YCRIDGSTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQ 586

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q ++R       + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 587 ADLQAMDR-----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 635


>gi|261198361|ref|XP_002625582.1| RSC complex subunit [Ajellomyces dermatitidis SLH14081]
 gi|239594734|gb|EEQ77315.1| RSC complex subunit [Ajellomyces dermatitidis SLH14081]
          Length = 1468

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
            K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 825  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 884

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                  K + L+ I+ K  A+   +++ +              L  ++     G T   D
Sbjct: 885  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 944

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +E+N              + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 945  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 998

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 999  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1043


>gi|323347520|gb|EGA81788.1| Rad5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1169

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 997  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1056

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1057 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1112 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|299115201|emb|CBN74032.1| Putative ATP-dependent helicase YFR038W [Ectocarpus siliculosus]
          Length = 896

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF---------PQGRT--LDKDPCTIQEWNEGKIPLLFA 114
           A    +++     S L  L+              G T  LD+     +  +  K  +   
Sbjct: 593 AGGHKVLIFSQMTSLLDVLEDYLRHRGWEFHRIDGSTDVLDRQRQIEEFNSNPKFFVFLL 652

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    +  + F   W+  +  Q + R       + G ++ V VY L+   
Sbjct: 653 STRAGGLGINL-CAADTCILFDSDWNPHQDSQAMARC-----HRIGQQKPVMVYRLLTTG 706

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +++  ++ +  +K  ++ + +  
Sbjct: 707 SVEIEMMAKQISKKKLERVAVQG 729


>gi|259148021|emb|CAY81270.1| Rad5p [Saccharomyces cerevisiae EC1118]
          Length = 1169

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 997  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1056

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1057 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1112 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|256269159|gb|EEU04491.1| Rad5p [Saccharomyces cerevisiae JAY291]
          Length = 1170

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 998  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1057

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1058 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1112

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1113 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1150


>gi|238484253|ref|XP_002373365.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
           NRRL3357]
 gi|220701415|gb|EED57753.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
           NRRL3357]
          Length = 885

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 22/167 (13%)

Query: 46  KHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +H+      K   +  L  I+  + +  +++  ++ S L  L                  
Sbjct: 534 RHFSPSSSAKIRVLDQLLHILHTSTSEKVVLVSNYTSTLNLLATLLTSLSLPFLRLDGST 593

Query: 93  TLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    ++++N     +         + G GLNL  G + L+ F + W+     Q + 
Sbjct: 594 PAQKRQSLVEDFNRFPTNRCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPATDIQAMA 652

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 653 RI-----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKLGLADSVME 694


>gi|332025027|gb|EGI65214.1| Transcription termination factor 2 [Acromyrmex echinatior]
          Length = 916

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDK----- 96
           ++          +  ++ I++K N   IIV   + S L  +    P  +G T  K     
Sbjct: 737 DDDRISSKMKVLLNIVKQILQKGNDKLIIV-SQWTSLLEVIASHLPSIKGATFSKFTGNV 795

Query: 97  ----DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   ++ +N       +L     + G GLNL  GGN L+ F + W+ +   Q  +R
Sbjct: 796 PIKDRQGIMESFNSRNFGPRILLLSLTAGGVGLNL-IGGNHLLLFDIHWNPQLETQAQDR 854

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           I      + G  + V+VY  I  NTI+E +      K  I   +L+      + 
Sbjct: 855 I-----YRFGQTKNVYVYKFICVNTIEERIKALQERKLQIAKNVLSGTTSRVVG 903


>gi|310795289|gb|EFQ30750.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 903

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
             K +AL  I++     P   +I+   + S L  +Q    +            T  K   
Sbjct: 731 SSKTEALLKILQATTKDPKSKVIIFSQWTSFLTIIQNQLVEAGYKFARIDGSMTASKRDA 790

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I   + +    ++ A  A C  GLNL    + ++    WW      Q ++R+      +
Sbjct: 791 AIHALDHDPDTRVMLASLAVCSVGLNL-VAADTVILADSWWAPAIEDQAVDRV-----HR 844

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G KR   V+ L+ + T++E VL     K T+
Sbjct: 845 LGQKRPTTVWRLVMEGTVEERVLDIQHEKRTL 876


>gi|26333481|dbj|BAC30458.1| unnamed protein product [Mus musculus]
          Length = 278

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
             +  K+  L+ ++ K     + +++       L  L+              G+T   + 
Sbjct: 39  VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 98

Query: 99  CT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +NE      +      + G G+NL    ++++ +   W+ +   Q ++R     
Sbjct: 99  QDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAMDR----- 152

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 153 AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 193


>gi|219121950|ref|XP_002181319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407305|gb|EEC47242.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1431

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 34/220 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEVHD------ 53
           K Y      L  D+      + +  +     +QL    G  Y       + +        
Sbjct: 571 KLYRDI---LIRDIDAVQGTSGSRTAILNIVMQLRKCAGHPYLFPGTEDRSLPPLGEHLV 627

Query: 54  ---EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDP 98
               K+  L+ ++++ +     +++       L  ++     + FP  R       ++  
Sbjct: 628 ENCGKMVVLDKLLKRLHERGHRVLLFTQMTRVLDIMEDYLVMRRFPYCRIDGNTSYEQRE 687

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N    +  +      + G G+NLQ   ++++ +   W+ +   Q        R 
Sbjct: 688 EYIDAYNAPNSEKFIFLLSTRAGGLGINLQT-ADVVILYDSDWNPQADLQA-----QDRA 741

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G KRAV V+ L+ ++T++E +++R + K  +  +++ 
Sbjct: 742 HRIGQKRAVQVFRLVTEHTVEEKIVERAQQKLKLDAMVVQ 781


>gi|330803796|ref|XP_003289888.1| hypothetical protein DICPUDRAFT_154353 [Dictyostelium purpureum]
 gi|325079999|gb|EGC33573.1| hypothetical protein DICPUDRAFT_154353 [Dictyostelium purpureum]
          Length = 1851

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIP--LLFAH 115
               +++       L  L +                  +     +  +N    P       
Sbjct: 1045 GHRVLIFSQMVRMLDILAEYLKGRSFCFQRLDGSMSRENRSKAMDRFNAVDSPDFCFLLS 1104

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + +V F   W+ +   Q   R       + G K  V +Y L+++ +
Sbjct: 1105 TKAGGLGINLST-ADTVVIFDSDWNPQNDLQAEAR-----AHRIGQKNHVNIYRLVSKKS 1158

Query: 176  IDELVLQRLRTKSTIQDLLLNALKK 200
            ++E +L+R + K  +  L++  ++K
Sbjct: 1159 VEEDILERAKQKMVLDHLVIQTMEK 1183


>gi|220679201|emb|CAX12774.1| novel protein similar to H.sapiens ERCC6, excision repair
           cross-complementing rodent repair deficiency,
           complementation group 6 (ERCC6) [Danio rerio]
          Length = 559

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAH 115
               +++       L  L+    +            T+      I ++N    I +    
Sbjct: 390 QGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILT 449

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+     Q  ER       + G K+ V VY L+   T
Sbjct: 450 TRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARERAW-----RIGQKQQVTVYRLLTAGT 503

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 504 IEEKIYHRQIFKQFLTNRVLKDPKQR 529


>gi|190406072|gb|EDV09339.1| DNA repair protein RAD5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1169

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 997  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1056

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1057 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1112 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|50284977|ref|XP_444917.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74691178|sp|Q6FY76|RAD5_CANGA RecName: Full=DNA repair protein RAD5
 gi|49524219|emb|CAG57810.1| unnamed protein product [Candida glabrata]
          Length = 1151

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 54   EKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQ--------------KAFPQGRTLD 95
             K+ AL    + + + +    ++V   F+S L  L+                F    +L 
Sbjct: 975  AKLNALIRHLQQLQDSSAGEQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLK 1034

Query: 96   KDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    ++++         +L     + G GLNL    +       WW      Q I+RI 
Sbjct: 1035 ERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTC-ASYAFMMDPWWSPSMEDQAIDRI- 1092

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 + G   +V V   +   +I+E +L+    K T+ + +
Sbjct: 1093 ----HRIGQTNSVKVIRFVIDGSIEEKMLRIQDRKRTLGEAM 1130


>gi|159464126|ref|XP_001690293.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284281|gb|EDP10031.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 116

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               RL  A       ++    +Q +N + KI +      S G G+NL  G + ++F+  
Sbjct: 14  HTYMRLDGATK----PEQRQILMQRFNTDPKIFVFILSTRSGGVGINLT-GADTVIFYDS 68

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            W+     Q  +R       + G  R V +Y L++ NTI+E +L++   K  +
Sbjct: 69  DWNPAMDAQAQDRC-----HRIGQTREVHIYRLVSTNTIEENILRKFNQKRQL 116


>gi|323332493|gb|EGA73901.1| Rad5p [Saccharomyces cerevisiae AWRI796]
          Length = 1169

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 997  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1056

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1057 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1112 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|224132088|ref|XP_002328182.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222837697|gb|EEE76062.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 896

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFP 89
            D EK+W E    KI AL   +E  + + +  I+   + + L  LQ              
Sbjct: 720 IDIEKNWVE--SSKIVALLQELEILRLSGSKSILFSQWTAFLDLLQIPLSRSNISFVRLD 777

Query: 90  QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +    I++++E   I +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 778 GTLNQQQRERVIKQFSEDDSILVLLMSLKAGGVGINLTAASNAFVM-DPWWNPAVEEQAV 836

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  + V +   I + T++E +      K 
Sbjct: 837 MRI-----HRIGQTKRVMIRRFIVKGTVEERMEAVQARKQ 871


>gi|242822858|ref|XP_002487973.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218712894|gb|EED12319.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1086

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  KI  L  +++K   N    ++   F   +  L+              GRT 
Sbjct: 903  KNQEWMNSGKIDKLCELLKKFKENGDRTLIFSQFTLVMDILEYVLETVNMRFFRLDGRTN 962

Query: 95   DKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   I    + +  IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 963  VEDRQAILDAFYEQTDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1016

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R  + G  R V V  L+ + TI+E +    +TK  +   ++
Sbjct: 1017 ENRAHRVGQTREVEVIRLVTKGTIEEQIYALGQTKLALDQRVV 1059


>gi|170033270|ref|XP_001844501.1| chromo domain protein 1 [Culex quinquefasciatus]
 gi|167873908|gb|EDS37291.1| chromo domain protein 1 [Culex quinquefasciatus]
          Length = 881

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
           V   K + L+ ++ K  +    +++   F   L  ++              G+T   D  
Sbjct: 683 VASGKFRQLDELLPKLKSEGHRVLIFSQFVMMLDIMEHYLKIRKHGFLRLDGQTAVTDRQ 742

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +    +  I +      + G G+NL     +++         +     ++    R  
Sbjct: 743 EMIDLYTQDPNIFVFLLSTKAGGLGINLTAADTVIIHD------IDFNPYNDKQAEDRAH 796

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  + V +Y L+++ TI+E +L   + K  ++  +  
Sbjct: 797 RMGQTKPVTIYKLVSEGTIEEGMLMIAQEKLQLEKEVTE 835


>gi|6323060|ref|NP_013132.1| Rad5p [Saccharomyces cerevisiae S288c]
 gi|417587|sp|P32849|RAD5_YEAST RecName: Full=DNA repair protein RAD5; AltName: Full=Radiation
            sensitivity protein 5; AltName: Full=Revertibility
            protein 2
 gi|172347|gb|AAA34951.1| RAD5 protein [Saccharomyces cerevisiae]
 gi|1360348|emb|CAA97556.1| RAD5 [Saccharomyces cerevisiae]
 gi|285813454|tpg|DAA09350.1| TPA: Rad5p [Saccharomyces cerevisiae S288c]
          Length = 1169

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 997  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1056

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1057 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1112 -HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|224111230|ref|XP_002315787.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864827|gb|EEF01958.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1132

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 79/189 (41%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGA-VYYDEEKHWKEV----HDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            T++  +  N   ++  +   W++        K + L+ ++ K +     +++       
Sbjct: 697 LTMQLRKCCNHPYLFVGDYNMWRKDEIMRASGKFELLDRLLPKLHATDHRVLLFSQMTRL 756

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           +  L         +     G T  ++    ++++N    P  +      + G GLNLQ  
Sbjct: 757 MDILEIYLQLHDYKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQT- 815

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K+ V V+ L++  +++E++L+R + K 
Sbjct: 816 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKKEVRVFVLVSVGSVEEVILERAKQKK 870

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 871 GIDAKVIQA 879


>gi|119592220|gb|EAW71814.1| FLJ20105 protein, isoform CRA_b [Homo sapiens]
          Length = 1080

 Score = 92.7 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 28/210 (13%)

Query: 3   QYHKFQR-ELYCDLQGENIEAFNSASKTVKCL---QLANGAVYYDEEKHWKEVH----DE 54
            Y KF   +   +L  E            K     +L +   Y D      +        
Sbjct: 231 IYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARAYVDHIDQVTDDTLMEESG 290

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDPCT 100
           K+  L  ++++        +V       L  +++      F   R        L+++   
Sbjct: 291 KMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRI 350

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                     +        G GL L      +V F   W+     Q ++R+      + G
Sbjct: 351 NLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YRIG 404

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            K  V VY LI   T++E + +R   K ++
Sbjct: 405 QKENVVVYRLITCGTVEEKIYRRQVFKDSL 434


>gi|320164200|gb|EFW41099.1| chromodomain helicase DNA binding protein 2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1939

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIV 73
             G   E+  +A+      QL  G    D+          K+  L+ ++ +       +++
Sbjct: 926  SGATNESSGAAAAGG---QLTLGG-QTDDRLARLVKQSGKMVLLDKLLVRLRETGHRVLI 981

Query: 74   AYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWN-EGKIPL-LFAHPASCGH 121
                   L  L +             G    D    ++  +N EG           + G 
Sbjct: 982  FSQMVRMLDILAEYMQRRGFGFQRLDGNVRGDLRKQSLDHFNAEGSTDFAFLLSTRAGGL 1041

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    + ++ F   W+ +   Q   R       + G K  V +Y +I +N+++E +L
Sbjct: 1042 GINL-ATADTVIIFDSDWNPQNDLQAEAR-----AHRIGQKNVVNIYRIITKNSVEEDIL 1095

Query: 182  QRLRTKSTIQDLLLNAL 198
            +R + K  +  +++  +
Sbjct: 1096 ERAKKKMILDHVVIQRM 1112


>gi|297833338|ref|XP_002884551.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330391|gb|EFH60810.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1130

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLAN------GAVYYDEEKHWKEVHDE 54
           K Y+K   ++    LQ  + ++ +  + T++  +  N      G  Y   +K        
Sbjct: 683 KVYYKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASG 742

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQ 102
           K + L+ ++ K       I++       +  L         +     G T  D+    ++
Sbjct: 743 KFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLK 802

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE   P  +      + G GLNLQ   + ++ F   W+ +  QQ  +R       + G
Sbjct: 803 QFNEPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQAEDR-----AHRIG 856

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 857 QKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 893


>gi|159130807|gb|EDP55920.1| TBP associated factor (Mot1), putative [Aspergillus fumigatus A1163]
          Length = 1891

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            +GA Y    +        ++K +  I++      ++ +  F                  +
Sbjct: 1665 SGASYVSPHRALIF---CQMKEMLDIVQSEVFNKLLPSVQFL--------RLDGSVEATR 1713

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R     
Sbjct: 1714 RQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR----- 1767

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1768 AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1808


>gi|73951133|ref|XP_859090.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 5 [Canis familiaris]
          Length = 1822

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQG 91
           D  K   +    K+  L+ ++ +       +++       L  L +             G
Sbjct: 775 DSFKGRLKYGSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDG 834

Query: 92  RTLDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +     +  +N    +         + G G+NL    + +V F   W+ +   Q  
Sbjct: 835 SIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQ 893

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R       + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 894 AR-----AHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 938


>gi|70990968|ref|XP_750333.1| TBP associated factor (Mot1) [Aspergillus fumigatus Af293]
 gi|66847965|gb|EAL88295.1| TBP associated factor (Mot1), putative [Aspergillus fumigatus Af293]
          Length = 1891

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            +GA Y    +        ++K +  I++      ++ +  F                  +
Sbjct: 1665 SGASYVSPHRALIF---CQMKEMLDIVQSEVFNKLLPSVQFL--------RLDGSVEATR 1713

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R     
Sbjct: 1714 RQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR----- 1767

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1768 AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1808


>gi|328696868|ref|XP_001944720.2| PREDICTED: lymphocyte-specific helicase-like [Acyrthosiphon pisum]
          Length = 713

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L  +IE+      ++   +     RL          ++        N     L+     
Sbjct: 519 QLLDLIEE-----FLIFRSYK--YTRLDGTMDIA---NRVKAITTFTNHPDCFLMLISTR 568

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++ F   W+ +   Q  +R       + G  + V VY L  ++T+D
Sbjct: 569 AGGLGLNLT-AADTVIIFDSDWNPQCDLQAQDRC-----HRIGQVKPVVVYRLCTKSTVD 622

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L     K  ++ +++
Sbjct: 623 ENILAHAAAKRKLEKIVI 640


>gi|330801436|ref|XP_003288733.1| hypothetical protein DICPUDRAFT_153008 [Dictyostelium purpureum]
 gi|325081209|gb|EGC34733.1| hypothetical protein DICPUDRAFT_153008 [Dictyostelium purpureum]
          Length = 1544

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWN-EGKIPLLFA 114
                +++       L  ++       T +                ++E+N + K+ +   
Sbjct: 1054 QGDKVLLFCQTRQMLDIVEAYIRNSTTFNYLRMDGTTSVKHRQSLVEEFNLDEKLFIFLL 1113

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G N ++ F   W+     Q  ER+      + G K++V +Y L+   
Sbjct: 1114 TTKVGGLGLNLT-GANRVILFDPDWNPSTDTQARERV-----YRIGQKKSVTIYRLVTLG 1167

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +  R   K  + + +L
Sbjct: 1168 TIEEKIYHRQIYKQFLTNKIL 1188


>gi|294655844|ref|XP_002770188.1| DEHA2C08294p [Debaryomyces hansenii CBS767]
 gi|199430649|emb|CAG86104.4| DEHA2C08294p [Debaryomyces hansenii]
          Length = 1034

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 38/223 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASK-------TVKCLQL--ANGAVYYDEEKHW-------- 48
             QR+ Y  +  ++I+A N A+K           +QL       Y  E            
Sbjct: 396 DMQRKWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 455

Query: 49  -KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
               + +K+  L+ +++K     + +++    +  L  ++              G+T   
Sbjct: 456 HLVYNSQKMIILDKLLKKFKQEGSRVLIFSQMSRMLDIMEDYCMFRDYEYCRIDGQTDHA 515

Query: 97  DP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+NE      +      + G G+NL    +I++ F   W+ +   Q ++R   
Sbjct: 516 DRVNAIDEYNEPGSSKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR--- 571

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V V+  +++N I+E VL+R   K  +  L++ 
Sbjct: 572 --AHRIGQTKQVRVFRFVSENAIEEKVLERATQKLRLDQLVIQ 612


>gi|164662775|ref|XP_001732509.1| hypothetical protein MGL_0284 [Malassezia globosa CBS 7966]
 gi|159106412|gb|EDP45295.1| hypothetical protein MGL_0284 [Malassezia globosa CBS 7966]
          Length = 1129

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQG----RTLD-------KDPCTIQEWNEGKIPLLFAH 115
            N    ++   +   LA++++A        R LD       ++    +   + KI +    
Sbjct: 972  NPIKSVIFSQWTRMLAKVKEALLHAGIGFRQLDGTMKREHREGAMSEFQQDPKIEVFLVS 1031

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL   G        +W+    QQ ++RI      + G KR + +   I Q +
Sbjct: 1032 LRAGGFGLNL-VAGCRAYLLDPYWNPAVEQQGLDRI-----HRLGQKRPIVMTKFIMQRS 1085

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETIH 204
            I+E +L+  + K  +   +     + T H
Sbjct: 1086 IEEKLLELQKRKLELASQVGRRTDRRTDH 1114


>gi|121702625|ref|XP_001269577.1| TBP associated factor (Mot1), putative [Aspergillus clavatus NRRL 1]
 gi|119397720|gb|EAW08151.1| TBP associated factor (Mot1), putative [Aspergillus clavatus NRRL 1]
          Length = 1901

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 35/211 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA---------------NGAVYYDEEK 46
            KQY++ Q+  Y   +   I     A K      L                + A Y    +
Sbjct: 1624 KQYNEVQQ--YLTAKHSQIRDVAHAPKLGALRDLLVDCGIGVDPPSEGDLSSASYVSPHR 1681

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN- 105
                    ++K +  I++      ++ +  F                  K    +  +N 
Sbjct: 1682 ALIF---CQMKEMLDIVQSEVFKKLLPSVQFL--------RLDGSVEATKRQDIVNRFNT 1730

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L    +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V
Sbjct: 1731 DPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVV 1784

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VY LI + T++E +L   R K  +   ++N
Sbjct: 1785 NVYRLITRGTLEEKILNLQRFKIDVASTVVN 1815


>gi|326435102|gb|EGD80672.1| acyl-CoA dehydrogenase domain-containing protein [Salpingoeca sp.
           ATCC 50818]
          Length = 832

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 24/160 (15%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
             K   L+ ++         +++   F + L  L++             G T  ++    
Sbjct: 661 SGKFAVLKDLLHKRSEQGDRVLLFSQFTTMLNILERFLTSLGISFLRIDGSTPVEERQDL 720

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++ N+  I        + G G+NL    N+++   + ++    +Q  +R       + 
Sbjct: 721 IDKFTNDKSIFCFLLSTKAGGLGINLT-AANVVILHDIDFNPYNDKQAEDRC-----HRV 774

Query: 160 GFKRAVFVYYLIAQNTIDELVLQR-----LRTKSTIQDLL 194
           G  + V V  LI++++++E++L+R        K   Q  L
Sbjct: 775 GQTKPVHVIRLISKDSVEEVMLKRADLKLQLEKDMTQSTL 814


>gi|158286564|ref|XP_308811.4| AGAP006945-PA [Anopheles gambiae str. PEST]
 gi|157020528|gb|EAA04280.4| AGAP006945-PA [Anopheles gambiae str. PEST]
          Length = 871

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 51  VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLD-KDP 98
               K+  +E ++E   A    I++  +++  L  +         +     G T      
Sbjct: 581 TDSAKLGIVEALLEAMLAMQEKIVIVSYYSKTLDMIGGLCDHYNYKYCRLDGSTAGPDRS 640

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N       +L     + G GLNL  G + LV +   W+     Q + R+     
Sbjct: 641 RIVAAFNNPANDSFILLLSAKAGGAGLNL-IGASRLVLYDNDWNPANDLQAMSRVW---- 695

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ VF+Y L+   +I+E + QR  +K+++   +++
Sbjct: 696 -RDGQRKPVFIYRLLTAYSIEERIFQRQISKTSLSGTVVD 734


>gi|226289867|gb|EEH45351.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb18]
          Length = 1348

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 998  ASSKLQLLEMLVPKLQERGHRVLIFSQFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQK 1057

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1058 QIDDYNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1111

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1112 RIGQQKKVLVFQLVTKASAEEKIMQIGKKKLALDQVLIEHMDAE 1155


>gi|115401476|ref|XP_001216326.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190267|gb|EAU31967.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 966

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 24/167 (14%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAFP---QGRTLDKDPCT 100
             K + L  ++ +  +    +I+   F          L+ LQ +F      R   + P  
Sbjct: 496 SGKFQVLSKLVRRFVSEQKKVIIFSGFEGALDLCEDMLSLLQTSFDPFRYVRLDGQTPSA 555

Query: 101 IQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++        N+ +  +      + G GLNL    + ++F    W+ ++ +Q   R+   
Sbjct: 556 VRNLSTYLFRNDERYLVFLISIRAGGEGLNLTCS-STIIFLDEDWNPQQMKQACSRV--- 611

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G  + V ++ + ++ T++E + +RL  K+ + D +   ++ +
Sbjct: 612 --HRIGQTKPVEIFRIQSRGTVEEQMARRLEKKAYMADRVTERVRSQ 656


>gi|332024392|gb|EGI64590.1| TATA-binding protein-associated factor 172 [Acromyrmex echinatior]
          Length = 1888

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++     + L  +++                           +  +N +  I +L  
Sbjct: 1673 HRALIFCQLKAMLDIVEEDLLRTHLPTVTYLRLDGSVPAAHRHSVVTRFNADPSIDVLLL 1732

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI ++
Sbjct: 1733 TTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRS 1786

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K    + +++
Sbjct: 1787 TVEEKIMGLQKFKLLTANTIIS 1808


>gi|302308944|ref|NP_986109.2| AFR562Cp [Ashbya gossypii ATCC 10895]
 gi|299790868|gb|AAS53933.2| AFR562Cp [Ashbya gossypii ATCC 10895]
          Length = 1445

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI-Q 102
            K + LE I+ K  A+   +++ +     +  +         +     G T   D   +  
Sbjct: 884  KFELLEKILPKFKASGHRVLIFFQMTQIMDIMEDFLRFCDMKYLRLDGHTKSDDRTALLN 943

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 944  KFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 997

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 998  QKNEVRILRLITDNSVEEVILERAHRKLDIDGKVIQAGK 1036


>gi|302920912|ref|XP_003053175.1| hypothetical protein NECHADRAFT_105989 [Nectria haematococca mpVI
            77-13-4]
 gi|256734115|gb|EEU47462.1| hypothetical protein NECHADRAFT_105989 [Nectria haematococca mpVI
            77-13-4]
          Length = 1144

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 22/165 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDP 98
            K W+     K+ A   ++++ N      IV   +   L  LQ     +   +    D   
Sbjct: 966  KTWE--PAAKVTACMDLLKQINETGEKTIVFSQWTLLLDLLQVAMSHEKLEKPERYDGSM 1023

Query: 99   CTIQEW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                         +   + ++     +   GLNL    + ++    +W+     Q ++R 
Sbjct: 1024 SATHRNIAARNFRDRKDVKVMLVSLRAGNAGLNLT-AASRVIIMDPFWNPYIEMQAVDR- 1081

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G ++ V VY ++ + T+++ ++     K  I +  L+
Sbjct: 1082 ----AYRIGQQKEVKVYRILTKKTVEDRIVALQNQKKEIVEAALD 1122


>gi|301607520|ref|XP_002933353.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Xenopus (Silurana) tropicalis]
          Length = 1809

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 791 SSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLAIKHYPFQRLDGSIKGELRKQ 850

Query: 100 TIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N EG           + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 851 ALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 904

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 905 RIGQKKQVNIYRLVTRGTVEEDIIERAKKKMVLDHLVIQRM 945


>gi|115492543|ref|XP_001210899.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197759|gb|EAU39459.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1329

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    K    ++++N     +         + G GLNL  G + LV F + W+   
Sbjct: 664 RLDGSTPAQKRQSLVEDFNRLPADRSFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT 722

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q + RI      + G KRA  +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 723 DIQAMARI-----HRDGQKRACRIYRILLKGSLEEKIWQRQVTKLGLADSVME 770


>gi|66811190|ref|XP_639303.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60467929|gb|EAL65942.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 931

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD-KDPCTIQEWNEGK 108
           L  I    +    ++  ++   L  L               G T + K    +  +N+  
Sbjct: 626 LANIRNSKSGDKTVIISNYTQTLEVLATMCKTRGYAYFQLDGSTANAKRQQLVNLYNDPA 685

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            P  +      + G GLNL  GGN LV F   W+     Q + R+      + G K+ V 
Sbjct: 686 RPEFVFLLSSKAGGVGLNL-IGGNHLVLFDADWNPANDAQSMARVW-----REGQKKIVS 739

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Y      TI+E + QR  TK  +   +   
Sbjct: 740 IYRTFTTGTIEEKIFQRQLTKQALSTSITEG 770


>gi|297735171|emb|CBI17533.3| unnamed protein product [Vitis vinifera]
          Length = 800

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++  F +             LD+    I+E+N       +  
Sbjct: 568 ARKHKVLIFSQWTKILDIMEYYFSEKGLEVCRIDGSVRLDERKRQIEEFNDMNSNCRVFL 627

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 628 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLATA 681

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +I+  +L+R  +K  ++ +++
Sbjct: 682 QSIEGRMLKRAFSKLKLEHVVI 703


>gi|5917756|gb|AAD56024.1|AF181827_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
          Length = 918

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 426 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 485

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 486 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 539

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 540 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 572


>gi|5917754|gb|AAD56022.1|AF181825_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
          Length = 918

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 426 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 485

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 486 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 539

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 540 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 572


>gi|313228968|emb|CBY18120.1| unnamed protein product [Oikopleura dioica]
          Length = 996

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYD--------EEK 46
           + Q+  Y  +  ++I+  N+               +   +  N    +D           
Sbjct: 360 EMQKNWYKKILLKDIDILNTGGDKGGGKMRLMNILMHLRKCTNHPYLFDGAEPGPPYTTD 419

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLD 95
                +  K+  L+ +++K  AN   +++   F S L            +     G T  
Sbjct: 420 QHIVDNCGKMVILDKLLKKCKANGDRVLLFTQFTSMLDIFEDYCLWRDYKYCRLDGGTDH 479

Query: 96  KDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D   +I  +N    +  L      + G G+NL    N+++ +   W+ +   Q ++R  
Sbjct: 480 ADRTESIDAYNAPNSEKFLFMLSTKAGGLGINLMT-ANVVIIYDSDWNPQNDLQAMDR-- 536

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G K+ V+VY +I   ++DE +++R   K  +  +++ + +
Sbjct: 537 ---AHRIGQKKQVYVYRMITDESVDERIIERSELKMRLDSVVIQSGR 580


>gi|302510062|ref|XP_003016991.1| hypothetical protein ARB_05285 [Arthroderma benhamiae CBS 112371]
 gi|291180561|gb|EFE36346.1| hypothetical protein ARB_05285 [Arthroderma benhamiae CBS 112371]
          Length = 1055

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  ++++ +     IV   F S L +++     G           R   ++  
Sbjct: 814 TSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 873

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 874 LNRLRNSSGTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 927

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 928 NQTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 965


>gi|254565555|ref|XP_002489888.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|238029684|emb|CAY67607.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|328350301|emb|CCA36701.1| putative SNF2 family helicase/ATPase [Pichia pastoris CBS 7435]
          Length = 1009

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 53  DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
             K++ L+ +++K        +++   F   L  ++      +            D    
Sbjct: 822 SGKVQKLKELLDKIIFEREEKVLIFSLFTQVLDIIEVVLSVLKIKFLRLDGQTSVDIRQD 881

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++ E + IP+      + G G+NL    N+++ F   ++  + +Q  +R       +
Sbjct: 882 IIDKFYEDETIPVFLLSTKAGGFGINLVCANNVII-FDQSFNPHDDKQAEDR-----AHR 935

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY ++ +NTIDE +LQ    K  +   + +
Sbjct: 936 VGQTKEVNVYRMVTKNTIDESILQLALNKLQLDSTVSD 973


>gi|295671388|ref|XP_002796241.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226284374|gb|EEH39940.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 999

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
             +  L   I    +  +++  ++ S L  L K                   K    + +
Sbjct: 669 RVLDQLLHNIRHTTSEKVVLISNYTSTLDLLGKLLTSLSLSFLRLDGSTPAAKRQALVDD 728

Query: 104 WNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N      +        + G GLNL  G + LV F + W+     Q + RI      + G
Sbjct: 729 FNRSSSTSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDG 782

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y  + +  ++E + QR  TK  + D +++
Sbjct: 783 QKRHCRIYRFLLKGALEEKIWQRQVTKIGLADSVMD 818


>gi|302830326|ref|XP_002946729.1| hypothetical protein VOLCADRAFT_120362 [Volvox carteri f.
           nagariensis]
 gi|300267773|gb|EFJ51955.1| hypothetical protein VOLCADRAFT_120362 [Volvox carteri f.
           nagariensis]
          Length = 1229

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIPLLFA 114
           A     ++       L+ L+      +             ++    +Q +    IP+   
Sbjct: 802 AEGHRTLIFSQSKVMLSILEAGVKAMKLSYCRIDGDVASAEERQAHVQRFQNSNIPVFLL 861

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL L    + ++     W+     Q ++R       + G  R V VY LI   
Sbjct: 862 TSQVGGLGLTLT-AADRVIIVDPAWNPSVDDQSVDR-----AYRMGQTRDVVVYRLITCG 915

Query: 175 TIDELVLQRLRTKSTIQD 192
           T++E + +R   K  +  
Sbjct: 916 TVEEKIYRRQVFKGGLSK 933


>gi|145345466|ref|XP_001417230.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577457|gb|ABO95523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 898

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPC 99
             K + L  ++++  A     +V     + L  ++    +               ++D  
Sbjct: 498 SAKSRFLMAMLDRFRAEGRRTLVFSQSQATLNVVEACIREANIKFVRIDGKVNVDERDRR 557

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             Q  +   IP++       G GL L     +++ +   W+     Q ++R       + 
Sbjct: 558 VTQFRSNADIPVMLLTARVGGLGLTLTEATRVII-YDPAWNPTTDNQSVDR-----AYRI 611

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G  + V VY L+   T++E + +R   K  +     + +
Sbjct: 612 GQTKDVVVYRLVTCGTVEEKIYRRQVFKGGVSKSATDGV 650


>gi|323452052|gb|EGB07927.1| hypothetical protein AURANDRAFT_26802 [Aureococcus anophagefferens]
          Length = 1012

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 66  ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE-WNEG--KIPLLF 113
           A  + +++       L  L         +     G T   D  +  + +N    +     
Sbjct: 444 AQDSRVLIFSQMTRMLDILEDYMRLNQYKYCRIDGSTSGDDRDSQMDVFNAPGSEKFAFL 503

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +I+V +   W+ +   Q ++R       + G  + V V+  + +
Sbjct: 504 LSTRAGGLGINL-ATADIVVLYDSDWNPQVDLQAMDR-----AHRIGQTKPVTVFRFVTE 557

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
            T++E +++R   K  +   ++ 
Sbjct: 558 GTVEEKIIERADRKLFLDAAVIQ 580


>gi|320580465|gb|EFW94687.1| hypothetical protein HPODL_3059 [Pichia angusta DL-1]
          Length = 1575

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 24/171 (14%)

Query: 42   YDEEKHWKEVHDEKIKAL-EVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGR----- 92
             D    WK     KI+AL E + +  +       IV   F S L  ++    +       
Sbjct: 1393 IDMGGEWK--SSTKIEALMEELYKSRSDRQTVKSIVFSQFTSMLDLVEWRLKRAGFSIAK 1450

Query: 93   ------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-Q 145
                   + +D           + +      + G  LNL     + +    WW+      
Sbjct: 1451 LQGSMTPIQRDSVIQHFMTNPSVEVFLVSLKAGGVALNLVEANQVFIL-DSWWNPALDTG 1509

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q  +RI      + G  R + +  L+ +++I+  +++  + K+ +    L+
Sbjct: 1510 QAADRI-----HRIGQHRPIRIVKLVIEDSIESRIIELQQKKADMVKATLD 1555


>gi|237844775|ref|XP_002371685.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
 gi|211969349|gb|EEB04545.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
          Length = 1249

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 82/219 (37%), Gaps = 31/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDE---------EKHWKEV 51
           + Y     +    LQG          +  ++  +  N    +D           +H  E 
Sbjct: 575 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIE- 633

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-----DKDPC 99
           +  K++  + ++ +        ++       +  L+     + F   R       D+   
Sbjct: 634 NAGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDR 693

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N     IP+      + G G+NL    + ++ +   W+ +   Q ++R+      
Sbjct: 694 QIEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQVDLQAMDRV-----H 747

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K AV VY L+ ++TI++ +++R   K  +   ++ 
Sbjct: 748 RIGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQ 786


>gi|32563629|ref|NP_491994.2| hypothetical protein H06O01.2 [Caenorhabditis elegans]
 gi|25004979|emb|CAB07481.2| C. elegans protein H06O01.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 1461

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 68/175 (38%), Gaps = 22/175 (12%)

Query: 40  VYYDEEKHWKEV--HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQ 90
           +Y D +   +++     K+  L+ ++ +       +++       L  LQ     + FP 
Sbjct: 695 IYDDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPS 754

Query: 91  GRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            R       D     +  +N              + G G+NL    + ++ F   W+ + 
Sbjct: 755 QRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN 813

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             Q + R       + G  + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 814 DLQAMSR-----AHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 863


>gi|327283794|ref|XP_003226625.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Anolis carolinensis]
          Length = 1863

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 822 SSGKLILLDKLLSRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 881

Query: 100 TIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N EG           + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 882 ALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 935

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 936 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 976


>gi|325096129|gb|EGC49439.1| ATP-dependent helicase RIS1 [Ajellomyces capsulatus H88]
          Length = 1052

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCT 100
             + +   KI+ L  I++  +     IV   F S L +++           R        
Sbjct: 809 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 868

Query: 101 IQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+R+   
Sbjct: 869 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV--- 924

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 925 --HRLNQTVDVKIYKLTIKNTVEERIVDLQERKRELANATIEG 965


>gi|294654788|ref|XP_456864.2| DEHA2A12276p [Debaryomyces hansenii CBS767]
 gi|199429151|emb|CAG84839.2| DEHA2A12276p [Debaryomyces hansenii]
          Length = 771

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
           +  K K L+ ++++  +    +++   F   L  +                         
Sbjct: 526 NSSKFKVLQQLLDELLSKNHKVLIFSQFTKVLDLINDWLVYENVEICRLDGSMNQSDREE 585

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N    K  +      + G G+NL    + ++ F   W+ +   Q I+R+      
Sbjct: 586 EITEFNAKNSKQQVFLLSTRAGGLGINLT-ASDTVIIFDNDWNPQIDLQAIDRV-----H 639

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  + V +Y  + +N+I+E+++ +  +K  ++ +++ 
Sbjct: 640 RIGQTKPVKIYRFLIKNSIEEILISKSYSKRFLEKIIIQ 678


>gi|68485451|ref|XP_713403.1| hypothetical protein CaO19.13120 [Candida albicans SC5314]
 gi|68485546|ref|XP_713356.1| hypothetical protein CaO19.5675 [Candida albicans SC5314]
 gi|46434839|gb|EAK94239.1| hypothetical protein CaO19.5675 [Candida albicans SC5314]
 gi|46434887|gb|EAK94286.1| hypothetical protein CaO19.13120 [Candida albicans SC5314]
          Length = 1102

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 16/151 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNS--DLARLQK--------AFPQGRTLDKDPCTIQEWN 105
            ++ +  +  K     +IV   F S  DL  L           +    ++D     I+E+ 
Sbjct: 932  LEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFY 991

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L     +   GL L    ++ +    +W+    +Q + R       + G  R V
Sbjct: 992  QSSKNVLLLSLRAGNAGLTLTCANHVFIM-DPFWNPFVEEQAMGR-----AHRIGQTREV 1045

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FV+ ++   T++  +++   +K  + +  L+
Sbjct: 1046 FVHRVLIAGTVENRIMELQESKKHLIESALD 1076


>gi|296005052|ref|XP_002808863.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|263429743|sp|C0H4W3|HEPF1_PLAF7 RecName: Full=Probable ATP-dependent helicase PF08_0048
 gi|225632260|emb|CAX64141.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
          Length = 2082

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 29/188 (15%)

Query: 32   CLQLANGA-VYYDEE---------KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
             LQ+ N   VY+D                +   K+ ALE ++ K        ++   F  
Sbjct: 1736 ILQIKNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIK 1795

Query: 80   DLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYG 128
             L  L+                  +++    + ++N  K I +  +   S   G+NL   
Sbjct: 1796 MLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLT-A 1854

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N+++F+   W+    +Q ++R       + G  + V V+  + + T++E + ++   K 
Sbjct: 1855 ANVVIFYDTDWNPSIDKQAMDRC-----HRIGQTKDVHVFRFVCEYTVEENIWKKQLQKR 1909

Query: 189  TIQDLLLN 196
             + ++ +N
Sbjct: 1910 KLDNICIN 1917


>gi|213404796|ref|XP_002173170.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212001217|gb|EEB06877.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 1246

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 19/155 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
              KI  L+ ++ K       I++   F   +  L++             G T  +    I
Sbjct: 883  SGKIDVLKKLLPKMKEQGDRILIFSQFTQVIDILEQVLDTLKITYTRLDGSTQVETRQDI 942

Query: 102  QEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +    E  I +      + G G+NL    N+++ +   ++  +  Q  +R       + 
Sbjct: 943  IDQFHRETDITVFLLSTKAGGFGINL-ACANVVILYDCSYNPFDDLQAEDR-----AHRV 996

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  + V V  LI +NT++E + +   TK  +   L
Sbjct: 997  GQTKQVTVIRLITKNTVEEYIQRLANTKLALDMSL 1031


>gi|126276965|ref|XP_001365054.1| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Monodelphis domestica]
          Length = 1836

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 796 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 855

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 856 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 909

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 910 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|238881773|gb|EEQ45411.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1100

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 16/151 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNS--DLARLQK--------AFPQGRTLDKDPCTIQEWN 105
            ++ +  +  K     +IV   F S  DL  L           +    ++D     I+E+ 
Sbjct: 930  LEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFY 989

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L     +   GL L    ++ +    +W+    +Q + R       + G  R V
Sbjct: 990  QSSKNVLLLSLRAGNAGLTLTCANHVFIM-DPFWNPFVEEQAMGR-----AHRIGQTREV 1043

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FV+ ++   T++  +++   +K  + +  L+
Sbjct: 1044 FVHRVLIAGTVENRIMELQESKKHLIESALD 1074


>gi|171687883|ref|XP_001908882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943903|emb|CAP69555.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1700

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQ- 85
           LANG+   ++          K+  L+ ++ K   +   +++       L       R++ 
Sbjct: 769 LANGSGRREDAVKGLITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILADYLRIRG 828

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +              I  +N              + G G+NL    + ++ +   W+
Sbjct: 829 YQFQRLDGTIPAGPRRLAINHFNAEDSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWN 887

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +   Q + R       + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 888 PQADLQAMAR-----AHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 939


>gi|78185742|ref|YP_378176.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78170036|gb|ABB27133.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 1063

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 34/216 (15%)

Query: 8    QRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Q+ LY     + ++A  +A          +   +  Q+ N       E         +  
Sbjct: 830  QKSLYNKTVEDTLDAIATAPRGQRHGQVLALLTRLKQICNHPALAQREGAVDSEFLGRSA 889

Query: 58   ALE-----VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC-TI 101
             L      +          ++   F      LQ    Q          G T   D    +
Sbjct: 890  KLMRLEEILEEVIEAGDRALLFTQFAEWGHLLQAWMQQRWKSEVPFLHGGTRKSDRQAMV 949

Query: 102  QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + E      L      + G GLNL    + +     WW+     Q  +R       + 
Sbjct: 950  DRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHVDRWWNPAVENQATDR-----AYRI 1003

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G    V V+  + + +++E + Q +R K+ + + ++
Sbjct: 1004 GQTNRVMVHKFVTRGSVEEKIDQMIREKARMAEDVI 1039


>gi|149248412|ref|XP_001528593.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448547|gb|EDK42935.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1926

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYC---DLQGENIEAF--NSASKTVKCLQLANG-AVYYDEEKHWKEVHDE- 54
            + Y +  +       D Q  ++     N+ ++ ++  ++ N   VY D E       +  
Sbjct: 1180 RLYQQMLKYNVLYSGDPQNPDVAKPIKNANNQIMQLKKICNHPFVYEDVENFINPTSENN 1239

Query: 55   --------KIKALEVIIEK--ANAAPIIVAYH------FNSDLARLQK----AFPQGRTL 94
                    K + L+ ++ K       +++ +          D  RL+         G   
Sbjct: 1240 DLIWRVAGKFELLDKVLPKFKQTGHKVLIFFQMTQIMDIMEDFLRLRNLKYMRLDGGTKA 1299

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1300 DDRTELLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1353

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1354 QDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1400


>gi|118089323|ref|XP_420137.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 1204

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
           EE H   V  +  K L  IIE+     ++ +  F   + R+         L +    I  
Sbjct: 472 EEGHRTLVFSQSRKML-DIIER-----VLSSRQFK--IMRIDG---TVTHLTEREKRINA 520

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   K   +        G G+ L    N +V F   W+     Q ++R       + G K
Sbjct: 521 FQSNKDYSVFLLTTQVGGVGITLT-AANRVVIFDPSWNPATDAQAVDR-----AYRIGQK 574

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V +Y LI   T++E + +R   K ++
Sbjct: 575 ENVVIYRLITCGTVEEKIYRRQVFKDSL 602


>gi|255718763|ref|XP_002555662.1| KLTH0G14498p [Lachancea thermotolerans]
 gi|238937046|emb|CAR25225.1| KLTH0G14498p [Lachancea thermotolerans]
          Length = 1436

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 674 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLNIKGVNYQRLDGTVPSAQRRI 733

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 734 SIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 787

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 788 RIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 826


>gi|258576739|ref|XP_002542551.1| hypothetical protein UREG_02067 [Uncinocarpus reesii 1704]
 gi|237902817|gb|EEP77218.1| hypothetical protein UREG_02067 [Uncinocarpus reesii 1704]
          Length = 1870

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++       L  +Q                       K    + ++N +    +L  
Sbjct: 1649 HRALIFCQMKEMLDIVQNDVLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLL 1708

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +  G GLNL  G + ++F    W+ ++  Q ++R       + G K+ V VY LI + 
Sbjct: 1709 TTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR-----AHRIGQKKVVNVYRLITRG 1762

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E +L   R K  +   ++N
Sbjct: 1763 TLEEKILNLQRFKIDVASTVVN 1784


>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
          Length = 997

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           K     +++       L  +++A               T  K    I+ +      P+  
Sbjct: 481 KEEGHKVLIFSQTRLMLDEIEEALTNKGVHFARMDGTVTASKREAIIKGFQSKDGPPIFL 540

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G GLNL    + ++     W+     Q ++R+      + G ++ V +Y LI  
Sbjct: 541 MTTKVGGIGLNLTN-ASRVIIADPSWNPSLDNQCVDRV-----YRIGQEKNVIIYRLITS 594

Query: 174 NTIDELVLQRLRTKSTIQDL 193
            TI+E + ++  +K  I   
Sbjct: 595 CTIEERIYEKQVSKEGIFKA 614


>gi|221052138|ref|XP_002257645.1| DNA repair protein rad54 [Plasmodium knowlesi strain H]
 gi|193807475|emb|CAQ37981.1| DNA repair protein rad54, putative [Plasmodium knowlesi strain H]
          Length = 1052

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
             K + L  +   I++     +++  ++   L  ++               G  + K   
Sbjct: 543 SCKFQLLHFLLKTIKQNTTDKVVIVSNYTQTLDYMEILCRENSYKFVRLDGGINIKKRHK 602

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++     I +      S G G+NL    N LV     W+    +Q + R+      +
Sbjct: 603 VINDFTHSNDIFIFLLSSKSGGCGINL-ISSNRLVLLDPDWNPANDKQALARVW-----R 656

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G K+  ++Y      TIDE V QR  +K  +  +++
Sbjct: 657 EGQKKICYIYRFFCTGTIDEKVYQRQISKDGLSSMIV 693


>gi|71005328|ref|XP_757330.1| hypothetical protein UM01183.1 [Ustilago maydis 521]
 gi|46096734|gb|EAK81967.1| hypothetical protein UM01183.1 [Ustilago maydis 521]
          Length = 1692

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 39/232 (16%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSAS------KTVKCLQL---ANGAVYYD-------- 43
            +K Y + ++        +N  A   A            +QL    N    ++        
Sbjct: 1041 LKLYQQMKKHKMILSGEDNSTAGKKAKPQGIRGLQNAIMQLRKICNHPYVFEQVELAINP 1100

Query: 44   --EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQ 90
              E          K + L+ ++ K  A    +++ +   + +  +         +     
Sbjct: 1101 TKENGPDLYRVAGKFELLDRLLPKLFATKHRVLIFFQMTAIMDIMEDFLRYRGFKYLRLD 1160

Query: 91   GRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G T  D     ++ +N       +      + G GLNLQ   + ++ +   W+  +  Q 
Sbjct: 1161 GSTKPDDRSQLLKLFNAPGSDYFVFILSTRAGGLGLNLQ-SADTVIIYDSDWNPHQDLQA 1219

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   R  + G K  V +  L+ + +++E +L R + K  I+  ++ A K
Sbjct: 1220 -----QDRAHRIGQKMEVRILRLVTEKSVEETILARAQDKLEIEGKVIQAGK 1266


>gi|156848828|ref|XP_001647295.1| hypothetical protein Kpol_1002p85 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117980|gb|EDO19437.1| hypothetical protein Kpol_1002p85 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1070

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            QR+ Y  +  ++++A N A+             +QL               G  Y  +E
Sbjct: 380 MQRKWYKQILEKDLDAVNGANGNKESKTRLLNIVMQLRKCSNHPYLFDGAEPGPPYTTDE 439

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                     +    +   KA  + +++    +  L  L+              G T  +
Sbjct: 440 HLVYNSEKLLVLDKLLKKLKAEGSRVLIFSQMSRILDILEDYCYFRGYEYCRIDGSTAHE 499

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       L      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 500 DRIQAIDDYNAPDSNKFLFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 555

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 556 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 596


>gi|224062717|ref|XP_002197759.1| PREDICTED: chromodomain helicase DNA binding protein 2 [Taeniopygia
           guttata]
          Length = 1826

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 784 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 843

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 844 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 897

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 898 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 938


>gi|268567385|ref|XP_002639966.1| Hypothetical protein CBG10790 [Caenorhabditis briggsae]
          Length = 1463

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 31/218 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN-----GAVYYDEEKHWKEV--HDE 54
           K Y +  + +   + G      N   +  KC   A+       +Y D +   +++     
Sbjct: 669 KNYRELSKGVKGSINGF----VNLVMELKKCCNHASLTRQYDYIYDDAQGRLQQLLKSSG 724

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDPCTIQ 102
           K+  L+ ++ +       +++       L  LQ     + FP  R       D     + 
Sbjct: 725 KLILLDKLLCRLRDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALD 784

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G G+NL    + ++ F   W+ +   Q + R       + G
Sbjct: 785 HYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIG 838

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 839 QTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 876


>gi|297807991|ref|XP_002871879.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317716|gb|EFH48138.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1061

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 26/190 (13%)

Query: 28  KTVKCLQLAN------GAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
            T++  +  N      G  Y   +K        K + L+ ++ K       I++      
Sbjct: 662 LTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTR 721

Query: 80  DLARLQ---------KAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            +  L+              G T  D+    ++++NE + P  +      + G GLNLQ 
Sbjct: 722 LIDLLEIYLTLNDYMYLRLDGTTKTDQRGVLLKQFNEPESPYFMFLLSTRAGGLGLNLQT 781

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ F   W+ +  QQ  +R       + G K+ V V+ L++  +I+E++L+R + K
Sbjct: 782 -ADTIIIFDSDWNPQMDQQAEDR-----AHRIGQKKEVRVFVLVSIGSIEEVILERAKQK 835

Query: 188 STIQDLLLNA 197
             I   ++ A
Sbjct: 836 MGIDAKVIQA 845


>gi|301095371|ref|XP_002896786.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108669|gb|EEY66721.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1092

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 44/231 (19%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSAS------KTVKCLQLAN-------------GA 39
           K Y    + QRE Y  +   +    N+             +QL               G 
Sbjct: 383 KLYVGLSEMQREWYMRVLHRDATHLNAIGGSDRVRLLNILMQLRKVCNHPYLFEGAEPGP 442

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF--------- 88
            Y +    W+  +  K+  L  ++   +A  + +++     S +  L+            
Sbjct: 443 PYQEGPHLWE--NCGKMTLLHKLLPKLQAQGSRVLIFCQMTSMMDILEDYMRYFSHDYCR 500

Query: 89  PQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             G T  +D    ++E+NE             + G G+NL    +I++ F   W+ +   
Sbjct: 501 LDGSTKGEDRDNMMEEFNEPGSSKFCFLLSTRAGGLGINL-ATADIVILFDSDWNPQVDL 559

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q ++R       + G  + V V+  I   T++E +++R   K  +   ++ 
Sbjct: 560 QAMDR-----AHRIGQTKIVRVFRFITDGTVEEKIVERAERKLYLDAAIIQ 605


>gi|67923123|ref|ZP_00516613.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67855021|gb|EAM50290.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 1046

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 92   RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            R + +     +   +   P +      + G GLNL    N +     WW+     Q  +R
Sbjct: 918  RRVQRQEMIDRFQQDPNGPRIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR 976

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   + G KR V V+  +   T++E + + L +K  + +  ++A
Sbjct: 977  -----AFRLGQKRNVQVHKFVCTGTLEEKINEMLESKQKLAEQTVDA 1018


>gi|309361198|emb|CAP30097.2| hypothetical protein CBG_10790 [Caenorhabditis briggsae AF16]
          Length = 1465

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 31/218 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN-----GAVYYDEEKHWKEV--HDE 54
           K Y +  + +   + G      N   +  KC   A+       +Y D +   +++     
Sbjct: 671 KNYRELSKGVKGSINGF----VNLVMELKKCCNHASLTRQYDYIYDDAQGRLQQLLKSSG 726

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRT-----LDKDPCTIQ 102
           K+  L+ ++ +       +++       L  LQ     + FP  R       D     + 
Sbjct: 727 KLILLDKLLCRLRDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALD 786

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G G+NL    + ++ F   W+ +   Q + R       + G
Sbjct: 787 HYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIG 840

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 841 QTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 878


>gi|240278065|gb|EER41572.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1028

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCT 100
             + +   KI+ L  I++  +     IV   F S L +++           R        
Sbjct: 785 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 844

Query: 101 IQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++E       N  K  +L     +   GLNL    + +V    +W+    +Q I+R+   
Sbjct: 845 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV--- 900

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 901 --HRLNQTVDVKIYKLTIKNTVEERIVDLQERKRELANATIEG 941


>gi|149636761|ref|XP_001505482.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 1393

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 27/178 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDE-------KIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
           Q  NG  +Y +     ++ D+       K+  L  ++++        +V       L  +
Sbjct: 436 QDENGTDHYSDINRIGQLPDQTLMEESGKLMFLMALLKRLQREGHQTLVFSQSRKMLDII 495

Query: 85  QK-----AFPQGRT------LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNIL 132
           ++      F   R       L +    I  + + K   +        G GL L      +
Sbjct: 496 ERLLTNTHFKILRVDGTIAQLGEREKRISLFQKNKDYSVFLLTTQVGGVGLTLT-AATRV 554

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           V F   W+     Q ++R       + G K  V +Y LI   T++E + +R   K ++
Sbjct: 555 VIFDPSWNPATDAQAVDR-----AYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSL 607


>gi|5917757|gb|AAD56025.1|AF181828_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
          Length = 918

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 426 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 485

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 486 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 539

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 540 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 572


>gi|73951145|ref|XP_859323.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 11 [Canis familiaris]
          Length = 1820

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|241720419|ref|XP_002413614.1| E1A-binding protein p400, putative [Ixodes scapularis]
 gi|215507430|gb|EEC16922.1| E1A-binding protein p400, putative [Ixodes scapularis]
          Length = 2377

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 23/156 (14%)

Query: 55   KIKALEVIIEKANA--APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K++ L+ ++ +       +++       L  L++                 +D+    ++
Sbjct: 1166 KLQVLDRLLWQLRGGQHRVLIFTQMTRMLDILEQFLNYHGHTYLRLDGSTRVDQRQALME 1225

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N  + I        S G G+NL  G + +VF+   W+     Q  +R       + G 
Sbjct: 1226 RFNADRRIFCFILSTRSGGIGVNLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQ 1279

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V +Y      T++E +L++   K  + D+ +  
Sbjct: 1280 TRDVHIYR----QTVEENILKKATQKRMLGDVAIEG 1311


>gi|219122221|ref|XP_002181449.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407435|gb|EEC47372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 707

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 35/180 (19%)

Query: 52  HDEKIKAL-EVIIEKANAAP---IIVAYHFNSDLA-------------------RLQKAF 88
              KI+ L + ++      P    +V   F + L                    R+    
Sbjct: 529 TSSKIEVLVQELVAMRKGRPGSKALVFSQFVNMLDLTRWRIHSDPCLADLGLGVRILHGG 588

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              ++ D      +E  +  + +L     + G  LNL    + +     WW+     Q I
Sbjct: 589 MDVKSRDATLQAFRE--DPSVRVLLMSLKAGGVALNLTV-ASEVYLLDNWWNPAAEMQAI 645

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKETIH 204
           +R       + G  R +     IA+ T++E VLQ    K  + D  +     +LK  T+H
Sbjct: 646 DR-----THRLGQYRPIRAVRFIAEGTVEERVLQLQEKKRLVFDGTVGRDAGSLKMLTVH 700


>gi|156552758|ref|XP_001599976.1| PREDICTED: similar to ENSANGP00000008413 [Nasonia vitripennis]
          Length = 1890

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 31/150 (20%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT--------IQEWN-E 106
            +KA+  I+E               DL R+    P    L  D           +  +N +
Sbjct: 1682 LKAMLDIVE--------------HDLLRM--HLPTVTYLRLDGSVPAALRHSVVARFNAD 1725

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +L       G GLNL  G + ++F    W+  +  Q ++R       + G K+ V 
Sbjct: 1726 PSIDVLLLTTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVN 1779

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY LI + T++E ++   + K    + +++
Sbjct: 1780 VYRLITRQTVEEKIMGLQKFKLLTANTIIS 1809


>gi|327264196|ref|XP_003216901.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
           carolinensis]
          Length = 887

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             H  EV   K+  L+ ++    A    +++     + L  LQ              G  
Sbjct: 328 GDHLIEV-SGKLNLLDNLLAFLYAGGHRVLLFSQMTNMLDILQDYMDYRGYSYERLDGSV 386

Query: 94  LDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++    I+ + +  I +      + G G+NL    + +VF    ++ +   Q I R  
Sbjct: 387 RGEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLT-SADTVVFVDNDFNPQNDLQAIAR-- 443

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V +  LI ++TI+E++ +R  +K  + + ++  
Sbjct: 444 ---AHRIGQNKPVKIIRLIGRDTIEEIIYRRAASKLQLTNTIIEG 485


>gi|325181909|emb|CCA16363.1| ChromodomainhelicaseDNAbinding protein 8 putative [Albugo laibachii
            Nc14]
          Length = 2334

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
            +A    I++   F   L  ++          +        +     I  +N  K      
Sbjct: 1549 RAEEKKILIFSQFKMMLDVIEDLCHLRGYQIERMDGSVRGNLRQAAIDRFNNPKSDTFAF 1608

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    ++++ +   W+ +   Q + R       + G  ++V +Y L+ 
Sbjct: 1609 LLSTRAGGVGINL-IAASVVILYDSDWNPQNDLQAVARC-----HRIGQTKSVNIYRLVT 1662

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + T +  +      K  +   +  
Sbjct: 1663 KKTYEAQMFDIASKKLGMHHAVFE 1686


>gi|319441078|ref|ZP_07990234.1| putative DNA/RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 1050

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 24/190 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEKA--NAAPIIVAYHFNS 79
            +      ++ N   ++  +             K++ L  I+ +A      ++V   F S
Sbjct: 795 LTALTHFKEICNHPAHFSGDGSGIRKDGRHRSGKVERLYRIVAEALEQDRRVLVFTQFPS 854

Query: 80  ----------DLARLQKAFPQGRTLDKDPCT-IQEWNEGKIP-LLFAHPASCGHGLNLQY 127
                     ++  ++     G    K     +  +     P ++     + G G+ L  
Sbjct: 855 FGRMLAPDMEEVFGIEVPMLHGGLNRKARVDLVNRFQSENGPKVMILSTRAGGTGITLTR 914

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             ++++    WW+     Q  +R       + G  + V V+ LIA  T+DE +   L  K
Sbjct: 915 -ASVVIHIDRWWNPAVEDQATDR-----AYRIGQGQDVRVHKLIAVGTLDERINDILGAK 968

Query: 188 STIQDLLLNA 197
             +   +++A
Sbjct: 969 RDLAGDVVSA 978


>gi|145611352|ref|XP_368791.2| hypothetical protein MGG_00453 [Magnaporthe oryzae 70-15]
 gi|145018655|gb|EDK02934.1| hypothetical protein MGG_00453 [Magnaporthe oryzae 70-15]
          Length = 901

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 45  EKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDP 98
           E++ + V   KI+ L  I+ ++ +    IV   F S L  +     ++ F   R      
Sbjct: 682 EENGRVVPSAKIRQLLEILHKEVHEHKFIVFSQFTSMLDLVAPFFDREGFKYTRYEGSMK 741

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++E       N+ K  +L         GLNL     +++    +W+    +Q I+R+ 
Sbjct: 742 NDLREESLHSLRNDPKTRILLCSLKCGSLGLNLTAATRVVIL-EPFWNPFVEEQAIDRV- 799

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIHV 205
                +      V VY L    +++E +L+    K  + +  +     KK+ + +
Sbjct: 800 ----HRLTQTVDVIVYKLTVGKSVEERILELQNKKRMLAEQAIEGGMKKKDALKL 850


>gi|157116391|ref|XP_001658454.1| helicase [Aedes aegypti]
 gi|108876505|gb|EAT40730.1| helicase [Aedes aegypti]
          Length = 814

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 31  KCLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK 86
           K LQL        + +   +  V   K + L+ ++ K       +++   F   L  ++K
Sbjct: 595 KLLQLKEKYTSLYDLRIPDQLIVASGKFRQLDELLPKLKREGHRVLIFSQFVMMLDIMEK 654

Query: 87  AFP---------QGRTLDKDPCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                        G+T   +   + +    +  I +      + G G+NL     +++  
Sbjct: 655 YLDIRHYGFLRLDGQTAVTERQEMIDLYNQDPNIFIFLLSTKAGGLGINLTAADTVIIHD 714

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  +     ++    R  + G  + V +Y L+++ TI+E +L   + K  ++  + 
Sbjct: 715 ------IDFNPYNDKQAEDRSHRMGQTKPVTIYKLVSEGTIEEGMLMIAQEKLQLEKDVT 768

Query: 196 N 196
           +
Sbjct: 769 D 769


>gi|12853471|dbj|BAB29753.1| unnamed protein product [Mus musculus]
          Length = 473

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 144 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 203

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 204 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 257

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 258 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 290


>gi|221480872|gb|EEE19293.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           GT1]
 gi|221501605|gb|EEE27375.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           VEG]
          Length = 1200

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 82/219 (37%), Gaps = 31/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDE---------EKHWKEV 51
           + Y     +    LQG          +  ++  +  N    +D           +H  E 
Sbjct: 526 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIE- 584

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-----DKDPC 99
           +  K++  + ++ +        ++       +  L+     + F   R       D+   
Sbjct: 585 NAGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDR 644

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N     IP+      + G G+NL    + ++ +   W+ +   Q ++R+      
Sbjct: 645 QIEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQVDLQAMDRV-----H 698

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K AV VY L+ ++TI++ +++R   K  +   ++ 
Sbjct: 699 RIGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQ 737


>gi|109088973|ref|XP_001107536.1| PREDICTED: DNA excision repair protein ERCC-6 [Macaca mulatta]
          Length = 1496

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 833 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 890

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 891 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 949

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 950 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 996


>gi|73951139|ref|XP_859203.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 8 [Canis familiaris]
          Length = 1839

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|195591505|ref|XP_002085481.1| GD14801 [Drosophila simulans]
 gi|194197490|gb|EDX11066.1| GD14801 [Drosophila simulans]
          Length = 893

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
              K+  L  ++++   +   +++       L  + + F +G              D   
Sbjct: 585 ASGKLDLLSKMLKQLKKDNHRVLLFSQMTKMLN-ILEHFLEGEGYQYDRIDGAIRGDLRQ 643

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N+   +  +      + G G+NL    + ++ F   W+     Q       +R 
Sbjct: 644 KAIDRFNDPGSEQFVFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDVQA-----FSRA 697

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K+ V +Y  +  N+++E ++Q  + K  +
Sbjct: 698 HRMGQKKKVMIYRFVTHNSVEERIMQVAKRKMML 731


>gi|171688350|ref|XP_001909115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944137|emb|CAP70247.1| unnamed protein product [Podospora anserina S mat+]
          Length = 961

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 49  KEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGR-----------TL 94
           +E    K +AL  I++       + +I+   + S L  +Q+   +               
Sbjct: 784 RETKSSKTEALLKILQATLKKEGSKVIIFSQWTSFLNVIQRQLDEAGYTYTRIDGSMNAT 843

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +D        +    ++ A  A C  GLNL    + +V    WW      Q ++R+   
Sbjct: 844 KRDVAIKALDEDPNTRIMLASLAVCSVGLNL-VSADTVVLADSWWAPAIEDQAVDRV--- 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G  R   V+ L+ + T++E VL     K  +
Sbjct: 900 --HRLGQTRETTVWRLVMEGTVEERVLDIQAEKREL 933


>gi|281211743|gb|EFA85905.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1675

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
               K   ++ I+   KA+   +++       +  + + F           G T  ++   
Sbjct: 984  ASGKFDMMDQILIKMKASGHRVLIFTQMTEIINIMVEYFSIRDWGYLRLDGSTKPEERSR 1043

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + EWN    P  +      + G G+NLQ   + ++ F   W+ +   Q  +R       
Sbjct: 1044 LVVEWNRKDSPYFIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQMDLQAQDRC-----H 1097

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G    V V+ LI+ +TI+E +L+R   K  +   ++ A
Sbjct: 1098 RVGQVNRVNVFRLISASTIEERILERATDKLDLDAKIIQA 1137


>gi|255076351|ref|XP_002501850.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517114|gb|ACO63108.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1989

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 26/181 (14%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           DL G    +   A        LA+         H   V  +  +A+  ++E A  A    
Sbjct: 777 DLGGAPDASGKCAFLMSLLRHLASS-------GHRTLVFSQS-RAMLDVLESAARAD--- 825

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
                 DL R+    P     D+    ++ +     IPL        G GL L    + +
Sbjct: 826 ----GHDLVRIDGKVP----ADERHARVERFQSTPSIPLALLTSQVGGLGLTLT-AADRV 876

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V +   W+     Q ++R       + G  + V VY L+   T++E V +R   K  +  
Sbjct: 877 VIYDPAWNPAADSQSVDR-----AYRIGQTKDVVVYRLVTCGTVEEKVYRRQVFKGGLSR 931

Query: 193 L 193
            
Sbjct: 932 A 932


>gi|238504030|ref|XP_002383247.1| TBP associated factor (Mot1), putative [Aspergillus flavus NRRL3357]
 gi|220690718|gb|EED47067.1| TBP associated factor (Mot1), putative [Aspergillus flavus NRRL3357]
          Length = 1663

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            L  GA Y    +        ++K +  I++      ++ +  +                 
Sbjct: 1434 LGTGASYVSPHRALIF---CQMKEMLDIVQSEVLKKLLPSVQYL--------RLDGSVEA 1482

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    +  +N +     L    +  G GLNL  G + ++F    W+ ++  Q ++R   
Sbjct: 1483 TKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR--- 1538

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1539 --AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1579


>gi|268574810|ref|XP_002642384.1| Hypothetical protein CBG18388 [Caenorhabditis briggsae]
          Length = 1016

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN- 105
           K L  I  +     +++   F S L  L+          K       +      I E+N 
Sbjct: 798 KMLPEI--QNKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNL 855

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      + G G+NL    +I++   + ++    +Q  +R       + G ++ V
Sbjct: 856 SKDLFVFLLSTKAGGLGINLTSANHIIIH-DIDFNPYNDKQAEDRC-----HRMGQEKPV 909

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V  L+++ T++  +L   + K  ++  + + +K +
Sbjct: 910 HVTRLVSKCTVEIGMLALAKKKLQLEKQVTDGVKGQ 945


>gi|19111970|ref|NP_595178.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723497|sp|Q10332|YBMA_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C582.10c
 gi|5420446|emb|CAB46673.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe]
          Length = 830

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 69  APIIVAYHFNSDLARLQKAFPQG-------------RTLDKDPCTIQEWNEGKIPLLFAH 115
              I+   F + L  +     +              R  +K    ++   +    +L   
Sbjct: 671 RKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRS--DSGTQVLLCS 728

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 GLNL    + ++   +WW+    +Q I+R+      + G +R V VY L+ +NT
Sbjct: 729 LKCGALGLNLTC-ASRVILCDVWWNPAIEEQAIDRV-----HRIGQRRDVLVYKLVVENT 782

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           I+E +++    K  +    L   KK  
Sbjct: 783 IEEKIVELQNLKRDLAKQALGDGKKSV 809


>gi|326479756|gb|EGE03766.1| SNF2 family helicase [Trichophyton equinum CBS 127.97]
          Length = 1050

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+ L  ++++ +     IV   F S L +++     G           R   ++  
Sbjct: 808 TSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREAS 867

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 868 LNRLRNSSGTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 921

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY L  + T++E +L+    K  +    +  
Sbjct: 922 NQTIDVKVYKLTIKGTVEERILELQERKRELAKSAIEG 959


>gi|255956043|ref|XP_002568774.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590485|emb|CAP96675.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1331

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 25/154 (16%)

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWN 105
            L  II +A      I+V       L  L +   + +           T  +        N
Sbjct: 1090 LNEIINQAIAVGDKILVFSSSIPTLNYLAQVMEKTQRKYALLEGTIPTTKRLELVRGFNN 1149

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVF---FSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    +      + G GLN+Q    +++F   F+  W     +Q I R       + G K
Sbjct: 1150 DPSTYVFLISTKAGGVGLNIQTANRVVIFDFEFNPTW----EEQAIGR-----AYRIGQK 1200

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + VFVY L+A  T++E +  +   KS +   LL+
Sbjct: 1201 KKVFVYRLVAAGTVEEKIFCKATFKSQLAGRLLD 1234


>gi|189192520|ref|XP_001932599.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974205|gb|EDU41704.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1002

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N  +             +QL               G  Y  +
Sbjct: 437 DMQVQWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 496

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++++  A  + +++    +  L  +         Q     G T
Sbjct: 497 EHLV--TNAAKMVMLDKLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGST 554

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+   +  L      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 555 AHEDRIQAIDDYNKEGSEKFLFLLTTRAGGLGINLT-SADIVVLFDSDWNPQADLQAMDR 613

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+V+  + +  I+E VL+R   K  +  L++   + +
Sbjct: 614 -----AHRIGQTKQVYVFRFVTEMAIEEKVLERAAQKLRLDQLVIQQGRTQ 659


>gi|156051220|ref|XP_001591571.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980]
 gi|154704795|gb|EDO04534.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1410

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNS---------DLARLQKAFPQGRTL-DKDPCTIQ 102
           K + L+ I+   +A    +++ +   +         D   ++     G T  D     ++
Sbjct: 843 KFELLDRILPKYQATGHRVLMFFQMTAIMDIMGEFLDYRGIKFMRLDGTTKSDDRSLLLK 902

Query: 103 EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N    P         + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 903 EFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIG 956

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI+ N+++E +L+R + K  +   ++ A +
Sbjct: 957 QKNEVRILRLISSNSVEEKILERAKFKLDMDGKVIQAGR 995


>gi|119622570|gb|EAX02165.1| chromodomain helicase DNA binding protein 2, isoform CRA_d [Homo
           sapiens]
          Length = 1857

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 753 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 812

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 813 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 866

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 867 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 907


>gi|73951147|ref|XP_859355.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 12 [Canis familiaris]
          Length = 1851

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|238624120|ref|NP_001121770.2| chromodomain helicase DNA binding protein 1 [Danio rerio]
          Length = 1693

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
              K+  L+ ++ +       +++       L  L +     + L          +    
Sbjct: 773 SSGKLILLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQ 832

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 833 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 886

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           + G K+ V +Y L+ + +++E +++R + K  +  L+   ++   K  +H 
Sbjct: 887 RIGQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHT 937


>gi|67604075|ref|XP_666591.1| RIKEN cDNA A730019I05 gene [Cryptosporidium hominis TU502]
 gi|54657614|gb|EAL36361.1| RIKEN cDNA A730019I05 gene [Cryptosporidium hominis]
          Length = 2267

 Score = 92.3 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDP-CTIQEWNEGKIP--LL 112
            KA    +++   F   L  L++             G     D    I  +N       + 
Sbjct: 1710 KAEGHRVLIFSQFIQTLTLLEELVEHHGWGYERLDGSIRGTDRNAAITRFNAEDSDKFVF 1769

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ F   W+ +   Q   R       + G  R V VY LI 
Sbjct: 1770 LLSTRAGGLGINLT-SADTVIIFDSDWNPQNDVQACAR-----AHRIGQTRDVKVYRLIT 1823

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
              T +  + +R   K  +   + 
Sbjct: 1824 ARTYEAEMFERAGRKLGLNTAVF 1846


>gi|320034534|gb|EFW16478.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 957

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 39  AVYYDEEKHWK--EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           A+  D+ K     E    KI+AL  I+     A  +  +V   + S L  ++    +   
Sbjct: 768 ALGEDDSKVDVDPEESSSKIQALIKILTAQGQAPGSKTVVFSQWTSFLDLIEPQLVKHNI 827

Query: 91  --GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              R   K   T ++       N+    ++ A    C  GLNL    N ++    WW   
Sbjct: 828 TFTRIDGKRSSTKRDVAMATLTNDPNCTVMLASLNVCSVGLNL-VAANQVILTDSWWAPA 886

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q ++R+      + G KR   V+ L+ + +I++ VL   + K  +
Sbjct: 887 IEDQAVDRV-----YRLGQKRPTTVWRLVMEGSIEDRVLDIQKRKRDL 929


>gi|303318791|ref|XP_003069395.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109081|gb|EER27250.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 956

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 39  AVYYDEEKHWK--EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           A+  D+ K     E    KI+AL  I+     A  +  +V   + S L  ++    +   
Sbjct: 767 ALGEDDSKVDVDPEESSSKIQALIKILTAQGQAPGSKTVVFSQWTSFLDLIEPQLVKHNI 826

Query: 91  --GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              R   K   T ++       N+    ++ A    C  GLNL    N ++    WW   
Sbjct: 827 TFTRIDGKRSSTKRDVAMATLTNDPNCTVMLASLNVCSVGLNL-VAANQVILTDSWWAPA 885

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q ++R+      + G KR   V+ L+ + +I++ VL   + K  +
Sbjct: 886 IEDQAVDRV-----YRLGQKRPTTVWRLVMEGSIEDRVLDIQKRKRDL 928


>gi|224013614|ref|XP_002296471.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
 gi|220968823|gb|EED87167.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
          Length = 690

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKD 97
            +   K+  L+ ++ K       +++   F   L  +         +     GR   ++ 
Sbjct: 418 VMSSGKMVLLDKLLPKLRQEGHKVLIFSQFVKMLDLISDYCDFREFRYERLDGRVRGNER 477

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +  E    +      + G G+NL    +I + F   W+ +   Q   R      
Sbjct: 478 QKAIDRFETEKDSFVFLLSTRAGGVGINLT-AADICIIFDSDWNPQNDVQAQARC----- 531

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V +Y L+   T ++ +  R   K  ++  +L
Sbjct: 532 HRIGQTKDVMIYRLVTSRTFEQEMFDRASKKLGLEQAVL 570


>gi|123495365|ref|XP_001326721.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121909640|gb|EAY14498.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1587

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIPLL-- 112
           K++   I++     + L  L+              G+   +K    I ++NE    L   
Sbjct: 544 KSDGHRILIFSQMTNLLDILEDYLAMKGYQSCRIDGKVKGEKRQGIIDKFNEPNSELFVC 603

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY L+ 
Sbjct: 604 LLSTRAGGIGINL-NSADTVIIFDSDWNPQNDLQAQARC-----HRIGQTKTVQVYRLLT 657

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           + T ++ +      K  +   +L+ +
Sbjct: 658 KGTYEQTMFDSASRKLGLGHAILDKM 683


>gi|169607196|ref|XP_001797018.1| hypothetical protein SNOG_06654 [Phaeosphaeria nodorum SN15]
 gi|111065365|gb|EAT86485.1| hypothetical protein SNOG_06654 [Phaeosphaeria nodorum SN15]
          Length = 1201

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 18/162 (11%)

Query: 51   VHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQE- 103
                KI+ L  I+EK      +IV   F S L  +     ++ +   R        ++E 
Sbjct: 973  TPSTKIRQLLSILEKETPDHKVIVFSQFTSMLDLIEPFLRRQGYNFTRYDGSMRNDLREA 1032

Query: 104  -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                   + +  +L         GLNL    + +V    +W+    +Q I+R+      +
Sbjct: 1033 SLHKLREDKRTRVLLCSLKCGSLGLNLT-AASRVVIMEPFWNPFVEEQAIDRV-----HR 1086

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  V VY L   N+++E +L+    K  + +  L   K 
Sbjct: 1087 LNQTVDVTVYRLSIHNSVEERILELQEAKRKLANAALEGGKA 1128


>gi|121701939|ref|XP_001269234.1| chromodomain helicase (Chd1), putative [Aspergillus clavatus NRRL
           1]
 gi|119397377|gb|EAW07808.1| chromodomain helicase (Chd1), putative [Aspergillus clavatus NRRL
           1]
          Length = 1506

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L      +G T  +           
Sbjct: 743 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYTYQRLDGTIPAVSRR 802

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 803 LAIEHFNAPDSSDFCFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 856

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 857 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 887


>gi|320586895|gb|EFW99558.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1541

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
            +   K++ L  +++  + N    +V   F   L  L++                 +++  
Sbjct: 1009 LQSGKVQELLRLVQKFQKNGDRALVFTRFARVLNILRECMTTSGLDYVSLEGATRVEERQ 1068

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    IP+      S G G+NL    N ++ F    + ++  Q        R  
Sbjct: 1069 AIIDEFNGNADIPVFLLTTGSGGTGINLT-AANKVIIFDQSDNPQDDVQA-----ENRAH 1122

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  R V V  L+ + TI+ELV +  +TK  + + +
Sbjct: 1123 RLGQTRDVEVIKLVTRGTIEELVYKACQTKLELAERV 1159


>gi|154303593|ref|XP_001552203.1| hypothetical protein BC1G_08681 [Botryotinia fuckeliana B05.10]
 gi|150854475|gb|EDN29667.1| hypothetical protein BC1G_08681 [Botryotinia fuckeliana B05.10]
          Length = 274

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
             K +AL  I++  +  P   +++   + S L  +QK   Q                +D 
Sbjct: 100 SSKTEALMQIVKVTHNDPLSKVVIFSQWTSFLNIVQKQLEQAGIKFARIDGSMTAPQRDK 159

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 ++ +  +L A  A C  GLNL    + ++    WW      Q ++R+      +
Sbjct: 160 GMNSLESDPECRILLASLAVCSVGLNL-VAADTVILADSWWAPAIEDQAVDRV-----HR 213

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G KR   V+ L+ + +I+E VL+    K  +
Sbjct: 214 LGQKRECKVWRLVMEGSIEERVLEIQGEKRKL 245


>gi|50289791|ref|XP_447327.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526637|emb|CAG60264.1| unnamed protein product [Candida glabrata]
          Length = 1071

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN-SDLARLQKAFPQGRT-LDKDPCTI 101
            E H   +  +  + L  I+E+           F   +L+ ++     G T +      +
Sbjct: 663 SEGHKTLLFTQSRQML-DILEE--------FIKFKEPELSDIRYLRMDGTTSIQVRQTLV 713

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N     +        G G+NL  G N ++ +   W+     Q  ER       + G 
Sbjct: 714 DRFNNESYDVFLLTTRVGGLGVNLT-GANRIIIYDPDWNPSTDLQARERAW-----RIGQ 767

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           KR V +Y L+   TI+E +  R   K  + + +L+  K++
Sbjct: 768 KREVSIYRLMISGTIEEKIYHRQIFKQFLMNKVLSDPKQK 807


>gi|73951151|ref|XP_859429.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 14 [Canis familiaris]
          Length = 1809

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 771 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 830

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 831 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 884

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 925


>gi|325114415|emb|CBZ49972.1| hypothetical protein NCLIV_004490 [Neospora caninum Liverpool]
          Length = 1317

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 37/223 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSA------SKTVKCLQL--ANGAVY---------YDEEKH 47
              Q++LY DL  +N+ A   A            +QL  A    Y          D    
Sbjct: 633 RAMQKQLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFEGYESENADPFGE 692

Query: 48  WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-----D 95
               +  K++  + ++ +        ++       +  L+     + F   R       D
Sbjct: 693 HVIENAGKLRFCDRLLRRLIQEHRRCLIFTQMTKMIDILEDYCRIRMFKYCRIDGNTSGD 752

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I+ +N     IP+      + G G+NL    + ++ +   W+ +   Q ++R+  
Sbjct: 753 ERDRQIEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQVDLQAMDRV-- 809

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K AV VY L+ ++TI++ +++R   K  +   ++ 
Sbjct: 810 ---HRIGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQ 849


>gi|322694613|gb|EFY86438.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1027

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP 98
            E+   K+  L  +I +   N   ++V   ++  +  LQ+             G T   + 
Sbjct: 844  ELDSGKVTKLLELIRQYQENGDRVLVFSKYSRLIELLQEVLALQGVDHRVLMGNTNVSER 903

Query: 99   CT-IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             T I E+NE   IP+      + G G+NL    N ++ F L  + ++  Q        R 
Sbjct: 904  QTLIDEFNEDASIPVFLLTTGAGGTGINLT-AANKVIIFDLSDNPQDDIQA-----ENRA 957

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + G KR V V  LIA  +I+EL+ +  + K  + + +  A   E  H
Sbjct: 958  HRLGQKRDVEVIRLIASQSIEELIYKACQKKIELANKVTGAGALEDTH 1005


>gi|320170019|gb|EFW46918.1| SNF2 superfamily RAD5 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1372

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 19/170 (11%)

Query: 45   EKHWKEVHD--EKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLD-- 95
             + WK        + AL+ +      A  +V   + S +  ++     + F   R     
Sbjct: 1173 NRPWKASTKILALVAALKELWTVEQDAKAVVFSQWTSMMDLIEVEFRHQGFVYVRLDGSL 1232

Query: 96   ---KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +    ++ +  +  + ++     S G GLNL    N +     WW++    Q + R+
Sbjct: 1233 SQPQRERVLEAFQRDPAVKIIIISLFSGGVGLNLTAAAN-VYLMDSWWNVAVENQALHRV 1291

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V   IA  T++  +L+    K  + +  L   K E
Sbjct: 1292 -----HRIGQTKPVIVTRFIAARTVETRMLKIQARKQFLANHALATNKSE 1336


>gi|330913020|ref|XP_003296155.1| hypothetical protein PTT_05138 [Pyrenophora teres f. teres 0-1]
 gi|311331916|gb|EFQ95739.1| hypothetical protein PTT_05138 [Pyrenophora teres f. teres 0-1]
          Length = 1131

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N  +             +QL               G  Y  +
Sbjct: 440 DMQVQWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 499

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++++  A  + +++    +  L  +         Q     G T
Sbjct: 500 EHLV--TNAAKMVMLDKLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGST 557

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+   +  L      + G G+NL    +I+V F   W+ +   Q ++R
Sbjct: 558 AHEDRIQAIDDYNKEGSEKFLFLLTTRAGGLGINLT-SADIVVLFDSDWNPQADLQAMDR 616

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+V+  + +  I+E VL+R   K  +  L++   + +
Sbjct: 617 -----AHRIGQTKQVYVFRFVTEMAIEEKVLERAAQKLRLDQLVIQQGRTQ 662


>gi|301107063|ref|XP_002902614.1| chromodomain protein, putative [Phytophthora infestans T30-4]
 gi|262098488|gb|EEY56540.1| chromodomain protein, putative [Phytophthora infestans T30-4]
          Length = 1748

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 39   AVYYDEEKHWKEV--HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ--------- 85
             V +DE+   K +     K   L+ ++   +     +++   F   L  ++         
Sbjct: 1031 CVGFDEQLRMKILIQASGKTVLLDKLLTKFRQENKKVLIFSQFKIMLDIIEDMCQLRGYS 1090

Query: 86   -KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             +        +     I  +N              + G G+NL    ++++ F   W+ +
Sbjct: 1091 MERLDGSVRGNSRQAAIDRFNSPDSDTFAFLLSTRAGGVGINL-IAASVVILFDSDWNPQ 1149

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q + R       + G  ++V +Y L+ + T +  + +    K  +   +  
Sbjct: 1150 NDLQAVARC-----HRIGQTQSVNIYRLVTKKTYEAQMFEIASKKLGMHHAVFE 1198


>gi|296826190|ref|XP_002850934.1| chromatin remodelling complex ATPase chain ISW1 [Arthroderma otae
           CBS 113480]
 gi|238838488|gb|EEQ28150.1| chromatin remodelling complex ATPase chain ISW1 [Arthroderma otae
           CBS 113480]
          Length = 1113

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSA-----SKT------VKCLQLAN----------GAVYYDE 44
           + Q + Y  +  ++I+A N A     SKT      ++  +  N          G  Y  +
Sbjct: 428 EMQVKWYQKILEKDIDAVNGAQGNRESKTRLVNIVMQLRKCCNHPYLFEGAEPGPPYTTD 487

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L+              G T
Sbjct: 488 EHLI--DNSGKMVILDKLLSRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGST 545

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ F   W+ +   Q ++R
Sbjct: 546 AHEDRIQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQADLQAMDR 604

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 -----AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|226290625|gb|EEH46109.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb18]
          Length = 1332

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
           K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 691 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 750

Query: 54  -----EKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +              L  ++     G T   D
Sbjct: 751 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 810

Query: 98  PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + +E+N    +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 811 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 864

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 865 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 909


>gi|224003061|ref|XP_002291202.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972978|gb|EED91309.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1008

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +++       L  L+                 T +     I E+N+      L    
Sbjct: 469 GHRVLLFTQMTRILDILEDYMHMRGFQYCRIDGNTTYEDREERIDEYNKPDSEKFLFLLS 528

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ   ++++ F   W+ +   Q        R  + G KR V V+ ++ ++T
Sbjct: 529 TRAGGLGINLQT-ADVVILFDSDWNPQADLQA-----QDRAHRIGQKRTVQVFRIVTEDT 582

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           I++ V++R + K  +  +++ 
Sbjct: 583 IEQKVVERAQQKLKLDAMVVQ 603


>gi|156399887|ref|XP_001638732.1| predicted protein [Nematostella vectensis]
 gi|156225855|gb|EDO46669.1| predicted protein [Nematostella vectensis]
          Length = 911

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  L+ ++         I++       L  LQ                  ++     
Sbjct: 681 SGKMLLLDQMVPALKRRGHKILIFSQMTKMLDILQDYCYLRGYQYSRLDGSMKVEDRREE 740

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  + ++ +  +      + G GLNL    + ++ +   W+ +   Q  +R       + 
Sbjct: 741 IDAFASDPEKFIFLLSTRAGGLGLNL-SAADTVIIYDSDWNPQSDLQAQDRC-----HRI 794

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  + + VY L+  NT+D+ +++R  +K  ++ +++
Sbjct: 795 GQTKPILVYRLVTSNTVDQKIVERAASKRKLEKMVI 830


>gi|294874590|ref|XP_002767014.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239868417|gb|EEQ99731.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 417

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 52  HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI+AL    E + +    A  +V   F S L   Q    +             L   
Sbjct: 275 SSSKIEALVAEVEAMRKADGEAKGLVFSSFVSLLELCQYRLHKAGITTLILHGELPLPLR 334

Query: 98  PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ ++     PLL     S G GLNLQ   N +     WW+    QQ  +R      
Sbjct: 335 AKVMKTFSSADTCPLLLISLMSGGEGLNLQV-ANHVFLLDPWWNPAVEQQATQR-----A 388

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  + V V  ++  +TI++ ++   R
Sbjct: 389 HRLGQSKRVQVLKMLTHDTIEDRIVALQR 417


>gi|158301559|ref|XP_321235.4| AGAP001820-PA [Anopheles gambiae str. PEST]
 gi|157012531|gb|EAA01172.5| AGAP001820-PA [Anopheles gambiae str. PEST]
          Length = 1987

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 30/187 (16%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVII----------EKANAAPIIVAYHFNSDLAR 83
            Q+  G    +        H  K+  L+ ++             N    ++     + L  
Sbjct: 1722 QMIVGEFTRNGSSMDDIEHSAKLPVLKQLLLDCGIGTNEDVSVNQHRALIFCQLKAMLDI 1781

Query: 84   -----LQKAFPQGRTLDKDPCT--------IQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
                 L+K  P    L  D           + ++N +  I +L       G GLNL  G 
Sbjct: 1782 VENDLLKKHLPAVSYLRLDGSVPPSTRHHIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GA 1840

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+  +  Q ++R       + G K+ V VY LI + +++E ++   + K  
Sbjct: 1841 DTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLL 1895

Query: 190  IQDLLLN 196
              + +++
Sbjct: 1896 TANTVVS 1902


>gi|302408887|ref|XP_003002278.1| DNA repair protein RAD5 [Verticillium albo-atrum VaMs.102]
 gi|261359199|gb|EEY21627.1| DNA repair protein RAD5 [Verticillium albo-atrum VaMs.102]
          Length = 1130

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
             I AL  +  +      +V   F S L  ++ A  +                    + E
Sbjct: 617 ALISALRELRREHPRMKSVVFSQFTSFLTLIEPALAKSNIKFLRLDGTMAQKARAAVLNE 676

Query: 104 WNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + E     +L     + G GLNL      +     WW      Q I+R+      + G +
Sbjct: 677 FQEANQFTILLLSLRAGGVGLNLTT-AKRVYMMDPWWSFAIEAQAIDRV-----HRMGQE 730

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V VY  I + +++E +L+    K  +   L
Sbjct: 731 DEVKVYRFIVEQSVEERMLKVQERKKFLATSL 762


>gi|117558161|gb|AAI27105.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
          Length = 1493

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 830 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 888 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 946

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 947 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|73951135|ref|XP_859122.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 6 [Canis familiaris]
          Length = 1836

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 798 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 857

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 858 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 911

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 912 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 952


>gi|119592219|gb|EAW71813.1| FLJ20105 protein, isoform CRA_a [Homo sapiens]
          Length = 1127

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDP 98
             K+  L  ++++        +V       L  +++      F   R        L+++ 
Sbjct: 336 SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREK 395

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 396 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 449

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 450 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 481


>gi|66357154|ref|XP_625755.1| chromodomain-helicase-DNA-binding'multidomain chromatin protein with
            the following architecture: chromo-bromo-chromo-SNF2
            ATpase' [Cryptosporidium parvum Iowa II]
 gi|46226948|gb|EAK87914.1| chromodomain-helicase-DNA-binding'multidomain chromatin protein with
            the following architecture: chromo-bromo-chromo-SNF2
            ATpase' [Cryptosporidium parvum Iowa II]
          Length = 2270

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDP-CTIQEWNEGKIP--LL 112
            KA    +++   F   L  L++             G     D    I  +N       + 
Sbjct: 1710 KAEGHRVLIFSQFIQTLTLLEELVEHHGWGYERLDGSIRGTDRNAAITRFNAEDSDKFVF 1769

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ F   W+ +   Q   R       + G  R V VY LI 
Sbjct: 1770 LLSTRAGGLGINLT-SADTVIIFDSDWNPQNDVQACAR-----AHRIGQTRDVKVYRLIT 1823

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
              T +  + +R   K  +   + 
Sbjct: 1824 ARTYEAEMFERAGRKLGLNTAVF 1846


>gi|294892047|ref|XP_002773868.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239879072|gb|EER05684.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 459

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 37/212 (17%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
           L  D++  +I++  S++ T K L++ +     +       +     K L  ++E      
Sbjct: 131 LLDDVEEAHIQSNQSSNMTPKELEMKS---LVEMSGKMVFLD----KLLPRLMETQ--QK 181

Query: 71  IIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQEWN-----------EGKI 109
           ++V       L  ++        +   LD      +    I  +N             ++
Sbjct: 182 VLVFSQMTRALDVIEDYLLWKGYKYERLDGNVSGTQRQEAIDRFNDTSSQSSHGASNKEM 241

Query: 110 P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           P +      + G G+NL    N++V +   W+ +   Q   R       + G K+ V VY
Sbjct: 242 PWIFLLSTRAGGVGINLT-AANVVVIYDSDWNPQNDMQAQARC-----HRIGQKKEVKVY 295

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            LI +++ +E +      K  ++  L++ + K
Sbjct: 296 RLITRDSYEERMFDVASKKLGLEQALMSGVTK 327


>gi|242793561|ref|XP_002482189.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718777|gb|EED18197.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 938

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+  C L    ++   +      +  + A      DE +        KIKAL  I+
Sbjct: 710 QVIERQHKCPLCRAELKDTGALVSPATELGEDAG----VDEAETDASAPSSKIKALIQIL 765

Query: 64  EK---ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEW-NEGKI 109
                      +V   + S L  ++              G+   +K    I E+ N+ K 
Sbjct: 766 TAKGQVEQTKTVVFSQWTSFLDIIEPHLTANDICFTRIDGKLSSNKRDQAISEFTNDPKC 825

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A    C  GLNL    N +V    WW      Q I+R+      + G KR   V+ 
Sbjct: 826 TVLLASLNVCSVGLNL-VAANQVVLCDSWWAPAIEDQAIDRV-----YRLGQKRETTVWR 879

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L+ + ++++ VL     K  +    L+
Sbjct: 880 LVMEGSVEDRVLDIQAAKRELSSTALS 906


>gi|241250526|ref|XP_002403274.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
 gi|215496466|gb|EEC06106.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
          Length = 1514

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN---------------AAPIIV 73
            ++  +  N AV     +     +   + AL+ II  +                   ++V
Sbjct: 745 MMELKKCCNHAVLIRPPEQPAVNN---VDALQQIIRGSGKLLLLDKLLCRLKETGHRVLV 801

Query: 74  AYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQEWNEGKIP--LLFAHPASCGH 121
                  L  +      + FP  R             +  +N              + G 
Sbjct: 802 FSQMVRMLDIIADYLQLRRFPFQRLDGSIKGELRRQALDHFNADTSQDFCFLLSTRAGGL 861

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL    + +V F   W+ +   Q   R       + G K  V +Y L+ +N+++E ++
Sbjct: 862 GINL-ATADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKNQVNIYRLVTKNSVEEDII 915

Query: 182 QRLRTKSTIQDLLLNAL 198
           +R + K  +  L++  +
Sbjct: 916 ERAKRKMVLDHLVIQRM 932


>gi|157822125|ref|NP_001100766.1| DNA excision repair protein ERCC-6 [Rattus norvegicus]
 gi|149034143|gb|EDL88913.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 (predicted) [Rattus norvegicus]
          Length = 1325

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAH 115
               +++       L  L+                 T+      I ++NE   I +    
Sbjct: 758 QGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLT 817

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N ++ +   W+     Q  ER       + G K+ V VY L+   T
Sbjct: 818 TRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW-----RIGQKKQVTVYRLLTAGT 871

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 872 IEEKIYHRQIFKQFLTNRVLKDPKQR 897


>gi|147676741|ref|YP_001210956.1| hypothetical protein PTH_0406 [Pelotomaculum thermopropionicum SI]
 gi|146272838|dbj|BAF58587.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 140

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P +     + G GLNL    + ++ + LWW+     Q  +R       + G  R V 
Sbjct: 35  GAAPFMVVSLKAGGTGLNLTAATH-VIHYDLWWNPAVEDQATDR-----TYRIGQTRTVM 88

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+ LI+  T +E +   + +K  +  L + A
Sbjct: 89  VHRLISLGTFEEKINTMMASKRELAGLTVAA 119


>gi|71274979|ref|ZP_00651267.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71898395|ref|ZP_00680568.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
 gi|71164711|gb|EAO14425.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71731918|gb|EAO33976.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
          Length = 104

 Score = 91.9 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 48/62 (77%)

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           DLE +QQ++ERIG TRQ QAG KR VF+++++A  T+DELV+ R  +K  +QDLLL A+K
Sbjct: 29  DLEHYQQIVERIGPTRQAQAGHKRPVFIHHIVAAGTVDELVMARRESKREVQDLLLEAVK 88

Query: 200 KE 201
           + 
Sbjct: 89  RR 90


>gi|22760345|dbj|BAC11160.1| unnamed protein product [Homo sapiens]
          Length = 1106

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDP 98
             K+  L  ++++        +V       L  +++      F   R        L+++ 
Sbjct: 315 SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREK 374

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 375 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 428

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 429 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 460


>gi|254568488|ref|XP_002491354.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|238031151|emb|CAY69074.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|328352132|emb|CCA38531.1| Putative DNA helicase ino80 [Pichia pastoris CBS 7435]
          Length = 1140

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
            D+ ++ ++ ++       IIV   F +    ++    +               ++D    
Sbjct: 969  DKAVEMIQELLRDNPGEKIIVFSQFTTLFDVIEVILKENNIKFIRYDGSMSLSNRDAAIQ 1028

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +   +  ++     +   GL L     +++    +W+     Q ++R       + G 
Sbjct: 1029 EFYESTEKNVMLLSLKAGNVGLTLTCASRVIIM-DPFWNPYVEDQAMDR-----AHRIGQ 1082

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R VFVY ++ +NT+++ +L    TK  I +  L+
Sbjct: 1083 LREVFVYRMLIKNTVEDRILTIQNTKREIVENALD 1117


>gi|71020293|ref|XP_760377.1| hypothetical protein UM04230.1 [Ustilago maydis 521]
 gi|46100046|gb|EAK85279.1| hypothetical protein UM04230.1 [Ustilago maydis 521]
          Length = 2115

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
              +++       +  +Q+                   + +K    +Q +N +  I +L  
Sbjct: 1906 HRVLIFCQLKQMIDIIQRDLFAALMPSVSYMRLDGSVSAEKRHSIVQTFNADPSIDVLLL 1965

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GL L  G + ++F    W+  +  Q ++R       + G K+ V VY LI +N
Sbjct: 1966 TTQVGGLGLTLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRLGQKKVVNVYRLITRN 2019

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++  ++   R K  + + ++N
Sbjct: 2020 TLEAKIMGLQRFKLNVANSVVN 2041


>gi|322489686|emb|CBZ24946.1| putative DNA excision repair protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1280

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
                   +   K+ AL +++++  +    ++V       L  ++                
Sbjct: 875  SNNPVDLLGSGKLNALLMMLKEWKSFGHRVLVFSQTRMMLDIIENMCEQQAYSYIRMDGA 934

Query: 92   RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     +  +NE   I +        G G+NL  G + +V F   W+     Q  ER
Sbjct: 935  TNGHYRQELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNPITDVQARER 993

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 994  AW-----RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1033


>gi|300120100|emb|CBK19654.2| unnamed protein product [Blastocystis hominis]
          Length = 1570

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLL 112
           ++    +++       L  +Q          +    G   +     I+ ++       + 
Sbjct: 401 QSQGHRVLLFSQMTHMLDIIQDYLTLKGYLFERIDGGVKSNDRQAAIERFSAPGSDRFIF 460

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 461 LICTRAGGVGINLT-AADTVIIYDSDWNPQNDIQAQARC-----HRIGQDKAVKVYRLIT 514

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
             T +  + QR   K  +   +LN
Sbjct: 515 NRTYEMEMFQRANLKLGLDKAVLN 538


>gi|297686445|ref|XP_002820759.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein
           ERCC-6-like [Pongo abelii]
          Length = 1493

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 830 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 888 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 946

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 947 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|237756840|ref|ZP_04585323.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691004|gb|EEP60129.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 383

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSD-LARLQ 85
             K  Q+ N           + +H  K + L+ I+++       +++  +F ++ + ++ 
Sbjct: 189 LQKLRQICNFP--------PESIHSPKAERLKEIVKELADQKEKVVIFTNFVNEGVDKII 240

Query: 86  KAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           K                  +  +K+    +   + K  +      + G GL L    + +
Sbjct: 241 KNLKTILQPQQIVSYHGSLKPEEKNLAVKKFVEDEKCLVFVGTINAAGEGLTLT-SSSYV 299

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +FF L W+  +  Q  +R+      + G K  V +Y  I QNT++E +LQ+L  K ++ +
Sbjct: 300 IFFDLHWNPAKMWQAEDRV-----HRIGQKNKVNIYTFITQNTVEEKILQKLEEKRSMIN 354

Query: 193 LLLNALKKET 202
            +++ +  + 
Sbjct: 355 NVIDDVSSDI 364


>gi|255552319|ref|XP_002517204.1| ATP binding protein, putative [Ricinus communis]
 gi|223543839|gb|EEF45367.1| ATP binding protein, putative [Ricinus communis]
          Length = 1079

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 20/157 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQ 102
           K + L+ ++   +A    +++       +  L         +     G T  ++    ++
Sbjct: 634 KFELLDRLLPKLRATGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGTLLK 693

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N    P  +      + G GLNLQ   + ++ F   W+ +  QQ  +R       + G
Sbjct: 694 QFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQAEDR-----AHRIG 747

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 748 QKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 784


>gi|312074579|ref|XP_003140033.1| hypothetical protein LOAG_04448 [Loa loa]
 gi|307764800|gb|EFO24034.1| hypothetical protein LOAG_04448 [Loa loa]
          Length = 1841

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 37/221 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y +  + +   + G      N   +  KC    N +         +E  D +++ L  
Sbjct: 755 KNYKELSKGVKGSINGF----VNLVMELKKC---CNHSSLVRSYDQPEEGADARLQQLLK 807

Query: 61  -----VIIEKA------NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE- 103
                ++++K           +++       L  +Q     + FP  R        +++ 
Sbjct: 808 SSGKLILLDKLLCRLQETGHRVLIFSQMVMMLDIMQEYLQLRRFPSQRLDGSMRSDLRKA 867

Query: 104 ----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +N    P         + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 868 ALDHFNAPNSPDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AH 921

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 922 RIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLIIQRM 962


>gi|259149765|emb|CAY86569.1| Snf2p [Saccharomyces cerevisiae EC1118]
          Length = 1706

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1091 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1150

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1151 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1204

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1205 QKNEVRILRLITTNSVEEVILERAHKKLDIDGKVIQAGK 1243


>gi|146413953|ref|XP_001482947.1| hypothetical protein PGUG_04902 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1034

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 39/230 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + Q   Y  L  ++I+A N                +QL    N    +D           
Sbjct: 363 EMQIRWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 422

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++  +   + +++    +  L  L+              G T  
Sbjct: 423 EHLAYNSGKMIILDKMLKKFREQGSRVLIFSQMSRLLDILEDYCYLRDYEYCRIDGSTAH 482

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I  +N   +   +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 483 EDRIEAIDLYNAPDLDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 539

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                + G K+ V VY  + +N I+E VL+R   K  +  L++   ++ T
Sbjct: 540 ---AHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGRQVT 586


>gi|123474505|ref|XP_001320435.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121903240|gb|EAY08212.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1497

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 65  KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWN-EGKIPLLF 113
           K     +++       L  +         +     G   D D    I  +N + +  +  
Sbjct: 630 KEQGHKVLIFSQMVRVLGIISIFLEANQYKYERLDGSVNDNDRQAAIDRFNQDPEAFVFL 689

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    N ++ +   W+ +   Q   R       + G  + V VY L+ +
Sbjct: 690 LSTKAGGVGINLT-AANTVIIYDSDWNPQNDIQAEARC-----HRIGQTQKVKVYRLVTR 743

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
            T +E + +R   K  +  ++L+ 
Sbjct: 744 ATYEEKMYERASKKLGLDHVVLDG 767


>gi|46136625|ref|XP_390004.1| hypothetical protein FG09828.1 [Gibberella zeae PH-1]
          Length = 882

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 24/164 (14%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFP---------- 89
           DEE    E    K +A+  I++       + ++V   + S L  ++              
Sbjct: 699 DEEDFDAESQSSKTEAMMQILKATMRKEGSKVVVFSQWTSFLNIIEAQLKADGMGYTRID 758

Query: 90  ---QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +    DK    +    + +  ++ A  A C  GLNL    + ++    WW      Q
Sbjct: 759 GSMKADKRDKAIEALDS--DPETRVMLASLAVCSVGLNL-VAADTVILSDSWWAPAIEDQ 815

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            I+R+      + G  R   ++ L+ + +++E VL     K  +
Sbjct: 816 AIDRV-----HRLGQTRETTIFRLVMEGSVEERVLDVQSEKREL 854


>gi|73951143|ref|XP_859285.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 10 [Canis familiaris]
          Length = 1806

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|309357491|emb|CAP35854.2| hypothetical protein CBG_18388 [Caenorhabditis briggsae AF16]
          Length = 995

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN- 105
           K L  I  +     +++   F S L  L+          K       +      I E+N 
Sbjct: 777 KMLPEI--QNKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNL 834

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      + G G+NL    +I++   + ++    +Q  +R       + G ++ V
Sbjct: 835 SKDLFVFLLSTKAGGLGINLTSANHIIIH-DIDFNPYNDKQAEDRC-----HRMGQEKPV 888

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V  L+++ T++  +L   + K  ++  + + +K +
Sbjct: 889 HVTRLVSKCTVEIGMLALAKKKLQLEKQVTDGVKGQ 924


>gi|302419287|ref|XP_003007474.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
 gi|261353125|gb|EEY15553.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
          Length = 1131

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 28/181 (15%)

Query: 45   EKHWKEVHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
             KHW  +   K++A   +I     E    A  ++   +   +  ++ A  +   L     
Sbjct: 948  SKHW--MTSAKVQACVDLIKQIRDESDGRAKTLIFSQWTMFIDLMEIALQKDEELKHVGH 1005

Query: 95   ---DKDPCTIQEW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
               D D      +          +  L+     +   GLNL     +++    +W+    
Sbjct: 1006 VRYDGDMNMKDRFKSAQRFRENPRTKLMLISLKAGNAGLNLVQASRVIIL-DPFWNPFVE 1064

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             Q ++R+      + G +  V VY ++ ++++++ +++    K    +  L+    + + 
Sbjct: 1065 MQAVDRV-----HRIGQQNEVKVYRILVKDSVEDRIMEIQTKKREAIEAALDGKASKGMG 1119

Query: 205  V 205
            +
Sbjct: 1120 L 1120


>gi|9632111|ref|NP_048904.1| hypothetical protein PBCV1_A548L [Paramecium bursaria Chlorella
           virus 1]
 gi|2447053|gb|AAC96911.1| similar to Caenorhabditis transcription activator, corresponds to
           Swiss-Prot Accession Number P41877 [Paramecium bursaria
           Chlorella virus 1]
          Length = 458

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 32/220 (14%)

Query: 8   QRELYCDLQGEN---IEAFNS----------ASKTVKCLQLANGA--VYYDEEKHWKEVH 52
           +++LY +L       + A+N+            + ++  Q       +Y + E    E +
Sbjct: 223 EKDLYAELVENGKILLRAYNAYGDGEGRMRLLEQLMRMRQCVTNPQILYANSEDEKWEGN 282

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQ 102
             K+  L   I+       ++  ++  ++  +++             G+T +      I+
Sbjct: 283 RTKLNMLRKEIQNNPVEKTLIFCNWICEMDAIREMLHSIGHKSVTLNGKTPNSQRDVNIK 342

Query: 103 EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE   I        S G GLNLQ    + +  SL W+     Q I R       + G 
Sbjct: 343 SFNEDNDINFFIIQIESGGIGLNLQVATRVFI-NSLSWNATTEIQAIAR-----AHRIGQ 396

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              V V  LI  NT DE VL   + K  I   + +  + E
Sbjct: 397 TANVIVKRLIIDNTFDEHVLNLQQKKLEIASEIFDDKRIE 436


>gi|194206164|ref|XP_001500332.2| PREDICTED: similar to DNA excision repair protein ERCC-6
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB) [Equus caballus]
          Length = 1461

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 33/215 (15%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y  F   +E+Y  L G+        S  V   ++ N   Y      WK     K+  +
Sbjct: 766 KVYQNFIDSKEVYGILNGD----MQVFSGLVALRKICNHPGY------WKR--SGKMIVV 813

Query: 60  EVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG 107
           E +++        +++       L  L+                 T+      I  +NE 
Sbjct: 814 ESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTVASRQPLITRYNED 873

Query: 108 -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +        G G+NL  G N ++ +   W+     Q  ER       + G K+ V 
Sbjct: 874 TSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTDTQARERAW-----RIGQKKQVT 927

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 928 VYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 962


>gi|194038394|ref|XP_001926393.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2 [Sus scrofa]
          Length = 1828

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|196000388|ref|XP_002110062.1| hypothetical protein TRIADDRAFT_53632 [Trichoplax adhaerens]
 gi|190588186|gb|EDV28228.1| hypothetical protein TRIADDRAFT_53632 [Trichoplax adhaerens]
          Length = 1207

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
            + HW  +   K+ AL+ ++   + N   +++          L+K               
Sbjct: 732 SDGHW--LLSGKMIALKTLLSLWRENKHRVLLFTQTRQMANILEKFVKSENYPYMRMDGT 789

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +      ++ +N    I +        G GLNL  G + +V F   W+     Q  ER
Sbjct: 790 TNISSRQSLVKLFNRNNAIFIFILTTRVGGLGLNLT-GADRVVIFDPDWNPSTDMQARER 848

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V +Y  +   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 AW-----RVGQTKEVTIYRFLTSGTIEEKIYHRQVFKEFLTNRILKNPKQR 894


>gi|149691012|ref|XP_001488063.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Equus caballus]
          Length = 1828

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|73951141|ref|XP_859244.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 9 [Canis familiaris]
          Length = 1807

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|73951125|ref|XP_849509.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 2 [Canis familiaris]
 gi|73951131|ref|XP_536179.2| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 1 [Canis familiaris]
          Length = 1827

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|58262478|ref|XP_568649.1| DNA dependent ATPase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230823|gb|AAW47132.1| DNA dependent ATPase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1036

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 96  KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  +   E    ++     + G GLNL    N +V F   W+  +  Q ++R   
Sbjct: 686 ERQEMIDRFQDLERDHFIMLISTRAGGVGLNLT-AANKVVIFDPSWNPADDLQAMDR--- 741

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 742 --AFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 780


>gi|73951149|ref|XP_859392.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 13 [Canis familiaris]
          Length = 1814

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|73951129|ref|XP_859020.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 4 [Canis familiaris]
          Length = 1714

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 676 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 735

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 736 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 789

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 790 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 830


>gi|67474889|ref|XP_653178.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
            HM-1:IMSS]
 gi|56470108|gb|EAL47792.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
            histolytica HM-1:IMSS]
          Length = 1641

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC- 99
               K+  L+ ++ K N     +++       L  L+K             G     D   
Sbjct: 964  SSGKMVLLDKLLPKLNADGHKVLIFSQLKGVLDILEKYLSYKKYTYERLDGSVRSNDRQN 1023

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             I  + +G+  +      + G G+NL    + ++ +   W+ +   Q   R       + 
Sbjct: 1024 AIDRFMKGERFVFLLCTRAGGIGINLSE-ADTVIIYDSDWNPQNDLQAQARC-----HRI 1077

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+ V VY L+++NT +  + +R   K  +   +L+
Sbjct: 1078 GQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAILS 1114


>gi|322701089|gb|EFY92840.1| chromo domain-containing protein 1 [Metarhizium acridum CQMa 102]
          Length = 1663

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QG 91
           G+V  +++         K+  L+ ++ K   +   +++       L  L         + 
Sbjct: 774 GSVRREDQIKGLITSSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKF 833

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD           I  +N              + G G+NL    + ++ F   W+ + 
Sbjct: 834 QRLDGTIAAGPRRMAINHFNADDSEDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA 892

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 893 DLQAMAR-----AHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 941


>gi|295674669|ref|XP_002797880.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb01]
 gi|226280530|gb|EEH36096.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb01]
          Length = 1332

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
           K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 691 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 750

Query: 54  -----EKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +              L  ++     G T   D
Sbjct: 751 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 810

Query: 98  PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + +E+N    +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 811 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 864

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 865 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 909


>gi|291233864|ref|XP_002736872.1| PREDICTED: excision repair cross-complementing rodent repair
            deficiency, complementation group 6-like [Saccoglossus
            kowalevskii]
          Length = 1503

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
              K+  +E +++  K     +++       L  L                   +      
Sbjct: 865  SGKLIVIESLLKLWKKQGHRVLLFTQSKQMLDILDSFVTSRGYNYMRMDGSTPISSRQPA 924

Query: 101  IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +N+ K + +        G G+NL  G + +V +   W+     Q  ER       + 
Sbjct: 925  VNRFNQDKSVFVFLLTTRVGGLGVNL-IGADRVVIYDPDWNPSTDMQARERAW-----RI 978

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 979  GQNKQVTIYRLLTSGTIEEKIYHRQIFKQFLTNRVLKDPKQR 1020


>gi|303278366|ref|XP_003058476.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459636|gb|EEH56931.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1251

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 34/175 (19%)

Query: 56   IKALEVIIEKANAA--PIIVAYHFNSDLA----RLQK-AFPQGRTLDKDPCTIQEWN--- 105
            ++AL  +   A+      IV   + S +     RL+K  F   + L   P T +  N   
Sbjct: 1059 LRALREMRSGADGHLNKAIVFSQYTSMIDIAEWRLKKEKFVVAKLLGSMPVTQRAANLKA 1118

Query: 106  ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER------------ 150
               +  + ++     S G GLNLQ   N +     WW+     Q  +             
Sbjct: 1119 FRDDPNVSVILMSLKSGGEGLNLQ-AANYVFVLEPWWNPAVEMQARDAPAGPRGFILYFT 1177

Query: 151  --------IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                      V R  + G +RAV       +NTI+E ++Q    K  + +  ++ 
Sbjct: 1178 HPSVSTFDRAVMRAHRIGQRRAVTAVRFSTKNTIEERMMQLQEKKRLVFEGCMDG 1232


>gi|242002592|ref|XP_002435939.1| DNA excision repair protein ERCC-6, putative [Ixodes scapularis]
 gi|215499275|gb|EEC08769.1| DNA excision repair protein ERCC-6, putative [Ixodes scapularis]
          Length = 982

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCT 100
             K+  +E +++  K     +++       L  L+K                 +      
Sbjct: 327 SGKMAVVESLLKLWKRQGHRVLLFTQSRQMLLILEKFVQDQGYKYMVMTGSTPIASRQPA 386

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++N    + +        G G+NL  G + +V +   W+     Q  ER       + 
Sbjct: 387 INKFNADTSVFVFLLTTRVGGLGVNLT-GADRVVIYDPDWNPSTDTQARERAW-----RI 440

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  R V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 441 GQLRDVTIYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 482


>gi|190348362|gb|EDK40804.2| hypothetical protein PGUG_04902 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1034

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 39/230 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + Q   Y  L  ++I+A N                +QL    N    +D           
Sbjct: 363 EMQIRWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 422

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++  +   + +++    +  L  L+              G T  
Sbjct: 423 EHLAYNSGKMIILDKMLKKFREQGSRVLIFSQMSRLLDILEDYCYLRDYEYCRIDGSTAH 482

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I  +N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 483 EDRIEAIDSYNAPDSDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 539

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                + G K+ V VY  + +N I+E VL+R   K  +  L++   ++ T
Sbjct: 540 ---AHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGRQVT 586


>gi|114658991|ref|XP_001170635.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 2
           [Pan troglodytes]
 gi|114658993|ref|XP_001170689.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 5
           [Pan troglodytes]
          Length = 1730

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 691 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 750

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 751 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 804

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 805 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 845


>gi|46125779|ref|XP_387443.1| hypothetical protein FG07267.1 [Gibberella zeae PH-1]
          Length = 1895

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 18/154 (11%)

Query: 55   KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPCTIQ 102
            K + L  ++ +A      ++V       L  L+     QGRT+ +             ++
Sbjct: 1287 KTELLTTVLNEAREVNDKVLVFSQSLITLDYLEDMCKNQGRTVSRMDGKTPVAVRQQQVK 1346

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N+G   +     A+ G GLN+ +G N +V F +  +    QQ + R       + G +
Sbjct: 1347 DFNQGSKEVFLISTAAGGVGLNI-HGANRVVIFDIRHNPSHEQQAVGR-----AYRIGQQ 1400

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + VFVY  +   T ++ +  R   K  +   +++
Sbjct: 1401 KKVFVYRFMVAGTFEDNLNNRQVFKMQLASRVVD 1434


>gi|42567315|ref|NP_194918.2| chromatin remodeling factor, putative [Arabidopsis thaliana]
          Length = 1202

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 30/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEKA--NAAPIIVAYH 76
            +K  Q+ +      + +   E  +E          K++ L+ ++ K       +++   
Sbjct: 489 LMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQ 548

Query: 77  FNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLN 124
           F   L  L+  F           G+    +    I  +N              + G G+N
Sbjct: 549 FQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGIN 608

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+     Q + R+      + G    V +Y LI + T++E +++  
Sbjct: 609 L-ATADTVIIYDSDWNPHADLQAMARV-----HRLGQTNKVMIYRLIHKGTVEERMMEIT 662

Query: 185 RTKSTIQDLLL 195
           + K  ++ L++
Sbjct: 663 KNKMLLEHLVV 673


>gi|114658975|ref|XP_001170775.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 9
           [Pan troglodytes]
          Length = 1834

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 795 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 854

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 855 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 908

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 909 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 949


>gi|189458810|ref|NP_001074814.2| chromodomain helicase DNA binding protein 2 [Mus musculus]
          Length = 1827

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|73951153|ref|XP_859466.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 15 [Canis familiaris]
          Length = 1812

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|320164135|gb|EFW41034.1| smarca2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1466

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 23/177 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR---------LQ 85
             GA+              K +  + ++ K +     +++       L           + 
Sbjct: 893  GGAIIT---GSLVVRASGKFEMFDRLLTKLHRTGHRVLLFSQMTQCLTILEDYCNYNNIL 949

Query: 86   KAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G T  D+    + ++N    P  L      + G GLNLQ   + +V F   W+  
Sbjct: 950  YLRLDGNTKPDERAELLTKFNAPNSPYNLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPH 1008

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +  Q        R  + G K  V V   +  ++++E +L   + K  +   ++ A K
Sbjct: 1009 QDLQA-----QDRAHRIGQKNEVRVIRFVTADSVEERMLAAAQFKLDMDKKVIQAGK 1060


>gi|118421089|ref|NP_001262.3| chromodomain-helicase-DNA-binding protein 2 isoform 1 [Homo
           sapiens]
 gi|119370320|sp|O14647|CHD2_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 2;
           Short=CHD-2; AltName: Full=ATP-dependent helicase CHD2
 gi|225000176|gb|AAI72425.1| Chromodomain helicase DNA binding protein 2 [synthetic construct]
          Length = 1828

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|114658977|ref|XP_001170676.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 4
           [Pan troglodytes]
 gi|114658979|ref|XP_001170719.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 6
           [Pan troglodytes]
 gi|114658981|ref|XP_001170756.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 8
           [Pan troglodytes]
          Length = 1828

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|322706938|gb|EFY98517.1| chromo domain-containing protein 1 [Metarhizium anisopliae ARSEF
           23]
          Length = 1668

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QG 91
           G+V  +++         K+  L+ ++ K   +   +++       L  L         + 
Sbjct: 762 GSVRREDQIKGLITSSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKF 821

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD           I  +N              + G G+NL    + ++ F   W+ + 
Sbjct: 822 QRLDGTIAAGPRRMAINHFNADDSEDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA 880

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 881 DLQAMAR-----AHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 929


>gi|119613505|gb|EAW93099.1| hCG32740, isoform CRA_e [Homo sapiens]
          Length = 1356

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 830 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 888 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 946

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 947 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|114635114|ref|XP_507781.2| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Pan troglodytes]
          Length = 1491

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 828 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 885

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 886 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 944

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 945 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|4557565|ref|NP_000115.1| DNA excision repair protein ERCC-6 [Homo sapiens]
 gi|416959|sp|Q03468|ERCC6_HUMAN RecName: Full=DNA excision repair protein ERCC-6; AltName:
           Full=ATP-dependent helicase ERCC6; AltName:
           Full=Cockayne syndrome protein CSB
 gi|182181|gb|AAA52397.1| excision repair protein [Homo sapiens]
 gi|27501924|gb|AAO13487.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
 gi|55661841|emb|CAH70291.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
 gi|119613500|gb|EAW93094.1| hCG32740, isoform CRA_a [Homo sapiens]
 gi|119613503|gb|EAW93097.1| hCG32740, isoform CRA_a [Homo sapiens]
          Length = 1493

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 830 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N +V +   W+     Q  E
Sbjct: 888 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARE 946

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 947 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|311271511|ref|XP_003133156.1| PREDICTED: DNA excision repair protein ERCC-6-like [Sus scrofa]
          Length = 1481

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 819 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDG 876

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N ++ +   W+     Q  E
Sbjct: 877 TTTIASRQPLITRYNEDASIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARE 935

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 936 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 982


>gi|240274068|gb|EER37586.1| RSC complex subunit [Ajellomyces capsulatus H143]
          Length = 518

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
           K + L+ I+   +A+   +++ +              L  ++     G T   D   + +
Sbjct: 38  KFELLDRILPKFQASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 97

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N              + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 98  EFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIG 151

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 152 QKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 190


>gi|316975430|gb|EFV58874.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1023

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFN---------SDLARLQKAFPQGRT-LDKDPC 99
               K+ AL+ I+ +A      +++   F           +L +++     G+T + +   
Sbjct: 851  DSGKLIALDGILAEAKQQGNKVLLFSQFVIVLDVLEEFLNLKQIRYLRLDGQTPVVERQQ 910

Query: 100  TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +N    I +      + G G+NL    N++V + + ++        +R    R  +
Sbjct: 911  LIDMFNSSEDIFIFLLSTRAGGLGINLT-SANVIVLYDIDYNPH-----NDRQAEDRCHR 964

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G K+ V V  LI+++T+DE +L     K  ++  +  A
Sbjct: 965  VGQKKDVHVIKLISKDTVDESMLACANKKLELERQITTA 1003


>gi|289615410|emb|CBI57811.1| unnamed protein product [Sordaria macrospora]
          Length = 1126

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 420 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 479

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++++     + +++    +  L  L+               G 
Sbjct: 480 EHLV--YNAGKMLVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGGT 537

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 538 AHEDRIAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR 596

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 597 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 637


>gi|115384896|ref|XP_001208995.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196687|gb|EAU38387.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1110

 Score = 91.5 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + +   K+  L  ++ +  AN    ++   F   +  L++             GRT 
Sbjct: 926  KNDEWMDSGKVNKLCELLRRFTANGDRCLIFSQFTLVMDILEQVLENQHLGFVRLDGRTN 985

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 986  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1039

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1040 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1081


>gi|312901374|ref|ZP_07760654.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|311291537|gb|EFQ70093.1| protein, SNF2 family [Enterococcus faecalis TX0470]
          Length = 404

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 30/198 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y    ++    L  E  +  +         +LA+G  YY  +K       +K+   ++
Sbjct: 217 KEYMTVAKDRV--LSDEEYDTPS---------KLAHGLRYYANQK-------DKLDYAQM 258

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNEGKIPLLFAHP 116
           + E    + II+ Y++  ++  L++        + +         Q W   K  + F   
Sbjct: 259 LCEGTE-SNIIIFYYYQKEIEALKEKIKNKTFFEVNGKHSNLPPKQSWKSLKNSVTFVQY 317

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   G+ LQY  N ++F++  +  +++ Q + R       + G  + V VY  I Q TI
Sbjct: 318 MAGSAGIELQY-ANTVIFYTPTYSYQDYSQALGR-----AYRNGQTKKVTVYRFITQQTI 371

Query: 177 DELVLQRLRTKSTIQDLL 194
           ++ V Q L  K    + L
Sbjct: 372 EQAVYQALENKEDFSEEL 389


>gi|119492467|ref|XP_001263599.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119411759|gb|EAW21702.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1133

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K+  L  +++  + N    +V   F   +  L+              GRT 
Sbjct: 942  KNDEWMNSGKVDKLCELLKRFQENGDRTLVFSQFTLVMDILEHVLETLHLGFVRLDGRTN 1001

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 1002 VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 1055

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1056 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1097


>gi|326431585|gb|EGD77155.1| CHD1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1497

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 22/171 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------- 88
           Y  +E  W+     K++ L  ++ K  A+   +++       L  L+  F          
Sbjct: 785 YVHDEDLWR--ASGKLELLTRMLPKFKASKHKVLLFSQMTQLLTILEDFFTAIGLTYIRL 842

Query: 89  PQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G + ++    ++E+N     I +      + G GLNLQ   + ++ F   W+  +  Q
Sbjct: 843 DGGTSDEERGRQVKEFNSPDSQIDVFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQ 901

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   R  + G K  V V+ L + N+++E +L+  R K  + + ++ A
Sbjct: 902 A-----QDRAHRIGQKNEVRVFRLCSINSVEETILEAARFKLNVDEKVIQA 947


>gi|157819999|ref|NP_001100993.1| chromodomain-helicase-DNA-binding protein 2 [Rattus norvegicus]
 gi|149057183|gb|EDM08506.1| chromodomain helicase DNA binding protein 2 (predicted) [Rattus
           norvegicus]
          Length = 1834

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 796 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 855

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 856 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 909

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 910 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|148682181|gb|EDL14128.1| mCG2900 [Mus musculus]
          Length = 1217

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEW---- 104
             K+  L  ++E+        +V       L  +++       +TL  D      W    
Sbjct: 439 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREK 498

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                    +  +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 499 RIQLFQQNKEYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 552

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 553 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 584


>gi|149236886|ref|XP_001524320.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146451855|gb|EDK46111.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1082

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 34   QLANGAVYYDEEKHWKEV-HDEKIKALEVIIE---KANAA-PIIVAYHFN---------- 78
            Q++N ++  +  K  +      KI+    +I    +AN +  II+   F           
Sbjct: 885  QISNISIIKELTKRDQGFEASAKIEKAIELINNIQQANPSEKIIIFSQFTTLFDLMKLVL 944

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              L  L   +    T++     I+++ +    +L     +   GL L    ++++    +
Sbjct: 945  DHLKILHLRYDGSMTVEAKNNVIKQFYQSNCNVLLLSLRAGNVGLTLTCANHVIIM-DPF 1003

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            W+    +Q ++R       + G ++ V V+ ++  NT++  +++    K  +
Sbjct: 1004 WNPFVEEQAMDR-----AHRIGQEKEVHVHRVLITNTVESRIMELQERKKEL 1050


>gi|118393979|ref|XP_001029383.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89283583|gb|EAR81720.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1811

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            K+  +  +++K       +++    +  L   +                  ++     ++
Sbjct: 1294 KLNTMIQLLKKLKQRGDKVLIFTQMSRMLDIFENVLNLFNFTYVRLDGSTKIENRQKVVE 1353

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N + +I    +   S G GLNL  G N++VF+   W+       ++R    R  + G 
Sbjct: 1354 RFNGDSRIFCFISSTRSGGIGLNLT-GANVVVFYDTDWN-----PAMDRQAQDRCHRIGQ 1407

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V +Y LI++ TI+E +L +   K  + + ++ 
Sbjct: 1408 TRNVSIYRLISEYTIEENILLKSIQKRKLDEYIME 1442


>gi|168027824|ref|XP_001766429.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162682338|gb|EDQ68757.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1343

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 53/213 (24%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPII 72
           L GE+I+A  + ++++       G V    E         KI  L  ++E         +
Sbjct: 647 LDGEDIQAAEAMTRSLA------GMV----EDDRVHGASCKIDFLMALLENLVTEGHRTL 696

Query: 73  VAYHFNSDLARLQKAFPQG----RTLDKDPCTIQE------------------------- 103
           +       L  +Q          R +D                                 
Sbjct: 697 IFAQTRKMLDIIQDEILDRGWIFRRIDGTIKAADREQCVQASGVHGAEIEARCELIVRPR 756

Query: 104 ---WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              W    +  IPL        G GL L  G N +V     W+     Q ++R       
Sbjct: 757 VAVWEFQSDNDIPLFLLTSQVGGLGLTLT-GANRVVIVDPAWNPSTDNQSVDR-----AY 810

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G K+ V VY L+   TI+E + ++   K  +
Sbjct: 811 RIGQKKNVVVYRLMTCGTIEEKIYRKQVFKGHL 843


>gi|302673648|ref|XP_003026510.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
 gi|300100193|gb|EFI91607.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
          Length = 1361

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 81/226 (35%), Gaps = 34/226 (15%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVH----- 52
           + Y + ++ ++  + +G+          + + +QL         +DE +           
Sbjct: 739 QLYKQMKKYKMIANGKGKGQSTGGVKGLSNELMQLRKICQHPFLFDEVEDVVNTTQLIDE 798

Query: 53  -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
                  K++ L  I+ K  A    +++ +     +  ++               G   +
Sbjct: 799 KIIRSSGKVELLSRILPKLFATDHRVLIFFQMTKVMDIMEDFLKMMGWKYLRLDGGTKTE 858

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +Q +N     I +      + G GLNLQ   + ++ F   W+     Q       
Sbjct: 859 ERASYVQLFNAKDSDIRVFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHADLQA-----Q 912

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  +AV +   I + +++E + QR R K  I   ++ A +
Sbjct: 913 DRAHRIGQTKAVLILRFITEKSVEEAMYQRARYKLDIDGKVIQAGR 958


>gi|148886758|ref|NP_001092144.1| similar to SNF2/RAD54 family protein [Rattus norvegicus]
 gi|62667178|ref|XP_228546.3| PREDICTED: excision repair cross-complementing rodent repair
           deficiency complementation group 6 - like [Rattus
           norvegicus]
 gi|109512082|ref|XP_001070442.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency complementation group 6 - like [Rattus
           norvegicus]
 gi|149042163|gb|EDL95870.1| similar to SNF2/RAD54 family protein (predicted) [Rattus
           norvegicus]
          Length = 1230

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEW---- 104
             K+  L  ++E+        +V       L  +++       +TL  D      W    
Sbjct: 461 SGKMIFLMALLERLQDEGHQTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREK 520

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                    +  +        G GL L    + +V F   W+     Q ++R+      +
Sbjct: 521 RIQLFQQNKEYSVFLLTTQVGGVGLTLT-AASRVVIFDPSWNPATDAQAVDRV-----YR 574

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 575 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 606


>gi|58267202|ref|XP_570757.1| DNA repair protein rad16 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57226991|gb|AAW43450.1| DNA repair protein rad16, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1045

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 52   HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
               K++AL   +EK          +V   F S L  +     +            T  + 
Sbjct: 871  SSSKLEALVEELEKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQR 930

Query: 98   PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              TIQ +  N G + +      + G  LNL    +++     WW+     Q ++RI    
Sbjct: 931  DATIQHFMKNTG-VTVFLISLKAGGVALNLTE-ASMVFMMDSWWNPSVEYQAMDRI---- 984

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G KR V V  L+ +++I++ ++Q    K  + +  L++
Sbjct: 985  -HRLGQKRPVKVVKLVIEDSIEDQIVQLQAKKLAMTEAALSS 1025


>gi|134111577|ref|XP_775325.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257984|gb|EAL20678.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1045

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 52   HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
               K++AL   +EK          +V   F S L  +     +            T  + 
Sbjct: 871  SSSKLEALVEELEKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQR 930

Query: 98   PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              TIQ +  N G + +      + G  LNL    +++     WW+     Q ++RI    
Sbjct: 931  DATIQHFMKNTG-VTVFLISLKAGGVALNLTE-ASMVFMMDSWWNPSVEYQAMDRI---- 984

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G KR V V  L+ +++I++ ++Q    K  + +  L++
Sbjct: 985  -HRLGQKRPVKVVKLVIEDSIEDQIVQLQAKKLAMTEAALSS 1025


>gi|325191520|emb|CCA25894.1| PREDICTED: similar to SNF2 domaincontaining protein [Albugo
           laibachii Nc14]
          Length = 966

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
              KI+AL   ++           IV   F + L  +Q     G            +D  
Sbjct: 793 TSTKIEALFQELDMMKTRDPSGKAIVFSQFVNMLDLIQFRLKLGGIPCVTLSGNMSMDAR 852

Query: 98  PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +     +  L     + G  LNL    +I +    WW+     Q I+R      
Sbjct: 853 DRILESFRSDVNVTTLLISLKAGGVALNLTIASHIFLM-DPWWNPAAESQAIDR-----T 906

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + +   + I   +I++ +LQ    K  I D  +  
Sbjct: 907 HRLGQFKPIQATHFIIAGSIEDRILQLQDKKRLIFDATVGG 947


>gi|297297256|ref|XP_002808499.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Macaca mulatta]
          Length = 1806

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 767 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 826

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 827 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 880

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 881 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 921


>gi|221125834|ref|XP_002164775.1| PREDICTED: similar to TBP-associated factor 170, partial [Hydra
           magnipapillata]
          Length = 460

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 69  APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWNE-GKIPLLFA 114
              ++ +   S L  ++                      ++    +Q +N    I +L  
Sbjct: 253 HRALIFFQLKSMLNIVENDLFKQHLPSITYLRLDGSVPANQRHNIVQMFNNDPSIDVLLL 312

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LIA++
Sbjct: 313 TTHVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLIARS 366

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T++E ++   + K  I + ++
Sbjct: 367 TLEEKIMGLQKFKLNIANTVI 387


>gi|26324980|dbj|BAC26244.1| unnamed protein product [Mus musculus]
          Length = 1240

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEW---- 104
             K+  L  ++E+        +V       L  +++       +TL  D      W    
Sbjct: 462 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREK 521

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                    +  +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 522 RIQLFQQNKEYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 575

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 576 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 607


>gi|219128189|ref|XP_002184301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404102|gb|EEC44050.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 975

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 20/156 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEG 107
           L+ I E A    I+V  ++ S L  ++      R L            +    ++ +N  
Sbjct: 688 LQSIRENAPNDKIVVVSNYTSALTIVESLILGPRKLGFLRLDGGTESSQRQPLVESFNRS 747

Query: 108 ---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K+  L     + G GLNL  G N L+     W+     Q + R+      + G  + 
Sbjct: 748 HPEKVFCLLLSSKAGGCGLNL-VGANRLLLLDPDWNPASDVQAMGRV-----YRQGQTKP 801

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++Y L    T++E++LQR   K  +    ++  K 
Sbjct: 802 CWIYRLFTTGTVEEVILQRQLQKGNLTAWTVDGGKS 837


>gi|148706991|gb|EDL38938.1| chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  ++  KC    +    +D       E         
Sbjct: 289 MKDLDAFENET-----AKKVKLQNILTQLRKC---VDHPYLFDGVEPEPFEVGEHLIEAS 340

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 341 GKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 400

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +    I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 401 KNFGNQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 454

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 455 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|149240541|ref|XP_001526146.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450269|gb|EDK44525.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 1088

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--EEKHWKEVH 52
             Q E Y  L  ++I+A N                +QL    N    +D  E        
Sbjct: 406 DMQLEWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 465

Query: 53  DEKIK------ALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
           +  I        L+ +++  +   + +++    +  L  L+              G T  
Sbjct: 466 EHLIDNSGKMIILDKMLKKFQKEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 525

Query: 96  KDP-CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 526 EDRIEAIDEYNAPDSAKFVFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 582

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY  + +N I+E VL+R   K  +  L++ 
Sbjct: 583 ---AHRIGQKKQVKVYRFVTENAIEEKVLERAAQKLRLDQLVIQ 623


>gi|27414501|ref|NP_666347.2| DNA excision repair protein ERCC-6-like [Mus musculus]
 gi|81873794|sp|Q8BHK9|ERC6L_MOUSE RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|22902399|gb|AAH37660.1| Excision repair cross-complementing rodent repair deficiency
           complementation group 6 - like [Mus musculus]
 gi|27368137|gb|AAN87172.1| excision repair cross-complementing rodent repair deficiency
           complementation group 6 C-like [Mus musculus]
 gi|123229764|emb|CAM24634.1| excision repair cross-complementing rodent repair deficiency
           complementation group 6-like [Mus musculus]
          Length = 1240

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEW---- 104
             K+  L  ++E+        +V       L  +++       +TL  D      W    
Sbjct: 462 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREK 521

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                    +  +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 522 RIQLFQQNKEYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 575

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 576 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 607


>gi|291001481|ref|XP_002683307.1| chromodomain helicase DNA binding protein [Naegleria gruberi]
 gi|284096936|gb|EFC50563.1| chromodomain helicase DNA binding protein [Naegleria gruberi]
          Length = 1800

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDK-----DPCTIQEWNEGKIP--LL 112
           +     +++       L  L+     + F   R             I  +N+  I   + 
Sbjct: 690 REGGHKVLIFSQMVLVLNILEDYMRYRNFTYVRLDGTIKGSIRQQAIDRFNDPNIDTFVF 749

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+ +   Q   R       + G  + V +Y L+ 
Sbjct: 750 LVSTKAGGVGINLT-SADTVIIYDSDWNPQNDLQAQARC-----HRIGQTKEVKIYRLLT 803

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           +NT ++ + +R   K  +   +L++
Sbjct: 804 KNTKEKEIFERASMKLGLDRAVLSS 828


>gi|254572850|ref|XP_002493534.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
 gi|238033333|emb|CAY71355.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
          Length = 983

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-C 99
           +  K+  L+ +++K     + +++    +  L  L+              G T  +D   
Sbjct: 400 NSAKMIVLDKLLKKMKEQGSRVLIFSQMSRLLDILEDYCFFREYEYCRIDGSTAHEDRIN 459

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R       
Sbjct: 460 AIDEYNKPDSKKFIFLLTTRAGGLGINLT-SADIVVLYDSDWNPQADLQAMDR-----AH 513

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 514 RIGQKKQVQVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 556


>gi|50306047|ref|XP_452985.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642118|emb|CAH01836.1| KLLA0C17578p [Kluyveromyces lactis]
          Length = 1525

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
              K+  L+ ++ +   +   +++       L  L           +         +   
Sbjct: 705 SSGKMVLLDKLLTRLKKDGHRVLIFSQMVRILDILGDYLSIKGINFQRLDGTVPSAQRRI 764

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N       +      + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 765 SIDHFNAEDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQADLQAMAR-----AH 818

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 819 RIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 857


>gi|83764679|dbj|BAE54823.1| unnamed protein product [Aspergillus oryzae]
          Length = 1894

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            L  GA Y    +        ++K +  I++      ++ +  +                 
Sbjct: 1665 LGTGASYVSPHRALIF---CQMKEMLDIVQSEVLKKLLPSVQYL--------RLDGSVEA 1713

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    +  +N +     L    +  G GLNL  G + ++F    W+ ++  Q ++R   
Sbjct: 1714 TKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR--- 1769

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1770 --AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1810


>gi|291244998|ref|XP_002742381.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1-like [Saccoglossus kowalevskii]
          Length = 1082

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            ++  K   L+ ++ +       +++   F   L  +         +     G+T + +  
Sbjct: 909  LNSGKFYKLDSLLPEMKQRGDRVLLFSQFTMMLDIIEVYMQYHKHKYLRLDGQTPVQERL 968

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I ++N    I +      + G G+NL    N+++   + ++    +Q  +R       
Sbjct: 969  QLIDKYNNDNGIFVFLLSTKAGGLGINLT-SANVVIIHDIDFNPYNDKQAEDRC-----H 1022

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  R V V  LI +NTI+E +L+    K  ++  +
Sbjct: 1023 RVGQTRDVTVIRLICENTIEEAMLKCAMGKLKLEADI 1059


>gi|323303978|gb|EGA57758.1| Rad5p [Saccharomyces cerevisiae FostersB]
          Length = 1169

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------------- 86
            Y    K  K     K   L+++ + +    +++   F++ L  L+K              
Sbjct: 987  YSPASKSSKITALXKE--LQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIY 1044

Query: 87   AFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             F    +L +    + ++         +L     + G GLNL    +  +    WW    
Sbjct: 1045 KFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSM 1103

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              Q I+R+      + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1104 EDQAIDRL-----HRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|225559059|gb|EEH07342.1| SHREC complex subunit Mit1 [Ajellomyces capsulatus G186AR]
          Length = 1530

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 984  ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQK 1043

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + +V     ++  +  Q + R       
Sbjct: 1044 QIDEFNVPGSPYFAFLLSTRSGGVGINL-ATADTVVIMDPDFNPHQDIQALSR-----AH 1097

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+ 
Sbjct: 1098 RIGQRKKVLVFQLVTKGSAEEKIMQMGKKKMALDQVLIE 1136


>gi|317138849|ref|XP_001816825.2| TBP associated factor (Mot1) [Aspergillus oryzae RIB40]
          Length = 1900

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            L  GA Y    +        ++K +  I++      ++ +  +                 
Sbjct: 1671 LGTGASYVSPHRALIF---CQMKEMLDIVQSEVLKKLLPSVQYL--------RLDGSVEA 1719

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    +  +N +     L    +  G GLNL  G + ++F    W+ ++  Q ++R   
Sbjct: 1720 TKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDIQAMDR--- 1775

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1776 --AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1816


>gi|254569936|ref|XP_002492078.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|238031875|emb|CAY69798.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|328351432|emb|CCA37831.1| ATP-dependent helicase STH1/SNF2 [Pichia pastoris CBS 7435]
          Length = 1239

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 36/228 (15%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQL---ANGAVYYDEEKHWKE----- 50
             Y +  +     +   +   +          K +QL    N    +DE ++  +     
Sbjct: 718 ALYQQMLKHNALFIGASSGPGVSKSGIKGLNNKIMQLRKICNHPFVFDEVENVVDPTRST 777

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL 94
                    K + L+ ++ K  A    +++ +     +           ++     G T 
Sbjct: 778 ADLIWRTSAKFELLDRVLPKFCATGHRVLIFFQMTQVMDIMEDYLRYREMKYLRLDGSTN 837

Query: 95  DKDPCT-IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D    ++ +N              + G GLNLQ   + ++ F   W+  +  Q     
Sbjct: 838 ADDRQDMLKAFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA---- 892

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 893 -QDRAHRIGQKNEVRILRLITTDSVEEVILERAHQKLDIDGKVIQAGK 939


>gi|328354642|emb|CCA41039.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Pichia pastoris CBS
           7435]
          Length = 1012

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-C 99
           +  K+  L+ +++K     + +++    +  L  L+              G T  +D   
Sbjct: 429 NSAKMIVLDKLLKKMKEQGSRVLIFSQMSRLLDILEDYCFFREYEYCRIDGSTAHEDRIN 488

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R       
Sbjct: 489 AIDEYNKPDSKKFIFLLTTRAGGLGINLT-SADIVVLYDSDWNPQADLQAMDR-----AH 542

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 543 RIGQKKQVQVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 585


>gi|302842935|ref|XP_002953010.1| hypothetical protein VOLCADRAFT_30242 [Volvox carteri f.
           nagariensis]
 gi|300261721|gb|EFJ45932.1| hypothetical protein VOLCADRAFT_30242 [Volvox carteri f.
           nagariensis]
          Length = 791

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------K 96
             H  K++ ++ +  +       +I+   F   L  L++ +  GR L            +
Sbjct: 603 VTHSGKLQLVDKMAMRLRDAGHRLIIFSQFTRTLDLLEE-WLVGRGLGYMRIDGTVAGSE 661

Query: 97  DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+             + G G+NL    + ++ F   W+     Q   R    
Sbjct: 662 RQKRIDRFNQHPDSYFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDLQAQAR---- 716

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G  + V +Y L+ + TI+E ++Q  R K  ++ L++
Sbjct: 717 -AHRLGQDKPVMIYRLVTRQTIEERMMQVSRKKMMLEHLVV 756


>gi|213410130|ref|XP_002175835.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
 gi|212003882|gb|EEB09542.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
          Length = 1162

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 33/226 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIK 57
           +K Y + ++     +Q                +QL    N    ++E +   +       
Sbjct: 583 LKLYTQMKKHGMLFVQNGTNGKTGIKGLQNTVMQLKKICNHPFVFEEVEKVVDPSGMSFD 642

Query: 58  ALE------VIIEKA------NAAPIIVAYHFNSDLARL---------QKAFPQGRTL-D 95
            L        ++++       +   +++ +     +  +         +     G T  D
Sbjct: 643 MLWRVAGKFELLDRILPKLFKSGHRVLMFFQMTQIMNIMEDYLHYRAWKYLRLDGSTKSD 702

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N+      +      + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 703 DRSQLLHLFNDPASIYTIFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----Q 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V ++ LI + +++E +L R + K  I   ++ A K
Sbjct: 757 DRAHRIGQTKEVRIFRLITEKSVEENILARAQYKLDIDGKVIQAGK 802


>gi|320162753|gb|EFW39652.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1169

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 70   PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPA 117
             I+V   + S L  L+            F    ++ +    I+E+     +  ++     
Sbjct: 1009 KILVFSQWTSMLDLLEPALQEAHIFFSRFDGSMSMREKDNVIREFGHLRSQTRVMLCSLK 1068

Query: 118  SCGHGLNLQYGGNILV---FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                GLNL     + +   + + WW+  + +Q I+R+      + G  R V V  L+  +
Sbjct: 1069 CTSMGLNLTMASRVFIVGTWTAPWWNPMQEEQAIDRV-----HRIGQMREVIVERLVIPD 1123

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E VL   + K  + + +L+
Sbjct: 1124 TVEERVLLLQQNKQMLANAVLD 1145


>gi|13386044|ref|NP_080815.1| chromodomain-helicase-DNA-binding protein 1-like [Mus musculus]
 gi|81916841|sp|Q9CXF7|CHD1L_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|12852350|dbj|BAB29376.1| unnamed protein product [Mus musculus]
 gi|30931375|gb|AAH52385.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  ++  KC    +    +D       E         
Sbjct: 289 MKDLDAFENET-----AKKVKLQNILTQLRKC---VDHPYLFDGVEPEPFEVGEHLIEAS 340

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 341 GKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 400

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +    I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 401 KNFGNQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 454

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 455 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|302415028|ref|XP_003005346.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
 gi|261356415|gb|EEY18843.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
          Length = 969

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 21/169 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
            E  W E    K+  +  +I +  AN   ++V   F   +  L++               
Sbjct: 784 PEGSWME--SGKVTKMLELIHQYQANGDRVLVFSKFAKVIEILREVLHTDGIKHCVLYGA 841

Query: 95  ---DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++    I E+NE   IP+      + G G+NL    N ++ F    + ++  Q    
Sbjct: 842 TSVEERQGLINEFNENTDIPVFLLTTGAGGTGINLT-SANKVIIFDQSDNPQDDIQA--- 897

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G  R V V  L+ + TI+EL+ +    K  + + +  A++
Sbjct: 898 --ENRAHRLGQTRDVEVIRLLTRRTIEELIFKACEKKIELANKVTGAVE 944


>gi|294659540|ref|XP_002770598.1| DEHA2G08800p [Debaryomyces hansenii CBS767]
 gi|199434043|emb|CAR65933.1| DEHA2G08800p [Debaryomyces hansenii]
          Length = 1225

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------- 89
            +Y  +           I  L+++ E++    ++V   F+S L  ++              
Sbjct: 1038 LYLYDPTKTSSKIQCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVY 1097

Query: 90   --QGRT-LDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               GR  +++    ++ +    +E K+ +L     + G GLNL    +       WW   
Sbjct: 1098 KFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1156

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+R+      + G    V V   I  ++I+  +L+    K  I + +
Sbjct: 1157 VEDQAIDRL-----HRIGQNSNVKVTRFIMADSIETKMLKIQERKKQIGEAV 1203


>gi|70946126|ref|XP_742810.1| ATP-dependant helicase [Plasmodium chabaudi chabaudi]
 gi|56521995|emb|CAH89085.1| ATP-dependant helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 631

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
               +   K+ ALE ++ K        ++   F   L  L+                  +
Sbjct: 254 KDISLGSGKLFALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKV 313

Query: 95  DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++    + ++N  K   +  +   S   G+NL    N+++F+   W+    +Q ++R   
Sbjct: 314 EQRQKIVTKFNNDKSYFIFISSTRSGSIGINLT-AANVVIFYDTDWNPSIDKQAMDRC-- 370

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V V+  + + T++E + ++   K  + ++ +N
Sbjct: 371 ---HRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICIN 410


>gi|296417472|ref|XP_002838381.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634311|emb|CAZ82572.1| unnamed protein product [Tuber melanosporum]
          Length = 1069

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------K 86
           G  Y  +E      +  K+  L+ ++++  A  + +++    +  L  L+          
Sbjct: 410 GPPYTTDEHII--DNSGKMVMLDKLLKRMKAQKSRVLIFSQMSRQLDILEDYCVFREYPY 467

Query: 87  AFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               G T  +D    I E+N+   +  +      + G G+NL    +I+V +   W+ + 
Sbjct: 468 CRIDGSTAHEDRITAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA 526

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Q ++R       + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 527 DLQAMDR-----AHRIGQTKQVMVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRSQ 579


>gi|171677949|ref|XP_001903925.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937043|emb|CAP61702.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1057

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 391 EMQVKWYKRILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 450

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ +++  +A  + +++    +  L  L+               G 
Sbjct: 451 EHLV--FNSGKMIILDKLLKRMQAQDSRVLIFSQMSRLLDILEDYCVFRGYKYCRIDGGT 508

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+   +  +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 509 AHEDRIAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR 567

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 568 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 608


>gi|4584529|emb|CAB40760.1| putative protein [Arabidopsis thaliana]
 gi|7270094|emb|CAB79908.1| putative protein [Arabidopsis thaliana]
          Length = 1067

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 30/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEKA--NAAPIIVAYH 76
            +K  Q+ +      + +   E  +E          K++ L+ ++ K       +++   
Sbjct: 379 LMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQ 438

Query: 77  FNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN--EGKIPLLFAHPASCGHGLN 124
           F   L  L+  F           G+    +    I  +N              + G G+N
Sbjct: 439 FQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGIN 498

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+     Q + R+      + G    V +Y LI + T++E +++  
Sbjct: 499 L-ATADTVIIYDSDWNPHADLQAMARV-----HRLGQTNKVMIYRLIHKGTVEERMMEIT 552

Query: 185 RTKSTIQDLLL 195
           + K  ++ L++
Sbjct: 553 KNKMLLEHLVV 563


>gi|325088120|gb|EGC41430.1| chromodomain helicase [Ajellomyces capsulatus H88]
          Length = 1530

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 984  ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQK 1043

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + +V     ++  +  Q + R       
Sbjct: 1044 QIDEFNVPGSPYFAFLLSTRSGGVGINL-ATADTVVIMDPDFNPHQDIQALSR-----AH 1097

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ V V+ L+ + + +E ++Q  + K  +  +L+ 
Sbjct: 1098 RIGQRKKVLVFQLVTKGSAEEKIMQMGKKKMALDQVLIE 1136


>gi|58331268|ref|NP_060139.2| DNA excision repair protein ERCC-6-like [Homo sapiens]
 gi|121948339|sp|Q2NKX8|ERC6L_HUMAN RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like; AltName:
           Full=PLK1-interacting checkpoint helicase; AltName:
           Full=Tumor antigen BJ-HCC-15
 gi|84798788|gb|AAI11487.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6-like [Homo sapiens]
 gi|155675838|gb|ABU25227.1| Plk1-interacting checkpoint helicase [Homo sapiens]
          Length = 1250

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDP 98
             K+  L  ++++        +V       L  +++      F   R        L+++ 
Sbjct: 459 SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREK 518

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 519 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 572

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 573 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 604


>gi|228213|prf||1718318A GAM1 gene
          Length = 1703

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1088 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1147

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1148 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1201

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1202 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1240


>gi|6324864|ref|NP_014933.1| Snf2p [Saccharomyces cerevisiae S288c]
 gi|134589|sp|P22082|SNF2_YEAST RecName: Full=Transcription regulatory protein SNF2; AltName:
            Full=ATP-dependent helicase SNF2; AltName:
            Full=Regulatory protein GAM1; AltName: Full=Regulatory
            protein SWI2; AltName: Full=SWI/SNF complex component
            SNF2; AltName: Full=Transcription factor TYE3
 gi|4500|emb|CAA40969.1| GAM1/SNF2 protein [Saccharomyces cerevisiae]
 gi|172632|gb|AAA35059.1| SNF2protein [Saccharomyces cerevisiae]
 gi|806532|dbj|BAA14423.1| RIC1 [Saccharomyces cerevisiae]
 gi|1279713|emb|CAA61793.1| regulatory protein gam1 [Saccharomyces cerevisiae]
 gi|1420644|emb|CAA99517.1| SNF2 [Saccharomyces cerevisiae]
 gi|285815161|tpg|DAA11054.1| TPA: Snf2p [Saccharomyces cerevisiae S288c]
          Length = 1703

 Score = 91.5 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1088 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1147

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1148 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1201

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1202 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1240


>gi|302659152|ref|XP_003021270.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
 gi|291185160|gb|EFE40652.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
          Length = 922

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 645 KRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 702

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G KR   +Y L+ +  I+E + QR  TK  + D ++
Sbjct: 703 ----HRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVM 741


>gi|213408929|ref|XP_002175235.1| SNF2 family helicase Rhp26 [Schizosaccharomyces japonicus yFS275]
 gi|212003282|gb|EEB08942.1| SNF2 family helicase Rhp26 [Schizosaccharomyces japonicus yFS275]
          Length = 983

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 26/172 (15%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-------- 87
           G  Y D +K        K+K ++ +++  K+     ++       L  L+KA        
Sbjct: 618 GYEYGDPKK------SGKLKVVQALLKLWKSQNHRTLLFSQTRQMLDILEKAIGSMGDIS 671

Query: 88  ---FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   ++      + E+N+  +  +        G G+NL  G + ++ F   W+   
Sbjct: 672 YCRMDGTTSIGLRQGLVDEFNKTSRYDVFLLTTRVGGLGINLT-GADRVIIFDPDWNPST 730

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q  ER       + G KR V VY L++  TI+E +  R   K  + + +L
Sbjct: 731 DAQARERAW-----RLGQKRDVVVYRLMSSGTIEEKIYHRQIFKQFLTNKIL 777


>gi|148675185|gb|EDL07132.1| mCG19747 [Mus musculus]
          Length = 1723

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 796 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 855

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 856 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 909

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 910 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|26340418|dbj|BAC33872.1| unnamed protein product [Mus musculus]
          Length = 1081

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 861

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 862 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 915

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 948


>gi|74227041|dbj|BAE38319.1| unnamed protein product [Mus musculus]
          Length = 883

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  ++  KC    +    +D       E         
Sbjct: 289 MKDLDAFENET-----AKKVKLQNILTQLRKC---VDHPYLFDGVEPEPFEVGEHLIEAS 340

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 341 GKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 400

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +    I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 401 KNFGNQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 454

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 455 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|151945372|gb|EDN63615.1| transcriptional regulator [Saccharomyces cerevisiae YJM789]
          Length = 1706

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1091 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1150

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1151 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1204

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1205 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|50547625|ref|XP_501282.1| YALI0C00363p [Yarrowia lipolytica]
 gi|49647149|emb|CAG81577.1| YALI0C00363p [Yarrowia lipolytica]
          Length = 1320

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 22/181 (12%)

Query: 31  KCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL--- 84
           K L LA NGA   +  +    +   K+  L+ ++ +   +   +++       L  L   
Sbjct: 591 KFLSLAENGASRENVFRGMI-MTSGKMVLLDKLLTQLKKDGHRVLIFSQMVRMLDILGDY 649

Query: 85  -------QKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFF 135
                   +              I  +N       +      + G G+NL    + ++ F
Sbjct: 650 LQIKGYQFQRLDGTVPSATRRIAIDHYNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIF 708

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+ +   Q + R       + G K  V VY  ++++T++E VL+R R K  ++  ++
Sbjct: 709 DSDWNPQADLQAMAR-----AHRIGQKNHVMVYRFVSKDTVEEQVLERARKKMILEYAII 763

Query: 196 N 196
           +
Sbjct: 764 S 764


>gi|190407590|gb|EDV10857.1| transcription regulatory protein SNF2 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1706

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1091 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1150

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1151 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1204

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1205 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba dispar
            SAW760]
          Length = 1623

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC- 99
               K+  L+ ++ K N     +++       L  L+K             G     D   
Sbjct: 964  SSGKMVLLDKLLPKLNTDGHKVLIFSQLKGVLDILEKYLSYKKYTYERLDGSVRSNDRQN 1023

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             I  + +G+  +      + G G+NL    + ++ +   W+ +   Q   R       + 
Sbjct: 1024 AIDRFMKGERFVFLLCTRAGGIGINLSE-ADTVIIYDSDWNPQNDLQAQARC-----HRI 1077

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+ V VY L+++NT +  + +R   K  +   +L+
Sbjct: 1078 GQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAILS 1114


>gi|123503388|ref|XP_001328501.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121911445|gb|EAY16278.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1247

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLD-----KDPCTIQEWNEG--KIPLLFA 114
               +++   F   L  +Q     K     R        +    I  ++     IP+   
Sbjct: 497 EGHRVLIFSQFTLILDIIQDYLNLKGIKYVRLDGNVRGPERQAAIDNFSRDGSDIPIFLL 556

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ +   Q   R       + G  ++V VY  +  N
Sbjct: 557 TTRAGGQGINLT-AADTVIIYDSDWNPQNDIQATARC-----HRIGQTKSVKVYRFLTSN 610

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           + +  +      K  +   +L    KE
Sbjct: 611 SYERSMFDIASRKLGLDHAVLEGSSKE 637


>gi|119495934|ref|XP_001264742.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
 gi|119412904|gb|EAW22845.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
          Length = 1523

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
           ++ Y     + Y  L  G   +  +  +  ++  + +N   ++ + E    E    +   
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 59  LEVIIEKA---------------NAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
           L  +I  +               +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +   Q + R 
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR- 868

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  R V VY L++++T++E V++R R K
Sbjct: 869 ----AHRIGQTRPVSVYRLVSKDTVEEEVIERARNK 900


>gi|66771903|gb|AAY55263.1| IP13006p [Drosophila melanogaster]
          Length = 726

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
           I  LE ++   N   IIV   + S LA ++K                T  +    ++++N
Sbjct: 557 IDKLEELLTGTNDK-IIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRDFN 615

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  +L     + G GLNL    ++L+   L W+ +  +Q  +RI      + G  + 
Sbjct: 616 ANNEKRVLLLSLTAGGVGLNLNVANHMLI-VDLHWNPQLERQAQDRI-----YRYGQTKP 669

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F+Y  + Q+T+++ +      K  I  ++L
Sbjct: 670 TFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 700


>gi|19115773|ref|NP_594861.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe 972h-]
 gi|46397295|sp|Q9UTN6|SNF21_SCHPO RecName: Full=Chromatin structure-remodeling complex subunit snf21;
           AltName: Full=ATP-dependent helicase snf21; AltName:
           Full=RSC complex subunit snf21
 gi|5830480|emb|CAB54824.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe]
 gi|42558224|dbj|BAD11105.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Schizosaccharomyces pombe]
          Length = 1199

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANG-AVYYDEEKHWKEVH----- 52
           K Y++ ++     ++                +QL    N   V+ D E+           
Sbjct: 671 KLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDM 730

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DK 96
                 K + L+ I+ K   +   I++ +     +  +         +     G T  D 
Sbjct: 731 LWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADD 790

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+   ++ L      + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 791 RSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QD 844

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  + V +Y LI + +++E +L R + K  I   ++ A K
Sbjct: 845 RAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGK 889


>gi|297741672|emb|CBI32804.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 32/167 (19%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           Y+ E    E    K+  L   +  +         +V   F   L  L++           
Sbjct: 659 YNSEIPSSECTSSKVLTLLKFLSASRDQNPSTKSVVFSQFRKMLLLLEQPLKAA------ 712

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                        +L A   + G G+NL    + +     WW+    +Q ++R+      
Sbjct: 713 -------------VLLASLKASGAGINLT-AASRVYLLEPWWNPAVEEQAMDRV-----H 753

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G K  V +  LIA+N+I+E +L+    K  +      A  +  + 
Sbjct: 754 RIGQKEDVKIVRLIARNSIEERILELQERKKKLAK---EAFGRRGLK 797


>gi|119622565|gb|EAX02160.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622567|gb|EAX02162.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622569|gb|EAX02164.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|239740390|gb|ACS13730.1| chromodomain-helicase-dna-binding protein 2 [Homo sapiens]
          Length = 1739

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|2645435|gb|AAB87384.1| CHD3 [Drosophila melanogaster]
          Length = 1518

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
              K+  L  ++++  A+   +++       L  + + F +G              D   
Sbjct: 587 ASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLN-ILEHFLEGEGYQYDRIDGSIKGDLRQ 645

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N+   +  +      + G G+NL    + ++ F   W+     Q       +R 
Sbjct: 646 KAIDRFNDPVSEHFVFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDVQA-----FSRA 699

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K+ V +Y  +  N+++E ++Q  + K  +
Sbjct: 700 HRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMML 733


>gi|2645431|gb|AAB87382.1| CHD2 [Homo sapiens]
          Length = 1739

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|66359998|ref|XP_627177.1| SNF2L ortholog with a SWI/SNF2 like ATpase and a Myb domain
           [Cryptosporidium parvum Iowa II]
 gi|46228591|gb|EAK89461.1| SNF2L ortholog with a SWI/SNF2 like ATpase and a Myb domain
           [Cryptosporidium parvum Iowa II]
          Length = 1308

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYD---------EEKHW 48
           K Q+++Y +L   N++  NSAS          ++  +  N    +D         E  H 
Sbjct: 451 KLQKKIYSELLTRNLDVLNSASSNKTQMLNLLMQLRKTCNHPYLFDGVEPGPPYVEGFHM 510

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT- 100
            E    K+  L  ++ K  +  + +++       L  +        +P  R     P   
Sbjct: 511 VE-ASGKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWCGYPYCRIDGSTPGIE 569

Query: 101 ----IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+   +  +      + G G+NL    ++++ F   ++ +   Q ++R    
Sbjct: 570 RQERIDIFNKEGSEKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQMDLQAMDR---- 624

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  + + T++E +++R   K  +  L++ 
Sbjct: 625 -AHRIGQKKPVTVYRFVTEKTVEERIVERAAKKLKLDSLIIQ 665


>gi|327263233|ref|XP_003216425.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
           carolinensis]
          Length = 1803

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 36/181 (19%)

Query: 55  KIKALEVIIEKAN---------------AAPIIVAYHFNSDLARLQKAFP---------Q 90
           K +AL+ +I  +                 + +++       L  L +             
Sbjct: 776 KQEALQNLIRSSGKLILLDKLLIRLRERGSRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 835

Query: 91  GRTLDK-DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G    +     +  +N EG           + G G+NL    + +V F   W+ +   Q 
Sbjct: 836 GSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQA 894

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETIH 204
             R       + G K+ V +Y L+ + +++E +L+R + K  +  L+   ++   K  +H
Sbjct: 895 QAR-----AHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLH 949

Query: 205 V 205
            
Sbjct: 950 T 950


>gi|296204004|ref|XP_002806940.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Callithrix jacchus]
          Length = 1738

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 774 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 833

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 834 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 888 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|302915751|ref|XP_003051686.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
 gi|256732625|gb|EEU45973.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
          Length = 1557

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QG 91
           G+V  +++         K+  L+ ++ K   +   +++       L  L         + 
Sbjct: 753 GSVRREDQIKGLIASSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKF 812

Query: 92  RTLDKD------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD           I  +N              + G G+NL    + +V F   W+ + 
Sbjct: 813 QRLDGTIAAGPRRMAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA 871

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 872 DLQAMAR-----AHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 920


>gi|255955967|ref|XP_002568736.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590447|emb|CAP96635.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1399

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  ++     G T   D   + +
Sbjct: 853  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLR 912

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N              + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 913  QFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIG 966

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 967  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1005


>gi|159131149|gb|EDP56262.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           A1163]
          Length = 1523

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
           ++ Y     + Y  L  G   +  +  +  ++  + +N   ++ + E    E    +   
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 59  LEVIIEKA---------------NAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
           L  +I  +               +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +   Q + R 
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR- 868

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  R V VY L++++T++E V++R R K
Sbjct: 869 ----AHRIGQTRPVSVYRLVSKDTVEEEVIERARNK 900


>gi|114658985|ref|XP_510607.2| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 10
           [Pan troglodytes]
          Length = 1739

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|326431300|gb|EGD76870.1| BTAF1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1863

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                A   +              + E+N+   + +L    +  G GLNL  G + ++F  
Sbjct: 1671 RHMPALTYRRLDGDTPTHMRAEVVAEFNDDPTVDVLLLTTSVGGLGLNLT-GADTVIFLE 1729

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+  +  Q ++R       + G  R V VY LI +NT++E ++   R K  + + +++
Sbjct: 1730 HDWNPMKDLQAMDR-----AHRIGQGRTVNVYRLITRNTLEEKIMNLQRFKLNMANTIVS 1784


>gi|321264770|ref|XP_003197102.1| swi2/Snf2-related ATPase, component of the SWR1 complex; Swr1p
           [Cryptococcus gattii WM276]
 gi|317463580|gb|ADV25315.1| Swi2/Snf2-related ATPase, component of the SWR1 complex, putative;
           Swr1p [Cryptococcus gattii WM276]
          Length = 932

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 17/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG-KIPLLF 113
           KA    +++   F   L  L+ A            G+T  D+    + E+N+   I +  
Sbjct: 759 KAEGKRMLLFSQFVMILDILEGALNHLGIRYTRLDGQTKTDERQSLVDEFNDDTSITVFL 818

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +++V +   ++        +R    R  + G +R V V  LI +
Sbjct: 819 LSTKAGGVGINLT-AASVVVIYDQDFNPH-----NDRQAADRAYRIGQEREVEVIKLITK 872

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           N+IDE +L+   TK  + D++
Sbjct: 873 NSIDEDMLEIGLTKLQLDDMV 893


>gi|258573753|ref|XP_002541058.1| hypothetical protein UREG_00572 [Uncinocarpus reesii 1704]
 gi|237901324|gb|EEP75725.1| hypothetical protein UREG_00572 [Uncinocarpus reesii 1704]
          Length = 1290

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAH 115
              +++   F   L  ++        L           +    I ++N    P       
Sbjct: 806 GHRVLIFSQFLGFLDIIEDFLDGLGLLHLRLDGSLSSLQRQKRIDQFNAPNSPYFTFLLS 865

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++     ++  +  Q + R       + G +R V V+ L+ + T
Sbjct: 866 TRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQQRKVLVFQLMTKGT 919

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           ++E ++Q  R K  +   L+  +  E
Sbjct: 920 VEEKIIQIGRKKMALDQALIGFMDAE 945


>gi|94733808|emb|CAK04334.1| novel protein similar to human chromodomain helicase DNA binding
           protein 2 (CHD2) [Danio rerio]
          Length = 1694

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQ 102
           K+  L+ ++ +       +++       L  L               G    +     + 
Sbjct: 787 KLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALD 846

Query: 103 EWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N EG           + G G+NL    + +V F   W+ +   Q   R       + G
Sbjct: 847 HFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIG 900

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 901 QKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRM 938


>gi|46125449|ref|XP_387278.1| hypothetical protein FG07102.1 [Gibberella zeae PH-1]
          Length = 1627

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------Q 85
           G+V  +++         K+  L+ ++ K N     +++       L  L           
Sbjct: 747 GSVRREDQIKGLIASSGKMMLLDQLLSKLNKDGHRVLIFSQMVKMLDILGDYCSLRGYKF 806

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +              I  +N              + G G+NL    + ++ F   W+ + 
Sbjct: 807 QRLDGTIAAGPRRMAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA 865

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 866 DLQAMAR-----AHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 914


>gi|322694382|gb|EFY86213.1| chromatin remodelling complex ATPase chain ISW1 [Metarhizium
           acridum CQMa 102]
          Length = 1120

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 427 EMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 486

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++ +     + +++    +  L  L         +     G T
Sbjct: 487 EHLV--YNAGKMAVLDKLLVRLQKQGSRVLIFSQMSRLLDILEDYCVFRDYKYCRIDGGT 544

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+   +  +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 545 AHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR 603

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 604 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 644


>gi|242764399|ref|XP_002340764.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218723960|gb|EED23377.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1045

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 51  VHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
           V   K++AL  I+ ++A     IV   F   L +++    + +            D    
Sbjct: 804 VPSTKVRALIRILRKEAPEYKFIVFSVFTQMLDKIEPFLKRAKLGYARYDGSMRNDLREA 863

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++++  N     +L     +   GLNL    + +V    +W+    +Q I+R+      +
Sbjct: 864 SLEKLRNHSNTRILLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HR 917

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 V +Y +  +NT++E +L     K  + +  +  
Sbjct: 918 LNQTIDVKIYKITIKNTVEERILDLQERKRELANATIEG 956


>gi|154334239|ref|XP_001563371.1| DNA excision repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060387|emb|CAM37551.1| putative DNA excision repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1258

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GR 92
                   +   K+ AL +++++       +++       L  ++    Q         G 
Sbjct: 851  SNNPVNLLGSGKLNALLMMLKEWQLFGHRVLIFSQTRMMLDIIENMCEQHAYRYIRMDGE 910

Query: 93   TLDKDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       +   +NE   I +        G G+NL  G + +V F   W+     Q  ER
Sbjct: 911  TNGHHRQELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNPITDVQARER 969

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 970  AW-----RIGQKREVCVYRLITSGSVEEAILRRQLAKMYVTDKVL 1009


>gi|154421756|ref|XP_001583891.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121918135|gb|EAY22905.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1924

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLF 113
            +   +++       L  LQ          +        D+    I  +N+   P  +  
Sbjct: 853 NDGHRVLIFSQMTRMLDILQDYLYNRGYEYERIDGTIRGDERQKAIDRYNKPNSPIFVFL 912

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ +   W+ +   Q   R       + G  + V VY  I  
Sbjct: 913 LCTHAGGLGINLT-SADTVIIYDSDWNPQNDIQATARC-----HRIGQTKEVKVYRFITA 966

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           N+ +  +  R   K  +   +L    K+ +  
Sbjct: 967 NSYERKMFDRASYKLGLDHAVLEGTGKQQMKT 998


>gi|312211534|emb|CBX91619.1| similar to chromatin remodelling complex ATPase chain ISW1
           [Leptosphaeria maculans]
          Length = 1189

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N  +             +QL               G  Y  +
Sbjct: 504 DMQVQWYKKILEKDIDAVNGGAGTKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 563

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ ++++  A  + +++    +  L  +         Q     G T
Sbjct: 564 EHLV--TNAAKMVMLDKLLKRMKAKGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGST 621

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I ++N+   +  L      + G G+NL    +++V F   W+ +   Q ++R
Sbjct: 622 AHEDRIQAIDDYNKEGSEKFLFLLTTRAGGLGINLTT-ADVVVLFDSDWNPQADLQAMDR 680

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+V+  + ++ I+E VL+R   K  +  L++   + +
Sbjct: 681 -----AHRIGQTKQVYVFRFVTESAIEEKVLERAAQKLRLDQLVIQQGRTQ 726


>gi|302681469|ref|XP_003030416.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
 gi|300104107|gb|EFI95513.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
          Length = 1312

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKD 97
            ++  K+  L+ ++ +   +   +++       L            + +        D  
Sbjct: 548 VMNSGKMVLLDKLLARLRQDGHRVLIFSQMVRMLDILSDYMSLRGYIHQRLDGTIASDAR 607

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N    P         + G G+NL    + ++ F   W+ +   Q + R     
Sbjct: 608 KKAMAHFNMPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR----- 661

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V VY  ++++T++E +L++ + K  ++  ++N +     H+
Sbjct: 662 AHRIGQKSHVSVYRFVSKDTVEEEILEKAKAKMVLEYAIINQMDTTQAHL 711


>gi|258563128|ref|XP_002582309.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907816|gb|EEP82217.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 939

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   +K    + ++N               + G GLNL  G + LV F + W+   
Sbjct: 667 RLDGSTPANKRQYLVDDFNRSSSSSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPAT 725

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q + RI      + G KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 726 DIQAMARI-----HRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKIGLADSVMD 773


>gi|195569079|ref|XP_002102539.1| GD19959 [Drosophila simulans]
 gi|194198466|gb|EDX12042.1| GD19959 [Drosophila simulans]
          Length = 1069

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 50   EVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
                 KI  +  I++    K++    IV   + S L  L+    +             + 
Sbjct: 894  HRPSSKINMVIQILKTTILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVK 953

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + E+N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI  
Sbjct: 954  NRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI-- 1010

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 1011 ---YRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 1053


>gi|119494890|ref|XP_001264246.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
           NRRL 181]
 gi|119412408|gb|EAW22349.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
           NRRL 181]
          Length = 969

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 46  KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           +H+      KI+ L+ ++     + +  I++  ++ S L  L                  
Sbjct: 614 RHFSPSCSAKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNMLANLLNSLSLPFLRLDGST 673

Query: 93  TLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              K    ++++N               + G GLNL  G + LV F + W+     Q + 
Sbjct: 674 PAQKRQALVEDFNRLPPNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDVQAMA 732

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G KR  ++Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 733 RI-----HRDGQKRHCWIYRVLLKGSLEERIWQRQVTKIGLADSVME 774


>gi|317140694|ref|XP_001818358.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1126

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + +   KI  L  ++++   N    ++   F   +  L+              GRT 
Sbjct: 936  KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 995

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 996  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1050 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1091


>gi|315032634|gb|EFT44566.1| protein, SNF2 family [Enterococcus faecalis TX0017]
          Length = 1016

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++ + LWW+    +Q   R       + G K+
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKK 1010


>gi|289614871|emb|CBI58408.1| unnamed protein product [Sordaria macrospora]
          Length = 908

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 1   MKQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           MK+  + + R+   +     ++A +     + C        +   +  W E    K++AL
Sbjct: 676 MKRVDQSELRQPKIEHLINELKALSDFELHLWCRDYKCIRSFDLPDGSWME--SAKVQAL 733

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWN-E 106
             +I++   N    +V   F   +          +++    QG T + +    I E+N +
Sbjct: 734 LKLIKQYQKNGDRALVFTRFAKVIEILGECLASEKIEYLSLQGNTDVSERQELINEFNAD 793

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP+      S G G+NL    N ++ F    + ++  Q        R  + G  R V 
Sbjct: 794 ATIPVFLLTTGSGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRAHRLGQTRPVE 847

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +  LI+++T++ELV +  + K  + + ++
Sbjct: 848 IIRLISKDTVEELVYKACQKKLELANKVV 876


>gi|70995269|ref|XP_752395.1| chromodomain helicase (Chd1) [Aspergillus fumigatus Af293]
 gi|66850030|gb|EAL90357.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           Af293]
          Length = 1523

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
           ++ Y     + Y  L  G   +  +  +  ++  + +N   ++ + E    E    +   
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 59  LEVIIEKA---------------NAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
           L  +I  +               +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +   Q + R 
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR- 868

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  R V VY L++++T++E V++R R K
Sbjct: 869 ----AHRIGQTRPVSVYRLVSKDTVEEEVIERARNK 900


>gi|195111727|ref|XP_002000429.1| GI22534 [Drosophila mojavensis]
 gi|193917023|gb|EDW15890.1| GI22534 [Drosophila mojavensis]
          Length = 1070

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
               K+  +  I++          IV   + S L   +    + +                
Sbjct: 899  PSTKLLKVLEILKTNVLKTKDKAIVVSQWTSVLDIFRDLLEKEKLKSLSLNGTIPVKNRQ 958

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI     
Sbjct: 959  DIVNDFNDPNNSNRILLLSLTAGGVGLNL-IGANHLILLDLHWNPQLEAQAQDRI----- 1012

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G K+ V +Y ++  +T+++ +      K  + D +L  
Sbjct: 1013 YRVGQKKDVIIYKIVCVDTVEQRIKALQDRKLELADGVLTG 1053


>gi|125833380|ref|XP_688972.2| PREDICTED: DNA excision repair protein ERCC-6 [Danio rerio]
          Length = 1390

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAH 115
               +++       L  L+    +            T+      I ++N    I +    
Sbjct: 832 QGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILT 891

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+     Q  ER       + G K+ V VY L+   T
Sbjct: 892 TRVGGLGVNLT-GANRVVIYDPDWNPSTDTQARERAW-----RIGQKQQVTVYRLLTAGT 945

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 946 IEEKIYHRQIFKQFLTNRVLKDPKQR 971


>gi|256272521|gb|EEU07500.1| Snf2p [Saccharomyces cerevisiae JAY291]
          Length = 1706

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 1091 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 1150

Query: 103  EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1151 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1204

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1205 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|255594207|ref|XP_002536048.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223521096|gb|EEF26335.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 267

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 17/127 (13%)

Query: 69  APIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWNE-GKIPLLFAHPA 117
              IV   +   L  L+        Q R LD           ++++N   ++ ++     
Sbjct: 131 EKAIVFSQWTRMLDLLEACLKSSSVQYRRLDGTMSVVARDKAVKDFNTIPEVSVMIMSLK 190

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLN+      ++   LWW+     Q I+R       + G  R V V+ L  ++T++
Sbjct: 191 AASLGLNM-VAACRVLLLDLWWNPTTEDQAIDR-----AHRIGQTRPVTVFRLTVKDTVE 244

Query: 178 ELVLQRL 184
           + +L   
Sbjct: 245 DRILALQ 251


>gi|222630854|gb|EEE62986.1| hypothetical protein OsJ_17794 [Oryza sativa Japonica Group]
          Length = 947

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIE--KANAAP 70
           +++ +  +A  +A+     ++L  G    +         H  K++ALE ++         
Sbjct: 570 EIEKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDK 629

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           I++  +    L  L+K           F     ++     I E+N      +      + 
Sbjct: 630 ILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAG 689

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NL    N +V F   W+  +  Q        R  + G +R V V+ L+   +++EL
Sbjct: 690 NLGVNL-VSANRVVIFDPSWNPAQDLQA-----QDRSFRFGQRRHVTVFRLLGAGSLEEL 743

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +  R   K  + ++ ++ 
Sbjct: 744 IYSRQIYKQQLSNIAVSG 761


>gi|121700957|ref|XP_001268743.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
           NRRL 1]
 gi|119396886|gb|EAW07317.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
           NRRL 1]
          Length = 976

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 675 KRQSLVEDFNRLPADLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 732

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 733 ----HRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 772


>gi|320587549|gb|EFX00030.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 1181

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 72   IVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            +V   F S L+ ++ A                       ++++       +L     + G
Sbjct: 1014 VVFSQFTSFLSLIEPALRRDNMAFLRLDGTMAQKARAAVLEDFRRSDRFTVLLISLRAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL     + V    WW      Q I+R+      + G    V VY  IA+ +++E +
Sbjct: 1074 VGLNLTMAKRVFVM-DPWWSFSVEAQAIDRV-----HRMGQDEEVKVYRFIAKGSVEEKM 1127

Query: 181  LQRLRTKS 188
            L+    K 
Sbjct: 1128 LKIQDRKK 1135


>gi|294659312|ref|XP_461680.2| DEHA2G03102p [Debaryomyces hansenii CBS767]
 gi|199433866|emb|CAG90128.2| DEHA2G03102p [Debaryomyces hansenii]
          Length = 1590

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRE--LYCDLQGENIEAF---NSASKTVKCLQLANG-AVYYDEEK---HWKEVH 52
            K Y +  +   LY    GE  +     N+ ++ ++  ++ N   VY + E       E +
Sbjct: 950  KLYQQMLKYNILYASKPGEGDKPVLIKNANNQIMQLRKICNHPFVYEEVENLINPASETN 1009

Query: 53   DE------KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTL- 94
            D+      K + L+ ++ K   +   +++ +              L  ++     G T  
Sbjct: 1010 DQIWRVAGKFELLDKVLPKFKNSGHRVLIFFQMTQIMDIMEDFLRLRGMKYMRLDGSTKA 1069

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1070 DDRTGLLKLFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 1123

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1124 QDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1170


>gi|222618922|gb|EEE55054.1| hypothetical protein OsJ_02753 [Oryza sativa Japonica Group]
          Length = 755

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK-IPLLF 113
           K     +++       L  +++A               T  K    I+ +      P+  
Sbjct: 491 KEEGHKVLIFSQTRLMLDEIEEALTNKGVHFARMDGTVTASKREAIIKGFQSKDGPPIFL 550

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G GLNL    + ++     W+     Q ++R+      + G ++ V +Y LI  
Sbjct: 551 MTTKVGGIGLNLTN-ASRVIIADPSWNPSLDNQCVDRV-----YRIGQEKNVIIYRLITS 604

Query: 174 NTIDELVLQRLRTKSTIQDL 193
            TI+E + ++  +K  I   
Sbjct: 605 CTIEERIYEKQVSKEGIFKA 624


>gi|195344342|ref|XP_002038747.1| GM10445 [Drosophila sechellia]
 gi|194133768|gb|EDW55284.1| GM10445 [Drosophila sechellia]
          Length = 547

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
           I  LE I+   N   IIV   + S LA ++K                T  +    ++++N
Sbjct: 378 IDKLEEILTGTNDK-IIVTSQWVSYLAIIRKRLQDLSWETLDFNGQLTAKEREIVVRDFN 436

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L     + G GLNL    ++L+   L W+ +  +Q  +RI      + G  + 
Sbjct: 437 ANNDKRVLLLSLTAGGVGLNLNVANHMLI-VDLHWNPQLERQAQDRI-----YRYGQTKP 490

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F+Y  + Q+T+++ +      K  +  ++L
Sbjct: 491 TFIYRYMCQDTVEQRIKSLQDCKLEMAKVVL 521


>gi|172036268|ref|YP_001802769.1| hypothetical protein cce_1353 [Cyanothece sp. ATCC 51142]
 gi|171697722|gb|ACB50703.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 1046

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYG 128
             ++  Y        +   +   R + +     +  ++   P +      + G GLNL   
Sbjct: 896  KLLKPYLEKKFAQEVLFLYGATRRIQRQEMIDRFQHDPNGPRIFILSLKAGGTGLNLTR- 954

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N +     WW+     Q  +R       + G KR V V+  +   T++E + + L +K 
Sbjct: 955  ANHVFHIDRWWNPAVENQATDR-----AFRLGQKRNVQVHKFVCTGTLEERINEMLESKQ 1009

Query: 189  TIQDLLLNA 197
             + +  +++
Sbjct: 1010 KLAEQTVDS 1018


>gi|115462843|ref|NP_001055021.1| Os05g0247900 [Oryza sativa Japonica Group]
 gi|54291735|gb|AAV32104.1| uknown protein [Oryza sativa Japonica Group]
 gi|113578572|dbj|BAF16935.1| Os05g0247900 [Oryza sativa Japonica Group]
 gi|125551533|gb|EAY97242.1| hypothetical protein OsI_19162 [Oryza sativa Indica Group]
 gi|215701224|dbj|BAG92648.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 856

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIE--KANAAP 70
           +++ +  +A  +A+     ++L  G    +         H  K++ALE ++         
Sbjct: 479 EIEKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDK 538

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           I++  +    L  L+K           F     ++     I E+N      +      + 
Sbjct: 539 ILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAG 598

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NL    N +V F   W+  +  Q        R  + G +R V V+ L+   +++EL
Sbjct: 599 NLGVNL-VSANRVVIFDPSWNPAQDLQA-----QDRSFRFGQRRHVTVFRLLGAGSLEEL 652

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +  R   K  + ++ ++ 
Sbjct: 653 IYSRQIYKQQLSNIAVSG 670


>gi|24644932|ref|NP_524850.2| lodestar [Drosophila melanogaster]
 gi|30581024|sp|P34739|TTF2_DROME RecName: Full=Transcription termination factor 2; AltName:
            Full=Protein lodestar; AltName: Full=RNA polymerase II
            termination factor; AltName: Full=Transcription release
            factor 2
 gi|7298963|gb|AAF54167.1| lodestar [Drosophila melanogaster]
          Length = 1061

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 50   EVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
                 KI  +  I++    K++    IV   + S L  L+    +             + 
Sbjct: 886  HRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVK 945

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + E+N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI  
Sbjct: 946  NRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI-- 1002

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 1003 ---YRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAK 1045


>gi|316974280|gb|EFV57776.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 2137

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
            K     +++       L  ++          +      T       I  +N    P  + 
Sbjct: 1072 KEGGHRVLIFSQMTKMLDLIEDFLEYEGYKYERIDGSVTGSLRQDAIDRFNAPNAPQFVF 1131

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G  R V +Y  + 
Sbjct: 1132 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNRKVMIYRFVT 1185

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            +N+++E +    + K  +  L++ A
Sbjct: 1186 RNSVEERITTVAKKKMMLTHLVVRA 1210


>gi|256961060|ref|ZP_05565231.1| Snf2 family helicase [Enterococcus faecalis Merz96]
 gi|293384550|ref|ZP_06630416.1| Snf2 family protein [Enterococcus faecalis R712]
 gi|293386779|ref|ZP_06631350.1| Snf2 family protein [Enterococcus faecalis S613]
 gi|312906376|ref|ZP_07765384.1| protein, SNF2 family [Enterococcus faecalis DAPTO 512]
 gi|312979465|ref|ZP_07791153.1| SNF2 family N-terminal domain protein [Enterococcus faecalis DAPTO
            516]
 gi|256951556|gb|EEU68188.1| Snf2 family helicase [Enterococcus faecalis Merz96]
 gi|291078096|gb|EFE15460.1| Snf2 family protein [Enterococcus faecalis R712]
 gi|291083782|gb|EFE20745.1| Snf2 family protein [Enterococcus faecalis S613]
 gi|310627530|gb|EFQ10813.1| protein, SNF2 family [Enterococcus faecalis DAPTO 512]
 gi|311287836|gb|EFQ66392.1| SNF2 family N-terminal domain protein [Enterococcus faecalis DAPTO
            516]
          Length = 1016

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
            +  +   +  Q+      + E+         K++ ++  +  A  N   +++   F S L
Sbjct: 868  SILAGLTRLRQICCDPRLFIEDYT---GGSGKVEQVKDFLVAAKENNRRVLLFSQFTSML 924

Query: 82   ARLQKA---------FPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + L+K          + +G T  +D  T+   +NEG+  +      + G GLNL  G + 
Sbjct: 925  SILEKELNELGLETFYLRGSTKPQDRLTMANAFNEGEKDVFLISLKAGGTGLNLT-GADT 983

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++ + LWW+    +Q   R       + G K+
Sbjct: 984  VILYDLWWNPAVEEQAAGR-----AHRMGQKK 1010


>gi|15230608|ref|NP_187252.1| ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|6671969|gb|AAF23228.1|AC013454_15 putative transcriptional regulator [Arabidopsis thaliana]
          Length = 1132

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLAN------GAVYYDEEKHWKEVHDE 54
           K Y+K   ++    LQ  + ++ +  + T++  +  N      G  Y   +K        
Sbjct: 684 KVYYKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASG 743

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQ 102
           K + L+ ++ K       I++       +  L         +     G T  D+    ++
Sbjct: 744 KFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLK 803

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE   P  +      + G GLNLQ   + ++ F   W+ +  QQ  +R       + G
Sbjct: 804 QFNEPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQAEDR-----AHRIG 857

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 858 QKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQA 894


>gi|1345773|sp|P40201|CHD1_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|455015|gb|AAB08486.1| DNA-binding protein [Mus musculus]
          Length = 1711

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 861

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 862 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 915

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 948


>gi|329935238|ref|ZP_08285204.1| bifunctional protein [Streptomyces griseoaurantiacus M045]
 gi|329305061|gb|EGG48920.1| bifunctional protein [Streptomyces griseoaurantiacus M045]
          Length = 726

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 30/197 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + EA+  A +    + +   A Y   EK        K+  L  I+E+A  N    
Sbjct: 497 ELSAADEEAYREAVRAGNFMAMRRAA-YARPEK------SAKLGRLREIVEEAGENGQRT 549

Query: 72  IVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
           +V  +F   L  ++ A                      +    + ++     P +L A  
Sbjct: 550 VVFSYFRDVLDVVRDALTARPGGGAPVFGPLTGSVPPGRRQRIVDDFAATPGPAVLLAQI 609

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   +++V            Q + R       + G  R V V+ L+A   +
Sbjct: 610 QAAGVGLNMQ-AASVVVLCEPQIKPTLEHQAVAR-----AHRMGQVRPVGVHRLLATGGV 663

Query: 177 DELVLQRLRTKSTIQDL 193
           DE +++ L  K+ + D 
Sbjct: 664 DERLVRMLERKTRLFDA 680


>gi|238484689|ref|XP_002373583.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220701633|gb|EED57971.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1126

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + +   KI  L  ++++   N    ++   F   +  L+              GRT 
Sbjct: 936  KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 995

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 996  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1050 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1091


>gi|71004558|ref|XP_756945.1| hypothetical protein UM00798.1 [Ustilago maydis 521]
 gi|74704333|sp|Q4PGG5|RAD5_USTMA RecName: Full=DNA repair protein RAD5
 gi|46095546|gb|EAK80779.1| hypothetical protein UM00798.1 [Ustilago maydis 521]
          Length = 1387

 Score = 91.2 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 52   HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ 102
               K+ AL   +    A       ++   F S L  +     +  F   R     P  ++
Sbjct: 1207 TSTKLSALISHLNTLRATEAAFKGVIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVR 1266

Query: 103  E-----WNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +     +        + L      + G GLNL    N +     WW+     Q I+RI  
Sbjct: 1267 DKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLT-AANKIWLLDFWWNSSIENQAIDRI-- 1323

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                + G    V V+  I +++I++ +L   + K  +
Sbjct: 1324 ---HRFGQTSPVSVFRYIIKDSIEDRILLIQKRKDML 1357


>gi|321255221|ref|XP_003193350.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus gattii
           WM276]
 gi|317459820|gb|ADV21563.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           gattii WM276]
          Length = 899

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA----RLQKAFPQGRT 93
           VY       + ++  KI  L   +     N    +V   F S L     RL++   +   
Sbjct: 706 VYI-PSSQARSINSAKIDELVKYLRIFPRNDK-TLVFSQFTSFLDCVGVRLEEEGIKFVR 763

Query: 94  LD------KDPCTIQEWNEG-------KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D      +    I+ + E        K P ++     S   GLNL    N +     WW
Sbjct: 764 FDGRMSGKQRTAVIKTFQEPVKGDDDEKTPKVMLISLKSGAVGLNLTAASN-VFLCDPWW 822

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                Q  IE   + R  + G K+ V V+ LIA+NTI+  VL   + K  +
Sbjct: 823 -----QSAIEAQAIDRAHRMGQKKIVRVFQLIAENTIESSVLDIQKRKDAM 868


>gi|224145438|ref|XP_002325643.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222862518|gb|EEF00025.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 719

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFP 89
            L+ A    Y+            K + L+ ++ +  A    +++   +   L  +   F 
Sbjct: 452 LLESAFDGSYFYPPVEQIVGKCGKFQLLDRLLNRLFALQHKVLIFSQWTKILDIMDYYFS 511

Query: 90  Q----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
           +             LD+    IQE+N+      +      + G G+NL    +  + +  
Sbjct: 512 EKGFEVCRIDGSVKLDERKKQIQEFNDENSQFRIFLLSTRAGGLGINLT-SADTCILYDS 570

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +   Q ++R       + G  + V VY L    +++  +L+R  +K  ++ +++
Sbjct: 571 DWNPQMDLQAMDRC-----HRIGQTKPVHVYRLTTAQSVEGRILKRAFSKLKLEHVVI 623


>gi|157818785|ref|NP_001100935.1| chromodomain helicase DNA binding protein 1 [Rattus norvegicus]
 gi|149047090|gb|EDL99810.1| chromodomain helicase DNA binding protein 1 (predicted) [Rattus
           norvegicus]
          Length = 1711

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRRQALDHFNAEGSEDFCFLLS 861

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 862 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 915

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 948


>gi|154299240|ref|XP_001550040.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
 gi|150857501|gb|EDN32693.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
          Length = 1433

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEV------ 51
            + Y +     + +  D +G    A   ++  ++  +L N   V+ + E            
Sbjct: 796  RLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFREVEDQMNPTGYINDS 855

Query: 52   ---HDEKIKALEVIIE--KANAAPIIVAYHFNS---------DLARLQKAFPQGRTL-DK 96
                  K + L+ I+   +A    +++ +   +         D   ++     G T  D 
Sbjct: 856  LWRSAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMGEFLDYRGIKFMRLDGTTKSDD 915

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 916  RSLLLKEFNAPNSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 969

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A +
Sbjct: 970  RAHRIGQKNEVRILRLISSNSVEEKILERAKFKLDMDGKVIQAGR 1014


>gi|84995999|ref|XP_952721.1| DNA repair helicase [Theileria annulata strain Ankara]
 gi|65303718|emb|CAI76095.1| DNA repair helicase, putative [Theileria annulata]
          Length = 965

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           +  +     K+     IIE  K     I++     + L  +     +    DKD      
Sbjct: 631 RRIESAGSSKLNVSLKIIEMWKKENKKILLFTQTTTMLNIIYDHLLE--IYDKDEILILF 688

Query: 99  ---------CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      I+ +  + K+ ++       G GLNL     I++ +   W+     Q  
Sbjct: 689 GKHTVSNRNKIIERFSTDDKVFIMILTTKVGGIGLNLTAATRIII-YDPDWNPMTDMQAK 747

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ER       + G K  V +Y LI  +TI+E + QR   K  +   +L+
Sbjct: 748 ERC-----YRIGQKNEVIIYRLITASTIEEKIYQRQLYKYYLSQQILS 790


>gi|156554795|ref|XP_001606060.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1053

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPC 99
              K++A+  ++         +I+   +   L  +            + F     +     
Sbjct: 884  SSKVRAVLDVVNSVLEKGEKVIIVSQWTKFLDIIASNLCLMEGAYFEMFTGKVAVKNRQE 943

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +   N+   K+ +L     + G GLNL  G N L+   L W+ +   Q ++R+      
Sbjct: 944  IVDRLNDSDNKLNVLLLSLTAGGVGLNL-VGANNLLLIDLHWNPQLETQAMDRL-----Y 997

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V +Y  + ++TI+E V +    K  I + +L+ 
Sbjct: 998  RFGQENNVHIYKFVCRDTIEEKVKKLQDMKLAIANNVLSG 1037


>gi|109131186|ref|XP_001092609.1| PREDICTED: DNA excision repair protein ERCC-6-like isoform 2
           [Macaca mulatta]
          Length = 1252

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDP 98
             K+  L  ++++        +V       L  +++      F   R        L+++ 
Sbjct: 459 SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTITHLLEREK 518

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 519 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 572

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K+ V VY LI   T++E + +R   K ++
Sbjct: 573 IGQKQNVVVYRLITCGTVEEKIYRRQVFKDSL 604


>gi|297710314|ref|XP_002831842.1| PREDICTED: DNA excision repair protein ERCC-6-like [Pongo abelii]
          Length = 1250

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRT-------LDKDP 98
             K+  L  ++++        +V       L  +++      F   R        L+++ 
Sbjct: 459 SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREK 518

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 519 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 572

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 573 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 604


>gi|167518399|ref|XP_001743540.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778639|gb|EDQ92254.1| predicted protein [Monosiga brevicollis MX1]
          Length = 546

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 20/164 (12%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQ 102
           K+K LE ++  ++A+ A +++   F + L  L+              G T   +    I 
Sbjct: 373 KLKVLEHLLAQKQADEARVLIFSQFTTMLDILEDFLTRRGYVFIRLDGSTPVSERQDLID 432

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++NE + I +      + G G+NL    N +V   + ++    +Q  +R       + G 
Sbjct: 433 QFNEDEEIFVFLLSTRAGGLGINLT-AANTVVLHDIDFNPYNDKQAEDRC-----HRVGQ 486

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              V +  LIA  T++  +  +   K  ++   +  LKK+  H+
Sbjct: 487 TDNVEIVRLIADETVEVDMQAKAEAKLQLERD-MTGLKKDDAHI 529


>gi|323451192|gb|EGB07070.1| hypothetical protein AURANDRAFT_28341 [Aureococcus anophagefferens]
          Length = 396

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 40/228 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEV 51
           + Y     +    L G    ++  +  +  ++  +  N             +   H    
Sbjct: 177 RYYRALYEKNVTMLAGGGRAVDGPSMMNLAMELRKCCNHPFLLKGVEFRELESSGHGVAE 236

Query: 52  HDEKIKA----------LEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D  + A          L  + ++     ++V   F   L  L+               G
Sbjct: 237 VDRLVDACGKLQFMDKILPKLFDEQ--RKVLVFSQFTMMLNVLEDYLRARAVVYGRIDGG 294

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T       I  +++   K+ L+     + G G+NL    + ++ +   W+ +   Q + 
Sbjct: 295 VTGRDRQRQIDAFSDAGSKMRLMLLSTRAGGVGINL-VAADTVIIYDSDWNPQNDVQAMA 353

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R       + G  + V VY L+   T +  +      K  +   +L+ 
Sbjct: 354 RC-----HRIGQTKKVTVYRLLTAKTYEAHMYDVATAKLDLDRAVLDG 396


>gi|302834898|ref|XP_002949011.1| hypothetical protein VOLCADRAFT_43161 [Volvox carteri f.
           nagariensis]
 gi|300265756|gb|EFJ49946.1| hypothetical protein VOLCADRAFT_43161 [Volvox carteri f.
           nagariensis]
          Length = 347

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 18/143 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKD-PCTIQEWNEGKIP--LL 112
            A    +++       L  +++             G T  +D P  +  +N    P  + 
Sbjct: 211 AATGHRVLLFSQMTRALDLVEEFLELRGLPYLRLDGSTRTEDRPQLLTAFNSPNSPYRVF 270

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++     W+    QQ  +R       + G  R+V V  L++
Sbjct: 271 LLSTRAGGMGLNLQ-SADTVIMLDSDWNPAMDQQAEDR-----AHRLGQTRSVLVLVLVS 324

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             T++E++L+R   K  + + ++
Sbjct: 325 CRTLEEVMLERAGAKRGLGEAVI 347


>gi|260827933|ref|XP_002608918.1| hypothetical protein BRAFLDRAFT_85517 [Branchiostoma floridae]
 gi|229294272|gb|EEN64928.1| hypothetical protein BRAFLDRAFT_85517 [Branchiostoma floridae]
          Length = 460

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIP-LLFA 114
           N    ++   +   L  + +   Q          G    +    ++++N   K P +L  
Sbjct: 305 NPVKSVIVSQWTKMLDVIGRHLEQAGYRYVVIKGGVPPRQRMEAVEQFNRNPKGPEVLLV 364

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  GG+ L    + W+     Q  +RI      + G K  V ++  + ++
Sbjct: 365 SLQAGGVGLNL-IGGSHLFLLDMHWNPALEDQASDRI-----YRVGQKNDVVIHKFVCKD 418

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T++E +      K  +   +L+ 
Sbjct: 419 TVEEKIKDLQNAKKNLAQGVLSG 441


>gi|257095431|ref|YP_003169072.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047955|gb|ACV37143.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 842

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 16/178 (8%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF--NSDL--ARLQKA---- 87
            N +   D +       DE I  L+ I     A  ++V   +    +L   RL       
Sbjct: 515 CNSSFLLDHQTDDGFKADELIALLDDIFSDPQAK-VVVFSQWLRTHELIIRRLAGRDWQH 573

Query: 88  --FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             F  G   DK    +  +N      +F    + G GLNLQ+   ++V   L W+    +
Sbjct: 574 VLFHGGVPGDKRGALVDRFNNDPACRVFLSTDAGGVGLNLQHAAAVVVNMDLPWNPAVLE 633

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           Q I R+      + G  R V V   +A+ TI+E +L  L  K ++   +L+    + +
Sbjct: 634 QRIGRV-----HRLGQTRGVQVINFVARGTIEEGMLSVLAFKQSLFAGVLDGGDSDIV 686


>gi|121712768|ref|XP_001273995.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119402148|gb|EAW12569.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 953

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 24/200 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+  C L   +I+  N+A+       L   A   D+          KI+AL  I+ 
Sbjct: 737 QVIERQHKCPLCRADIK--NTATLVAPAAALGESA--DDDIVADPNNPSSKIEALIKILT 792

Query: 65  K---ANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKIP 110
               A     +V   + S L      LQ+       +D       +D  T +  N+    
Sbjct: 793 AQGQALGTKTVVFSQWTSFLNLVEPHLQRHRISFVRIDGSMSSTARDSSTYKFSNDPGCK 852

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  + C  GLNL    N  +    WW      Q ++R+      + G KR   V+ L
Sbjct: 853 VLLASLSVCSVGLNL-VAANQAILADSWWAPTIEDQAVDRV-----YRLGQKRETTVWRL 906

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + +NTI++ VL+   TK  +
Sbjct: 907 VMENTIEDRVLEIQDTKRKL 926


>gi|254586199|ref|XP_002498667.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
 gi|238941561|emb|CAR29734.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
          Length = 1651

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
            K++ LE ++ K  A    +++ +     +           ++     G T  D+    + 
Sbjct: 1039 KLELLERVLPKLKATGHRVLIFFQMTQIMDIMEDFLRYIDIKYLRLDGHTKSDERSELLS 1098

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+ +           + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1099 LFNDEEAGYFCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1152

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI QN+++E++L++   K  I   ++ A K
Sbjct: 1153 QKNEVKILRLITQNSVEEVILEKAHKKLDIDGKVIQAGK 1191


>gi|114658987|ref|XP_001170658.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 3
           [Pan troglodytes]
          Length = 1603

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|15240074|ref|NP_201476.1| CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase [Arabidopsis
           thaliana]
 gi|75338558|sp|Q9XFH4|DDM1_ARATH RecName: Full=ATP-dependent DNA helicase DDM1; AltName:
           Full=Protein CHROMATIN REMODELING 1; Short=CHR01;
           AltName: Full=Protein DECREASED DNA METHYLATION 1;
           Short=AtDDM1; AltName: Full=Protein SOMNIFEROUS 1;
           AltName: Full=SWI/SNF2-related matrix-associated
           actin-dependent regulator of chromatin DDM1
 gi|4726079|gb|AAD28303.1|AF143940_1 SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|8843733|dbj|BAA97281.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|20466344|gb|AAM20489.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|25084090|gb|AAN72172.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|332010876|gb|AED98259.1| chromatin remodeling 1 [Arabidopsis thaliana]
          Length = 764

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLF 113
           AN   +++   +   L  +   F +             LD+    I+++++ K    +  
Sbjct: 538 ANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFL 597

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 598 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLSTA 651

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +I+  VL+R  +K  ++ +++
Sbjct: 652 QSIETRVLKRAYSKLKLEHVVI 673


>gi|261326898|emb|CBH09871.1| transcription activator, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 948

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------- 85
            A     ++        K+  L+ ++ +   N    ++  +F   L  LQ          
Sbjct: 506 SACGISLDERSIIAPSGKMIELDRMLREFHMNGHRCLIFSNFTCVLDLLQGLCILRDYSH 565

Query: 86  KAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +         +   ++  +N    K+ +      S G G+ L  G +I++ F        
Sbjct: 566 ERIDGSAQRVERELSMARFNGPASKVFVFLISTMSGGVGITLT-GADIVILFD-----AN 619

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               ++R    R  + G  R V V+ L  + T++E +      + ++ + +++ 
Sbjct: 620 FNPQMDRQAADRAHRIGQTRTVRVFRLCCKETVEERIQDIALRRLSLGEFVVDG 673


>gi|156046805|ref|XP_001589764.1| hypothetical protein SS1G_09486 [Sclerotinia sclerotiorum 1980]
 gi|154693881|gb|EDN93619.1| hypothetical protein SS1G_09486 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1054

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLD 95
            +E +  +     KI  L  I+ ++A     IV   F S L  +     QK F   R   
Sbjct: 805 DEEAELSRVAASTKITHLMKILGKEAAQHKFIVFSQFTSMLDLVEPFLRQKGFKYTRYDG 864

Query: 96  KDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N+    +L         GLNL     +++    +W+    +Q I+
Sbjct: 865 GMKNDLREASLDRLRNDENCRVLLCSLKCGSLGLNLTAATRVVIL-EPFWNPFVEEQAID 923

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      +   K  V VY +  ++T++E +L     K  + +  + 
Sbjct: 924 RV-----HRLTQKIDVVVYKITIKDTVEERILLLQEKKRELANQTIE 965


>gi|72386767|ref|XP_843808.1| transcription activator [Trypanosoma brucei TREU927]
 gi|62359823|gb|AAX80252.1| transcription activator, putative [Trypanosoma brucei]
 gi|70800340|gb|AAZ10249.1| transcription activator, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 948

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------- 85
            A     ++        K+  L+ ++ +   N    ++  +F   L  LQ          
Sbjct: 506 SACGISLDERSIIAPSGKMIELDRMLREFHMNGHRCLIFSNFTCVLDLLQGLCILRDYSH 565

Query: 86  KAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +         +   ++  +N    K+ +      S G G+ L  G +I++ F        
Sbjct: 566 ERIDGSAQRVERELSMARFNGPASKVFVFLISTMSGGVGITLT-GADIVILFD-----AN 619

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               ++R    R  + G  R V V+ L  + T++E +      + ++ + +++ 
Sbjct: 620 FNPQMDRQAADRAHRIGQTRTVRVFRLCCKETVEERIQDIALRRLSLGEFVVDG 673


>gi|328786333|ref|XP_001120496.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Apis
           mellifera]
          Length = 1667

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 82/224 (36%), Gaps = 42/224 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+  ++     ++G  +   N   +  KC    N A      ++ ++ ++E    L+ 
Sbjct: 602 KNYNALRKG----VKGSTMTFLNIVIELKKC---CNHAFLTKPTENERKDNNE--DYLQQ 652

Query: 62  IIEKAN---------------AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK----- 96
           +I  +                   +++       L  L     +K FP  R         
Sbjct: 653 LIRGSGKLVLLDKLLVRLRETGHRVLIFSQMVRMLDILGEYLQKKHFPFQRLDGSIKGEL 712

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 713 RKQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 767

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 768 -AHRIGQKNQVNIYRLVTKNSVEEEIVERAKQKMVLDHLVIQRM 810


>gi|322711118|gb|EFZ02692.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1235

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 44   EEKHWKEVHDEKI-KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------- 91
              K  + +   KI +  +++  +A     IV   F S L  ++    +            
Sbjct: 1012 SGKQTQVLASAKIREVTKILHAEAEEHKFIVFSQFTSMLDLVEPFLDKDGFEYARYDGSM 1071

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++    +   +    +L         GLNL      ++    +W+    +Q I+R+
Sbjct: 1072 KNDDREESLRRLREDQSTRVLLCSLKCGSLGLNLT-AATRVIIVEPFWNPFVEEQAIDRV 1130

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
                  +      V VY L   +T++E ++     K  + +  +    KKE + +
Sbjct: 1131 -----HRLTQTVDVVVYKLTVADTVEERIIDLQNKKRELAEQTIEGGAKKEAMKL 1180


>gi|171694309|ref|XP_001912079.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947103|emb|CAP73908.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1203

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K K L+ +++   +N   ++V  H    L  L+  F              + ++    + 
Sbjct: 740 KWKVLKKLLQFWHSNGDKVLVFSHSVRLLRILRHLFNNTNYNVSFLDGSLSYEERQNVVD 799

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N +    +      + G GLN+    N +V F   W+     Q        R  + G 
Sbjct: 800 EFNTDPAQFVFLISTKAGGVGLNIT-SANKVVIFDPHWNPAYDLQA-----QDRAYRIGQ 853

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R V V+ LI+  TI+E+V  R   K    +
Sbjct: 854 IRDVDVFRLISAGTIEEIVYARQIYKQQQAN 884


>gi|159126737|gb|EDP51853.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus fumigatus A1163]
          Length = 986

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 24/162 (14%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCT 100
             K   L+ +++        +IV  +F+            L    +AF   R   +    
Sbjct: 527 SGKFLVLKKLLQYYVTTETKVIVFSNFDQCLNLCEDLVMMLQGSNRAFEYARLDGRTTGP 586

Query: 101 IQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++       N+ +  +      + G GLNL    +++VF    W+ +  +Q   R+   
Sbjct: 587 WRKVMVHLFQNDPRYKVFLVSIRAGGEGLNLT-SSSVVVFLDEDWNPQVMRQAEARV--- 642

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R V +Y L +  T++E + +RL  K+ + D +  
Sbjct: 643 --HRIGQTRPVVIYKLRSAGTVEEQMSRRLVKKAYVADRVTE 682


>gi|70997575|ref|XP_753531.1| nucleosome remodeling complex ATPase subunit (Snf2h) [Aspergillus
           fumigatus Af293]
 gi|66851167|gb|EAL91493.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus fumigatus Af293]
          Length = 986

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 24/162 (14%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCT 100
             K   L+ +++        +IV  +F+            L    +AF   R   +    
Sbjct: 527 SGKFLVLKKLLQYYVTTETKVIVFSNFDQCLNLCEDLVMMLQGSNRAFEYARLDGRTTGP 586

Query: 101 IQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++       N+ +  +      + G GLNL    +++VF    W+ +  +Q   R+   
Sbjct: 587 WRKVMVHLFQNDPRYKVFLVSIRAGGEGLNLT-SSSVVVFLDEDWNPQVMRQAEARV--- 642

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R V +Y L +  T++E + +RL  K+ + D +  
Sbjct: 643 --HRIGQTRPVVIYKLRSAGTVEEQMSRRLVKKAYVADRVTE 682


>gi|125550816|gb|EAY96525.1| hypothetical protein OsI_18430 [Oryza sativa Indica Group]
          Length = 1088

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +++  +  N    + E      +        K + L+ ++ K       +++       
Sbjct: 676 LSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFELLDRLLPKLQRAGHRVLLFSQMTKL 735

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L         +     G T  ++    + ++N+      L      + G GLNLQ  
Sbjct: 736 LDILEVYLQIYQFKYMRLDGSTKTEERGRLLADFNKKDSEYFLFLLSTRAGGLGLNLQT- 794

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K  V V+ L++  +I+E +L R + K 
Sbjct: 795 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKM 849

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 850 GIDAKVIQA 858


>gi|296424248|ref|XP_002841661.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637907|emb|CAZ85852.1| unnamed protein product [Tuber melanosporum]
          Length = 1022

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGRTL------- 94
            +        K++ L   + +           V   F + L  ++K   + R         
Sbjct: 842  RRINSRSSAKVEMLIEKLSETERSCPERKSCVFSQFTTFLDIIEKELQRRRIKFLRFDGS 901

Query: 95   ---DKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                K    +  +   + P +L     + G GLNL    + +     WW      Q I+R
Sbjct: 902  MSQQKRAEVVSTFKMDQGPNILLLSLRAGGVGLNLTT-ASQVFMMDPWWSFAVEAQAIDR 960

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLL 194
            +      + G    V VY  + + T++E ++      K  I   L
Sbjct: 961  V-----HRMGQTSEVMVYRFVVEGTVEERIVHTIQARKKFIASSL 1000


>gi|115633814|ref|XP_780898.2| PREDICTED: similar to excision repair protein, partial
           [Strongylocentrotus purpuratus]
          Length = 973

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQE 103
           K+  +E +++  K     +++       L  ++                T+      I +
Sbjct: 352 KMIVVESLLKLWKEQNHRVLLFSQSKQMLDIMEDFVKDRYSYMRMDGTTTISSRQPLITK 411

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N + +I L        G G+NL  G N ++ +   W+     Q  ER       + G  
Sbjct: 412 FNSDPRIFLFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERSW-----RIGQT 465

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V +Y L+   +I+E +  R   K+ + + +L
Sbjct: 466 KQVTIYRLLTAGSIEEKIYHRQIFKTFLTNRVL 498


>gi|50549971|ref|XP_502458.1| YALI0D05775p [Yarrowia lipolytica]
 gi|49648326|emb|CAG80646.1| YALI0D05775p [Yarrowia lipolytica]
          Length = 990

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLAN----------GAVYYDE 44
             Q + Y  L  ++I+A N             +  ++  +  N          G  Y  +
Sbjct: 336 DMQVQWYQKLLEKDIDAVNGQLGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 395

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++  +  + +++    +  L  L+          +   G T
Sbjct: 396 EHLV--FNCGKMVMLDKLLKRLKSQGSRVLIFSQMSRMLDILEDYCSFRDYEYSRIDGST 453

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 454 AHEDRIAAIDEYNAEGSEKFVFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR 512

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V+V+  + +N ++E VL+R   K  +  L++   + +
Sbjct: 513 -----AHRIGQTKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVIQQGRTQ 558


>gi|281208788|gb|EFA82963.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 428

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWN 105
           K+  L    E+     ++V       L  L++             G T   D   I +  
Sbjct: 255 KLNELLD-AERKKGNKVLVFSMMTRVLDILEEVLSMQDISFCRLDGTTPVNDRQDIIDLF 313

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            G   IP++     + G G+NL    N+++F+ + ++ +     +ER    R  + G ++
Sbjct: 314 SGDKTIPVMLLSTLAGGLGINLTC-ANVVIFYDISFNPQ-----VERQAEDRAHRLGQEK 367

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+++ +I  +++D  +L+   TK  + D +L 
Sbjct: 368 TVYIHRIIVDDSVDNNILEMSTTKRELNDSMLE 400


>gi|224049423|ref|XP_002191909.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1108

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 49   KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDK 96
            + +   K +ALE I+   K     +++   F   L  L         +     G+T + +
Sbjct: 931  QILDSGKFRALERILSNLKEKGDRVVLFSQFTMMLDILEVLLKHWQHRYLRLDGKTQISE 990

Query: 97   DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I E+N    I +      + G G+NL    NI++   +  +    +Q  +R     
Sbjct: 991  RIHLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANIVILHDIDCNPYNDKQAEDRC---- 1045

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V V  LI++ TI+E +L+  + K  ++  +  A
Sbjct: 1046 -HRVGQTREVQVIKLISKGTIEETMLKISQQKLKLEQDMTAA 1086


>gi|221488451|gb|EEE26665.1| chromatin remodelling complex protein SNF2L, putative [Toxoplasma
           gondii GT1]
          Length = 1556

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD---------EEKHW 48
           K Q++LY D+  +N+E  N+ S          +QL    N    +D         E +H 
Sbjct: 441 KLQKKLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHM 500

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            E    K+  L+ ++ +  A  + +++       L  +               G T   +
Sbjct: 501 VEAA-GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTE 559

Query: 98  PCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N    K  L      + G G+NL    +I++ F   ++ +   Q ++R    
Sbjct: 560 RQERIDEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQMDLQAMDR---- 614

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  +  +T++  +++R   K  +  L++ 
Sbjct: 615 -AHRIGQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQ 655


>gi|222630170|gb|EEE62302.1| hypothetical protein OsJ_17090 [Oryza sativa Japonica Group]
          Length = 1087

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +++  +  N    + E      +        K + L+ ++ K       +++       
Sbjct: 675 LSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFELLDRLLPKLQRAGHRVLLFSQMTKL 734

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L         +     G T  ++    + ++N+      L      + G GLNLQ  
Sbjct: 735 LDILEVYLQMYQFKYMRLDGSTKTEERGRLLADFNKKDSEYFLFLLSTRAGGLGLNLQT- 793

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K  V V+ L++  +I+E +L R + K 
Sbjct: 794 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKM 848

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 849 GIDAKVIQA 857


>gi|195498627|ref|XP_002096604.1| GE24955 [Drosophila yakuba]
 gi|194182705|gb|EDW96316.1| GE24955 [Drosophila yakuba]
          Length = 1055

 Score = 91.2 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               KI  +  I++ +    +    IV   + S L  L++                 +   
Sbjct: 882  PSSKINMVIQILKTSILNSSDDKAIVVSQWTSVLDILREHLSNDGVTTLSLNGTIPVKNR 941

Query: 98   PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI    
Sbjct: 942  QDIVNQFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI---- 996

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 997  -YRVGQKKNVTIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 1039


>gi|321265109|ref|XP_003197271.1| DEAD/DEAH box helicase involved in nucleotide-excision repair
           [Cryptococcus gattii WM276]
 gi|317463750|gb|ADV25484.1| DEAD/DEAH box helicase involved in nucleotide-excision repair,
           putative [Cryptococcus gattii WM276]
          Length = 804

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 48/229 (20%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLA------NGAVYYDEEKHWKEV------- 51
            K + +   DL G             K  Q+       N A Y D  ++  +        
Sbjct: 559 EKDEADELADLLGG------LGVAKGKTCQMCFMKLDDNSAQYCDACENIAQRVRRQSGA 612

Query: 52  -------HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
                     KI+ L  ++ +      N    IV   F S L  ++    +         
Sbjct: 613 SEDALPPTSAKIRMLLKLLSEIDEKSGNKEKTIVFSQFTSFLDLVEPYLKKYSIKYVRYD 672

Query: 95  ------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +     +  ++ K  ++     +   GLNL    N ++   LWW+     Q  
Sbjct: 673 GSMRNDHRQESLAKIRDDSKTRVILISFKAGSTGLNLTC-CNNVILMDLWWNPALEDQAF 731

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G K  V ++ L  + T+++ +L    +K  + +  L+ 
Sbjct: 732 DR-----AHRLGQKLDVNIWKLTIEETVEDRILILQNSKRDLANAALSG 775


>gi|239985588|ref|NP_031716.2| chromodomain-helicase-DNA-binding protein 1 [Mus musculus]
 gi|109732363|gb|AAI15823.1| Chromodomain helicase DNA binding protein 1 [Mus musculus]
 gi|148688507|gb|EDL20454.1| chromodomain helicase DNA binding protein 1 [Mus musculus]
          Length = 1711

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 861

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 862 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 915

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 948


>gi|281344850|gb|EFB20434.1| hypothetical protein PANDA_017908 [Ailuropoda melanoleuca]
          Length = 1133

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 769 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 828

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 829 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 882

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 883 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 923


>gi|239992059|ref|ZP_04712723.1| hypothetical protein SrosN1_32479 [Streptomyces roseosporus NRRL
           11379]
          Length = 743

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +   E+ EA+  A  + + +++   A       +       K++ L  ++ +A  N   +
Sbjct: 525 EFGAEDREAYGEAVASGRFMRMRRAA-------YAVPKTSAKLERLRELVGEARDNGLKV 577

Query: 72  IVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
           +V  +F   LA +  A                +    +  ++      +L +   + G G
Sbjct: 578 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 637

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ +++
Sbjct: 638 LNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRTVQVHRLLATDSVDQRLVE 691

Query: 183 RLRTKSTIQDL 193
            L  K  + D 
Sbjct: 692 LLARKDRLFDA 702


>gi|225678325|gb|EEH16609.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb03]
          Length = 1391

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGA----VYYDEEKHWKEVHD- 53
           K Y +        +             +   +QL    N         DE    +  +D 
Sbjct: 750 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 809

Query: 54  -----EKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +              L  ++     G T   D
Sbjct: 810 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 869

Query: 98  PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + +E+N    +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 870 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 923

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 924 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 968


>gi|156348349|ref|XP_001621816.1| hypothetical protein NEMVEDRAFT_v1g1681 [Nematostella vectensis]
 gi|156208092|gb|EDO29716.1| predicted protein [Nematostella vectensis]
          Length = 147

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 68  AAPIIVAYHFNS---------DLARLQKAFPQGRTL--DKDPCTIQEWNEGKIPLLFAHP 116
              +++   + S         D      +   G T   D++        +    L F   
Sbjct: 20  KQKVLIFSSYTSHLKIYTDWCDKNNTPYSLLTGSTKIADRESEVANFQKDDNKLLFFISL 79

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++    WW+     Q I R       + G +  V V   IA++TI
Sbjct: 80  KAGGTGLNLTK-ASYVILLDPWWNPFAELQAIGR-----AHRIGQENQVNVVRFIAKDTI 133

Query: 177 DELVLQRLRTKSTI 190
           +E + Q  ++K  I
Sbjct: 134 EEKISQLQQSKKEI 147


>gi|302510453|ref|XP_003017178.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
 gi|291180749|gb|EFE36533.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
          Length = 1405

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
            K Y +        +             +   +QL    N    +D               
Sbjct: 831  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 890

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                  K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 891  IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 950

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + + +NE   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 951  RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 1004

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 1005 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1049


>gi|145484966|ref|XP_001428492.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395578|emb|CAK61094.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1405

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 18/141 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKI--PLLFA 114
               +++   F + LA L++     +   +              I  +N+ K    +   
Sbjct: 794 EDKKMLIFSQFTNMLALLEEYLQFNQIKYEKITGDIKQIDRQNAIDRFNDQKKGRQVFLL 853

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL     I+V F   W+ +   Q   R       + G  + V VY  I +N
Sbjct: 854 STKAGGQGINLT-AAEIVVIFDSDWNPQNDIQATAR-----AHRIGQDKQVTVYRFITKN 907

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T +  + +R   K  +   + 
Sbjct: 908 TYEAKMFERAFAKLGLDQAIF 928


>gi|328722605|ref|XP_001946846.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Acyrthosiphon pisum]
          Length = 1670

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------DEEKHWKEVH 52
           K Y+  ++      +G +    N   +  KC    N A+           D+        
Sbjct: 646 KNYNALRKGS----KGSSTTFLNIMIELKKC---CNHALLTKPQENENTADDNLQGLLRG 698

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCT 100
             K+  L+ ++ +       +++       L  L +             G    D     
Sbjct: 699 SGKLMLLDKLLVRLRETGHRVLIFSQMVRMLDILAEYLSYRHLPFQRLDGSIKGDIRRQA 758

Query: 101 IQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N EG           + G G+NL    + ++ F   W+ +   Q   R       +
Sbjct: 759 LEHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHR 812

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 813 IGQKNQVNIYRLVTKGSVEEDIVERAKQKMVLDHLVIQRM 852


>gi|224009183|ref|XP_002293550.1| hypothetical protein THAPSDRAFT_263996 [Thalassiosira pseudonana
           CCMP1335]
 gi|220970950|gb|EED89286.1| hypothetical protein THAPSDRAFT_263996 [Thalassiosira pseudonana
           CCMP1335]
          Length = 1000

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 27/210 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F      +    +I+A  +  K +  LQ+        ++        + +  +E 
Sbjct: 607 KWYKSFVDR--AEKSEMDIKAIENGGKIIVLLQIIAHCDSIGDKVVVFSQCLKTLSYVEE 664

Query: 62  IIEKANA---APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--------- 109
           I++  N     P +  Y+      RL   + +G+   +   ++     G +         
Sbjct: 665 ILQSPNWGGFQPFLPDYNGK---QRL-GGWEKGKEYLRIDGSVDARERGDLVDTFNTEAI 720

Query: 110 ---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    N +V     W+     Q + R       + G  +  F
Sbjct: 721 AHSKVFLLSTQAGGLGINL-VAANRVVLLDSHWNPAISDQAVHRC-----YRFGQTKPTF 774

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y L+A+ +++E +  R   KS++ DL+++
Sbjct: 775 CYRLLAEGSMEEKIYSRAAAKSSLSDLVID 804


>gi|158259161|dbj|BAF85539.1| unnamed protein product [Homo sapiens]
          Length = 1049

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|35505451|gb|AAH57567.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
 gi|38571574|gb|AAH62966.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
              K+  L+ ++    +    +++       L  LQ              G    ++   
Sbjct: 339 ASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHL 398

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + 
Sbjct: 399 AIKNFGNQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRI 452

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 453 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|297843184|ref|XP_002889473.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335315|gb|EFH65732.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 876

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ALE ++    +    I++  +    L  L+K                  +     + 
Sbjct: 530 KMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVD 589

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N      +      + G GLNL    N +V F   W+     Q        R  + G 
Sbjct: 590 DFNASPSKQVFLISTKAGGLGLNL-VSANRVVIFDPNWNPSHDLQA-----QDRSFRYGQ 643

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           KR V V+ L++  +++ELV  R   K  + ++ + A K ET +
Sbjct: 644 KRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV-AGKMETRY 685


>gi|4204312|gb|AAD10693.1| Hypothetical protein [Arabidopsis thaliana]
          Length = 874

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ALE ++    +    I++  +    L  L+K                  +     + 
Sbjct: 541 KMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVD 600

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N      +      + G GLNL    N +V F   W+     Q        R  + G 
Sbjct: 601 DFNASPSKQVFLISTKAGGLGLNL-VSANRVVIFDPNWNPSHDLQA-----QDRSFRYGQ 654

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           KR V V+ L++  +++ELV  R   K  + ++ + A K ET +
Sbjct: 655 KRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV-AGKMETRY 696


>gi|67606806|ref|XP_666775.1| chromatin remodelling complex protein SNF2L [Cryptosporidium
           hominis TU502]
 gi|54657830|gb|EAL36543.1| chromatin remodelling complex protein SNF2L [Cryptosporidium
           hominis]
          Length = 1292

 Score = 91.2 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYD---------EEKHW 48
           K Q+++Y +L   N++  NSAS          ++  +  N    +D         E  H 
Sbjct: 451 KLQKKIYSELLTRNLDVLNSASSNKTQMLNLLMQLRKTCNHPYLFDGVEPGPPYVEGFHM 510

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT- 100
            E    K+  L  ++ K  +  + +++       L  +        +P  R     P   
Sbjct: 511 VE-ASGKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWSGYPYCRIDGSTPGIE 569

Query: 101 ----IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+   +  +      + G G+NL    ++++ F   ++ +   Q ++R    
Sbjct: 570 RQERIDIFNKEGSEKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQMDLQAMDR---- 624

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  + + T++E +++R   K  +  L++ 
Sbjct: 625 -AHRIGQKKPVTVYRFVTEKTVEERIVERAAKKLKLDSLIIQ 665


>gi|331232855|ref|XP_003329089.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309308079|gb|EFP84670.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 2115

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
              +++       L  ++                       K    +Q +N +  I  L  
Sbjct: 1901 HRVLIFCQMKQMLDIIEHDLFKLQMPNVTYMRMDGSTDATKRHDVVQTFNSDPSIDCLLL 1960

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI + 
Sbjct: 1961 TTHVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRLGQKKVVNVYRLITRA 2014

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   R K  I   ++N
Sbjct: 2015 TLEEKIMGLQRFKMNIATSIVN 2036


>gi|291449046|ref|ZP_06588436.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351993|gb|EFE78897.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 703

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +   E+ EA+  A  + + +++   A       +       K++ L  ++ +A  N   +
Sbjct: 485 EFGAEDREAYGEAVASGRFMRMRRAA-------YAVPKTSAKLERLRELVGEARDNGLKV 537

Query: 72  IVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
           +V  +F   LA +  A                +    +  ++      +L +   + G G
Sbjct: 538 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 597

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ +++
Sbjct: 598 LNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRTVQVHRLLATDSVDQRLVE 651

Query: 183 RLRTKSTIQDL 193
            L  K  + D 
Sbjct: 652 LLARKDRLFDA 662


>gi|320582398|gb|EFW96615.1| DNA helicase [Pichia angusta DL-1]
          Length = 1219

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 35/226 (15%)

Query: 3   QYHKF--QRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEVHDE---- 54
            Y +      L+  +  +            K +QL       Y  EE             
Sbjct: 700 LYKQMLNHNALFVGVGTQGATKTGLRGLNNKIMQLRKVCNHPYVFEEVEDIVNPSRLTTD 759

Query: 55  -------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDK 96
                  K + L+ ++ K  A+   +++ +          D  R   ++     G T   
Sbjct: 760 LIWRSSGKFELLDRVLPKFKASGHKVLIFFQMTQVMDIMEDYLRFRDMKYMRLDGSTKAD 819

Query: 97  DPCT-IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    ++++N              + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 820 DRQDMLKDFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 873

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 874 DRAHRIGQKNEVRILRLITEDSVEEVILERAHQKLDIDGKVIQAGK 919


>gi|310792871|gb|EFQ28332.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1119

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A+             +QL               G  Y  +
Sbjct: 419 DMQVKWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 478

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++ +     + +++    +  L  L+               G 
Sbjct: 479 EHLV--YNAGKMVVLDKLLARMQKQGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGT 536

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+   +  +      + G G+NL    +I+V +   W+ +   Q ++R
Sbjct: 537 AHEDRIAAIDEYNKPGSEKFIFLLTTRAGGLGINLT-SADIVVLYDSDWNPQADLQAMDR 595

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 596 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 636


>gi|307186121|gb|EFN71846.1| Transcription termination factor 2 [Camponotus floridanus]
          Length = 830

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 18/167 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYH------FNSDLARLQKA----FPQGRTL 94
           +          +  ++ I++K+    IIV+          S L+ ++ A    F     +
Sbjct: 652 DDRISSKMRTLLNMVKEILQKSEDKLIIVSQWTALLNVIASHLSSIKGATFSKFTGNVAI 711

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  +N       +L     + G GLNL  G N L+ F + W+ +   Q  +RI 
Sbjct: 712 KDRQSIIDSFNSRNSDPRILLLSLTAGGVGLNL-VGANHLLLFDIHWNPQLETQAQDRI- 769

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G K+ V VY  I  NTI+E +      K  I   +L+  K
Sbjct: 770 ----YRFGQKKNVHVYKFICLNTIEERIKGLQDRKLEIASNVLSGDK 812


>gi|187469489|gb|AAI66868.1| Smarca5 protein [Rattus norvegicus]
          Length = 584

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP 98
             +  K+  L+ ++ K     + +++       L  L+              G+T   + 
Sbjct: 11  VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 70

Query: 99  CT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +NE      +      + G G+NL    ++++ +   W+ +   Q ++R     
Sbjct: 71  QDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQAMDR----- 124

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 125 AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 165


>gi|149636559|ref|XP_001513135.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Ornithorhynchus anatinus]
          Length = 1807

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 805 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 864

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 865 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 918

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 919 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 951


>gi|218511830|sp|Q6BIP2|RAD5_DEBHA RecName: Full=DNA repair protein RAD5
          Length = 1190

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------- 89
            +Y  +           I  L+++ E++    ++V   F+S L  ++              
Sbjct: 1003 LYLYDPTKTSSKIQCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVY 1062

Query: 90   --QGRT-LDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               GR  +++    ++ ++    E K+ +L     + G GLNL    +       WW   
Sbjct: 1063 KFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1121

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+R+      + G    V V   I  ++I+  +L+    K  I + +
Sbjct: 1122 VEDQAIDRL-----HRIGQNSNVKVTRFIMADSIETKMLKIQERKKQIGEAV 1168


>gi|195496271|ref|XP_002095622.1| GE19602 [Drosophila yakuba]
 gi|194181723|gb|EDW95334.1| GE19602 [Drosophila yakuba]
          Length = 899

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 20/153 (13%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPC 99
              K+  L  ++++  A+   +++       L  L+        Q   LD          
Sbjct: 585 ASGKLDLLSKMLKQLKADHHRVLIFSQMTKMLNILEDFLEGEGYQYERLDGNIRGDLRQE 644

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N  K    +      + G G+NL    + ++ F   W+     Q       +R  
Sbjct: 645 AIDRFNAPKAEQFVFLLSTRAGGLGINL-ATADTVILFDSDWNPHNDVQA-----FSRAH 698

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G  + V +Y  +  N+++E ++Q ++ K  +
Sbjct: 699 RMGQTKKVMIYRFVTHNSVEERIMQVVKHKMML 731


>gi|242038313|ref|XP_002466551.1| hypothetical protein SORBIDRAFT_01g009790 [Sorghum bicolor]
 gi|241920405|gb|EER93549.1| hypothetical protein SORBIDRAFT_01g009790 [Sorghum bicolor]
          Length = 836

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  L+                  L++    I E+N     + +  
Sbjct: 610 ARKHKVLIFSQWTKVLDILEYYLDSKGLGVCRIDGSVNLEERRRQIAEFNDVNSSLNVFI 669

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 670 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 723

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++E +++R   K  ++ +++
Sbjct: 724 HSVEERIIKRAFGKLKLEHVVI 745


>gi|239945590|ref|ZP_04697527.1| hypothetical protein SrosN15_31682 [Streptomyces roseosporus NRRL
           15998]
          Length = 720

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +   E+ EA+  A  + + +++   A       +       K++ L  ++ +A  N   +
Sbjct: 502 EFGAEDREAYGEAVASGRFMRMRRAA-------YAVPKTSAKLERLRELVGEARDNGLKV 554

Query: 72  IVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
           +V  +F   LA +  A                +    +  ++      +L +   + G G
Sbjct: 555 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 614

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ +++
Sbjct: 615 LNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRTVQVHRLLATDSVDQRLVE 668

Query: 183 RLRTKSTIQDL 193
            L  K  + D 
Sbjct: 669 LLARKDRLFDA 679


>gi|114658989|ref|XP_001170614.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Pan troglodytes]
          Length = 1531

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 789 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 848

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 849 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 902

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|50310529|ref|XP_455284.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644420|emb|CAG97992.1| KLLA0F04521p [Kluyveromyces lactis]
          Length = 1344

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQL---ANGAVYYDEEKHWKEVH---- 52
           + Y +  +     +      A  +  K    K +QL    N    +DE ++         
Sbjct: 767 QLYEQMLKHNAFFIGAGTEGATKAGIKGLNNKVMQLRKICNHPFVFDEVENVINPTRENS 826

Query: 53  ------DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
                   K + L+ ++ K  A+   +++ +          D  R   L+     G T  
Sbjct: 827 SILYRVSGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMRDLKYMRLDGGTKA 886

Query: 96  KDPC-TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 887 EDRTGMLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 940

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 941 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 987


>gi|255072471|ref|XP_002499910.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515172|gb|ACO61168.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1201

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 20/149 (13%)

Query: 56   IKALEVI-IEKANAAP---IIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            +  L  I  E     P    +V   F   L  +                 + L +    +
Sbjct: 986  LDELAAIRAEARPGTPPTQCVVFSQFTKFLDIIGPKIEDAGHAVLRLDGTQRLSQRARVV 1045

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             ++  G+  +L     +   GLNL    + ++    WW+     Q I+R       + G 
Sbjct: 1046 AKFRRGEAGVLLVSLKAASLGLNLNC-ASRVILTDPWWNAAIEDQAIDRC-----HRIGQ 1099

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             R V V  L+ ++T++  +      K  I
Sbjct: 1100 TREVKVTRLLIRDTVENRIRDLQERKKAI 1128


>gi|154277776|ref|XP_001539721.1| hypothetical protein HCAG_05188 [Ajellomyces capsulatus NAm1]
 gi|150413306|gb|EDN08689.1| hypothetical protein HCAG_05188 [Ajellomyces capsulatus NAm1]
          Length = 1162

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 26/160 (16%)

Query: 51   VHDEKIKALEVI-------IEKANAAPI--IVAYHFNSDLARLQKAFPQ----------- 90
            V   KI+    I       I + +  P   IV   F S L  LQ    +           
Sbjct: 1003 VTSAKIEKTMEILRDIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGS 1062

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +   ++   ++  +     ++     +   GLNL    + ++    +W+    +Q I+R
Sbjct: 1063 MQPSHRNEAVLRFSDSQNHTIMLISLKAGNSGLNL-VAASQVIILDPFWNPYLEEQAIDR 1121

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   + G  R V V+ ++   T+++ +L+    K  +
Sbjct: 1122 -----AHRIGQMRPVMVHRILVHKTVEDRILELQDRKRAL 1156


>gi|50289267|ref|XP_447064.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526373|emb|CAG59997.1| unnamed protein product [Candida glabrata]
          Length = 1126

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGR 92
            K+ + ++  K+ AL+ +++         +++   F   L  L+K                
Sbjct: 941  KNDEWMNSGKVDALKKLLDDIINKKREKVLIFTLFTQVLDILEKVLSTLNYKFLRLDGST 1000

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             ++     I ++ +   IP+      + G G+NL    ++++F       +      +R 
Sbjct: 1001 QVNDRQTMIDKFYDDNTIPIFMLSTRAGGFGINLVCANHVIIFD------QSFNPHDDRQ 1054

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  + V V  LI +++I+E + Q  +TK  +   +
Sbjct: 1055 AADRAHRVGQTKEVTVTTLITKDSIEEKIFQLAKTKLALDSQV 1097


>gi|327300573|ref|XP_003234979.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
 gi|326462331|gb|EGD87784.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
          Length = 1352

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
           K Y +        +             +   +QL    N    +D               
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 897

Query: 98  PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + + +NE   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 898 RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|258573727|ref|XP_002541045.1| chromatin remodelling complex ATPase chain ISW1 [Uncinocarpus
           reesii 1704]
 gi|237901311|gb|EEP75712.1| chromatin remodelling complex ATPase chain ISW1 [Uncinocarpus
           reesii 1704]
          Length = 994

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 43/231 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 303 EMQVKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 362

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 363 EHLV--DNAGKMVILDKLLKRLKVQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGST 420

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N    +  +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 421 AHEDRIAAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR 479

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 480 -----AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 525


>gi|221508955|gb|EEE34524.1| chromatin remodelling complex protein SNF2L, putative [Toxoplasma
           gondii VEG]
          Length = 1551

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD---------EEKHW 48
           K Q++LY D+  +N+E  N+ S          +QL    N    +D         E +H 
Sbjct: 441 KLQKKLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHM 500

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            E    K+  L+ ++ +  A  + +++       L  +               G T   +
Sbjct: 501 VEAA-GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTE 559

Query: 98  PCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N    K  L      + G G+NL    +I++ F   ++ +   Q ++R    
Sbjct: 560 RQERIDEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQMDLQAMDR---- 614

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  +  +T++  +++R   K  +  L++ 
Sbjct: 615 -AHRIGQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQ 655


>gi|237833381|ref|XP_002365988.1| chromatin remodeling complex protein SNF2L, putative [Toxoplasma
           gondii ME49]
 gi|211963652|gb|EEA98847.1| chromatin remodeling complex protein SNF2L, putative [Toxoplasma
           gondii ME49]
          Length = 1556

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD---------EEKHW 48
           K Q++LY D+  +N+E  N+ S          +QL    N    +D         E +H 
Sbjct: 441 KLQKKLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHM 500

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            E    K+  L+ ++ +  A  + +++       L  +               G T   +
Sbjct: 501 VEAA-GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTE 559

Query: 98  PCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N    K  L      + G G+NL    +I++ F   ++ +   Q ++R    
Sbjct: 560 RQERIDEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQMDLQAMDR---- 614

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  +  +T++  +++R   K  +  L++ 
Sbjct: 615 -AHRIGQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQ 655


>gi|225436359|ref|XP_002270098.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 1016

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
                  D EK+W E        LE+    +  +  I+   + + L  LQ          
Sbjct: 834 TGSRFQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISF 893

Query: 86  KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     +    I+++  E  I +L     + G G+NL    N  V    WW+    
Sbjct: 894 VRLDGTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTAASNAFVL-DPWWNPAVE 952

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           +Q + RI      + G  + V +   I + T++E +L     K 
Sbjct: 953 EQAVMRI-----HRIGQTKRVMIKRFIVKGTVEERMLAVQARKQ 991


>gi|225436357|ref|XP_002270070.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 1036

 Score = 90.8 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
                   D EK+W E        LE+    +  +  I+   + + L  LQ          
Sbjct: 854  TGSRFQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISF 913

Query: 86   KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                      +    I+++  E  I +L     + G G+NL    N  V    WW+    
Sbjct: 914  VRLDGTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTAASNAFVL-DPWWNPAVE 972

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            +Q + RI      + G  + V +   I + T++E +L     K 
Sbjct: 973  EQAVMRI-----HRIGQTKRVMIKRFIVKGTVEERMLAVQARKQ 1011


>gi|296417576|ref|XP_002838429.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634367|emb|CAZ82620.1| unnamed protein product [Tuber melanosporum]
          Length = 1062

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query: 66   ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW-NEGKIPLLFA 114
            ++A   IV   F S L  ++          + +  G T       + E+ ++  + ++  
Sbjct: 903  SSAKKTIVFSQFTSLLDLIEIPIHQKGWTYRRYDGGMTSTARNEALTEFTDDPSVNIILV 962

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   GLNL    + ++    +++     Q I+R       + G +R V V+ LI   
Sbjct: 963  SLKAGNSGLNL-VAASQVIILDPFYNPFIENQAIDR-----AHRIGQQRKVRVHKLIVAG 1016

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            T+++ VL     K  + +  L+    + I 
Sbjct: 1017 TVEDRVLALQEEKRKLIEGALDEKASQGIG 1046


>gi|167533758|ref|XP_001748558.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773077|gb|EDQ86722.1| predicted protein [Monosiga brevicollis MX1]
          Length = 692

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 20/145 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWNE-GKIPLL 112
                ++     + L  +Q             +    G    +    + E+NE   I +L
Sbjct: 487 GRHRALIFAQQRAFLDIVQEELLDKHLPEVTYRRLDGGVPAQQRHDIVVEFNEDPSIDVL 546

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
               +  G GL L  G + ++F    W+  +  Q ++R       + G  R V VY LI 
Sbjct: 547 LLTTSVGGLGLTLT-GADTVIFLEHDWNPMKDLQAMDR-----AHRLGQTRVVNVYRLIT 600

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q T++E ++   R K  + D ++NA
Sbjct: 601 QRTLEEKIMSLQRFKINVADTVVNA 625


>gi|297734859|emb|CBI17093.3| unnamed protein product [Vitis vinifera]
          Length = 1025

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
                   D EK+W E        LE+    +  +  I+   + + L  LQ          
Sbjct: 843  TGSRFQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISF 902

Query: 86   KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                      +    I+++  E  I +L     + G G+NL    N  V    WW+    
Sbjct: 903  VRLDGTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTAASNAFVL-DPWWNPAVE 961

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            +Q + RI      + G  + V +   I + T++E +L     K 
Sbjct: 962  EQAVMRI-----HRIGQTKRVMIKRFIVKGTVEERMLAVQARKQ 1000


>gi|300797826|ref|NP_001178272.1| DNA excision repair protein ERCC-6 [Bos taurus]
          Length = 1481

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 820 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDG 877

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +      I  +NE   I +        G G+NL  G N ++ +   W+     Q  E
Sbjct: 878 TTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARE 936

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 937 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 983


>gi|149235383|ref|XP_001523570.1| DNA repair and recombination protein RAD26 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452979|gb|EDK47235.1| DNA repair and recombination protein RAD26 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 1159

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 33/186 (17%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------- 86
           A Y D  K        K++ L+ +++  ++     ++       L  L+K          
Sbjct: 664 ANYGDPSK------SGKMQVLKNLLQLWQSEDHKTLLFCQTRQMLDILEKFVANLHLLGD 717

Query: 87  --------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          + +    +  +N    + +        G G+NL  G + ++ +  
Sbjct: 718 ESKKFNYLRMDGNTPISRRQQLVDTFNNSPDLHVFLLTTKVGGLGVNLT-GADRVIIYDP 776

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q  ER       + G K+ + +Y L+   +I+E +  R   K+ +Q+ +L  
Sbjct: 777 DWNPSTDIQARERAW-----RLGQKKDITIYRLMTTGSIEEKIYHRQIFKTFLQNKILKD 831

Query: 198 LKKETI 203
            K+  +
Sbjct: 832 PKQRRL 837


>gi|146081503|ref|XP_001464269.1| DNA excision repair protein [Leishmania infantum JPCM5]
 gi|134068360|emb|CAM66648.1| putative DNA excision repair protein [Leishmania infantum JPCM5]
          Length = 1261

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
                   +   K+ AL +++++  +    ++V       L  ++                
Sbjct: 851  SNNPVDLLGSGKLNALLMMLKEWQSFGHRVLVFSQTRMMLDIIENMCEQQAYRYIRMDGA 910

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     +  +NE   I +        G G+NL  G + +V F   W+     Q  ER
Sbjct: 911  TNSHYRQELMDRFNEDVSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNPITDVQARER 969

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 970  AW-----RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1009


>gi|50290467|ref|XP_447665.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526975|emb|CAG60602.1| unnamed protein product [Candida glabrata]
          Length = 1039

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 372 DMQVQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 431

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 432 EHLI--FNAGKMIVLDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRNYNYCRIDGST 489

Query: 94  LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + +V F   W+ +   Q ++R
Sbjct: 490 SHEERIDAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVVLFDSDWNPQADLQAMDR 548

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E VL+R   K  +  L++ 
Sbjct: 549 -----AHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQ 589


>gi|83766213|dbj|BAE56356.1| unnamed protein product [Aspergillus oryzae]
          Length = 1026

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
           K+ + +   KI  L  ++++   N    ++   F   +  L+              GRT 
Sbjct: 836 KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 895

Query: 95  DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 896 VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 949

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 950 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 991


>gi|301785221|ref|XP_002928025.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like,
           partial [Ailuropoda melanoleuca]
          Length = 1114

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 776 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 835

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N    +         + G G+NL    + +V F   W+ +   Q   R       
Sbjct: 836 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AH 889

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 890 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 930


>gi|151946631|gb|EDN64853.1| ATPase component of a four subunit chromatin remodeling complex
           [Saccharomyces cerevisiae YJM789]
 gi|190408605|gb|EDV11870.1| ATPase component of a four subunit chromatin remodeling complex
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1129

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 436 MQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 495

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    ++    +   K   + +++    +  L  L+              G T  +
Sbjct: 496 HLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 555

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 556 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 611

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 612 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 652


>gi|42561667|ref|NP_171871.2| SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|332189485|gb|AEE27606.1| switch 2 [Arabidopsis thaliana]
          Length = 862

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ALE ++    +    I++  +    L  L+K                  +     + 
Sbjct: 529 KMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVD 588

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N      +      + G GLNL    N +V F   W+     Q        R  + G 
Sbjct: 589 DFNASPSKQVFLISTKAGGLGLNL-VSANRVVIFDPNWNPSHDLQA-----QDRSFRYGQ 642

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           KR V V+ L++  +++ELV  R   K  + ++ + A K ET +
Sbjct: 643 KRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV-AGKMETRY 684


>gi|29829734|ref|NP_824368.1| bifunctional protein [Streptomyces avermitilis MA-4680]
 gi|15824163|dbj|BAB69326.1| putative bifunctional protein [Streptomyces avermitilis]
 gi|29606843|dbj|BAC70903.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
          Length = 701

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           +L   + +A+  A      + +   A Y D EK        K+  L  ++ +A  N   +
Sbjct: 477 ELSAADRDAYRKAVAEGNFMAMRRAA-YADAEK------SAKLGRLRELVAEAADNGLKV 529

Query: 72  IVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHG 122
           +V  +F   LA +Q+   +        G    +    +  +       +L A   + G G
Sbjct: 530 VVFSYFREVLATVQQCLGEPVLGPISGGVPAARRQRLVDAFAAIDGHAVLLAQIEAGGTG 589

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ   ++++         + +  +E   V R  + G  R V V+ L+A +++D+ +L+
Sbjct: 590 LNLQ-AASVVILCEP-----QVKPTMEHQAVARAHRMGQIRTVQVHRLLATDSVDDRLLR 643

Query: 183 RLRTKSTIQDL 193
            L+ K  + D 
Sbjct: 644 ILKNKDRLFDA 654


>gi|322497673|emb|CBZ32748.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1262

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
                   +   K+ AL +++++  +    ++V       L  ++                
Sbjct: 851  SNNPVDLLGSGKLNALLMMLKEWQSFGHRVLVFSQTRMMLDIIENMCEQQAYRYIRMDGA 910

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     +  +NE   I +        G G+NL  G + +V F   W+     Q  ER
Sbjct: 911  TNSHYRQELMDRFNEDVSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNPITDVQARER 969

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 970  AW-----RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1009


>gi|212529122|ref|XP_002144718.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210074116|gb|EEA28203.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1043

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              KI+AL  I+ ++A     IV   F   L +++    +            R   ++  
Sbjct: 804 PSTKIRALIRILRKEAPEYKFIVFSVFTQMLDKIEPFLKRANLGYARYDGSMRNDLREAS 863

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             Q  N     +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 864 LEQLRNRSSTRVLLCSLRAGALGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 917

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V +Y +  +NT++E ++     K  + +  +  
Sbjct: 918 NQTIDVKIYKITVKNTVEERIIDLQERKRELANATIEG 955


>gi|157866587|ref|XP_001687685.1| DNA excision repair protein; SNF2 family helicase-like protein
           [Leishmania major strain Friedlin]
 gi|68125299|emb|CAJ03082.1| putative DNA excision repair protein [Leishmania major strain
           Friedlin]
          Length = 1252

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQG 91
                  +   K+ AL +++++  +    ++V       L  ++                
Sbjct: 839 SNNPVDLLGSGKLNALLMMLKEWQSFGHRVLVFSQTRIMLDIIENMCEQQAYSYIRMDGA 898

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    +  +NE   I +        G G+NL  G + +V +   W+     Q  ER
Sbjct: 899 TNSHYRQELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIYDPDWNPITDVQARER 957

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 958 AW-----RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 997


>gi|6319722|ref|NP_009804.1| Isw1p [Saccharomyces cerevisiae S288c]
 gi|2506238|sp|P38144|ISW1_YEAST RecName: Full=ISWI chromatin-remodeling complex ATPase ISW1
 gi|1872131|emb|CAA85208.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810576|tpg|DAA07361.1| TPA: Isw1p [Saccharomyces cerevisiae S288c]
          Length = 1129

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 436 MQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 495

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    ++    +   K   + +++    +  L  L+              G T  +
Sbjct: 496 HLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 555

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 556 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 611

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 612 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 652


>gi|121708629|ref|XP_001272195.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            clavatus NRRL 1]
 gi|119400343|gb|EAW10769.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            clavatus NRRL 1]
          Length = 1522

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K++ L++++ K       +++   F  +L  ++        L +             
Sbjct: 1004 ASGKLQLLQIMLPKLKERGHRVLIFSQFLDNLDIVEDFLDGLGLLHRRLDGRMNSLEKQK 1063

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    P         S G G+NL    + ++     ++  +  Q + R       
Sbjct: 1064 RIDEYNAENSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AH 1117

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V V+ L+ + +++E ++Q  + K  +  +L++ +
Sbjct: 1118 RIGQKNKVLVFQLMTRGSVEEKIMQIGKKKMVLDHVLIDRM 1158


>gi|114600959|ref|XP_517850.2| PREDICTED: chromodomain helicase DNA binding protein 1 [Pan
           troglodytes]
          Length = 1710

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 804 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 863

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 864 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 917

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950


>gi|183979219|dbj|BAG30707.1| decrease in DNA methylation 1 [Brassica rapa]
          Length = 767

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLF 113
           A    +++   +   L  +   F +             L++    IQE+N+ K    +  
Sbjct: 541 AKNHRVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLEERRRQIQEFNDEKSNCRIFL 600

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 601 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLATA 654

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +I+  VL+R  +K  ++ +++
Sbjct: 655 QSIEGRVLKRAYSKLKLEHVVI 676


>gi|115959195|ref|XP_001193315.1| PREDICTED: similar to excision repair protein, partial
           [Strongylocentrotus purpuratus]
          Length = 953

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQE 103
           K+  +E +++  K     +++       L  ++                T+      I +
Sbjct: 332 KMIVVESLLKLWKEQNHRVLLFSQSKQMLDIMEDFVKDRYSYMRMDGTTTISSRQPLITK 391

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N + +I L        G G+NL  G N ++ +   W+     Q  ER       + G  
Sbjct: 392 FNSDPRIFLFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERSW-----RIGQT 445

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V +Y L+   +I+E +  R   K+ + + +L
Sbjct: 446 KQVTIYRLLTAGSIEEKIYHRQIFKTFLTNRVL 478


>gi|323448278|gb|EGB04179.1| hypothetical protein AURANDRAFT_39128 [Aureococcus anophagefferens]
          Length = 711

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 65  KANAAPIIVAYHFN---SDLARLQ-------KAFPQGRTLDKDPCTIQEWNEG--KIPLL 112
           K+    +++   F      LA L        +       +     +I  +N+      + 
Sbjct: 315 KSEGRKVLIFSQFVRLLHLLAELCDTNGFMYERLDGTVKMAARQKSIDRFNDPCSDAFIF 374

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + +V F   W+ +   Q   R       + G  + V VY L+A
Sbjct: 375 LLSTRAGGVGLNLQ-AADTVVIFDSDWNPQNDVQAQARC-----HRLGQTKDVMVYRLVA 428

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             + +  + +R   K  ++  +L
Sbjct: 429 SRSFEGEMFERASRKLGLEKAVL 451


>gi|226531237|ref|NP_001141865.1| chromatin complex subunit A [Zea mays]
 gi|194706224|gb|ACF87196.1| unknown [Zea mays]
          Length = 444

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +++  +  N    + E      +        K + L+ ++ K       +++       
Sbjct: 32  LSMQLRKCCNHPYLFVEHYNMYQREEIVRASGKFELLDRLLPKLQRAGHRVLLFSQMTKL 91

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L         +     G T  ++    + ++N+      +      + G GLNLQ  
Sbjct: 92  LDVLEIYLQMYNFKYMRLDGSTKTEERGRLLADFNKKDSEYFMFLLSTRAGGLGLNLQT- 150

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K  V V+ L++  +I+E +L R + K 
Sbjct: 151 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKM 205

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 206 GIDAKVIQA 214


>gi|150865273|ref|XP_001384421.2| component of SWI/SNF global transcription activator complex
            [Scheffersomyces stipitis CBS 6054]
 gi|149386529|gb|ABN66392.2| component of SWI/SNF global transcription activator complex
            [Scheffersomyces stipitis CBS 6054]
          Length = 1566

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYH------FNSDLARLQK----AFPQGRTLDKDPCTIQ 102
            K + L+ I+ K       +++ +          D  RL+         G   D     ++
Sbjct: 991  KFELLDKILPKFKTTGHRVLIFFQMTQIMDIMEDFLRLRGMKYMRLDGGTKADDRTALLK 1050

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + +V F   W+  +  Q        R  + G
Sbjct: 1051 LFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQDLQA-----QDRAHRIG 1104

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1105 QKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1143


>gi|24666729|ref|NP_649111.1| Chd3 [Drosophila melanogaster]
 gi|25089877|sp|O16102|CHD3_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 3; AltName:
           Full=ATP-dependent helicase Chd3
 gi|23093148|gb|AAF49162.2| Chd3 [Drosophila melanogaster]
          Length = 892

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 20/153 (13%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
              K+  L  ++++  A+   +++       L  L+     +G   D+            
Sbjct: 584 ASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQK 643

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N+   +  +      + G G+NL    + ++ F   W+     Q       +R  
Sbjct: 644 AIDRFNDPVSEHFVFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDVQA-----FSRAH 697

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G K+ V +Y  +  N+++E ++Q  + K  +
Sbjct: 698 RMGQKKKVMIYRFVTHNSVEERIMQVAKHKMML 730


>gi|255723742|ref|XP_002546800.1| hypothetical protein CTRG_01105 [Candida tropicalis MYA-3404]
 gi|240134691|gb|EER34245.1| hypothetical protein CTRG_01105 [Candida tropicalis MYA-3404]
          Length = 475

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 52  HDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRT-LD 95
              KI+AL    + +  +   +  +V   F+S L  ++                GR  ++
Sbjct: 298 SSSKIQALIRHLKNLHSQVPNSKAVVFSQFSSYLDIIETELKLASDDFIVFKFDGRLNMN 357

Query: 96  KDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                ++ +N     GKI +L     + G GLNL    +       WW      Q I+RI
Sbjct: 358 DRSKLLESFNKPLTNGKIAILLLSLRAGGVGLNLTT-ASRAFMMDPWWSPSVEDQAIDRI 416

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 + G    V V   I +N+I+  +L+    K  I
Sbjct: 417 -----HRIGQNETVKVVRFIMENSIETKMLKIQDLKKQI 450


>gi|50294289|ref|XP_449556.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528870|emb|CAG62532.1| unnamed protein product [Candida glabrata]
          Length = 1730

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQL---ANG-AVYYDEEKHWKEVHDE-- 54
              Y +  +     +  +             + +QL    N   V+ + E H     D   
Sbjct: 1056 AMYQQMLKHKQLFIGDQKKNKLVGLRGFNNQLMQLKKICNHPFVFEEVEDHINPTRDTNM 1115

Query: 55   -------KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-D 95
                   K + LE I+ K  A+   +++ +     +           ++     G T  D
Sbjct: 1116 NIWRVAGKFELLERILPKLKASRHRVLIFFQMTQIMDIMEDFLRYIDIKYLRLDGHTRSD 1175

Query: 96   KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++ +N+   +         + G GLNLQ   + ++ F   W+  +  Q       
Sbjct: 1176 ERGELLKLFNDPNSEYFCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----Q 1229

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1230 DRAHRIGQKNEVRIIRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1275


>gi|71000114|ref|XP_754774.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66852411|gb|EAL92736.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159127782|gb|EDP52897.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1133

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K+  L  +++  + N    +V   F   +  L+              GRT 
Sbjct: 942  KNEEWMNSGKVDKLCELLKRFQENGDRTLVFSQFTLVMDILEHVLETLHLGFVRLDGRTN 1001

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 1002 VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 1055

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1056 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1097


>gi|67478494|ref|XP_654639.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471706|gb|EAL49253.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1262

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +++       L  L           +        +     +  +N       +    
Sbjct: 686 GHRVLIFSQMVRMLDVLSNYLHFRGFNYQRLDGAMGREARQRAMDHFNAKDSTDFVFLLS 745

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L  + T
Sbjct: 746 TRAGGLGINLTT-ADTVIIYDSDWNPQNDLQAQARC-----HRIGQEKTVNIYRLATEGT 799

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           I+E +L   + K  +  L++  ++K+ 
Sbjct: 800 IEEKILLSAKKKLVLDHLIIQTMEKKG 826


>gi|303289625|ref|XP_003064100.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226454416|gb|EEH51722.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 743

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 72/211 (34%), Gaps = 32/211 (15%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDE--------KIK 57
           E+   L G  +    S +     +QL     + D                       K +
Sbjct: 431 EMLQKLSGG-VAPVGSTALNNMLMQLRKNCNHPDLISGGLDGSIMFPSAAELVEQCGKFR 489

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN 105
            L+ I++K        ++       L  ++  F Q  +            +    +  +N
Sbjct: 490 LLDRIMKKLRQRGHKTLIFSQMTKMLDLIESYFEQQGSRVCRIDGSVAWQERKEQMDAFN 549

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  + +      + G G+NL    + ++ +   W+  +  Q ++R       + G  + 
Sbjct: 550 TDPSVDIFLLSTRAGGLGINLT-AADTVIIYDSDWNPHQDMQAMDRC-----HRIGQTKP 603

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V  L   ++++  +L R  +K  ++ L++
Sbjct: 604 VHVLRLATAHSVEGKMLSRANSKLALEKLVI 634


>gi|209880656|ref|XP_002141767.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209557373|gb|EEA07418.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 851

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---ARLQK-------AFPQGRT 93
           E +         +  L   I ++    +++  ++   L    RL +             +
Sbjct: 500 ESRPDISGKLYLLSRLLFQIRRSTDDRVVLVSNYTQTLDVFERLCRDLQVPCVRLDGSTS 559

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + K    ++ +N+             + G G+NL  G N LV F   W+    +Q + R+
Sbjct: 560 ITKRHSMVKIFNDPNSNSFAFLLSSKAGGCGINL-IGANRLVMFDPDWNPANDKQALARV 618

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 + G K+  ++Y   +  TI+E + QR   K  +  +L+
Sbjct: 619 W-----RDGQKKNCYIYRFFSTGTIEEKIYQRQLCKDGLSAMLV 657


>gi|121705194|ref|XP_001270860.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119399006|gb|EAW09434.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1131

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K+  L  ++++   N    +V   F   +  L+              GRT 
Sbjct: 941  KNDEWMNSGKVDKLCELLKRFKENGDRTLVFSQFTMVMDILEHVLETLHLEFVRLDGRTN 1000

Query: 95   DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I   ++E   IP+      + G G+NL    N +V F   ++ +E  Q      
Sbjct: 1001 VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQEDVQA----- 1054

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  + V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1055 ENRAHRVGQTQEVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1096


>gi|68299795|ref|NP_001261.2| chromodomain-helicase-DNA-binding protein 1 [Homo sapiens]
 gi|269849549|sp|O14646|CHD1_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|119616504|gb|EAW96098.1| chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1710

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 804 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 863

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 864 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 917

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950


>gi|162135084|ref|YP_001595825.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513931|emb|CAO77757.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 564

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 39/207 (18%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHW---KEVHDEKIKALEVIIEKANAAPIIVAYH 76
           + A  + ++ ++  Q+  G +  D+E          + ++  L  +IE++    +IV   
Sbjct: 356 VIAALAITRLLRLQQITCGYLPTDDEAEPVYTIPGPNRRLDLLCDLIEESQ-HKVIVWAR 414

Query: 77  FNSDLARLQKAFPQGRTL----------DKDPCTIQEWN-------------------EG 107
           F  D+  +  A  +              D+       +                    E 
Sbjct: 415 FQMDITLIMDALRERGISAVRYDGLVNDDERAEAKARFQGERPLYHNGQVVGREAVPPEE 474

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +   +PA+   GL L      ++++S  + L +  Q        R  + G    V  
Sbjct: 475 QARVFVGNPAAGATGLTLT-AAKTVIYYSNSFKLIDRLQ-----SEDRAHRIGQTNNVLY 528

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L+A++++DE V++ LR K  +   +
Sbjct: 529 IDLVAEDSVDEKVVEALRNKFNVASQI 555


>gi|156553964|ref|XP_001602814.1| PREDICTED: similar to hCG32740 [Nasonia vitripennis]
          Length = 1131

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 71/204 (34%), Gaps = 32/204 (15%)

Query: 26  ASKTVKCLQLANG---AVYYDEEKHWKEVHD----------EKIKALEVIIE--KANAAP 70
                   ++ N     +Y D  +   + ++           K+  +  +++  K     
Sbjct: 593 LVALTALRKICNHPDLFLYTDNNQEVLDENEMEKFGHWKRAGKMTVVRSLLKIWKKQGHR 652

Query: 71  IIVA---YHFNSDLARLQK-------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           +++          L  L +              + +   T+ ++N +    +        
Sbjct: 653 VLLFTQSRQMMHILEGLLQKEKYNYLRMDGTTPMGQRQLTVTKFNQDPSYFVFLLTTRVG 712

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++ +   W+     Q  ER       + G +++V VY LI   TI+E 
Sbjct: 713 GLGVNLT-GANRVIIYDPDWNPATDAQARERAW-----RIGQEKSVTVYRLITAGTIEEK 766

Query: 180 VLQRLRTKSTIQDLLLNALKKETI 203
           +  R   K  + + +L   ++  +
Sbjct: 767 MYHRQVFKILLSNKVLEDPRQRRL 790


>gi|156088833|ref|XP_001611823.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
 gi|154799077|gb|EDO08255.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
          Length = 1744

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 18/146 (12%)

Query: 69  APIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGKIP--LLFAHP 116
             ++V   F   L  L+     + +   R             I+E+N    P  +     
Sbjct: 859 HKVLVFTQFQLVLDELEVYCNARGWKYMRLDGSTNKLIRELDIREFNSPSSPYFVYLIST 918

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    N +V F   W+     Q I+R       + G KR+V ++ ++++ T+
Sbjct: 919 RAGGLGINLT-AANHVVLFDEDWNPFIDLQAIDR-----AHRIGQKRSVHIWKVVSEWTV 972

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           +E +      K  +  LL+N+ ++  
Sbjct: 973 EERMALCREKKLHLDKLLINSQRQAM 998


>gi|109078102|ref|XP_001097125.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Macaca
           mulatta]
          Length = 1712

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 806 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 865

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 866 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 919

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 920 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 952


>gi|115462049|ref|NP_001054624.1| Os05g0144300 [Oryza sativa Japonica Group]
 gi|53749343|gb|AAU90202.1| putative transcriptional regulator [Oryza sativa Japonica Group]
 gi|113578175|dbj|BAF16538.1| Os05g0144300 [Oryza sativa Japonica Group]
          Length = 1128

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +++  +  N    + E      +        K + L+ ++ K       +++       
Sbjct: 716 LSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFELLDRLLPKLQRAGHRVLLFSQMTKL 775

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L         +     G T  ++    + ++N+      L      + G GLNLQ  
Sbjct: 776 LDILEVYLQMYQFKYMRLDGSTKTEERGRLLADFNKKDSEYFLFLLSTRAGGLGLNLQT- 834

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K  V V+ L++  +I+E +L R + K 
Sbjct: 835 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKM 889

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 890 GIDAKVIQA 898


>gi|330960628|gb|EGH60888.1| Non-specific serine/threonine protein kinase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 610

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 21/154 (13%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTI 101
           K+     II +A  +   +++   FN     ++KA              G T  +D  +I
Sbjct: 439 KMDRAISIIVEAFFSGKKVLLFSVFNKVEFLIKKALSSYPKSFFWGAINGSTPPEDRQSI 498

Query: 102 -QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +++E G    L  +P + G GLN+     +++ F+  W+     Q   R       + 
Sbjct: 499 VDKFSEFGGAGCLILNPKAAGAGLNIT-AATVVIHFTPVWNPALESQASAR-----AHRR 552

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G  + V +Y+L  ++T++E++++R   K  + + 
Sbjct: 553 GQCQPVTIYHLFYKDTVEEVMVERSAWKRELANQ 586


>gi|311249889|ref|XP_003123851.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus
           scrofa]
          Length = 1706

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 798 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 857

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 858 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 911

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 912 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 944


>gi|297675709|ref|XP_002815806.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Pongo
           abelii]
          Length = 1709

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 804 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 863

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 864 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 917

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950


>gi|159489898|ref|XP_001702928.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158270951|gb|EDO96781.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 962

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 69  APIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              ++       L+ L+              G   D+     +  N   IP+        
Sbjct: 653 HRTLIFSQSKVMLSILEAGVRAMDLEYCRIDGDVDDRQAHVARFQNSKTIPVFLLTSQVG 712

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GL L    + ++     W+     Q ++R       + G  R V VY LI   T++E 
Sbjct: 713 GLGLTLT-AADRVIIVDPAWNPSIDNQSVDR-----AYRMGQTRDVVVYRLITCGTVEEK 766

Query: 180 VLQRLRTKSTIQ 191
           + ++   K  + 
Sbjct: 767 IYRKQVFKGGLS 778


>gi|2645429|gb|AAB87381.1| CHD1 [Homo sapiens]
          Length = 1709

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 804 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 863

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 864 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 917

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950


>gi|302658563|ref|XP_003020983.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
 gi|291184858|gb|EFE40365.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
          Length = 1362

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
            K Y +        +             +   +QL    N    +D               
Sbjct: 788  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 847

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                  K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 848  IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 907

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + + +NE   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 908  RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|290878263|emb|CBK39322.1| Isw1p [Saccharomyces cerevisiae EC1118]
          Length = 1069

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 376 MQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 435

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    ++    +   K   + +++    +  L  L+              G T  +
Sbjct: 436 HLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 495

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 496 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 551

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 552 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 592


>gi|242793636|ref|XP_002482204.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218718792|gb|EED18212.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1788

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 23/175 (13%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQK----- 86
            QL +     D+ KH       +    + I+E++      I+        L  L++     
Sbjct: 1363 QLLSDVPDLDDPKH-----SHRADIFKKIVEESVRLEEKILCFSQSIPTLDYLERLLRSS 1417

Query: 87   -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        +      ++ +N+G+I +      + G GLN+  G N ++ F   ++ 
Sbjct: 1418 GVRFYRLDGSTAVKNRQKDVKSFNQGEISVYLISTRAGGLGLNIT-GANRVIIFDFSFNP 1476

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +Q + R       + G ++ V+VY  +A  T +E+V  +   K+ +   +++
Sbjct: 1477 TWEEQAVGR-----AYRLGQEKPVYVYRFLAGGTYEEVVHNKSIFKTQLAMRVVD 1526


>gi|212546587|ref|XP_002153447.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210064967|gb|EEA19062.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1084

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 24/178 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K+  L  +++K   N    ++   F   +  L+              GRT 
Sbjct: 901  KNQEWMNSGKVDKLCELLKKFKENGDRTLIFSQFTLVMDILEYVLETINMRFFRLDGRTN 960

Query: 95   DKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I    + + +IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 961  VEDRQSILDAFYEQTEIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1014

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-----DLLLNALKKETIHV 205
              R  + G  R V V  L+ + TI+E +    +TK T+      D L ++ + E + +
Sbjct: 1015 ENRAHRVGQTREVEVIRLVTKGTIEEQIYALGQTKLTLDQRVVGDDLSDSKRSEEVGM 1072


>gi|67521594|ref|XP_658859.1| hypothetical protein AN1255.2 [Aspergillus nidulans FGSC A4]
 gi|40746692|gb|EAA65848.1| hypothetical protein AN1255.2 [Aspergillus nidulans FGSC A4]
 gi|259488424|tpe|CBF87846.1| TPA: chromodomain helicase (Chd1), putative (AFU_orthologue;
           AFUA_1G10290) [Aspergillus nidulans FGSC A4]
          Length = 1517

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKA 58
           ++ Y     + Y  L +G   +  +  +  ++  + +N   ++   E    E    +   
Sbjct: 688 LEYYKNILTKNYAALNEGTKGQKQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDV 747

Query: 59  LEVIIEKA---------------NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK------ 96
           L  +I  +               +   +++       L  L      +G T  +      
Sbjct: 748 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIP 807

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +   Q + R 
Sbjct: 808 SASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMT-ADTVILFDSDWNPQADLQAMAR- 865

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  + V VY L++++T++E V++R R K
Sbjct: 866 ----AHRIGQTKPVSVYRLVSKDTVEEEVIERARNK 897


>gi|323310031|gb|EGA63226.1| Isw1p [Saccharomyces cerevisiae FostersO]
          Length = 1069

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 376 MQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 435

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    ++    +   K   + +++    +  L  L+              G T  +
Sbjct: 436 HLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 495

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 496 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 551

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 552 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 592


>gi|296194069|ref|XP_002744792.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Callithrix
           jacchus]
          Length = 1713

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 806 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 865

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 866 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 919

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 920 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 952


>gi|67517153|ref|XP_658459.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
 gi|40746529|gb|EAA65685.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
 gi|259488860|tpe|CBF88651.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1011

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    ++++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 686 KRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDIQAMARI- 743

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K    +Y ++ Q +++E + QR  TK  + D ++ 
Sbjct: 744 ----HRDGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVME 783


>gi|224089288|ref|XP_002186536.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1650

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 648 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 707

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 708 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 761

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 762 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 794


>gi|269969347|sp|B6ZLK2|CHD1_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|218117883|dbj|BAH03306.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
          Length = 1719

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 800 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 859

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 860 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 913

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 914 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 946


>gi|73952004|ref|XP_856319.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 6 [Canis familiaris]
          Length = 1573

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 862

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 863 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 916

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 949


>gi|109658944|gb|AAI17135.1| Chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1709

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 804 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 863

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 864 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 917

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950


>gi|73952002|ref|XP_856275.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 5 [Canis familiaris]
          Length = 1702

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 794 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 853

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 854 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 907

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 908 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 940


>gi|299754942|ref|XP_001828302.2| hypothetical protein CC1G_02883 [Coprinopsis cinerea okayama7#130]
 gi|298410996|gb|EAU93653.2| hypothetical protein CC1G_02883 [Coprinopsis cinerea okayama7#130]
          Length = 928

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
           VY D  K+        +  L  II       +++   + + L  L +     R       
Sbjct: 756 VYSD--KYLSGKFKVVLNLLRKII--GAREKVVIFSSYVTLLELLGECLDARRIKFIEFN 811

Query: 95  -------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        +   N+ +  ++     +   GL++    N ++    WW+    +Q 
Sbjct: 812 GKKSTHERTGALDVIA-NDPRCHVMLISLKAGSVGLDIT-SCNNVILMDPWWNPFVEEQA 869

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I R+      + G  R V VY +I  +TI+  + +  + K T  +  L+
Sbjct: 870 ISRV-----HRFGQTRPVTVYRIITPDTIEPRIQEIQQEKRTQVEAYLD 913


>gi|170050411|ref|XP_001861299.1| chromatin remodelling complex ATPase chain Iswi [Culex
           quinquefasciatus]
 gi|167872033|gb|EDS35416.1| chromatin remodelling complex ATPase chain Iswi [Culex
           quinquefasciatus]
          Length = 730

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEG--KIPLL 112
           KA  + +++   F   L  L+     K +   R     P       I E+N    +  + 
Sbjct: 452 KARGSRVLLFSQFVLMLNILEDYLVWKGYKYSRLTGTTPQETRQKMIDEFNSPGSETFIF 511

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G G+NL    + ++F+ L W+ +   Q  +R       + G  + V V+  + 
Sbjct: 512 MITTRSGGLGINL-PTADTVIFYDLDWNPQADFQAEDR-----AHRIGQLKQVHVFRFVI 565

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             T+DE V    + K+ +   ++
Sbjct: 566 LGTVDEAVYGHSQRKTQLDKAIV 588


>gi|241952695|ref|XP_002419069.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223642409|emb|CAX42654.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 870

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 76/189 (40%), Gaps = 26/189 (13%)

Query: 28  KTVKCLQLANG-AVYYD---EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           K ++   + N   +YY+    ++     +  K + L  ++    ++   +++   F   L
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQTEVIRNSAKFQILNQLLPPLLSSGHKVLIFAQFTQVL 640

Query: 82  ARLQKAFPQGRTLD--------------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             L+    +  +L+              +D    Q  N  K  +      + G G+NL  
Sbjct: 641 DLLEDWLEESSSLNGRICRLDGSTNHQIRDEQISQFNNNPKFKVFLLSTRAGGLGINL-V 699

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++     W+ +   Q I+R+      + G    V ++  + +++I+E+++ R  +K
Sbjct: 700 AADTVILMDNDWNPQMDLQAIDRV-----HRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 755 RFLERLVIQ 763


>gi|156845729|ref|XP_001645754.1| hypothetical protein Kpol_1010p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116422|gb|EDO17896.1| hypothetical protein Kpol_1010p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 661

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + QR+ Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 384 QMQRKWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 443

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
           E          I    +   K + + +++    +  L  L+              G T  
Sbjct: 444 EHLVFNSGKMIILDKLLKKLKESGSRVLIFSQMSRLLDILEDYCYFRGYNYCRIDGSTSH 503

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+NE      +      + G G+NL    + +V +   W+ +   Q ++R  
Sbjct: 504 EERIEAIDEYNEPDSDKFVFLLTTRAGGLGINL-VTADTVVLYDSDWNPQADLQAMDR-- 560

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 561 ---AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 601


>gi|126313541|ref|XP_001362697.1| PREDICTED: similar to transcription termination factor, RNA
            polymerase II [Monodelphis domestica]
          Length = 1151

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCT-IQ 102
               +  LE+I + +     ++   +   L           L  A   G    K     ++
Sbjct: 982  SSLLAELELIQKNSEFQKSVIVSQWTCMLKIVAMHLQRRGLTYAVIDGSVNPKQRMDLVE 1041

Query: 103  EWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       ++     + G GL+L  GGN L    + W+     Q  +RI      + G
Sbjct: 1042 AFNNSCRGPQVMLISLLAGGVGLSLT-GGNHLFLLDMHWNPALEDQACDRI-----YRVG 1095

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V ++  + ++T++E +    R K  +   +L+ 
Sbjct: 1096 QKKDVVIHRFVCEDTVEEKISHLQRRKKDLASQVLSG 1132


>gi|73952000|ref|XP_856236.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 4 [Canis familiaris]
          Length = 1701

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 793 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 852

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 853 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 906

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 907 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 939


>gi|254586715|ref|XP_002498925.1| ZYRO0G21780p [Zygosaccharomyces rouxii]
 gi|238941819|emb|CAR29992.1| ZYRO0G21780p [Zygosaccharomyces rouxii]
          Length = 1094

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEKH 47
            Q+  Y  +  ++++A N++              +QL    N    +D            
Sbjct: 377 MQKTWYKQILEKDLDAVNASGGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 436

Query: 48  WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
               +  K+K L+ ++ K     + +++    +  L  L+              G T  +
Sbjct: 437 HLVYNSAKLKVLDKLLRKMKEQGSRVLIFSQMSRLLDILEDYCFLREYDYCRIDGSTDHE 496

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D   +I E+N       L      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 497 DRIRSIDEYNRPDSNKFLFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 552

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+  +  N++++ +L+R   K  +  L++ 
Sbjct: 553 --AHRIGQKKQVKVFRFVTDNSVEDKILERATQKLRLDQLVIQ 593


>gi|149726480|ref|XP_001504655.1| PREDICTED: chromodomain helicase DNA binding protein 1 [Equus
           caballus]
          Length = 1713

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 805 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 864

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 865 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 918

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 919 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 951


>gi|91089209|ref|XP_967093.1| PREDICTED: similar to helicase [Tribolium castaneum]
 gi|270012470|gb|EFA08918.1| hypothetical protein TcasGA2_TC006624 [Tribolium castaneum]
          Length = 871

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
           +   K   L+ I+ +   N   +++   +   L  ++              G T   +  
Sbjct: 682 LTSGKFLYLDKILAELKQNGHRVLIFSQYVIMLNVMEDYLKIRKHKYLRMDGSTPVNERQ 741

Query: 100 TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +   G   I +      + G G+NL     +++   + ++    +Q  +R       
Sbjct: 742 DLVDEYMGDNSIFIFLLSTRAGGLGINLTSADTVIIH-DIDFNPYNDKQAEDRC-----H 795

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  R V VY L++Q TI+E +L+  + K  ++  +
Sbjct: 796 RMGQTRPVTVYRLVSQGTIEEGMLEMNKEKLKLERQI 832


>gi|195344346|ref|XP_002038749.1| GM10987 [Drosophila sechellia]
 gi|194133770|gb|EDW55286.1| GM10987 [Drosophila sechellia]
          Length = 286

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
                KI  +  I++    K++    IV   + S L  L+    +             + 
Sbjct: 111 HRPSSKINMVIQILKTTILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVK 170

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + E+N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI  
Sbjct: 171 NRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI-- 227

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 228 ---YRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 270


>gi|325096295|gb|EGC49605.1| transcription termination factor 2 [Ajellomyces capsulatus H88]
          Length = 1092

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGR------ 92
            Y       K +    +  +E   E  + API  IV   + S L  ++ A           
Sbjct: 907  YEGPHTKTKALISHLLDTIEESKEAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTR 966

Query: 93   -----TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 TL +    I  + E   + +L A   + G GLNL  G  + +     ++     Q
Sbjct: 967  LDGTMTLKQRNAAIDAFREDDNVTILLATLGAGGVGLNLTAGSRVYIM-EPQYNPAAIAQ 1025

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R+      + G  R V     I +++I+E + +  R K  + D+ LN
Sbjct: 1026 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELARKKQQMADMSLN 1070


>gi|317147437|ref|XP_001822137.2| nucleosome remodeling complex ATPase subunit (Snf2h) [Aspergillus
           oryzae RIB40]
          Length = 733

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 22/147 (14%)

Query: 68  AAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQ---------EWNEGKIPL 111
              II+  +FN  L         +QK     R +  D  T             N+ +  +
Sbjct: 527 GRKIIIFSNFNQALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDPRYMV 586

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++F    W+ +  +Q   R+      + G K  V ++ L 
Sbjct: 587 FLISIRAGGEGLNL-VSSSTVIFLDEDWNPQVMRQAEARV-----HRIGQKHPVRIFKLQ 640

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++ T++E + +R+  K+ +   ++  +
Sbjct: 641 SKGTVEEQISRRIVKKAYVATKIMEDI 667


>gi|307210254|gb|EFN86904.1| Chromodomain-helicase-DNA-binding protein 1 [Harpegnathos saltator]
          Length = 1825

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 67  NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQEWN-EGKIPL-LFA 114
               +++       L  +     +K FP  R             +  +N EG        
Sbjct: 772 KGHRVLIFSQMVRMLDIIGEYLQKKHFPFQRLDGSIKGELRKQALDHFNAEGSTDFCFLL 831

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   W+ +   Q   R       + G K  V +Y L+ +N
Sbjct: 832 STRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKNQVNIYRLVTKN 885

Query: 175 TIDELVLQRLRTKSTIQDLLLNAL 198
           +++E +++R + K  +  L++  +
Sbjct: 886 SVEEEIVERAKQKMVLDHLVIQRM 909


>gi|238496023|ref|XP_002379247.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus flavus NRRL3357]
 gi|220694127|gb|EED50471.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus flavus NRRL3357]
          Length = 917

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 22/147 (14%)

Query: 68  AAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQ---------EWNEGKIPL 111
              II+  +FN  L         +QK     R +  D  T             N+ +  +
Sbjct: 542 GRKIIIFSNFNQALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDPRYMV 601

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++F    W+ +  +Q   R+      + G K  V ++ L 
Sbjct: 602 FLISIRAGGEGLNL-VSSSTVIFLDEDWNPQVMRQAEARV-----HRIGQKHPVRIFKLQ 655

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++ T++E + +R+  K+ +   ++  +
Sbjct: 656 SKGTVEEQISRRIVKKAYVATKIMEDI 682


>gi|302791607|ref|XP_002977570.1| hypothetical protein SELMODRAFT_106921 [Selaginella moellendorffii]
 gi|300154940|gb|EFJ21574.1| hypothetical protein SELMODRAFT_106921 [Selaginella moellendorffii]
          Length = 492

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEW 104
           +  L  ++  +N   +++   F   L  L+               + R  ++    I  +
Sbjct: 291 LNKLLPMLRDSNRR-VLIFSQFTIMLDILEDYLSSEGYTFERIDGKIRGSERQQAAIDRY 349

Query: 105 --NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+ K         + G G+ L    +  + +   W+ +   Q + R       + G  
Sbjct: 350 SANDCKTFAFLLSTRAGGLGITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQT 403

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V +Y LI +NT ++ + +    K  + + +L
Sbjct: 404 KDVRIYRLITRNTYEQHLFECSSRKYGLDEAVL 436


>gi|281350318|gb|EFB25902.1| hypothetical protein PANDA_008326 [Ailuropoda melanoleuca]
          Length = 1566

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 658 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 717

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 718 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 771

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 772 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 804


>gi|164424946|ref|XP_958315.2| hypothetical protein NCU09106 [Neurospora crassa OR74A]
 gi|157070726|gb|EAA29079.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 911

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 1   MKQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           MK+  + + R+   +     ++A +     + C        +   +  W E    K++AL
Sbjct: 679 MKKVDQSELRQPKIEHLINELKALSDFELHLWCRDYKCIRQFDLPDGSWME--SAKVQAL 736

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWN-E 106
             +I++   N    +V   F   +          +++    QG T + +    I ++N +
Sbjct: 737 LKLIKQYQKNGDRALVFTRFAKVIEILGECLASEKIEYLSLQGNTDVSERQELINDFNAD 796

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP+      S G G+NL    N ++ F    + ++  Q        R  + G  R V 
Sbjct: 797 ATIPVFLLTTGSGGTGINLT-AANKVIIFDQSDNPQDDIQA-----ENRAHRLGQTRPVE 850

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +  LI+++T++ELV +  + K  + + ++
Sbjct: 851 IVRLISKDTVEELVYKACQKKLELANKVV 879


>gi|310793157|gb|EFQ28618.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1813

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQ 102
            K++ L  I+ ++      +++       +  L   F Q +           + +    I+
Sbjct: 1278 KVRLLVAILNESESVGDKVLIFTQSIPTMDYLDSLFRQQKRKVARLDGNTPISQRQQNIK 1337

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++N G   L     A+ G GLN+ +G N +V F   ++    QQ I R       + G +
Sbjct: 1338 DFNSGDTQLYIISTAAGGTGLNI-FGANRVVIFDFKYNPIHEQQAIGR-----AYRIGQQ 1391

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V+VY  I   T ++ +  R   K+ +   +++
Sbjct: 1392 KPVYVYTFICGGTYEQTLHDRAIFKTHLASRVVD 1425


>gi|240276494|gb|EER40006.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           H143]
          Length = 819

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 24/151 (15%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
             K++ ++ ++E  +      ++       L  L++                      I 
Sbjct: 480 SGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFII----------------SMDIH 523

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G + ++ +   W+     Q  ER       + G KR V +Y L
Sbjct: 524 VFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDVQARERAW-----RLGQKREVTIYRL 577

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   TI+E +  R   K  + + +L   K+ 
Sbjct: 578 MTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 608


>gi|73951996|ref|XP_848459.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 2 [Canis familiaris]
          Length = 1711

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 862

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 863 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 916

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 949


>gi|302786786|ref|XP_002975164.1| hypothetical protein SELMODRAFT_102612 [Selaginella moellendorffii]
 gi|300157323|gb|EFJ23949.1| hypothetical protein SELMODRAFT_102612 [Selaginella moellendorffii]
          Length = 492

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEW 104
           +  L  ++  +N   +++   F   L  L+               + R  ++    I  +
Sbjct: 291 LNKLLPMLRDSNRR-VLIFSQFTIMLDILEDYLSSEGYTFERIDGKIRGSERQQAAIDRY 349

Query: 105 --NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+ K         + G G+ L    +  + +   W+ +   Q + R       + G  
Sbjct: 350 SANDCKTFAFLLSTRAGGLGITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQT 403

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + V +Y LI +NT ++ + +    K  + + +L
Sbjct: 404 KDVRIYRLITRNTYEQHLFECSSRKYGLDEAVL 436


>gi|311743689|ref|ZP_07717495.1| possible DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312819|gb|EFQ82730.1| possible DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 594

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 35/224 (15%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y  F+ E+  +L  G  ++  +  SK     +LA+ A   +             E++H
Sbjct: 359 KVYDDFEAEMLAELPDGTELQVMDVMSKFGHLSRLASAAADVEVTYGPDVDQVTGLEKRH 418

Query: 48  WK---EVHDEKIKALEVIIEKANAAPIIVAYHFN---------SDLARLQ-KAFPQGRTL 94
                +    K+ AL  ++++    P++V              +  A L+      G+T+
Sbjct: 419 VSLTLKDPSWKVDALLEVLDERPGQPVVVFAPSRQLVTLAGEAAAKAGLRVGYIVGGQTM 478

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +   T+  +  G++ ++     + G GL L      +VF    W L E  Q  +R    
Sbjct: 479 TERTATVTAFQGGELDVVCVTTGAGGVGLTLT-AAKTVVFLQRPWSLVESIQAEDRC--- 534

Query: 155 RQRQAG--FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G      + +  ++A+NTID  V   LR ++     L+ 
Sbjct: 535 --HRIGSEQHDCIEIVDIVARNTIDTRVRAVLRERAGQLADLVQ 576


>gi|45384402|ref|NP_990272.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
 gi|2501846|gb|AAC60282.1| chromo-helicase-DNA-binding on the Z chromosome protein [Gallus
           gallus]
          Length = 1808

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 801 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 860

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 861 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 914

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 915 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 947


>gi|323349632|gb|EGA83848.1| Isw1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1101

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 408 MQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 467

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    ++    +   K   + +++    +  L  L+              G T  +
Sbjct: 468 HLVYNAAKLQVLDKLLKKLKEXGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 527

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 528 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR--- 583

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 584 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 624


>gi|156523172|ref|NP_001096000.1| DNA excision repair protein ERCC-6-like [Bos taurus]
 gi|182645386|sp|A6QQR4|ERC6L_BOVIN RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|151554062|gb|AAI49964.1| ERCC6L protein [Bos taurus]
 gi|296470840|gb|DAA12955.1| DNA excision repair protein ERCC-6-like [Bos taurus]
          Length = 1242

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDP 98
             K+  L  +++K        +V       L  +++                    +++ 
Sbjct: 461 SGKMLFLMDLLKKLRDEGHQTLVFSQSRRILNIIERLLKNRHFKILRIDGTITHLVEREK 520

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L    + +V F   W+     Q ++R+      +
Sbjct: 521 RISLFQQNKDYSVFLLTTQVGGVGLTLT-AASRVVIFDPSWNPATDAQAVDRV-----YR 574

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 575 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 606


>gi|325187562|emb|CCA22100.1| Putative SWI/SNF related putative [Albugo laibachii Nc14]
          Length = 1114

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 44/231 (19%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSAS------KTVKCLQLAN-------------GA 39
           K Y    + QRE Y  +   +    N+             +QL               G 
Sbjct: 419 KLYVGLSEMQREWYMRVLHRDAAHLNAIGGSDRVRLLNILMQLRKVCNHPYLFEGAEPGP 478

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF--------- 88
            Y +    W+  +  K+  L  ++ K  A  +  ++     S +  L+            
Sbjct: 479 PYLEGPHLWE--NCGKLTLLHRLLPKLKAQGSRALIFCQMTSMMDILEDYMRYFNHEYCR 536

Query: 89  PQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             G+T  ++    ++E+N              + G G+NL    +I++ +   W+ +   
Sbjct: 537 LDGQTKGEERDIMMEEFNSPGSTTFCFLLSTRAGGLGINL-ATADIVILYDSDWNPQVDL 595

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q ++R       + G  + V V+  I+  T++E +++R   K  +   ++ 
Sbjct: 596 QAMDR-----AHRIGQTKTVRVFRFISDGTVEEKIVERAERKLYLDAAIIQ 641


>gi|322697909|gb|EFY89684.1| putative helicase-DNA-binding protein [Metarhizium acridum CQMa 102]
          Length = 1508

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 20/166 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCT----- 100
               K+  LE ++ K       +++   F   L  ++        Q R LD +  +     
Sbjct: 996  ASAKLLLLEQMLPKLKERGHRVLIFSQFLQQLDIIEDFLIGIGYQYRRLDGNLSSLEKQR 1055

Query: 101  -IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +NE    I        + G G+NL    + ++     ++  +  Q + R       
Sbjct: 1056 RIDAYNEPGSAIFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1109

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K+ V  + L+ ++T++E ++Q  + K  +   L+ +L  + I
Sbjct: 1110 RIGQKQKVLCFQLMTKDTVEERIMQIGKKKMALDHALIESLDDDEI 1155


>gi|320580373|gb|EFW94596.1| chromatin remodelling complex ATPase chain ISW1 [Pichia angusta
           DL-1]
          Length = 1018

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 43/230 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y +L  ++I+A N A              +QL               G  Y  +
Sbjct: 358 DMQIKWYRNLLEKDIDAVNGAIGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 417

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
           E      +  K+  L+ +++  ++  + +++    +  L  L         Q     G T
Sbjct: 418 EHLV--YNSGKMIVLDKLLKKLQSEGSRVLIFSQMSRLLDILEDYCYLRGYQYCRIDGST 475

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++   +I ++N+      +      + G G+NL    + +V +   W+ +   Q ++R
Sbjct: 476 AHEERIQSIDDFNKPGSDKFIFLLTTRAGGLGINLTT-ADAVVLYDSDWNPQADLQAMDR 534

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 535 -----AHRIGQKKQVKVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 579


>gi|301768523|ref|XP_002919680.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Ailuropoda melanoleuca]
          Length = 1742

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 834 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 893

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 894 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 947

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 948 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 980


>gi|303318849|ref|XP_003069424.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109110|gb|EER27279.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 1415

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ--RELYCDLQGENIEAFNSAS-KTVKCLQLANGAV---YYDEEKHWKEVHDE- 54
            K Y +     ++               S   ++  +L N        +EE +  +  ++ 
Sbjct: 793  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 852

Query: 55   ------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DK 96
                  K + L+ I+ K  A+   +++ +          D  R   L+     G T  D 
Sbjct: 853  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 912

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 913  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 966

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 967  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1011


>gi|115491355|ref|XP_001210305.1| hypothetical protein ATEG_00219 [Aspergillus terreus NIH2624]
 gi|114197165|gb|EAU38865.1| hypothetical protein ATEG_00219 [Aspergillus terreus NIH2624]
          Length = 1459

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDP 98
               K+  L+ ++ K   +   +++       L  L +       Q + LD         
Sbjct: 745 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYQYQRLDGTIAAASRR 804

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 805 LAIEHFNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 858

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  + V VY L++++T++E V++R R K
Sbjct: 859 HRIGQTKPVSVYRLVSKDTVEEEVIERARNK 889


>gi|318040737|ref|ZP_07972693.1| SNF2 family DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 1043

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 26   ASKTVKCLQLANG---AVYYDEEKHWKEVH------DEKIK--ALEVIIEKANAAPIIVA 74
             +   K  Q+ N    A+  D +               K++     +          ++ 
Sbjct: 832  LALLTKLKQICNHPALALKQDPDPSDVGFFKEFAARSAKVQRLEEILEEVIEAGDRALLF 891

Query: 75   YHF----NSDLARLQKAFPQGRT-------LDKDPCTIQEWNEG--KIPLLFAHPASCGH 121
              F    +   A L++ + Q            +    +  + E      L      + G 
Sbjct: 892  TQFAEWGHLLKAHLEQRWKQPVPFLYGNTSKAERQAMVDRFQEDPRGPQLFLLSLKAGGV 951

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    + +     WW+     Q  +R       + G +  V V+  I   +++E + 
Sbjct: 952  GLNLTRASH-VFHIDRWWNPAVENQATDR-----AYRIGQQNRVMVHKFITSGSVEERID 1005

Query: 182  QRLRTKSTIQDLLL 195
            + ++ KS + + ++
Sbjct: 1006 RMIKEKSKLAEDIV 1019


>gi|298705620|emb|CBJ28871.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1406

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 55  KIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ L+V++E+  N   +++  +  + L  LQ                   D+    I  
Sbjct: 745 KMRTLKVLLERFKNKHKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDR 804

Query: 104 W---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +   N  +  +      + G GLNLQ   + ++ + + W+  +  Q  +R       + G
Sbjct: 805 FTKQNAIQNNVFLISTTAGGTGLNLQ-AASKVILYDVNWNPAQDAQAEDR-----AYRIG 858

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + V V+ L++  TI+EL   R   K       +   K E 
Sbjct: 859 QLKEVEVFRLVSTGTIEELTYMRQIYKLQTSAATM-GEKAEG 899


>gi|17561718|ref|NP_503548.1| hypothetical protein F59A7.8 [Caenorhabditis elegans]
 gi|2291218|gb|AAB65339.1| Hypothetical protein F59A7.8 [Caenorhabditis elegans]
          Length = 518

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 94  LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +      +  +N  +G    +     + G GLNL  GGN L+   L W+    QQ  +RI
Sbjct: 391 IKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI 449

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K+ V ++ LI + TI++ V+     K  +   +L  
Sbjct: 450 -----YRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEG 490


>gi|67523645|ref|XP_659882.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|40745233|gb|EAA64389.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|259487671|tpe|CBF86520.1| TPA: catalytic subunit of the SWI/SNF chromatin remodeling complex
            (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1407

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+ K  A    +++ +              L  ++     G T   D   + +
Sbjct: 857  KFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 916

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 917  LFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 970

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 971  QKNEVRILRLITSNSVEEKILERAQFKLDMDGKVIQAGK 1009


>gi|317037066|ref|XP_001398335.2| SNF2 family helicase [Aspergillus niger CBS 513.88]
          Length = 917

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKD 97
              KI+AL  I+     A     ++   + S L  ++               +  ++ +D
Sbjct: 742 PSSKIEALIKILTAKGQAQGTKTVIFSQWTSFLDLIEPHLFRHGIGFARIDGKMSSISRD 801

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T++   +    +L A  + C  GLNL    N  +    WW      Q ++R+      
Sbjct: 802 NSTLRFSTDPSCTVLLASLSVCSVGLNL-VAANQAILCDSWWAPAIEDQAVDRV-----Y 855

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  R   V+ L+ +++I++ VL     K  +   +L A +
Sbjct: 856 RLGQTRETTVWRLVMEDSIEDRVLAIQENKRKL---MLEAFR 894


>gi|315048263|ref|XP_003173506.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
 gi|311341473|gb|EFR00676.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
          Length = 1358

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
            K Y +        +             +   +QL    N    +D               
Sbjct: 784  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 843

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                  K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 844  IWRTAGKFELLDRILPKFLASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 903

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + + +NE   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 904  RSDLLKRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 957

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 958  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1002


>gi|240281981|gb|EER45484.1| SHREC complex subunit Mit1 [Ajellomyces capsulatus H143]
          Length = 676

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 87  ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQK 146

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N    P         S G G+NL    + +V     ++  +  Q + R       
Sbjct: 147 QIDEFNVPGSPYFAFLLSTRSGGVGINL-ATADTVVIMDPDFNPHQDIQALSR-----AH 200

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G ++ V V+ L+ + + +E ++Q  + K  +  +L+ 
Sbjct: 201 RIGQRKKVLVFQLVTKGSAEEKIMQMGKKKMALDQVLIE 239


>gi|310793352|gb|EFQ28813.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1599

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PC 99
              K+  L+ ++ K   +   ++V       L  L         + + LD          
Sbjct: 760 SSGKMMLLDQLLTKLKKDGHRVLVFSQMVKMLDILSDYMALRGYKFQRLDGTIAAGPRRM 819

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + +V F   W+ +   Q + R       
Sbjct: 820 AINHFNAEDSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAMGR-----AH 873

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+ V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 874 RIGQKKPVSIYRLVSKETVEEEVLERARNKLLLEYLTIQA 913


>gi|19075591|ref|NP_588091.1| SNF2 family helicase Rhp26 [Schizosaccharomyces pombe 972h-]
 gi|74698399|sp|Q9UR24|RHP26_SCHPO RecName: Full=DNA repair protein rhp26; AltName: Full=RAD26 homolog
 gi|5902438|dbj|BAA84456.1| Rhp26 [Schizosaccharomyces pombe]
 gi|6562902|emb|CAB62827.1| SNF2 family helicase Rhp26 [Schizosaccharomyces pombe]
          Length = 973

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 26/175 (14%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAF 88
           Y D EK        K+K +  ++   K      ++       L  L+             
Sbjct: 618 YGDPEK------SGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCR 671

Query: 89  PQGRTLDKDPCT-IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T        +  +N+ +   +        G G+NL  G + ++ F   W+     Q
Sbjct: 672 MDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLT-GADRVILFDPDWNPSTDAQ 730

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             ER       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 731 ARERAW-----RLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 780


>gi|118343653|ref|NP_001071647.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975395|gb|AAO61783.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1806

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 805 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 864

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 865 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 918

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 919 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 951


>gi|303317828|ref|XP_003068916.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240108597|gb|EER26771.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 961

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 699 KRQFLVDDFNRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPATDIQAMARI- 756

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 757 ----HRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKLGLADSVMD 796


>gi|126658928|ref|ZP_01730070.1| hypothetical protein CY0110_26537 [Cyanothece sp. CCY0110]
 gi|126619726|gb|EAZ90453.1| hypothetical protein CY0110_26537 [Cyanothece sp. CCY0110]
          Length = 1046

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 96   KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +        +      + G GLNL    N +     WW+     Q  +R   
Sbjct: 921  QRQEMIDRFQHDPNGPRIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPAVENQATDR--- 976

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                + G KR V V+  +   T++E + + L +K  + +  +++ +K
Sbjct: 977  --AFRLGQKRNVQVHKFVCIGTLEERINEMLESKQKLAEQTVDSGEK 1021


>gi|119186353|ref|XP_001243783.1| hypothetical protein CIMG_03224 [Coccidioides immitis RS]
          Length = 964

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 702 KRQFLVDDFNRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPATDIQAMARI- 759

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 760 ----HRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKLGLADSVMD 799


>gi|207343880|gb|EDZ71203.1| YJR035Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1046

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 641 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 689

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 690 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 743

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 744 SIEEKIYHRQIFKQFLTNRILTDPKQK 770


>gi|290973846|ref|XP_002669658.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284083208|gb|EFC36914.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 1029

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 1   MKQYHKF--QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           +K Y ++   RE+   L GE++  +A  +  K      L       D+    ++    K+
Sbjct: 545 VKIYDEYLKSREVTGTLDGEHLLFKAITNLRKVCNHPDLICTEKKPDDFGAVEK--SGKM 602

Query: 57  KALEVIIE--KANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCTIQEW 104
             +E ++   K     +++             F  +             + +    I ++
Sbjct: 603 MVVEKLLSLWKEQNHRVLLFSQSKKMLDVFEPFLQERDYTYSRMDGDTPVKERSVLINQF 662

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N + KI +        G G+NL  G N ++ F   W+     Q +ER       + G  +
Sbjct: 663 NSDDKIFVFLLTTKVGGLGVNL-IGANRIILFDPDWNPSTDLQALERAW-----RLGQTK 716

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY L+   TI+E +  R   K  + + +L
Sbjct: 717 QVTVYRLMTSGTIEEKMYHRQIFKQFLSNKVL 748


>gi|149408270|ref|YP_001294549.1| hypothetical protein ORF041 [Pseudomonas phage M6]
          Length = 564

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 39/207 (18%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHW---KEVHDEKIKALEVIIEKANAAPIIVAYH 76
           + A  + ++ ++  Q+  G +  D+E          + ++  L  +IE++    +IV   
Sbjct: 356 VIAALAITRLLRLQQITCGYLPTDDEAEPVYTIPGPNRRLDLLCELIEESQ-HKVIVWAR 414

Query: 77  FNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIP----------------- 110
           F  D+  +  A  +         G   D +    +   +G+ P                 
Sbjct: 415 FQMDITLIMDALRERGISAVRYDGLVNDDERADAKARFQGERPLYHNGQVVGREAVPPEE 474

Query: 111 ---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +   +PA+   GL L      ++++S  + L +  Q        R  + G    V  
Sbjct: 475 QARVFVGNPAAGATGLTLT-AAKTVIYYSNSFKLIDRLQ-----SEDRAHRIGQTNNVLY 528

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L+A++++DE V++ LR K  +   +
Sbjct: 529 IDLVAEDSVDEKVVEALRNKFNVASQI 555


>gi|328768321|gb|EGF78368.1| hypothetical protein BATDEDRAFT_35805 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1991

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  +Q          +    G   D    +I  ++    +  +   
Sbjct: 664 GGHKVLIFSQMTKCLDLIQDYLRSRGWLYERIDGGVRGDLRQASIDRFSAPGSESFVFLL 723

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    +  + F   W+ +   Q   R       + G K+ V +Y LI +N
Sbjct: 724 CTRAGGVGINLT-AADTCIIFDSDWNPQNDLQAQSRC-----HRIGQKKPVQIYRLITRN 777

Query: 175 TIDELVLQRLRTKSTIQDLLLNAL 198
           T +  +  R   K  +   LL  +
Sbjct: 778 TYEREMFDRASMKLGLDKALLQRM 801


>gi|226497978|ref|NP_001141839.1| chromatin complex subunit A 101 [Zea mays]
 gi|224029693|gb|ACN33922.1| unknown [Zea mays]
          Length = 837

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  L+                  L++    I E+N     + +  
Sbjct: 611 ARKHKVLIFSQWTKVLDILEYYLDSKGLGVCRIDGSVNLEERRRQIAEFNDLNSSLNVFI 670

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +  QQ ++R       + G  R V VY L   
Sbjct: 671 LSTRAGGLGINLT-SADTCILYDSDWNPQMDQQAMDRC-----HRIGQTRPVHVYRLATS 724

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +++E ++++   K  ++ +++
Sbjct: 725 YSVEERIIKKAFGKLKLEHVVI 746


>gi|154273569|ref|XP_001537636.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415244|gb|EDN10597.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 952

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 20/165 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K++ LE+++ K       +++   F  +L  ++        L +             
Sbjct: 515 ASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQK 574

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N    P         S G G+NL    + +V     ++  +  Q + R       
Sbjct: 575 QIDEFNVPGSPYFAFLLSTRSGGVGINL-ATADTVVIMDPDFNPHQDIQALSR-----AH 628

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E 
Sbjct: 629 RIGQRKKVLVFQLVTKGSAEEKIMQMGKKKMALDQVLIEHMDVEG 673


>gi|67523599|ref|XP_659859.1| hypothetical protein AN2255.2 [Aspergillus nidulans FGSC A4]
 gi|40744672|gb|EAA63828.1| hypothetical protein AN2255.2 [Aspergillus nidulans FGSC A4]
 gi|259487648|tpe|CBF86478.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
            AFUA_5G06600) [Aspergillus nidulans FGSC A4]
          Length = 1832

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 18/147 (12%)

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQEWNEGKI 109
            II+++      ++V       L  L++       Q   LD            +++N+G+ 
Sbjct: 1356 IIDESIRAGDKVLVFSQSLHTLDYLERLLKVTNRQYSRLDGQTPAATRQAATKKFNQGEK 1415

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLN+  G N ++ F   +     +Q I R       + G ++ VFVY 
Sbjct: 1416 QVYLISTRAGGLGLNIT-GANRVIIFDFSFSPIWEEQAIGR-----AYRLGQQKPVFVYR 1469

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
             IA  T  E++ ++   K+ +   +++
Sbjct: 1470 FIAGGTFQEIIHEKATYKTQLAVRVVD 1496


>gi|324500144|gb|ADY40077.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1875

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     + Y +L      + N      ++  +  N A       H++E    +++ L 
Sbjct: 745 QYYKWILTKNYKELSKGVKGSINGFVNLIMELKKCCNHASLVRAYDHYEENAQARLQQLM 804

Query: 61  ------VIIEKA------NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE 103
                 ++++K           +++       L  +Q     + FP  R        +++
Sbjct: 805 KSSGKLILLDKLLCRLHETGHRVLIFSQMVMMLDIVQEYLQLRRFPSQRLDGSMRADLRK 864

Query: 104 -----WN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +N EG           + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 865 AALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----A 918

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 919 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLVIQRM 960


>gi|290889294|gb|ADD69945.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1808

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 801 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 860

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 861 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 914

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 915 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 947


>gi|195144322|ref|XP_002013145.1| GL23967 [Drosophila persimilis]
 gi|194102088|gb|EDW24131.1| GL23967 [Drosophila persimilis]
          Length = 1060

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 22/162 (13%)

Query: 52   HDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               K+  +  I++ +    N    I+   + S L  L+      +           +   
Sbjct: 887  PSTKMLKVMEILKSSILKDNNDKAIIVSQWTSVLEILRDHLENDKLSTLSLNGSIPVKNR 946

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+   +  +L     + G GLNL  G N L+   L W+ +   Q  +RI    
Sbjct: 947  QEIVNQFNDQHNQKRILLLSLTAGGVGLNL-VGANHLLLLDLHWNPQLEAQAQDRI---- 1001

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ V +Y  +  +T+++ +L   + K  + + +L  
Sbjct: 1002 -YRVGQKKDVMIYKFVCLDTVEQRILALQQHKLELANGVLTG 1042


>gi|307209151|gb|EFN86289.1| DNA excision repair protein ERCC-6 [Harpegnathos saltator]
          Length = 1005

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 67  NAAPIIVA---YHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
               +++          L  L +              + +    IQ +N      +    
Sbjct: 616 QGHRVLLFTQGIQMIHILESLLQHEGYTYLRLDGSTAMSQRQHVIQMFNNNPSYFVFLLT 675

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G GLNL  G N ++ +   W+     Q   R       + G  + V +Y LI   T
Sbjct: 676 TRVGGLGLNLT-GANRVIIYDPDWNPATDAQARARAW-----RIGQNKQVTIYRLITAGT 729

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I+E +  R   K  + + +L+  ++  +
Sbjct: 730 IEEKMYHRQIFKLLLSNKVLDEPRQRRL 757


>gi|302804676|ref|XP_002984090.1| hypothetical protein SELMODRAFT_119222 [Selaginella moellendorffii]
 gi|300148442|gb|EFJ15102.1| hypothetical protein SELMODRAFT_119222 [Selaginella moellendorffii]
          Length = 561

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ------- 85
           LA+ +   D++     +   K + L  ++   ++     ++   +   L  L+       
Sbjct: 372 LASHSKLRDKD----ALESAKCQLLVKLLPHLQSAGHRPLIFSQWTGMLDILEWVLQVMN 427

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
              +       + +    + ++N+   I        + G GLNL     +++        
Sbjct: 428 LSYRRLDGSTQVCERQSLVDDFNKELDIFAFLLSTRAGGQGLNLTGADTVIIHD------ 481

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    ++R    R  + G  ++V VY L+ ++T+DE +    + K  + D +L  
Sbjct: 482 VDFNPQMDRQAEDRCHRIGQSKSVTVYRLVTKSTVDENIYGIAQRKLVL-DAVLEG 536


>gi|213401963|ref|XP_002171754.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
 gi|211999801|gb|EEB05461.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
          Length = 954

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 51  VHDEKIKALEVIIEKANAA----PIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQ 102
           V   KI+    II   +       +++   F   L      L +   +    +      Q
Sbjct: 771 VTSTKIEKALEIINDIHKKHPSDKVLLFSQFVPFLELFMVPLTQKGLKFIAYNGGMNAAQ 830

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +       +    +L     +   GLNL    +++V    +W+     Q I+R     
Sbjct: 831 RNDALTAFETDPDAIVLLISLKAGNVGLNLTCANHVIVL-DPFWNPFVEDQAIDR----- 884

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G  + + V+ +I   TI+E V+     K  +
Sbjct: 885 AHRIGQTKDITVHRVIVGETIEERVVALQNKKREL 919


>gi|156839953|ref|XP_001643662.1| hypothetical protein Kpol_1040p17 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114282|gb|EDO15804.1| hypothetical protein Kpol_1040p17 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 797

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------A 87
           Y  +EK W   +  K++ L  +++         ++V   F   L  L+K           
Sbjct: 605 YKLDEKAWA--NSGKVEKLCELLKDIISVKKEKVLVFSLFTQVLDILEKVLSSLNYKFLR 662

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++     I ++ E   IP+      + G G+NL    N+++F       +    
Sbjct: 663 LDGSTQVNDRQSLIDKFYEDDTIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 716

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +R    R  + G  + V +  LI +++I+E +LQ  + K  +   +    KK
Sbjct: 717 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKILQLAKNKLDLDTHVSEDDKK 770


>gi|326426828|gb|EGD72398.1| chromodomain helicase DNA binding protein 1 [Salpingoeca sp. ATCC
            50818]
          Length = 1534

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 20/178 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA-----RLQKA 87
            L+N  V   E          K+  L+ ++++ +     +++       L       + K 
Sbjct: 877  LSNPDVSPTENMRNLLKGSGKLILLDKLLQRLHDKGHRVLIFSQMVLMLDVLATYLMMKG 936

Query: 88   FPQGRT-----LDKDPCTIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +P  R       ++    I  +N  G           + G G+NL    + ++ F   W+
Sbjct: 937  YPFQRLDGNIPNERRKQAIDHFNAPGSADFCFILSTRAGGLGVNL-ATADTVIIFDSDWN 995

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             +   Q   R       + G  R V +Y  +++NT++E +L+R + K  +  L++  +
Sbjct: 996  PQNDLQAQAR-----AHRIGQTRQVNIYRFVSKNTVEEDILERAKKKMVLDHLVIQRM 1048


>gi|325185489|emb|CCA19972.1| PREDICTED: similar to SWI/SNFrelated matrixassociated
           actindependent regulator of chromatin a2 isoform b
           isoform 10 putative [Albugo laibachii Nc14]
          Length = 1295

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 32/223 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYDEEKHWKEVH-- 52
            Y + Q+     L+ E  E  + A       +   +QL    N    +  + +  +    
Sbjct: 738 LYRRIQQGGAILLEQEGNEKSSKAKYTFKGLSNVLMQLRKVCNHPYLFQPQGYPIDFDLV 797

Query: 53  --DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE 103
               K + L+ ++ K  A    +++       +  L+     ++F   R         +E
Sbjct: 798 RSSGKFELLDRMLPKLKAAGHRVLMFSQMTQLMHILEDYFQYRSFTYLRLDGSTSADERE 857

Query: 104 -----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +N    P  +      + G GLNL    + ++ F   W+     Q        R 
Sbjct: 858 QRMFMFNASDSPHFIFLLSTRAGGLGLNL-ATADTVIIFDSDWNPAMDAQA-----QDRA 911

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V V+ L+  + ++E +L R   K  + +L++ A K
Sbjct: 912 HRIGQKNEVRVFRLVTNSPVEEKILSRATNKLNMNNLVVEAGK 954


>gi|134083904|emb|CAK48808.1| unnamed protein product [Aspergillus niger]
          Length = 875

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKD 97
              KI+AL  I+     A     ++   + S L  ++               +  ++ +D
Sbjct: 700 PSSKIEALIKILTAKGQAQGTKTVIFSQWTSFLDLIEPHLFRHGIGFARIDGKMSSISRD 759

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T++   +    +L A  + C  GLNL    N  +    WW      Q ++R+      
Sbjct: 760 NSTLRFSTDPSCTVLLASLSVCSVGLNL-VAANQAILCDSWWAPAIEDQAVDRV-----Y 813

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  R   V+ L+ +++I++ VL     K  +   +L A +
Sbjct: 814 RLGQTRETTVWRLVMEDSIEDRVLAIQENKRKL---MLEAFR 852


>gi|323447794|gb|EGB03704.1| hypothetical protein AURANDRAFT_5295 [Aureococcus anophagefferens]
          Length = 154

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           ++    ++V   F   L  + +          A             I  +N      +  
Sbjct: 19  RSEGRKVLVFSQFVRVLGLVAELCAHRGYDAEALTGATPAADRQRAIDRFNASPDAFVFL 78

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + +V +   W+ +   Q + R       + G  R V VY L+A+
Sbjct: 79  LSTRAGGVGINL-CAADTVVIYDSDWNPQNDVQAMARC-----HRLGQTRDVAVYRLVAR 132

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            + +  +L+    K  ++  ++
Sbjct: 133 KSFEGHMLEAAARKLGLERAVM 154


>gi|126272865|ref|XP_001366076.1| PREDICTED: similar to excision repair protein [Monodelphis
           domestica]
          Length = 1492

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 825 DQFGYWKR--SGKMIVVESLLKIWHKQGHRVLLFSQSRQMLHLLEVFLRARDYSYLKMDG 882

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE   I +        G G+NL  G N ++ +   W+     Q  E
Sbjct: 883 TTTIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTDTQARE 941

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 942 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRILKDPKQR 988


>gi|125775660|ref|XP_001359021.1| GA15429 [Drosophila pseudoobscura pseudoobscura]
 gi|54638762|gb|EAL28164.1| GA15429 [Drosophila pseudoobscura pseudoobscura]
          Length = 1058

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 22/162 (13%)

Query: 52   HDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               K+  +  I++ +    N    I+   + S L  L+      +           +   
Sbjct: 885  PSTKMLKVMEILKSSILKDNNDKAIIVSQWTSVLEILRDHLENDKLSTLSLNGSIPVKNR 944

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+   +  +L     + G GLNL  G N L+   L W+ +   Q  +RI    
Sbjct: 945  QEIVNQFNDQHNQKRILLLSLTAGGVGLNL-VGANHLLLLDLHWNPQLEAQAQDRI---- 999

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ V +Y  +  +T+++ +L   + K  + + +L  
Sbjct: 1000 -YRVGQKKDVMIYKFVCLDTVEQRILALQQHKLELANGVLTG 1040


>gi|259147500|emb|CAY80752.1| Rad26p [Saccharomyces cerevisiae EC1118]
          Length = 1085

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|73952006|ref|XP_546008.2| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 1 [Canis familiaris]
          Length = 1799

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 862

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 863 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 916

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 949


>gi|41053461|ref|NP_956607.1| chromodomain-helicase-DNA-binding protein 1-like [Danio rerio]
 gi|82209540|sp|Q7ZU90|CHD1L_DANRE RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|29791985|gb|AAH50498.1| Chromodomain helicase DNA binding protein 1-like [Danio rerio]
          Length = 1026

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QG 91
           +  +H  E    K+  L+ ++   +     +++       L  LQ              G
Sbjct: 326 EMGEHLVE-ASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDG 384

Query: 92  RTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++    I+ ++   + +      + G G+NL    + ++F    ++ +   Q   R
Sbjct: 385 SVRGEERNLAIKNFSTKDVFIFLLSTKAGGVGMNLT-AADTVIFVDGDFNPQNDLQAAAR 443

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  R V V  L+ ++TI+E++  R  +K  + D ++ 
Sbjct: 444 -----AHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIE 484


>gi|71029212|ref|XP_764249.1| DNA-dependent helicase [Theileria parva strain Muguga]
 gi|68351203|gb|EAN31966.1| DNA-dependent helicase, putative [Theileria parva]
          Length = 2026

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 28/169 (16%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRT 93
            A          E  D K+              +++   F   L       + + +   R 
Sbjct: 1007 AASGQNNGVSVEAEDSKVYM----------HKVLIFTQFQLVLDELETYCINRGWKYMRL 1056

Query: 94   LDKDPC-----TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I+E+N       +      + G G+NL    N +V +   W+     Q
Sbjct: 1057 DGSTNKLIRELDIREFNSNNSNYFVYLISTRAGGLGINLT-AANHVVLYDEDWNPFIDLQ 1115

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I+R       + G KR V ++ LI++ T++E +      K  +  L+L
Sbjct: 1116 AIDR-----AHRIGQKRNVHIWKLISEWTVEERMALIREKKLQLDKLIL 1159


>gi|134083941|emb|CAK43037.1| unnamed protein product [Aspergillus niger]
          Length = 1418

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  L+     G T   D   + +
Sbjct: 864  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDDRSDLLK 923

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 924  LFNAPDSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAHRIG 977

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 978  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1016


>gi|21392184|gb|AAM48446.1| RE70645p [Drosophila melanogaster]
 gi|54650558|gb|AAV36858.1| RE74565p [Drosophila melanogaster]
          Length = 835

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 50  EVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
                KI  +  I++    K++    IV   + S L  L+    +             + 
Sbjct: 660 HRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVK 719

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + E+N+      +L     + G GLNL  G N L+   L W  +   Q  +RI  
Sbjct: 720 NRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWSPQLEAQAQDRI-- 776

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 777 ---YRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAK 819


>gi|321470001|gb|EFX80979.1| hypothetical protein DAPPUDRAFT_21484 [Daphnia pulex]
          Length = 665

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 48/192 (25%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K++ L+ ++ +       +++       L  L+                  +D+    ++
Sbjct: 35  KLQTLDNLLRQLKVGKHRVLIFTQMTRMLDVLESFLNHHGHIYLRLDGTTRVDQRQVLME 94

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N  + I        S G G+NL  G + ++F+   W+     Q  +R       + G 
Sbjct: 95  RFNADRRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPTMDAQAQDRC-----HRIGQ 148

Query: 162 KRAVFVY----------------------YLIAQNTIDELVLQRLRTKSTIQDLLLNA-- 197
            R V +Y                       LI++ T++E +L++   K  + D+ +    
Sbjct: 149 TRDVHIYRRVHKFYIAYPLFIDSLLFHFSRLISERTVEENILKKANQKRLLGDIAIEGGN 208

Query: 198 -----LKKETIH 204
                 KK+TIH
Sbjct: 209 FTAATFKKQTIH 220


>gi|320582108|gb|EFW96326.1| chromatin remodelling complex ATPase chain ISW1 [Pichia angusta
           DL-1]
          Length = 1033

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 43/234 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q++ Y  L   +I+A N A+             +QL               G  Y  +
Sbjct: 383 EMQKKWYQKLLERDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 442

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      + +K+K L+ ++++     + +++    +  L  L+              G+T
Sbjct: 443 EHLI--YNSQKMKVLDKMLKRFKEQGSRVLIFSQMSRMLDILEDYCSFRGFEYCRIDGQT 500

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              D    I E++       +      + G G+NL    +I+  +   W+ +   Q ++R
Sbjct: 501 DHVDRIRAIDEYSAPDSKKFVFLLTTRAGGLGINLT-SADIVFLYDSDWNPQADLQAMDR 559

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                  + G  + V V+  + Q  I+E VL+R   K  +  L++   ++  + 
Sbjct: 560 -----AHRIGQTKQVKVFRFVTQKAIEEKVLERASQKLRLDQLVIQQGRQMNVQ 608


>gi|302753248|ref|XP_002960048.1| hypothetical protein SELMODRAFT_139206 [Selaginella moellendorffii]
 gi|300170987|gb|EFJ37587.1| hypothetical protein SELMODRAFT_139206 [Selaginella moellendorffii]
          Length = 551

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ------- 85
           LA+ +   D++     +   K + L  ++   ++     ++   +   L  L+       
Sbjct: 362 LASHSKLRDKD----ALESAKCQLLVKLLPHLQSAGHRPLIFSQWTGMLDILEWVLQVMN 417

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
              +       + +    + ++N+   I        + G GLNL     +++        
Sbjct: 418 LSYRRLDGSTQVCERQSLVDDFNKELDIFAFLLSTRAGGQGLNLTGADTVIIHD------ 471

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    ++R    R  + G  ++V VY L+ ++T+DE +    + K  + D +L  
Sbjct: 472 VDFNPQMDRQAEDRCHRIGQSKSVTVYRLVTKSTVDENIFGIAQRKLVL-DAVLEG 526


>gi|301103963|ref|XP_002901067.1| transcriptional regulator ATRX [Phytophthora infestans T30-4]
 gi|262101405|gb|EEY59457.1| transcriptional regulator ATRX [Phytophthora infestans T30-4]
          Length = 1272

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 16/176 (9%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            ++ K +  ++L +      +           +  + ++I K N       Y       R
Sbjct: 651 EASGKMMILMELLSACQDVGDRVIIFSQSIPTLDTIGLMISKHNK------YQRRHS-KR 703

Query: 84  LQKAFPQGRTLDKDP-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L      G T  +D    I ++N  E  I L+     + G G+NL   GN ++ F + W+
Sbjct: 704 LNYLRIDGSTSQQDRFRQIAQFNDLEEDIDLIMISTKAGGEGINL-CAGNRIIIFDVCWN 762

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q +      R  + G  + VFVY  +   T+++ V      K  +   +++
Sbjct: 763 PCNDSQSM-----CRSYRFGQTKPVFVYRFVTMGTMEKKVYDLQIRKEGVAKRIVD 813


>gi|550429|emb|CAA57290.1| RAD26 [Saccharomyces cerevisiae]
          Length = 1085

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|156846474|ref|XP_001646124.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116797|gb|EDO18266.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1385

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQL---ANGAVYYDEEKHWKEVH---- 52
           + Y +        +      A     K    K +QL    N    +DE +          
Sbjct: 759 QLYQQMLNHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPTRGNS 818

Query: 53  ------DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
                   K + L+ ++ K  A+   +++ +          D  R   L+     G T  
Sbjct: 819 TLLYRVSGKFELLDRVLPKFKASGHRVLIFFQMTQVMDIMEDFLRMRDLKYMRLDGATKA 878

Query: 96  KDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 879 EDRTDMLKVFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 932

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 933 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 979


>gi|328862601|gb|EGG11702.1| hypothetical protein MELLADRAFT_115234 [Melampsora larici-populina
           98AG31]
          Length = 1138

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 88/232 (37%), Gaps = 39/232 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
           + QR+ Y  +  ++I+A N  +             +QL    N    +D           
Sbjct: 448 EMQRKWYKMILEKDIDAVNGVTGKKEGKTRLMNVVMQLRKCCNHPYLFDGAEPGPPFTTD 507

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++   A  + +++    +  L  L+              G T  
Sbjct: 508 EHLVFNSGKMIILDKLLKAMKAKGSRVLIFSQMSRVLDILEDYCLFREYEYCRIDGSTQH 567

Query: 96  KDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    +I+V F   W+ +   Q ++R  
Sbjct: 568 EERIGAIDEYNKEGSSKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR-- 624

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G K+ V+V+  + +N ++E VL+R   K  +  L++   +     
Sbjct: 625 ---AHRIGQKKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVIQQGRANVAQ 673


>gi|292606963|gb|ADE34162.1| chromodomain helicase DNA-binding protein 4 [Schmidtea mediterranea]
          Length = 1868

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 20/153 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
               K++ L  ++ K       +++       L  L+          +      T  +   
Sbjct: 1056 ASGKLELLYKMLPKLKTGGHRVLIFSQMTRLLDILEDFMDYMGYKFERIDGAVTGQQRQD 1115

Query: 100  TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +I  +N       +      + G G+NL    + ++ +   W+     Q       +R  
Sbjct: 1116 SIDRFNAPDSVSFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAH 1169

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G    V +Y  + +NT++E V Q  + K  +
Sbjct: 1170 RIGQSNKVMIYRFVTRNTVEERVTQVAKKKMML 1202


>gi|256083283|ref|XP_002577876.1| helicase [Schistosoma mansoni]
 gi|238663214|emb|CAZ34114.1| helicase, putative [Schistosoma mansoni]
          Length = 1436

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRT 93
            E         K + L+ I+ K       +++     S +  +Q  F           G T
Sbjct: 903  EGKILYRSSGKFELLDRILPKLKCCGHRVLIFCQMTSLMTIMQDYFDYRNFRYLRLDGTT 962

Query: 94   LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D    + ++N+    I +      + G GLNLQ   + ++ F   W+  +  Q    
Sbjct: 963  RSEDRGELLVKFNDTSEDIFIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA--- 1018

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G +  V V  LI+ N+++E +L   R K  +   ++ A
Sbjct: 1019 --QDRAHRIGQQNEVRVLRLISINSVEEKILAAARFKLDVDQKVIQA 1063


>gi|303280531|ref|XP_003059558.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459394|gb|EEH56690.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 553

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 24/185 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVII 63
           + Q+ +  + +G    +   A+      +L   +G+    E           + A  V+ 
Sbjct: 386 RLQKNVPPEYEGGIDGSGKLATLRALLRELTKMDGSRDGGERVVVVSGFSAALDAAAVVC 445

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHG 122
                 P            RL    P     +     ++++N G    ++     + G G
Sbjct: 446 RDL-GLPA----------DRLDGRVP----PNARSGLVRDFNRGSGGRVMLLSCVAGGAG 490

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL  G + L+ F   W+    +Q + R+      + G  R V +Y L+A  T++E V Q
Sbjct: 491 LNL-VGASRLILFDTSWNPAHDRQAMARVW-----RDGQTRPVTIYRLLAAGTVEEKVFQ 544

Query: 183 RLRTK 187
           R   K
Sbjct: 545 RQLMK 549


>gi|207340928|gb|EDZ69127.1| YOR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 824

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL-DKDPCTIQ 102
           K + L+ I+ K  A    +++ +     +           ++     G T  D+    ++
Sbjct: 209 KFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLR 268

Query: 103 EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 269 LFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 322

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 323 QKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 361


>gi|151945105|gb|EDN63356.1| DNA dependent ATPase [Saccharomyces cerevisiae YJM789]
          Length = 1085

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|6322495|ref|NP_012569.1| Rad26p [Saccharomyces cerevisiae S288c]
 gi|730465|sp|P40352|RAD26_YEAST RecName: Full=DNA repair and recombination protein RAD26; AltName:
           Full=ATP-dependent helicase RAD26
 gi|506419|gb|AAA34655.1| gtA1085 [Saccharomyces cerevisiae]
 gi|1015683|emb|CAA89562.1| RAD26 [Saccharomyces cerevisiae]
 gi|285812926|tpg|DAA08824.1| TPA: Rad26p [Saccharomyces cerevisiae S288c]
          Length = 1085

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|320034578|gb|EFW16522.1| SNF2-family ATP-dependent chromatin remodeling factor snf21
            [Coccidioides posadasii str. Silveira]
          Length = 1410

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ--RELYCDLQGENIEAFNSAS-KTVKCLQLANGAV---YYDEEKHWKEVHDE- 54
            K Y +     ++               S   ++  +L N        +EE +  +  ++ 
Sbjct: 788  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 847

Query: 55   ------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DK 96
                  K + L+ I+ K  A+   +++ +          D  R   L+     G T  D 
Sbjct: 848  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 907

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 908  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|119181968|ref|XP_001242147.1| hypothetical protein CIMG_06043 [Coccidioides immitis RS]
          Length = 1410

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ--RELYCDLQGENIEAFNSAS-KTVKCLQLANGAV---YYDEEKHWKEVHDE- 54
            K Y +     ++               S   ++  +L N        +EE +  +  ++ 
Sbjct: 788  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 847

Query: 55   ------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DK 96
                  K + L+ I+ K  A+   +++ +          D  R   L+     G T  D 
Sbjct: 848  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 907

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 908  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|197261472|ref|YP_002154287.1| putative helicase [Pseudomonas phage LMA2]
 gi|197244562|emb|CAR31296.1| putative helicase [Pseudomonas phage LMA2]
          Length = 538

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 319 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 378

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD-KDPCTIQE 103
                LE ++E+     II+      ++ ++               G T + +    I +
Sbjct: 379 VFTDLLEGLLEEDPERSIIIWAMRIQEIGQIAAYLETQGISFGTYYGDTKEAEREKLIDD 438

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q        R  + G   
Sbjct: 439 FQAKRVQVFLGNPAAAGIGITLT-AADVAIYYTTDEDNELRMQ-----SEDRNHRIGTVN 492

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 493 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 527


>gi|82914943|ref|XP_728905.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485550|gb|EAA20470.1| DOMINO B-related [Plasmodium yoelii yoelii]
          Length = 1732

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 47   HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                +   K+ ALE ++ K        ++   F   L  L+                  +
Sbjct: 1398 KDISLGSGKLFALEKLLSKCKKEGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKV 1457

Query: 95   DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    + ++N  K   +  +   S   G+NL    N+++F+   W+    +Q ++R   
Sbjct: 1458 EQRQKIVTKFNNDKSYFIFISSTRSGSIGINLT-AANVVIFYDTDWNPSIDKQAMDRC-- 1514

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  + V V+  + + T++E + ++   K  + ++ +N
Sbjct: 1515 ---HRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICIN 1554


>gi|317036939|ref|XP_001398370.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            niger CBS 513.88]
          Length = 1422

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  L+     G T   D   + +
Sbjct: 868  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDDRSDLLK 927

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 928  LFNAPDSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAHRIG 981

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 982  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1020


>gi|261335950|emb|CBH09283.1| putative DNA excision repair protein ERCC-6 [Heliconius melpomene]
          Length = 944

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 17/140 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE-GKIPLLFAH 115
                ++     + L  L++   + +           + +    I+ +NE  K  +  A 
Sbjct: 516 QGHRTLIFSQSRAMLCILEQHLQKHKFEYLKMDGSVSVAQRQNLIKTFNENAKYLVFLAT 575

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G + ++ +   W+     Q  ER       + G +R V VY L++  T
Sbjct: 576 TRVGGLGVNLT-GADRVIIYDPDWNPATDNQAKERAW-----RIGQQRNVTVYRLLSAGT 629

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E + QR   K+ + + +L
Sbjct: 630 IEEKIYQRQIFKNFLSNKIL 649


>gi|256272897|gb|EEU07865.1| Isw1p [Saccharomyces cerevisiae JAY291]
          Length = 1129

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 18/143 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-CTIQEWNEGKIP--LLF 113
              + +++    +  L  L+              G T  +D    I ++N       +  
Sbjct: 516 GEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFL 575

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +++V +   W+ +   Q ++R       + G K+ V V+ L+  
Sbjct: 576 LTTRAGGLGINLT-SADVVVLYDSDWNPQADLQAMDR-----AHRIGQKKQVKVFRLVTD 629

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           N+++E +L+R   K  +  L++ 
Sbjct: 630 NSVEEKILERATQKLRLDQLVIQ 652


>gi|300796537|ref|NP_001178977.1| chromodomain-helicase-DNA-binding protein 1 [Bos taurus]
          Length = 1810

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 816 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 875

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 876 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 929

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 930 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 962


>gi|194874037|ref|XP_001973329.1| GG16034 [Drosophila erecta]
 gi|190655112|gb|EDV52355.1| GG16034 [Drosophila erecta]
          Length = 869

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 57/153 (37%), Gaps = 20/153 (13%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPC 99
              K++ L  ++++  A+   +++       L  L+        Q   +D          
Sbjct: 558 ASGKLELLSKMLKQLKADNHRVLIFSQMTKMLNILENFLEEEGYQYERIDGLIKGDLRQR 617

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N  K    +      + G G+NL    + ++ F   W+     Q       +R  
Sbjct: 618 AIDRFNAPKAEQFVFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDVQA-----FSRAH 671

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G  + V +Y  +  N+++E ++Q  + K  +
Sbjct: 672 RMGQTKKVMIYRFVTHNSVEERMMQVAKHKMML 704


>gi|45935136|gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida]
 gi|117166029|dbj|BAF36331.1| hypothetical protein [Ipomoea trifida]
          Length = 1040

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ--------G 91
             D EK+W E    K+ AL   +E+  A  +  IV   + + L  LQ A  +         
Sbjct: 864  IDVEKNWVE--SSKVTALLHELEQLRAVNSKSIVFSQWTAFLDLLQIALARNDISFLRLD 921

Query: 92   RTLDK--DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             TL++      I+ ++E   + +L     + G G+NL    N  V    WW+    +Q +
Sbjct: 922  GTLNQQQREKVIKRFSEEDSVLVLLMSLKAGGVGINLTAASNAFVL-DPWWNPAVEEQAV 980

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             R+      + G  + V +   I + T++E +      K 
Sbjct: 981  MRV-----HRIGQTKRVAIKRFIVKGTVEERMEAVQARKQ 1015


>gi|116197901|ref|XP_001224762.1| hypothetical protein CHGG_07106 [Chaetomium globosum CBS 148.51]
 gi|88178385|gb|EAQ85853.1| hypothetical protein CHGG_07106 [Chaetomium globosum CBS 148.51]
          Length = 1129

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
           N   ++V  H    L  LQ  F              + ++    + ++N +    +    
Sbjct: 589 NGDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGTLSYEERQKVVDDFNSDPSQFVFLIS 648

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V F   W+     Q        R  + G  R V V+ L++  T
Sbjct: 649 TKAGGVGLNIT-SANKVVIFDPHWNPAYDLQA-----QDRAYRIGQVRDVDVFRLVSAGT 702

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 703 IEEIVYARQIYKQQQAN 719


>gi|46128325|ref|XP_388716.1| hypothetical protein FG08540.1 [Gibberella zeae PH-1]
 gi|116090837|gb|ABJ56000.1| RING-13 protein [Gibberella zeae]
          Length = 1133

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDP 98
            K W+     K+     ++++        I+   +   L  LQ     +   +    D   
Sbjct: 954  KTWE--PSSKVTECLNLVKEIEGTGEKTIIFSQWTLLLDLLQVAMKRENMAKPERYDGSM 1011

Query: 99   CTIQE------WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               Q       + +GK + ++     +   GLNL    + ++    +W+     Q ++R 
Sbjct: 1012 SATQRNIAAHNFRDGKDVRVMLVSLKAGNAGLNLT-AASRVIIMDPFWNPYIEMQAVDR- 1069

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                  + G ++ V VY ++   T+++ ++     K  + +  L+  +  +I 
Sbjct: 1070 ----AYRIGQQKPVKVYRILTNETVEDRIVDLQNKKKEMVEAALDEKQGASIG 1118


>gi|325188110|emb|CCA22651.1| chromodomainhelicaseDNAbinding protein putative [Albugo laibachii
            Nc14]
          Length = 1883

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT-IQEW--NEGKIPLLFA 114
                +++   F   L  L++             G T        I  +     K  +   
Sbjct: 1226 EGRKVLIFSQFLKQLDLLERYCEYHGFGYERLDGSTNGAARQASIDRFSRPNAKSFVFLL 1285

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + +V F   W+ +   Q   R       + G  + V +Y L+ +N
Sbjct: 1286 STKAGGVGINL-IAADTVVIFDSDWNPQNDLQAQSRC-----HRIGQSKTVQIYRLVTRN 1339

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T +  + +R   K  ++  +L
Sbjct: 1340 TYESEMFERASQKLGLEHAVL 1360


>gi|297477562|ref|XP_002689460.1| PREDICTED: chromodomain helicase DNA binding protein 1-like [Bos
           taurus]
 gi|296485027|gb|DAA27142.1| chromodomain helicase DNA binding protein 1-like [Bos taurus]
          Length = 1810

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 816 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 875

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 876 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 929

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 930 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 962


>gi|307182228|gb|EFN69559.1| Chromodomain-helicase-DNA-binding protein 1 [Camponotus floridanus]
          Length = 1831

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 42/224 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++ +    +G +    N   +  KC    N A      +  +E  +     L+ 
Sbjct: 713 KNYDALRKGM----KGSSSTFLNIVIELKKC---CNHAFLTKPNEAEREKGNG--DYLQT 763

Query: 62  IIEKAN---------------AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK----- 96
           +I  +                   +++       L  L     ++ FP  R         
Sbjct: 764 LIRGSGKLVLLDKLLVRLRDTGHRVLIFSQMVKMLDILSEYLQKRHFPFQRLDGSIKGEL 823

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 824 RKQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 878

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 879 -AHRIGQKNKVNIYRLVTKNSVEEEIVERAKQKMVLDHLVIQRM 921


>gi|281338942|gb|EFB14526.1| hypothetical protein PANDA_015067 [Ailuropoda melanoleuca]
          Length = 1218

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 27/178 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDE-------KIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
           Q AN      +  H  ++ D+       K+  L  ++++        +V       L  +
Sbjct: 415 QGANEGEDASDVDHIDQITDDTLMEESGKMIFLIELLKRLRDEGHQTLVFSQSRQILNII 474

Query: 85  Q-----KAFPQGRTLDKDPCTIQE-------WNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +     + F   R        ++               +        G GL L      +
Sbjct: 475 EHLLKNRHFKILRIDGTVTHLVEREKRINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRV 533

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           V F   W+     Q ++R+      + G K  V VY LI   T++E + +R   K ++
Sbjct: 534 VIFDPSWNPATDAQAVDRV-----YRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 586


>gi|195124269|ref|XP_002006616.1| GI18484 [Drosophila mojavensis]
 gi|193911684|gb|EDW10551.1| GI18484 [Drosophila mojavensis]
          Length = 603

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-CTIQEWNEGKIP--LL 112
           +   + +++       L  L+              G+T  +D    I+E+N    P  + 
Sbjct: 358 QEQGSRVLIFSQMTRMLDILEDYCNWRKFDYCRLDGQTPHEDRDKLIREYNMENSPKFIF 417

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ +   W+ +   Q ++R       + G K+ V V+ LIA
Sbjct: 418 MLSTRAGGLGINL-ATADVVIIYDSDWNPQMDLQAMDR-----AHRIGQKKQVRVFRLIA 471

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           + T+DE +L+    K  +   ++ 
Sbjct: 472 EKTVDEKILEHANIKLRLDRKVIQ 495


>gi|50310725|ref|XP_455384.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644520|emb|CAG98092.1| KLLA0F06710p [Kluyveromyces lactis]
          Length = 1096

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q++ Y  +  ++I+A N ++             +QL               G  Y  +E
Sbjct: 381 MQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 440

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    K+    +   K   + +++    +  L  L+              G T  +
Sbjct: 441 HLVYNSAKLKVLDKLLKKFKEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHE 500

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I ++N       +      + G G+NL    +I+V +   W+ +   Q ++R   
Sbjct: 501 DRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR--- 556

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+  +  N+++E +L+R   K  +  L++ 
Sbjct: 557 --AHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQ 597


>gi|156086958|ref|XP_001610886.1| DNA repair and recombination protein RAD54-like  [Babesia bovis
           T2Bo]
 gi|154798139|gb|EDO07318.1| DNA repair and recombination protein RAD54-like , putative [Babesia
           bovis]
          Length = 824

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 63  IEKANAAPIIVAYHFNSDL---ARLQK--AFPQGRT-----LDKDPCTIQEWNEGKI--P 110
           I +  +  I++  ++   L    R+ K   +P  R      + K    +  +N+      
Sbjct: 494 IRRTTSDRIVIISNYTQTLDVFERMCKQCNYPCVRLDGTLSIKKRHKLVTTFNDPNSHSF 553

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G G+NL  G N LV F   W+    +Q + R+      + G ++  ++Y  
Sbjct: 554 AFLLSSKAGGCGINL-IGANRLVLFDPDWNPANDKQALARVW-----RDGQRKTCYIYRF 607

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
            +  TI+E + QR   K  +  +L+
Sbjct: 608 FSTGTIEEKIYQRQICKDGLSAMLV 632


>gi|190409514|gb|EDV12779.1| DNA dependent ATPase [Saccharomyces cerevisiae RM11-1a]
          Length = 1085

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|172040368|ref|YP_001800082.1| putative DNA/RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851672|emb|CAQ04648.1| putative DNA/RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 1059

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 68/188 (36%), Gaps = 24/188 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
             +  VK  Q+ N   ++  +        +    KI+ +  +I +A      +++   F S
Sbjct: 827  LASLVKIKQICNHPAHFAGDGSGILRGGKHRSPKIERIVELIGQAVAEGKKVLLFTQFPS 886

Query: 80   DLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQY 127
                L  A                +  +    + ++     P ++     + G G+ L  
Sbjct: 887  FGRMLAPAIEAEYGMPVLQLDGAVSRSRRTELVAQFQRDSGPGVMLLSVRAGGTGITLTR 946

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++    WW+     Q  +R       + G ++ V VY  ++  T+DE + + +  K
Sbjct: 947  -ASVVIHIDRWWNPAVEDQATDR-----AYRIGQEQDVDVYKFVSAGTLDERIHEIITGK 1000

Query: 188  STIQDLLL 195
              +   ++
Sbjct: 1001 RELAGTVV 1008


>gi|50309923|ref|XP_454975.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644110|emb|CAH00062.1| KLLA0E22617p [Kluyveromyces lactis]
          Length = 1033

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 21/151 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPCTIQEWNEGKIP 110
           +     ++       L  LQ+                      +      + ++N     
Sbjct: 635 SQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD 694

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L
Sbjct: 695 VFLLTTRVGGLGINLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVTIYRL 748

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 749 MIAGSIEEKIYHRQIFKQFLSNKILKDPKQK 779


>gi|323347929|gb|EGA82189.1| Rad26p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1085

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|256270798|gb|EEU05949.1| Rad26p [Saccharomyces cerevisiae JAY291]
          Length = 1085

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFA 114
           +  LE  I   +            DL+ L      G T +      +  +N     +   
Sbjct: 680 LDILEEFISTKD-----------PDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFLL 728

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N ++ F   W+     Q  ER       + G KR V +Y L+   
Sbjct: 729 TTRVGGLGVNLT-GANRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLMVGG 782

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +I+E +  R   K  + + +L   K++
Sbjct: 783 SIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|167999325|ref|XP_001752368.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696763|gb|EDQ83101.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 729

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69  APIIVAYHFNSDLARL----QKAFPQGRTLDKD------PCTIQEWNE-GKIPLLFAHPA 117
              IV   + S L  L    +K+    R LD           + ++N   ++ ++     
Sbjct: 575 EKAIVFSQWTSMLDLLELPLKKSGLCYRRLDGTMSVVARDRAVSDFNTLPEVTVMIMSLK 634

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLN+    ++L+   +WW+     Q I+R       + G  R V V     +NTI+
Sbjct: 635 AASLGLNMVAASHVLLL-DVWWNPTTEDQAIDR-----AHRIGQTRTVNVSRFTVKNTIE 688

Query: 178 ELVLQRLRTKSTI 190
           + +L     K  I
Sbjct: 689 DRILALQERKRQI 701


>gi|328868808|gb|EGG17186.1| chromo domain-containing protein [Dictyostelium fasciculatum]
          Length = 1716

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LLFAH 115
               +++       L  L +       L          +K    +  +N    P       
Sbjct: 925  GHRVLIFSQMVRMLDILARYLKHRGFLFQRLDGSMSREKRSQAMDRFNAEGSPDFCFLLS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + +V F   ++ +   Q   R       + G K AV +Y L+ + T
Sbjct: 985  TRAGGLGINLST-ADTVVIFDSDYNPQNDLQAEAR-----AHRIGQKNAVNIYRLVTKKT 1038

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
            ++E +L+R + K  +  L++ ++
Sbjct: 1039 VEEDILERAKQKMVLDHLVIQSM 1061


>gi|242033923|ref|XP_002464356.1| hypothetical protein SORBIDRAFT_01g016830 [Sorghum bicolor]
 gi|241918210|gb|EER91354.1| hypothetical protein SORBIDRAFT_01g016830 [Sorghum bicolor]
          Length = 888

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 73/198 (36%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIE--KANAAP 70
           + + +  +A  +A+     + L  G    +         H  K++ALE ++         
Sbjct: 491 EPEKQKKDAELAAAVFGADIDLVGGTAKSENFMGLSDAEHCGKMRALERLLSLWTQQGDK 550

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           I++  +    L  L+K           F     ++     + E+N      +      + 
Sbjct: 551 ILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQSLVDEFNRSPSKQVFLISTRAG 610

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NL    N +V F   W+  +  Q        R  + G +R V V+ L+   +++EL
Sbjct: 611 NLGVNL-VSANRVVIFDPSWNPAQDLQA-----QDRSFRYGQRRHVTVFRLLGAGSLEEL 664

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +  R   K  + ++ ++ 
Sbjct: 665 IYSRQIYKQQLSNIAVSG 682


>gi|123977009|ref|XP_001330686.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
 gi|121897321|gb|EAY02446.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
          Length = 1326

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 29/170 (17%)

Query: 53   DEKIKALEVII----------EKANAAPIIVAYHFNSDLARLQKA------------FPQ 90
              K+  L  ++          E+     +++     S +  + K             F  
Sbjct: 1115 SGKLVVLRDLLLYTLGFGPGKEEVLRQKVVIFCESESAIKEIIKYVIPCLVDTTFVKFDS 1174

Query: 91   GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + D+    I  +     P L  A  ++ GHG+NL    N++VFF L W+     Q  +
Sbjct: 1175 SLSQDERDKNIDAFMSENGPDLFIATKSAAGHGINLT-AANVVVFFELNWNPAIDLQAED 1233

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R+      + G K+ V +Y ++ + TIDE +    + K  I D +++  K
Sbjct: 1234 RV-----HRIGQKKQVRIYSIVMEGTIDERIENSQKRKKMIMDSVIHDQK 1278


>gi|195453451|ref|XP_002073794.1| GK12953 [Drosophila willistoni]
 gi|194169879|gb|EDW84780.1| GK12953 [Drosophila willistoni]
          Length = 1069

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 25/169 (14%)

Query: 52   HDEKIKALEVIIE------KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
               K+  +  I++      K+N   IIV   +   L  L+    + +           + 
Sbjct: 895  PSSKMLKIIEILKTSIFRGKSNDKAIIV-SQWTGVLDILRDHLEKDKFDTLSLNGTIPVK 953

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + ++N+ + P  +L     + G GLNL  G N L+   L W+ +   Q  +RI  
Sbjct: 954  SRQDIVNQFNDPRNPKRILLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLECQAQDRI-- 1010

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                + G K+ V +Y  +   T++E +      K  + + +L   K  T
Sbjct: 1011 ---YRVGQKKDVVIYKFMCLETVEERIKALQDRKLELAEGVLTGAKVST 1056


>gi|50288627|ref|XP_446743.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526051|emb|CAG59670.1| unnamed protein product [Candida glabrata]
          Length = 1354

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPCT-IQ 102
           K + L+ I+ K  A    +++ +          D  R   L+     G T  +D    ++
Sbjct: 775 KFELLDRILPKFKATGHRVLIFFQMTQVMDIMEDFLRMRDLKYMRLDGSTKAEDRNDMLK 834

Query: 103 EWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N    +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 835 EFNVENSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDTDWNPHQDLQA-----QDRAHRIG 888

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 889 QKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 927


>gi|322711378|gb|EFZ02951.1| chromatin remodelling complex ATPase chain ISW1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 1056

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  +  ++I+A N A              +QL               G  Y  +
Sbjct: 363 DMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 422

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ ++ +     + +++    +  L  L+               G 
Sbjct: 423 EHLV--YNAGKMAVLDKLLVRLQKQGSRVLIFSQMSRLLDILEDYCVFRDYKYCRIDGGT 480

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+   +  +      + G G+NL    +I++ +   W+ +   Q ++R
Sbjct: 481 AHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR 539

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V VY  +  N I+E VL+R   K  +  L++ 
Sbjct: 540 -----AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQ 580


>gi|281346214|gb|EFB21798.1| hypothetical protein PANDA_016920 [Ailuropoda melanoleuca]
          Length = 1488

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK--------- 86
           G +  D+  +WK     K+  +E +++        +++       L  L+          
Sbjct: 823 GELEEDQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSY 880

Query: 87  -AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +      I  +NE   I +        G G+NL  G N ++ +   W+    
Sbjct: 881 LKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTD 939

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q  ER       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 940 TQARERAW-----RIGQKKQVTVYRLLTAGTIEEKIFHRQIFKQFLTNRVLKDPKQR 991


>gi|281361297|ref|NP_649751.2| CG10445, isoform C [Drosophila melanogaster]
 gi|272476855|gb|AAF54166.2| CG10445, isoform C [Drosophila melanogaster]
          Length = 945

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
           I  LE ++   N   IIV   + S LA ++K                T  +    ++++N
Sbjct: 776 IDKLEELLTGTNDK-IIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRDFN 834

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  +L     + G GLNL    ++L+   L W+ +  +Q  +RI      + G  + 
Sbjct: 835 ANNEKRVLLLSLTAGGVGLNLNVANHMLI-VDLHWNPQLERQAQDRI-----YRYGQTKP 888

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F+Y  + Q+T+++ +      K  I  ++L
Sbjct: 889 TFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 919


>gi|219120207|ref|XP_002180847.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407563|gb|EEC47499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 495

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 24/161 (14%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
             K+  L+ ++ +  +    ++V   F   L  L+  F              T  +    
Sbjct: 341 SGKLILLDKLLPRLKSEGHRVLVFSQFKIMLDILEDYFSMREMKFERIDGSITGKRRQQA 400

Query: 101 IQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           I  +   +I       ++     + G G+NL    +  + F   W+ +   Q   R    
Sbjct: 401 IDRFQAPEIDGRKPPFIMMLSTRAGGVGINLT-AADTCIIFDSDWNPQNDLQAQARC--- 456

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G  + V VY L+ + T +  +      K  +   +L
Sbjct: 457 --HRIGQTKEVKVYRLLTRKTYEMQMFHMSSMKMGLDQAVL 495


>gi|308497648|ref|XP_003111011.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
 gi|308242891|gb|EFO86843.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
          Length = 966

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN- 105
           K L  I  +     +++   F S L  L+          K       +      I E+N 
Sbjct: 759 KMLPEI--QKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNI 816

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      + G G+NL    +I++   + ++    +Q  +R       + G +++V
Sbjct: 817 SKDLFVFLLSTKAGGLGINLTSANHIIIH-DIDFNPYNDKQAEDRC-----HRMGQEKSV 870

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V  L+++ T++  +L   + K  ++  + + +K +
Sbjct: 871 HVTRLVSKCTVEIGMLALAKKKLQLEKQVTDGVKGQ 906


>gi|301783501|ref|XP_002927161.1| PREDICTED: DNA excision repair protein ERCC-6-like [Ailuropoda
           melanoleuca]
          Length = 1481

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK--------- 86
           G +  D+  +WK     K+  +E +++        +++       L  L+          
Sbjct: 816 GELEEDQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSY 873

Query: 87  -AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +      I  +NE   I +        G G+NL  G N ++ +   W+    
Sbjct: 874 LKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTD 932

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q  ER       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 933 TQARERAW-----RIGQKKQVTVYRLLTAGTIEEKIFHRQIFKQFLTNRVLKDPKQR 984


>gi|183979217|dbj|BAG30708.1| decrease in DNA methylation 1b [Brassica rapa]
          Length = 766

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK--IPLLF 113
           A    ++V   +   L  +   F +             LD+    I E+N+ K    +  
Sbjct: 537 AKNHRVLVFTQWTKILDIMDYYFSEKGFEVCRIDGNVKLDERRRQIDEFNDEKSSCRIFL 596

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 597 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLATA 650

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +I+  VL+R  +K  ++ +++
Sbjct: 651 QSIEGRVLKRAYSKLKLEHVVI 672


>gi|225432404|ref|XP_002276907.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 3462

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--AFPQGRTL--------DKDPCTIQ 102
            K++ L+ ++ K  A    ++        L  +++   + Q R L              I+
Sbjct: 1405 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLHWKQYRYLRLDGHTSGGDRGALIE 1464

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1465 QFNQPDSPYFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1518

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V V  L    T++E V      K  + +  + A
Sbjct: 1519 QKRDVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1555


>gi|224136306|ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222835143|gb|EEE73578.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 866

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 46/243 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKHWKE 50
           K Y    R+    L   +  A N  S     +QL  A    Y         Y+E +H  +
Sbjct: 299 KVYTSILRKELPKLLALSSSASNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVK 358

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEW 104
               K+  L+ ++EK +     +++       L  LQ      +     LD      + +
Sbjct: 359 -ASGKLIILDQLLEKLHDSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERF 417

Query: 105 --------NEGKI---------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                     G+           +      + G GLNL    + ++F+   W+ +  +Q 
Sbjct: 418 AAIRSFSGQSGRSGSESDQNSSFVFMISTRAGGVGLNL-VAADTVIFYEQDWNPQVDKQA 476

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-----STIQDLLLNALKKET 202
           ++R       + G    V    L+ +++++E+++QR + K       + D ++   +KET
Sbjct: 477 LQR-----AHRIGQMNHVLSINLVTRHSVEEVIMQRAKRKLQLSHDVVGDDVMEEDRKET 531

Query: 203 IHV 205
             +
Sbjct: 532 GGI 534


>gi|328783971|ref|XP_001120586.2| PREDICTED: DNA excision repair protein ERCC-6-like [Apis mellifera]
          Length = 1134

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 67  NAAPIIVA---YHFNSDLARLQK-------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAH 115
               +++          L  L +              +     TI+ +N+     +    
Sbjct: 678 QGHRVLLFTQGRQMMHILESLIQNEQYTYLRMDGTTPMSHRQETIRSFNKDSSYFIFLLT 737

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+     Q  ER       + G  + V +Y LI   T
Sbjct: 738 TRVGGLGVNLT-GANRVVIYDPDWNPATDAQARERAW-----RIGQNKNVTIYRLITAGT 791

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I+E +  R   K  + + +L   ++  +
Sbjct: 792 IEEKIYHRQIFKILLSNKVLEDPRQRRL 819


>gi|322500409|emb|CBZ35486.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 736

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----- 93
           A Y + E          ++++  + +   A  +I+   F S +  +  A  +        
Sbjct: 493 AQYKNNEFELSTKLRMVLRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRI 552

Query: 94  -----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                L      I+++   + I ++ A   + G GLNL    +++V    WW+    +Q 
Sbjct: 553 DGTMSLSNRNAVIRQFQTSEHIKIVLASKTATGVGLNLTAANHVVV-VDPWWNPAIEEQA 611

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R       + G K+ V+V   I  +TI++   +  + K    D +L A
Sbjct: 612 VHRC-----YRIGQKKPVYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|256070735|ref|XP_002571698.1| helicase [Schistosoma mansoni]
 gi|238656844|emb|CAZ27928.1| helicase, putative [Schistosoma mansoni]
          Length = 1035

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 69  APIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWNEG-KIPLLFAHPA 117
             +++       L  +Q              G    +D    ++ +NE  +  +      
Sbjct: 366 HKVLIFSQMTRMLDIIQDYLTLRGYSYERLDGSVRGEDRFQAVKSFNEDQETFVFLLSTR 425

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++F    ++ +   Q   R       + G K+ V +  L+ ++T++
Sbjct: 426 AGGQGLNL-VSADTVIFVDSDFNPQIDVQAAGR-----AHRIGQKKPVRIVRLVCRHTVE 479

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +L R   K  +   +LN
Sbjct: 480 EAILSRAENKLKLATRVLN 498


>gi|209877056|ref|XP_002139970.1| transcription regulatory protein SNF2 [Cryptosporidium muris RN66]
 gi|209555576|gb|EEA05621.1| transcription regulatory protein SNF2, putative [Cryptosporidium
            muris RN66]
          Length = 1464

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 28/210 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-----EKIKALEV 61
             Q+ LY +L+       N     ++  ++ N    +  E              K   L+ 
Sbjct: 857  LQQYLYKELENNENSGPNV---LMQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDS 913

Query: 62   IIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC-TIQEWNEGKI 109
            I+   +A    +++       L+ L+              G TL +D   ++Q +N    
Sbjct: 914  ILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFNATNS 973

Query: 110  P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            P  +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G  + V  
Sbjct: 974  PYFVFLLSTKAGGFGINLQ-SADTVILFDSDWNPQNDEQA-----QSRAHRIGQTKEVLT 1027

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +  +T++E +++    K     L++ +
Sbjct: 1028 LRFVTPDTVEERIMKTAGIKLDKDALIIKS 1057


>gi|116191565|ref|XP_001221595.1| hypothetical protein CHGG_05500 [Chaetomium globosum CBS 148.51]
 gi|88181413|gb|EAQ88881.1| hypothetical protein CHGG_05500 [Chaetomium globosum CBS 148.51]
          Length = 982

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              KI AL   + +          +V   F S L+ L+ A  +            T    
Sbjct: 810 SSAKIVALINQLRELRRETPTIKSVVFSQFTSFLSLLEPALARANMHFVRLDGSMTQKAR 869

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++E+    K  +L     + G GLNL      +     WW      Q I+R+     
Sbjct: 870 AAVLEEFKESKKFTILLLSLKAGGVGLNLT-SAKRVYMMDPWWSFAIEAQAIDRV----- 923

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G +  V VY  I ++++++ +L+    K  +   L
Sbjct: 924 HRMGQEDEVKVYRFIVKDSVEQRMLKVQDRKKFLATSL 961


>gi|121712712|ref|XP_001273967.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
 gi|119402120|gb|EAW12541.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
          Length = 1379

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  L+     G T   D   + +
Sbjct: 852  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDDRSDLLK 911

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 912  LFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 965

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 966  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1004


>gi|33086941|gb|AAP92713.1| Swi2/Snf2-related protein DDM1 [Arabidopsis arenosa]
          Length = 764

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK--IPLLF 113
           AN   +++   +   L  +   F +             LD+    I+++++ K    +  
Sbjct: 538 ANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGQVKLDERRRQIKDFSDEKSSCSIFL 597

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 598 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLSTA 651

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +++  VL+R  +K  ++ +++
Sbjct: 652 QSVETRVLKRAYSKLKLEHVVI 673


>gi|219118975|ref|XP_002180254.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408511|gb|EEC48445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 126

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D+    +  +N   K+        S G G+NL  G + ++F+   W+     Q      
Sbjct: 35  VDRRQRLMDRFNNDPKLFCFILSTRSGGLGINLT-GADSVIFYDSDWNPAMDAQA----- 88

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             R  + G  R V +Y  + ++TI+E +L + + K  +
Sbjct: 89  QDRAHRIGQTRDVHIYRFVTEHTIEENILVKAQQKRNL 126


>gi|328867363|gb|EGG15746.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1933

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 23/209 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEV 61
            QY K   E+       ++ +  +A K     +L     +  D++K    V  EK  +LE 
Sbjct: 1644 QYQKIVDEMVQKRLPIDVHSIENAPKLTSLRELLWECGIGKDDDKENGLVKKEK-DSLEN 1702

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EG 107
            + E +     ++     + L  ++                  G    K    +  +N + 
Sbjct: 1703 L-EISTQHRCLIFAQTKAMLDCVESDLLKKILPSVTYLRMDGGTEQMKRQTIVNRFNADP 1761

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I LL       G GLNL  G + ++F    W+  +  Q ++R       + G K+ V V
Sbjct: 1762 TIDLLLLTTTVGGLGLNLT-GADTVIFLEHDWNPMKDLQAMDR-----AHRIGQKKVVNV 1815

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI Q T++E ++   + K  I + ++N
Sbjct: 1816 YRLITQGTLEEKIMGLQKFKLNIANTIVN 1844


>gi|308512703|gb|ADO33005.1| cockayne syndrome protein [Biston betularia]
          Length = 954

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 19/167 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA----------FP 89
            DEEK        K+  +  +++  +      ++     + L  L++             
Sbjct: 497 IDEEKFGHWKRSGKMTVVNSLLKIWQKQGHRALIFSQSRAMLCVLEQYLQSQNFKYLKMD 556

Query: 90  QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + +    I+ +NE  +  +  +     G G+NL  G + ++ +   W+     Q  
Sbjct: 557 GSVLVSQRQSLIKTFNENAEYLVFLSTTRVGGLGVNLT-GADRVIVYDPDWNPATDDQAK 615

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ER       + G +R V VY L+   TI+E + QR   K  + + +L
Sbjct: 616 ERAW-----RIGQERTVTVYRLLCAGTIEEKIYQRQIFKHFLSNKIL 657


>gi|242025432|ref|XP_002433128.1| helicase, putative [Pediculus humanus corporis]
 gi|212518669|gb|EEB20390.1| helicase, putative [Pediculus humanus corporis]
          Length = 942

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC-TIQEWNEG--KIPLL 112
           +   + +++       L  L         +     G T  +D    I E+N    +  + 
Sbjct: 380 QDQDSRVLIFSQMTRMLDILEDYCFWKGYKYCRLDGNTSHEDRQRQINEYNAPNSEKFIF 439

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ +   W+ +   Q ++R       + G  + V V+ LI 
Sbjct: 440 MLSTRAGGLGINL-ATADVVILYDSDWNPQMDLQAMDR-----AHRIGQLKEVRVFRLIT 493

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           +NT++E +++R   K  +  L++ 
Sbjct: 494 ENTVEEKIVERAEVKLRLDKLVIQ 517


>gi|194228023|ref|XP_001488364.2| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6-like [Equus
           caballus]
          Length = 1230

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDP 98
             K+  L  ++++        +V       L  +++                    +++ 
Sbjct: 447 SGKMIFLMDLLQRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKILRIDGTITHLVEREK 506

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 507 RINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 560

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V VY LI   T++E + +R   K ++
Sbjct: 561 IGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 592


>gi|58262112|ref|XP_568466.1| hypothetical protein CNM01240 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134118355|ref|XP_772191.1| hypothetical protein CNBM1100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254799|gb|EAL17544.1| hypothetical protein CNBM1100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230639|gb|AAW46949.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 842

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 26/164 (15%)

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKD 97
              KI+ L  ++ +      N    IV   F S L           ++     G   +  
Sbjct: 635 TSAKIRMLLKLLSEIDEKSGNKEKTIVFSQFTSFLDLVEPFLKENNIKYVRYDGSMRNDH 694

Query: 98  PCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  I++  + K  ++     +   GLNL    N ++   LWW+     Q  +R   
Sbjct: 695 RQVSLAKIRD--DPKTRVILISFKAGSTGLNLTC-CNNVILMDLWWNPALEDQAFDR--- 748

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G K  V ++ L  + T+++ +L    +K  + +  L+ 
Sbjct: 749 --AHRLGQKLDVNIWKLTIEETVEDRILILQNSKRELANAALSG 790


>gi|320582098|gb|EFW96316.1| helicase of the Snf2/Rad54 family [Pichia angusta DL-1]
          Length = 972

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------RL 84
           QLA+     D E +++     K+  L   + +     ++V   F   L          ++
Sbjct: 791 QLAS--FQLDNEAYYQSGKVRKMLQLINKVTE-KGEKVLVFSLFTQVLDILEMVLSLNQI 847

Query: 85  QKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +     G+T   +   I  + +    +P++     + G G+NL    N+++ F   ++  
Sbjct: 848 KFLRLDGQTSVDERQGIIDKFYEADDVPVMLLSTKAGGFGINLVCANNVII-FDQSFNPH 906

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + +Q  +R       + G  + V VY +I ++TI+E +LQ  + K
Sbjct: 907 DDKQAEDR-----AHRVGQTKEVNVYRIICRDTIEENILQLAQNK 946


>gi|281200598|gb|EFA74816.1| chromo domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2720

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 20/167 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPC 99
               K+  ++ ++++  A    +++             +      L +        +    
Sbjct: 1132 SSSKLVLVDKLLQRLKAEGHKVLIFSQMVESLNILEDYLHYREYLYERLDGSVKSEVRQA 1191

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +I+ +   E    +      S G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1192 SIERFMDKESDRFVFLLSTRSGGVGINLT-SADTVILFDSDWNPQSDLQAQARC-----H 1245

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G    V VY LI +NT ++ + +    K  +  ++LN  K   + 
Sbjct: 1246 RIGQTSNVKVYRLITRNTYEQYLFEVATKKLLLDHIVLNNAKNNPMK 1292


>gi|317138645|ref|XP_001817051.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            oryzae RIB40]
          Length = 1422

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCT 100
               K + L+ I+   +A    +++ +              L  ++     G T   D   
Sbjct: 860  TSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSD 919

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 920  LLKLFNAENSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 973

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 974  RIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1015


>gi|301780254|ref|XP_002925544.1| PREDICTED: DNA excision repair protein ERCC-6-like [Ailuropoda
           melanoleuca]
          Length = 1240

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 27/178 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDE-------KIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
           Q AN      +  H  ++ D+       K+  L  ++++        +V       L  +
Sbjct: 435 QGANEGEDASDVDHIDQITDDTLMEESGKMIFLIELLKRLRDEGHQTLVFSQSRQILNII 494

Query: 85  Q-----KAFPQGRTLDKDPCTIQE-------WNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +     + F   R        ++               +        G GL L      +
Sbjct: 495 EHLLKNRHFKILRIDGTVTHLVEREKRINLFQQNKDYSVFLLTTQVGGVGLTLT-AATRV 553

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           V F   W+     Q ++R+      + G K  V VY LI   T++E + +R   K ++
Sbjct: 554 VIFDPSWNPATDAQAVDRV-----YRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 606


>gi|124024526|ref|YP_001018833.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964812|gb|ABM79568.1| Superfamily II DNA/RNA helicases, SNF2 family [Prochlorococcus
            marinus str. MIT 9303]
          Length = 1099

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 26/189 (13%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
                 +  Q+ N      +EK   +       K+  LE I+E+        ++   F ++
Sbjct: 894  LGLLTRLKQICNHPALALKEKTVAKGFMDRSAKLLRLEEILEEVIEAGDRALLFTQF-AE 952

Query: 81   LARLQKAFPQGR------------TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQ 126
               L KA+ Q R            +  +    +  + E      L      + G GLNL 
Sbjct: 953  WGHLLKAYLQQRWRFEVPFLHGSTSKTERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLT 1012

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +     WW+     Q  +R       + G    V V+  I   +++E + + +R 
Sbjct: 1013 RASH-VFHVDRWWNPAVENQATDR-----AYRIGQTNRVMVHKFITSGSVEEKIDRMIRE 1066

Query: 187  KSTIQDLLL 195
            KS + + ++
Sbjct: 1067 KSRLAEDII 1075


>gi|123434210|ref|XP_001308765.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121890461|gb|EAX95835.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1454

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 18/149 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +++       L  L+          +        +     I  +N+ K    +    
Sbjct: 543 GHRVLIFSQMTKMLDILEDYLRYKRYNYERIDGSVKTEDRQQAIDRFNDEKSNSFIFLLC 602

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V +   W+ +   Q   R       + G K+ V  Y  I  NT
Sbjct: 603 TRAGGLGINL-VSADTVVIYDSDWNPQNDIQATARC-----HRIGQKKKVTAYRFITANT 656

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +  +      K  +   +L   K +  H
Sbjct: 657 YERKMFDIASLKKGLDTAVLETNKGDWKH 685


>gi|123432105|ref|XP_001308354.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121890030|gb|EAX95424.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1612

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 33/201 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIK 57
            K  RE       + I+           ++ +   +  D       +E H   +  + +K
Sbjct: 531 EKMIREKLSQASEDEIQ-------LQALIESSGKMILLDKLLPKLHQEGHKVLIFSQMVK 583

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
            L  IIE       I       D  R+    P+          I  + N     +     
Sbjct: 584 VL-DIIEDYLIKKDI-------DCERIDGNVPEPE----RNAAIDRFVNNENCYIFLLCT 631

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ +   W+ +   Q   R       + G  + V VY L+ + T 
Sbjct: 632 RAGGVGINLT-AADTVIIYDSDWNPQNDIQAQSRC-----HRIGQTQKVKVYRLVTRGTY 685

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +  +L R   K  +   LL+ 
Sbjct: 686 ELEMLDRASKKLGLDHALLDG 706


>gi|328855756|gb|EGG04881.1| hypothetical protein MELLADRAFT_116969 [Melampsora larici-populina
            98AG31]
          Length = 2104

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
              +++       L  ++                       K    +Q +N +  I  L  
Sbjct: 1896 HRVLIFCQMREMLDIIEHDLFKNHMPTVTFMRMDGTTEASKRHDIVQTFNADPSIDCLLL 1955

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI + 
Sbjct: 1956 TTHVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRLGQKKVVNVYRLITRA 2009

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   R K  I   ++N
Sbjct: 2010 TLEEKIMGLQRFKLNIATSIVN 2031


>gi|302421718|ref|XP_003008689.1| chromodomain-helicase-DNA-binding protein [Verticillium albo-atrum
            VaMs.102]
 gi|261351835|gb|EEY14263.1| chromodomain-helicase-DNA-binding protein [Verticillium albo-atrum
            VaMs.102]
          Length = 1710

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT--------- 100
               K+  LE+++ K       +++   F + L  + + +  GR  D              
Sbjct: 1119 ASAKLLLLEIMLPKLKERGHRVLLFSQFLNQLD-IVEDYLTGRGYDFRRLDGSISSLEKQ 1177

Query: 101  --IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N    P+        + G G+NL    + ++     ++  +  Q + R      
Sbjct: 1178 RRIDAFNAPDSPVFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQDLQALSR-----A 1231

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G K  V  + L+ +N+++E ++Q  R K  +  +L+ ++  E
Sbjct: 1232 HRIGQKNKVLCFQLMTKNSVEEKIMQIGRKKMALDHVLIESMDNE 1276


>gi|170584903|ref|XP_001897230.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158595354|gb|EDP33914.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 1595

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 37/221 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y +  + +   + G      N   +  KC    N +         +E  D +++ L  
Sbjct: 677 KNYKELSKGVKGSINGF----VNLVMELKKC---CNHSSLVRSYDQAEEGADARLQQLLK 729

Query: 61  -----VIIEKA------NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE- 103
                ++++K           +++       L  +Q     + FP  R        +++ 
Sbjct: 730 SSGKLILLDKLLCRLQETGHRVLIFSQMVMMLDIMQEYLQLRRFPSQRLDGSMRSDLRKA 789

Query: 104 ----WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +N    P         + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 790 ALDHFNAPNSPDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AH 843

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 844 RIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLIIQRM 884


>gi|213407960|ref|XP_002174751.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
 gi|212002798|gb|EEB08458.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
          Length = 930

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLA----RLQKA------FP 89
           +  +W+     KI+AL   + +          IV   F S L     RL+KA        
Sbjct: 751 DMDNWR--SSTKIEALVEELYRLRKKDRTIKSIVFSQFTSMLDLVHWRLRKAGFNCVKLE 808

Query: 90  QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G T      TIQ +  +  I +      + G  LNL    + +     WW+     Q +
Sbjct: 809 GGMTPKARDATIQAFCTDINITVFLVSLKAGGIALNLTE-ASQVFMLDPWWNGAVQWQAM 867

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +RI      + G +R + +  L  +N+I+  +++    K+ +    ++
Sbjct: 868 DRI-----HRIGQRRPIRITTLCIENSIESKIIELQEKKAQMIHATID 910


>gi|320038964|gb|EFW20899.1| DNA repair and recombination protein RAD26 [Coccidioides posadasii
           str. Silveira]
          Length = 961

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 96  KDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K    + ++N               + G GLNL  G + LV F + W+     Q + RI 
Sbjct: 699 KRQFLVDDFNRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPATDIQAMARI- 756

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 757 ----HRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKLGLSDSVMD 796


>gi|309363526|emb|CAP26346.2| hypothetical protein CBG_06016 [Caenorhabditis briggsae AF16]
          Length = 1380

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DKDPCTIQ 102
            K++ L+ I+ K  A    +++ +   + +   +              G T  D+    ++
Sbjct: 893  KLELLDRILPKLKATGHRVLMFFQMTTMMTIFEDYLNFRQYTYLRLDGSTKPDERGELLK 952

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    K  L      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 953  MFNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIG 1006

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 1007 QKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1045


>gi|226287268|gb|EEH42781.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb18]
          Length = 1025

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAH 115
           N   ++V  H    L  LQ  F              T D     +  +N + +  +    
Sbjct: 627 NGDKVLVFSHNVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFLIS 686

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  T
Sbjct: 687 TRAGGIGLNIT-SANKVVVVDPNWNPAFDLQA-----QDRAYRIGQSRDVEVFRLISAGT 740

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 741 IEEIVYARQIYKQQQAN 757


>gi|154313972|ref|XP_001556311.1| hypothetical protein BC1G_04929 [Botryotinia fuckeliana B05.10]
 gi|150849075|gb|EDN24268.1| hypothetical protein BC1G_04929 [Botryotinia fuckeliana B05.10]
          Length = 1065

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLD 95
            ++ +  +     KI  L  I+ ++A     IV   F S L  +     QK +   R   
Sbjct: 816 DEDAELSRIAASTKITHLMKILGKEAAQHKFIVFSQFTSMLDLVEPFLRQKGYKYTRYDG 875

Query: 96  KDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++E       N+    +L         GLNL     +++    +W+    +Q I+
Sbjct: 876 GMKNDLREASLDRLRNDENCRVLLCSLKCGSLGLNLTAATRVVIL-EPFWNPFVEEQAID 934

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      +   K  V VY +  ++T++E +L     K  + +  + 
Sbjct: 935 RV-----HRLTQKIDVIVYKITIKDTVEERILLLQEKKRELANQTIE 976


>gi|146091759|ref|XP_001470113.1| DNA repair protein [Leishmania infantum]
 gi|134084907|emb|CAM69305.1| putative DNA repair protein [Leishmania infantum JPCM5]
          Length = 736

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----- 93
           A Y + E          ++++  + +   A  +I+   F S +  +  A  +        
Sbjct: 493 AQYKNNEFELSTKLRMVLRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRI 552

Query: 94  -----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                L      I+++   + I ++ A   + G GLNL    +++V    WW+    +Q 
Sbjct: 553 DGTMSLSNRNAVIRQFQTSEHIKIVLASKTATGVGLNLTAANHVVV-VDPWWNPAIEEQA 611

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R       + G K+ V+V   I  +TI++   +  + K    D +L A
Sbjct: 612 VHRC-----YRIGQKKPVYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|83764905|dbj|BAE55049.1| unnamed protein product [Aspergillus oryzae]
          Length = 1417

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCT 100
               K + L+ I+   +A    +++ +              L  ++     G T   D   
Sbjct: 855  TSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSD 914

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 915  LLKLFNAENSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 968

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 969  RIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1010


>gi|312214231|emb|CBX94225.1| hypothetical protein [Leptosphaeria maculans]
          Length = 938

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 52  HDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
              K++ L+ ++ + +      I++  ++ + L  +++                   K  
Sbjct: 625 SSTKLRLLDSLVHRIHTTTDEKIVIVSNYTTTLDMIERLLTSLSYTYLRLDGSTPAAKRQ 684

Query: 99  CTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++N               S G G+NL  G + +V F   W+     Q + RI    
Sbjct: 685 PLVNKFNTSSKSTAFAFLLSAKSGGVGINL-IGASRIVLFECDWNPATDLQAMARI---- 739

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K    +Y  + +  +DE + QR  +K  +   +++
Sbjct: 740 -HREGQKLPCKIYRFLIKGGLDEKIYQRQVSKMGLAGAVVD 779


>gi|225850307|ref|YP_002730541.1| helicase, Snf2 family [Persephonella marina EX-H1]
 gi|225646235|gb|ACO04421.1| helicase, Snf2 family [Persephonella marina EX-H1]
          Length = 562

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF-NSDLARLQ 85
             K  Q+ N           K     K+  L  II +   N   +IV  +F    + R+ 
Sbjct: 365 IQKLRQVCNFP--------SKGFDSPKMARLREIIIELIKNDEKVIVFTNFVKYGIERIV 416

Query: 86  KAFPQ------------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNIL 132
                            G   ++    ++++ E K   +      S G GL L    +  
Sbjct: 417 NNLSYYINPDYIVQYHGGMRPEEKIKAVKDFKEKKNKYVFIGTITSAGEGLTLTES-SYA 475

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +FF L W+  +  Q  +RI      + G K  + +Y  + +NT++E +LQ+L  K  +  
Sbjct: 476 IFFDLHWNPAKIWQAEDRI-----HRIGQKNKINIYNFVMRNTVEERILQKLEEKRAMIQ 530

Query: 193 LLLNALKK 200
            +++ ++K
Sbjct: 531 NVIDGIEK 538


>gi|255071819|ref|XP_002499584.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226514846|gb|ACO60842.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1271

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKC-----LQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y +  +    + +G+     N+A +  K      L L++   Y             K + 
Sbjct: 766 YRQVVKGTVTNTEGKVRVLQNTAMQLRKVCNHPYLFLSDDLFYQPSGPEEILRASGKFEI 825

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQEWNE 106
           L+ I+ K       +++       L  +               G T  D     + ++N 
Sbjct: 826 LDRILPKLKRSGHRVLLFSQMVKCLDIIGDYLDWRKYTYLRLDGSTGTDARADLLDKFNA 885

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P  L      + G GLNLQ   + ++ F   W+ +   Q  +R       + G KR 
Sbjct: 886 PDSPYFLFMLSTRAGGMGLNLQT-ADTVIIFDSDWNPQMDAQAEDR-----AHRIGQKRR 939

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +  ++   TI+E +L++   K  I    + A
Sbjct: 940 VKILTMVCDGTIEEDILRKANEKRAIDHKAIQA 972


>gi|156841074|ref|XP_001643913.1| hypothetical protein Kpol_1067p28 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114542|gb|EDO16055.1| hypothetical protein Kpol_1067p28 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1053

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 20/148 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLF 113
           +  LE                F   DL   +     G T +      + ++N     +  
Sbjct: 658 LDVLED------------FISFKDEDLKGFKYLRMDGTTNISHRQSLVDKFNNENYDVFL 705

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G+NL  G + ++ F   W+     Q  ER       + G KR V +Y L+  
Sbjct: 706 LTTRVGGLGVNLT-GADRIIIFDPDWNPSTDMQARERAW-----RIGQKREVSIYRLLIT 759

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            TI+E +  R   K  + + +L   K++
Sbjct: 760 GTIEEKIYHRQLFKQFLTNKILTDPKQK 787


>gi|297797715|ref|XP_002866742.1| hypothetical protein ARALYDRAFT_496925 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312577|gb|EFH43001.1| hypothetical protein ARALYDRAFT_496925 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 764

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK--IPLLF 113
           AN   +++   +   L  +   F +             LD+    I+++++ K    +  
Sbjct: 538 ANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGNVKLDERRRQIKDFSDEKSSCSIFL 597

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L   
Sbjct: 598 LSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLSTA 651

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +++  VL+R  +K  ++ +++
Sbjct: 652 QSVETRVLKRAYSKLKLEHVVI 673


>gi|242089493|ref|XP_002440579.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
 gi|241945864|gb|EES19009.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
          Length = 1127

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +++  +  N    + E      +        K + L+ ++ K       +++       
Sbjct: 715 LSMQLRKCCNHPYLFVEHYNMYQREEIVRASGKFELLDRLLPKLQRAGHRVLLFSQMTKL 774

Query: 81  LARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L         +     G T  ++    + ++N+      +      + G GLNLQ  
Sbjct: 775 LDVLEVYLQMYNFKYMRLDGSTKTEERGRLLADFNKKDSEYFMFLLSTRAGGLGLNLQT- 833

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+ +  QQ  +R       + G K  V V+ L++  +I+E +L R + K 
Sbjct: 834 ADTVIIFDSDWNPQMDQQAEDR-----AHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKM 888

Query: 189 TIQDLLLNA 197
            I   ++ A
Sbjct: 889 GIDAKVIQA 897


>gi|196005243|ref|XP_002112488.1| hypothetical protein TRIADDRAFT_25002 [Trichoplax adhaerens]
 gi|190584529|gb|EDV24598.1| hypothetical protein TRIADDRAFT_25002 [Trichoplax adhaerens]
          Length = 807

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               I ++N     +  +      +   G+NL    + +V F + W+     Q I     
Sbjct: 627 RQRYIDKFNNSNSYRCRVFLISTRAGSLGINLT-AASRVVLFDVGWNPSYDMQAI----- 680

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+ V+VY L+A+ T+++ + +R  TK ++   +++
Sbjct: 681 FRAYRFGQKKTVYVYRLVAKGTMEQKIYERQVTKQSLAYRVID 723


>gi|238495805|ref|XP_002379138.1| DNA excision repair protein Rad16, putative [Aspergillus flavus
           NRRL3357]
 gi|317147580|ref|XP_001822233.2| DNA excision repair protein Rad16 [Aspergillus oryzae RIB40]
 gi|220694018|gb|EED50362.1| DNA excision repair protein Rad16, putative [Aspergillus flavus
           NRRL3357]
          Length = 958

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L      +  K      IV   F S L     RL++A      LD      +
Sbjct: 782 TSSTKIEMLVYELYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 841

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I  + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 842 RQKSIDFFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 896

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 897 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTINKDQGEAL 943


>gi|170097814|ref|XP_001880126.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
 gi|164644564|gb|EDR08813.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
          Length = 828

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 30/168 (17%)

Query: 48  WKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDK 96
            +     KI  L  +++        +V   F S L ++ +   +               +
Sbjct: 665 IRAGSSAKIDQLIHLLKLTPTNEKSLVFSQFTSFLDKIAETMDEEGIPYVRFDGQMSAKR 724

Query: 97  DPCTIQEWNEGKIP-------------LLFAHPASCGHGLNLQYG-GNILVFFSLWWDLE 142
              T+  ++E                 ++     +   GLNL     N +     WW   
Sbjct: 725 RQETLASFSEKGNRRPRSGLASKRNPRVMLISLKAGALGLNLTGKFANNVYLMDPWWQEG 784

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q ++R+      + G K+ V VY LIA++T++  VL+    K  +
Sbjct: 785 IESQAVDRVN-----RIGQKKNVHVYQLIAEDTVESKVLEIQERKKQL 827


>gi|310791010|gb|EFQ26543.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1037

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR------ 83
            C   A        E  W  +   K+  L  +I +   N   ++V   F   +        
Sbjct: 839  CRDYACIRHLDVPEGSW--MDSGKVTKLLQLIHQYRDNGDRVLVFSKFAKVIEILREVLH 896

Query: 84   ---LQKAFPQGRTLDKDPCT-IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               ++     G+T   +    I ++N+   I        + G G+NL    N ++ F   
Sbjct: 897  TDGIKHCVLYGQTSVGERQDLIDDFNKDIDITAFLLTTGAGGTGINLT-SANKIIIFDQS 955

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + ++  Q        R  + G  R V V  L+  +TI+EL+ +  + K  + + +  A+
Sbjct: 956  DNPQDDIQA-----ENRAHRLGQTRDVEVIRLLTAHTIEELIYKACQKKIELAEKVTGAV 1010

Query: 199  K 199
            +
Sbjct: 1011 E 1011


>gi|268536304|ref|XP_002633287.1| Hypothetical protein CBG06016 [Caenorhabditis briggsae]
          Length = 1369

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DKDPCTIQ 102
            K++ L+ I+ K  A    +++ +   + +   +              G T  D+    ++
Sbjct: 886  KLELLDRILPKLKATGHRVLMFFQMTTMMTIFEDYLNFRQYTYLRLDGSTKPDERGELLK 945

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    K  L      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 946  MFNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIG 999

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 1000 QKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1038


>gi|73997935|ref|XP_534944.2| PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne
           syndrome protein CSB) [Canis familiaris]
          Length = 1486

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        +++       L  L+               
Sbjct: 825 DQFGYWKR--SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDG 882

Query: 91  GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +      I  +NE   I +        G G+NL  G N ++ +   W+     Q  E
Sbjct: 883 TTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPSTDTQARE 941

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 942 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 988


>gi|71755921|ref|XP_828875.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834261|gb|EAN79763.1| DNA repair protein, putative [Trypanosoma brucei]
          Length = 762

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
           K+ +     K++ +   I+          +I+  HF S +  +  A              
Sbjct: 547 KNEEVEVSTKLQMILDSIQAMKKNCPDDKMIIFSHFTSFMDVISVALDNLDIAHLRLDGT 606

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L      I+ +     + ++ A   + G GLNL    ++LV    WW+    +Q + R
Sbjct: 607 MSLSSRNLVIRCFQSSDDVRVILASKTATGVGLNLTAANHVLV-VDPWWNPAIEEQAVHR 665

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  + G ++ V V  +I ++TI++   +  R K    D +L A  K
Sbjct: 666 C-----YRIGQRKHVHVKRIIIEDTIEQYCYEICRRKKEFGDAILRAATK 710


>gi|261334803|emb|CBH17797.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 762

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
           K+ +     K++ +   I+          +I+  HF S +  +  A              
Sbjct: 547 KNEEVEVSTKLQMILDSIQAMKKNCPDDKMIIFSHFTSFMDVISVALDNLDIAHLRLDGT 606

Query: 94  --LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L      I+ +     + ++ A   + G GLNL    ++LV    WW+    +Q + R
Sbjct: 607 MSLSSRNLVIRCFQSSDDVRVILASKTATGVGLNLTAANHVLV-VDPWWNPAIEEQAVHR 665

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  + G ++ V V  +I ++TI++   +  R K    D +L A  K
Sbjct: 666 C-----YRIGQRKHVHVKRIIIEDTIEQYCYEICRRKKEFGDAILRAATK 710


>gi|154279322|ref|XP_001540474.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412417|gb|EDN07804.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1148

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    ++   F          L  LQ  F    G T 
Sbjct: 933  KNDEWMHSGKVDKLCDLLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 992

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 993  VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1046

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1047 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1088


>gi|326468544|gb|EGD92553.1| SNF2 family ATP dependent chromatin remodeling factor snf21
           [Trichophyton tonsurans CBS 112818]
          Length = 1352

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
           K Y +        +             +   +QL    N    +D               
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFLRFRGMKYLRLDGATKSDD 897

Query: 98  PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + + +NE   +         + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 898 RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|326434134|gb|EGD79704.1| hypothetical protein PTSG_10689 [Salpingoeca sp. ATCC 50818]
          Length = 1641

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 27/221 (12%)

Query: 2    KQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQ-------LANGAVYYDEEKHWKEVHD 53
              Y  F       ++    + AF+      K          LA+   Y D          
Sbjct: 951  ALYEHFLASRDVGEILRGELTAFHGIDLLRKICNHPDLAPSLADPPDYSDPSVPLPWERS 1010

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCT 100
             K+  L  ++         +++       L  L+                     + P  
Sbjct: 1011 GKMIVLRQLLRIWFQKQHRVLLFCQTRQMLNMLESFIKYEHYTYLRLDGTVSVKQRQPLI 1070

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                +  ++ +      + G GLNL  G + ++ F   W+     Q  ER       + G
Sbjct: 1071 RYFNDNPEVFIFILTTRTGGLGLNLT-GADRVIIFDPDWNPSVDVQAKERAW-----RIG 1124

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             ++ V +Y L+   TI+E +  R   K  +   ++   K+ 
Sbjct: 1125 QQKPVTIYRLLTAGTIEEKIYHRQVFKQLLTFKVMKDPKQR 1165


>gi|326429323|gb|EGD74893.1| hypothetical protein PTSG_07121 [Salpingoeca sp. ATCC 50818]
          Length = 808

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+     +   + +  +      + G GLNL  G +  + +   W+ +   Q  +R    
Sbjct: 627 DRKEEIRRFHEDDECFVFLLSTRAGGLGLNL-VGADTCIIYDSDWNPQVDLQAQDRC--- 682

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G  + V V+ LI  NT+D+ +L+R   K  ++ L++
Sbjct: 683 --HRIGQSKTVLVFRLITANTVDQRILERAAGKRKLERLVI 721


>gi|303283067|ref|XP_003060825.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458296|gb|EEH55594.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 214

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 31/193 (16%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN- 67
           R++ C       EA ++A            A +  +          K+ AL+ ++ K + 
Sbjct: 39  RKVCCHPFLFGDEAVHAAV-----------AKHGGDRVEALIAASGKLTALDEMLPKLHA 87

Query: 68  -AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLFA 114
               +++   F+  L  L++                +L +       +N  +G+  +   
Sbjct: 88  GGHKVLIFSQFSMMLDVLEEFCEARGHAHLRLDGSTSLARRRYETALFNKPDGRHFVYLC 147

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ   + ++     W+    QQ        R  + G KR V V  +   +
Sbjct: 148 STRAGGLGINLQ-SADTVILADPDWNPTYDQQA-----QDRAHRLGQKRPVTVIRMCHAS 201

Query: 175 TIDELVLQRLRTK 187
           +++E +L     K
Sbjct: 202 SVEEGILAVAAKK 214


>gi|119479961|ref|XP_001260009.1| DNA excision repair protein (Rad26L), putative [Neosartorya
           fischeri NRRL 181]
 gi|119408163|gb|EAW18112.1| DNA excision repair protein (Rad26L), putative [Neosartorya
           fischeri NRRL 181]
          Length = 1077

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              T ++    + E+N + K  +   
Sbjct: 702 ANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMTYEERTKVVDEFNSDPKQFVFLI 761

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 762 STRSGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQSRNVEVFRLISAG 815

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 816 TIEEIVYARQIYKQQQAN 833


>gi|326479975|gb|EGE03985.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Trichophyton equinum CBS 127.97]
          Length = 1352

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDE----------EKHW 48
           K Y +        +             +   +QL    N    +D               
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKD 97
                 K + L+ I+ K  A+   +++ +          D  R   ++     G T   D
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFLRFRGMKYLRLDGATKSDD 897

Query: 98  PCTI-QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              + + +NE +           + G GLNLQ   + ++ +   W+  +  Q        
Sbjct: 898 RSDLLRRFNEPESEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|326775329|ref|ZP_08234594.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655662|gb|EGE40508.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 743

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPI 71
           +L  E+ EA+  A  + + L++   A Y   E         K+  L  ++++A+     +
Sbjct: 525 ELGAEDREAYREAVASGRFLRMRRAA-YAVPE------ASAKLGRLRELVDEASESGLKV 577

Query: 72  IVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHG 122
           +V  +F   LA + +A                +    +  ++      +L +   + G G
Sbjct: 578 VVFSYFREVLATVGEALGPDAFGPLSGSVAPARRQELVDAFSAVDGHAVLLSQIQAGGTG 637

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ +++
Sbjct: 638 LNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRPVQVHRLLATDSVDQRLVE 691

Query: 183 RLRTKSTIQDL 193
            L  K  + D 
Sbjct: 692 LLARKDRLFDA 702


>gi|50312307|ref|XP_456186.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645322|emb|CAG98894.1| KLLA0F24838p [Kluyveromyces lactis]
          Length = 1062

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q E Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 375 DMQIEWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 434

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
           E      +  K+  L+ +++K     + +++    +  L  L+                 
Sbjct: 435 EHLV--FNSGKMIVLDKLLKKKKEQGSRVLIFSQMSRLLDILEDYCYFRGYEYCRIDGST 492

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           + D+    I E+N+   +  +      + G G+NL    + +V +   W+ +   Q ++R
Sbjct: 493 SHDERVEAIDEYNKPNSEKFIFLLTTRAGGLGINL-VTADTVVLYDSDWNPQADLQAMDR 551

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ VFVY  + +N I+E V++R   K  +  L++ 
Sbjct: 552 -----AHRIGQKKQVFVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 592


>gi|328702354|ref|XP_003241882.1| PREDICTED: TATA-binding protein-associated factor 172-like
            [Acyrthosiphon pisum]
          Length = 1782

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++     S L  ++                     + +    +  +N +  I  L  
Sbjct: 1578 HRALIFCQLKSMLNIIENDLFKAHMPNVSYLRLDGSVPVSQRYALVNRFNVDPSIDTLIM 1637

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W   +  Q ++R       + G K+ V VY LI ++
Sbjct: 1638 TTQVGGLGLNLT-GADTVIFVEHDWSPMKDLQAMDR-----AHRIGQKKVVNVYRLITRS 1691

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            T++E ++   + K    + ++++
Sbjct: 1692 TLEEKIMNFQKFKLKTANTVISS 1714


>gi|83770000|dbj|BAE60135.1| unnamed protein product [Aspergillus oryzae]
          Length = 774

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 22/147 (14%)

Query: 68  AAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQ---------EWNEGKIPL 111
              II+  +FN  L         +QK     R +  D  T             N+ +  +
Sbjct: 445 GRKIIIFSNFNQALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDPRYMV 504

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++F    W+ +  +Q   R+      + G K  V ++ L 
Sbjct: 505 FLISIRAGGEGLNL-VSSSTVIFLDEDWNPQVMRQAEARV-----HRIGQKHPVRIFKLQ 558

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++ T++E + +R+  K+ +   ++  +
Sbjct: 559 SKGTVEEQISRRIVKKAYVATKIMEDI 585


>gi|328772764|gb|EGF82802.1| hypothetical protein BATDEDRAFT_9456 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1238

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
           +  K+  L+ ++   +     +++       L  L           +        +    
Sbjct: 481 NSGKMVLLDKLLASLHEGQHRVLIFSQMVRMLNILSDYLSYRGYTFQRLDGTTQSEVRKR 540

Query: 100 TIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +++ +N  G           + G GLNL    + ++ F   W+ +   Q I R       
Sbjct: 541 SMEHFNAAGSTDFAFLLSTRAGGLGLNL-ATADTVILFDSDWNPQNDLQAIAR-----AH 594

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K  V VY  ++++TI+E +++R + K  ++  ++  +
Sbjct: 595 RIGQKNTVNVYRFLSKDTIEEDIIERAKRKMVLEYSIIKTM 635


>gi|302845240|ref|XP_002954159.1| hypothetical protein VOLCADRAFT_30537 [Volvox carteri f.
           nagariensis]
 gi|300260658|gb|EFJ44876.1| hypothetical protein VOLCADRAFT_30537 [Volvox carteri f.
           nagariensis]
          Length = 462

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 18/132 (13%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +++       L  +++                   +    I ++N       +    
Sbjct: 337 RHKVLLFATMTRALDLVEEYLEWRGFEWARLDGSTAAAERGALIADFNRPDSDTFIFLLS 396

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNLQ   + ++ +   W+ +   Q   R       + G  R V V+ L+   T
Sbjct: 397 LKAGGVGLNLQ-AADTVILYDTDWNPQLDLQAQAR-----AHRIGQTREVRVFRLLTAGT 450

Query: 176 IDELVLQRLRTK 187
           I++ +      K
Sbjct: 451 IEQHIAAVAEEK 462


>gi|302308020|ref|NP_984796.2| AEL065Cp [Ashbya gossypii ATCC 10895]
 gi|299789257|gb|AAS52620.2| AEL065Cp [Ashbya gossypii ATCC 10895]
          Length = 1025

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 74  AYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             H + +LA LQ     G T +      +  +N G   L        G G+NL  G N +
Sbjct: 651 ISHKDPELAGLQYLRMDGTTNIAHRQALVDRFNNGPYHLFLLTTRVGGLGVNLT-GANRI 709

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + F   W+     Q  ER       + G KR V +Y L+   +I+E +  R   K  + +
Sbjct: 710 IIFDPDWNPSTDLQARERAW-----RIGQKRDVTIYLLMVAGSIEEKIYHRQIFKQFLTN 764

Query: 193 LLLNALKKE 201
            +L+  K++
Sbjct: 765 KVLSDPKQK 773


>gi|145603372|ref|XP_369370.2| hypothetical protein MGG_06094 [Magnaporthe oryzae 70-15]
 gi|145011615|gb|EDJ96271.1| hypothetical protein MGG_06094 [Magnaporthe oryzae 70-15]
          Length = 763

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 29/171 (16%)

Query: 43  DEEKHWKEVHD-------EKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQG 91
           ++     +V D        K  AL  I++    K +++ +I+   + S L  +Q+   + 
Sbjct: 572 EDNGRSVQVDDMDESAGSSKTDALLKILDGTLLKNSSSKVIIFSQWTSFLNVIQRQLEEH 631

Query: 92  RTLD------------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            T              +D    +   +    +L A    C  GLNL    + ++    WW
Sbjct: 632 TTYGYTRIDGTMKPVARDDAMRKLETDPDTRILLASLGVCSVGLNL-VTADTVILADSWW 690

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 Q I+R+      + G  R   V+ L+ ++T++E VL     K  +
Sbjct: 691 APAIEDQAIDRV-----HRLGQTRPTTVWRLVMEDTVEERVLDVQSEKRDL 736


>gi|47211690|emb|CAF91815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1369

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ ++ +       +++       L  L+          +    G 
Sbjct: 882  DGSALTKASGKLLLLQKMMRRLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGI 941

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 942  TGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 997

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  R V +Y  + + +++E + Q  + K  +
Sbjct: 998  --FSRAHRIGQNRKVMIYRFVTKASVEERITQVAKKKMML 1035


>gi|190346274|gb|EDK38320.2| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 669 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQG 726

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D           + +      + G  LNL    + +     WW+     Q ++
Sbjct: 727 SMSPQQRDNTIRHFMENTGVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 785

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R+      + G KR + +     +++I+  +++    K+ + +  +N+
Sbjct: 786 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMINATINS 828


>gi|255726014|ref|XP_002547933.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
 gi|240133857|gb|EER33412.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
          Length = 1063

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
             Q + Y  L  ++I+A N                +QL    N    +D           
Sbjct: 387 DMQVDWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 446

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++K  A  + +++    +  L  L+              G T  
Sbjct: 447 EHLVFNSGKMIILDKMLKKFKAEGSRVLIFSQMSRLLDILEDYCYFREYEYCRIDGSTSH 506

Query: 96  KDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 507 EDRIDAIDEYNSPDSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 563

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY  + +  I+E VL+R   K  +  L++ 
Sbjct: 564 ---AHRIGQKKQVKVYRFVTEMAIEEKVLERAAQKLRLDQLVIQ 604


>gi|154340309|ref|XP_001566111.1| DNA repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063430|emb|CAM39609.1| putative DNA repair protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 736

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 23/185 (12%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            + + T +  Q      Y + E          ++++  + +   A  +I+   F S +  
Sbjct: 484 TTLTSTQRIAQ------YKNNEFELSTKLRMVLRSIHDMQKNHPADKMIIFSQFTSFMDV 537

Query: 84  LQKAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNIL 132
           +  +  +             L      I+++   + I ++ A   + G GLNL    +++
Sbjct: 538 ISVSLDRYNIAFLRIDGTMSLSNRNAVIRQFQTSEHIKIVLASKTATGVGLNLTAANHVI 597

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V    WW+    +Q + R       + G K+ V+V   I  +TI++   +  + K    D
Sbjct: 598 V-VDPWWNPAIEEQAVHRC-----YRIGQKKPVYVTRFIIADTIEQYCYEICQRKKEFGD 651

Query: 193 LLLNA 197
            +L A
Sbjct: 652 AVLRA 656


>gi|302892613|ref|XP_003045188.1| SNF2 superfamily RAD5 protein [Nectria haematococca mpVI 77-13-4]
 gi|256726113|gb|EEU39475.1| SNF2 superfamily RAD5 protein [Nectria haematococca mpVI 77-13-4]
          Length = 1146

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 21/161 (13%)

Query: 49   KEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
                  K+ AL      +  +      +V   F S L+ ++ A  +              
Sbjct: 971  VNDSSAKVVALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTKANIKYLRLDGSMAQ 1030

Query: 95   DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  + E+ E K   +L     + G GLNL   G  +     WW      Q I+R+  
Sbjct: 1031 KARAAVLTEFTERKGFTVLLLSLRAGGVGLNLTSAG-RVFMMDPWWSFAVEAQAIDRV-- 1087

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G +  V V   + + +++E +L+    K  I   L
Sbjct: 1088 ---HRMGQESEVQVKRFVVKESVEERMLKVQERKKFIATSL 1125


>gi|312216637|emb|CBX96587.1| similar to DNA repair protein rad5 [Leptosphaeria maculans]
          Length = 1192

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

Query: 53   DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDP 98
              K++AL   ++K       A  +V   F S L  ++ A          F    +  +  
Sbjct: 1021 SAKMQALLGHLKKTRKVEKDAKTVVFSQFTSFLDLIEPALARDHIPFLRFDGSISQKQRA 1080

Query: 99   CTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + E+     P +L     + G GLNL    N +     WW      Q I+R+      
Sbjct: 1081 HILTEFTASPKPYVLLLSLRAGGVGLNLTC-ANKVFMMDPWWSFAVEAQAIDRV-----H 1134

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G +R V V   + Q +I+E +L+    K  I   L
Sbjct: 1135 RMGQEREVKVVRFVVQGSIEEKMLRIQERKKFIASSL 1171


>gi|260949761|ref|XP_002619177.1| hypothetical protein CLUG_00336 [Clavispora lusitaniae ATCC 42720]
 gi|238846749|gb|EEQ36213.1| hypothetical protein CLUG_00336 [Clavispora lusitaniae ATCC 42720]
          Length = 187

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 26/155 (16%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------------QGRT-LDKDPC 99
           +  L  + E++    ++V   F+S L  ++                    GR  L++   
Sbjct: 14  LSHLRALKEQSPGFQVVVFSQFSSYLDLIENELKLLDGGGETEFSVYKFDGRLNLNERDK 73

Query: 100 TIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +Q++     EGKI +L     + G GLNL    N       WW      Q I+RI    
Sbjct: 74  ILQQFVQKSEEGKITVLLLSLKAGGVGLNLTC-ANKAFMMDPWWSPSIEDQAIDRI---- 128

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G ++ V V   + +N+I+  +L+    K  +
Sbjct: 129 -HRIGQEQNVKVTRFVVKNSIETKMLKIQERKRMM 162


>gi|307197496|gb|EFN78730.1| Transcription termination factor 2 [Harpegnathos saltator]
          Length = 935

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 19/171 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN------SDLARLQKA----FPQGRTL 94
           +          +  ++ I+ + N   IIV+          S L  ++ A    F     +
Sbjct: 758 DDRVSSKMRTVLDMVKKIL-QTNDKLIIVSQWATLLNVIASHLEFVEGATFAKFTGNVAI 816

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              P  I  +N+      +L     + G GLNL  G N L+ F + W+ +   Q  +RI 
Sbjct: 817 KDRPAIIDSFNKSNSDPRILLLSLTAGGVGLNL-VGANHLLLFDIHWNPQLESQAQDRI- 874

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                + G K+ V++Y  I  NTI+E +      K  I   +L+  + + I
Sbjct: 875 ----YRFGQKKDVYIYKFICSNTIEERIKGLQEQKLAIAQNVLSGDRSKEI 921


>gi|326923687|ref|XP_003208066.1| PREDICTED: DNA excision repair protein ERCC-6-like, partial
           [Meleagris gallopavo]
          Length = 1498

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        ++        L  L+               
Sbjct: 828 DQFGYWKR--SGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFVRDRNYSYLRMDG 885

Query: 91  GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE K I +        G G+NL  G + ++ +   W+     Q  E
Sbjct: 886 TTTIASRQPLITRYNEDKSIFIFLLTTRVGGIGVNLT-GADRVIIYDPDWNPSTDTQARE 944

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 945 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|255713990|ref|XP_002553277.1| KLTH0D13046p [Lachancea thermotolerans]
 gi|238934657|emb|CAR22839.1| KLTH0D13046p [Lachancea thermotolerans]
          Length = 1540

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + LE I+ K  A    I++ +              L+ ++     G T   D   +  
Sbjct: 1012 KFELLERILPKFKATGHRILIFFQMTQIMDIMEDFLRLSGMKYLRLDGHTKSDDRTLLLN 1071

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1072 LFNDPNSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1125

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI +N+++E++L R   K  I   ++ A K
Sbjct: 1126 QKNEVRILRLITENSVEEVILDRAHKKLDIDGKVIQAGK 1164


>gi|196008861|ref|XP_002114296.1| hypothetical protein TRIADDRAFT_11949 [Trichoplax adhaerens]
 gi|190583315|gb|EDV23386.1| hypothetical protein TRIADDRAFT_11949 [Trichoplax adhaerens]
          Length = 616

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTI-- 101
           K+KALE ++ K   + + +++  +                +      G T  +    I  
Sbjct: 424 KMKALEALLIKFKKDGSKVLLFSYSVQLLNILETYIMCKGINYCRLDGNTRIEQRADIVR 483

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  N+ +I L      +   GLN     ++L+ F   W+     Q        R  + G 
Sbjct: 484 KFNNDPQISLCLISTKAGSLGLNFTGANSVLI-FDPNWNPAHDLQA-----QDRAYRIGQ 537

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +  V VY LI   TI+E++  R   K  + ++ +   K+ 
Sbjct: 538 RCDVRVYRLITSGTIEEVMYLRQIYKLQLANVAMQNSKER 577


>gi|157953042|ref|YP_001497934.1| hypothetical protein NY2A_B738L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123269|gb|ABT15137.1| hypothetical protein NY2A_B738L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 458

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 34/221 (15%)

Query: 8   QRELYCDLQGEN---IEAFNS----------ASKTVKCLQLANGA---VYYDEEKHWKEV 51
           ++ELY +L       ++A+N+            + ++  Q            +++ W E 
Sbjct: 223 EKELYDELVENGRLLLKAYNAYGDGEGRMKLLEQLMRMRQCVTNPQLLFMKSDDERW-EG 281

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT-I 101
           +  K+  L+  I+       I+  ++  ++  ++              G+T ++     +
Sbjct: 282 NYTKLNMLKREIQNNPIEKTIIFCNWIHEMISIENMLHSIGYDSVMLNGKTPNEQRDINV 341

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +NE   I        S G GLNLQ    + +  SL W+     Q I R       + G
Sbjct: 342 KRFNEDDNINFFIVQIESGGIGLNLQVASRVFI-NSLSWNATTEIQAIAR-----AHRIG 395

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + V V  LI  NT DE VL   + K  I   + +  + E
Sbjct: 396 QTKDVTVKRLIINNTFDEYVLNLQQKKLEIASEIFDDKRIE 436


>gi|150864667|ref|XP_001383600.2| helicase of the Snf2/Rad54 family [Scheffersomyces stipitis CBS 6054]
 gi|149385923|gb|ABN65571.2| helicase of the Snf2/Rad54 family [Scheffersomyces stipitis CBS 6054]
          Length = 1093

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE 106
            K L++IIE      +++   F   L  L++                +++     I E+ +
Sbjct: 928  KTLKLIIEGRQEK-VLIFSLFTQVLDILERVLTQFKYKFVRLDGATSVESRQDIIDEFYD 986

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + IP+      + G G+NL    N+++ F   ++  + +Q  +R       + G K+ V
Sbjct: 987  DETIPIFLLSTKAGGFGINLIAANNVII-FDQSFNPHDDKQAEDRC-----HRVGQKKEV 1040

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             VY LI  +T++E +L+    K  + D  ++A   E
Sbjct: 1041 TVYKLIVNDTVEENMLKLAENKLQL-DQTISAEGAE 1075


>gi|302917785|ref|XP_003052516.1| hypothetical protein NECHADRAFT_105975 [Nectria haematococca mpVI
           77-13-4]
 gi|256733456|gb|EEU46803.1| hypothetical protein NECHADRAFT_105975 [Nectria haematococca mpVI
           77-13-4]
          Length = 915

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT--------- 93
           +    + +   KI+ L  I++        IV   F S L  ++  F + R          
Sbjct: 708 DPHSPQVLASSKIRELIKILQAEVKEHKFIVFSQFTSMLDLVEPFFRKERFSFVRYDGSM 767

Query: 94  -LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D+   +++    + K  +L         GLNL     +++    +W+    +Q I+R+
Sbjct: 768 KNDEREESLRRLRSDPKTRILLCSLKCGSLGLNLTAATRVVIL-EPFWNPFVEEQAIDRV 826

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
                 +      V +Y L    T++E +L     K  + +  +   ++KE   +
Sbjct: 827 -----HRLTQTVDVIIYKLTVTKTVEERILDLQEKKRLLAEQAIEGGMRKEGFKL 876


>gi|312378128|gb|EFR24784.1| hypothetical protein AND_10400 [Anopheles darlingi]
          Length = 2623

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------- 90
            V  D+          K+  L+ ++ +       +++       L  L +   +       
Sbjct: 869  VNQDDVLQQLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSYQR 928

Query: 91   --GRTLDK-DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              G    +     +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 929  LDGSIKGELRRQALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 987

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 988  QAQAR-----AHRIGQKNQVNIYRLVTARSVEENIVERAKKKMVLDHLVIQRM 1035


>gi|255713090|ref|XP_002552827.1| KLTH0D02354p [Lachancea thermotolerans]
 gi|238934207|emb|CAR22389.1| KLTH0D02354p [Lachancea thermotolerans]
          Length = 1047

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 18/147 (12%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK 108
            L+ IIE      ++V   F   L  L+ A                ++     I ++ E +
Sbjct: 880  LKDIIE-HKKEKVLVFSLFTQMLDILEMALTTLNINFLRLDGSTQVNDRQALIDKFYEDE 938

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             IP+      + G G+NL    ++++ F   ++  + +Q  +R       + G  + V +
Sbjct: 939  SIPVFILSTKAGGFGINLVCANHVII-FDQSFNPHDDKQAADR-----SHRVGQTKTVHI 992

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLL 194
              L+ +N+I+E +LQ  + K  +   +
Sbjct: 993  TTLVTRNSIEEKILQLAKNKLALDTYI 1019


>gi|157953853|ref|YP_001498744.1| hypothetical protein AR158_C663L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068501|gb|ABU44208.1| hypothetical protein AR158_C663L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 458

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 34/221 (15%)

Query: 8   QRELYCDLQGEN---IEAFNS----------ASKTVKCLQLANGA---VYYDEEKHWKEV 51
           ++ELY +L       ++A+N+            + ++  Q            +++ W E 
Sbjct: 223 EKELYDELVENGRLLLKAYNAYGDGEGRMKLLEQLMRMRQCVTNPQLLFMKSDDERW-EG 281

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT-I 101
           +  K+  L+  I+       I+  ++  ++  ++              G+T ++     +
Sbjct: 282 NYTKLNMLKREIQNNPIEKTIIFCNWIHEMISIENMLHSIGYDSVMLNGKTPNEQRDINV 341

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +NE   I        S G GLNLQ    + +  SL W+     Q I R       + G
Sbjct: 342 KRFNEDDNINFFIVQIESGGIGLNLQVASRVFI-NSLSWNATTEIQAIAR-----AHRIG 395

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + V V  LI  NT DE VL   + K  I   + +  + E
Sbjct: 396 QTKDVTVKRLIINNTFDEYVLNLQQKKLEIASEIFDDKRIE 436


>gi|321262907|ref|XP_003196172.1| DNA repair protein RAD5 [Cryptococcus gattii WM276]
 gi|317462647|gb|ADV24385.1| DNA repair protein RAD5, putative [Cryptococcus gattii WM276]
          Length = 1359

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 65   KANAAPI----IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK-I 109
             A   P+    IV   + + L R+     +            T D+    I      K +
Sbjct: 1199 DAEGKPVVTKSIVFSQWTTMLDRIADMLDETNIRYARLDGTMTRDERSRAIDALRHKKNV 1258

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    +       +W+     Q I+RI      + G  R V    
Sbjct: 1259 EVLLVSTRAGGVGLNLTV-ASRCYLVDPYWNPSVESQAIDRI-----HRMGQTRPVVAIK 1312

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            L+ +++I+E + +  + K+ +  L L  + ++ +
Sbjct: 1313 LMIKDSIEEKLDKIQKKKAELAQLSLKNMSRKEL 1346


>gi|290983303|ref|XP_002674368.1| helicase-like protein [Naegleria gruberi]
 gi|284087958|gb|EFC41624.1| helicase-like protein [Naegleria gruberi]
          Length = 745

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 20/152 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEW 104
           +K LE +  K N   +++       L  L+        +            +    I+E+
Sbjct: 526 VKMLENL--KKNGHKVLIFSLMTRFLDVLEDYLECRGDMKYCRIDGSIAQTEREQKIKEF 583

Query: 105 NEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N+   +        + G G+NL    + ++ +   W+ +   Q  +R       + G KR
Sbjct: 584 NQDEDVFCFLLSTRAGGLGINLT-AADTVIIYDSDWNPQIDLQAQDRC-----HRIGQKR 637

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +V ++ L+   T+++ VLQ    K  ++ L++
Sbjct: 638 SVRIFRLLTLGTVEKKVLQTATKKLKLERLII 669


>gi|238879242|gb|EEQ42880.1| DNA repair protein RAD16 [Candida albicans WO-1]
          Length = 852

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  +Q    +          
Sbjct: 674 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSG 731

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D          ++ +      + G  LNL    + +     WW+     Q ++
Sbjct: 732 SMSPQQRDNTIKHFMENTEVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 790

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 791 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMIHATIN 832


>gi|328867898|gb|EGG16279.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1282

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
              K   ++ I+   KA+   +++       +  + + F           G T  ++   
Sbjct: 645 ASGKFDMMDQILLKMKASGHRVLIFTQMTEVINLMGEYFSLKEWDYLRLDGSTKPEERSR 704

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + EWN    P  +      + G G+NLQ   + ++ F   W+ +   Q  +R       
Sbjct: 705 LVVEWNRKDSPFFIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQMDLQAQDRC-----H 758

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G    V V+ LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 759 RVGQVNRVNVFRLISANSIEEKILERATDKLEIDAKIIQA 798


>gi|83770096|dbj|BAE60231.1| unnamed protein product [Aspergillus oryzae]
          Length = 777

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L      +  K      IV   F S L     RL++A      LD      +
Sbjct: 601 TSSTKIEMLVYELYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 660

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I  + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 661 RQKSIDFFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 715

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 716 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTINKDQGEAL 762


>gi|321461550|gb|EFX72581.1| hypothetical protein DAPPUDRAFT_227473 [Daphnia pulex]
          Length = 1801

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 76/224 (33%), Gaps = 40/224 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++       G    A    +  ++  +  N A     +++ +       + L+ 
Sbjct: 693 KNYTALRK-------GNKGSASTFVNIVMELKKCCNHAFLTKPQENERRYGASATEQLQQ 745

Query: 62  IIEKAN---------------AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK----- 96
           +I  +                   +++       L  +      + FP  R         
Sbjct: 746 LIRGSGKLVLLDKLLVRLRETGHRVLIFSQMVRMLDLIAEYLQLRHFPFQRLDGGIKGEL 805

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 806 RRKAMEHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 860

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 861 -AHRIGQKNQVNIYRLVTKASVEEDIVERAKRKMVLDHLVIQRM 903


>gi|290976692|ref|XP_002671073.1| predicted protein [Naegleria gruberi]
 gi|284084639|gb|EFC38329.1| predicted protein [Naegleria gruberi]
          Length = 998

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDP 98
              K + ++ ++EK N     +++   +   L  +       +                 
Sbjct: 717 SSVKAQLVKHLVEKCNEEGHRVLIFSQYTRMLDIIGHVLKSMKVKFNRIDGSVTRHQDRT 776

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+NE  KI        + G GLNL    + ++     ++    +Q ++R       
Sbjct: 777 QLVDEFNENEKIKCFILSSQAGGVGLNL-VSASRVIIVDANFNPSIDEQSVDRC-----Y 830

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G K  V VY LI+  TI+E + +R  +K+T+ 
Sbjct: 831 RIGQKENVIVYRLISAGTIEEYIYKRQVSKTTVS 864


>gi|224104242|ref|XP_002313369.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222849777|gb|EEE87324.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1748

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 83/233 (35%), Gaps = 37/233 (15%)

Query: 2    KQYHK--FQR---ELYCDLQGENIEAFNSASKTVKCLQLA----------NGAVYYDEEK 46
            KQY+K   +R   +L   ++G  +   N   +  KC               G +  ++  
Sbjct: 855  KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDISTNDSS 914

Query: 47   HWKEV--HDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF---------PQGRT 93
              + +     K+  L+ ++ + +     +++       L  + +             G T
Sbjct: 915  KLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDIIAQYMSLRGFQFQRLDGST 974

Query: 94   LDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     ++ +N              + G G+NL    + ++ F   W+ +   Q + R
Sbjct: 975  KAELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR 1033

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                   + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1034 -----AHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGR 1081


>gi|213404686|ref|XP_002173115.1| ISWI chromatin-remodeling complex ATPase ISW2 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001162|gb|EEB06822.1| ISWI chromatin-remodeling complex ATPase ISW2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 913

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           E   W +    K+  L+ ++ +      I+V   F   L  L+ A               
Sbjct: 736 EGTPWMQT--AKVLRLQKLLNEFKKDDRILVFSQFTQVLDILEFALKSMDVKYLRMDGST 793

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            ++     I  +  + K  L      + G G+NL    N+++ +   ++  +  Q  +R 
Sbjct: 794 PVETRQGLIDMFSTKPKYKLFLLSTKAGGFGINLT-AANVVIMYDCSFNPFDDLQAEDR- 851

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 + G  R V +Y L+ +NTIDE + +    K  ++  ++
Sbjct: 852 ----AHRVGQTRPVSIYRLVTENTIDENIQKLAFAKLALESSMV 891


>gi|68468819|ref|XP_721468.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
 gi|68469363|ref|XP_721196.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443104|gb|EAL02388.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443387|gb|EAL02669.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
          Length = 852

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  +Q    +          
Sbjct: 674 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSG 731

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D          ++ +      + G  LNL    + +     WW+     Q ++
Sbjct: 732 SMSPQQRDNTIKHFMENTEVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 790

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 791 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMIHATIN 832


>gi|320168818|gb|EFW45717.1| Rad54b protein [Capsaspora owczarzaki ATCC 30864]
          Length = 988

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 21/156 (13%)

Query: 54  EKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT----- 100
            K+ AL  I   I++     +++  ++   L  L+K      F   R     P       
Sbjct: 668 CKMAALAQILCTIKRDTTDRVVIVSNYTQTLDHLEKLCAAYEFSFARLDGSTPTAKRQPI 727

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N       +      + G GLNL  G   L+     W+     Q + R+      +
Sbjct: 728 VEAFNSKYSTDYVFLLSSKAGGVGLNL-VGACRLILVDTDWNPANDLQAMARVW-----R 781

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R V +Y ++   +IDE + QR  +K  +   +
Sbjct: 782 DGQTRTVHLYRMLLTGSIDEKIYQRQLSKQGLSVAV 817


>gi|302786754|ref|XP_002975148.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
 gi|300157307|gb|EFJ23933.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
          Length = 1017

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 20/171 (11%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFP 89
           Y   ++        K + L+ ++ K       +++       +  L+             
Sbjct: 632 YEPRDRDEIIRASGKFELLDRLLPKLQKTGHRVLLFSQMTRLMDLLEMYLTTRGFTYLRL 691

Query: 90  QGRTLDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    +Q +N    P  +      + G GLNLQ   + ++ F   W+ +  QQ
Sbjct: 692 DGTTKTEDRGKKLQMFNAEDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQ 750

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +R       + G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 751 AEDR-----AHRIGQKKEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|294658800|ref|XP_461131.2| DEHA2F17732p [Debaryomyces hansenii CBS767]
 gi|202953393|emb|CAG89514.2| DEHA2F17732p [Debaryomyces hansenii]
          Length = 1295

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 20/161 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPCT- 100
             K + L+ ++ K  A+   +++ +          D  R   ++     G T  +D    
Sbjct: 828 SGKFELLDRVLPKFKASGHRVLIFFQMTQVMNIMEDFLRWRDMKYLRLDGATKAEDRQDM 887

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++++N              + G GLNLQ   + ++ F   W+  +  Q        R  +
Sbjct: 888 LKDFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHR 941

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 942 IGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 982


>gi|328865462|gb|EGG13848.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1157

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 76/218 (34%), Gaps = 31/218 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVK-CLQL---ANGAVYYD-------EEKHWKEVH 52
           Y     + +  L G  ++  +   K +  C+QL    N    +D               +
Sbjct: 462 YKSLLTKDFEALHGIGVKGGSGKVKLLNICMQLRKACNHPYLFDGAEEQPYTTGEHIIDN 521

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
             K+  L+ ++ +     + +++       L  L+               G   +     
Sbjct: 522 SGKMVMLDRLLARLKQRGSRVLIFSQMARMLDILEDYMMYRDYKYCRIDGGTDSESRENN 581

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +N    ++        + G G+ L    +I+V F   W+ +   Q        R  +
Sbjct: 582 IETFNAPGSELFAFLLTTRAGGLGITL-NTADIVVLFDSDWNPQVDLQA-----QDRAHR 635

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY  + +++++E ++++   K  +   ++ 
Sbjct: 636 IGQTKPVTVYRFVTESSMEEKMVEKAEMKLHLDAAVIQ 673


>gi|322698671|gb|EFY90439.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1104

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 44   EEKHWKEVHDEKI-KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------- 91
              K  + +   KI +  +++  +A     IV   F S L  ++    +            
Sbjct: 881  SGKQTQVLASAKIREVTKILHAEAKEHKFIVFSQFTSMLDLVEPFLDKDGFEYARYDGSM 940

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  D++    +   +    +L         GLNL      ++    +W+    +Q I+R+
Sbjct: 941  KNDDREESLRRLREDQSTRVLLCSLKCGSLGLNLT-AATRVIIVEPFWNPFVEEQAIDRV 999

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
                  +      V VY L   +T++E ++     K  + +  +    KKE + +
Sbjct: 1000 -----HRLTQTVDVVVYKLTVADTVEERIIDLQNKKRELAEQTIEGGAKKEAMKL 1049


>gi|297461261|ref|XP_609360.4| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus]
          Length = 2048

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1052 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1111

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1112 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1167

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1168 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1205


>gi|297484148|ref|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus]
 gi|296479122|gb|DAA21237.1| chromodomain helicase DNA binding protein 5 [Bos taurus]
          Length = 2099

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1103 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1162

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1163 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1218

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1219 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1256


>gi|119498495|ref|XP_001266005.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
 gi|119414169|gb|EAW24108.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
          Length = 1405

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  ++     G T   D   + +
Sbjct: 848  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 907

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 908  LFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 961

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1000


>gi|328720228|ref|XP_001950291.2| PREDICTED: lymphoid-specific helicase-like [Acyrthosiphon pisum]
          Length = 759

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 16/138 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L  +IE+      ++   F     RL           +        ++ +  ++     
Sbjct: 563 QLMDVIEE-----FLMFRKF--SFTRLDGTM---SIQLRVDAMTTFNSDPECFIMMISTR 612

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++ F   W+ +   Q  +R       + G  + V VY   ++NTID
Sbjct: 613 AGGLGLNLT-SADTVILFDSDWNPQVDLQAQDRC-----HRMGQTKPVVVYRFCSKNTID 666

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L     K  ++ +++
Sbjct: 667 ERILNFATAKRKLEKMII 684


>gi|299471324|emb|CBN79280.1| CHROMODOMAIN HELICASE DNA BINDING [Ectocarpus siliculosus]
          Length = 2463

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 20/172 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----PQGRTLDK 96
            E+K     H  K+  L+ ++ +       +++   F   L  L+        P GR    
Sbjct: 1140 EDKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKIMLNILEDYLIASGIPYGRIDGS 1199

Query: 97   -----DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +      +        + G G+ L    +  + +   W+ +   Q   
Sbjct: 1200 IQGNLRQKAIDSFQAPDSDMFVMLLSTKAGGVGITLT-AADTCIIYDSDWNPQNDVQAQA 1258

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R       + G  ++V VY L+   T +  + +    K  +   +L++ + +
Sbjct: 1259 RC-----HRIGQTKSVKVYRLLVAKTYEMHMFKTASKKLGLDQAVLSSSRPQ 1305


>gi|145532411|ref|XP_001451961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419638|emb|CAK84564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1135

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 53   DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
              KI+ +  I++        ++   F   +  ++      +             +    +
Sbjct: 967  SSKIEKVMQILDAIPKNEKCVIFTQFIGMIQMIEFDLDNQKIKHLRLDGSMPQQERAEVL 1026

Query: 102  QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +  + +  +      + G GLNL    N ++    WW+    +Q IER+      + G
Sbjct: 1027 KTFKEDDEYRIFIISLKAGGVGLNLT-SANHVIMIDPWWNPAVEEQAIERV-----YRIG 1080

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +   VY LI + T++E +++    K  + +  +   ++ ++ +
Sbjct: 1081 QTKETHVYRLICKQTVEERMIKLHDVKKQLFESSIRTEERSSLRM 1125


>gi|311258360|ref|XP_003127576.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Sus
            scrofa]
          Length = 1824

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 977  DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1036

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1037 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1092

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1093 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1130


>gi|58259855|ref|XP_567340.1| DNA repair protein RAD5 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|134116468|ref|XP_773188.1| hypothetical protein CNBJ1830 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255809|gb|EAL18541.1| hypothetical protein CNBJ1830 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57229390|gb|AAW45823.1| DNA repair protein RAD5, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1359

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 65   KANAAPI----IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKI 109
             A   P+    IV   + + L R+     +            T D+    I     +  +
Sbjct: 1199 DAEGKPVVTKSIVFSQWTTMLDRIADMLDETNIRYARLDGTMTRDERSKAIDALKFKKNV 1258

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    +       +W+     Q I+RI      + G  R V    
Sbjct: 1259 EVLLVSTRAGGVGLNLTV-ASRCYLVDPYWNPSVESQAIDRI-----HRMGQTRPVVAIK 1312

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            L+ +++I+E + +  + K+ +  L L  + ++ +
Sbjct: 1313 LMIKDSIEEKLDKIQKKKAELAQLSLKNMSRKEL 1346


>gi|67525031|ref|XP_660577.1| hypothetical protein AN2973.2 [Aspergillus nidulans FGSC A4]
 gi|40744368|gb|EAA63544.1| hypothetical protein AN2973.2 [Aspergillus nidulans FGSC A4]
 gi|259486081|tpe|CBF83639.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
            AFUA_3G08400) [Aspergillus nidulans FGSC A4]
          Length = 1107

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + +   K+  L  ++ +   N   ++V   F   +  L+              G T 
Sbjct: 918  KNNEWMDSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTS 977

Query: 95   DKDPCTIQE-WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I + ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 978  VEDRQSIMDTFHENTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1031

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1032 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1073


>gi|157134600|ref|XP_001663323.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108870421|gb|EAT34646.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 1983

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  LE ++++       +++       L  L+          +    G T       I 
Sbjct: 1047 KLVLLEKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGFGYKYERIDGGITGTLRQEAID 1106

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1107 RFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1160

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1161 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1190


>gi|325118047|emb|CBZ53598.1| hypothetical protein NCLIV_033850 [Neospora caninum Liverpool]
          Length = 1613

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 38/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----KTVKCLQL---ANGAVYYD---------EEKHW 48
           K Q++LY D+  +N+E  N+ S          +QL    N    +D         E +H 
Sbjct: 458 KLQKKLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHM 517

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            E    K+  L+ ++ +  A  + +++       L  +               G T   +
Sbjct: 518 VEAA-GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTE 576

Query: 98  PCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N       L      + G G+NL    ++++ F   ++ +   Q ++R    
Sbjct: 577 RQERIDEFNAEGSSKFLFLLSTRAGGLGINL-ATADVVILFDSDFNPQMDLQAMDR---- 631

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V VY  +  +T++  +++R   K  +  L++ 
Sbjct: 632 -AHRIGQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQ 672


>gi|302902557|ref|XP_003048670.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
 gi|256729604|gb|EEU42957.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
          Length = 773

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +   +++   F + L  L+                  + +     I ++N + +  +   
Sbjct: 551 DDHKVLIFSQFTTQLDILEDYCRELRGWNVCRIDGSVSQESRRTQIADFNTDPEYKVFLL 610

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   ++ ++  Q  +R       + G  R V V+ L  ++
Sbjct: 611 STRAGGQGINL-ASADTVILFDSDFNPQQDLQAQDRC-----HRIGQTRPVVVFRLATKD 664

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T++E +L     K  ++ L++
Sbjct: 665 TVEESLLLSADAKRRLEKLVI 685


>gi|302791571|ref|XP_002977552.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
 gi|300154922|gb|EFJ21556.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
          Length = 1032

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 20/171 (11%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFP 89
           Y   ++        K + L+ ++ K       +++       +  L+             
Sbjct: 632 YEPRDRDEIIRASGKFELLDRLLPKLQKTGHRVLLFSQMTRLMDLLEMYLTTRGFTYLRL 691

Query: 90  QGRTLDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  +D    +Q +N    P  +      + G GLNLQ   + ++ F   W+ +  QQ
Sbjct: 692 DGTTKTEDRGKKLQMFNAEDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDQQ 750

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +R       + G K+ V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 751 AEDR-----AHRIGQKKEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|241948421|ref|XP_002416933.1| DNA repair protein RAD16-homologue, putative; RAD family
           ATP-dependent helicase, putative [Candida dubliniensis
           CD36]
 gi|223640271|emb|CAX44521.1| DNA repair protein RAD16-homologue, putative [Candida dubliniensis
           CD36]
          Length = 846

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 668 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFNTVKLSG 725

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D          ++ +      + G  LNL    + +     WW+     Q ++
Sbjct: 726 SMSPQQRDNTIKHFMENTEVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 784

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 785 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMIHATIN 826


>gi|302682272|ref|XP_003030817.1| hypothetical protein SCHCODRAFT_68280 [Schizophyllum commune H4-8]
 gi|300104509|gb|EFI95914.1| hypothetical protein SCHCODRAFT_68280 [Schizophyllum commune H4-8]
          Length = 761

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKAF-------PQGRTLDK 96
              KI+AL      + ++      IV   F + L     RLQ+A               +
Sbjct: 588 SSTKIEALVEELSALRQQDATTKSIVFSQFVNFLDLVAFRLQRAGFAVCRLEGTMSPQAR 647

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D           +P+      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 648 DATIKHFMTNVDVPVFLVSLKAGGVALNLTE-ASRVYLMDSWWNPAVEYQAMDRI----- 701

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +R V    L+ +++I+  ++Q    K+ + D  L+
Sbjct: 702 HRLGQRRPVQAIKLVVEDSIESRIVQLQEKKAAMVDATLS 741


>gi|109475885|ref|XP_001078944.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Rattus
            norvegicus]
          Length = 1951

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1013 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1072

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1073 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1128

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1129 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1166


>gi|24308089|ref|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Homo sapiens]
 gi|51701343|sp|Q8TDI0|CHD5_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 5;
            Short=CHD-5; AltName: Full=ATP-dependent helicase CHD5
 gi|19773960|gb|AAL98962.1|AF425231_1 chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56203111|emb|CAI19450.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56417878|emb|CAI19891.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|119591922|gb|EAW71516.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|148922387|gb|AAI46382.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
 gi|151555557|gb|AAI48804.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
 gi|261857536|dbj|BAI45290.1| Chromodomain-helicase-DNA-binding protein 5 [synthetic construct]
          Length = 1954

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1015 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1074

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1075 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1130

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1131 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168


>gi|312211271|emb|CBX91356.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1199

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEWN-EGKIPLL 112
           +N   +++  H    L  L+  F    T             ++    + ++N +    + 
Sbjct: 664 SNGDKVLIFSHSVRLLRLLKGLFDVYGTKYNFSYLDGSMKYEERSKAVADFNADANQFVF 723

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+     +++     W+     Q        R  + G  R V V+ L++
Sbjct: 724 LISTKAGGVGLNITSANKVVIM-DPNWNPAHDLQA-----QDRAYRIGQTRDVEVFRLVS 777

Query: 173 QNTIDELVLQRLRTKSTIQD 192
             T++E+V  R   K    +
Sbjct: 778 SGTVEEVVYARQIYKQQQAN 797


>gi|151941373|gb|EDN59744.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1131

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------A 87
            Y      W +    KI AL+ +++         +++   F   L  L+            
Sbjct: 938  YQLHNDEWMQ--SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLR 995

Query: 88   FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++     I ++ E K IP+      + G G+NL    N+++F       +    
Sbjct: 996  LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 1049

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              +R    R  + G  + V +  LI +++I+E + Q  + K  +   +    K + +
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 1106


>gi|330919879|ref|XP_003298794.1| hypothetical protein PTT_09611 [Pyrenophora teres f. teres 0-1]
 gi|311327831|gb|EFQ93101.1| hypothetical protein PTT_09611 [Pyrenophora teres f. teres 0-1]
          Length = 1239

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 18/166 (10%)

Query: 47   HWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQG-----------RTL 94
                    KI+ L  I+ +      +IV   F S L  ++    +            R  
Sbjct: 1003 RPSLTPSTKIRQLLAILSQETPSHKVIVFSQFTSMLDLIEPFLRRASYTYTRYDGSMRND 1062

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++    +  ++    +L         GLNL    + +V    +W+    +Q I+R+   
Sbjct: 1063 HREASLHKLRSDPHTRVLLCSLKCGSLGLNLT-AASRVVIMEPFWNPFVEEQAIDRV--- 1118

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +      V VY L  +++++E +L+    K  + +  +   K 
Sbjct: 1119 --HRLNQTVDVTVYRLSIRDSVEERILELQEAKRKLANAAIEGGKA 1162


>gi|225557592|gb|EEH05878.1| transcription termination factor 2 [Ajellomyces capsulatus G186AR]
          Length = 1092

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGR------ 92
            Y       K +    +  +E   +  + API  IV   + S L  ++ A           
Sbjct: 907  YEGPHTKTKALISHLLDTIEESKKAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTR 966

Query: 93   -----TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 TL +    I  + E   + +L A   + G GLNL  G  + +     ++     Q
Sbjct: 967  LDGTMTLKQRNAAIDAFREDDNVTILLATLGAGGVGLNLTAGSRVYIM-EPQYNPAAIAQ 1025

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             ++R+      + G  R V     I +++I+E + +  R K  + D+ LN  K
Sbjct: 1026 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELARKKQQMADMSLNRGK 1073


>gi|213405915|ref|XP_002173729.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
 gi|212001776|gb|EEB07436.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
          Length = 1108

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 17/150 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            +K L  + E+     +++   F + L  +             F    +       ++ + 
Sbjct: 945  LKHLRRVFEEHKDEKVVIFSQFTTFLDYISTLLHSQGIEHTRFDGSMSQIARANALEHFR 1004

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K   +L     + G GLNL    N +     WW      Q ++R+      + G ++A
Sbjct: 1005 DSKTSNVLIVSLKAGGVGLNLTC-ANHVYLMDPWWSWSVEAQALDRV-----HRLGQEKA 1058

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V   I +++++E +L+    K+ I   L
Sbjct: 1059 VHVTRFIIRDSVEERMLKIQERKNFIAGTL 1088


>gi|167385507|ref|XP_001737376.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165899842|gb|EDR26336.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 764

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 24/170 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVA-YHFNSDLARL----------QKAFPQGRT 93
            +      +  I+ ++ II K+    ++V+ Y    DL  +          +K F   R 
Sbjct: 511 NEESSNKFNITIQFIKEIIIKSKEKVVLVSNYTKTLDLFEMYFKQEEEYKQKKIFNYLRL 570

Query: 94  LDKDPC-----TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             K         +++ N+      +L     + G GLNL  G + L+ F   W+  + +Q
Sbjct: 571 DGKTSQKQRDIIVEKINDKSSNFNILLLSSKAGGVGLNL-IGCSRLILFDPDWNPAKDKQ 629

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + RI      + G ++   +Y ++   TI+E + QR   K+ I + ++ 
Sbjct: 630 AMARIW-----RDGQQKKAMIYRMLCTGTIEEKIYQRQLQKNQISESIIE 674


>gi|119498441|ref|XP_001265978.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119414142|gb|EAW24081.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 928

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+  C L   NI+  ++     V   + AN  V  D           KI+AL  I+
Sbjct: 712 QVIERQHKCPLCRANIDDTSTLVAPAVDLGESANDDVDADPNN-----PSSKIEALIKIL 766

Query: 64  EKANAAP---IIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKI 109
                AP    +V   + S L      LQ+       +D       +D  T +   + + 
Sbjct: 767 TAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARDASTYKFSKDPQC 826

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A  + C  GLNL    N  +    WW      Q ++R+      + G KR   V+ 
Sbjct: 827 KVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQKRETTVWR 880

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+ +NTI++ VL+   TK  +
Sbjct: 881 LVMENTIEDRVLEIQDTKRKL 901


>gi|2443887|gb|AAB71480.1| Similar to transcription factor gb|Z46606|1658307 and others
            [Arabidopsis thaliana]
          Length = 1272

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 68   AAPIIVAYHFNSDLARLQKA----FPQGRTLDKD------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+ +      Q R LD           +Q++N   ++ ++    
Sbjct: 1130 GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1189

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    ++L+   LWW+     Q I+R       + G  R V V     ++T+
Sbjct: 1190 KAASLGLNMVAACHVLML-DLWWNPTTEDQAIDR-----AHRIGQTRPVTVVRFTVKDTV 1243

Query: 177  DELVLQRL 184
            ++ +L   
Sbjct: 1244 EDRILALQ 1251


>gi|73956748|ref|XP_546747.2| PREDICTED: similar to chromodomain helicase DNA binding protein 5
            [Canis familiaris]
          Length = 1994

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1060 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1119

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1120 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1175

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1176 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1213


>gi|255553699|ref|XP_002517890.1| conserved hypothetical protein [Ricinus communis]
 gi|223542872|gb|EEF44408.1| conserved hypothetical protein [Ricinus communis]
          Length = 870

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEK--ANAAP 70
           +   +  +A  +++     + L  G    +         H  K++ALE ++    +    
Sbjct: 496 EPDKQRKDAEFASAVFGPDIDLVGGNAQTESFMGLSDVKHCGKMRALEKLMCSWASRGDK 555

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASC 119
           +++  +    L  L+K                  +     + ++N      +      + 
Sbjct: 556 LLLFSYSVRMLDILEKFVIRKGYSFSRLDGSTPTNLRQSMVDDFNSSPSKQVFLISTRAG 615

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    N +V F   W+     Q        R  + G KR V V+ L+A  + +EL
Sbjct: 616 GLGLNL-VSANRVVIFDPNWNPAYDLQA-----QDRSFRFGQKRHVVVFRLLAAGSFEEL 669

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V  R   K  + ++ ++ 
Sbjct: 670 VYSRQVYKQQLSNIAVSG 687


>gi|238498532|ref|XP_002380501.1| chromodomain helicase (Chd1), putative [Aspergillus flavus
           NRRL3357]
 gi|220693775|gb|EED50120.1| chromodomain helicase (Chd1), putative [Aspergillus flavus
           NRRL3357]
          Length = 1446

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L +    +G T  +           
Sbjct: 754 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIPAASRR 813

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 814 LAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 867

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 868 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 898


>gi|156403967|ref|XP_001640179.1| predicted protein [Nematostella vectensis]
 gi|156227312|gb|EDO48116.1| predicted protein [Nematostella vectensis]
          Length = 1552

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-C 99
               K + L+ I+ K   N   +++     S +  L+  F           G T  +D   
Sbjct: 970  ASGKFELLDRILPKLKRNKHRVLMFCQMTSLMTILEDYFNWKGFPYLRLDGTTKSEDRGQ 1029

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  +N    P  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1030 LLSLFNAKDSPYFVFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1083

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1084 RIGQEKEVRVLRLMTVNSVEEKILAAARYKLNVDEKVIQA 1123


>gi|326475388|gb|EGD99397.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1143

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             K W  ++  K+  L  +++   AN   I+V   F   +  L++             G+T
Sbjct: 950  NKEW--MNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKT 1007

Query: 94   LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 1008 SVEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 1062

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|317155731|ref|XP_001825326.2| chromodomain helicase (Chd1) [Aspergillus oryzae RIB40]
          Length = 1513

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L +    +G T  +           
Sbjct: 754 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIPAASRR 813

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 814 LAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 867

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 868 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 898


>gi|255940126|ref|XP_002560832.1| Pc16g04810 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585455|emb|CAP93151.1| Pc16g04810 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1488

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------P 98
               K+  L+ ++ K   +   +++       L  L +       + + LD         
Sbjct: 739 TSSGKMMLLDQLLRKLSVDGHRVLIFCQMVGMLNILSEYMEYRGYKYQRLDGTIPSAARR 798

Query: 99  CTIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N  G           + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 799 LAIEHYNAPGSTDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 852

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++TI+E V++R R K
Sbjct: 853 HRIGQTRPVSVYRLVSKDTIEEEVIERARNK 883


>gi|301776989|ref|XP_002923917.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like
            [Ailuropoda melanoleuca]
          Length = 1948

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1014 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1073

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1074 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1129

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1130 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1167


>gi|258564262|ref|XP_002582876.1| hypothetical protein UREG_07649 [Uncinocarpus reesii 1704]
 gi|237908383|gb|EEP82784.1| hypothetical protein UREG_07649 [Uncinocarpus reesii 1704]
          Length = 1123

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + ++  K++ L  +++K   N   ++V   F          L  LQ  F    G T 
Sbjct: 927  KNDEWMNSGKVEKLCELLKKFTENGDRVLVFSQFTMVMDILEHVLETLQIRFFRLDGTTS 986

Query: 95   DKDPCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I +  + +  IP+      + G G+NL    N ++ F   ++ ++  Q      
Sbjct: 987  VEDRQSILDAFYEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQDDIQA----- 1040

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1041 ENRAHRVGQTREVEVVRLVTKDTIEEQIYALGQTKLVLDQRV 1082


>gi|224093501|ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222852831|gb|EEE90378.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1108

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 19/146 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWN 105
           +  L+ +I +     +++       L  ++++            G T   D    + ++ 
Sbjct: 759 LSLLDNLIPE--GHNVLIFSQTRKMLNLIEESLVSNGYEFLRIDGTTKVTDRAKIVDDFQ 816

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           EG   P+        G GL L    + ++     W+     Q ++R       + G K+ 
Sbjct: 817 EGNGAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQKKD 870

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
           V VY L+   T++E + ++   K  +
Sbjct: 871 VVVYRLMTCGTVEEKIYRKQIFKGGL 896


>gi|238494326|ref|XP_002378399.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220695049|gb|EED51392.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 942

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 25/200 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+  C +    I   ++  +    +  +  AV  D +         KI+AL  I+ 
Sbjct: 725 QVIERQHKCPMCRAEITDTSTLVEPAVEMGESTEAVVADPD-----TPSSKIEALIKILT 779

Query: 65  K---ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIP 110
               A     +V   + S L  L+               +  +L +D  T +  ++    
Sbjct: 780 AQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARDNSTYRFSHDPNCK 839

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  + C  GLNL    N  +    WW      Q ++R+      + G  R   V+ L
Sbjct: 840 VLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQTRETTVWRL 893

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + +++I++ VL    TK  +
Sbjct: 894 VMEDSIEDRVLAIQETKRKL 913


>gi|118092751|ref|XP_421656.2| PREDICTED: similar to excision repair protein [Gallus gallus]
          Length = 1495

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQ 90
           D+  +WK     K+  +E +++        ++        L  L+               
Sbjct: 826 DQFGYWKR--SGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDG 883

Query: 91  GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+      I  +NE K I +        G G+NL  G + ++ +   W+     Q  E
Sbjct: 884 TTTIASRQPLITRYNEDKSIFIFLLTTRVGGIGVNLT-GADRVIIYDPDWNPSTDTQARE 942

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 943 RAW-----RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 989


>gi|293347835|ref|XP_002726667.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Rattus
            norvegicus]
          Length = 1927

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 989  DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1048

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1049 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1104

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1105 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1142


>gi|159126264|gb|EDP51380.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus A1163]
          Length = 1406

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  ++     G T   D   + +
Sbjct: 849  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 908

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 909  LFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 962

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 963  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1001


>gi|158300661|ref|XP_320523.4| AGAP012009-PA [Anopheles gambiae str. PEST]
 gi|157013268|gb|EAA00692.4| AGAP012009-PA [Anopheles gambiae str. PEST]
          Length = 2037

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  LE ++   K+    +++       L  L+          +    G T       I 
Sbjct: 1096 KLVLLEKMLRLLKSQGHRVLIFSQMTKMLDILEDFLEGLGYKYERIDGGITGSIRQEAID 1155

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    P         + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1156 RFNAPGAPQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1209

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1210 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1239


>gi|256272274|gb|EEU07259.1| Fun30p [Saccharomyces cerevisiae JAY291]
          Length = 1131

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------A 87
            Y      W +    KI AL+ +++         +++   F   L  L+            
Sbjct: 938  YQLHNDEWMQ--SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLR 995

Query: 88   FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++     I ++ E K IP+      + G G+NL    N+++F       +    
Sbjct: 996  LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 1049

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              +R    R  + G  + V +  LI +++I+E + Q  + K  +   +    K + +
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 1106


>gi|294657478|ref|XP_459783.2| DEHA2E10934p [Debaryomyces hansenii CBS767]
 gi|199432721|emb|CAG88022.2| DEHA2E10934p [Debaryomyces hansenii]
          Length = 1157

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 31/174 (17%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------------------AF 88
             K++ L+ +++  +      ++       L  L+K                        
Sbjct: 706 SGKLQVLKNLLQLWQMQGHRTLLFCQTKQMLDILEKFVTNLPSLNENGEEVRGTFNYLRM 765

Query: 89  PQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                + +    +  +NE K   +        G G+NL  G + ++ +   W+     Q 
Sbjct: 766 DGSTNIGRRQALVDTFNEDKQYHVFLLTTKVGGLGINLT-GADRVIIYDPDWNPSTDIQA 824

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ER       + G K+ + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 825 RERAW-----RLGQKKDITIYRLMTAGSIEEKIYHRQIFKTFLTNKILKDPKQR 873


>gi|190406667|gb|EDV09934.1| hypothetical protein SCRG_05653 [Saccharomyces cerevisiae RM11-1a]
 gi|259144692|emb|CAY77633.1| Fun30p [Saccharomyces cerevisiae EC1118]
          Length = 1131

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------A 87
            Y      W +    KI AL+ +++         +++   F   L  L+            
Sbjct: 938  YQLHNDEWMQ--SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLR 995

Query: 88   FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++     I ++ E K IP+      + G G+NL    N+++F       +    
Sbjct: 996  LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 1049

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              +R    R  + G  + V +  LI +++I+E + Q  + K  +   +    K + +
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 1106


>gi|157871612|ref|XP_001684355.1| DNA repair protein [Leishmania major strain Friedlin]
 gi|68127424|emb|CAJ05152.1| putative DNA repair protein [Leishmania major strain Friedlin]
          Length = 736

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 53  DEKIKA-LEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
             K++  L  I +     P   +I+   F S +  +  A  +             L    
Sbjct: 503 STKLRMVLRSIYDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRN 562

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+++   + I ++ A   + G GLNL    +++V    WW+    +Q + R       
Sbjct: 563 AVIRQFQTSEHIKIVLASKTATGVGLNLTAANHVVV-VDPWWNPAIEEQAVHRC-----Y 616

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+ V+V   I  +TI++   +  + K    D +L A
Sbjct: 617 RIGQKKPVYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|6319300|ref|NP_009383.1| Fun30p [Saccharomyces cerevisiae S288c]
 gi|401438|sp|P31380|FUN30_YEAST RecName: Full=Uncharacterized ATP-dependent helicase FUN30
 gi|171856|gb|AAC04938.1| Fun30p [Saccharomyces cerevisiae]
 gi|285810183|tpg|DAA06969.1| TPA: Fun30p [Saccharomyces cerevisiae S288c]
          Length = 1131

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------A 87
            Y      W +    KI AL+ +++         +++   F   L  L+            
Sbjct: 938  YQLHNDEWMQ--SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLR 995

Query: 88   FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++     I ++ E K IP+      + G G+NL    N+++F       +    
Sbjct: 996  LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 1049

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              +R    R  + G  + V +  LI +++I+E + Q  + K  +   +    K + +
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 1106


>gi|66358754|ref|XP_626555.1| SWI/SNF related transcriptional regulator ATpase [Cryptosporidium
            parvum Iowa II]
 gi|46227736|gb|EAK88656.1| SWI/SNF related putative transcriptional regulator ATpase
            [Cryptosporidium parvum Iowa II]
          Length = 1552

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 3    QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y + +++     DL    I+  + ++  ++  ++ N    + EE   ++        K 
Sbjct: 833  VYDQIKQKAVHSMDLSSGKIQYRSVSNTIMQLRKIVNHPYLFVEEYLIEDDDIFRVSCKF 892

Query: 57   KALEVIIEKA--NAAPIIVAYHFNS---------DLARLQKAFPQGR-TLDKDPCTIQEW 104
            + L+ ++ K       +++               D   ++     G  T+ +    + E+
Sbjct: 893  EVLDRMLPKLIRFRHKVLIFCQMTQLMDILGDFLDYRGIEHHRLDGTMTIQERKEKMDEF 952

Query: 105  NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N       +      + G GLNLQ   + ++ F   W+  +  Q       +R  + G K
Sbjct: 953  NSPDSEKFVFVLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QSRAHRMGQK 1006

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V V   ++ + ++ELVL+R + K  I   ++ A
Sbjct: 1007 NEVRVLRFVSISGVEELVLKRAQKKLEIDHKIIQA 1041


>gi|301607806|ref|XP_002933489.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 1708

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 715 GNRVLIFSQMVRMLDILAEYLKSRQFPFQRLDGSIKGEVRKQALDHFNAEGSEDFCFLLS 774

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 775 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 828

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +++R + K  +  L+   ++   K  +H 
Sbjct: 829 VEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHT 861


>gi|292622418|ref|XP_685699.4| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 1
            [Danio rerio]
          Length = 1953

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLFA 114
                +++       L  L+          +    G T       I  +N    P  +   
Sbjct: 1075 GGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLL 1134

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1135 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTKA 1188

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1189 SVEERITQVAKKKMML 1204


>gi|70998556|ref|XP_754000.1| RSC complex subunit (Sth1) [Aspergillus fumigatus Af293]
 gi|66851636|gb|EAL91962.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus Af293]
          Length = 1406

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++ +              L  ++     G T   D   + +
Sbjct: 849  KFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 908

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 909  LFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 962

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 963  QKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1001


>gi|317418651|emb|CBN80689.1| Chromodomain-helicase-DNA-binding protein 5 [Dicentrarchus labrax]
          Length = 1981

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T       I  +N    +      
Sbjct: 1022 EGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL 1081

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1082 STRAGGLGINL-ASADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRG 1135

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1136 SVEERITQVAKRKMML 1151


>gi|297736923|emb|CBI26124.3| unnamed protein product [Vitis vinifera]
          Length = 2266

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--AFPQGRTL--------DKDPCTIQ 102
            K++ L+ ++ K  A    ++        L  +++   + Q R L              I+
Sbjct: 1369 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLHWKQYRYLRLDGHTSGGDRGALIE 1428

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1429 QFNQPDSPYFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1482

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V V  L    T++E V      K  + +  + A
Sbjct: 1483 QKRDVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1519


>gi|224004522|ref|XP_002295912.1| ATP-dependent helicase [Thalassiosira pseudonana CCMP1335]
 gi|209585944|gb|ACI64629.1| ATP-dependent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 841

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 20/178 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF 88
             ++   + Y  +      ++   K+K L+  + K       ++V  +  + L  +Q+  
Sbjct: 388 LREMPGQSYYKSDGIMNDHLNLSGKMKTLDYCLRKYQKKRHRVLVFSYSTATLDLIQQHV 447

Query: 89  P---------QGRTLDKDPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                      G+T        + ++   + I +      + G GLNL    N ++ F +
Sbjct: 448 KTQGWTHLRLDGQTATSTRQALVDQFQRDQAIFVFLISTRAGGLGLNLT-AANKVIIFDV 506

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+    +Q        R  + G ++ V V  L+A+ TI+E +  R   K+ ++   L
Sbjct: 507 NWNPSYDEQA-----QDRSFRIGQEKNVEVLRLVARGTIEEQMYARQVYKTQLKKQTL 559


>gi|330799785|ref|XP_003287922.1| hypothetical protein DICPUDRAFT_55110 [Dictyostelium purpureum]
 gi|325082056|gb|EGC35551.1| hypothetical protein DICPUDRAFT_55110 [Dictyostelium purpureum]
          Length = 1271

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 31/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVK-----CLQLANGAVYYDEEKHWKEVH---- 52
           K Y   + + +    G  ++     +K +K       ++ N    + +E++  + +    
Sbjct: 516 KMYDLIKDKGFTA--GSGLDGNPKLAKGLKNTYVQLRKICNHPYLFYDEEYPIDDNLIRY 573

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTI 101
             K   L+ ++ K  A    +++       +  L         +     G T  ++   +
Sbjct: 574 AGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYRDFKYLRLDGSTKSEERGPL 633

Query: 102 -QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            Q +N    +  +      + G GLNLQ   + ++ F   W+ +   Q        R  +
Sbjct: 634 LQLFNAPNSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQMDLQA-----QDRAHR 687

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V  L+  ++++E +L R   K  +   ++ A
Sbjct: 688 IGQKQTVRVLRLVTLHSVEENILARANFKKELDKKIIQA 726


>gi|297682946|ref|XP_002819164.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like [Pongo
            abelii]
          Length = 2997

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|297299473|ref|XP_002805403.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like, partial
            [Macaca mulatta]
          Length = 2990

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1245 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1304

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1305 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1364

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1365 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1423

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1424 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1471


>gi|296226562|ref|XP_002758984.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like isoform 1
            [Callithrix jacchus]
 gi|296226564|ref|XP_002758985.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like isoform 2
            [Callithrix jacchus]
          Length = 2994

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|291388024|ref|XP_002710542.1| PREDICTED: chromodomain helicase DNA binding protein 7 [Oryctolagus
            cuniculus]
          Length = 2997

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|148673732|gb|EDL05679.1| mCG20155 [Mus musculus]
          Length = 2985

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1206 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1265

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1266 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1325

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1326 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1384

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1385 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1432


>gi|119607236|gb|EAW86830.1| chromodomain helicase DNA binding protein 7, isoform CRA_a [Homo
            sapiens]
 gi|119607239|gb|EAW86833.1| chromodomain helicase DNA binding protein 7, isoform CRA_a [Homo
            sapiens]
          Length = 3011

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1231 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1290

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1291 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1350

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1351 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1409

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1410 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1457


>gi|119607237|gb|EAW86831.1| chromodomain helicase DNA binding protein 7, isoform CRA_b [Homo
            sapiens]
          Length = 2996

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|54112403|ref|NP_060250.2| chromodomain-helicase-DNA-binding protein 7 [Homo sapiens]
 gi|148877246|sp|Q9P2D1|CHD7_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|119607240|gb|EAW86834.1| chromodomain helicase DNA binding protein 7, isoform CRA_d [Homo
            sapiens]
 gi|225000838|gb|AAI72443.1| Chromodomain helicase DNA binding protein 7 [synthetic construct]
          Length = 2997

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|114620586|ref|XP_519780.2| PREDICTED: chromodomain helicase DNA binding protein 7 [Pan
            troglodytes]
          Length = 3041

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1260 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1319

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1320 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1379

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1380 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1438

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1439 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1486


>gi|124487249|ref|NP_001074886.1| chromodomain-helicase-DNA-binding protein 7 [Mus musculus]
 gi|148877247|sp|A2AJK6|CHD7_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|123228216|emb|CAM16769.1| chromodomain helicase DNA binding protein 7 [Mus musculus]
 gi|123229796|emb|CAM25204.1| chromodomain helicase DNA binding protein 7 [Mus musculus]
          Length = 2986

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
            K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 1206 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1265

Query: 50   EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
            E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1266 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1325

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1326 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1384

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1385 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1432


>gi|302665258|ref|XP_003024241.1| hypothetical protein TRV_01591 [Trichophyton verrucosum HKI 0517]
 gi|291188288|gb|EFE43630.1| hypothetical protein TRV_01591 [Trichophyton verrucosum HKI 0517]
          Length = 1143

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             K W  ++  K+  L  +++   AN   I+V   F   +  L++             G+T
Sbjct: 950  NKEW--MNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKT 1007

Query: 94   LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 1008 SVEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 1062

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|225436589|ref|XP_002275100.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1764

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 51   VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTLDK-DP 98
            +   K+  L+ ++EK +     +++       L  L +             G T  +   
Sbjct: 931  LSSGKLVLLDKLLEKLHETNHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQ 990

Query: 99   CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N              + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 991  QAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----A 1044

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1045 HRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDHLVIQKLNAEGR 1091


>gi|224094755|ref|XP_002310223.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222853126|gb|EEE90673.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 754

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
            L+ A    Y+            K + L+ ++ +  A    +++   +   L  +   F 
Sbjct: 485 LLESAFDGSYFYPPVEQIVEQCGKFRLLDKLLNRLFALKHKVLIFSQWTKVLDIMDYYFS 544

Query: 90  Q----------GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           +             LD+    I+E+N    +  +      + G G+NL    +  + +  
Sbjct: 545 EKGFEVCRIDGSVNLDERKRQIEEFNDENSQYRVFLLSTRAGGLGINLT-SADTCILYDS 603

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +   Q ++R       + G  + V VY L    +I+  +L+R  +K  ++ +++
Sbjct: 604 DWNPQMDLQAMDRC-----HRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVI 656


>gi|124487025|ref|NP_001074845.1| chromodomain helicase DNA binding protein 5 isoform1 [Mus musculus]
          Length = 1952

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1017 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1076

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1077 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1132

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1133 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1170


>gi|66359910|ref|XP_627133.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo
            domain [Cryptosporidium parvum Iowa II]
 gi|46228555|gb|EAK89425.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo
            domain [Cryptosporidium parvum Iowa II]
          Length = 1673

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Q+ LY +L+       N   +  K        +    Y  +E   +     K   L+ I
Sbjct: 1010 LQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEIQYPSDESIVRVC--GKFVMLDSI 1067

Query: 63   IE--KANAAPIIVAYHFNSDLARLQ-----KAFP----QGRTLDKDPC-TIQEWNEGKIP 110
            +   +A    +++       L  L+     +  P     G TL +D   +++ +N    P
Sbjct: 1068 LPKLRAAGHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFNAENSP 1127

Query: 111  --LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G K+ V   
Sbjct: 1128 YFVFLLSTKAGGFGINLQ-SADTVILFDSDWNPQNDEQA-----QSRAHRIGQKKEVLTL 1181

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  +T++E ++     K     L++ +
Sbjct: 1182 RFVTPDTVEERIMTTAGIKLDKDALIIKS 1210


>gi|67515813|ref|XP_657792.1| hypothetical protein AN0188.2 [Aspergillus nidulans FGSC A4]
 gi|40746905|gb|EAA66061.1| hypothetical protein AN0188.2 [Aspergillus nidulans FGSC A4]
          Length = 1123

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNS------DLARLQKA---FPQGRT 93
                    K   L+ +I +        +I+   F+       DL  ++KA   F  GR 
Sbjct: 798 GQHIVDASCKFIVLQKMIRQYVGLENKKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRL 857

Query: 94  LDKDPCTIQ------EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +        N+ +  +      + G GLNL    +I++F    W+     Q+
Sbjct: 858 DGSTSSAWRNLSVFLFQNDPRYMVFLLSTRAGGEGLNL-VSSSIVIFLDDDWNP----QV 912

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + R   +R  + G  + V ++ + A+ T+++ + +R+  K+ + D ++
Sbjct: 913 M-RQAESRVHRIGQTQPVQIFRIHAKGTVEDQMRRRMDKKAYLADKVM 959


>gi|289617844|emb|CBI55421.1| unnamed protein product [Sordaria macrospora]
          Length = 1667

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------- 84
           NG+   +++         K+  L+ ++ K   +   +++       L  L          
Sbjct: 771 NGSTRREDQIKGLITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILGDYLRVRGYQ 830

Query: 85  QKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +              I  +N              + G G+NL    + ++ +   W+ +
Sbjct: 831 FQRLDGTIPAGPRRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQ 889

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              Q + R       + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 890 ADLQAMAR-----AHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 939


>gi|281346162|gb|EFB21746.1| hypothetical protein PANDA_013140 [Ailuropoda melanoleuca]
          Length = 1814

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 882  DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 941

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 942  TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 997

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 998  --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1035


>gi|224013864|ref|XP_002296596.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968948|gb|EED87292.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 101

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +DK    +  +N   K+        S G G+NL  G + +VF+   W+     
Sbjct: 1   RLDGATDVDKRQRLMDRFNTDTKVFCFILSTRSGGLGINLT-GADTVVFYDSDWNPAMDA 59

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q        R  + G  R V +Y ++ +++I+E +L + + K  +
Sbjct: 60  QA-----QDRAHRIGQTREVHIYRMVTEHSIEENILTKAKQKRNL 99


>gi|194208118|ref|XP_001492263.2| PREDICTED: chromodomain helicase DNA binding protein 5 [Equus
            caballus]
          Length = 1936

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 997  DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1056

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1057 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1112

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1113 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1150


>gi|326932279|ref|XP_003212247.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like, partial
            [Meleagris gallopavo]
          Length = 1949

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            + +       K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 990  DGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1049

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1050 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1105

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1106 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1143


>gi|326482383|gb|EGE06393.1| hypothetical protein TEQG_05396 [Trichophyton equinum CBS 127.97]
          Length = 1130

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             K W  ++  K+  L  +++   AN   I+V   F   +  L++             G+T
Sbjct: 937  NKEW--MNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKT 994

Query: 94   LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 995  SVEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 1049

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1050 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1091


>gi|307107791|gb|EFN56033.1| hypothetical protein CHLNCDRAFT_22847 [Chlorella variabilis]
          Length = 480

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIPLLFAH 115
               +++     + L  L     Q               D+     +   +    +    
Sbjct: 350 EGHKVLIFSQMTTMLDLLSSYLEQREVGHCRIDGSICWQDRQENMKRFNEDPDCKVFLLS 409

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    +  + +   W+  +  Q ++R       + G ++ V V  L   ++
Sbjct: 410 TRAGGLGINLT-AADTCIIYDSDWNPHQDLQAMDRC-----HRIGQQKPVLVMRLATAHS 463

Query: 176 IDELVLQR 183
           ++  +L+R
Sbjct: 464 VEGKMLRR 471


>gi|148237261|ref|NP_001090145.1| helicase-like transcription factor [Xenopus laevis]
 gi|80476497|gb|AAI08610.1| MGC131155 protein [Xenopus laevis]
          Length = 999

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 32/201 (15%)

Query: 29  TVKCLQLA-------NGAVYYDEEKHWKEVHDEKIKALE-VIIEKANA---APIIVAYHF 77
            ++  QL        + ++    ++ W  +   KI AL   ++E+         IV   F
Sbjct: 793 LLRLDQLVECPQEDLDSSINKKPDQKW--MSSTKISALMHSLVEQRRKDATIKSIVVSQF 850

Query: 78  NSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLN 124
            S L+ ++ A  +            T  K    IQ +         ++     + G GLN
Sbjct: 851 TSFLSLIEVALRESGFMFTRLDGSMTQKKRTEAIQSFQRPDAQSPTIMLLSLKAGGVGLN 910

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + +      W+    +Q  +R       + G  + V +   + +++++E +L+  
Sbjct: 911 LT-AASRVFLMDPAWNPAAEEQCFDRC-----HRLGQTKEVIITKFVVRDSVEENMLKIQ 964

Query: 185 RTKSTIQDLLLNALKKETIHV 205
             K  +      A K     +
Sbjct: 965 SKKRQLAAGAFGAKKSSASQI 985


>gi|50548883|ref|XP_501912.1| YALI0C16643p [Yarrowia lipolytica]
 gi|49647779|emb|CAG82232.1| YALI0C16643p [Yarrowia lipolytica]
          Length = 1085

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 19/169 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRT 93
               K    + +KAL  + +K      ++       L  L+  F                
Sbjct: 629 GDPAKSGKMQVVKALVDLWKK-QGHRTLLFCQTRQMLEILEDFFANMPDIKYLRMDGTTP 687

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+     L        G G+NL  G N ++ F   W+     Q  ER  
Sbjct: 688 ISKRQDMVDTYNKDTSYDLFLLTTRVGGLGVNLT-GANRVIIFDPDWNPSTDLQARERSW 746

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 747 -----RLGQKRNVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDAKQR 790


>gi|225677983|gb|EEH16267.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1030

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAH 115
           N   ++V  H    L  LQ  F              T D     +  +N + +  +    
Sbjct: 632 NGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFLIS 691

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  T
Sbjct: 692 TRAGGIGLNIT-SANKVVVVDPNWNPAFDLQA-----QDRAYRIGQSRDVEVFRLISAGT 745

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 746 IEEIVYARQIYKQQQAN 762


>gi|169606802|ref|XP_001796821.1| hypothetical protein SNOG_06450 [Phaeosphaeria nodorum SN15]
 gi|160707083|gb|EAT86281.2| hypothetical protein SNOG_06450 [Phaeosphaeria nodorum SN15]
          Length = 1598

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAH 115
               +++   F   L  ++          +              I ++N    PL      
Sbjct: 955  GHRVLIFSQFLDMLNIVEDFLDGMEMAYQRLDGQMGSLEKQKRIDQFNAPDSPLFAFLLS 1014

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     W+  +  Q I R       + G K  V  + L+ +++
Sbjct: 1015 TRAGGVGINL-ATADTVIILDPDWNPHQDLQAIAR-----AHRIGQKNKVLCFQLMTRSS 1068

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETI 203
            ++E ++Q  R K  +  +++  L  + I
Sbjct: 1069 VEEKIIQMGRKKMALDHVVVEQLDADDI 1096


>gi|94266483|ref|ZP_01290174.1| Helicase-like [delta proteobacterium MLMS-1]
 gi|93452898|gb|EAT03409.1| Helicase-like [delta proteobacterium MLMS-1]
          Length = 137

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A CG GLNL    + ++    WW+     Q  +R       + G +R V +Y L+ + +I
Sbjct: 41  APCGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQERPVTIYRLVTKGSI 94

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L     K  + + LL  
Sbjct: 95  EEKILALHGHKRDLAENLLRG 115


>gi|167837009|ref|ZP_02463892.1| helicase, Snf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 711

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 24/186 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLA 82
            +  ++ ++++  + Y  +++    V   K   L  + E   A P    +V   +     
Sbjct: 381 LTCALQNMRMSCNSTYLLDQETDHGV---KADELATLFESLFAQPEAKAVVFSQWTRTHE 437

Query: 83  RLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNI 131
            + +   +          G    + P  ++ + ++    +      +   GLNLQ+  + 
Sbjct: 438 IVIRRLKKLGIGYVSFHGGVPSARRPALLERFRDDPDCRVFL-STDAGSTGLNLQH-AST 495

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV   L W+    +Q I RI      + G ++ V +   +A+ TI+E +L  L  K ++ 
Sbjct: 496 LVNMDLPWNPAVLEQRIARI-----HRMGQRKPVRIINYVAKGTIEEGMLSVLAFKRSLS 550

Query: 192 DLLLNA 197
             +L+ 
Sbjct: 551 AGILDG 556


>gi|73981363|ref|XP_533028.2| PREDICTED: similar to chromodomain helicase DNA binding protein
           1-like [Canis familiaris]
          Length = 972

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 27/208 (12%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL- 59
           MK    F+ E+      + ++  N  S+  KC    +    ++ E     +    +    
Sbjct: 380 MKDLDAFESEM-----AKKVKLQNVLSQLRKC---VDHPYLFEGETVPFFLTLLFMNIFV 431

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGKI 109
             II  A    +++       L  LQ              G    ++    I+ + +  +
Sbjct: 432 ANII--AQGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPV 489

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+NL    + ++F    ++ +   Q   R       + G  ++V V  
Sbjct: 490 FVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQNKSVKVIR 543

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           LI ++T++E+V ++  +K  + + ++  
Sbjct: 544 LIGRDTVEEIVYRKAASKLQLTNAIIEG 571


>gi|45198479|ref|NP_985508.1| AFL040Wp [Ashbya gossypii ATCC 10895]
 gi|44984430|gb|AAS53332.1| AFL040Wp [Ashbya gossypii ATCC 10895]
          Length = 1086

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            QR+ Y  +  ++++A N ++             +QL               G  Y  +E
Sbjct: 384 MQRKWYKQILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 443

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
                    K+    +   K + + +++    +  L  L+              G T  +
Sbjct: 444 HLVYNSAKLKVLDKLLKKLKEDGSRVLIFSQMSRLLDILEDYCYFRGYEYCRIDGSTAHE 503

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D    I E+N       +      + G G+NL    +++V +   W+ +   Q ++R   
Sbjct: 504 DRIEAIDEYNAPDSRKFIFLLTTRAGGLGINLTT-ADVVVLYDSDWNPQADLQAMDR--- 559

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 560 --AHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 600


>gi|301620878|ref|XP_002939792.1| PREDICTED: DNA excision repair protein ERCC-6-like [Xenopus
           (Silurana) tropicalis]
          Length = 732

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +E +++        +++       L  L+                 T+      
Sbjct: 387 SGKLIVVEALLKIWHRQGHRVLLFTQSRQMLQILEVFVRSRCYSYLKMDGTTTIASRQPL 446

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++NE   + +        G G+NL  G N ++ +   W+     Q  ER       + 
Sbjct: 447 IAKYNEDPSLFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW-----RI 500

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 501 GQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 542


>gi|156052901|ref|XP_001592377.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980]
 gi|154704396|gb|EDO04135.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1505

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 25/178 (14%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQ 90
           D++         K+  L+ ++ K   +   +++       L  L           +    
Sbjct: 735 DDQLKGLIASSGKMMLLDRLLAKLKKDNHRVLIFSQMVKMLDILGDYLQLRGYQFQRLDG 794

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  +N              + G G+NL    + +V F   W+ +   Q +
Sbjct: 795 TVAAGPRRQAIDHFNAEDSNDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAM 853

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS-----TIQDLLLNALKKE 201
            R       + G K+ V +Y L+++ T++E +L+R R K      TIQ  + +  KKE
Sbjct: 854 AR-----AHRIGQKKPVSIYRLVSKETVEEEILERARNKLMLEFITIQRGVTDKEKKE 906


>gi|242077806|ref|XP_002448839.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
 gi|241940022|gb|EES13167.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
          Length = 1042

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------P 89
            D+     +    K+  +  ++         +++       L  +Q+A            
Sbjct: 680 DDDALQVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLNLIQEAIILEGYEFLRID 739

Query: 90  QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + +    ++++ EG+  P+        G GL L     ++V     W+     Q +
Sbjct: 740 GTTKVSERERIVKDFQEGRGAPIFLLTTQVGGLGLTLTKAARVIV-VDPAWNPSTDNQSV 798

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +R       + G  + V VY L+   TI+E + +  
Sbjct: 799 DR-----AYRIGQTKNVIVYRLMTSATIEEKIYKLQ 829


>gi|322710049|gb|EFZ01624.1| chromatin remodeling complex subunit (Chd3), putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1671

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCT----- 100
               K+  LE ++ K       +++   F   L  ++        Q R LD    +     
Sbjct: 1100 ASAKLLLLEQMLPKLKERGHRVLIFSQFLQQLDIVEDFLAGIGYQYRRLDGQLSSLEKQR 1159

Query: 101  -IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +NE    I        + G G+NL    + ++     ++  +  Q + R       
Sbjct: 1160 RIDAFNEPGSAIFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AH 1213

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K+ V  + L+ ++T++E ++Q  + K  +   L+ ++  + I
Sbjct: 1214 RIGQKQKVLCFQLMTKDTVEERIMQIGKKKMALDHALIESMDDDEI 1259


>gi|50303907|ref|XP_451901.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641033|emb|CAH02294.1| KLLA0B08327p [Kluyveromyces lactis]
          Length = 1534

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPCTI-Q 102
            K + LE I+ K  A    +++ +          D  R   ++     G T   D   +  
Sbjct: 1006 KFELLERILPKFKATGHRVLIFFQMTQVMDIMEDFLRYLDMKYLRLDGHTKSDDRTALLN 1065

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N              + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1066 TFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIG 1119

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K  V +  LI  N+++E +L +   K  I   ++ A K
Sbjct: 1120 QKNEVRILRLITDNSVEEAILDKAHAKLDIDGKVIQAGK 1158


>gi|164427331|ref|XP_963868.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
 gi|157071698|gb|EAA34632.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
          Length = 1664

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------- 84
           NG+   +++         K+  L+ ++ K   +   +++       L  L          
Sbjct: 768 NGSTRREDQIKGLITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVKMLDILGDYLRVRGYQ 827

Query: 85  QKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +              I  +N              + G G+NL    + ++ +   W+ +
Sbjct: 828 FQRLDGTIPAGPRRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQ 886

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              Q + R       + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 887 ADLQAMAR-----AHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 936


>gi|302823493|ref|XP_002993399.1| hypothetical protein SELMODRAFT_40953 [Selaginella moellendorffii]
 gi|300138830|gb|EFJ05584.1| hypothetical protein SELMODRAFT_40953 [Selaginella moellendorffii]
          Length = 738

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 38  GAVYYDEE--KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           G +  DE         +  K+ AL+ ++ K  +    +++  +    L  L+K       
Sbjct: 403 GGIQPDESFLGLSDSQNCGKMLALKNLLSKWTSQGDKVLLFSYSVRMLGILEKFLIRRGY 462

Query: 87  ---AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     ++     + E+N    K  +      + G GLNL    N +V F   W+ 
Sbjct: 463 CFCRLDGSTPMNARQGIVDEFNTSPSKQVVFLISTRAGGLGLNL-VSANRVVVFDPNWNP 521

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q        R  + G KR V V+ L+A  +++EL+  R   K  + +L +  
Sbjct: 522 AQDLQA-----QDRSFRFGQKRHVTVFRLLAAGSLEELIYTRQIYKQQLFNLAVTG 572


>gi|113678140|ref|NP_001038323.1| chromodomain helicase DNA binding protein 4 [Danio rerio]
 gi|94732824|emb|CAK04973.1| novel protein similar to vertebrate chromodomain helicase DNA binding
            protein 4 (CHD4) [Danio rerio]
          Length = 1929

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 20/153 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
               K+  L+ ++ K       +++       L  L+          +    G T      
Sbjct: 1033 SSGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQE 1092

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N    P  +      + G G+NL    + +V +   W+     Q       +R  
Sbjct: 1093 AIDRFNAPGAPQFVFLLSTRAGGLGINL-ATADTVVIYDSDWNPHNDIQA-----FSRAH 1146

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1147 RIGQNKKVMIYRFVTKASVEERITQVAKKKMML 1179


>gi|323449444|gb|EGB05332.1| hypothetical protein AURANDRAFT_31163 [Aureococcus anophagefferens]
          Length = 281

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           ARL  + P G         +  +N       +      + G GLNL  G + L+     W
Sbjct: 176 ARLDGSTPAGE----RQGLVNAFNRPRSDAFVFLLSTRAGGCGLNL-VGASRLLLLDPDW 230

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +    +Q + R+      + G  R V VY L+   T+DE +  R   K  + D ++
Sbjct: 231 NPAADEQAMARVW-----RDGQTRPVHVYRLLGAGTVDEKIFMRQLGKHDVNDGVV 281


>gi|255726892|ref|XP_002548372.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134296|gb|EER33851.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1066

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 49   KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
            K +   KI  L+ I++K       I++   F   L  L+K              G  +D+
Sbjct: 886  KYLDSGKIIELKKILDKTTKKGEKILIFSLFTQVLDILEKVLSLFDLKFVRLDGGTKVDE 945

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               TI  +NE   IP+      + G G+NL    N+++ F   ++  + +Q  +R     
Sbjct: 946  RQDTIDIFNEDSTIPIFLLSTKAGGFGINLVAANNVII-FDQSFNPHDDKQAEDR----- 999

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G K+ V V+ +I   T+++ +L     K  +   +
Sbjct: 1000 AHRVGQKKEVTVFKMITNKTVEKNMLLLAENKLALDKKI 1038


>gi|301097967|ref|XP_002898077.1| chromodomain protein, putative [Phytophthora infestans T30-4]
 gi|262105438|gb|EEY63490.1| chromodomain protein, putative [Phytophthora infestans T30-4]
          Length = 1004

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
                K+  L+ ++ +       +++   F   L  +Q      R          T ++ 
Sbjct: 647 VDTSGKLVLLDKLLPRLKETGHRVLIFSQFKIMLDIIQDYLALRRYNCERIDGNITGNER 706

Query: 98  PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +   +    ++     + G G+NL    + ++ +   W+ +   Q   R     
Sbjct: 707 QSAIDRFCREDSNSFIMLLSTRAGGVGINLT-AADTVIIYDSDWNPQNDLQAQARC---- 761

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G K++V +Y L+   T +  +  +   K  +   +L  +K +
Sbjct: 762 -HRIGQKKSVKIYRLLTAKTYELHMFHKASLKLGLDQAVLGGIKSD 806


>gi|196234384|ref|ZP_03133212.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
 gi|196221576|gb|EDY16118.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
          Length = 897

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 21/165 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL-------- 94
              +  +  K++ L  ++    A P   IIV   + + L  ++      R          
Sbjct: 610 DKTEPGYSSKLERLGELLAALCAEPERKIIVFSEWTTMLDLIETQLKNLRAKFVRLDGSV 669

Query: 95  --DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    + E+    +  +      +   GLNLQ   + ++   L W+    +Q I R 
Sbjct: 670 PQARRKQLVAEFQDNPQCRVFLT-TNAGSTGLNLQ-AADTVINVDLPWNPALLEQRIAR- 726

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G KR V VY  + + TI+E +L  L  K  +   +L+
Sbjct: 727 ----AHRMGQKRKVHVYLFVTEKTIEENLLATLGAKHELAGAVLD 767


>gi|254582196|ref|XP_002497083.1| ZYRO0D15026p [Zygosaccharomyces rouxii]
 gi|238939975|emb|CAR28150.1| ZYRO0D15026p [Zygosaccharomyces rouxii]
          Length = 1216

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 20/183 (10%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            LQ   G V  +     K +   K+  +  ++EK++   I+V   F +     ++   +  
Sbjct: 1025 LQGTRGPVMENLVPSTKMLQCMKL--VRNVVEKSDFEKILVFSQFTTFFDLFEQFLSKDL 1082

Query: 91   --------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    G    +    I  + + E    +L     +   GL L    ++++    +W+
Sbjct: 1083 QVSYLKYTGSMNSQQRSDIISRFYRESDKRVLLISMKAGNSGLTLTCANHVII-VDPFWN 1141

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                +Q  +R       +    R VFV+ L  +N++++ + +  + K  + D  ++  K 
Sbjct: 1142 PFVEEQAQDRC-----YRISQTREVFVHRLFIKNSVEDRIAELQKRKRDMVDAAMDPSKM 1196

Query: 201  ETI 203
            + I
Sbjct: 1197 DGI 1199


>gi|159478845|ref|XP_001697511.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas reinhardtii]
 gi|158274390|gb|EDP00173.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas reinhardtii]
          Length = 2000

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 21/146 (14%)

Query: 65   KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKD-PCTIQEWNEGKIP---- 110
            +A    +++   F   L  L+              G    ++    I  ++         
Sbjct: 982  RAEGKRVLIFSQFVMMLNVLEDYCTLMGYPVERIDGSIKGRERQQAIDRFSAADADQDKA 1041

Query: 111  -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+ L    +  + +   W+ +   Q + R       + G  + V VY 
Sbjct: 1042 FVFLLSTRAGGQGITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQTKEVTVYR 1095

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI+ +T +  +      K  + + +L
Sbjct: 1096 LISADTYEMALFSSASRKYGLDEAVL 1121


>gi|221128249|ref|XP_002153956.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 541

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
           +   KIK L+ ++ +       +++   F   L  L++     +            ++  
Sbjct: 386 LDSGKIKQLDKLLPELKEKNDRVLLFSQFVIVLDILEEYLKIRKIKYLRLDGSTKGNERQ 445

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N   +I +      + G G+NL    N +V   + ++    +Q  +R       
Sbjct: 446 ELIDKFNHNEEIFIFLLSTRAGGLGINLTT-ANTVVLHDIDFNPYNDKQAEDRC-----H 499

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G  R V VY  I ++T++E +L     K  ++  
Sbjct: 500 RLGQTRQVTVYKFIGKDTVEENILTCGERKLQLEKS 535


>gi|170085493|ref|XP_001873970.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164651522|gb|EDR15762.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1313

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
              +V   + + L +++ A                  D+         +    +L     +
Sbjct: 1148 KTVVFSQWTTMLDKIEDALEVAGIRYDRLDGTMKRDDRTKAMDALKTDPGCEVLLVSLKA 1207

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL      +     +W+     Q ++RI      + G  R V    LI +N+I+ 
Sbjct: 1208 GGVGLNLT-AAQRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVTTVKLIIENSIEA 1261

Query: 179  LVLQRLRTKSTIQDLLL 195
             +L+  + K+ + ++ L
Sbjct: 1262 RLLEVQKKKTALANMTL 1278


>gi|189458814|ref|NP_083492.2| chromodomain helicase DNA binding protein 5 isoform 2 [Mus musculus]
          Length = 1915

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1017 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1076

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1077 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1132

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1133 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1170


>gi|123248483|emb|CAM23902.1| chromodomain helicase DNA binding protein 5 [Mus musculus]
          Length = 1946

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1017 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1076

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1077 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1132

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1133 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1170


>gi|5917755|gb|AAD56023.1|AF181826_1 chromodomain helicase DNA binding protein 1 [Gallus gallus]
          Length = 981

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 489 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 548

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 549 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGPKKQVNIYRLVTKGS 602

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 603 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 635


>gi|45190977|ref|NP_985231.1| AER375Cp [Ashbya gossypii ATCC 10895]
 gi|44984045|gb|AAS53055.1| AER375Cp [Ashbya gossypii ATCC 10895]
          Length = 1288

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQL---ANGAVYYDEEKHWKEVH---- 52
           + Y +  +     +      A     K    K +QL    N    +DE +          
Sbjct: 711 QLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPTRTNS 770

Query: 53  ------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLD 95
                   K + L+ ++ K  A    +++ +     +           L+     G T  
Sbjct: 771 SLLYRVSGKFELLDRVLPKFKATGHRVLMFFQMTQVMDIMEDFLQMKNLKYMRLDGATKA 830

Query: 96  KDPC-TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    +  +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 831 EERTGMLNAFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 884

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 885 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 931


>gi|328354133|emb|CCA40530.1| hypothetical protein PP7435_Chr4-0362 [Pichia pastoris CBS 7435]
          Length = 689

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 17/139 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDK--DPCTIQ 102
             K + L  I+++  A   I+   F   LA L+        K      T+ +     T++
Sbjct: 550 SAKSERLLEILKRDPARKTIIFSQFTKLLATLKPFLTKNGFKCVLYEGTMTRAMRDTTLK 609

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+NE  +  +L         GLNL    N +V +  WW+ +   Q I+R+      + G 
Sbjct: 610 EFNENPETTVLLCSLKCGAIGLNLTI-ANRVVIYDPWWNPQVEDQAIDRV-----YRFGQ 663

Query: 162 KRAVFVYYLIAQNTIDELV 180
            + V VY LI +++++E +
Sbjct: 664 TKEVDVYRLIIKDSVEENI 682


>gi|308491646|ref|XP_003108014.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
 gi|308249961|gb|EFO93913.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
          Length = 1375

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DKDPCTIQ 102
            K++ L+ I+ K  A    +++ +   S +   +              G T  D+    + 
Sbjct: 850  KLELLDRILPKLKATGHRVLMFFQMTSMMTIFEDYLNFRNHTYLRLDGSTKPDERGDLLT 909

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    K  L      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 910  LYNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIG 963

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 964  QKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1002


>gi|148682990|gb|EDL14937.1| mCG131426 [Mus musculus]
          Length = 1955

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1026 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1085

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1086 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1141

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1142 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1179


>gi|259489604|tpe|CBF90013.1| TPA: ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 648

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNS------DLARLQKA---FPQGRT 93
                    K   L+ +I +        +I+   F+       DL  ++KA   F  GR 
Sbjct: 323 GQHIVDASCKFIVLQKMIRQYVGLENKKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRL 382

Query: 94  LDKDPCTIQ------EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +        N+ +  +      + G GLNL    +I++F    W+     Q+
Sbjct: 383 DGSTSSAWRNLSVFLFQNDPRYMVFLLSTRAGGEGLNL-VSSSIVIFLDDDWNP----QV 437

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + R   +R  + G  + V ++ + A+ T+++ + +R+  K+ + D ++
Sbjct: 438 M-RQAESRVHRIGQTQPVQIFRIHAKGTVEDQMRRRMDKKAYLADKVM 484


>gi|194744638|ref|XP_001954800.1| GF18453 [Drosophila ananassae]
 gi|190627837|gb|EDV43361.1| GF18453 [Drosophila ananassae]
          Length = 1056

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               K+  +  I++    K+     IV   + S L  L+                  +   
Sbjct: 883  PSSKMLKVMEILKTSILKSKDDKAIVVSQWTSVLDILRDHLEHAGLPTLSLNGTIPVKNR 942

Query: 98   PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N       +L     + G GLNL  G N L+   L W+ +   Q  +RI    
Sbjct: 943  QDIVNQFNNRQSDKRILLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLEAQAQDRI---- 997

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ V +Y  +  +T+++ +      K  + + +L  
Sbjct: 998  -YRVGQKKDVIIYKFMCADTVEQRIKALQDKKLELANGVLTG 1038


>gi|94265886|ref|ZP_01289615.1| Helicase-like [delta proteobacterium MLMS-1]
 gi|93453581|gb|EAT03980.1| Helicase-like [delta proteobacterium MLMS-1]
          Length = 137

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A CG GLNL    + ++    WW+     Q  +R       + G +R V +Y L+ + +I
Sbjct: 41  APCGTGLNLT-AADYVIHLDPWWNPAVEDQASDR-----AHRIGQERPVTIYRLVTKGSI 94

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L     K  + + LL  
Sbjct: 95  EEKILALHGHKRDLAENLLRG 115


>gi|326520307|dbj|BAK07412.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1148

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-------- 88
             A+  DEE   K +    +  L  ++E+     ++V       L  +Q+A         
Sbjct: 782 GEALQVDEEVSCKIIF--IMSLLRKLLEE--GHHVLVFSQTRKMLNLIQEAILLEGYKFL 837

Query: 89  --PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  + +    ++++ EG    +        G GL L     ++V     W+     
Sbjct: 838 RIDGTTKIAERERIVKDFQEGPGAQIFLLTTQVGGLGLTLTKAARVIV-VDPAWNPSTDS 896

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           Q ++R       + G  + V VY L+   TI+E + +    K  +
Sbjct: 897 QSVDR-----AYRIGQTKDVIVYRLMTSGTIEEKIYKMQVLKGAL 936


>gi|302406098|ref|XP_003000885.1| 5-aminolevulinate synthase [Verticillium albo-atrum VaMs.102]
 gi|261360143|gb|EEY22571.1| 5-aminolevulinate synthase [Verticillium albo-atrum VaMs.102]
          Length = 1673

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCTIQ 102
            K+K L  I+++   +   +++       +  L   F Q         G TL       ++
Sbjct: 1176 KVKVLIAILDECRKHKEKVLIFSQSIPTIDWLSTLFQQQQRPYSRLTGDTLPSIRQSMVK 1235

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +NEG   +      + G GLN+  G + +V F   ++    QQ I R       + G  
Sbjct: 1236 NFNEGDNEIFVISTQAGGQGLNIT-GASRVVIFDFRFNPIAEQQAIGR-----AYRIGQS 1289

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V VY  ++  T ++ +  +   K  +   +++
Sbjct: 1290 KPVVVYRFVSGGTYEQHLYNKAVWKMQLASRVVD 1323


>gi|325092395|gb|EGC45705.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H88]
          Length = 1181

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    ++   F          L  LQ  F    G T 
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|240281108|gb|EER44611.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1181

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    ++   F          L  LQ  F    G T 
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|255656168|ref|ZP_05401577.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 1013

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 24/184 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIK 57
            K Y  + +++   ++ +N++       S   K  QL      V  D  K   ++    ++
Sbjct: 837  KIYSVYSKDIQDKIKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYNKKSSKIETC-LE 895

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG 107
             L   I + +   I++   F S L  + K   + +             +    + E+N  
Sbjct: 896  ILRDSINENH--KILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+     Q  +R       + G K+   
Sbjct: 954  IDKKVFLISLKAGGTGLNLT-SADMVIHFDPWWNPSVENQASDR-----AHRFGTKKFST 1007

Query: 167  VYYL 170
             Y +
Sbjct: 1008 SYKI 1011


>gi|225562463|gb|EEH10742.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1181

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    ++   F          L  LQ  F    G T 
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|238880563|gb|EEQ44201.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 864

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 74/190 (38%), Gaps = 28/190 (14%)

Query: 28  KTVKCLQLANG-AVYYD----EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
           K ++   + N   +YY+    ++      +  K + L  ++    ++   +++   F   
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQAEVIR-NSAKFQVLNQLLPPLLSSGHKVLIFAQFTKV 639

Query: 81  LARLQKAFPQGRTLD--------------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           L  L+    +   L               +D    Q  N  K  +      + G G+NL 
Sbjct: 640 LDLLEDWLEESPLLHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLLSTRAGGLGINL- 698

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++     W+ +   Q I+R+      + G    V ++  + +++I+E+++ R  +
Sbjct: 699 VAADTVILMDNDWNPQMDLQAIDRV-----HRIGQINPVKIFRFVIKDSIEEVLISRSGS 753

Query: 187 KSTIQDLLLN 196
           K  ++ L++ 
Sbjct: 754 KRFLERLVIQ 763


>gi|326924270|ref|XP_003208353.1| PREDICTED: DNA excision repair protein ERCC-6-like [Meleagris
           gallopavo]
          Length = 1273

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
           H   V  +  K L  IIE+     ++ +  F   + R+         L +    I  +  
Sbjct: 465 HRTLVFSQSRKML-DIIER-----VLSSRRFK--IMRIDG---TVTHLTEREKRINAFQS 513

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            K   +        G G+ L    N +V F   W+     Q ++R       + G K  V
Sbjct: 514 NKDYSVFLLTTQVGGVGITLT-AANRVVIFDPSWNPATDAQAVDR-----AYRIGQKENV 567

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
            +Y LI   T++E + +R   K ++
Sbjct: 568 VIYRLITCGTVEEKIYRRQVFKDSL 592


>gi|241074609|ref|XP_002408725.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492547|gb|EEC02188.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1216

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 35/204 (17%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-AL 59
           M  Y    ++   +   +                  N     D           K+   L
Sbjct: 338 MGMYDDMTQDQIEEFLDKEE---------------GNSMTISDVPDDTLLAESGKMTFVL 382

Query: 60  EVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEWNE 106
           E+++  K+     +        L  +Q+                    ++D    Q    
Sbjct: 383 ELLLNLKSEGHRTLFFSQSRKILDIIQRILLNRGFRVTRLDGTITKLCERDRLVTQFQTR 442

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +        G GL L    + +V +   W+     Q ++R       + G  + V 
Sbjct: 443 SLADIFLLTTQVGGVGLTLT-SADRVVIYDPSWNPATDAQAVDR-----AYRIGQSKNVV 496

Query: 167 VYYLIAQNTIDELVLQRLRTKSTI 190
           VY L+  +T++E + +R   K +I
Sbjct: 497 VYRLVTCSTVEEKIYRRQIFKDSI 520


>gi|119192342|ref|XP_001246777.1| hypothetical protein CIMG_00548 [Coccidioides immitis RS]
          Length = 1432

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAH 115
               +++   F   L  ++        L           +    I E+N    P  +    
Sbjct: 923  GHRVLLFSQFLDFLDIIEDFLDGLGVLHLRLDGSLSSLQKQKRIDEFNAPNSPYFVFMLS 982

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G  R V V+ L+ + T
Sbjct: 983  TRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQHRKVLVFQLMTKGT 1036

Query: 176  IDELVLQRLRTKSTIQDLLL 195
             +E ++Q  R K  +   L+
Sbjct: 1037 AEEKIIQIGRKKMALDQALI 1056


>gi|47207122|emb|CAF91371.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1198

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 22  KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSERFVF 81

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 82  LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 135

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 136 RNSYEREMFDRASLKLGLDKAVLQSM 161


>gi|67624313|ref|XP_668439.1| DNA repair protein RAD54-like [Cryptosporidium hominis TU502]
 gi|54659648|gb|EAL38216.1| DNA repair protein RAD54-like [Cryptosporidium hominis]
          Length = 877

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPC 99
             K+  L  +   I       +++  ++            DL           ++ +   
Sbjct: 509 SGKLYLLSRLLFHIRSNTKDRVVLVSNYTQTLDVFECLCRDLQVPCVRLDGSTSITRRHN 568

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +N+             + G G+NL  G N LV F   W+    +Q + R+      
Sbjct: 569 LVKTFNDPNSNSFAFLLSSKAGGCGINL-IGANRLVMFDPDWNPANDKQALARVW----- 622

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+  ++Y L +  TI+E + QR   K  +  +L+ +
Sbjct: 623 RDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTS 662


>gi|66361996|ref|XP_627962.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
 gi|46227534|gb|EAK88469.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
          Length = 877

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 53  DEKIKALEVI---IEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPC 99
             K+  L  +   I       +++  ++            DL           ++ +   
Sbjct: 509 SGKLYLLSRLLFHIRSNTKDRVVLVSNYTQTLDVFECLCRDLQVPCVRLDGSTSITRRHN 568

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +N+             + G G+NL  G N LV F   W+    +Q + R+      
Sbjct: 569 LVKTFNDPNSNSFAFLLSSKAGGCGINL-IGANRLVMFDPDWNPANDKQALARVW----- 622

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+  ++Y L +  TI+E + QR   K  +  +L+ +
Sbjct: 623 RDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTS 662


>gi|259149779|emb|CAY86583.1| Isw2p [Saccharomyces cerevisiae EC1118]
          Length = 1121

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|195498631|ref|XP_002096606.1| GE25760 [Drosophila yakuba]
 gi|194182707|gb|EDW96318.1| GE25760 [Drosophila yakuba]
          Length = 861

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--RTLD--------KDPCTIQEWN 105
           I  LE ++   N   IIV   + S LA ++K        TLD             ++++N
Sbjct: 692 INKLEELLTGTNDK-IIVTSQWVSYLAIIRKRLQDLSWETLDFNGQLSAKDRELVLRDFN 750

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E    +L     + G GLNL    ++L+   L W+ +  +Q  +RI      + G  + 
Sbjct: 751 AEPDKRVLLLSLTAGGVGLNLNVANHMLI-VDLHWNPQLERQAQDRI-----YRYGQTKP 804

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F+Y  + Q+T+++ +      K  I  +++
Sbjct: 805 TFIYRYMCQDTVEQRIKSLQDFKLEIAKVVV 835


>gi|47228866|emb|CAG09381.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1286

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAH 115
               +++       L  L+                 ++      I  +NE   I +    
Sbjct: 737 QGQRVLLFTQSRQMLNILEVFVRENNYSYLKMDGTTSISSRQPLIARYNEDNSIFIFLLT 796

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N ++ +   W+     Q  ER       + G  + V +Y L+   T
Sbjct: 797 TKVGGLGVNLT-GANRVIIYDPDWNPSTDTQARERAW-----RIGQTQQVTIYRLLTAGT 850

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 851 IEEKIYHRQIFKQFLTNRVLKDPKQR 876


>gi|302833439|ref|XP_002948283.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
           nagariensis]
 gi|300266503|gb|EFJ50690.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
           nagariensis]
          Length = 1091

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 37/221 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCL----QL---ANGAVYYD---------EEKHWK 49
             Q++ Y  L  ++I+A N  +   K L    QL    N    +            +H  
Sbjct: 410 DMQKKWYAALLQKDIDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLI 469

Query: 50  EVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTL-DKD 97
           E +  K+  L+ ++ +       +++       +  L+              G T  D  
Sbjct: 470 E-NSGKLVLLDKLLPRLKERDSRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTGGDDR 528

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +   Q ++R     
Sbjct: 529 DNMIDEFNKPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQMDLQAMDR----- 582

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V V+    +N+I+E V+++   K  +  L++ 
Sbjct: 583 AHRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQ 623


>gi|299755187|ref|XP_001828488.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
 gi|298411108|gb|EAU93321.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
          Length = 1471

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 82/227 (36%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVY------YDEEKHWKEVHD 53
            + Y + ++        ++ +  +   K  + + +QL     +       +++ +     D
Sbjct: 835  QLYKQMKKHKMIADGNKDNKGKSGGIKGLSNELMQLRKICQHPFLFESVEDKMNPSGWID 894

Query: 54   EKI-------KALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
             K+       + L  I+ K  A    +++ +     +  ++               G   
Sbjct: 895  NKLIRASGKVELLSRILPKFFATGHRVLIFFQMTKVMDIMEDFLKFMGWKYLRLDGGTKT 954

Query: 95   DKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    +Q +N       +      + G GLNLQ   + ++ F   W+     Q      
Sbjct: 955  EERAQFVQLFNSKDSEYMVFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHADLQA----- 1008

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  RAV +   I + +++E + QR R K  I D ++ A +
Sbjct: 1009 QDRAHRIGQTRAVLILRFITEKSVEEAMYQRARYKLDIDDKVIQAGR 1055


>gi|255081212|ref|XP_002507828.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523104|gb|ACO69086.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1983

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 66   ANAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKDPCT-IQEWNE-GKIPLLFA 114
            A    +++   F           DL   +     G T   D    I  +N  GK  +   
Sbjct: 910  AEGHKVLIFSQFAIVLNILSDYLDLMGYEHERLDGSTSQADRQAGIDRFNTPGKGFVYLL 969

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+ L    +  + +   W+ +   Q + R       + G  + V VY L+ + 
Sbjct: 970  STRAGGMGITLT-AADTAIIYDSDWNPQNDLQAMARC-----HRIGQTKEVKVYRLVTKA 1023

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T ++ + +    K  + + +L
Sbjct: 1024 TYEQSLFETSSKKYGLDEAVL 1044


>gi|219112733|ref|XP_002178118.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411003|gb|EEC50932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 995

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 80/217 (36%), Gaps = 28/217 (12%)

Query: 3   QYHKFQRELYCD--LQGENIEAFNSA--SKTVKCLQLANGAVYYDEEK----HWKEVHDE 54
            Y +  ++   D  L G + +A +    +  ++  ++ N    +  E             
Sbjct: 505 LYKQISKKAVADTALMGTDTQAPSRGLNNIVMQLRKVCNHPYLFSPEGYHINDIIVRSSG 564

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ ++   +A    +++     + +  ++  F                ++    + 
Sbjct: 565 KMALLDQMLPKLRAAGHRVLMFTQMTAVMTIMEDYFALRGYKSLRLDGSTPAEEREKRMY 624

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N    P  +      + G GLNL    + ++ F   W+     Q        R  + G
Sbjct: 625 KFNAPDSPYFVFLLSTRAGGLGLNLT-SADTVIIFDSDWNPMMDLQA-----QDRAHRIG 678

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  V V+ LI  + ++E +L R   K ++ +L++ +
Sbjct: 679 QRSDVSVFRLITYSPVEEKILSRANEKLSVSELVVES 715


>gi|190407604|gb|EDV10871.1| ATPase component of a two subunit chromatin remodeling complex
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1121

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|320167296|gb|EFW44195.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 2352

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 66/165 (40%), Gaps = 23/165 (13%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTLDKDP----- 98
               K+  L +++ +  A    +++   F        D   +   +P    LD D      
Sbjct: 1563 ASGKLLLLHIMLPRLLAAGHRVLIFSTFKIVLDVLHDY-LIANGYPDFCRLDGDSPSDTR 1621

Query: 99   -CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N  +  + +      + G G+NL Y  + ++ F   ++ +  QQ I R     
Sbjct: 1622 QHLIDRFNRREEGLNIFMLSTRAGGLGINL-YTADTVILFDSDFNPQADQQAIAR----- 1675

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G    V  Y  +   T++E +  R ++K  ++ ++++++ K
Sbjct: 1676 AHRHGQTHPVVAYRFVTVGTVEEAIWTRSQSKLFLEHVVVDSMSK 1720


>gi|39978259|ref|XP_370517.1| hypothetical protein MGG_07014 [Magnaporthe oryzae 70-15]
 gi|145013403|gb|EDJ98044.1| hypothetical protein MGG_07014 [Magnaporthe oryzae 70-15]
          Length = 986

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 28/176 (15%)

Query: 51  VHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               K++ L    + +    ++   I+   F   L     RL++A      LD      +
Sbjct: 811 TSSTKMEMLVHSLQKLRSDNSSHKSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQ 870

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I  + N   +        + G  LNL     + +    WW+     Q  +R+    
Sbjct: 871 RAASIDHFMNNVDVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRV---- 925

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-------QDLLLNALKKETIH 204
             + G  R V +  L  +++I+  +++    K+ +        D+ L++L+ E + 
Sbjct: 926 -HRIGQTRPVVITRLCIEDSIESRIVELQEKKTKMINSTVNSDDVALDSLEPEDLQ 980


>gi|83774068|dbj|BAE64193.1| unnamed protein product [Aspergillus oryzae]
          Length = 1471

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L +    +G T  +           
Sbjct: 712 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIPAASRR 771

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 772 LAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 825

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 826 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 856


>gi|207340908|gb|EDZ69113.1| YOR304Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1121

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|164659924|ref|XP_001731086.1| hypothetical protein MGL_2085 [Malassezia globosa CBS 7966]
 gi|159104984|gb|EDP43872.1| hypothetical protein MGL_2085 [Malassezia globosa CBS 7966]
          Length = 789

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------- 87
             + +          D  ++ L+    ++     IV   F S L  ++ A          
Sbjct: 631 HGIIWGMPGTMSTKLDMMLRLLDDFDNQSKGDKTIVFSQFTSFLDLVEDALRARGYNFTR 690

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +      +     +Q       + ++     +   GLNL    N ++   LWW+ +  +Q
Sbjct: 691 YDGSMRRNAREEALQRIRTDDGVRVILISFKAGSTGLNLTC-CNRVILCDLWWNPQIEEQ 749

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             +R       + G  ++V++Y L    T+++ +L    +
Sbjct: 750 AFDR-----AHRLGQTKSVYIYKLSIDGTVEQRILALQTS 784


>gi|156357062|ref|XP_001624043.1| predicted protein [Nematostella vectensis]
 gi|156210795|gb|EDO31943.1| predicted protein [Nematostella vectensis]
          Length = 863

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP- 98
               K+ A++ ++         +++       L  +Q              G    ++  
Sbjct: 316 TASGKLHAIDQLLSYLYKRGHKVLMFSQMTRMLDIVQDYLGYRGYAYERLDGSVRGEERY 375

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +NE     +      + G GLNL    + ++F    ++ +   Q   R       
Sbjct: 376 IAIKNFNEEQDNFIFLLSTKAGGQGLNL-MSADTVIFVDSDYNPQNDLQAAAR-----AH 429

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V +  L+ +NT++E++L+    K  + + ++  
Sbjct: 430 RIGQTRPVKIIRLVGRNTVEEIILKHADDKMRLTNNVIEG 469


>gi|322799536|gb|EFZ20844.1| hypothetical protein SINV_13363 [Solenopsis invicta]
          Length = 305

 Score = 88.5 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 69  APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
              ++     + L  +++                      +    +  +N +  I +L  
Sbjct: 65  HRALIFCQLKAMLDIVEEDLLRTHLPTVTYLRLDGSVPATQRHSVVARFNADPSIDVLLL 124

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI + 
Sbjct: 125 TTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRA 178

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E ++   + K    + +++
Sbjct: 179 TVEEKIMGLQKFKLLTANTIIS 200


>gi|149024737|gb|EDL81234.1| rCG30890, isoform CRA_a [Rattus norvegicus]
          Length = 1668

 Score = 88.5 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 741 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 800

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 801 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 856

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 857 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 894


>gi|322493154|emb|CBZ28439.1| putative DNA repair protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 736

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
           ++++  + +   A  +I+   F S +  +  A  +             L      I+++ 
Sbjct: 510 LRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRNAVIRQFQ 569

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + I ++ A   + G GLNL    +++V    WW+    +Q + R       + G K+ 
Sbjct: 570 TTEHIKIVLASKTATGVGLNLTAANHVVV-VDPWWNPAIEEQAVHRC-----YRIGQKKP 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+V   I  +TI++   +  + K    D +L A
Sbjct: 624 VYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|172320|gb|AAA34930.1| excision repair protein [Saccharomyces cerevisiae]
          Length = 392

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 212 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 269

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 270 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 328

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 329 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 372


>gi|290994819|ref|XP_002680029.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin [Naegleria gruberi]
 gi|284093648|gb|EFC47285.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin [Naegleria gruberi]
          Length = 1283

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
            W      K + L  I  K       +++       L   ++                  
Sbjct: 796 DWMCRSSGKFELLSRIFPKLKRTGHRVLLFSQMTQILDIFEEFLSHLGYEYLRLDGAVNA 855

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +++WN    P  +      S G GLNLQ   + ++ F   W+ ++  Q + R  
Sbjct: 856 ADRGTLVKQWNAKDSPYFVFLLSTRSGGLGLNLQT-ADTVIMFDSDWNPQQDLQAMAR-- 912

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G  ++V V     +  ++E V  R + K   +  ++ A K
Sbjct: 913 ---AHRIGQTKSVLVLTFCTRTPVEEKVRDRAQEKRDAEAKVIKAGK 956


>gi|296083825|emb|CBI24213.3| unnamed protein product [Vitis vinifera]
          Length = 1539

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 51  VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTLDK-DP 98
           +   K+  L+ ++EK +     +++       L  L +             G T  +   
Sbjct: 734 LSSGKLVLLDKLLEKLHETNHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQ 793

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 794 QAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----A 847

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 848 HRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDHLVIQKLNAEGR 894


>gi|255956037|ref|XP_002568771.1| Pc21g17740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590482|emb|CAP96671.1| Pc21g17740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 968

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 34/205 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKAL 59
              +R+  C L   +I   ++         L + AV   E+    E         KI+ L
Sbjct: 751 QVIERQHKCPLCRADINETST---------LVSPAVELSEDTDTIEADHPNSPSSKIETL 801

Query: 60  EVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
             I+     A     +V   + S L  ++    Q               K   +I  ++ 
Sbjct: 802 VKILTAQGQAPGTKTVVFSQWTSFLDLIEPHLQQRGVKFARVDGKMQSVKRDNSINSFSS 861

Query: 107 G-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +  +L A  + C  GLNL    N ++    WW      Q ++R+      + G KR  
Sbjct: 862 DTQCTILLASLSVCSVGLNL-VAANQVILCDSWWAPAIEDQAVDRV-----YRLGQKRET 915

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
            V+ L+ +++I+E VL     K  +
Sbjct: 916 TVWRLVMEDSIEERVLAIQERKRRL 940


>gi|151945386|gb|EDN63629.1| ATPase component of a two subunit chromatin remodeling complex
           [Saccharomyces cerevisiae YJM789]
          Length = 1120

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|297666624|ref|XP_002811619.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Pongo
           abelii]
          Length = 1048

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 600 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 659

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 660 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 715

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 716 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 753


>gi|256272525|gb|EEU07504.1| Isw2p [Saccharomyces cerevisiae JAY291]
          Length = 1121

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|302782409|ref|XP_002972978.1| hypothetical protein SELMODRAFT_413336 [Selaginella moellendorffii]
 gi|300159579|gb|EFJ26199.1| hypothetical protein SELMODRAFT_413336 [Selaginella moellendorffii]
          Length = 937

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 38  GAVYYDEE--KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           G +  DE         +  K+ AL+ ++ K  +    +++  +    L  L+K       
Sbjct: 496 GGIQPDESFLGLSDSQNCGKMLALKNLLSKWTSQGDKVLLFSYSVRMLGILEKFLIRRGY 555

Query: 87  ---AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     ++     + E+N      +      + G GLNL    N +V F   W+  
Sbjct: 556 CFCRLDGSTPMNARQGIVDEFNTSPSKQVFLISTRAGGLGLNL-VSANRVVVFDPNWNPA 614

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  Q        R  + G KR V V+ L+A  +++EL+  R   K  + +L +  
Sbjct: 615 QDLQA-----QDRSFRFGQKRHVTVFRLLAAGSLEELIYTRQIYKQQLFNLAVTG 664


>gi|260949835|ref|XP_002619214.1| hypothetical protein CLUG_00373 [Clavispora lusitaniae ATCC 42720]
 gi|238846786|gb|EEQ36250.1| hypothetical protein CLUG_00373 [Clavispora lusitaniae ATCC 42720]
          Length = 1162

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK---IPLLF 113
                +++   F   L  +     + +            D+    I  +N        +  
Sbjct: 928  GGHKVLIFSQFTKILELIGVCLDEDKIKYSLLTGNIFQDEREDEIALFNSEDEDSTKIFL 987

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    + ++ F   W+ +   Q + R       + G  + V V+  + +
Sbjct: 988  LSTRAGGLGINLTT-ADTVILFDSDWNPQMDIQAMGR-----AHRIGQTKPVKVFRFVVR 1041

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            ++++E++L +  +K  ++  ++ +
Sbjct: 1042 DSVEEILLFKSFSKRALEQKVIKS 1065


>gi|323450700|gb|EGB06580.1| hypothetical protein AURANDRAFT_71986 [Aureococcus anophagefferens]
          Length = 1131

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 95  DKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K      ++N+             + G GLNL  GG+ LV F L W+    +Q   R  
Sbjct: 550 KKRKQFNDDFNDPGSGYFAFLLSSKAGGCGLNL-IGGSRLVMFDLDWNPATDKQAAARCW 608

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G K   + Y  ++  T++E +LQR  +K  +Q+++ +  K +  H
Sbjct: 609 -----RDGQKYQCYTYRFVSTGTLEERMLQRQLSKEGLQNVIED--KAQVNH 653


>gi|238503544|ref|XP_002383005.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
 gi|220690476|gb|EED46825.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
          Length = 1095

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCT 100
              K + L+ I+   +A    +++ +              L  ++     G T   D   
Sbjct: 595 TSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSD 654

Query: 101 I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +N    +         + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 655 LLKLFNAENSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 708

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 709 RIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 750


>gi|159123101|gb|EDP48221.1| DNA excision repair protein Rad16, putative [Aspergillus fumigatus
           A1163]
          Length = 940

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  +      IV   F S L     RL++A      LD      Q
Sbjct: 764 TSSTKIEMLVYELYKLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 823

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 824 RQRSIDYFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 878

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  LN  + E +
Sbjct: 879 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTLNKDQGEAL 925


>gi|156839555|ref|XP_001643467.1| hypothetical protein Kpol_1006p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114079|gb|EDO15609.1| hypothetical protein Kpol_1006p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +   +WK     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 566 NMGGNWK--SSTKIEALVEELYKLRSNVRTIKSIVFSQFTSMLDLVEWRLKRAGFETVKL 623

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N     +      + G  LNL     + +    WW+     Q 
Sbjct: 624 QGSMSPTQRDETIKYFMNNINCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 682

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 683 GDRV-----HRIGQYRPVKITRFCIEDSIESRIIELQEKKANMIHATIN 726


>gi|134080909|emb|CAK46426.1| unnamed protein product [Aspergillus niger]
          Length = 971

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 72  IVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEWN-------EGKIPLLFAHPASCG 120
           IV   F S L     RL++A      LD      Q  N          + +      + G
Sbjct: 820 IVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQNSIEYFMNNVDVEVFLVSLKAGG 879

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             LNL     + +    WW+     Q  +R       + G +R   +  L  +++++  +
Sbjct: 880 VALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVESRI 933

Query: 181 LQRLRTKSTIQDLLLNALKKETI 203
           +     K+ + +  +N  + E +
Sbjct: 934 VLLQEKKANLINGTINKDQGEAL 956


>gi|70987425|ref|XP_749126.1| DNA excision repair protein Rad16 [Aspergillus fumigatus Af293]
 gi|66846756|gb|EAL87088.1| DNA excision repair protein Rad16, putative [Aspergillus fumigatus
           Af293]
          Length = 940

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  +      IV   F S L     RL++A      LD      Q
Sbjct: 764 TSSTKIEMLVYELYKLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 823

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 824 RQRSIDYFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 878

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  LN  + E +
Sbjct: 879 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTLNKDQGEAL 925


>gi|320167261|gb|EFW44160.1| hypothetical protein CAOG_02185 [Capsaspora owczarzaki ATCC 30864]
          Length = 1223

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 53   DEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
              K+  L  I+E+          +V   + S L  L++                   +  
Sbjct: 1031 SCKMVRLLQILEETRNTDSTIKTVVFSQWTSMLDLLEQPLAINKFQFTRLDGRMGRRQRE 1090

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +Q ++ +  + +          GLNL  G  ++V    WW      Q ++R+      
Sbjct: 1091 KALQAFDSDPAVTVFLISLKCGSLGLNLTAGSQVVVL-DPWWCPSAEDQAVDRV-----Y 1144

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G  R V V  +  ++T++E VL+  + K  +
Sbjct: 1145 RLGQMRPVVVRSIFVRDTVEESVLKLQQAKRDL 1177


>gi|307109027|gb|EFN57266.1| hypothetical protein CHLNCDRAFT_143830 [Chlorella variabilis]
          Length = 491

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G  + K    +  +N     +      + G GLNL  G N LV     W+     Q
Sbjct: 213 RIDGGTDVGKRQDVVNSFNRHG--VFLLSTTAGGAGLNLT-GANRLVLLDSHWNPAMDLQ 269

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R+      + G K+A  VY L+   T+DE + QR   K  I   ++
Sbjct: 270 AMARVW-----RDGQKKACVVYRLLTTGTLDEKMYQRQLKKGDIAATMM 313


>gi|212532483|ref|XP_002146398.1| DNA excision repair protein Rad16, putative [Penicillium marneffei
           ATCC 18224]
 gi|210071762|gb|EEA25851.1| DNA excision repair protein Rad16, putative [Penicillium marneffei
           ATCC 18224]
          Length = 951

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL++A      LD      Q
Sbjct: 775 TSSTKIEMLVYDLYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGSMTPTQ 834

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             N          + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 835 RQNSIDHFMKNVDVEVFLVSLKAGGVALNLTEASRVFI-IDPWWNPAAEWQSADRC---- 889

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + + +
Sbjct: 890 -HRIGQRRPCVITRLCIEDSVESRMVALQEKKANMINGTINKDQGDAL 936


>gi|295663903|ref|XP_002792504.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb01]
 gi|226279174|gb|EEH34740.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb01]
          Length = 1029

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFA 114
            N   ++V  H    L  LQ  F              T D     +  +N + +  +   
Sbjct: 630 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFLI 689

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 690 STRAGGIGLNIT-SANKVVVVDPNWNPAFDLQA-----QDRAYRIGQSRDVEVFRLISAG 743

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 744 TIEEIVYARQIYKQQQAN 761


>gi|150864673|ref|XP_001383607.2| DNA dependent ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149385929|gb|ABN65578.2| DNA dependent ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 1067

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 27/172 (15%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD------------- 95
           V   K++ L+ +++  ++     ++       L  L+K     R LD             
Sbjct: 622 VKSGKMQVLKNLLQLWQSQEHKTLLFCQTRQMLDILEKFVANLRLLDIDHEYFTYLRMDG 681

Query: 96  -----KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                K    + ++N +  + +        G G+NL  G + ++ +   W+     Q  E
Sbjct: 682 STPIAKRQDLVDKFNSDPNLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARE 740

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 741 RAW-----RLGQKKDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 787


>gi|294942448|ref|XP_002783529.1| DNA repair protein rad54, putative [Perkinsus marinus ATCC 50983]
 gi|239896026|gb|EER15325.1| DNA repair protein rad54, putative [Perkinsus marinus ATCC 50983]
          Length = 682

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP------- 89
           A+  D+ +  + +   K++ L  ++ +   N   +++   + S L  +Q           
Sbjct: 512 ALPQDDGRKIEALSS-KLQVLHCLLRRLKENGHRVLLFCPWTSMLDLVQYTILRTDGMSC 570

Query: 90  ---QGRTL--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
               G T   D+     +  N  K             GL L    + +V  S  W+  + 
Sbjct: 571 LRIDGSTPSSDRQRKIRKFQNSKKYFAFVLSTRCGHVGLTLT-AADRVVLISPSWNPSDD 629

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q + R       + G +R V  Y L+   TI+E + QR  TK     ++L 
Sbjct: 630 DQAVAR-----AYRIGQRRDVIAYRLVCSGTIEERIFQREVTKIGDSKVILE 676


>gi|153792503|ref|NP_001093563.1| DNA excision repair protein ERCC-6-like [Danio rerio]
 gi|182645387|sp|A2BGR3|ERC6L_DANRE RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|122890885|emb|CAM14199.1| novel protein [Danio rerio]
 gi|122891292|emb|CAM13192.1| novel protein [Danio rerio]
          Length = 1451

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA-----------RLQKAFPQG 91
             H       K++ +  ++E  +      ++       L            RL +     
Sbjct: 466 SDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTV 525

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L +    I  +   K   +        G G+ L  G N +V F   W+     Q ++R
Sbjct: 526 TQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLT-GANRVVIFDPSWNPATDAQAVDR 584

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  + G    V +Y LI   T++E + +R   K ++
Sbjct: 585 -----AYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSL 619


>gi|19114529|ref|NP_593617.1| fun thirty related protein Fft3 [Schizosaccharomyces pombe 972h-]
 gi|46397090|sp|O42861|YFC1_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C25A8.01c
 gi|2864632|emb|CAA16951.1| fun thirty related protein Fft3 [Schizosaccharomyces pombe]
          Length = 922

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTI 101
            K++ L+ ++  A  N   +++   F   L  LQ            F     +D     I
Sbjct: 761 TKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLI 820

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++   + I +      + G G+NL    N+++ + + ++  +  Q  +R       + G
Sbjct: 821 DQFYADESINVFLLSTKAGGFGINL-ACANMVILYDVSFNPFDDLQAEDR-----AHRVG 874

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            K+ V VY  + ++TI+E + +    K  +   L
Sbjct: 875 QKKEVTVYKFVVKDTIEEHIQRLANAKIALDATL 908


>gi|223953572|gb|ACN30001.1| chromodomain helicase DNA-binding protein 7 [Vicugna vicugna]
          Length = 3000

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1212 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1271

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1272 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1331

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1332 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1390

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1391 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1438


>gi|301759851|ref|XP_002915762.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like
            [Ailuropoda melanoleuca]
 gi|281345480|gb|EFB21064.1| hypothetical protein PANDA_003773 [Ailuropoda melanoleuca]
          Length = 2995

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1214 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1273

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1274 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1333

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1334 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1393 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1440


>gi|194214886|ref|XP_001915803.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 7
            (ATP-dependent helicase CHD7) (CHD-7) [Equus caballus]
          Length = 2995

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1215 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1274

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1275 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1334

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1335 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1393

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1394 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1441


>gi|156845664|ref|XP_001645722.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116389|gb|EDO17864.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 65   KANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KA    +++ +     +  +         +     G T  D+    +  +N+        
Sbjct: 1111 KATGHRVLIFFQMTQIMDIMEDFLRHIDVKYLRLDGHTKHDERSELLPMFNDPNSDYFCF 1170

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 1171 ILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 1224

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALK 199
            +N+++E +L++   K  I   ++ A K
Sbjct: 1225 ENSVEEAILEKAHKKLDIDGKVIQAGK 1251


>gi|73999130|ref|XP_544097.2| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            isoform 1 [Canis familiaris]
          Length = 2995

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1215 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1274

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1275 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1334

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1335 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1393

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1394 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1441


>gi|255730915|ref|XP_002550382.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
 gi|240132339|gb|EER31897.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
          Length = 855

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR-------- 92
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 677 GGEWR--SSTKIEALVEELYKLRSDKHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQG 734

Query: 93  --TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +   TI+ +    ++ +      + G  LNL    + +     WW+     Q ++
Sbjct: 735 SMTPQQRDNTIKHFMENTEVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 793

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 794 RV-----HRIGQKRPIKITRFCIEDSIESKIIELQEKKANMIHATIN 835


>gi|167379641|ref|XP_001735221.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165902890|gb|EDR28599.1| chromodomain helicase DNA binding protein, putative [Entamoeba
           dispar SAW760]
          Length = 1044

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L++ +      +     +  +N       +      + G G+NL    + ++ +   W+ 
Sbjct: 542 LKELWNGAMGREARQRAMDHFNAKDSTDFVFLLSTRAGGLGINLTT-ADTVIIYDSDWNP 600

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   Q   R       + G ++ V +Y L  + TI+E +L   + K  +  L++  ++K+
Sbjct: 601 QNDLQAQARC-----HRIGQEKTVNIYRLATEGTIEEKILLSAKKKLVLDHLIIQTMEKK 655

Query: 202 T 202
            
Sbjct: 656 G 656


>gi|154275030|ref|XP_001538366.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414806|gb|EDN10168.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1051

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 26/210 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R  Y   Q   +       +  K  Q      Y       K +    +  +E   
Sbjct: 835  YTAITRRGYEKFQESQLSKRQGPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 888

Query: 64   EKANAAPI--IVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGK-I 109
            +  + API  IV   + S L  ++ A                TL +    I  + E   +
Sbjct: 889  KAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTRLDGTMTLKQRNAAIDAFREDDNV 948

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL  G  + +     ++     Q ++R+      + G  R V    
Sbjct: 949  TILLATLGAGGVGLNLTAGSRVYIM-EPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1002

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             I +++I+E + +    K  + D+ LN  K
Sbjct: 1003 FIMKDSIEEKIAELAMKKQQMADMSLNRGK 1032


>gi|6735309|emb|CAB68136.1| helicase-like protein [Arabidopsis thaliana]
          Length = 1496

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 28/160 (17%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
                K++ L++++++  A    +++       L  L+                 T+    
Sbjct: 1203 TDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRR 1262

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++     I +      + G G+NL    + ++F+   W+     Q ++R       
Sbjct: 1263 DMVRDFQHRSDIFVFLLSTRAGGLGINLT-AADTVIFYESDWNPTLDLQAMDR-----AH 1316

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  +           T++E +L R   K+T+Q L++  
Sbjct: 1317 RLGQTKD---------ETVEEKILHRASQKNTVQQLVMTG 1347


>gi|317030844|ref|XP_001392337.2| chromodomain helicase (Chd1) [Aspergillus niger CBS 513.88]
          Length = 1516

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L      +G T  +           
Sbjct: 756 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEFRGYTYQRLDGTIPAAARR 815

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 816 LAIEHYNAPGSNDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 869

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 870 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 900


>gi|255552930|ref|XP_002517508.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223543519|gb|EEF45050.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1138

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 25/163 (15%)

Query: 54   EKIKALEVII--EKANAAPIIVAYHFNSDLARL------QKAFPQGRTL---------DK 96
             K K L  II   +A    ++V   +   L  +      +  + QG+ +          +
Sbjct: 926  AKTKFLMEIILLSEAMKERVLVFSQYLDPLKLIAMQLESRFHWIQGKEILHMHGKLDMGE 985

Query: 97   DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I+++N+ K    ++ A   +C  G+NL  G + +V   + W+    +Q I R    
Sbjct: 986  RQSLIKDFNDRKSEAKVMLASTKACSEGINL-VGASRVVLLDVVWNPSVVRQAISR---- 1040

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G ++ V++Y+LIA  T++E    R   K  + +L+ ++
Sbjct: 1041 -AYRLGQEKVVYIYHLIASETLEEDKYCRQAEKERLSELVFDS 1082


>gi|119177366|ref|XP_001240470.1| hypothetical protein CIMG_07633 [Coccidioides immitis RS]
          Length = 1142

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K++ L  ++++   N   I++   F   +  L++             G T 
Sbjct: 931  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVMDILEQVLETLEIRFFRLDGTTS 990

Query: 95   DKDPCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I +  + +  +P+      + G G+NL    N ++ F   ++ ++  Q      
Sbjct: 991  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQDDIQA----- 1044

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1045 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLALDQRV 1086


>gi|47206539|emb|CAF92235.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 993

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T       I  +N    +      
Sbjct: 644 EGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL 703

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 704 STRAGGLGINL-ASADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRG 757

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 758 SVEERITQVAKRKMML 773


>gi|320031638|gb|EFW13598.1| chromatin remodeling complex subunit Chd3 [Coccidioides posadasii
            str. Silveira]
          Length = 1534

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAH 115
               +++   F   L  ++        L           +    I E+N    P  +    
Sbjct: 1025 GHRVLLFSQFLDFLDIIEDFLDGLGVLHLRLDGSLSSLQKQKRIDEFNAPNSPYFVFMLS 1084

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G  R V V+ L+ + T
Sbjct: 1085 TRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQHRKVLVFQLMTKGT 1138

Query: 176  IDELVLQRLRTKSTIQDLLL 195
             +E ++Q  R K  +   L+
Sbjct: 1139 AEEKIIQIGRKKMALDQALI 1158


>gi|289679708|ref|ZP_06500598.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae FF5]
          Length = 97

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ +  WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R K
Sbjct: 4   AADTVIHYDPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREK 58

Query: 188 STIQDLLLNA 197
           S +   +L+ 
Sbjct: 59  SALASGVLDG 68


>gi|256081844|ref|XP_002577177.1| transcriptional regulator atrx homolog (X-linked nuclear protein-1)
            [Schistosoma mansoni]
 gi|238662474|emb|CAZ33414.1| transcriptional regulator atrx homolog (X-linked nuclear protein-1),
            putative [Schistosoma mansoni]
          Length = 1673

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 39/191 (20%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH----------FNSDLARLQKAF 88
            Y DE   W+     K+  L  I+++ +     +I+  H          F +++  L   F
Sbjct: 1329 YKDEYD-WQIDVGAKMDVLFNILKRCSDIGDKVIMFSHSLISLDLVERFLAEINHLSAYF 1387

Query: 89   PQ----------------GRTLDKDPCTIQ-EWN---EGKIPLLFAHPASCGHGLNLQYG 128
                              G         +Q  +N     ++ L      + G G+NL   
Sbjct: 1388 SDIGHNTWIRGLDYERMDGSMNVNVRKDLQTRFNSTSNTRLRLFIISTKAGGLGINL-VS 1446

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N L+     W+     Q I      R  + G  + V++Y LIA+ TI+E +  R  TK 
Sbjct: 1447 ANRLILLDASWNPSHDIQSI-----FRSYRFGQSKPVYIYRLIAKGTIEEKIYDRQVTKQ 1501

Query: 189  TIQDLLLNALK 199
            ++   +++ L+
Sbjct: 1502 SLSLRVIDELQ 1512


>gi|84997071|ref|XP_953257.1| SWI/SNF-related chromatin remodelling factor (ISWI homologue)
            [Theileria annulata strain Ankara]
 gi|65304253|emb|CAI76632.1| SWI/SNF-related chromatin remodelling factor (ISWI homologue),
            putative [Theileria annulata]
          Length = 1972

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 69   APIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPC-----TIQEWN--EGKIPLLFAHP 116
              +++   F   L       + + +   R             I+E+N       +     
Sbjct: 998  HKVLIFTQFQLVLDELETYCINRGWKYMRLDGSTNKLIRELDIREFNSSNSNYFVYLIST 1057

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N +V +   W+     Q I+R       + G KR V ++ LI++ T+
Sbjct: 1058 RAGGLGINLT-AANHVVLYDEDWNPFIDLQAIDR-----AHRIGQKRNVHIWKLISEWTV 1111

Query: 177  DELVLQRLRTKSTIQDLLL 195
            +E +      K  +  L+L
Sbjct: 1112 EERMALIREKKLQLDKLIL 1130


>gi|307204540|gb|EFN83220.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Harpegnathos saltator]
          Length = 847

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 61/153 (39%), Gaps = 19/153 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K+K L+ ++ +   +   I++   F   L  L++                 + +    I 
Sbjct: 650 KLKHLDELLPRLKKDGHRILIFSQFTMVLDILEEYLTIRGQTFIRLDGSTPVTERQSLIN 709

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+     I +      + G G+NL     +++   + ++    +Q  +R       + G 
Sbjct: 710 EYTQNSSIFIFLLSTRAGGLGINLTAADTVIIH-DIDFNPYNDKQAEDRC-----HRVGQ 763

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           K+ V +  L+++ TI+E + +  + K  ++  +
Sbjct: 764 KKPVTIIRLLSKGTIEESMYEIAQEKLHLEQQI 796


>gi|269128789|ref|YP_003302159.1| SNF2-like protein [Thermomonospora curvata DSM 43183]
 gi|268313747|gb|ACZ00122.1| SNF2-related protein [Thermomonospora curvata DSM 43183]
          Length = 746

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQ 102
             K++ L  ++++A  N   ++V   F   LA +Q+A                +    + 
Sbjct: 557 SAKLQRLCELVKEAEENGHKVVVFSFFRDVLATVQRALGPAALGPLTGSLSAARRQQLVD 616

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+       +L +   + G GLNLQ   ++++            Q + R       + G 
Sbjct: 617 EFTAHPGHAVLLSQIQAGGVGLNLQ-AASVVIICEPQLKPTLEAQAVAR-----AHRMGQ 670

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R V V+ L+  +++D+ +++ LR KS + D 
Sbjct: 671 VRKVQVHRLLVADSVDQRIMELLRHKSALFDE 702


>gi|302837269|ref|XP_002950194.1| hypothetical protein VOLCADRAFT_117484 [Volvox carteri f.
            nagariensis]
 gi|300264667|gb|EFJ48862.1| hypothetical protein VOLCADRAFT_117484 [Volvox carteri f.
            nagariensis]
          Length = 1735

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 21/146 (14%)

Query: 65   KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPC-TIQEW-NEGK----I 109
            +A    +++   F   L  L+              G    +D    I  +  EG+     
Sbjct: 1489 RAEGRRVLIFSQFVIMLNVLEDYCNAVGFPVERIDGSIQGRDRQRAIDRFCAEGEGSDGA 1548

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+ L    +  + +   W+ +   Q + R       + G K+ V VY 
Sbjct: 1549 FVFLLSTRAGGQGITLT-AADTCIIYDSDWNPQNDLQAMARC-----HRIGQKKEVTVYR 1602

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI+++T +  +      K  + + +L
Sbjct: 1603 LISRDTYEMALFNSASRKYGLDEAIL 1628


>gi|1881825|gb|AAB49515.1| Rhp16 [Schizosaccharomyces pombe]
          Length = 854

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKA------FPQGRTLDKD 97
              KI+AL      + +K      IV   F S L     RL+KA         G T    
Sbjct: 681 SSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKAR 740

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI+ + N+  I +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 741 AATIEAFSNDINITIFLVSLKAGGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI----- 794

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K  + V  L  +N+I+  +++    K+ +    ++
Sbjct: 795 HRIGQKGRIKVITLCIENSIESKIIELQEKKAQMIHATID 834


>gi|6324879|ref|NP_014948.1| Isw2p [Saccharomyces cerevisiae S288c]
 gi|74676479|sp|Q08773|ISW2_YEAST RecName: Full=ISWI chromatin-remodeling complex ATPase ISW2;
           AltName: Full=Imitation switch protein 2
 gi|1420671|emb|CAA99622.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285815176|tpg|DAA11069.1| TPA: Isw2p [Saccharomyces cerevisiae S288c]
          Length = 1120

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++I+A N A              +QL               G  Y  +
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ ++++     + +++    +  L  L+              G T
Sbjct: 483 EHLI--FNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGST 540

Query: 94  LDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I E+N+   +  +      + G G+NL    + ++ F   W+ +   Q ++R
Sbjct: 541 SHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL-VTADTVILFDSDWNPQADLQAMDR 599

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 600 -----AHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|62740093|gb|AAH94093.1| LOC733207 protein [Xenopus laevis]
          Length = 1416

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 801 GNRVLIFSQMVRMLNILAEYLKSRQFPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLS 860

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 861 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 914

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +++R + K  +  L+   ++   K  +H 
Sbjct: 915 VEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHT 947


>gi|170579417|ref|XP_001894822.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158598445|gb|EDP36333.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 926

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 81/211 (38%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKALEV 61
           +Y K + +   +    ++   +  + +  C +  +   +  +EE   +     ++  L  
Sbjct: 720 EYRKKKSDHVAE----DLAFLSDFAISQLCSKFTSTQKFILNEEVALESGKLRELDKLLP 775

Query: 62  IIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNE-GKIP 110
            I+K     +++   F S +  L         Q     G T   +    I E+N    + 
Sbjct: 776 SIKK-KGDKVLIFSQFTSMMDILEVYLRLRDYQYCRLDGSTPVMERQDVINEYNSSPDLF 834

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    +I++   + ++    +Q   R       + G  + VFV  L
Sbjct: 835 VFLLSTKAGGLGINLTAANHIILH-DIDFNPYNDKQAEGRC-----HRMGQTKEVFVVRL 888

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I+ +T++E +L   + K  ++  +  A   E
Sbjct: 889 ISADTVEEEMLALAQKKLELEKEVTGASTAE 919


>gi|303312901|ref|XP_003066462.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106124|gb|EER24317.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1492

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAH 115
               +++   F   L  ++        L           +    I E+N    P  +    
Sbjct: 983  GHRVLLFSQFLDFLDIIEDFLDGLGVLHLRLDGSLSSLQKQKRIDEFNAPNSPYFVFMLS 1042

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G  R V V+ L+ + T
Sbjct: 1043 TRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQHRKVLVFQLMTKGT 1096

Query: 176  IDELVLQRLRTKSTIQDLLL 195
             +E ++Q  R K  +   L+
Sbjct: 1097 AEEKIIQIGRKKMALDQALI 1116


>gi|73946651|ref|XP_533537.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 1 [Canis familiaris]
          Length = 1542

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 28/217 (12%)

Query: 3    QYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDE 54
             Y   Q +      G   +    + +     +QL     +    +H +            
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIEVNCSNTLYRASG 1020

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-Q 102
            K + L+ I+   +A    +++     S +  ++  F           G T  +D   + +
Sbjct: 1021 KFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1080

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  + G
Sbjct: 1081 KFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAHRIG 1134

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1171


>gi|323508121|emb|CBQ67992.1| related to RAD16-nucleotide excision repair protein [Sporisorium
            reilianum]
          Length = 1659

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQE 103
            K+      ++  +    +V   +   L R+QK+               +  D+       
Sbjct: 1474 KLDQSLEALDSYDPVKSVVFSQWTKMLDRIQKSLNLTGIRYTRLDGTMKRPDRTAALEAF 1533

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +  I +L     + G GLNL            +W+       +E  G+ R  + G  R
Sbjct: 1534 RTDPSIEVLLVSLRAGGTGLNL-VSACRAYLMDPYWN-----PAVENQGLDRVHRMGQTR 1587

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V     I +++I+E +L+  + K  + + +
Sbjct: 1588 PVITTKYIMRHSIEENMLRLQKRKMMLAEKV 1618


>gi|297482338|ref|XP_002692716.1| PREDICTED: kismet-like [Bos taurus]
 gi|296480623|gb|DAA22738.1| kismet-like [Bos taurus]
          Length = 2935

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQREL-YCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1161 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1220

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1221 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1280

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1281 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1339

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1340 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1387


>gi|268053983|gb|ACY92478.1| brahma-like protein [Saccoglossus kowalevskii]
          Length = 881

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
              K + L+ I+ K  A     ++     + +  L+  F           G T  D    
Sbjct: 312 SSGKFELLDRILPKLKACNHKALLFSQMTTLMTILEDYFAHRGFRYLRLDGTTKSDDRAK 371

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +N    P  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 372 LLEMFNAPGSPYNIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 425

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 426 RIGQKSEVRVLRLLTVNSVEEKILAAARYKLNVDEKVIQA 465


>gi|194672930|ref|XP_612494.4| PREDICTED: kismet-like [Bos taurus]
          Length = 2940

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQREL-YCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1166 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1225

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1226 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1285

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1286 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1344

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1345 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1392


>gi|39977089|ref|XP_369932.1| hypothetical protein MGG_06447 [Magnaporthe oryzae 70-15]
 gi|145016135|gb|EDK00625.1| hypothetical protein MGG_06447 [Magnaporthe oryzae 70-15]
          Length = 1592

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAY------HFNSDLARLQKA---FPQGRT-LDKDP 98
             H  KI  L  I+++A      +++        +F  +L ++QK       G T +    
Sbjct: 937  DHSYKITVLTRILDEAKRVGDKVLIFSSRIPVLNFLENLMKMQKRPYSRLDGETKISTRQ 996

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++  +N     +      + G GLN+Q G N +V     W     QQ I R       +
Sbjct: 997  ASVANFNANNDEVYLISTNAGGVGLNIQ-GANRVVMMDFQWQPANEQQAIGR-----AYR 1050

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  + V+VY+LI   T +  +      K+ +   +++
Sbjct: 1051 IGQTKPVYVYWLIVGGTYEPKLHAAAIFKTQLASRVVD 1088


>gi|67526707|ref|XP_661415.1| hypothetical protein AN3811.2 [Aspergillus nidulans FGSC A4]
 gi|40740829|gb|EAA60019.1| hypothetical protein AN3811.2 [Aspergillus nidulans FGSC A4]
 gi|259481632|tpe|CBF75332.1| TPA: DNA excision repair protein (Rad26L), putative
           (AFU_orthologue; AFUA_2G03750) [Aspergillus nidulans
           FGSC A4]
          Length = 1016

 Score = 88.5 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            N   ++V  H    L  LQ  F              T +     + E+N + +  +   
Sbjct: 638 GNGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGSMTYETRAKVVDEFNSDPRQFVFLI 697

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 698 STRAGGVGLNIT-SANKVVIVDPNWNPSHDLQA-----QDRAYRIGQTRNVEVFRLISAG 751

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 752 TIEEIVYARQIYKQQQAN 769


>gi|327269727|ref|XP_003219644.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like [Anolis
            carolinensis]
          Length = 3008

 Score = 88.5 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1209 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNP 1268

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1269 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1328

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1329 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1387

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1388 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1435


>gi|126321078|ref|XP_001368272.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            [Monodelphis domestica]
          Length = 2999

 Score = 88.5 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1276 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1394

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1395 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1442


>gi|260942759|ref|XP_002615678.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
 gi|238850968|gb|EEQ40432.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
          Length = 1563

 Score = 88.5 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 68   AAPIIVAYH------FNSDLARLQK----AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++ +          D  RL+         G   D     +  +NE   +       
Sbjct: 1042 GHRVLLFFQMTQIMDIMEDFLRLRGMKYMRLDGGTKADDRTYLLNLFNEPNSEYFCFLLS 1101

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI +++
Sbjct: 1102 TRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITEDS 1155

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E+VL+R   K  I   ++ A K
Sbjct: 1156 IEEMVLERAVAKLEIDGKVIQAGK 1179


>gi|323453075|gb|EGB08947.1| hypothetical protein AURANDRAFT_53418 [Aureococcus anophagefferens]
          Length = 738

 Score = 88.5 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 23/179 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           ANG                K + LE I+ K  A    +++       L  ++        
Sbjct: 477 ANGEFIGVATPKALVNAAGKFRLLERILPKLKAQGHKVLLFSQMTELLNIIEDYLRWREW 536

Query: 87  ---AFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                  G  L +    I  +N       +  +      + G G+NL    + ++ F   
Sbjct: 537 NYFRIDGGVELSERQRQIDAFNGEGQESNEYFVFMLSTRAGGLGINL-ATADTVILFDSD 595

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+  +  Q ++R       + G KR V VY  +   + +  ++++  +K  ++ + +  
Sbjct: 596 WNPHQDAQAMDR-----AHRIGQKRDVVVYRFLTSGSAEIGMMEKQISKKKLERMAVQG 649


>gi|145238522|ref|XP_001391908.1| DNA excision repair protein (Rad26L) [Aspergillus niger CBS 513.88]
 gi|134076397|emb|CAK48215.1| unnamed protein product [Aspergillus niger]
          Length = 1013

 Score = 88.5 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + ++    + ++N   +  +   
Sbjct: 635 ANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMSYEERTKVVDDFNSNPRQFVFLI 694

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 695 STRSGGVGLNIT-SANKVVIVDPNWNPSHDLQA-----QDRAYRIGQSRDVEVFRLISAG 748

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 749 TIEEIVYARQIYKQQQAN 766


>gi|320581583|gb|EFW95803.1| DNA dependent ATPase [Pichia angusta DL-1]
          Length = 1003

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 45/232 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDE-- 54
           K Y  F       L  E+I        N+        ++ N     D +   K       
Sbjct: 538 KLYEDF-------LNSEDINKILRGKRNALFGIDVLRKICNHPDLVDLKLRKKHQRTAEQ 590

Query: 55  ------KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------------AFPQ 90
                 K++ +  +++   +     ++       L  LQ                     
Sbjct: 591 LEARAGKLQVVHALLDVWFSEGRKTLIFTQTRQMLDILQDFMEALNYETESKFSFMRMDG 650

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + +    + ++N      +        G G+NL  G + ++ +   W+     Q  E
Sbjct: 651 TTPISQRQSMVDQFNTNPMYNVFLLTTRVGGLGVNLT-GASRVIIYDPDWNPSTDVQARE 709

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K+ V +Y L+   +I+E +  R   K  + + +L   K++
Sbjct: 710 RAW-----RLGQKKDVVIYRLMMAGSIEEKIYHRQIFKQLLTNKILKDPKQK 756


>gi|255718303|ref|XP_002555432.1| KLTH0G09196p [Lachancea thermotolerans]
 gi|238936816|emb|CAR24995.1| KLTH0G09196p [Lachancea thermotolerans]
          Length = 1308

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQL---ANGAVYYDEEKHWKEVHDE-- 54
           + Y +  +            A     K    K +QL    N    +DE +          
Sbjct: 715 QLYQQMLKHNALFFGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGIINPTRGNS 774

Query: 55  --------KIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLD 95
                   K + L+ I+ K  A    +++ +          D  R   L+     G T  
Sbjct: 775 PLLYRVAGKFELLDRILPKFKATGHRVLMFFQMTQVMDIMEDFLRMRDLKYLRLDGATKT 834

Query: 96  KDPC-TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    ++ +N              + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 835 EERTGMLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA----- 888

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 889 QDRAHRIGQKNEVRILRLITTDSVEEVILERALQKLDIDGKVIQAGK 935


>gi|327290056|ref|XP_003229740.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 697

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPC 99
             K+  L  ++EK        +V       L  ++    +              L +   
Sbjct: 428 SGKLVFLVALLEKLQEEGHQTLVFSQSRKMLDIIEHILTKRSFRLMRVDGTVTCLAEREK 487

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++++   K   +        G GL L     +++ F   W+     Q ++R       +
Sbjct: 488 RVRQFQMDKSYSVFLLTTQVGGVGLTLTSATRVVI-FDPSWNPATDAQAVDR-----AYR 541

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V +Y LI   T++E + +R   K ++
Sbjct: 542 IGQKENVVIYRLITCGTVEEKIYRRQVFKDSL 573


>gi|134076845|emb|CAK45266.1| unnamed protein product [Aspergillus niger]
          Length = 1504

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DP 98
               K+  L+ ++ K   +   +++       L  L      +G T  +           
Sbjct: 744 TSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEFRGYTYQRLDGTIPAAARR 803

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N              + G G+NL    + +V F   W+ +   Q + R      
Sbjct: 804 LAIEHYNAPGSNDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQADLQAMAR-----A 857

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  R V VY L++++T++E V++R R K
Sbjct: 858 HRIGQTRPVSVYRLVSKDTVEEEVIERARNK 888


>gi|118496046|dbj|BAF37539.1| DNA repair and recombination protein RAD5B [Neurospora crassa]
          Length = 950

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 21/176 (11%)

Query: 30  VKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQ 85
            K L+ A   +   DEE+   E    K +A+  +++       + II+   + S L  +Q
Sbjct: 753 DKLLEPAPEHSATQDEEELESETKSSKTEAVLALVKGTLDKEGSKIIIFSQWTSFLTIIQ 812

Query: 86  KAFPQGR-----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
               +                +D        +    +L A    C  GLNL    + ++ 
Sbjct: 813 HQLDEAGYTYTRIDGSMNAAQRDAAIRALDYDPNTRILLASLGVCSVGLNL-VSADTVIL 871

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              WW      Q ++R+      + G  R   V+ L+  N+I+E VL   + K  +
Sbjct: 872 ADSWWAPAIEDQAVDRV-----HRLGQTRPTTVWRLVMDNSIEERVLDIQKEKREL 922


>gi|332025170|gb|EGI65350.1| ATP-dependent helicase brm [Acromyrmex echinatior]
          Length = 1953

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 85   QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G T  +D   + +++N+   +  L      + G GLNLQ   + ++ F   W+ 
Sbjct: 1499 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 1557

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  Q        R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1558 HQDLQA-----QDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1608


>gi|328793843|ref|XP_624270.3| PREDICTED: ATP-dependent helicase brm [Apis mellifera]
          Length = 2018

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 85   QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G T  +D   + +++N+   +  L      + G GLNLQ   + ++ F   W+ 
Sbjct: 1564 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 1622

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  Q        R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1623 HQDLQA-----QDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1673


>gi|326917666|ref|XP_003205117.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 7-like [Meleagris gallopavo]
          Length = 3011

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQREL-YCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1217 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1276

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1277 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1336

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1337 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1395

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1396 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1443


>gi|322785850|gb|EFZ12469.1| hypothetical protein SINV_09102 [Solenopsis invicta]
          Length = 1963

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 85   QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G T  +D   + +++N+   +  L      + G GLNLQ   + ++ F   W+ 
Sbjct: 1509 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 1567

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  Q        R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1568 HQDLQA-----QDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1618


>gi|307206570|gb|EFN84572.1| TATA-binding protein-associated factor 172 [Harpegnathos saltator]
          Length = 318

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 69  APIIVAYHFNSDLARLQK-----AFPQGRTLDKDPC--------TIQEWN-EGKIPLLFA 114
              ++     + L  ++K       P    L  D           +  +N +  I +L  
Sbjct: 107 HRALIFCQLKAMLDIVEKDLLRMHLPTVTYLRLDGSIPAAQRHSVVARFNADPSIDVLLL 166

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI ++
Sbjct: 167 TTQVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRS 220

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E ++   + K    + +++
Sbjct: 221 TVEEKIMGLQKFKLLTANTVIS 242


>gi|307179542|gb|EFN67856.1| ATP-dependent helicase brm [Camponotus floridanus]
          Length = 1996

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 85   QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G T  +D   + +++N+   +  L      + G GLNLQ   + ++ F   W+ 
Sbjct: 1542 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 1600

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  Q        R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1601 HQDLQA-----QDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1651


>gi|121710388|ref|XP_001272810.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           clavatus NRRL 1]
 gi|119400960|gb|EAW11384.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           clavatus NRRL 1]
          Length = 1011

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + ++    + ++N + K  +   
Sbjct: 631 ANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMSYEERTKVVDDFNSDPKQFVFLI 690

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 691 STRSGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQSRNVEVFRLISAG 744

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 745 TIEEIVYARQIYKQQQAN 762


>gi|117606190|ref|NP_001071054.1| chromodomain-helicase-DNA-binding protein 7 [Gallus gallus]
 gi|123883232|sp|Q06A37|CHD7_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|115394059|gb|ABI96999.1| chromodomain helicase DNA-binding protein 7 [Gallus gallus]
          Length = 3011

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 42/233 (18%)

Query: 2    KQYHK-FQREL-YCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
            K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 1217 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1276

Query: 52   --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
               D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 1277 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1336

Query: 93   TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1337 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 1395

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1396 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1443


>gi|316971517|gb|EFV55276.1| DNA excision repair protein ERCC-6 [Trichinella spiralis]
          Length = 1202

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 3   QYHKF-QRELYCDLQGENIEAFNSASKTVKCL---QLANGAVYYDEEKHWKEVHDEKIKA 58
            Y ++   E    +    ++ F   +   K      L + AV  +  +        K+  
Sbjct: 371 LYKQYANSEECKAILSGKLDIFLGLAYLRKLCNHPDLVSRAVGENSNEFGYFRRSGKMIV 430

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L  +++  K     I++       L  L+    +             +      +  +NE
Sbjct: 431 LHSLLKLWKQENHRILLFSQSRQMLNILEDFLKKRNYAHLRMDGTTAVGSRQSIVTTFNE 490

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              I +L       G GL+L  G + ++ +   W+     Q  ER       + G    V
Sbjct: 491 NADIFVLLLTTRVGGLGLDLT-GADRVILYDPDWNPTTDAQAQERAW-----RLGQTSDV 544

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY L++  T++E +  R   K  + + +L
Sbjct: 545 VVYRLVSSGTVEEKIYHRQIFKQFLMNRVL 574


>gi|296235754|ref|XP_002763033.1| PREDICTED: DNA excision repair protein ERCC-6-like, partial
           [Callithrix jacchus]
          Length = 1229

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKIPLL 112
           +      +V       L  +++                   L+++             + 
Sbjct: 450 RDEGHQTLVFSQSRQILNIIERLLKNRHFKILRIDGTITHLLEREKRINLFQQNKDYSVF 509

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                  G GL L      +V F   W+     Q ++R+      + G K  V VY LI 
Sbjct: 510 LLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YRIGQKENVVVYRLIT 563

Query: 173 QNTIDELVLQRLRTKSTI 190
             T++E + +R   K ++
Sbjct: 564 CGTVEEKIYRRQVFKDSL 581


>gi|256073356|ref|XP_002572997.1| hypothetical protein [Schistosoma mansoni]
 gi|238658166|emb|CAZ29229.1| expressed protein [Schistosoma mansoni]
          Length = 3580

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWN-EGKIPLLF 113
            +A+   +++       L  L+        Q   +D           I  ++ +    +  
Sbjct: 1507 RADGHKVLIFSQMIRVLDILEDYLVHQGFQFERIDGRIHGPLRQEAIDRFSIDPDKFVFL 1566

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    ++++ +   W+ +   Q   R       + G ++ V VY LI +
Sbjct: 1567 LCTKAGGLGINLT-AADVVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLITR 1620

Query: 174  NTIDELVLQRLRTKSTIQDLLLNAL 198
            NT +  +  R   K  +   +L ++
Sbjct: 1621 NTYEREMFDRASLKLGLDRAVLQSM 1645


>gi|67522999|ref|XP_659560.1| hypothetical protein AN1956.2 [Aspergillus nidulans FGSC A4]
 gi|40745965|gb|EAA65121.1| hypothetical protein AN1956.2 [Aspergillus nidulans FGSC A4]
 gi|259487315|tpe|CBF85892.1| TPA: chromatin remodeling complex subunit (Chd3), putative
            (AFU_orthologue; AFUA_4G13440) [Aspergillus nidulans FGSC
            A4]
          Length = 1443

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 55   KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
            K++ LE+++   +A    ++V   F  +L  ++          +              I 
Sbjct: 923  KLQLLELMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMID 982

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N    P         S G G+NL    + ++     ++  +  Q + R       + G
Sbjct: 983  DYNAENSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRIG 1036

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             K  V V+ L+ + + +E ++Q  R K  +  +L++ +  E
Sbjct: 1037 QKNKVLVFQLMIRGSAEEKIMQIGRKKMVLDHVLIDRMAAE 1077


>gi|297834548|ref|XP_002885156.1| hypothetical protein ARALYDRAFT_318431 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330996|gb|EFH61415.1| hypothetical protein ARALYDRAFT_318431 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 630

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
            ++    + +  LQ    QG        TI       + ++     +   GLN+      
Sbjct: 477 FISSKIKAVIELLQSLAQQGSPDTPPIKTIVFSQWTDVQVMLMSLKAGNLGLNM-VAACH 535

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++   LWW+     Q I+R       + G  R V V  +  +NT++E +L     K  I
Sbjct: 536 VILLDLWWNPTTEDQAIDR-----AHRIGQTRTVTVTRIAIKNTVEERILTLQERKRNI 589


>gi|254432066|ref|ZP_05045769.1| SNF2 family N-terminal domain protein [Cyanobium sp. PCC 7001]
 gi|197626519|gb|EDY39078.1| SNF2 family N-terminal domain protein [Cyanobium sp. PCC 7001]
          Length = 1033

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 88   FPQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            F  G T   +    +  + E      L      + G GLNL    + +     WW+    
Sbjct: 906  FLYGSTSKTERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHIDRWWNPAVE 964

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q  +R       + G +  V V+  I   +++E V + +R KS + + ++
Sbjct: 965  NQATDR-----AYRIGQQNRVMVHKFITSGSVEEKVDRMIREKSKLAEEIV 1010


>gi|324500109|gb|ADY40062.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1095

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     + Y +L      + N      ++  +  N A       H++E    +++ L 
Sbjct: 745 QYYKWILTKNYKELSKGVKGSINGFVNLIMELKKCCNHASLVRAYDHYEENAQARLQQLM 804

Query: 61  ------VIIEKA------NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQE 103
                 ++++K           +++       L  +Q     + FP  R        +++
Sbjct: 805 KSSGKLILLDKLLCRLHETGHRVLIFSQMVMMLDIVQEYLQLRRFPSQRLDGSMRADLRK 864

Query: 104 -----WN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +N EG           + G G+NL    + ++ F   W+ +   Q + R      
Sbjct: 865 AALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----A 918

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 919 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLVIQRM 960


>gi|302405899|ref|XP_003000786.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
 gi|261360743|gb|EEY23171.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
          Length = 1103

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 45   EKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------- 94
             +  + +   KI+ +  I+ ++ +    I+   F S +  ++  F +             
Sbjct: 852  GQATQILASAKIRQMMQILHKEVHEHKFIIFSQFTSMMDLIEPFFRKDGLKFTRYDGGMK 911

Query: 95   -DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE--------- 143
             D+   ++    N+ K  +L         GLNL      ++    +W+            
Sbjct: 912  NDEREASLDRLRNDKKTRILLCSLKCGSLGLNLT-AATRVIIVEPFWNPVRAPSLCSRQN 970

Query: 144  -------HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLLL 195
                     Q +E   + R  +      V VY LI + T+++ +L     K  + Q  + 
Sbjct: 971  MAGELLTEWQFVEEQAIDRVHRLTQTIDVIVYRLIVEATVEDRILALQEKKRLLAQTAIE 1030

Query: 196  NALKKETIH 204
              +KK+ + 
Sbjct: 1031 GGMKKDVMK 1039


>gi|170097135|ref|XP_001879787.1| RAD26-like SNF2 family DNA-dependent ATPase [Laccaria bicolor
           S238N-H82]
 gi|164645190|gb|EDR09438.1| RAD26-like SNF2 family DNA-dependent ATPase [Laccaria bicolor
           S238N-H82]
          Length = 1000

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 90  QGRTLDKDPC-TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G T   D    I  + N+ ++ +      + G GLNL  G N +V F   W+     Q 
Sbjct: 634 DGSTKQSDRMPMIDRFHNDPEVFIFLISTLAGGTGLNLT-GANKVVIFDPNWNPAHDLQA 692

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNAL 198
           ++R       + G  R V VY L+   +++EL+  R   K          ++Q      +
Sbjct: 693 MDR-----AFRFGQTRDVSVYRLLGAGSVEELIYARQIYKQQQMAIGYEASVQTRYFEGI 747

Query: 199 KKETIH 204
           + +T  
Sbjct: 748 QGDTAK 753


>gi|212535616|ref|XP_002147964.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210070363|gb|EEA24453.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 939

 Score = 88.1 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
              KIKAL  I+     A     +V   + S L  ++                   +K  
Sbjct: 752 PSSKIKALIKILTAKGQAEQTKTVVFSQWTSFLDIIEPHLTANDVRFTRIDGKLNSNKRD 811

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+ N+ K  +L A    C  GLNL    N ++    WW      Q I+R+      
Sbjct: 812 QAIAEFSNDPKCKVLLASLNVCSVGLNL-VAANQVILCDSWWAPAIEDQAIDRV-----Y 865

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  R   V+ L+ + ++++ VL+    K  +    L+
Sbjct: 866 RLGQTRETMVWRLVMEGSVEDNVLKIQAAKRELSSTALS 904


>gi|331222641|ref|XP_003323994.1| Chd3-PA [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309302984|gb|EFP79575.1| Chd3-PA [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1668

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 37/204 (18%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---------------ANAAPII 72
              ++  +       YD E     V + +++  E ++E                A    ++
Sbjct: 947  LLMQLRKTLGHPYLYDPEIEPSNVPEAQVQ--ENLVEASAKLIFLRKFIPKLLARGHRML 1004

Query: 73   VAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWN--EGKIPLLFAHPASC 119
            +   F   L  + + F  G  +D                I  +N       +      + 
Sbjct: 1005 IFSQFTMFLD-VMERFLDGENMDYLRLDGNTSQLDRQTRIDHFNRKNSNYNIFLLSTRAG 1063

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    ++++     W+     Q I R       + G K+ V V+ L+ + + +E 
Sbjct: 1064 GAGINL-ATADVVIVLDPDWNPHNDLQAISR-----AHRFGQKKPVSVFKLMVKGSAEEK 1117

Query: 180  VLQRLRTKSTIQDLLLNALKKETI 203
            ++Q  + K  +  L++    +E I
Sbjct: 1118 IVQTGKRKLVLDHLVIQKASEEEI 1141


>gi|296418213|ref|XP_002838736.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634697|emb|CAZ82927.1| unnamed protein product [Tuber melanosporum]
          Length = 1100

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 51   VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
             H  K++ L+ I+E +      I++  H    L  L K     +           +    
Sbjct: 906  FHSYKMQLLKSIVEHSIRLGDKILIFSHGVYTLNYLDKLLEDWKIDFLRLDGKTRMSTRQ 965

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               + +N G+  +      + G GLNL  G N ++ F   W     +Q + R       +
Sbjct: 966  SATKSFNSGRSDVFLVSTEAGGLGLNL-PGANRIIIFDFKWSPMWEEQAVGR-----AYR 1019

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             G K+ VFVY   A  T ++L   ++  KS +Q  +++  K++ +  
Sbjct: 1020 MGQKKHVFVYRFHAVGTFEDLKRNKILFKSQLQSRVVD--KQDPLRT 1064


>gi|126330702|ref|XP_001365797.1| PREDICTED: similar to helicase SMARCAD1 [Monodelphis domestica]
          Length = 1030

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K K LE I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 855  LDSGKFKKLECILSELKEKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 914

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I ++N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 915  HLIDQFNTDMDIFIFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 968

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 969  RVGQTKEVHVIKLISQGTIEESMLKINQQKLKLEQDM 1005


>gi|126277336|ref|XP_001368949.1| PREDICTED: similar to chromodomain helicase DNA binding protein 8
            [Monodelphis domestica]
          Length = 2591

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1114 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1173

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1174 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1232

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1233 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1284


>gi|45199055|ref|NP_986084.1| AFR537Wp [Ashbya gossypii ATCC 10895]
 gi|44985130|gb|AAS53908.1| AFR537Wp [Ashbya gossypii ATCC 10895]
          Length = 1025

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDEE 45
            Q + Y  L  ++I+A N A              +QL               G  Y  +E
Sbjct: 368 MQLQWYRSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDE 427

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
                     +    +  +K   + +++    +  L  L+                 + +
Sbjct: 428 HLIYNSGKMIVLDKLLKRKKKEGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGATSHE 487

Query: 96  KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I E+N  + K  +      + G G+NL    + +V +   W+ +   Q ++R   
Sbjct: 488 ERIAAIDEFNAHDSKKFIFLLTTRAGGLGINL-VTADTVVLYDSDWNPQADLQAMDR--- 543

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+ V VY L+ +N I+E V++R   K  +  L++ 
Sbjct: 544 --AHRIGQKKQVHVYRLVTENAIEEKVIERAAQKLRLDQLVIQ 584


>gi|327289025|ref|XP_003229225.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Anolis
            carolinensis]
          Length = 2037

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1025 DGSSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1084

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + +V +   W+     Q    
Sbjct: 1085 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHNDIQA--- 1140

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1141 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1178


>gi|238504250|ref|XP_002383356.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            flavus NRRL3357]
 gi|220690827|gb|EED47176.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            flavus NRRL3357]
          Length = 1455

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
            K++ L++++ K       +++   F  +L  ++        L           +    I 
Sbjct: 949  KLQLLQLMLPKLRERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMID 1008

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N    P         S G G+NL    + ++     ++  +  Q + R       + G
Sbjct: 1009 QYNAQDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRIG 1062

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             K  V V+ L+ + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1063 QKNKVLVFQLMTRGSAEEKIMQIGKKKMVLDHVLIDRMVSE 1103


>gi|110777198|ref|XP_624414.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
            [Apis mellifera]
          Length = 1966

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 33/182 (18%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
             A N + +T   ++ A   V             + +K L       +   +++       
Sbjct: 1026 TAPNGSYETSALIKAAGKLVLL----------SKMLKKLRD-----DGHRVLIFSQMTKM 1070

Query: 81   LARLQKAFP----QGRTLD------KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYG 128
            L  L+        +   +D      +    I  +N    +  +      + G G+NL   
Sbjct: 1071 LDILEDYLEGEGYKYERIDGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-AT 1129

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++ +   W+     Q       +R  + G    V +Y  + +N+++E V Q  + K 
Sbjct: 1130 ADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKM 1184

Query: 189  TI 190
             +
Sbjct: 1185 ML 1186


>gi|73946641|ref|XP_860308.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 19 [Canis familiaris]
          Length = 1550

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQL---ANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G   +    A +     +QL    N    +   +  KE        
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEVMKENPACSNEA 1022

Query: 53   ----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                  K + L+ I+   +A    +++     S +  ++  F           G T  +D
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|83764573|dbj|BAE54717.1| unnamed protein product [Aspergillus oryzae]
          Length = 1455

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
            K++ L++++ K       +++   F  +L  ++        L           +    I 
Sbjct: 949  KLQLLQLMLPKLRERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMID 1008

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N    P         S G G+NL    + ++     ++  +  Q + R       + G
Sbjct: 1009 QYNAQDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRIG 1062

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             K  V V+ L+ + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1063 QKNKVLVFQLMTRGSAEEKIMQIGKKKMVLDHVLIDRMVSE 1103


>gi|327290729|ref|XP_003230074.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 697

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPC 99
             K+  L  ++EK        +V       L  ++    +              L +   
Sbjct: 428 SGKLVFLVALLEKLQEEGHQTLVFSQSRKMLDIIEHILTKRSFRLMRVDGTVTCLAEREK 487

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++++   K   +        G GL L     +++ F   W+     Q ++R       +
Sbjct: 488 RVRQFQMDKSYSVFLLTTQVGGVGLTLTSATRVVI-FDPSWNPATDAQAVDR-----AYR 541

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  V +Y LI   T++E + +R   K ++
Sbjct: 542 IGQKENVVIYRLITCGTVEEKIYRRQVFKDSL 573


>gi|115442660|ref|XP_001218137.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188006|gb|EAU29706.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1063

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F                D     + E+N + +  +   
Sbjct: 688 ANGDKVLVFSHSVRLLKMLQMLFHHTSYNVSYLDGSMNYDDRAKAVNEFNADPRQFVFLI 747

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+     ++V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 748 STRSGGVGLNITSANKVVVM-DPNWNPSYDLQA-----QDRAYRIGQSRDVEVFRLISAG 801

Query: 175 TIDELVLQRLRTKSTIQD 192
           T++E+V  R   K    +
Sbjct: 802 TVEEIVYARQIYKQQQAN 819


>gi|195144320|ref|XP_002013144.1| GL23550 [Drosophila persimilis]
 gi|194102087|gb|EDW24130.1| GL23550 [Drosophila persimilis]
          Length = 1003

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--RTLD--------KDPCTIQEWN 105
           I+ L+ I+E      +IV   + S L  +++   +   +TLD        +    ++++N
Sbjct: 835 IQKLQSILEGTTDK-VIVVSQWTSFLDIIREYLNEHEWQTLDFNGKMDATEREVVLKDFN 893

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +L     S G GLNL    N L+   L W+ +  +Q  +RI      + G ++
Sbjct: 894 VIQNNKRILLLSLTSGGVGLNLNV-ANHLLLVDLHWNPQLERQAQDRI-----YRYGQQK 947

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             F+Y  + Q+T+++ +      K  I +++L 
Sbjct: 948 PTFIYRFMCQDTVEQRIKALQDYKLEIANVVLQ 980


>gi|159128918|gb|EDP54032.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           fumigatus A1163]
          Length = 1008

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              T ++    + E+N + K  +   
Sbjct: 633 ANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMTYEERTKVVDEFNSDPKQFVFLI 692

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 693 STRSGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQSRNVEVFRLISVG 746

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 747 TIEEIVYARQIYKQQQAN 764


>gi|119482550|ref|XP_001261303.1| DNA excision repair protein Rad16, putative [Neosartorya fischeri
           NRRL 181]
 gi|119409458|gb|EAW19406.1| DNA excision repair protein Rad16, putative [Neosartorya fischeri
           NRRL 181]
          Length = 977

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  +      IV   F S L     RL++A      LD      Q
Sbjct: 801 TSSTKIEMLVYELYKLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 860

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 861 RQKSIDYFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 915

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  LN  + E +
Sbjct: 916 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTLNKDQGEAL 962


>gi|255551623|ref|XP_002516857.1| conserved hypothetical protein [Ricinus communis]
 gi|223543945|gb|EEF45471.1| conserved hypothetical protein [Ricinus communis]
          Length = 3502

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--FPQGRTL--------DKDPCTIQ 102
            K++ L+ I+ K  A    ++        L  +++     + R L        ++    I+
Sbjct: 1318 KLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLTMKKYRYLRLDGHTSGNERGALIE 1377

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1378 QFNKSNSPYFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1431

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V V       T++E V      K  + +  + A
Sbjct: 1432 QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1468


>gi|224013532|ref|XP_002296430.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968782|gb|EED87126.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 119

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 72  IVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEGK--IPLLFAHPASC 119
           +V       L  ++K F           G+T +K     +  +N+ +  + ++     + 
Sbjct: 1   LVFSQSTKMLDIMEKVFKSDDVSFLRIDGKTAEKSRQQKVDAFNDKESNVDIMLLSTKAA 60

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GL L  G +  + F   W+     Q I+R       + G  + V VY +I   T++E 
Sbjct: 61  GVGLTL-NGADRAIIFDPSWNPSTDAQAIDRC-----YRIGQLKNVTVYRMICAGTVEEK 114

Query: 180 VLQRL 184
           + ++ 
Sbjct: 115 MYEKQ 119


>gi|34526499|dbj|BAC85127.1| FLJ00266 protein [Homo sapiens]
          Length = 1544

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 78  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 137

Query: 94  L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 138 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 196

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 197 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 248


>gi|301613323|ref|XP_002936158.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7, partial
            [Xenopus (Silurana) tropicalis]
          Length = 2908

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 42/209 (20%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K   +F+    CD     ++A   A+   K                   + D+ +  L+ 
Sbjct: 1192 KILEEFRETHNCDPSDFQLQAMTQAA--GKL-----------------VLIDKLLPKLK- 1231

Query: 62   IIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDK-----DPCTIQEWNEGKIP- 110
                A    +++       L       +Q+ +P  R   +         I  +++     
Sbjct: 1232 ----AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1287

Query: 111  -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+NL    +  + F   W+ +   Q   R       + G  ++V +Y 
Sbjct: 1288 FVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKSVKIYR 1341

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            LI +N+ +  +  +   K  +   +L ++
Sbjct: 1342 LITRNSYEREMFDKASLKLGLDKAVLQSM 1370


>gi|294656285|ref|XP_458541.2| DEHA2D01672p [Debaryomyces hansenii CBS767]
 gi|199431348|emb|CAG86673.2| DEHA2D01672p [Debaryomyces hansenii]
          Length = 1041

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--EEKHWKEVH 52
             Q + Y  L  ++I+A N                +QL    N    +D  E        
Sbjct: 377 DMQIKWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 436

Query: 53  DE------KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
           +       K+  L+ +++K     + +++    +  L  L+              G T  
Sbjct: 437 EHLVFNAGKMIILDKMLKKFKKEGSRVLIFSQMSRLLDILEDYCYLRDYSYCRIDGSTSH 496

Query: 96  KDP-CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I ++N  +    +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 497 EDRIEAIDQYNMPDSDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 553

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V VY  + +N I+E VL R   K  +  L++ 
Sbjct: 554 ---AHRIGQKKQVKVYRFVTENAIEEKVLDRAAQKLRLDQLVIQ 594


>gi|21622371|emb|CAD37001.1| related to DNA repair protein RAD26 [Neurospora crassa]
          Length = 1178

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
              ++V  H    L  LQ  F              + ++    + E+N + +  +     
Sbjct: 597 GDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGALSYEERQRVVDEFNTDPRQFVFLIST 656

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N +V F   W+     Q        R  + G  R V V+ L++  TI
Sbjct: 657 KAGGVGLNIT-SANKVVIFDPHWNPSYDLQA-----QDRAYRIGQIRDVDVFRLVSAGTI 710

Query: 177 DELVLQRLRTKSTIQD 192
           +E+V  R   K    +
Sbjct: 711 EEIVYARQIYKQQQAN 726


>gi|323338667|gb|EGA79883.1| Rad16p [Saccharomyces cerevisiae Vin13]
          Length = 611

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 431 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 488

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 489 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 547

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 548 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 591


>gi|311258350|ref|XP_003127574.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Sus
           scrofa]
          Length = 1641

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 617 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 676

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 677 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 732

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 733 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 770


>gi|303316021|ref|XP_003068015.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107691|gb|EER25870.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1142

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K++ L  ++++   N   I++   F   +  L++             G T 
Sbjct: 931  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVMDILEQVLETLEIRFFRLDGTTS 990

Query: 95   DKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I    + +  +P+      + G G+NL    N ++ F   ++ ++  Q      
Sbjct: 991  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQDDIQA----- 1044

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1045 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLVLDQRV 1086


>gi|189240851|ref|XP_001812556.1| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3
            [Tribolium castaneum]
          Length = 1966

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLL 112
            +     +++       L  L+          +      T       I  +N    +  + 
Sbjct: 1057 REQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGSSRQEAIDRFNAPGAQQFVF 1116

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + 
Sbjct: 1117 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 1170

Query: 173  QNTIDELVLQRLRTKSTI 190
            +N+++E V Q  + K  +
Sbjct: 1171 RNSVEERVTQVAKRKMML 1188


>gi|73946629|ref|XP_860094.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 13 [Canis familiaris]
          Length = 1550

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
             Y   Q +      G   +    A +     +QL     +    +H +++          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEDIFCPVHHEKST 1022

Query: 53   ----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                  K + L+ I+   +A    +++     S +  ++  F           G T  +D
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|327292821|ref|XP_003231108.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326466738|gb|EGD92191.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1143

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             K W  ++  K+  L  +++   AN   I+V   F   +  L++             G+T
Sbjct: 950  NKEW--MNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKT 1007

Query: 94   LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +D  +I   ++E  ++P+      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 1008 SVEDRQSILDAFHEQVEVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 1062

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|321479460|gb|EFX90416.1| hypothetical protein DAPPUDRAFT_232072 [Daphnia pulex]
          Length = 2083

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L  ++   K     +++       L  L+          +    G 
Sbjct: 1135 ETTALVKASGKLVLLSKMLRVLKEQGHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGI 1194

Query: 93   TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    P  +      + G G+NL    + +V +   W+     Q    
Sbjct: 1195 TGTLRQDAIDRFNAPGAPQFVFLLSTRAGGLGINL-ATADTVVIYDSDWNPHNDIQA--- 1250

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + +N+++E V Q  + K  +
Sbjct: 1251 --FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKKKMML 1288


>gi|290989143|ref|XP_002677202.1| predicted protein [Naegleria gruberi]
 gi|284090808|gb|EFC44458.1| predicted protein [Naegleria gruberi]
          Length = 1068

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 23/189 (12%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAV---YYDEEKHWKEVHDEKIKALEVIIEKA--N 67
             L   +++     +   K  Q     +     +E          K + ++ ++EK+  +
Sbjct: 719 MTLDMSDLDEKRQRALQRKLRQAQEEMIKKRIREEPIENILAKSTKAQMIKQLVEKSIDD 778

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRT--LDKDPCTIQEWNEGK-IPLLFAH 115
              +++   +   L  +         +     G      +    +  +N+ K I      
Sbjct: 779 GHKVLIFSQYTRMLDIIGVILKSMNIKYNRIDGSVTKYQERLSLVDSFNQKKNIKCFLLS 838

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    + ++     ++    +Q I+R       + G ++ V VY LI  +T
Sbjct: 839 SQAGGVGLNLT-AASRVIIVEPNFNPSIDEQAIDR-----AYRIGQRQNVIVYRLICSST 892

Query: 176 IDELVLQRL 184
           I+E + +RL
Sbjct: 893 IEEYIYKRL 901


>gi|255726894|ref|XP_002548373.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134297|gb|EER33852.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1043

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 31/195 (15%)

Query: 32  CLQLANGA--VYYD--EEKHWKEVHDE--KIKALEVIIE--KANAAPIIVAYHFNSDLAR 83
             ++ N    VY D   +K          K++ L+ +++  ++     ++       L  
Sbjct: 596 LRKICNHPDLVYRDAMMKKKSYGDPSRSGKMQVLKNLLQIWQSEDHKTLLFCQTRQMLDI 655

Query: 84  LQK----------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
           L+K                       + +    + ++N +  + +        G G+NL 
Sbjct: 656 LEKFVANLPLLNGGEFNYLRMDGSTPISRRQMLVDKFNRDPNMHVFLLTTKVGGLGVNLT 715

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G + ++ +   W+     Q  ER       + G K+ + +Y L+   +I+E +  R   
Sbjct: 716 -GADRVIIYDPDWNPSTDIQARERAW-----RLGQKKDITIYRLMTTGSIEEKIYHRQIF 769

Query: 187 KSTIQDLLLNALKKE 201
           K+ + + +L   K+ 
Sbjct: 770 KTFLTNKILKDPKQR 784


>gi|70989315|ref|XP_749507.1| DNA excision repair protein (Rad26L) [Aspergillus fumigatus Af293]
 gi|66847138|gb|EAL87469.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           fumigatus Af293]
          Length = 1008

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              T ++    + E+N + K  +   
Sbjct: 633 ANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMTYEERTKVVDEFNSDPKQFVFLI 692

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 693 STRSGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQSRNVEVFRLISVG 746

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 747 TIEEIVYARQIYKQQQAN 764


>gi|301784895|ref|XP_002927862.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like
            [Ailuropoda melanoleuca]
          Length = 2583

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1115 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1174

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1175 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1233

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1234 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|282165704|ref|NP_001164100.1| chromodomain-helicase-DNA-binding protein 8 isoform 1 [Homo sapiens]
 gi|317373586|sp|Q9HCK8|CHD8_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Helicase with SNF2 domain 1
          Length = 2581

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1115 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1174

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1175 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1233

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1234 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|156545320|ref|XP_001605650.1| PREDICTED: similar to chromodomain helicase DNA binding protein
            [Nasonia vitripennis]
          Length = 1997

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQEWNEG--KIPLL 112
            + +   +++       L  L+        +   +D      +    I  +N    +  + 
Sbjct: 1044 RDDGHRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGNITGTQRQEAIDRFNAPGAQQFVF 1103

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + 
Sbjct: 1104 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 1157

Query: 173  QNTIDELVLQRLRTKSTI 190
            +N+++E V Q  + K  +
Sbjct: 1158 RNSVEERVTQVAKRKMML 1175


>gi|154309786|ref|XP_001554226.1| hypothetical protein BC1G_07363 [Botryotinia fuckeliana B05.10]
 gi|150851824|gb|EDN27017.1| hypothetical protein BC1G_07363 [Botryotinia fuckeliana B05.10]
          Length = 2080

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYH--FNSDLARL-------QKAFPQGRT-LDKDPCT 100
              K++ L  I++ +      ++V        D   +       + A   G+T ++K    
Sbjct: 1461 SNKVRILCQILDASRAVGDKVLVFSQTLVTLDFLEIMCRDQGRKYARLDGKTAMNKRQAL 1520

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N   + L      + G GLNL YG N +V F   ++    +Q I R       + G
Sbjct: 1521 VKDFNSNDLELYLISTTAGGLGLNL-YGANRVVIFDFKYNPINEEQAIGR-----AYRIG 1574

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K+ VFVY L+A  T +  +  +   K+ +   +++
Sbjct: 1575 QKKHVFVYRLMAAGTFEGSIQNKAVFKTQLASRVVD 1610


>gi|270013510|gb|EFA09958.1| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]
          Length = 1969

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLL 112
            +     +++       L  L+          +      T       I  +N    +  + 
Sbjct: 1060 REQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGSSRQEAIDRFNAPGAQQFVF 1119

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + 
Sbjct: 1120 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 1173

Query: 173  QNTIDELVLQRLRTKSTI 190
            +N+++E V Q  + K  +
Sbjct: 1174 RNSVEERVTQVAKRKMML 1191


>gi|158293462|ref|XP_314800.4| AGAP008698-PA [Anopheles gambiae str. PEST]
 gi|157016718|gb|EAA10171.4| AGAP008698-PA [Anopheles gambiae str. PEST]
          Length = 2083

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCT 100
              K+  L+ ++ +       +++       L  L +   +         G    +     
Sbjct: 913  SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELRKQA 972

Query: 101  IQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N EG           + G G+NL    + ++ F   W+ +   Q   R       +
Sbjct: 973  LDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHR 1026

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K  V +Y L+  ++++E +++R + K  +  L++  +
Sbjct: 1027 IGQKNQVNIYRLVTAHSVEENIVERAKQKMVLDHLVIQRM 1066


>gi|326669481|ref|XP_001922536.3| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like [Danio
           rerio]
          Length = 2485

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 792 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 851

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 852 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 905

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 906 RNSYEREMFDRASLKLGLDKAVLQSM 931


>gi|242047292|ref|XP_002461392.1| hypothetical protein SORBIDRAFT_02g001960 [Sorghum bicolor]
 gi|241924769|gb|EER97913.1| hypothetical protein SORBIDRAFT_02g001960 [Sorghum bicolor]
          Length = 778

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
           ++ D  +  L           ++V   +   L  ++                  L++   
Sbjct: 541 QLFDRLLNYLIE-----QKHKVLVFSQWTKVLDIIEYYLDSKGHDVCRIDGSVKLEERRR 595

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N     + +      + G G+NL    +  + +   W+ +   Q ++R       
Sbjct: 596 QIAEFNDLNSSMRIFLLSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----H 649

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G  R V VY L   ++++  ++++   K  ++ +++
Sbjct: 650 RIGQTRPVHVYRLATSHSVEGRIIKKAFGKLKLEHVVI 687


>gi|325119107|emb|CBZ54659.1| putative SNF2 family N-terminal domain containing protein [Neospora
            caninum Liverpool]
          Length = 2550

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 57   KALEVIIEKANAA--PIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEW 104
               E +I++       ++V   F   L  L+     + +   R             I+++
Sbjct: 1222 DKQEFVIDRTQPKAQRLLVFTQFQLVLDELEAYCHYRGWKYLRLDGSTNKFVRELDIRDF 1281

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N       +      + G G+NL    N +V +   W+     Q I+R       + G +
Sbjct: 1282 NSENSTYFVYLISTRAGGLGINLT-AANHVVLYDHDWNPFIDLQAIDR-----AHRIGQQ 1335

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            RAV V+ L+ + T++E +  R   K  +  LL+ 
Sbjct: 1336 RAVHVWSLVNEWTVEERMAFRREQKLRLDKLLVQ 1369


>gi|297694660|ref|XP_002824590.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like isoform 1
            [Pongo abelii]
          Length = 2581

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1115 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1174

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1175 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1233

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1234 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|115634727|ref|XP_787293.2| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
 gi|115924449|ref|XP_001196643.1| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
          Length = 600

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 62/245 (25%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG----------------AVYYDEE 45
           K Y +F                N     ++  Q                     +  D  
Sbjct: 369 KIYDQF-----LQQSRSTSNKTNILVILLRLRQCCCHLSLLKELPDQESCEMDGIELDLV 423

Query: 46  KHWKEVH------------DEKIKALEVIIEKAN--------AAPIIVAYHFNSDLARLQ 85
           +  KE+               KIK +  ++EK             ++V   +   L  ++
Sbjct: 424 RQMKEMGLGDMTLYPPSFLSTKIKFVINLLEKIRAAGPADRPEKSVLV-SQWTGMLDVVE 482

Query: 86  KAFPQGRTL----------DKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNIL 132
               +              ++    ++++N    G+  ++     + G  LNL  GGN L
Sbjct: 483 HHLKEAGFKCWSIDGDVSPNERDEALKDFNYNPRGR-QIMLVSLRTGGATLNL-SGGNHL 540

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            F  + W+     Q  +RI      + G  R V ++  I  +TI+  + +  + K  + +
Sbjct: 541 FFLDMHWNPALEDQACDRI-----YRIGQTRKVHIHKFICSDTIEYRISELQKKKKKLAN 595

Query: 193 LLLNA 197
            +L  
Sbjct: 596 DVLTG 600


>gi|311261060|ref|XP_001928941.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8 [Sus scrofa]
 gi|311261079|ref|XP_001929167.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8 [Sus scrofa]
          Length = 2583

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1115 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1174

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1175 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1233

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1234 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|255720466|ref|XP_002556513.1| KLTH0H15158p [Lachancea thermotolerans]
 gi|238942479|emb|CAR30651.1| KLTH0H15158p [Lachancea thermotolerans]
          Length = 1021

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
             Q + Y  L  ++++A N A              +QL               G  Y  +
Sbjct: 368 DMQVQWYKSLLEKDLDAVNGAIGKREGNTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 427

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ +++  +   + +++    +  L  L+              G T
Sbjct: 428 EHLI--FNAGKMIVLDKLLKKKREAGSRVLIFSQMSRLLDILEDYCFFREYSYCRIDGST 485

Query: 94  LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I ++NE      +      + G G+NL    + +V +   W+ +   Q ++R
Sbjct: 486 SHEERIDAIDQFNEPNSDKFIFLLTTRAGGLGINL-VTADTVVLYDSDWNPQADLQAMDR 544

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V+VY  + +N I+E V++R   K  +  L++ 
Sbjct: 545 -----AHRIGQKKQVYVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 585


>gi|73946643|ref|XP_860337.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 20 [Canis familiaris]
          Length = 1550

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEV---------- 51
             Y   Q +      G   +    A +     +QL     +    +H + +          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEGLVRPPASRSCR 1022

Query: 52   ---HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                  K + L+ I+   +A    +++     S +  ++  F           G T  +D
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|116192043|ref|XP_001221834.1| hypothetical protein CHGG_05739 [Chaetomium globosum CBS 148.51]
 gi|88181652|gb|EAQ89120.1| hypothetical protein CHGG_05739 [Chaetomium globosum CBS 148.51]
          Length = 487

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 84  LQKAFPQGRTLDKDPCTI-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           +      G T  +D   +  E+N    P  +      + G GLNLQ   + ++ +   W+
Sbjct: 13  ITYLRLDGTTKSEDRSDLLYEFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWN 71

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +  Q        R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 72  PHQDLQA-----QDRAHRIGQKNEVRILRLISSASVEEKILERARYKLDMDGKVIQAGR 125


>gi|302502694|ref|XP_003013308.1| hypothetical protein ARB_00493 [Arthroderma benhamiae CBS 112371]
 gi|291176871|gb|EFE32668.1| hypothetical protein ARB_00493 [Arthroderma benhamiae CBS 112371]
          Length = 1110

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN---------SDLARLQKAFPQGRT 93
             K W  ++  K+  L  +++   AN   I+V   F           +  +++     G+T
Sbjct: 917  NKEW--MNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILELVLETQKIKFFRLDGKT 974

Query: 94   LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +D  +I   ++E   IP+      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 975  SVEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 1029

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1030 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1071


>gi|254576891|ref|XP_002494432.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
 gi|238937321|emb|CAR25499.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
          Length = 1343

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEK--ANAAPIIVAY 75
           K ++  ++ N    +DE +       +          K + L+ ++ K  A+   +++ +
Sbjct: 751 KIMQLRKICNHPFVFDEVESVINPSRQNTPLLYRVAGKFELLDRVLPKFKASGHRVLMFF 810

Query: 76  H------FNSDLARLQ---KAFPQGRTLDKDPC-TIQEWN--EGKIPLLFAHPASCGHGL 123
                     D  RL+        G T  +D    ++E+N              + G GL
Sbjct: 811 QMTQVMDIMEDFLRLRDHKYMRLDGATKTEDRQEMLREFNAENSDYFCFLLSTRAGGLGL 870

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +  Q        R  + G K  V +  LI  ++++E++L+R
Sbjct: 871 NLQ-SADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITTDSVEEVILER 924

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 925 AMQKLDIDGKVIQAGK 940


>gi|162464313|ref|NP_001105087.1| chromatin complex subunit A101 [Zea mays]
 gi|18463957|gb|AAL73042.1|AF461813_1 chromatin complex subunit A101 [Zea mays]
          Length = 779

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 23/158 (14%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
           ++ D  +  L      A    ++V   +   L  ++                  L++   
Sbjct: 538 QLFDRLLNFLM-----AQKHKVLVFSQWTKVLDIIEYYLDSKGHAVCRIDGNVKLEERRR 592

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N     + +      + G G+NL    +  + +   W+ +   Q ++R       
Sbjct: 593 QIAEFNDVNSSMRIFLLSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----H 646

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G  R V VY L   ++++  +++R   K  ++ +++
Sbjct: 647 RIGQTRPVHVYRLATSHSVEGRMIKRAFGKLKLEHVVI 684


>gi|226706291|sp|B5DE69|CHD8_XENTR RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8
          Length = 2184

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            +A    +++       L  L+    Q R L          +     I  ++       + 
Sbjct: 1090 RAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVF 1149

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV +Y LI 
Sbjct: 1150 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKIYRLIT 1203

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +N+ +  +  +   K  +   +L ++     H+
Sbjct: 1204 RNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1236


>gi|114651881|ref|XP_001153522.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 3 [Pan
            troglodytes]
          Length = 2556

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1090 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1149

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1150 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1208

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1209 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1260


>gi|22328039|ref|NP_201200.2| CHR24 (chromatin remodeling 24); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana]
 gi|22655364|gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana]
 gi|332010436|gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana]
          Length = 1090

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF--------- 88
           V  D+ +   +    K+  +  ++E        +++       L  +Q +          
Sbjct: 718 VDTDDFQTKNDSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLR 777

Query: 89  PQGRTLDKDP-CTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T   D   T++E+ EG + P+        G GL L    + ++     W+     Q
Sbjct: 778 IDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQ 836

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++R       + G  + V VY L+   T++E + ++   K  +
Sbjct: 837 SVDR-----AYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGL 875


>gi|242011216|ref|XP_002426351.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510428|gb|EEB13613.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 4944

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            K+N   +++       L  L+              GR   D     I  +        + 
Sbjct: 2452 KSNGHRVLIFSQMVKCLDILEDYLIYRKYSFERIDGRIRGDLRQAAIDRFCRPDSDRFVF 2511

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V VY LI 
Sbjct: 2512 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLIC 2565

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2566 RNTYEREMFDKASLKLGLDKAVLQSM 2591


>gi|33864422|ref|NP_895982.1| SNF2/helicase domain-containing protein [Prochlorococcus marinus str.
            MIT 9313]
 gi|33641202|emb|CAE22332.1| SNF2 related domain:DEAD/DEAH box helicase [Prochlorococcus marinus
            str. MIT 9313]
          Length = 1099

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 83   RLQKAFPQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R +  F  G T   +    +  + E      L      + G GLNL    + +     WW
Sbjct: 966  RFEVPFLHGSTSKTERQAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTRASH-VFHVDRWW 1024

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +     Q  +R       + G    V V+  I   +++E + + +R KS + + ++
Sbjct: 1025 NPAVENQATDR-----AYRIGQTSRVMVHKFITSGSVEEKIDRMIREKSRLAEDII 1075


>gi|322499769|emb|CBZ34843.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1044

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
               K++ L+ ++ +  A     ++  +F + L  L+          +         +  
Sbjct: 601 DPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYERLDGSCNRVERE 660

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            ++  +N       L      + G G+ L  G + ++ F            ++R    R 
Sbjct: 661 LSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFD-----AHFNPQLDRQAADRA 714

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 715 HRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 758


>gi|322492504|emb|CBZ27779.1| putative helicase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1044

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
               K++ L+ ++ +  A     ++  +F + L  L+          +         +  
Sbjct: 598 DPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYERLDGSCNRVERE 657

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            ++  +N       L      + G G+ L  G + ++ F            ++R    R 
Sbjct: 658 LSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFD-----AHFNPQLDRQAADRA 711

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 712 HRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 755


>gi|270007595|gb|EFA04043.1| hypothetical protein TcasGA2_TC014275 [Tribolium castaneum]
          Length = 4075

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIP--LL 112
            KAN   +++       L  L+              GR   +     I  ++       + 
Sbjct: 1919 KANGHRVLIFSQMVRCLDILEDYLMFRKYPFERIDGRIRGNLRQAAIDRFSRPDSDRFVF 1978

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 1979 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 2032

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2033 RNTYEREMFDKASLKLGLDKAILQSM 2058


>gi|198420785|ref|XP_002121862.1| PREDICTED: similar to DNA excision repair protein ERCC-6
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB) [Ciona intestinalis]
          Length = 1155

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP--------- 89
           Y D  +        K+  +E ++   K     +++       L  L+             
Sbjct: 329 YGDSRRFGYWRRSGKMVVVESLLRIWKKQGKKVLLFTQSRKMLGILEDFVKSRSYCYLTM 388

Query: 90  --QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             Q     + P   +   +  I +        G G+NL  G + +V +   W+     Q 
Sbjct: 389 HGQTSVQARQPLVKKFNEDPSIFVFILTTRVGGLGVNL-IGADRVVIYDPDWNPSTDTQA 447

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ER       + G  + V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 448 QERSW-----RIGQTKQVTIYRLVTSGTIEEKIYHRQIFKQFMTNRVLKDPKQR 496


>gi|164656625|ref|XP_001729440.1| hypothetical protein MGL_3475 [Malassezia globosa CBS 7966]
 gi|159103331|gb|EDP42226.1| hypothetical protein MGL_3475 [Malassezia globosa CBS 7966]
          Length = 1687

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 69   APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
              +++       L  +++                   + D+    +Q +N +  I +L  
Sbjct: 1476 HRVLIFCQMKQMLDVIERDLFRALMPSVTYLRLDGSVSSDRRHGIVQSFNADPSIDILLL 1535

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +  G GL L  G + ++F    W+  +  Q ++R       + G K+ V VY LI ++
Sbjct: 1536 TTSVGGLGLTLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRLGQKKVVNVYRLITRD 1589

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T++  ++   + K  I + ++
Sbjct: 1590 TLEANIMGLQQFKMNIANSVV 1610


>gi|146089132|ref|XP_001466244.1| helicase  [Leishmania infantum JPCM5]
 gi|134070346|emb|CAM68683.1| putative helicase-like protein [Leishmania infantum JPCM5]
          Length = 1044

 Score = 88.1 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
               K++ L+ ++ +  A     ++  +F + L  L+          +         +  
Sbjct: 601 DPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYERLDGSCNRVERE 660

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            ++  +N       L      + G G+ L  G + ++ F            ++R    R 
Sbjct: 661 LSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFD-----AHFNPQLDRQAADRA 714

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 715 HRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 758


>gi|212549607|ref|NP_001131089.1| chromodomain-helicase-DNA-binding protein 8 [Xenopus (Silurana)
            tropicalis]
 gi|197246330|gb|AAI68549.1| Unknown (protein for MGC:184754) [Xenopus (Silurana) tropicalis]
          Length = 2179

 Score = 88.1 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            +A    +++       L  L+    Q R L          +     I  ++       + 
Sbjct: 1085 RAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVF 1144

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV +Y LI 
Sbjct: 1145 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKIYRLIT 1198

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +N+ +  +  +   K  +   +L ++     H+
Sbjct: 1199 RNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1231


>gi|146417440|ref|XP_001484689.1| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 88.1 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 669 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQG 726

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D           + +      + G  LNL    + +     WW+     Q ++
Sbjct: 727 SMSPQQRDNTIRHFMENTGVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 785

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ + +  +N
Sbjct: 786 RV-----HRIGQKRPIRITRFCIEDSIELKIIELQEKKANMINATIN 827


>gi|50551961|ref|XP_503455.1| YALI0E02332p [Yarrowia lipolytica]
 gi|49649324|emb|CAG79034.1| YALI0E02332p [Yarrowia lipolytica]
          Length = 1028

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP-CTIQEWN 105
           +  L   I++   + +++    +  L  L         +     G+T  +D    I  +N
Sbjct: 465 LDKLLKRIQE-QGSRVLIFSQMSRVLDILEDYCLFRGYKYCRIDGQTAHEDRINAIDAYN 523

Query: 106 E--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   +  +      + G G+NL    + +V +   W+ +   Q ++R       + G  +
Sbjct: 524 KEGSEKFVFLLTTRAGGLGINLTT-ADQVVLYDSDWNPQADLQAMDR-----AHRIGQTK 577

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V+VY  I +N ++E V++R   K  +  L++   + +
Sbjct: 578 QVYVYRFITENAVEEKVIERATQKLRLDKLVIQQGRSQ 615


>gi|46111685|ref|XP_382900.1| hypothetical protein FG02724.1 [Gibberella zeae PH-1]
 gi|85540718|sp|Q4IJ84|RAD5_GIBZE RecName: Full=DNA repair protein RAD5
          Length = 1154

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 52   HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
               K+ AL      +  +      +V   F S L+ ++ A  +                 
Sbjct: 982  SSAKVVALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKAR 1041

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + E+ E K   +L     + G GLNL   G  +     WW      Q I+R+     
Sbjct: 1042 AAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAG-RVFMMDPWWSFAVEAQAIDRV----- 1095

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G +  V V   + + +++E +L+    K  I   L
Sbjct: 1096 HRMGQEAEVQVKRFVVKESVEERMLKVQERKKFIATSL 1133


>gi|258564558|ref|XP_002583024.1| DNA repair protein RAD16 [Uncinocarpus reesii 1704]
 gi|237908531|gb|EEP82932.1| DNA repair protein RAD16 [Uncinocarpus reesii 1704]
          Length = 896

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL +A      LD     +Q
Sbjct: 720 TSSTKIEMLVYDLYKLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQ 779

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 780 RQKSIDYFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 834

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 835 -HRIGQRRPCVITKLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 881


>gi|189208600|ref|XP_001940633.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976726|gb|EDU43352.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1311

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEK-------HWKEVHDEKIKALEVIIE--KANAAPIIVAYHF 77
           +K ++ LQLA  + + D  +         +     K K L  +++   +N   +++  H 
Sbjct: 610 AKDLQTLQLACPSTFKDLFQIRDNILVQSQREFCGKWKVLRRLLDFWHSNGDKVLIFSHS 669

Query: 78  NSDLARLQKAFPQGRTL------------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              L  L+  F    T             +     + ++N +    +      + G GLN
Sbjct: 670 VRLLRLLRGLFDVDGTKYNFSYLDGSMKYEDRSQAVADFNADPNQFVFLISTKAGGVGLN 729

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +     ++V     W+     Q        R  + G  R V V+ L++  TI+E+V  R 
Sbjct: 730 ITSANKVVVM-DPHWNPAYDLQA-----QDRAYRIGQTRNVEVFRLVSSGTIEEVVYARQ 783

Query: 185 RTKSTIQD 192
             K    +
Sbjct: 784 IYKQQQAN 791


>gi|168022943|ref|XP_001763998.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162684737|gb|EDQ71137.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 719

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-LLFAHP 116
              +++       L  L+    +          G         I+ +NE K   +     
Sbjct: 481 GHKVLIFSQMTKILDLLEYYLEERGHNPCRIDGGVQQSVRQEQIRSFNEEKSRFVFLLST 540

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ +   W+     Q ++R       + G  R V VY L    ++
Sbjct: 541 RAGGLGINLT-AADTVILYDSDWNPHMDMQAMDRC-----HRIGQTRPVHVYRLATAKSV 594

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +  +L+    K  ++ L++ 
Sbjct: 595 ECHMLKVATGKLKLEHLVIE 614


>gi|123445199|ref|XP_001311362.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121893168|gb|EAX98432.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1639

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 19/190 (10%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF 77
           I     A    K  QL       + E         K+  ++ ++         +++    
Sbjct: 532 ITGAEDAILIEKMQQLGLKERTNEFELETLIRTSGKLILVDKLLANLKKEGHRVLIFSQM 591

Query: 78  NSDLARLQ---------KAFPQGRTLDKDPCT-IQEWNE-GKIPLLFAHPASCGHGLNLQ 126
              L  LQ              G    KD    I ++ E   I +      + G G+NL 
Sbjct: 592 TKMLDLLQDMLTYRNYKYRRIDGTVRGKDRQASIDDFQEQEDIFVFLLCTRAGGVGINLT 651

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +  + +   W+ +   Q   R       + G  + V +Y LI +N+ +  +      
Sbjct: 652 -SADRCIIYDSDWNPQNDIQATARC-----HRIGQTKEVKMYRLITKNSYERSMFDTASK 705

Query: 187 KSTIQDLLLN 196
           K  +   +L 
Sbjct: 706 KLGLDKAILE 715


>gi|71018359|ref|XP_759410.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
 gi|46098957|gb|EAK84190.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
          Length = 1054

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 52   HDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQGRTL----------DKD 97
               KI+AL E + + +++   I  +V   F + L  +     +              +  
Sbjct: 881  SSTKIEALVEELTQLRSDDKTIKSLVFSQFVNFLDLIAFRLQRAGFQICRLEGNMSPEAR 940

Query: 98   PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              TI+ +     + +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 941  NRTIKHFMENPGVTVFLVSLKAGGVALNLTE-ASRVYLMDPWWNPSVEVQAMDRI----- 994

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R + V  ++ +N+I+  +++    KS + +  +
Sbjct: 995  HRLGQHRPIIVKRMVIENSIESRIIELQNKKSAMIEAAI 1033


>gi|296214425|ref|XP_002753816.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8 isoform 1
            [Callithrix jacchus]
          Length = 2583

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1115 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1174

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1175 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1233

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1234 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|242023690|ref|XP_002432264.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
            humanus corporis]
 gi|212517673|gb|EEB19526.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
            humanus corporis]
          Length = 1999

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
            K L+++ E+     +++       L  L+          +      T +     I  +N 
Sbjct: 1032 KMLKLLREQ--GHRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGSITGNLRQEAIDRFNA 1089

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P         + G G+NL    + ++ +   W+     Q       +R  + G    
Sbjct: 1090 PGAPQFAFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQSNK 1143

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTI 190
            V +Y  + +N+++E V Q  + K  +
Sbjct: 1144 VMIYRFVTRNSVEERVTQVAKRKMML 1169


>gi|164423632|ref|XP_962645.2| hypothetical protein NCU07975 [Neurospora crassa OR74A]
 gi|157070175|gb|EAA33409.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 898

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 21/176 (11%)

Query: 30  VKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQ 85
            K L+ A   +   DEE+   E    K +A+  +++       + II+   + S L  +Q
Sbjct: 701 DKLLEPAPEHSATQDEEELESETKSSKTEAVLALVKGTLDKEGSKIIIFSQWTSFLTIIQ 760

Query: 86  KAFPQGR-----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
               +                +D        +    +L A    C  GLNL    + ++ 
Sbjct: 761 HQLDEAGYTYTRIDGSMNAAQRDAAIRALDYDPNTRILLASLGVCSVGLNL-VSADTVIL 819

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              WW      Q ++R+      + G  R   V+ L+  N+I+E VL   + K  +
Sbjct: 820 ADSWWAPAIEDQAVDRV-----HRLGQTRPTTVWRLVMDNSIEERVLDIQKEKREL 870


>gi|298385406|ref|ZP_06994964.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
 gi|298261547|gb|EFI04413.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
          Length = 502

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT-------LDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +IV    +  +  LQK FP+  T       ++K        N   + L+     + G
Sbjct: 349 GKKLIVFCSLHEIVDELQKVFPKAVTVTGRDSAINKQASVDAFQNNPNVQLIICSIKAAG 408

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    N + F  L W   +  Q  +R       + G K  V  YYL+ + TID  +
Sbjct: 409 VGLTLTASSN-VAFIELAWTYADCCQCEDR-----AHRIGQKDNVTCYYLLGRGTIDHTI 462

Query: 181 LQRLRTKSTIQDLLLNA 197
              +  K +I   ++N+
Sbjct: 463 YSLIHRKKSIASEIMNS 479


>gi|240278273|gb|EER41780.1| transcription termination factor 2 [Ajellomyces capsulatus H143]
          Length = 536

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGR------ 92
           Y       K +    +  +E   E  + API  IV   + S L  ++ A           
Sbjct: 351 YEGPHTKTKALISHLLDTIEESKEAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTR 410

Query: 93  -----TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                TL +    I  + E   + +L A   + G GLNL  G  + +     ++     Q
Sbjct: 411 LDGTMTLKQRNAAIDAFREDDNVTILLATLGAGGVGLNLTAGSRVYIM-EPQYNPAAIAQ 469

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R+      + G  R V     I +++I+E + +  R K  + D+ LN
Sbjct: 470 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELARKKQQMADMSLN 514


>gi|326671885|ref|XP_003199545.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Danio rerio]
          Length = 1985

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            + +       K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1022 DGNLLVKSSGKLTLLQKMLIKLKDGGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGI 1081

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1082 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1137

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1138 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1175


>gi|126342880|ref|XP_001372665.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1189

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 25/194 (12%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-KIKALEVIIEKA--NA 68
            C L G    + +   ++    QL +  +  D+  H   + +  K+  L  ++++     
Sbjct: 422 VCSLLGLKGSSLSGGDES----QLVHSDIQMDQIPHDSLMQESGKVIFLMALLKRLQDEG 477

Query: 69  APIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGK-IPLLFAHP 116
              +V       L  ++                   L +    I  + + + + +     
Sbjct: 478 HQTLVFSQSRKLLDIIEHLLKAEHFKTLRIDGTVTHLSERQRRIDLFQQSRGVSVFLLTS 537

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GL L      +V F   W+     Q ++R+      + G K  V VY LI   T+
Sbjct: 538 QVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YRIGQKENVVVYRLITCGTV 591

Query: 177 DELVLQRLRTKSTI 190
           +E + +R   K ++
Sbjct: 592 EEKIYRRQVFKDSL 605


>gi|182434811|ref|YP_001822530.1| hypothetical protein SGR_1018 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463327|dbj|BAG17847.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 743

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 76/191 (39%), Gaps = 24/191 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPI 71
           +L  E+ EA+  A  + +  ++   A Y   E         K+  L  ++++A+     +
Sbjct: 525 ELGAEDREAYREAVASGRFQRMRRAA-YAVPE------ASAKLGRLRELVDEASESGLKV 577

Query: 72  IVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHG 122
           +V  +F   LA + +A                +    +  ++      +L +   + G G
Sbjct: 578 VVFSYFREVLATVGEALGPDAFGPLSGSVAPARRQELVDAFSAVDGHAVLLSQIQAGGTG 637

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ +++
Sbjct: 638 LNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRPVQVHRLLATDSVDQRLVE 691

Query: 183 RLRTKSTIQDL 193
            L  K  + D 
Sbjct: 692 LLARKDRLFDA 702


>gi|83715974|ref|NP_001032909.1| chromodomain-helicase-DNA-binding protein 1-like [Bos taurus]
 gi|122139236|sp|Q3B7N1|CHD1L_BOVIN RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|78174364|gb|AAI07535.1| Chromodomain helicase DNA binding protein 1-like [Bos taurus]
 gi|296489521|gb|DAA31634.1| chromodomain-helicase-DNA-binding protein 1-like [Bos taurus]
          Length = 897

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 297 MKDLDAFENET-----AKKVKLQNVLSQLRKC---VDHPYLFDGVEPEPFEIGDHLIE-A 347

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 348 SGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLA 407

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I        + G G+NL    + ++FF   ++ +   Q   R       + G
Sbjct: 408 IKNFGQQPIFTFLLSTRAGGVGMNLT-AADTVIFFDSDFNPQNDLQAAAR-----AHRIG 461

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + + ++  
Sbjct: 462 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498


>gi|302414008|ref|XP_003004836.1| chromodomain helicase hrp3 [Verticillium albo-atrum VaMs.102]
 gi|261355905|gb|EEY18333.1| chromodomain helicase hrp3 [Verticillium albo-atrum VaMs.102]
          Length = 1326

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QG 91
           G+   +++         K+  L+ ++ K   +   +++       L  L         + 
Sbjct: 659 GSTRREDQVKGLIASSGKMMLLDQLLTKLKKDGHRVLIFSQMVKMLDILGDYLALRGYKF 718

Query: 92  RTLDKD------PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + LD           I  +N              + G G+NL    + +V F   W+ + 
Sbjct: 719 QRLDGTIAAGPRRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA 777

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G K+ V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 778 DLQAMGR-----AHRIGQKKPVSIYRLVSKETVEEEVLERARNKLLLEYLTIQA 826


>gi|68144413|gb|AAY86155.1| chromatin-remodelling complex ATPase ISWI2 [Chlamydomonas
           reinhardtii]
          Length = 1086

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCL----QL---ANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  ++++A N  +   K L    QL    N    +                
Sbjct: 415 EMQKKWYAALLQKDVDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLV 474

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTLDK-DP 98
            +  K+  L+ ++ +       +++       +  L+              G T  +   
Sbjct: 475 ENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTDGEARD 534

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N       +      + G G+NL    +I+V +   W+ +   Q ++R      
Sbjct: 535 NMIDEFNRPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQMDLQAMDR-----A 588

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    +N+I+E V+++   K  +  L++ 
Sbjct: 589 HRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQ 628


>gi|330845768|ref|XP_003294743.1| hypothetical protein DICPUDRAFT_100046 [Dictyostelium purpureum]
 gi|325074740|gb|EGC28734.1| hypothetical protein DICPUDRAFT_100046 [Dictyostelium purpureum]
          Length = 1445

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 49   KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTL 94
            + + D     L    ++      IV   + S L+ ++                F    T 
Sbjct: 1258 QLIQDLHTDMLND--KEKEDEKCIVFSQWTSMLSLIENIFIENGWKKNIHYSRFDGTLTS 1315

Query: 95   DKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +Q +N+   P ++       G GLNL    N +     WW++    Q I R+  
Sbjct: 1316 VQRDRVLQAFNQDDGPRVMLMGLRCGGVGLNLTR-ANRVYLMDPWWNIALQNQAIGRV-- 1372

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V+V   I + +I+  +LQ   +K  + + + +
Sbjct: 1373 ---HRMGQKKEVYVKNYIMEESIEIRILQLQESKEELAEAIFS 1412


>gi|302793538|ref|XP_002978534.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
 gi|300153883|gb|EFJ20520.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
          Length = 1858

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 32/180 (17%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP------------ 89
            E K     +  K+  +  ++    +     +V       L  ++                
Sbjct: 1345 ESKRDVLENSGKMVLIMTLLSLNSSRGEKTLVFSQSLHTLDLIENFLDTIPLGGSQDVWN 1404

Query: 90   QGR---------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +GR         T  +       +N+     I  L     +   G N+  G N ++    
Sbjct: 1405 KGREWLRLDGNTTASRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNMT-GANRVIIVDG 1463

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q      + R  + G  + VFVY L+A  T++E +  R  TK  I   +L+A
Sbjct: 1464 SWNPTHDLQA-----LFRAWRYGQTKPVFVYRLLAYGTMEEKIYNRQLTKEGIAARVLDA 1518


>gi|255550546|ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
 gi|223544553|gb|EEF46070.1| ATP binding protein, putative [Ricinus communis]
          Length = 1109

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPII 72
           L+G +  +   A    K            E +   +    KI  +  +++        ++
Sbjct: 717 LEGMDFISPEDAGLAEKLALHVADVAEKAEFQEKHDNISCKISFIMSLLDNLIPEGHNVL 776

Query: 73  VAYHFNSDLARLQKAF---------PQGRTLDKDP-CTIQEWNEG-KIPLLFAHPASCGH 121
           +       L  +Q +            G T   D    + ++ EG   P+        G 
Sbjct: 777 IFSQSRKMLNLIQDSLASNGYEFLRIDGTTKASDRVKIVNDFQEGVGAPIFLLTSQVGGL 836

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GL L    + ++     W+     Q ++R       + G ++ V VY L+   T++E + 
Sbjct: 837 GLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQRKDVLVYRLMTCGTVEEKIY 890

Query: 182 QRLRTKSTI 190
           ++   K  +
Sbjct: 891 RKQIFKGGL 899


>gi|224001476|ref|XP_002290410.1| atpase-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220973832|gb|EED92162.1| atpase-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 873

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--KIPLLFAH 115
            + +++       L  ++                   +K    ++E+N            
Sbjct: 325 GSRVLIFSQMTRVLDIMEDYLRLVGHEYCRIDGNTDGEKRDSQMEEFNAPGSSKFCFLLS 384

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    +I++ F   W+ +   Q ++R       + G  + V V+  I++ T
Sbjct: 385 TRAGGLGINL-ATADIVILFDSDWNPQVDLQAMDR-----AHRIGQTKPVQVFRFISEGT 438

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E +++R   K  +   ++ 
Sbjct: 439 VEEKIIERADKKLFLDAAVIQ 459


>gi|150865976|ref|XP_001385416.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
 gi|149387232|gb|ABN67387.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
          Length = 701

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 523 GGEWR--SSTKIEALVEELYKLRSDKHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQG 580

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D       +  ++ +      + G  LNL    + +     WW+     Q ++
Sbjct: 581 SMSPQQRDNTIKYFMDNTEVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 639

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 640 RV-----HRIGQKRPIRITRFCIEDSIEMKIIELQEKKANMIHATIN 681


>gi|73986610|ref|XP_867743.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 9
            [Canis familiaris]
          Length = 1601

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 25/187 (13%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIE--KANAAPIIVAYHFNSDLA 82
             ++  ++ N   Y D     K++       K + L+ I+   +A    +++     S + 
Sbjct: 1039 IMQLRKICNHP-YMDVGGMEKQLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMT 1097

Query: 83   RLQKAF---------PQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGN 130
             ++  F           G T  +D   + + +NE   +  +      + G GLNLQ   +
Sbjct: 1098 IMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SAD 1156

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ F   W+  +  Q        R  + G +  V V  L   N+++E +L   + K  +
Sbjct: 1157 TVIIFDSDWNPHQDLQA-----QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNV 1211

Query: 191  QDLLLNA 197
               ++ A
Sbjct: 1212 DQKVIQA 1218


>gi|118343651|ref|NP_001071646.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975391|gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975393|gb|AAO61782.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1786

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 786 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 845

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 846 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKAS 899

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 900 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 932


>gi|320032369|gb|EFW14322.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1132

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTL 94
            K+ + ++  K++ L  ++++   N   I++   F   +  L++             G T 
Sbjct: 921  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVVDILEQVLETLEIRFFRLDGTTS 980

Query: 95   DKDPCTIQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D  +I +  + +  +P+      + G G+NL    N ++ F   ++ ++  Q      
Sbjct: 981  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQDDIQA----- 1034

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1035 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLVLDQRV 1076


>gi|257484419|ref|ZP_05638460.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 600

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 483 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 542

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++   Q         G T D+    I ++  GK+P+      + G GLNL    + ++ +
Sbjct: 543 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT-AADTVIHY 600


>gi|170077237|ref|YP_001733875.1| SNF2 helicase, putative [Synechococcus sp. PCC 7002]
 gi|169884906|gb|ACA98619.1| SNF2 helicase, putative [Synechococcus sp. PCC 7002]
          Length = 1002

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 87  AFPQGRTLDKDPCTI--QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            F  G T  +    +  +  N+    P+      + G GLNL    N +     WW+   
Sbjct: 868 LFLYGATRRETRQQMCDRFQNDPNGPPIFILSLKAGGTGLNLTR-ANHVFHVDRWWNPAV 926

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q  +R       + G K+ V V+  ++  T++E +   + +K  + +  ++
Sbjct: 927 EDQATDR-----AFRIGQKQNVQVHKFVSTGTLEEKISAMIASKKELAEQTVD 974


>gi|197251949|ref|NP_075222.2| chromodomain-helicase-DNA-binding protein 8 [Rattus norvegicus]
 gi|226706290|sp|Q9JIX5|CHD8_RAT RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Axis duplication inhibitor; Short=Duplin
 gi|149033674|gb|EDL88472.1| chromodomain helicase DNA binding protein 8, isoform CRA_a [Rattus
            norvegicus]
          Length = 2581

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 1146 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1205

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1206 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLIT 1259

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  +   K  +   +L ++
Sbjct: 1260 RNSYEREMFDKASLKLGLDKAVLQSM 1285


>gi|330793226|ref|XP_003284686.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
 gi|325085384|gb|EGC38792.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
          Length = 2666

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 20/168 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQG 91
            DE          K+  ++ ++++  A    +++       L  L+              G
Sbjct: 972  DELGELLVRSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDG 1031

Query: 92   RTLDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +     I  + + +    +      + G G+NL    + ++ F   W+ +   Q  
Sbjct: 1032 SIKSEVRQASIDRFQDKEANRFVFLLSTRAGGVGINLTT-ADTVILFDSDWNPQSDLQAQ 1090

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R       + G    V VY LI +NT +E + +    K  +  ++L+
Sbjct: 1091 ARC-----HRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLS 1133


>gi|321468014|gb|EFX79001.1| hypothetical protein DAPPUDRAFT_319936 [Daphnia pulex]
          Length = 547

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 31/185 (16%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF-----PQGRTL 94
             +E+  K  H  KI  L  I+         ++V     + L  +++          +T 
Sbjct: 274 VSDEEINKIDHGGKILLLMDILRHCEKIGEKLLVFSQSLAALDLIEEFLANNASEVSKTW 333

Query: 95  DKDPCTIQ---------------EWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFS 136
           + +    +                +N+ K P          + G G+NL  G N ++ F 
Sbjct: 334 NLNKDYFRMDGSTKPEKRLEWGTAFNDPKNPRARFFLTSTKAGGIGINL-KGANRVIIFD 392

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + W+    +Q +      R  + G  +  +VY  +AQ T++E++  R   K  +   +++
Sbjct: 393 VSWNPSVDEQSV-----FRAYRLGQHKPCYVYRFVAQGTMEEIMYYRQVEKLALSRRIVD 447

Query: 197 ALKKE 201
             + E
Sbjct: 448 GEQTE 452


>gi|195128581|ref|XP_002008741.1| GI13663 [Drosophila mojavensis]
 gi|193920350|gb|EDW19217.1| GI13663 [Drosophila mojavensis]
          Length = 1992

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPCTIQ 102
            K+  L  ++++  A    +++       L  L+        +   +D           I 
Sbjct: 1044 KLVLLSKMLKQLKAQGHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTVRQEAID 1103

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1104 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1157

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1158 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1187


>gi|38233941|ref|NP_939708.1| hypothetical protein DIP1355 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200202|emb|CAE49883.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 884

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 16/149 (10%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQE 103
            K++ L  I+++A      +I+  +F S L R++K   +             +    I E
Sbjct: 704 AKMERLIDIVKEAESAGKNVIIFSYFRSVLERIEKDLGEYVAGSITADVPPQRRQQLIDE 763

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L     + G GLN+Q   ++++F           Q I R       + G + 
Sbjct: 764 LGNTGRHVLLLQIVAGGVGLNIQK-ASVVIFTEAQVKPTLVDQAIAR-----AHRMGQRD 817

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V VY L   +T+DE +   L  K  + D
Sbjct: 818 PVTVYRLFGADTVDERLTALLEHKRAVFD 846


>gi|320164497|gb|EFW41396.1| stretch responsive protein 278 [Capsaspora owczarzaki ATCC 30864]
          Length = 958

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPC 99
               K+K L  +++  +AN   +++       L  ++K               +  +   
Sbjct: 715 DTSGKLKILLTLLQYYEANGDKVLIFCSSTRMLRIIEKIVMPRYNYLLLDGATSAMQRQV 774

Query: 100 TIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++ + K   L      + G GLNL    N+++ F   W+     Q        R  +
Sbjct: 775 LVDKFQQDKSKFLFLISTRAGGVGLNLT-AANVVIVFDPSWNPASDMQA-----QDRAFR 828

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R V V  L++Q +I+E +  R   K  + ++ L 
Sbjct: 829 IGQLRDVAVNRLMSQASIEEQIYGRQVYKQHLGNMALE 866


>gi|320032522|gb|EFW14475.1| DNA repair protein RAD16 [Coccidioides posadasii str. Silveira]
          Length = 945

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL +A      LD     +Q
Sbjct: 769 TSSTKIEMLVYDLYKLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQ 828

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N  ++ +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 829 RQKSIDYFMNNVEVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 883

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 884 -HRIGQRRPCVITKLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 930


>gi|154310570|ref|XP_001554616.1| hypothetical protein BC1G_06759 [Botryotinia fuckeliana B05.10]
 gi|150851299|gb|EDN26492.1| hypothetical protein BC1G_06759 [Botryotinia fuckeliana B05.10]
          Length = 1142

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
              +  L+ I +++ +   +V   F S L+ ++ A  +                    +  
Sbjct: 976  ALLSNLKSIRKESPSMKSVVFSQFTSFLSLIEPALARSSIPFLRLDGSMPQKARAAVLAR 1035

Query: 104  W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + + G+  +L     + G GLNL      +     WW      Q I+R+      + G  
Sbjct: 1036 YKDSGEGIVLLLSLRAGGVGLNLTM-AKRVFMMDPWWSFAVEAQAIDRV-----HRMGQV 1089

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              V V   I + +++E +L+    K  I   L
Sbjct: 1090 GEVVVKRFIVKGSVEERMLRVQERKKFIASSL 1121


>gi|156096356|ref|XP_001614212.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803086|gb|EDL44485.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1529

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 41/180 (22%)

Query: 51   VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
            V+  K+K L   I  +  N   I+V   +   L  +QK             G    ++  
Sbjct: 1322 VYSTKLKQLFDHIQNDMQNELHIVVFSQWIGFLKIIQKLLTLHNIPNKIYDGSLTYEERK 1381

Query: 100  TIQEW---NEGKI---------------------PLLFAHPASCGHGLNLQYGGNILVFF 135
            T   W     GK+                      +L     + G GLNL    + +   
Sbjct: 1382 TTLFWFNVQRGKVYQPGIGFTTPSSPIAVENFAGKVLLCSLKAGGVGLNLTVS-SKVYLM 1440

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LWW+     Q  ER+      + G  + V +Y  + + T++E +LQ  ++K    + +L
Sbjct: 1441 DLWWNPAIEDQAFERV-----HRIGQLKDVSIYKFVLEKTVEERILQIHQSKQYTANQIL 1495


>gi|121711213|ref|XP_001273222.1| DNA excision repair protein Rad16, putative [Aspergillus clavatus
           NRRL 1]
 gi|119401373|gb|EAW11796.1| DNA excision repair protein Rad16, putative [Aspergillus clavatus
           NRRL 1]
          Length = 842

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL++A      LD      Q
Sbjct: 666 TSSTKIEMLVYELYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 725

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 726 RQRSIDHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 780

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  LN  + E +
Sbjct: 781 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTLNKDQGEAL 827


>gi|119176940|ref|XP_001240322.1| hypothetical protein CIMG_07485 [Coccidioides immitis RS]
 gi|303316255|ref|XP_003068132.1| DNA repair protein RAD16, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107808|gb|EER25987.1| DNA repair protein RAD16, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 927

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL +A      LD     +Q
Sbjct: 751 TSSTKIEMLVYDLYKLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQ 810

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N  ++ +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 811 RQKSIDYFMNNVEVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 865

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 866 -HRIGQRRPCVITKLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 912


>gi|34328020|dbj|BAB13390.3| KIAA1564 protein [Homo sapiens]
          Length = 2432

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 966  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1025

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1026 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1084

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1085 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1136


>gi|299115203|emb|CBN74034.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1524

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP------------- 89
            K     H  K+  L+ ++ +       +++   F   L  L+                 
Sbjct: 730 SKEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKIMLDILEDYLIASDISYGRIDGDI 789

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           QGR   K+   I  +        ++     + G G+ L    +  + +   W+ +   Q 
Sbjct: 790 QGRQRQKE---IDSFQAPDSDMLVMLLSTRAGGVGITLT-AADTCIIYDSDWNPQNDVQA 845

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R       + G  ++V VY L+   T +  + +    K  + + +L+  + +
Sbjct: 846 QARC-----HRIGQTKSVKVYRLLVAKTYETHMFKTASRKLGLDEAVLSGTRPQ 894


>gi|56203112|emb|CAI19451.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56417881|emb|CAI19894.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
          Length = 1195

 Score = 87.7 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 531 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 590

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 591 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 646

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 647 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 684


>gi|281340559|gb|EFB16143.1| hypothetical protein PANDA_017702 [Ailuropoda melanoleuca]
          Length = 2448

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 980  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1039

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1040 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1098

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1099 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1150


>gi|255077387|ref|XP_002502335.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517600|gb|ACO63593.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 712

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN-EGKIPLLF 113
           +      ++       L  ++    Q               +    + E+N   +  +  
Sbjct: 479 RDKGHKTLIFSQMTKMLDLIESYLEQKGQKVCRIDGSVQWQERKKQMDEFNTNPEYGVFL 538

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ +   W+  +  Q ++R       + G  + V V  L   
Sbjct: 539 LSTRAGGLGINLT-AADTVIIYDSDWNPHQDMQAMDRC-----HRIGQTKPVHVLRLATA 592

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  +L R  +K  ++ L++
Sbjct: 593 HSVEGKMLSRANSKLALEKLVI 614


>gi|326477312|gb|EGE01322.1| DNA repair protein RAD16 [Trichophyton equinum CBS 127.97]
          Length = 947

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  N       IV   F S L     RL +A      LD     +Q
Sbjct: 771 TSSTKIEMLVFDLCQLRNKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 830

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 831 RQRSIDYFMQNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 885

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 886 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 932


>gi|326472991|gb|EGD97000.1| DNA repair protein RAD16 [Trichophyton tonsurans CBS 112818]
          Length = 947

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  N       IV   F S L     RL +A      LD     +Q
Sbjct: 771 TSSTKIEMLVFDLCQLRNKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 830

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 831 RQRSIDYFMQNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 885

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 886 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 932


>gi|302830624|ref|XP_002946878.1| hypothetical protein VOLCADRAFT_120343 [Volvox carteri f.
            nagariensis]
 gi|300267922|gb|EFJ52104.1| hypothetical protein VOLCADRAFT_120343 [Volvox carteri f.
            nagariensis]
          Length = 2539

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            F     RL  + P           ++ +N  + P         + G G+NL    + ++ 
Sbjct: 904  FTH--QRLDGSTPAA----ARHAAMEHFNRPESPDFAFLLSTRAGGLGINL-ATADTVII 956

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            F   W+ +   Q + R       + G    V +Y  +   +++E +L+R + K  +
Sbjct: 957  FDSDWNPQNDLQAMSR-----AHRIGQTETVNIYRFVTSGSVEEDILERAKRKMVL 1007


>gi|297479287|ref|XP_002690695.1| PREDICTED: chromodomain helicase DNA binding protein 8 [Bos taurus]
 gi|296483394|gb|DAA25509.1| chromodomain helicase DNA binding protein 8 [Bos taurus]
          Length = 2540

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 1072 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 1131

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 1132 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 1190

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 1191 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1242


>gi|289613152|emb|CBI59746.1| unnamed protein product [Sordaria macrospora]
          Length = 1171

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
              ++V  H    L  LQ  F              + ++    + E+N + +  +     
Sbjct: 606 GDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGALSYEERQRVVDEFNTDPRQFVFLIST 665

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N +V F   W+     Q        R  + G  R V V+ L++  TI
Sbjct: 666 KAGGVGLNIT-SANKVVIFDPHWNPSYDLQA-----QDRAYRIGQIRDVDVFRLVSAGTI 719

Query: 177 DELVLQRLRTKSTIQD 192
           +E+V  R   K    +
Sbjct: 720 EEIVYARQIYKQQQAN 735


>gi|225557865|gb|EEH06150.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           G186AR]
          Length = 928

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFP--------- 89
            +E     E    KI+AL  I++    AP    +V   + S L  ++             
Sbjct: 744 TNEIDIDSETTSSKIQALLKILKAKGQAPNTKTVVFSQWVSFLDIVESQLVRNGITFARI 803

Query: 90  --QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +  +  +D       N+    +L A    C  GLNL    N ++    WW      Q 
Sbjct: 804 DGKMSSAKRDAAMNALSNDSNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQA 862

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++R+      + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 863 VDRV-----YRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTL 900


>gi|194036340|ref|XP_001928553.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus
           scrofa]
          Length = 901

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 81/219 (36%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E+      + ++  N  S+  KC    +    +D           H  E  
Sbjct: 297 MKDLDAFENEM-----AKKVKLQNVLSQLRKC---VDHPYLFDGVEPEPFEIGDHLIE-A 347

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 348 SGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 407

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 408 IKNFGQQPIFIFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 461

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             ++V V  LI ++T++E++ ++  +K  + + ++   +
Sbjct: 462 QNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEGGR 500


>gi|317034188|ref|XP_001396165.2| DNA repair protein RAD16 [Aspergillus niger CBS 513.88]
          Length = 652

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 72  IVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEWN-------EGKIPLLFAHPASCG 120
           IV   F S L     RL++A      LD      Q  N          + +      + G
Sbjct: 501 IVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQNSIEYFMNNVDVEVFLVSLKAGG 560

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             LNL     + +    WW+     Q  +R       + G +R   +  L  +++++  +
Sbjct: 561 VALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVESRI 614

Query: 181 LQRLRTKSTIQDLLLNALKKETI 203
           +     K+ + +  +N  + E +
Sbjct: 615 VLLQEKKANLINGTINKDQGEAL 637


>gi|158300708|ref|XP_552266.3| AGAP011966-PA [Anopheles gambiae str. PEST]
 gi|157013291|gb|EAL38818.3| AGAP011966-PA [Anopheles gambiae str. PEST]
          Length = 1082

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 49   KEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK 96
             E    KI+    ++E+         I+   + S L  L     +         G+   K
Sbjct: 906  IERPSSKIEKTMQLLEEKIFHTDDKAIIVSQWTSMLDILATHLSERNVPFVSLTGKVQVK 965

Query: 97   DPCTIQ-EWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  ++N   GK  ++     + G GLNL  G N L+     W+ +   Q  +R+  
Sbjct: 966  FRNDIVLDFNKPSGKSKVMLLSLTAGGVGLNL-VGANHLLLLDPHWNPQLEAQAQDRV-- 1022

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V+++  +   T+++ +      K  I D +L  
Sbjct: 1023 ---YRVGQTKPVYIWKFMCAETVEQKIHALQEHKLGIADGVLTG 1063


>gi|307191137|gb|EFN74835.1| DNA excision repair protein ERCC-6 [Camponotus floridanus]
          Length = 983

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 69  APIIVA---YHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPA 117
             +++          L  L +              + +   TI  +N      +      
Sbjct: 552 HRVLLFTQGRQMMHILESLLQREGYTYLRMDGTTAMSQRQQTIHTFNNRPSYFVFLLTTR 611

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G+NL  G + ++ +   W+     Q  ER       + G  + V VY LI   TI+
Sbjct: 612 VGGLGVNL-IGADRVIIYDPDWNPATDAQARERAW-----RIGQNKQVTVYRLITAGTIE 665

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +  R   K  + + +L+  ++  +
Sbjct: 666 EKMYHRQIFKLLLSNKVLDDPRQRRL 691


>gi|297663856|ref|XP_002810379.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           1 [Pongo abelii]
          Length = 903

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E+      + ++  N  S+  KC    +    +D           H  E  
Sbjct: 300 MKDLDAFENEM-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 350

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 351 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 410

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 411 IKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 464

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 465 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 501


>gi|195161920|ref|XP_002021804.1| GL26702 [Drosophila persimilis]
 gi|194103604|gb|EDW25647.1| GL26702 [Drosophila persimilis]
          Length = 1943

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
            +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 855  LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 914

Query: 93   TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 915  LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 973

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 974  QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1021


>gi|50554893|ref|XP_504855.1| YALI0F01232p [Yarrowia lipolytica]
 gi|49650725|emb|CAG77657.1| YALI0F01232p [Yarrowia lipolytica]
          Length = 844

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE-KANA 68
           L  DL    IE   ++ +    +Q  N          W+     KI+AL E + + +++ 
Sbjct: 638 LTIDLNAPAIEQETNSKEKTSIVQRIN------MTGGWR--SSTKIEALVEELYKLRSDR 689

Query: 69  API--IVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEWN-------EGKIPLLFAH 115
             I  IV   F S L     RL++A  Q   L  +    Q  N         ++ +    
Sbjct: 690 QTIKSIVFSQFTSMLDLVEWRLRRAGFQTVKLQGNMSPTQRQNSIKYFMENPQVEVFLVS 749

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G  LNL     + +    WW+     Q  +R+      + G  R V +     +++
Sbjct: 750 LKAGGVALNLCEASQVFIL-DPWWNPSVEWQSGDRV-----HRIGQHRPVKITRFAIEDS 803

Query: 176 IDELVLQRLRTKSTI 190
           I+  +++    K+++
Sbjct: 804 IESRIIELQEKKASM 818


>gi|316975021|gb|EFV58483.1| putative immunoglobulin domain protein [Trichinella spiralis]
          Length = 858

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T ++      +    +  +      +   G+NL  G N +V F   W+     Q + R
Sbjct: 515 ASTRERLAKKFNDETNRRCRVFLLSTKAGSLGINL-IGANRVVVFDANWNPSHDLQAMFR 573

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G  + V++Y LIA+ T++E + QR   K ++   +++
Sbjct: 574 V-----YRLGQCKPVYIYRLIAKGTMEETIYQRQVVKQSLSCRVID 614


>gi|309362352|emb|CAP28139.2| hypothetical protein CBG_08287 [Caenorhabditis briggsae AF16]
          Length = 1512

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVH----- 52
             Y   ++ L  D +  +  A + ++  V   +L N    +         HWK        
Sbjct: 784  IYRHMKKGLLLDAKASS-GARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVNGKE 842

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK 96
                  K++ L+ I+ K  A+   +++ +           F                 D+
Sbjct: 843  LMRVAGKLELLDRILPKLKASGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 902

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N       L      + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 903  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 957  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1001


>gi|119188869|ref|XP_001245041.1| hypothetical protein CIMG_04482 [Coccidioides immitis RS]
          Length = 1011

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     + ++N + +  +   
Sbjct: 612 ANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFNADPRQFVFLI 671

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G +R V V+ L++  
Sbjct: 672 STKAGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQRRDVEVFRLVSAG 725

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 726 TIEEIVYARQIYKQQQAN 743


>gi|221114007|ref|XP_002155441.1| PREDICTED: similar to DNA excision repair protein ERCC-6 [Hydra
           magnipapillata]
          Length = 1079

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K+  +E ++   K     +++       L  L+                  +      
Sbjct: 597 SGKMIVVENLLRMWKHQGHRVLLFTQSKQMLDILEGFLKAAEHSYMRMDGTTSVKSRHGI 656

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++++E K I +        G GLNL    N ++ +   W+     Q  ER       + 
Sbjct: 657 VKKFHESKNIFVFLLTTRVGGLGLNL-IAANRVIIYDPDWNPSVDSQARERSW-----RI 710

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  + V +Y L+   TI+E +  R   K  + + +L
Sbjct: 711 GQLKDVTIYRLLTTGTIEEKIYHRQIFKQFLTNRVL 746


>gi|119392064|ref|NP_963999.2| chromodomain-helicase-DNA-binding protein 8 [Mus musculus]
 gi|123778258|sp|Q09XV5|CHD8_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Axis duplication inhibitor; Short=Duplin
 gi|77744590|gb|ABB02259.1| chromodomain helicase DNA binding protein 8 [Mus musculus]
          Length = 2582

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 1148 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1207

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1208 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLIT 1261

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  +   K  +   +L ++
Sbjct: 1262 RNSYEREMFDKASLKLGLDKAVLQSM 1287


>gi|149244294|ref|XP_001526690.1| DNA repair protein RAD16 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449084|gb|EDK43340.1| DNA repair protein RAD16 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 902

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 30/202 (14%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEK 65
           +L       + E F  AS   +  Q ++G         W+     KI+AL      +   
Sbjct: 696 DLEQPAIEVDEELFTKASIVNRIKQGSHG-------GEWR--SSTKIEALVEELYKLRSD 746

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLFA 114
            +    IV   F S L  ++    +                +D       +  ++ +   
Sbjct: 747 RHTIKSIVFSQFTSMLDLIEWRLKRAGFQTAKLSGSMSPQQRDNTIKYFMDNTEVEVFLV 806

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G  LNL    + +     WW+     Q ++R+      + G KR + +     ++
Sbjct: 807 SLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITRFCIED 860

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           +I+  +++    K+ + +  +N
Sbjct: 861 SIELKIIELQDKKANMINATIN 882


>gi|148710305|gb|EDL42251.1| mCG18716, isoform CRA_b [Mus musculus]
          Length = 2582

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 1148 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1207

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1208 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLIT 1261

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  +   K  +   +L ++
Sbjct: 1262 RNSYEREMFDKASLKLGLDKAVLQSM 1287


>gi|30089126|emb|CAD35753.1| X-linked nuclear protein [Dugesia japonica]
          Length = 1076

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNS-DLARLQKAFPQGRTLDK 96
           Y  E     E   E +K L   I+++       II        D  R+  +  Q      
Sbjct: 735 YLQELHTIAEKIQEDLKKLNDSIDQSPTTAEEDIIYNSWIKGLDYDRMDGST-QAFVRAD 793

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  + + ++ L      + G G+NL    N ++ F + W+     Q I      R 
Sbjct: 794 IQSRFNSFEDHRLRLFLISTRAGGMGVNL-VAANRVIIFDVSWNPSHDVQAI-----FRS 847

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  + V+VY  ++Q T++E + +R  TK ++   +++
Sbjct: 848 YRFGQNKPVYVYRFVSQGTMEEKIYERQVTKQSLSLRVVD 887


>gi|213402009|ref|XP_002171777.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
 gi|211999824|gb|EEB05484.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
          Length = 895

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLA----RLQKA------FPQGRTLDKD 97
              KI+AL   +            IV   F + L     RL+KA         G T    
Sbjct: 722 SSTKIEALVEELYMLRRKDRTTKSIVFSQFAAMLDLVSWRLRKAGFNCVRLEGGMTPKAR 781

Query: 98  PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI+ +     I +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 782 DATIKAFCSDVNITVFLVSLKAGGIALNLTE-ASQVFMLDPWWNASTQLQAMDRI----- 835

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R + +  L  +N+I+  ++Q    K  +    L+
Sbjct: 836 HRIGQCRPIRITTLCIENSIESKIIQLQEKKEKLVKATLD 875


>gi|268553029|ref|XP_002634497.1| Hypothetical protein CBG08287 [Caenorhabditis briggsae]
          Length = 1480

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVH----- 52
             Y   ++ L  D +  +  A + ++  V   +L N    +         HWK        
Sbjct: 784  IYRHMKKGLLLDAKASS-GARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVNGKE 842

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK 96
                  K++ L+ I+ K  A+   +++ +           F                 D+
Sbjct: 843  LMRVAGKLELLDRILPKLKASGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 902

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N       L      + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 903  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 957  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1001


>gi|307107878|gb|EFN56119.1| hypothetical protein CHLNCDRAFT_144734 [Chlorella variabilis]
          Length = 1822

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT-IQEWNE--GKIPLLFAH 115
              +++   F   L  L+              G     +    I  +N    +  L    
Sbjct: 635 GHRVLIYSQFLLMLDVLEWYCAARGHSYLRLDGSVGTAERQRRIDAFNGQPSRYFLFLLS 694

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V +   W+     Q   R       + G    V VY L+A+ T
Sbjct: 695 TRAGGLGINL-ATADTVVLYDSDWNPHNDLQAQAR-----AHRLGQSSGVMVYRLVARAT 748

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           ++E ++QR + K  ++ +++  +K++  
Sbjct: 749 VEERMMQRAKGKLVLEHVVVRKMKRQPR 776


>gi|170036699|ref|XP_001846200.1| chromodomain helicase-DNA-binding protein 3 [Culex quinquefasciatus]
 gi|167879513|gb|EDS42896.1| chromodomain helicase-DNA-binding protein 3 [Culex quinquefasciatus]
          Length = 1982

 Score = 87.7 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  LE ++++       +++       L  ++          +    G T       I 
Sbjct: 1074 KLVLLEKMLKQLKETGHRVLIFSQMTKMLDIMEDFLEGIGYKYERIDGGITGTLRQEAID 1133

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1134 RFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1188 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1217


>gi|189237363|ref|XP_970443.2| PREDICTED: similar to kismet CG3696-PA [Tribolium castaneum]
          Length = 4044

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIP--LL 112
            KAN   +++       L  L+              GR   +     I  ++       + 
Sbjct: 1888 KANGHRVLIFSQMVRCLDILEDYLMFRKYPFERIDGRIRGNLRQAAIDRFSRPDSDRFVF 1947

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 1948 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 2001

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2002 RNTYEREMFDKASLKLGLDKAILQSM 2027


>gi|156058402|ref|XP_001595124.1| hypothetical protein SS1G_03212 [Sclerotinia sclerotiorum 1980]
 gi|154701000|gb|EDO00739.1| hypothetical protein SS1G_03212 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1142

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI--QEWNEG 107
            L+ + +++ +   +V   F S L+ ++ A            G    K    +  Q  N  
Sbjct: 981  LKTLRKESPSTKSVVFSQFTSFLSLIEPALTRSSIPFLRLDGSMAQKARAAVLTQFKNSE 1040

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            K  +L     + G GLNL      +     WW      Q I+R+      + G    V V
Sbjct: 1041 KGVVLLLSLRAGGVGLNLTM-AKRVFMMDPWWSFAVEAQAIDRV-----HRMGQVDEVLV 1094

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLL 194
               I + +++E +L+    K  I   L
Sbjct: 1095 KRFIVKGSVEERMLRVQERKKFIASSL 1121


>gi|300121547|emb|CBK22066.2| unnamed protein product [Blastocystis hominis]
          Length = 787

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 20/167 (11%)

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTL 94
            +      K+  L+ ++   +A    +++     + L  +Q          +    G  +
Sbjct: 476 KYITYASGKMVVLDKLLPKLRAQGHRVLLFSQMVNMLNIIQDYLSMKGYPFERIDGGVKI 535

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  ++       +      + G G+NL    + ++ +   W+ +   Q   R  
Sbjct: 536 SDRQAAIDRFSTPGSDRFIFLICTRAGGVGINLT-AADTVIIYDSDWNPQNDIQAQARC- 593

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G  +AV VY LI   T +  + Q+   K  +   +LN LK
Sbjct: 594 ----HRIGQDKAVKVYRLITNRTYEMEMFQKANMKLGLDKAVLNPLK 636


>gi|320035113|gb|EFW17055.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
          Length = 1011

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     + ++N + +  +   
Sbjct: 612 ANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFNADPRQFVFLI 671

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G +R V V+ L++  
Sbjct: 672 STKAGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQRRDVEVFRLVSAG 725

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 726 TIEEIVYARQIYKQQQAN 743


>gi|307180140|gb|EFN68184.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Camponotus floridanus]
          Length = 1960

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQ 102
            K+  L  +++K   +   +++       L  L+        +   +D      +    I 
Sbjct: 1041 KLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGSQRQEAID 1100

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1101 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1154

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1155 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1184


>gi|73999128|ref|XP_857674.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
           isoform 3 [Canis familiaris]
          Length = 2191

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 2   KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------ 51
           K Y    ++   +    G      N  +  ++  +  N    +   EEK  +E       
Sbjct: 411 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 470

Query: 52  --HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
              D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 471 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 530

Query: 93  TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 531 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 589

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 590 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 637


>gi|224098212|ref|XP_002194690.1| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency, complementation group 6-like
           [Taeniopygia guttata]
          Length = 1170

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK 108
           LE + E+ +   +        D+  L  +  Q + L          +++           
Sbjct: 478 LERLREEGHRTLVFSQSRKMLDIIELVLSRRQFQILRIDGTVTHLTERERRINAFQTNTT 537

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +        G G+ L    + +V F   W+     Q ++R       + G K  V +Y
Sbjct: 538 YSVFLLTTQVGGVGITLT-AASRVVIFDPSWNPATDAQAVDR-----AYRIGQKENVVIY 591

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
            LI   T++E + +R   K ++
Sbjct: 592 RLITCGTVEEKIYRRQVFKDSL 613


>gi|195435393|ref|XP_002065676.1| GK15574 [Drosophila willistoni]
 gi|194161761|gb|EDW76662.1| GK15574 [Drosophila willistoni]
          Length = 1941

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----RLQKAFPQGRT 93
            +  DE          K+  L+ ++ +       +++       L      LQK     + 
Sbjct: 844  LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQR 903

Query: 94   LDK------DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            LD           +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 904  LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 962

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 963  QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1010


>gi|47217489|emb|CAG10869.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 861

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFP 89
           C Q ++ + Y  +      +   K   L+ ++         +++   F   L  ++    
Sbjct: 669 CQQYSSISSYQLDTD--LLLDSGKFILLKELLTSLKKKGDRVVLFSQFTMMLDIIEVLLK 726

Query: 90  ---------QGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                     G T   D    I E+N +  I +      + G G+NL    N+++   + 
Sbjct: 727 HLSHRYIRLDGSTPIADRIVLIDEYNTDSDIFVFLLSTRAGGLGINLT-SANVVILHDID 785

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    +Q  +R       + G  R V V  LI++ TIDE +LQ  + K  ++  +  A
Sbjct: 786 CNPYNDKQAEDRC-----HRVGQTRTVRVIKLISKGTIDECILQLGQKKLKLEHDMTAA 839


>gi|256052547|ref|XP_002569826.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|227284553|emb|CAY17238.1| chromodomain helicase DNA binding protein, putative [Schistosoma
            mansoni]
          Length = 1966

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 20/152 (13%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
              K++ +  ++ K       +++       L  L+          +      T       
Sbjct: 1117 SGKLELMSKMLRKLYETKHRVLIFSQMTKMLDLLEDFLDSEGYKFERIDGAVTGQLRQDA 1176

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  +N              + G G+NL    + ++ +   W+     Q       +R  +
Sbjct: 1177 IDRFNAPDSLSFAFLLSTRAGGLGINL-ASADTVIIYDSDWNPHNDIQA-----FSRAHR 1230

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             G    V +Y  + + T++E V Q  + K  +
Sbjct: 1231 IGQSNKVMIYRFVTRGTVEERVTQVAKKKMML 1262


>gi|151946506|gb|EDN64728.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 790

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 610 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 667

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 668 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 726

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 727 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 770


>gi|157134598|ref|XP_001663322.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108870420|gb|EAT34645.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 340

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
           K+  LE ++++       +++       L  L+          +    G T       I 
Sbjct: 103 KLVLLEKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGFGYKYERIDGGITGTLRQEAID 162

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N    +         + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 163 RFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 216

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               V +Y  + +N+++E V Q  + K  +
Sbjct: 217 QANKVMIYRFVTRNSVEERVTQVAKRKMML 246


>gi|323349726|gb|EGA83941.1| Rad16p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 790

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 610 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 667

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 668 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 726

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 727 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 770


>gi|312068394|ref|XP_003137194.1| BRM protein [Loa loa]
 gi|307767650|gb|EFO26884.1| BRM protein [Loa loa]
          Length = 619

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------ 94
           D           K + L+ ++ K  A+   I++     S L  + + +   R        
Sbjct: 98  DVTGKDLYRVSGKFELLDRVLPKLKASGHRILMFCQMTS-LMTIMEDYLNYREFKYLRLD 156

Query: 95  -----DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                D+    ++ +N    +  +      + G GLNLQ   + ++ F   W+  +  Q 
Sbjct: 157 GSTKPDERGQLLELYNAPNSEYFIFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA 215

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  R  + G  R V V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 216 -----QDRAHRIGQSREVRVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 262


>gi|198473015|ref|XP_001356144.2| GA17649 [Drosophila pseudoobscura pseudoobscura]
 gi|198139261|gb|EAL33204.2| GA17649 [Drosophila pseudoobscura pseudoobscura]
          Length = 1943

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
            +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 855  LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 914

Query: 93   TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 915  LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 973

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 974  QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1021


>gi|303388021|ref|XP_003072245.1| helicase DNA-binding protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301384|gb|ADM10885.1| helicase DNA-binding protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1225

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
           N   +++       L  L +              G   +     I  +++    + +   
Sbjct: 638 NGHKVLIFSQMTRCLDLLAEYLTYRKYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLL 697

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   W+ +   Q   R       + G    V VY L+ +N
Sbjct: 698 STRAGGVGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTSEVKVYRLVTEN 751

Query: 175 TIDELVLQRLRTKSTIQDLLLNAL 198
           T +  +  +   K  +   +L  +
Sbjct: 752 TYEREMFDKAGLKLGLDRAVLQRM 775


>gi|303323511|ref|XP_003071747.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111449|gb|EER29602.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1011

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     + ++N + +  +   
Sbjct: 612 ANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFNADPRQFVFLI 671

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G +R V V+ L++  
Sbjct: 672 STKAGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQRRDVEVFRLVSAG 725

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 726 TIEEIVYARQIYKQQQAN 743


>gi|148342542|gb|ABQ59048.1| CHD1L protein [Homo sapiens]
          Length = 900

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 298 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 349

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K++ L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 350 GKLQLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 409

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 410 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 463

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 464 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 499


>gi|6319590|ref|NP_009672.1| Rad16p [Saccharomyces cerevisiae S288c]
 gi|400920|sp|P31244|RAD16_YEAST RecName: Full=DNA repair protein RAD16; AltName: Full=ATP-dependent
           helicase RAD16
 gi|3551|emb|CAA46974.1| excision repair protein [Saccharomyces cerevisiae]
 gi|476069|emb|CAA55616.1| UV damage repair protein [Saccharomyces cerevisiae]
 gi|487900|gb|AAA34931.1| RAD16 [Saccharomyces cerevisiae]
 gi|536453|emb|CAA85071.1| RAD16 [Saccharomyces cerevisiae]
 gi|285810448|tpg|DAA07233.1| TPA: Rad16p [Saccharomyces cerevisiae S288c]
          Length = 790

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 610 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 667

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 668 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 726

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 727 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 770


>gi|171681928|ref|XP_001905907.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940923|emb|CAP66573.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1119

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVII-EKANAAPIIVAYHFNSDLARL------QKAFPQGRTLDKDPCTIQE-- 103
              KI+ L  I+ ++A+    IV   F S L  +      Q      R   K P   +E  
Sbjct: 898  SAKIRELLSILRKEAHEHKFIVFSQFTSMLDLIEPFLRSQPGMKAVRYDGKMPNDAREAA 957

Query: 104  ----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +    +L         GLNL      ++    +W+    +Q I+R+      + 
Sbjct: 958  LKALRTDPHTRILLCSLKCGSLGLNLT-AATRVIIVEPFWNPFVEEQAIDRV-----HRL 1011

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 V VY L  Q+T++  +L+    K  + +  +  
Sbjct: 1012 TQTVDVIVYKLTVQDTVEARILELQNKKRMLAEATIEG 1049


>gi|258572294|ref|XP_002544909.1| hypothetical protein UREG_04426 [Uncinocarpus reesii 1704]
 gi|237905179|gb|EEP79580.1| hypothetical protein UREG_04426 [Uncinocarpus reesii 1704]
          Length = 703

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                    K+  L+ ++    +    I++   F + L  LQ                 +
Sbjct: 553 DESIVTSSGKMLLLDRLVPCLLSKGHKILLFSQFKTQLDILQDWAYLRDWNCCRIDGAVS 612

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  I  +N +    +      + G G+NL    + ++ +   W+ ++  Q      
Sbjct: 613 QVDRQAQIYAFNTDSNYKIFLLSTRAGGQGINLT-AADTVILYDSDWNPQQDLQA----- 666

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
             R  + G  + V VY L  + T+++  L  L
Sbjct: 667 QDRAHRIGQTKPVLVYRLATRGTVEQRSLSGL 698


>gi|260834763|ref|XP_002612379.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
 gi|229297756|gb|EEN68388.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
          Length = 1849

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL-DKDPCTIQEWNEGKIP--LL 112
           +A    +++       L  L+    Q         GR   +     I  +++      + 
Sbjct: 481 RAGGHKVLIFSQMVRCLDILEDYLVQNVYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 540

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  ++V VY L+ 
Sbjct: 541 LLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQSKSVKVYRLLT 594

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
           + T +  +  R   K  +   +L +++
Sbjct: 595 RATYERDMFDRASLKLGLDKAVLQSMR 621


>gi|330918828|ref|XP_003298357.1| hypothetical protein PTT_09071 [Pyrenophora teres f. teres 0-1]
 gi|330929981|ref|XP_003302841.1| hypothetical protein PTT_14820 [Pyrenophora teres f. teres 0-1]
 gi|330929988|ref|XP_003302844.1| hypothetical protein PTT_14823 [Pyrenophora teres f. teres 0-1]
 gi|311321519|gb|EFQ89060.1| hypothetical protein PTT_14823 [Pyrenophora teres f. teres 0-1]
 gi|311321523|gb|EFQ89063.1| hypothetical protein PTT_14820 [Pyrenophora teres f. teres 0-1]
 gi|311328454|gb|EFQ93547.1| hypothetical protein PTT_09071 [Pyrenophora teres f. teres 0-1]
          Length = 1129

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 23/158 (14%)

Query: 53   DEKIKALEVII-----EKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ 102
              K +AL   +     E+ NA  + V   F S L  +     +   P  R        ++
Sbjct: 958  SAKTQALLGYLRKTRKEEPNAKTV-VFSQFTSFLDLIEPALTRDHIPFLRFDGSISQKVR 1016

Query: 103  EW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    +  +  +L     + G GLNL    N +     WW      Q I+R+     
Sbjct: 1017 AQILTEFTSSPRPYVLLLSLRAGGVGLNLTC-ANKVFMMDPWWSFAVEAQAIDRV----- 1070

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G +R V V     Q +I+E +L+    K  I   L
Sbjct: 1071 HRMGQEREVKVVRFCVQGSIEEKMLRIQERKKFIASSL 1108


>gi|307105038|gb|EFN53289.1| hypothetical protein CHLNCDRAFT_136932 [Chlorella variabilis]
          Length = 1383

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 30/194 (15%)

Query: 27   SKTVKCLQLAN-------GAVYYDEE----KHWKEVHDEKIKALEVIIEKANAA-PIIVA 74
            +      Q A+       G  YYD      K+     D K++ +  ++    A+  ++V 
Sbjct: 982  ALVGPLRQAASCAYKQPTGEQYYDAATGRYKNVTYTFDSKVEKVLDVLRGKGASEKVVVF 1041

Query: 75   YHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + + L  +++  P+            ++++K    I ++       + F    + G G
Sbjct: 1042 SEYKALLQAVKRRLPELGLDSRDLLTNAKSVEKRGQAIADFQQAPPTQVFFLTHRTGGAG 1101

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + L  G + +V      +    +Q I R       + G +RAV V  LI + TI+E +++
Sbjct: 1102 VTLTAGTH-VVLCEPVLNPAFEEQAIGRCN-----RLGQQRAVTVTRLIMKGTIEEKIVE 1155

Query: 183  RLRTKSTIQDLLLN 196
             ++ +    D  L 
Sbjct: 1156 YMKQRDGSTDDDLE 1169


>gi|328698146|ref|XP_001952559.2| PREDICTED: DNA excision repair protein ERCC-6 [Acyrthosiphon pisum]
          Length = 1136

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +E +++  K     +++       L   QK                ++      
Sbjct: 608 SGKMIVVEALLKMWKKQGHRVLLFTQSVKMLNIFQKFIIEQNYSYLKLEGATSIGSRQPI 667

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++N +  I ++       G G+NL  G + ++ F   W+     Q  ER       + 
Sbjct: 668 INKFNKDPSIFVMILTTKVGGLGVNL-IGADRVIIFDPDWNPATDLQARERAW-----RI 721

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G   +V +Y L+   TI+E +  R   K  + + +L
Sbjct: 722 GQTNSVTIYRLLTAGTIEEKIYHRQIFKQFLSNKVL 757


>gi|302819150|ref|XP_002991246.1| hypothetical protein SELMODRAFT_429595 [Selaginella moellendorffii]
 gi|300140957|gb|EFJ07674.1| hypothetical protein SELMODRAFT_429595 [Selaginella moellendorffii]
          Length = 1551

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKIPLLFAHPA 117
               +V   + S L     RL+KA  + R LD       +D    +   + ++ ++     
Sbjct: 979  EKALVFSQWTSLLDLVEPRLEKAGLEFRRLDGTMSVMERDAAVCEFNEKPEVSVMLMGLK 1038

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                GLN+    ++L+   +WW+     Q I+R       + G  R V V     + TI+
Sbjct: 1039 VGSLGLNMVAACHVLLL-DVWWNPTVEDQAIDR-----AHRIGQTRDVHVTRFTVKKTIE 1092

Query: 178  ELVLQRLRTKSTI 190
            + +L     K  +
Sbjct: 1093 DRILALQEQKKQM 1105


>gi|156036384|ref|XP_001586303.1| hypothetical protein SS1G_12881 [Sclerotinia sclerotiorum 1980]
 gi|154698286|gb|EDN98024.1| hypothetical protein SS1G_12881 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1207

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
             +   + K    +   K+ AL  ++ K   N   +++   F+  L  L+      +    
Sbjct: 952  CIKSFDVKKNAWMDSGKVSALVELVTKYKENGDRVLIFSQFSLVLDILESVLNTTKITYT 1011

Query: 94   -------LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +D+    I+ + +   I        + G G+NL Y  N ++ F   ++ ++  
Sbjct: 1012 RIDGSTKIDERQAYIERFRDDADITAFLLTTKAGGTGINLMY-ANKVIIFDGSFNPQDDV 1070

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            Q        R  + G  R V V  L+ + TI+E + +  R+K
Sbjct: 1071 QA-----ENRAHRVGQTRDVEVVRLVTKGTIEEAIWKMGRSK 1107


>gi|157870828|ref|XP_001683964.1| helicase-like protein [Leishmania major strain Friedlin]
 gi|68127031|emb|CAJ05517.1| putative helicase-like protein [Leishmania major strain Friedlin]
          Length = 1043

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
               K++ L+ ++ +        ++  +F + L  L+          +         +  
Sbjct: 599 DPSAKMRYLDTLLPQLKEQGHRCLIFSNFTTTLDLLEAMCHLRGHSYERLDGSCNRVERE 658

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N       L      + G G+ L  G + ++ F            ++R    R 
Sbjct: 659 LSILRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFD-----AHFNPQLDRQAADRA 712

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 713 HRIGQARTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 756


>gi|296424567|ref|XP_002841819.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638068|emb|CAZ86010.1| unnamed protein product [Tuber melanosporum]
          Length = 823

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAH 115
           N   +++  +    L  L K F              +LD     + E+N +    +    
Sbjct: 433 NDDKVLIFSYSLQLLRILHKLFQSTEYNVCYFDGSMSLDDRTNVVAEFNSDPSQFVFLIS 492

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V F   W+     Q        R  + G  R V V+ LI   T
Sbjct: 493 TRAGGVGLNIT-AANKVVIFDPNWNPSYDLQA-----QDRAYRIGQTRDVEVFRLILAGT 546

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 547 IEEIVYARQIYKQQQAN 563


>gi|255945291|ref|XP_002563413.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588148|emb|CAP86246.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 944

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 51  VHDEKIKALE-VIIEK---ANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + ++   ++    I+   F S L     RL+ A      LD      Q
Sbjct: 768 TSSTKIEMLLYELFQERSKSHTPKSIIFSQFTSMLQLVEWRLRHAGFNTVMLDGSMTPAQ 827

Query: 103 EWNE-------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                        + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 828 RQKSIEYFMTKADVEVFLVSLKAGGVALNLTEASRVFI-IDPWWNPAAEWQSADR----- 881

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G +R   V  L  +++++  ++Q    K+ +
Sbjct: 882 SHRIGQQRPCVVTRLCIEDSVESRIIQLQEKKANL 916


>gi|169614245|ref|XP_001800539.1| hypothetical protein SNOG_10260 [Phaeosphaeria nodorum SN15]
 gi|160707308|gb|EAT82595.2| hypothetical protein SNOG_10260 [Phaeosphaeria nodorum SN15]
          Length = 1073

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 21/151 (13%)

Query: 53   DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDP 98
              K +AL    + I +    A  +V   F S L  ++ A          F    +     
Sbjct: 927  SAKTQALLTHLKHIRKDDKTAKSVVFSQFTSFLDLIEPALARDHIPFLRFDGSLSQKARA 986

Query: 99   CTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + E+     P +L     + G GLNL    N+ +    WW      Q I+R+      
Sbjct: 987  HILTEFTSSPKPYVLLLSLRAGGVGLNLTCAQNVFMM-DPWWSFAVEAQAIDRV-----H 1040

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + G +R V V   + + +I+E +L+    K 
Sbjct: 1041 RMGQERDVRVIRFVVEGSIEEKMLRIQDRKK 1071


>gi|317149015|ref|XP_001823065.2| SNF2 family helicase [Aspergillus oryzae RIB40]
          Length = 924

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 25/200 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+  C +    I   ++  +    +  +   V  D +         KI+AL  I+ 
Sbjct: 707 QVIERQHKCPMCRAEITDTSTLVEPAVEMGESTETVVADPD-----TPSSKIEALIKILT 761

Query: 65  K---ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIP 110
               A     +V   + S L  L+               +  +L +D  T +  ++    
Sbjct: 762 AQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARDNSTYRFSHDPNCK 821

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  + C  GLNL    N  +    WW      Q ++R+      + G  R   V+ L
Sbjct: 822 VLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQTRETTVWRL 875

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + +++I++ VL    TK  +
Sbjct: 876 VMEDSIEDRVLAIQETKRKL 895


>gi|221507795|gb|EEE33382.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 2556

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 60   EVIIEKANAA--PIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEG 107
            E +I+++      ++V   F   L  L+     + +   R             I+++N  
Sbjct: 1204 EFVIDRSQPKAQRLLVFTQFQLVLDELEAYCHYRGWKYLRLDGSTNKFVRELDIRDFNSE 1263

Query: 108  K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    N +V +   W+     Q I+R       + G +RAV
Sbjct: 1264 NSTYFVYLISTRAGGLGINLT-SANHVVLYDHDWNPFIDLQAIDR-----AHRIGQQRAV 1317

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+ L+ + T++E +  R   K  +  LL+ 
Sbjct: 1318 HVWSLVNEWTVEERMAFRREQKLRLDKLLVQ 1348


>gi|221483307|gb|EEE21626.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 2556

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 60   EVIIEKANAA--PIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEG 107
            E +I+++      ++V   F   L  L+     + +   R             I+++N  
Sbjct: 1204 EFVIDRSQPKAQRLLVFTQFQLVLDELEAYCHYRGWKYLRLDGSTNKFVRELDIRDFNSE 1263

Query: 108  K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    N +V +   W+     Q I+R       + G +RAV
Sbjct: 1264 NSTYFVYLISTRAGGLGINLT-SANHVVLYDHDWNPFIDLQAIDR-----AHRIGQQRAV 1317

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+ L+ + T++E +  R   K  +  LL+ 
Sbjct: 1318 HVWSLVNEWTVEERMAFRREQKLRLDKLLVQ 1348


>gi|237839503|ref|XP_002369049.1| SNF2 family N-terminal domain containing protein [Toxoplasma gondii
            ME49]
 gi|211966713|gb|EEB01909.1| SNF2 family N-terminal domain containing protein [Toxoplasma gondii
            ME49]
          Length = 2556

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 60   EVIIEKANAA--PIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEG 107
            E +I+++      ++V   F   L  L+     + +   R             I+++N  
Sbjct: 1204 EFVIDRSQPKAQRLLVFTQFQLVLDELEAYCHYRGWKYLRLDGSTNKFVRELDIRDFNSE 1263

Query: 108  K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    N +V +   W+     Q I+R       + G +RAV
Sbjct: 1264 NSTYFVYLISTRAGGLGINLT-SANHVVLYDHDWNPFIDLQAIDR-----AHRIGQQRAV 1317

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+ L+ + T++E +  R   K  +  LL+ 
Sbjct: 1318 HVWSLVNEWTVEERMAFRREQKLRLDKLLVQ 1348


>gi|114651885|ref|XP_001153391.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 1
           [Pan troglodytes]
          Length = 2198

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 732 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 791

Query: 94  L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 792 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 850

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 851 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 902


>gi|308160977|gb|EFO63440.1| Transcriptional regulator ATRX, putative [Giardia lamblia P15]
          Length = 1367

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----LD 95
           YD           K      +I   K N    ++   +      L+            LD
Sbjct: 645 YDLTVRSITALSSKYSLFMELITHIKNNNHRALIFCDYKLIFNILEHLLSYNDIPYLRLD 704

Query: 96  KDPCTIQE-------WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                + E       +N   K   L         GLNL  G N ++ F+  W L+  +Q 
Sbjct: 705 GTITDVSERDKICKSFNANKKYTALLISIKLGSMGLNLT-GANRVILFAPAWSLQIEEQA 763

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           I R       + G KR V VY L   NT++E ++ R   K+ I ++ L+  K  ++
Sbjct: 764 IAR-----AYRMGQKRNVVVYKLACINTLEEKMVVRQLQKAGIANVTLDDEKHRSV 814


>gi|290889290|gb|ADD69942.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1785

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 787 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 846

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 847 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKAS 900

Query: 176 IDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           ++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 901 VEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 933


>gi|159465629|ref|XP_001691025.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158279711|gb|EDP05471.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1061

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCL----QL---ANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  ++++A N  +   K L    QL    N    +                
Sbjct: 415 EMQKKWYAALLQKDVDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLV 474

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQ---------KAFPQGRTLDK-DP 98
            +  K+  L+ ++ +       +++       +  L+              G T  +   
Sbjct: 475 ENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTDGEARD 534

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N       +      + G G+NL    +I+V +   W+ +   Q ++R      
Sbjct: 535 NMIDEFNRPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQMDLQAMDR-----A 588

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    +N+I+E V+++   K  +  L++ 
Sbjct: 589 HRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQ 628


>gi|327266997|ref|XP_003218289.1| PREDICTED: helicase-like transcription factor-like [Anolis
           carolinensis]
          Length = 978

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 42  YDEEKHWKE--VHDEKIKALE-VIIEKANAAPI---IVAYHFNSDLARLQKAFPQGR--- 92
            D  +   +  V   KI AL   +IE     P    ++   F   L+ ++    +     
Sbjct: 792 SDSGRKTDQGWVSSSKINALMHALIELRKQNPTVKSLIISQFTKFLSLIEIPLKESGFAF 851

Query: 93  -------TLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                  T  K    I+ +   +     ++     + G GLNL    + +      W+  
Sbjct: 852 TRLDGSMTRKKRVEAIRHFQSNETGSPTVMLLSLKAGGVGLNLT-AASRVFLMDPAWNPA 910

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              Q  +R       + G K+ V +   I +N+++E +L+    K  + 
Sbjct: 911 AEDQCFDRC-----HRLGQKQDVIITKFIVKNSVEENMLKIQHKKRELA 954


>gi|303271765|ref|XP_003055244.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226463218|gb|EEH60496.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 481

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 52  HDEKIKA-LEVIIEKANAAPII-----------VAYHFNSDLARLQKAFPQGRT------ 93
           +  KI+A LE +     AAP++           +   F + L  +               
Sbjct: 216 NSAKIRAVLEQLDATRAAAPVVDGRRTRPEQTVLFSQFTTFLDIVGPKIEDAGHSVLRLD 275

Query: 94  ----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               L K    +Q +  G+  +L     +   GLNL    N ++    WW+     Q I+
Sbjct: 276 GTQGLPKRAAIVQAFRRGEATVLLVSLKAASLGLNLNCANN-VILVDPWWNAAIEDQAID 334

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + G  + V V  LI   +++  +      K  I +  L
Sbjct: 335 RC-----HRIGQTKEVKVTRLIVSESVELRIQALQERKRAIFNAAL 375


>gi|1448983|gb|AAC37264.1| chromodomain-helicase-DNA-binding protein [Drosophila melanogaster]
          Length = 1883

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 822 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 881

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 882 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 941 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|17137266|ref|NP_477197.1| Chromodomain-helicase-DNA-binding protein 1 [Drosophila
           melanogaster]
 gi|75009913|sp|Q7KU24|CHD1_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase Chd1
 gi|7295870|gb|AAF51170.1| Chromodomain-helicase-DNA-binding protein 1 [Drosophila
           melanogaster]
          Length = 1883

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 822 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 881

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 882 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 941 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|198452987|ref|XP_001359022.2| GA10321 [Drosophila pseudoobscura pseudoobscura]
 gi|198132165|gb|EAL28165.2| GA10321 [Drosophila pseudoobscura pseudoobscura]
          Length = 936

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--RTLD--------KDPCTIQEWN 105
           I+ L+ I+E      +IV   + S L  +++   +   +TLD        +    ++++N
Sbjct: 768 IQKLQSILEGTTDK-VIVVSQWTSFLDIIREYLNEHDWQTLDFNGKMDATEREVVLKDFN 826

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +L     S G GLNL    N L+   L W+ +  +Q  +RI      + G ++
Sbjct: 827 VVQNSKRILLLSLTSGGVGLNLNV-ANHLLLVDLHWNPQLERQAQDRI-----YRYGQQK 880

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             F+Y  + Q+T+++ +      K  I +++L 
Sbjct: 881 PTFIYRFMCQDTVEQRIKALQDYKLEIANVVLQ 913


>gi|190408727|gb|EDV11992.1| DNA repair protein RAD16 [Saccharomyces cerevisiae RM11-1a]
 gi|207347673|gb|EDZ73768.1| YBR114Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270306|gb|EEU05519.1| Rad16p [Saccharomyces cerevisiae JAY291]
 gi|290878128|emb|CBK39187.1| Rad16p [Saccharomyces cerevisiae EC1118]
          Length = 790

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 610 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 667

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 668 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 726

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 727 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 770


>gi|322700580|gb|EFY92334.1| DNA repair protein rad-5 [Metarhizium acridum CQMa 102]
          Length = 1138

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 52   HDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
               K+ AL   +     E+ +   + V   F S L+ ++ A  +                
Sbjct: 980  SSAKVAALISELRVLRKERPHMKSV-VFSQFTSFLSLIEPALARINVKFLRLDGSMAQKA 1038

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++++ E K   +L     + G GLNL   G  +     WW      Q I+R+    
Sbjct: 1039 RAAVLEDFTEKKGFMVLLISLRAGGVGLNLTSAG-RVFMMDPWWSFAVEAQAIDRV---- 1093

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + G +  V +   I + +++E +L+    K 
Sbjct: 1094 -HRLGQEDEVVIKRFIVKQSVEERMLRVQERKK 1125


>gi|317138165|ref|XP_001816719.2| chromatin remodeling complex subunit (Chd3) [Aspergillus oryzae
           RIB40]
          Length = 1230

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
           K++ L++++ K       +++   F  +L  ++        L           +    I 
Sbjct: 724 KLQLLQLMLPKLRERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMID 783

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N    P         S G G+NL    + ++     ++  +  Q + R       + G
Sbjct: 784 QYNAQDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRIG 837

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            K  V V+ L+ + + +E ++Q  + K  +  +L++ +  E
Sbjct: 838 QKNKVLVFQLMTRGSAEEKIMQIGKKKMVLDHVLIDRMVSE 878


>gi|301117486|ref|XP_002906471.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
            infestans T30-4]
 gi|262107820|gb|EEY65872.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
            infestans T30-4]
          Length = 2158

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 18/141 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPC-TIQEWNEG--KIPLLFA 114
            +   I++   F   L  L++             G T        I  ++    K  +   
Sbjct: 1218 DGHKILIFSQFLKQLDLLERYCEANSFVFERLDGSTGGSVRQSAIDRFSRPHSKSFIFLL 1277

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ F   W+     Q   R       + G K++V +Y L+ +N
Sbjct: 1278 STKAGGVGINL-IAADTVIIFDSDWNPMNDLQAQSRC-----HRIGQKKSVQIYRLVTRN 1331

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T +  +  R   K  ++  +L
Sbjct: 1332 TYESEMFDRASRKLGLEHAVL 1352


>gi|45184972|ref|NP_982690.1| AAR147Wp [Ashbya gossypii ATCC 10895]
 gi|44980593|gb|AAS50514.1| AAR147Wp [Ashbya gossypii ATCC 10895]
          Length = 1580

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDK--DPCTIQEWNEG 107
            ++ +++ +    +IV   F +    LQ    +           T++       I+ +   
Sbjct: 1409 IKTVLDNSTDEKLIVFSQFTTFFDILQFFIKKVLNVSYLRYDGTMNGNVRASVIERFYRE 1468

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K   LL     +   GL L    N ++    +W+    +Q ++R       +   +R V+
Sbjct: 1469 KNERLLLISMKAGNSGLTLTC-ANHVILVDPFWNPYVEEQAMDRC-----YRISQQREVY 1522

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++ L+ +NTI++ +++    K T+ +  ++
Sbjct: 1523 IHRLLLKNTIEDRIVELQNRKRTLVENAMD 1552


>gi|3413850|dbj|BAA32289.1| KIAA0444 protein [Homo sapiens]
          Length = 978

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 39  DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 98

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 99  TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 154

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 155 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 192


>gi|291239125|ref|XP_002739475.1| PREDICTED: kismet-like, partial [Saccoglossus kowalevskii]
          Length = 1069

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 69/206 (33%), Gaps = 38/206 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           + ++  D         N   + +  +Q A   V  D          + +  L+       
Sbjct: 83  EEQIMLDFPEN-----NYLRQLLALIQSAGKMVLID----------KLLPKLKE-----G 122

Query: 68  AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQEWNEGKIP--LLFAH 115
              +++       L  L     QK +P  R   +         I  +++      +    
Sbjct: 123 GHKVLIFSQMVKCLDILEDYLLQKRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 182

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY LI +N+
Sbjct: 183 TRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQSKLVKVYRLITRNS 236

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
            +  +  R   K  +   +L +++ +
Sbjct: 237 YEREMFDRASLKLGLDKAVLQSMRHQ 262


>gi|260174930|ref|ZP_05761342.1| helicase domain-containing protein [Bacteroides sp. D2]
 gi|315923171|ref|ZP_07919411.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697046|gb|EFS33881.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 557

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 35/209 (16%)

Query: 2   KQYHKFQRELYC------DLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L        D   E IE         +     Q++            +   
Sbjct: 340 KEYVDAERDLIMYLQKYKDADDEKIEKALRGEVMVRINILRQIS-----------ARGKV 388

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQE------WN 105
            + I+ ++   E  N   II+    +  + +L++ FP       +D   +++       N
Sbjct: 389 RDVIEFVKDFRE--NGKKIILFCSLHEVVDQLKRYFPTAVSVTGRDSQDVKQRAVDAFQN 446

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K  ++     + G GL L    N + F    W   +  Q  +R       + G K +V
Sbjct: 447 NPKTDIIICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSV 500

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             YY + + TIDE V + ++ K  I + +
Sbjct: 501 TCYYFLGRRTIDEKVYRIIQEKKNIANAV 529


>gi|281211051|gb|EFA85217.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1186

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 79/218 (36%), Gaps = 31/218 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVK-CLQL--ANGAVYYDEEKHWKEV--------H 52
           Y +   + +  L G  ++  +   K +  C+QL  A    Y  +    +          +
Sbjct: 434 YKRLLSKDFEALHGVGVKGSSGRVKLLNICMQLRKACNHPYLFDGAEEQPYTTGDHLINN 493

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  L+ ++ +     + +++   +   L  L+                         
Sbjct: 494 SGKMVLLDKLLGRLKQRGSRVLIFSQWARMLDILEDYLLYRDYSYCRIDGSTDSQTRENY 553

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +NE   K  +      + G G+ L    ++++ F   W+ +   Q        R  +
Sbjct: 554 IESFNEPGSKHFVFILTTRAGGLGITL-NTADVVILFDSDWNPQMDLQA-----QDRAHR 607

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V VY  + +++++E ++++   K  +  +++ 
Sbjct: 608 IGQTKPVTVYRFVTESSMEEKMVEKAELKLQLDAVVIQ 645


>gi|260812970|ref|XP_002601193.1| hypothetical protein BRAFLDRAFT_183803 [Branchiostoma floridae]
 gi|229286484|gb|EEN57205.1| hypothetical protein BRAFLDRAFT_183803 [Branchiostoma floridae]
          Length = 964

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
           +A    +++       L  L+          +    G T       I  +N    P  + 
Sbjct: 614 QAQGHRVLIFSQMTKMLDILEDFCEAEGYKYERIDGGVTGTLRQDAIDRFNAPGSPHFVF 673

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + +  +   W+     Q       +R  + G    V +Y  + 
Sbjct: 674 LLSTRAGGLGINL-ATADTVFIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 727

Query: 173 QNTIDELVLQRLRTKSTI 190
           + +++E + Q  + K  +
Sbjct: 728 RASVEERITQVAKKKMML 745


>gi|195166785|ref|XP_002024215.1| GL22908 [Drosophila persimilis]
 gi|194107570|gb|EDW29613.1| GL22908 [Drosophila persimilis]
          Length = 1898

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 23/171 (13%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ------ 85
            Q A G +Y   E +       K+  L  ++ +  +    +++       L  L+      
Sbjct: 899  QTAAGGLY---EINSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFLEGE 955

Query: 86   ----KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                +    G T       I  +N    +  +      + G G+NL    + ++ +   W
Sbjct: 956  QYKYERIDGGITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDW 1014

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     Q       +R  + G    V +Y  + +N+++E V Q  + K  +
Sbjct: 1015 NPHNDIQA-----FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMML 1060


>gi|194855230|ref|XP_001968500.1| GG24470 [Drosophila erecta]
 gi|190660367|gb|EDV57559.1| GG24470 [Drosophila erecta]
          Length = 1886

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 822 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 881

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 882 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 941 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|300175679|emb|CBK21222.2| unnamed protein product [Blastocystis hominis]
          Length = 523

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
            + +++       L  L+                         I  +N       +    
Sbjct: 323 GSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEINSFNAENSTKFVFLLS 382

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ +   W+ +   Q  +R       + G K+ V VY L+ + T
Sbjct: 383 TRAGGLGINL-ATADTVILYDSDWNPQMDLQAEDR-----AHRIGQKKTVNVYRLVTEGT 436

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E++++R + K  +  L++ 
Sbjct: 437 VEEMIVERAKLKLRLDTLVIQ 457


>gi|198466497|ref|XP_002135204.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
 gi|198150627|gb|EDY73831.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
          Length = 2036

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 23/171 (13%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ------ 85
            Q A G +Y   E +       K+  L  ++ +  +    +++       L  L+      
Sbjct: 1041 QTAAGGLY---EINSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFLEGE 1097

Query: 86   ----KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                +    G T       I  +N    +  +      + G G+NL    + ++ +   W
Sbjct: 1098 QYKYERIDGGITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDW 1156

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     Q       +R  + G    V +Y  + +N+++E V Q  + K  +
Sbjct: 1157 NPHNDIQA-----FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMML 1202


>gi|73977360|ref|XP_864115.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 8
           (CHD-8) (Helicase with SNF2 domain 1) isoform 3 [Canis
           familiaris]
          Length = 1934

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 466 ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 525

Query: 94  L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 526 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 584

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 585 QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 636


>gi|255561188|ref|XP_002521606.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus
           communis]
 gi|223539284|gb|EEF40877.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus
           communis]
          Length = 788

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFAH 115
              +++   +   L  +   F +             LD+    I+E+N       +    
Sbjct: 558 KHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIEEFNNVDSNYRIFLLS 617

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L    +
Sbjct: 618 TRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLATAQS 671

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++  +L+R  +K  ++ +++
Sbjct: 672 VEGRILKRAFSKLKLEHVVI 691


>gi|154284692|ref|XP_001543141.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406782|gb|EDN02323.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 214

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++  
Sbjct: 24  RLDGSVEATKRQSIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQKDI 82

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q ++R       + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 83  QAMDR-----AHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 128


>gi|149638830|ref|XP_001506039.1| PREDICTED: similar to RAD54B protein [Ornithorhynchus anatinus]
          Length = 883

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 50  EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
           EV   K++ L  ++    E + +  +++  ++   L  LQ+                 + 
Sbjct: 537 EVDSGKLRVLIKLLAVIRELSPSEKVVLVSNYTQTLTILQEICKRYGYAHTRLDGQTPIS 596

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  +N    P  +      + G       GG+ L+ + + W+     Q + R+  
Sbjct: 597 QRQHIIDGFNSKHSPDFVFLLSSKAGGV-GLNLVGGSHLILYDIDWNPATDIQAMARVW- 654

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK-ETIH 204
               + G KR V +Y L+   TI+E + QR  +K ++   +++  K  E IH
Sbjct: 655 ----RDGQKRPVHIYRLLTTGTIEEKIYQRQISKQSLSGTVVDLTKASEHIH 702


>gi|189515794|ref|XP_697956.3| PREDICTED: chromodomain-helicase-DNA-binding protein 7 [Danio rerio]
          Length = 3094

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDK-----DPCTIQEWNEGKIP--LL 112
            KA    +++       L       +Q+ +P  R   +         I  ++       + 
Sbjct: 1355 KAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVF 1414

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  ++V +Y LI 
Sbjct: 1415 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKSVKIYRLIT 1468

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  +   K  +   +L ++
Sbjct: 1469 RNSYEREMFDKASLKLGLDKAVLQSM 1494


>gi|328772759|gb|EGF82797.1| hypothetical protein BATDEDRAFT_9561 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 912

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAH 115
               +++       L  L+                 ++ +    +  +NE +   +    
Sbjct: 618 QGHRVLLFCQTRQMLDILELFIKNEGYAYLRMDGSTSIQQRSKIVDCYNEDESYFVFLLT 677

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL    N ++ F   W+     Q  ER       + G K++V +Y L+   T
Sbjct: 678 TKVGGLGINLT-SANRVIIFDPDWNPSTDMQARERAW-----RLGQKKSVTIYRLMTSGT 731

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E +  R   K  + + +L
Sbjct: 732 IEEKIYHRQIFKQFLTNKIL 751


>gi|115939069|ref|XP_001193731.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
            partial [Strongylocentrotus purpuratus]
          Length = 2038

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
            +   +++       L  L+          +    G T       I  +N    +  +   
Sbjct: 1037 DNHRVLIFSQMTRMLDLLEDFLEGEGYKYERIDGGVTGGLRQEAIDRFNAPGAEQFVFLL 1096

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + + 
Sbjct: 1097 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQSNKVMIYRFVTRA 1150

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1151 SVEERITQVAKKKMML 1166


>gi|323305950|gb|EGA59685.1| Rad16p [Saccharomyces cerevisiae FostersB]
          Length = 765

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 585 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 642

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 643 QGXMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 701

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 702 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 745


>gi|307111435|gb|EFN59669.1| hypothetical protein CHLNCDRAFT_49470 [Chlorella variabilis]
          Length = 1117

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNE 106
           L+ ++        ++       L  L+ A  +                +++    Q    
Sbjct: 668 LKNLV--GEGHRTLIFSQSRVMLNILESAIKEEQWRYCRIDGSVASAAEREARVRQFQTS 725

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP+        G GL L    + ++     W+     Q ++R       + G KR V 
Sbjct: 726 HTIPIFLLTSQVGGLGLTLT-AADRVIILDPAWNPSTDNQSVDR-----AYRIGQKRDVV 779

Query: 167 VYYLIAQNTIDELVLQRLRTKS 188
           VY LI+  T++E + +R   + 
Sbjct: 780 VYRLISCGTVEENIYRRQDLRD 801


>gi|258572078|ref|XP_002544816.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
 gi|237905086|gb|EEP79487.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
          Length = 1435

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 18/147 (12%)

Query: 65   KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KA+   +++ +          D  R   L+     G T  D     ++ +N         
Sbjct: 891  KASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDDRSELLRLFNAPGSDYFCF 950

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNLQ   + ++ +   W+  +  Q        R  + G K  V +  LI+
Sbjct: 951  LLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIS 1004

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALK 199
             N+++E +L+R + K  +   ++ A K
Sbjct: 1005 SNSVEERILERAQFKLDMDGKVIQAGK 1031


>gi|116180352|ref|XP_001220025.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
 gi|88185101|gb|EAQ92569.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
          Length = 1644

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 20/161 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDP 98
               K+  L+ ++ K   +   +++       L  L           +            
Sbjct: 777 TSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILGDYLRVRGYQFQRLDGTIPAGPRR 836

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N              + G G+NL    + ++ +   W+ +   Q + R      
Sbjct: 837 MAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQADLQAMAR-----A 890

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G KR V VY L+A+ TI+E V+ R R K  ++ L + A
Sbjct: 891 HRIGQKRPVNVYRLVAKQTIEEEVVNRARNKLFLEYLTIQA 931


>gi|323356072|gb|EGA87877.1| Rad16p [Saccharomyces cerevisiae VL3]
          Length = 593

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 23/162 (14%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQG------- 91
           +    W+     KI+AL E + + ++N   I  IV   F S L  ++    +        
Sbjct: 431 NMSGKWQ--SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 488

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D       N  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 489 QGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 547

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            +R+      + G  R V +     +++I+  +++    K  
Sbjct: 548 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKXK 584


>gi|83771802|dbj|BAE61932.1| unnamed protein product [Aspergillus oryzae]
          Length = 826

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 25/200 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+  C +    I   ++  +    +  +   V  D +         KI+AL  I+ 
Sbjct: 609 QVIERQHKCPMCRAEITDTSTLVEPAVEMGESTETVVADPD-----TPSSKIEALIKILT 663

Query: 65  K---ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIP 110
               A     +V   + S L  L+               +  +L +D  T +  ++    
Sbjct: 664 AQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARDNSTYRFSHDPNCK 723

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  + C  GLNL    N  +    WW      Q ++R+      + G  R   V+ L
Sbjct: 724 VLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQTRETTVWRL 777

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           + +++I++ VL    TK  +
Sbjct: 778 VMEDSIEDRVLAIQETKRKL 797


>gi|297694662|ref|XP_002824591.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like isoform 2
            [Pongo abelii]
          Length = 2302

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|290974011|ref|XP_002669740.1| predicted protein [Naegleria gruberi]
 gi|284083291|gb|EFC36996.1| predicted protein [Naegleria gruberi]
          Length = 1143

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDL---ARLQKAFPQGRTL--------DKDPC 99
             K++ +  ++++        ++   + + L    R+     + +TL         +   
Sbjct: 630 SSKLQIIVKLLKEHKKTGHRTLIFSQYKTMLDIVERIITEHLKLKTLRIDGGVAAKERQA 689

Query: 100 TIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +  +         S G GL L    + ++     W+    QQ ++R       +
Sbjct: 690 RVDLFQKNNMYSCFLLTTGSGGVGLTLT-AADRVILIDPHWNPAVDQQAVDR-----AYR 743

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G  + V  Y LI   T++E+V +R   K  +
Sbjct: 744 VGQTKNVVTYRLITVGTLEEVVYRRQVIKDGL 775


>gi|156101125|ref|XP_001616256.1| SNF2 family N-terminal domain containing protein [Plasmodium vivax
            SaI-1]
 gi|148805130|gb|EDL46529.1| SNF2 family N-terminal domain containing protein [Plasmodium vivax]
          Length = 2946

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 69   APIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLLFAHP 116
              +++   F   L  L+     + +   R             I+E+N       +     
Sbjct: 1218 HKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYLIST 1277

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N ++ +   W+     Q I+R       + G KR V V+ L+ + T+
Sbjct: 1278 RAGGLGINLT-AANHVIMYDEDWNPFIDLQAIDR-----AHRIGQKREVNVWKLMTEWTV 1331

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +  R   K  +  L++ 
Sbjct: 1332 EERMAFRREQKLKLDKLVVQ 1351


>gi|114651883|ref|XP_001153458.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 2 [Pan
            troglodytes]
          Length = 2302

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|114326455|ref|NP_065971.2| chromodomain-helicase-DNA-binding protein 8 isoform 2 [Homo sapiens]
 gi|225356486|gb|AAI56440.1| Chromodomain helicase DNA binding protein 8 [synthetic construct]
          Length = 2302

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|73946633|ref|XP_860170.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 15 [Canis familiaris]
          Length = 1550

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQL---ANGAVY----------YDEEKHW 48
             Y   Q +      G   +    A +     +QL    N                  +  
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIESQIFKTQRTRKD 1022

Query: 49   KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                  K + L+ I+   +A    +++     S +  ++  F           G T  +D
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|312372079|gb|EFR20122.1| hypothetical protein AND_20633 [Anopheles darlingi]
          Length = 2227

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 18/137 (13%)

Query: 66   ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLF 113
            +    +++       L  L+          +    G T       I  +N    P     
Sbjct: 1150 SQGHRVLIFSQMTKMLDILEDFLEGLGYKYERIDGGITGSIRQEAIDRFNAPGAPQFCFL 1209

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + +
Sbjct: 1210 LSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVTR 1263

Query: 174  NTIDELVLQRLRTKSTI 190
            N+++E V Q  + K  +
Sbjct: 1264 NSVEERVTQVAKRKMML 1280


>gi|302416497|ref|XP_003006080.1| DNA repair protein RAD16 [Verticillium albo-atrum VaMs.102]
 gi|261355496|gb|EEY17924.1| DNA repair protein RAD16 [Verticillium albo-atrum VaMs.102]
          Length = 983

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 17/133 (12%)

Query: 69  APIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPA 117
              IV  +F S L     RL++A      LD      Q            ++        
Sbjct: 830 HKSIVFSNFTSMLQLIEWRLRRAGVTTVMLDGSMTPAQRQASIDHFMKNPEVECFLVSMK 889

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    ++ +    WW+     Q  +R       + G  R   +  L  +++++
Sbjct: 890 AGGVALNLTEASHVFI-VDPWWNPAAEWQSADRC-----HRIGQGRPCTITRLCIEDSVE 943

Query: 178 ELVLQRLRTKSTI 190
             ++Q    K+ +
Sbjct: 944 SRIVQLQEKKTNM 956


>gi|238881028|gb|EEQ44666.1| chromatin remodelling complex ATPase chain ISW1 [Candida albicans
           WO-1]
          Length = 1056

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
             Q E Y  L  ++I+A N                +QL    N    +D           
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 445

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++K  A  + +++    +  L  L+              G T  
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 505

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 506 EDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 562

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V V+  + +  I+E VL+R   K  +  L++ 
Sbjct: 563 ---AHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQ 603


>gi|313768125|ref|YP_004061556.1| hypothetical protein BpV1_126 [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599732|gb|ADQ91753.1| hypothetical protein BpV1_126 [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 478

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 21/168 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------AFPQGRTLDKDPCTIQ 102
           E   +K++ L  +I +      +V   F  ++  +++             + +     ++
Sbjct: 296 EGRSKKMETLFKLISEHPDEKTLVFCQFKQEMDYIRENLTCPVFRIDGSVSKEDREKQLK 355

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE  +  +      + G GLN+Q   + + F +  W+     Q I R       ++G 
Sbjct: 356 LFNEAPQNSVFLIQVKAGGQGLNIQC-ASRIYFTAPCWNPATELQAIGR-----AHRSGQ 409

Query: 162 KRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLL--NALKKET 202
           KR V+V  L+  +T     +++ ++     KS +   +L  + LKK+ 
Sbjct: 410 KRKVYVKKLVYSDTPGYPSVEQAMIALQGHKSLLSAEVLRDDRLKKQI 457


>gi|195470933|ref|XP_002087761.1| GE14968 [Drosophila yakuba]
 gi|194173862|gb|EDW87473.1| GE14968 [Drosophila yakuba]
          Length = 1883

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 821 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 880

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 881 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 939

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 940 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 987


>gi|118383249|ref|XP_001024779.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89306546|gb|EAS04534.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1046

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--K 108
            I +K+    IIV+Y     L  LQ    Q               K    I  + +    
Sbjct: 662 EIAQKSTERIIIVSYW-TQTLDVLQIMIKQKNLKFVRLDGSVNAQKRQELIDRFQDPTND 720

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +     ++ G GLNL    N +V     W+     Q++ RI      + G  + V +Y
Sbjct: 721 IKVFLLCGSAGGTGLNL-SAANRMVLMEANWNPSNDLQVMGRIW-----RDGQTKPVHIY 774

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+A  T++E VLQR   K  +   +++
Sbjct: 775 RLVACGTMEEKVLQRQFLKEDLSQNVVD 802


>gi|68479793|ref|XP_716066.1| hypothetical protein CaO19.7401 [Candida albicans SC5314]
 gi|46437717|gb|EAK97058.1| hypothetical protein CaO19.7401 [Candida albicans SC5314]
          Length = 1056

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
             Q E Y  L  ++I+A N                +QL    N    +D           
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 445

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++K  A  + +++    +  L  L+              G T  
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 505

Query: 96  KDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 506 EDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 562

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V V+  + +  I+E VL+R   K  +  L++ 
Sbjct: 563 ---AHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQ 603


>gi|190346466|gb|EDK38558.2| hypothetical protein PGUG_02656 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1224

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQL---ANGAVYYDE----------EKHW 48
            Y +  +     +  E   A +       K +QL    N    ++E            + 
Sbjct: 721 LYQQMLKHNALFVGAEVGSAKSGIKGLNNKIMQLRKICNHPFVFEEVEDVLNPSRMTNNS 780

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS------DLARLQK----AFPQGRTLDK 96
                 K + L+ ++ K  A+   +++ +   S      D  RL+             + 
Sbjct: 781 IWRSSGKFELLDRVLPKFKASGHRVLLFFQMTSVMDIMEDFLRLRNMKYLRLDGATKAED 840

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    +         + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 841 RQEMLKLFNAPGSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDTDWNPHQDLQA-----QD 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI   +++E++L+R   K  I   ++ A K
Sbjct: 895 RAHRIGQKNEVRILRLITNESVEEVILERAHQKLDIDGKVIQAGK 939


>gi|150866903|ref|XP_001386652.2| hypothetical protein PICST_33727 [Scheffersomyces stipitis CBS
           6054]
 gi|149388159|gb|ABN68623.2| conserved hypothetical protein [Scheffersomyces stipitis CBS 6054]
          Length = 832

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 52  HDEKIKALEVI----IEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQ 102
           +  KI+ L+ +    IE  +   I++   F   L  L      +     R        ++
Sbjct: 579 NSSKIQVLQQLCFPLIEANH--KILIFSQFTKLLDLLHDWFNYQNIKICRLDGSTSQAVR 636

Query: 103 E-----WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +     +N  K   +      + G G+NL    + ++ F   W+ +   Q I+R+     
Sbjct: 637 DEQITQFNSDKDTKVFLLSTRAGGLGINLT-AADTVILFDNDWNPQMDLQAIDRV----- 690

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G    V V+  + +++I+EL++    +K  ++ L++ 
Sbjct: 691 HRIGQTNPVKVFRFLIRDSIEELLISSSCSKRFLETLVIQ 730


>gi|70998504|ref|XP_753974.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66851610|gb|EAL91936.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
          Length = 975

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+  C L   NI+  ++     V   + A+  V  D           KI+AL  I+
Sbjct: 759 QVIERQHKCPLCRANIDDNSTLVAPAVDLGESADEDVDADPNN-----PSSKIEALIKIL 813

Query: 64  EKANAAP---IIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKI 109
                AP    +V   + S L      LQ+       +D       +D  T +   + + 
Sbjct: 814 TAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARDASTYKFSKDPQC 873

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A  + C  GLNL    N  +    WW      Q ++R+      + G KR   V+ 
Sbjct: 874 KVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQKRETTVWR 927

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+ +NTI++ VL+   TK  +
Sbjct: 928 LVMENTIEDRVLEIQDTKRKL 948


>gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis
            carolinensis]
          Length = 2471

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+    Q R L          +     I  +++      + 
Sbjct: 1126 KAGGHKVLIFSQMVRCLDILEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1185

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1186 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLIT 1239

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  +   K  +   +L ++
Sbjct: 1240 RNSYEREMFDKASLKLGLDKAVLQSM 1265


>gi|256072060|ref|XP_002572355.1| helicase [Schistosoma mansoni]
 gi|238657512|emb|CAZ28586.1| helicase, putative [Schistosoma mansoni]
          Length = 1016

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 41/230 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS-------ASKTVKCLQL---ANGAVYYD--EEK 46
           K Y    K QR+LY  +  ++I+  NS              +QL    N    +D  E  
Sbjct: 340 KIYIGLSKMQRDLYTKILMKDIDVVNSVGNKVDRLRLLNILMQLRKCCNHPYLFDGLEPG 399

Query: 47  HWKEVHDEKIKAL--------EVIIEKANAAPIIVAYHFNSDLARLQ---------KAFP 89
                    +            +   K   + +++       +  L+             
Sbjct: 400 PPFTTDHHLVDNCGKLMLLDKLLPKLKQQGSRVLLFCQMTRMMDILEDYCLWRGHEYFRL 459

Query: 90  QGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G T  ++   +I E+N       L      + G G+NL    ++++ +   W+ +   Q
Sbjct: 460 DGSTPHEERQISIDEYNRPGSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQVDLQ 518

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R       + G  + V V+ LI ++T++E ++ R   K  + +L++ 
Sbjct: 519 AMDR-----AHRIGQTKTVRVFRLITEHTVEERIIMRAEMKLKLDNLVIQ 563


>gi|194207057|ref|XP_001918380.1| PREDICTED: chromodomain helicase DNA binding protein 8 [Equus
            caballus]
          Length = 2303

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|51476360|emb|CAH18170.1| hypothetical protein [Homo sapiens]
          Length = 2302

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|302773596|ref|XP_002970215.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
 gi|300161731|gb|EFJ28345.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
          Length = 1901

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 32/180 (17%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP------------ 89
            E K     +  K+  +  ++    +     +V       L  ++                
Sbjct: 1341 ESKRDVLENSGKMVLIMTLLSLNSSRGEKTLVFSQSLHTLDLIENFLDTIPLGGSQDVWN 1400

Query: 90   QGR---------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +G+         T  +       +N+     I  L     +   G N+  G N ++    
Sbjct: 1401 KGKEWLRLDGNTTASRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNMT-GANRVIIVDG 1459

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q      + R  + G  + VFVY L+A  T++E +  R  TK  I   +L+A
Sbjct: 1460 SWNPTHDLQA-----LFRAWRYGQTKPVFVYRLLAYGTMEEKIYNRQLTKEGIAARVLDA 1514


>gi|73946655|ref|XP_860536.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 25 [Canis familiaris]
          Length = 1548

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
             Y   Q +      G   +    + +     +QL     +    +H +            
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIEVKPTVGDECMAE 1020

Query: 53   ----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                  K + L+ I+   +A    +++     S +  ++  F           G T  +D
Sbjct: 1021 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1080

Query: 98   PCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        
Sbjct: 1081 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QD 1134

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1177


>gi|320589247|gb|EFX01709.1| chromodomain helicase [Grosmannia clavigera kw1407]
          Length = 1719

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------- 85
           G+V  +++         K+  L+ ++ K   +   +++       L  L           
Sbjct: 768 GSVRREDQIKGLITSSGKMMLLDQLLAKLKKDNHRVLIFSQMVKMLDLLADYLRVRGYQF 827

Query: 86  KAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +              I  +N              + G G+NL    + ++ +   W+ + 
Sbjct: 828 QRLDGTIPAGPRRMAINHFNAENSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA 886

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q + R       + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 887 DLQAMAR-----AHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 935


>gi|73977356|ref|XP_532624.2| PREDICTED: similar to chromodomain helicase DNA binding protein 8
            isoform 1 [Canis familiaris]
          Length = 2304

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|329954230|ref|ZP_08295324.1| helicase protein [Bacteroides clarus YIT 12056]
 gi|328527936|gb|EGF54922.1| helicase protein [Bacteroides clarus YIT 12056]
          Length = 562

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-------N 105
           KIKA    I         +IV  +    +  L+K FPQ  T+  +   I++        N
Sbjct: 397 KIKAAAEFIHDVIDGGEKLIVFAYLKEVVMELKKMFPQAVTVTGEDNAIRKQMSVDAFQN 456

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                L+  +  S G GL L    + + F    W   + +Q  +R       + G K  V
Sbjct: 457 NPDCTLIILNYKSGGTGLTLT-ASSRVAFIEFPWTFSDCEQAEDR-----AHRNGQKNNV 510

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             YY + +NTIDE +   ++ K  I + +
Sbjct: 511 NCYYFLGKNTIDEYMYDVIQRKKGIANGV 539


>gi|297297436|ref|XP_001096619.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Macaca
            mulatta]
          Length = 2301

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|289622059|emb|CBI51237.1| unnamed protein product [Sordaria macrospora]
          Length = 1194

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            +      I+   + S L  ++             +       +    IQE+     + +L
Sbjct: 1028 QQTDEKTIIFSQWTSHLDLIECSLKFKLNIKYHRYTGNMPRSQRDNAIQEFVENPDVKVL 1087

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +   GLNL     ++V    +W+     Q ++R       + G K  V +Y ++ 
Sbjct: 1088 LVSLKAGNAGLNLTVASRVIV-CDPFWNPFIEDQAVDR-----AHRIGQKSEVHIYKILV 1141

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + TI++ + +    K  I +  L+  + + + 
Sbjct: 1142 EETIEDRITELQNVKRDIVETALDETQSKQLG 1173


>gi|159126292|gb|EDP51408.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 975

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+  C L   NI+  ++     V   + A+  V  D           KI+AL  I+
Sbjct: 759 QVIERQHKCPLCRANIDDNSTLVAPAVDLGESADEDVDADPNN-----PSSKIEALIKIL 813

Query: 64  EKANAAP---IIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKI 109
                AP    +V   + S L      LQ+       +D       +D  T +   + + 
Sbjct: 814 TAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARDASTYKFSKDPQC 873

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A  + C  GLNL    N  +    WW      Q ++R+      + G KR   V+ 
Sbjct: 874 KVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----YRLGQKRETTVWR 927

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+ +NTI++ VL+   TK  +
Sbjct: 928 LVMENTIEDRVLEIQDTKRKL 948


>gi|296214427|ref|XP_002753817.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8 isoform 2
            [Callithrix jacchus]
          Length = 2304

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|63054489|ref|NP_593038.2| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces pombe 972h-]
 gi|38258935|sp|Q09772|RDH54_SCHPO RecName: Full=Meiotic recombination protein rdh54; AltName:
           Full=ATP-dependent helicase rdh54; AltName:
           Full=Meiotically up-regulated gene 34 protein; AltName:
           Full=RAD54 protein homolog 2
 gi|30519798|emb|CAA91068.3| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces pombe]
 gi|31323296|gb|AAP44116.1| meiotic recombination factor Rdh54 [Schizosaccharomyces pombe]
          Length = 811

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 51  VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           +   K++ L  +++         ++   +   L  ++                    +  
Sbjct: 529 LSSSKLQILAALLKSFQRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERD 588

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +  +N     +  +L     + G GLNL  G   L+ +   W+  +  Q + RI    
Sbjct: 589 LIVHNFNTSSFKEFSVLLLSSKAGGCGLNLT-GSTRLIIYEPSWNPAQDLQALSRI---- 643

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++G KR V +Y  ++   +DE +  R  TK  +    +++
Sbjct: 644 -YRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDS 684


>gi|325186402|emb|CCA20908.1| transcriptional regulator ATRX putative [Albugo laibachii Nc14]
          Length = 1323

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 34/181 (18%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH-----------------------FN 78
           + +H +     K+  L  ++E        +IV                            
Sbjct: 690 DYEHGELDFSGKMVVLFEMLEACQEIGDRVIVFSQSIATLNVIEMFIAQRNNRLRRSRKK 749

Query: 79  SDLARLQKAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFF 135
            D A        G T  +D    I+++N+    + ++F    + G G+NL  GGN +V F
Sbjct: 750 HDKAPFTSLRIDGSTSQQDRFRQIEQFNDPEEDVDVIFISTKAGGEGINL-CGGNRIVIF 808

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W+     Q +      R  + G  + VFVY  +A  T+++ V      K  +   ++
Sbjct: 809 DVCWNPCNDAQSM-----CRSYRFGQTKPVFVYRFVAGATMEKKVYDLQIRKEGVAKQIV 863

Query: 196 N 196
           +
Sbjct: 864 D 864


>gi|5911978|emb|CAB55959.1| hypothetical protein [Homo sapiens]
          Length = 1388

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 449 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 508

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 509 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 564

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 565 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 602


>gi|291000680|ref|XP_002682907.1| predicted protein [Naegleria gruberi]
 gi|284096535|gb|EFC50163.1| predicted protein [Naegleria gruberi]
          Length = 651

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
              K+  L+ ++EK       +++   + + L  L+          + F    T  +   
Sbjct: 173 SSSKLIVLDYLLEKHYGEGNKVVIFSQYTTTLDFLEYYLMLKEYKYQRFDGSNTKSERTE 232

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +        +      + G GLNL    N+++ + + W+    +Q   R       
Sbjct: 233 AVESFQHENSQDFVFLLSTKAGGVGLNL-ISANVVIEYDITWNPHADEQATNRC-----H 286

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V+VY  + Q +I++LVL+  + K  +   +
Sbjct: 287 RIGQTKTVYVYKFLIQKSIEDLVLKYTQEKLAMSTRV 323


>gi|169595490|ref|XP_001791169.1| hypothetical protein SNOG_00484 [Phaeosphaeria nodorum SN15]
 gi|160701103|gb|EAT91979.2| hypothetical protein SNOG_00484 [Phaeosphaeria nodorum SN15]
          Length = 1093

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 28/188 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE-------KIKALEVIIE--KANAAPIIVAYHF 77
           SK ++ L+LA    Y +  K+   +  +       K K L  +++   +N   +++  H 
Sbjct: 633 SKDLELLELACPRQYRELYKNRDSILKQSQREFCGKWKVLRRLLDFWHSNGDKVLIFSHS 692

Query: 78  NSDLARLQKAFPQGRTL------------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              L  L+  F    T             +     + ++N +    +      + G GLN
Sbjct: 693 VRLLRLLRGLFDIDGTKYNFSYLDGSMKYEDRSKVVADFNADPDQFVFLISTKAGGVGLN 752

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +    N +V     W+     Q        R  + G  R V V+ L++  TI+E+V  R 
Sbjct: 753 IT-SANKVVIVDPHWNPAYDLQA-----QDRAYRIGQTRDVEVFRLVSSGTIEEIVYARQ 806

Query: 185 RTKSTIQD 192
             K    +
Sbjct: 807 IYKQQQAN 814


>gi|293342563|ref|XP_002725263.1| PREDICTED: similar to putative repair and recombination helicase
           RAD26L isoform 2 [Rattus norvegicus]
 gi|293354404|ref|XP_002728495.1| PREDICTED: RAD26L hypothetical protein isoform 1 [Rattus
           norvegicus]
 gi|149029138|gb|EDL84423.1| similar to putative repair and recombination helicase RAD26L
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 1542

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + +   +++       L  LQ+             G T  ++    
Sbjct: 514 SGKMKVLDQLLNHFRKHRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 573

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q I+R       + 
Sbjct: 574 VKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPANDLQAIDR-----AYRI 627

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 628 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLH 659


>gi|71022005|ref|XP_761233.1| hypothetical protein UM05086.1 [Ustilago maydis 521]
 gi|46097644|gb|EAK82877.1| hypothetical protein UM05086.1 [Ustilago maydis 521]
          Length = 1834

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----------EV 51
            + Y       Y  L G     F+  +  ++  + +N    +D  +              +
Sbjct: 825  RMYKAILTRNYSLLSGATTAQFSLLNIAIELKKASNHPYLFDGTEIISDNREETLKGLVM 884

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPC 99
            H  K+  L+ ++ +  A+   +++             + S    + +      + +    
Sbjct: 885  HSGKMVLLDKLLARLKADGHRVLIFSQMVRMLDILSDYMSLRGYIHQRLDGTVSSEIRKK 944

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +N    P         + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 945  AIEHFNAEGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMAR-----AH 998

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   K  V V+  + ++T++E VL+R + K  ++  +++ +
Sbjct: 999  RLNSKFHVSVFRFLTKDTVEEDVLERAKRKMVLEYAIIHQM 1039


>gi|332026198|gb|EGI66340.1| Chromodomain-helicase-DNA-binding protein 1 [Acromyrmex echinatior]
          Length = 1821

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 42/224 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++     ++G      N   +  KC    N A         +E  +E    L+ 
Sbjct: 701 KNYEALRKG----VKGSTTTFLNIVIELKKC---CNHAFLTKPMDAEREKTNE--DYLQQ 751

Query: 62  IIEKAN---------------AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK----- 96
           +I  +                   +++       L  L     ++ FP  R         
Sbjct: 752 LIRGSGKLVLLDKLLVRLRDTGHRVLIFSQMVRMLDILGEYLQRRHFPFQRLDGSIKGEL 811

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 812 RKQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 866

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 867 -AHRIGQKNKVNIYRLVTKKSVEEEIVERAKQKMVLDHLVIQRM 909


>gi|300122317|emb|CBK22889.2| unnamed protein product [Blastocystis hominis]
          Length = 698

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
            + +++       L  L+                         I  +N       +    
Sbjct: 323 GSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEINSFNAENSTKFVFLLS 382

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ +   W+ +   Q  +R       + G K+ V VY L+ + T
Sbjct: 383 TRAGGLGINL-ATADTVILYDSDWNPQMDLQAEDR-----AHRIGQKKTVNVYRLVTEGT 436

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E++++R + K  +  L++ 
Sbjct: 437 VEEMIVERAKLKLRLDTLVIQ 457


>gi|323454465|gb|EGB10335.1| hypothetical protein AURANDRAFT_52962 [Aureococcus anophagefferens]
          Length = 258

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L     + G G+NL  G N +V F + W+    +Q +      R  + G KR VFVY
Sbjct: 82  CDVLLMSIKAGGEGINLT-GANRVVLFDVCWNPCFDRQAM-----CRAHRFGQKRPVFVY 135

Query: 169 YLIA-QNTIDELVLQRLRTKSTIQDLLLN 196
            L+A + T++  VL++ R K  +   ++ 
Sbjct: 136 RLVAPRGTMEAKVLRQQRRKELLVREVVE 164


>gi|224371596|ref|YP_002605760.1| Helicase, Snf2 family [Desulfobacterium autotrophicum HRM2]
 gi|223694313|gb|ACN17596.1| Helicase, Snf2 family [Desulfobacterium autotrophicum HRM2]
          Length = 888

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 26/185 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLAR 83
              ++   + N     D E H       K+K L+ II++    N   +++   + +    
Sbjct: 570 VLLLRMRMVCNSTYLIDRETHI----SPKLKELDNIIDELVVQNRRKMVIFSEWTTMTFL 625

Query: 84  LQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + K                 + K    I E+ N  +  +      + G GLNLQ   + +
Sbjct: 626 IAKHLSDMGIEFVELSGKVAVKKRQNLIDEFTNNPQCRVFL-STDAGGTGLNLQ-AADCV 683

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQ 191
           V F L W+  +  Q I R+      + G       V  LIA+N+I+E +L  ++ K+ + 
Sbjct: 684 VNFELPWNPAKMNQRIGRVS-----RIGQASQCINVINLIAKNSIEERILAGIQLKTDLF 738

Query: 192 DLLLN 196
             + +
Sbjct: 739 KGVFD 743


>gi|255933007|ref|XP_002557974.1| Pc12g11570 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582593|emb|CAP80784.1| Pc12g11570 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1229

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGK-IP 110
            +E  +    +V   + S L  ++                  TL      ++E+ +   I 
Sbjct: 1068 LEGQSPIKSVVFSAWTSHLDLIEIALQNNGLDGFTRLDGTMTLAARTRALEEFAKNDNIK 1127

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   + G GLNL     + +     ++     Q I+RI      + G  R V  +  
Sbjct: 1128 VLLATIGAGGVGLNLTSASRVFIM-EPQYNPAAVAQAIDRI-----HRLGQTRPVQTFQF 1181

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + +I+E +L   R K  + D  LN +K++    
Sbjct: 1182 IMKGSIEEKILDLARKKQEMADTSLNRVKQDKRET 1216


>gi|125805885|ref|XP_693071.2| PREDICTED: helicase-like transcription factor-like [Danio rerio]
 gi|169158941|emb|CAQ15009.1| helicase-like transcription factor [Danio rerio]
          Length = 942

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 25/168 (14%)

Query: 42  YDEEKHWKEVHDEKIKALE-VIIEKANAAPI---IVAYHFNSDLARLQKAF--------- 88
            D  ++W+     K  AL   +++  N  P    +V   F   L  L+ A          
Sbjct: 758 SDTGENWR--SSSKALALMSNLLKLRNEDPTVKSMVVSQFTGFLDVLEVALREYGFSFTR 815

Query: 89  PQGRTLDK-DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G  + +     I+++ +   G   ++     + G GLNL     + V     W+    
Sbjct: 816 LDGSLIQRARAKAIEDFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVM-DPAWNPAAE 874

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            Q ++R       + G  R V +   I +++++E +++  + K  + D
Sbjct: 875 DQCVDRC-----HRLGQSRDVVITKFIVKDSVEENMVKIQKKKQELVD 917


>gi|156401565|ref|XP_001639361.1| predicted protein [Nematostella vectensis]
 gi|156226489|gb|EDO47298.1| predicted protein [Nematostella vectensis]
          Length = 1360

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQ 90
            D   H       K+  +  ++ K       ++V       L  L+              
Sbjct: 536 VDRHTHAMIEASGKLVLIHKLLPKLKLGGHKVLVFSQMVRCLDILEDYLVHMKYPYERID 595

Query: 91  GRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           GR   +     I  +++      +      + G G+NL    + ++ F   W+ +   Q 
Sbjct: 596 GRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQA 654

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R       + G  R+V VY LI +N+ +  +  R   K  +   +L ++
Sbjct: 655 QARC-----HRIGQSRSVKVYRLITRNSYEREMFDRASMKLGLDKAVLQSM 700


>gi|46137317|ref|XP_390350.1| hypothetical protein FG10174.1 [Gibberella zeae PH-1]
          Length = 1588

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 80/231 (34%), Gaps = 37/231 (16%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL----ANGAVYYDEEKHWKEVH---- 52
            M +  +  + ++       +      S     +QL     +  +Y +  +          
Sbjct: 1023 MAKNPELIKAMF---SNSKMNKKERGSLNNILMQLRKCLCHPFMYSEAIEERHHDPTVLQ 1079

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD--- 97
                    K+  L+V++ K       +++   F   L  ++          R LD     
Sbjct: 1080 RNLVEASAKLLLLQVMLPKLQERGHRVLIFSQFLQQLDIIEDFLSGLGYDYRRLDGSIGS 1139

Query: 98   ---PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  I  +N  + P+        + G G+NL    + ++     ++  +  Q + R  
Sbjct: 1140 LEKQRRIDAFNAPESPVFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-- 1196

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + G K+ V  + L+  ++++E ++Q  + K  +   L+ ++  + +
Sbjct: 1197 ---AHRIGQKKKVLCFQLMTIDSVEERIMQIGKKKMALDHALIESMDDDEL 1244


>gi|224139702|ref|XP_002323235.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867865|gb|EEF04996.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 398

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 21/166 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
           +  K        K+ AL  +++++    + +  +V   F+  LA +++            
Sbjct: 216 ENPKKLSRTIPSKVSALIKLLKESRVVNSISKSVVFSLFDKMLALMEEPLEDAGFNTLRL 275

Query: 96  -------KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +    I++++  G   +L A   + G G+NL    + +     WW+    +Q 
Sbjct: 276 DASTDEIRQAEIIKKFSSAGADTVLLASLKTSGTGINLT-AASKVYLLEPWWNSAVEEQA 334

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           I R+      Q G +  V +  LIAQN+I+E +L+    K    + 
Sbjct: 335 INRV-----HQYGQQENVRIVRLIAQNSIEERILEMQERKKVANEA 375


>gi|190347304|gb|EDK39551.2| hypothetical protein PGUG_03649 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1117

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 27/170 (15%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------------------AFPQGR 92
             K+  L+ +++  ++     ++       L  L+K                        
Sbjct: 666 SGKMLVLKGLLQLWQSQGHRTLLFCQTKQMLDILEKLLVNLTRISDGTEYFNYMRMDGST 725

Query: 93  TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + K    +  +N      +        G G+NL  G + ++ +   W+     Q  ER 
Sbjct: 726 PISKRQGLVDMFNNNTNYDVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARERA 784

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 785 W-----RLGQKRDIVIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 829


>gi|195116617|ref|XP_002002850.1| GI10771 [Drosophila mojavensis]
 gi|193913425|gb|EDW12292.1| GI10771 [Drosophila mojavensis]
          Length = 1908

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----RLQKAFPQGRT 93
            +  DE          K+  L+ ++ +       +++       L      LQK     + 
Sbjct: 835  LQQDEALQVLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQR 894

Query: 94   LDK------DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            LD           +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 895  LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 953

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 954  QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1001


>gi|260806897|ref|XP_002598320.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
 gi|229283592|gb|EEN54332.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
          Length = 490

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 104 WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N        L      + G G+NL  G N ++ F   W+     Q I R+      + G
Sbjct: 375 FNSPDNERARLFLISTRAGGLGINL-VGANRVIIFDASWNPSHDVQSIFRV-----YRFG 428

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + VFVY  +AQ T++E +  R  TK ++   +++
Sbjct: 429 QGKPVFVYRFLAQGTMEEKIYDRQVTKQSLAARVVD 464


>gi|198412736|ref|XP_002121526.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a4, partial
           [Ciona intestinalis]
          Length = 586

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 55  KIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQ 102
           K + L+ ++ K       +++     S +  L+  F           G T  D     +Q
Sbjct: 56  KFELLDRVLPKLKKYNHRVLLFCQMTSTMTILEDYFAYRGHKYLRLDGSTKADDRGLMLQ 115

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N     I +      + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 116 KFNAPNSDIFIFLLSTRAGGLGLNLQ-SADTVIIYDSDWNPHQDIQA-----QDRAHRIG 169

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V V  L+  ++++E +L   R K  + + ++ A
Sbjct: 170 QTNEVRVLRLMTVSSVEEKILAAARYKLNVDEKVIQA 206


>gi|268572621|ref|XP_002641368.1| Hypothetical protein CBG13225 [Caenorhabditis briggsae]
          Length = 1077

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEW 104
            ++ +E I+EK     +++   + S L  +++              Q +  D+    +  +
Sbjct: 910  LEIVEDILEK--KEKVVIVSQWTSVLNLVEQHIQNGGHNYTSITGQVQVKDRQER-VDSF 966

Query: 105  N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N  +G   ++     + G       GGN LV   L W+    QQ  +RI      + G K
Sbjct: 967  NQEKGGARVMLLSL-TAGGVGLNLVGGNHLVMIDLHWNPALEQQACDRI-----YRMGQK 1020

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + V+++ LI +NTI++ V++    K T+   +L+      +
Sbjct: 1021 KPVYIHRLIVKNTIEQRVVELQEKKMTLAASVLDGTATRKM 1061


>gi|328802689|ref|NP_001179063.1| chromodomain-helicase-DNA-binding protein 8 [Bos taurus]
          Length = 2303

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            A   + +D           K+  ++ ++ K  A    +++       L  L+    Q R 
Sbjct: 836  ACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895

Query: 94   L----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L          +     I  +++      +      + G G+NL    +  + F   W+ 
Sbjct: 896  LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNP 954

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L ++
Sbjct: 955  QNDLQAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1006


>gi|224044013|ref|XP_002188531.1| PREDICTED: chromodomain helicase DNA binding protein 1-like
           [Taeniopygia guttata]
          Length = 888

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGKIPLLFAH 115
           A    +++       L  LQ              G    ++    I+ + +  I +    
Sbjct: 351 AGGHRVLLFSQMTQLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNFGQQPIFIFLLS 410

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++F    ++ +   Q I R       + G  + V +  LI ++T
Sbjct: 411 TRAGGVGMNLT-AADTVIFTDSDFNPQNDLQAIAR-----AHRIGQHKPVKIIRLIGRDT 464

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           ++E++ +R  +K  + + ++  
Sbjct: 465 VEEIIYRRAASKLRLTNAIVEG 486


>gi|167534499|ref|XP_001748925.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772605|gb|EDQ86255.1| predicted protein [Monosiga brevicollis MX1]
          Length = 524

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK--IPLL 112
           KA    +++     S +  L+  FP  +            D+    +Q++N       + 
Sbjct: 192 KATGHRVLIFCQMTSLITILEDFFPLIQIRSMRLDGATKADERASLLQQFNAADSDYDVF 251

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G +  V V+  + 
Sbjct: 252 VLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIGQQNEVRVFRFVT 305

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
            ++++E +L+  R K  +   ++ A
Sbjct: 306 VHSVEESILEAARFKLDVDQKVIQA 330


>gi|149638070|ref|XP_001509622.1| PREDICTED: similar to helicase SMARCAD1 [Ornithorhynchus anatinus]
          Length = 872

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K K LE I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 697 LDSGKFKTLEYILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 756

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 757 HLIDEFNTDMGIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 810

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  + V V  LI+Q TI+E +L+  + K  ++  +  A
Sbjct: 811 RVGQTKEVQVIKLISQGTIEESMLKINQHKLKLEQDMTTA 850


>gi|50552109|ref|XP_503529.1| YALI0E04136p [Yarrowia lipolytica]
 gi|49649398|emb|CAG79108.1| YALI0E04136p [Yarrowia lipolytica]
          Length = 959

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFPQGR------TLDKDPCT 100
              K+  L  ++ KA+    IV   F           +++     +         +D   
Sbjct: 787 ASAKVVKLLELL-KADPRKTIVFSQFTKFFDVLEPFLIRENIRYVKYDGSMPIRKRDAAL 845

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                +    +L         GLNL    N +V    WW+    +Q I+R+      + G
Sbjct: 846 ATLRADPDTTVLLCSLKCGALGLNLTC-ANRVVLLDPWWNPMVSEQAIDRV-----HRIG 899

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY     +++++ ++Q    K  +   ++N 
Sbjct: 900 QTVDVDVYEFSVVDSVEKKIMQLQDKKRKLAGSVING 936


>gi|28972640|dbj|BAC65736.1| mKIAA1122 protein [Mus musculus]
 gi|148666357|gb|EDK98773.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1`, isoform
            CRA_c [Mus musculus]
          Length = 1071

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K +AL  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 896  LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 955

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 956  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 1009

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 1010 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1046


>gi|309359914|emb|CAP32046.2| hypothetical protein CBG_13225 [Caenorhabditis briggsae AF16]
          Length = 1082

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEW 104
            ++ +E I+EK     +++   + S L  +++              Q +  D+    +  +
Sbjct: 915  LEIVEDILEK--KEKVVIVSQWTSVLNLVEQHIQNGGHNYTSITGQVQVKDRQER-VDSF 971

Query: 105  N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N  +G   ++     + G       GGN LV   L W+    QQ  +RI      + G K
Sbjct: 972  NQEKGGARVMLLSL-TAGGVGLNLVGGNHLVMIDLHWNPALEQQACDRI-----YRMGQK 1025

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + V+++ LI +NTI++ V++    K T+   +L+      +
Sbjct: 1026 KPVYIHRLIVKNTIEQRVVELQEKKMTLAASVLDGTATRKM 1066


>gi|327304687|ref|XP_003237035.1| DNA repair protein RAD16 [Trichophyton rubrum CBS 118892]
 gi|326460033|gb|EGD85486.1| DNA repair protein RAD16 [Trichophyton rubrum CBS 118892]
          Length = 935

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  N       IV   F S L     RL +A      LD     +Q
Sbjct: 759 TSSTKIEMLVFDLCQLRNKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 818

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 819 RQRSIDYFMKNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 873

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 874 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 920


>gi|302658647|ref|XP_003021025.1| hypothetical protein TRV_04890 [Trichophyton verrucosum HKI 0517]
 gi|291184900|gb|EFE40407.1| hypothetical protein TRV_04890 [Trichophyton verrucosum HKI 0517]
          Length = 921

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEK---ANAAPIIVAYHFNS 79
           ++   C +L + A    E+ +  +V       KI+AL  I+     A     +V   + S
Sbjct: 718 AEIKDCSELVSPAAELGEDCNQIDVESDSSSSKIQALIKILTAKGQAAGTKTVVFSQWTS 777

Query: 80  DLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++               +  +  +D    +   + +  ++ A    C  GLNL   
Sbjct: 778 FLDLIEPHLVLYNINFARIDGKMNSAQRDAAMSKFSRDSECTVMLASLNVCSVGLNL-VA 836

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +V    WW      Q ++R+      + G  R   ++ L+ +N+I++ VL   + K 
Sbjct: 837 ANQVVLADSWWAPAIEDQAVDRV-----YRLGQTRPTTIWRLVMENSIEDRVLDIQKEKR 891

Query: 189 TI 190
            +
Sbjct: 892 EL 893


>gi|221058551|ref|XP_002259921.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|193809994|emb|CAQ41188.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1445

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 45/206 (21%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKE---VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
            K++K LQ  N +   D  K  K+   V+  K+K L   I+    N   I+V   +   L 
Sbjct: 1213 KSLKTLQ-ENKSPLDDLLKKMKKENFVYSTKLKQLFDHIQDDMKNELHIVVFSQWIGFLK 1271

Query: 83   RLQKA----------FPQGRTLDKDPCTIQEWN--EGKI--------------------- 109
             +QK           +    T ++   T+  +N  +GK+                     
Sbjct: 1272 IIQKLLTLHNIPNKIYDGSLTYEERKTTLLWFNIQKGKVYQPGIGFTKPSSPIPVENVSG 1331

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    + +    LWW+     Q  ER+      + G  + V +Y 
Sbjct: 1332 KVLLCSLKAGGVGLNLTVS-SKVYLMDLWWNPAIEDQAFERV-----HRIGQLKDVSIYK 1385

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
             + + T++E +LQ  ++K    + +L
Sbjct: 1386 FVLEKTVEERILQIHQSKQYTANQIL 1411


>gi|164660548|ref|XP_001731397.1| hypothetical protein MGL_1580 [Malassezia globosa CBS 7966]
 gi|159105297|gb|EDP44183.1| hypothetical protein MGL_1580 [Malassezia globosa CBS 7966]
          Length = 999

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
           H  K+  L+ ++ +  A+   +++       L  L           +      + D    
Sbjct: 618 HSGKMVLLDKLLARLKADNHRVLIFSQMVHMLDILSDYLSLRGYVHQRLDGTVSSDTRKR 677

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N  + P         + G G+NL    + ++ F   W+ +   Q + R       
Sbjct: 678 AIDHFNAPQSPDFCFLLSTRAGGLGINL-ETADTVIIFDSDWNPQNDLQAMSR-----AH 731

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   K  + V+  + + T++E VL+R + K  ++  ++N +
Sbjct: 732 RLNSKFHINVFRFLTKGTVEEDVLERAKQKMGLEYAIINQM 772


>gi|73946637|ref|XP_860229.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 17 [Canis familiaris]
          Length = 1553

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEV---------- 51
             Y   Q +      G   +    A +     +QL     +    +H ++V          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEDVLPPKSVAVLG 1022

Query: 52   ------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL 94
                     K + L+ I+   +A    +++     S +  ++  F           G T 
Sbjct: 1023 MYNLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1082

Query: 95   DKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +D   + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q     
Sbjct: 1083 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA---- 1137

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1138 -QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1182


>gi|301117680|ref|XP_002906568.1| chromodomain-helicase-DNA-binding protein 1 [Phytophthora infestans
           T30-4]
 gi|262107917|gb|EEY65969.1| chromodomain-helicase-DNA-binding protein 1 [Phytophthora infestans
           T30-4]
          Length = 875

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 37/228 (16%)

Query: 7   FQRELYCDLQGENIEAFNSAS--------KTVKCLQL--ANGAVYYDEEKHWKEV----- 51
            QR  Y ++  +N E  N A+              QL  A    Y       +       
Sbjct: 297 MQRAYYKEVIAKNAEVLNRAARAQGNRVPLLNILPQLRKACNHPYLFPGAEPEPFVEGSH 356

Query: 52  ---HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
              +  K+  L  I+ +       +++       L  +Q              G    K+
Sbjct: 357 LYENSGKLFVLHQILPRLKQKGHRVLLFSQSPPFLDIIQDFLTLESFAYERIDGSVRGKE 416

Query: 98  P-CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I+ +  + +  +      + G GLNLQ   + ++F    ++ +   Q I R     
Sbjct: 417 RWQCIERFKKDPETFVFLISTRAGGLGLNLQ-SADTVIFADSDYNPQTDLQAIAR----- 470

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G  + + V   +  NT++E + +R   K  + D + N  ++  +
Sbjct: 471 AYRLGQTKPIHVIKFLCANTVEESIYRRSLKKMRMADRIRNLARRTNV 518


>gi|987661|dbj|BAA05142.1| transcriptional activator hSNF2a [Homo sapiens]
          Length = 1572

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AAHTVVIFDSDWNPHQDLQA-----QDRAH 1161

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|296228587|ref|XP_002759879.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Callithrix jacchus]
          Length = 862

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E      G+ ++  N  S+  KC    +    +D           H  E  
Sbjct: 259 MKDLDAFENET-----GKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 309

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 310 SGKLHLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 369

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 370 IKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 423

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 424 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 460


>gi|299751451|ref|XP_001830276.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
 gi|298409380|gb|EAU91423.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
          Length = 1032

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +   GLNL    N +     WW      Q ++R+      + G K+ V VY L
Sbjct: 910 VMLISLKAGALGLNLTV-ANHVYLMDPWWQEGIESQAVDRVN-----RIGQKKPVHVYQL 963

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           IA+NT++  VL+    K  +     + +K     
Sbjct: 964 IAENTVESKVLEIQDRKKQLVKQAFSGIKSRETQ 997


>gi|156059716|ref|XP_001595781.1| hypothetical protein SS1G_03871 [Sclerotinia sclerotiorum 1980]
 gi|154701657|gb|EDO01396.1| hypothetical protein SS1G_03871 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2189

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKD 97
                K + LE+++   +A    +++   F   L  ++                  TL+K 
Sbjct: 1171 DASSKFQLLEIMLPKLQARGHRVLIFSQFLKQLDLVEDFLNGLELPFQRLDGTVSTLEKQ 1230

Query: 98   PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N    K+        + G G+NL    + ++     ++  +  Q + R     
Sbjct: 1231 KR-IDAFNAPNSKLFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQDIQALSR----- 1283

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K+ V V+ L+ + + +E ++Q  R K  +   L+ ++
Sbjct: 1284 AHRIGQKKKVLVFQLVTKGSAEEQIVQVGRKKMALDQALIESI 1326


>gi|256078496|ref|XP_002575531.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|238660772|emb|CAZ31764.1| chromodomain helicase DNA binding protein, putative [Schistosoma
           mansoni]
          Length = 1825

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQEWN-EGKIPL-L 112
           K+    +++       L  +               G    +     +  +N EG      
Sbjct: 802 KSKGHRVLIFSQMVRMLDLIADYLSLRGWGFQRLDGSIRGEVRKQALDHFNCEGSTDFCF 861

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY  + 
Sbjct: 862 LLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQTKQVSVYRFVT 915

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + +++E +++    K  +  L++  +    I
Sbjct: 916 RESVEEKIIESATRKMVLDHLVIQRMDSAGI 946


>gi|242000110|ref|XP_002434698.1| chromodomain helicase DNA binding protein, putative [Ixodes
            scapularis]
 gi|215498028|gb|EEC07522.1| chromodomain helicase DNA binding protein, putative [Ixodes
            scapularis]
          Length = 1882

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
            K     +++       L  ++          +    G T  +    I  +N    P    
Sbjct: 1045 KETGHRVLIFSQMTKMLDIMEDFLEAEGYKYERIDGGITGSQRQEAIDRFNAPNAPQFCF 1104

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + 
Sbjct: 1105 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 1158

Query: 173  QNTIDELVLQRLRTKSTI 190
            + +++E + Q  + K  +
Sbjct: 1159 RASVEERITQVAKKKMML 1176


>gi|170594229|ref|XP_001901866.1| BRM protein [Brugia malayi]
 gi|158590810|gb|EDP29425.1| BRM protein, putative [Brugia malayi]
          Length = 1412

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------ 94
            D           K + L+ ++ K  A+   I++     S L  + + +   R        
Sbjct: 892  DVSGKDLYRVSGKFELLDRVLPKLKASGHRILMFCQMTS-LMTIMEDYLNYREFKYLRLD 950

Query: 95   -----DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 D+    ++ +N    +  +      + G GLNLQ   + ++ F   W+  +  Q 
Sbjct: 951  GSTKPDERGQLLELYNAPNSEYFIFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA 1009

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   R  + G  R V V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 1010 -----QDRAHRIGQSREVRVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 1056


>gi|297797399|ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312419|gb|EFH42843.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF--------- 88
           V  D+ +   +    K+  +  +++        +++       L  +Q +          
Sbjct: 725 VDTDDFQTKNDSISCKLSFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLR 784

Query: 89  PQGRTLDKDP-CTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T   D   T++E+ EG + P+        G GL L    + ++     W+     Q
Sbjct: 785 IDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQ 843

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++R       + G  + V VY L+   T++E + ++   K  +
Sbjct: 844 SVDR-----AYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGL 882


>gi|221485219|gb|EEE23509.1| hypothetical protein TGGT1_105260 [Toxoplasma gondii GT1]
          Length = 1244

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDPCTIQEWN-EGKIPLLFAH 115
                +IV  H  + L  +++             GRT  DK    ++E+       +    
Sbjct: 959  GGMKVIVFAHHRAVLDYIEEFLQAEMKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLS 1018

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQN 174
              +CGHGLNL   G  +VF  L+W   +  Q  +R       + G +  +V ++YLIA+ 
Sbjct: 1019 ITACGHGLNLTAAG-TVVFAELYWVPGQMIQAEDR-----SHRIGTEFSSVQIHYLIAEG 1072

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE V + L+ K  +    L+  +++
Sbjct: 1073 TLDETVFRILQRKWRLMTSTLDGEQQQ 1099


>gi|237842313|ref|XP_002370454.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211968118|gb|EEB03314.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|221502587|gb|EEE28307.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAF---------PQGRT-LDKDPCTIQEWN-EGKIPLLFAH 115
                +IV  H  + L  +++             GRT  DK    ++E+       +    
Sbjct: 946  GGMKVIVFAHHRAVLDYIEEFLQAEAKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLS 1005

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQN 174
              +CGHGLNL   G  +VF  L+W   +  Q  +R       + G +  +V ++YLIA+ 
Sbjct: 1006 ITACGHGLNLTAAG-TVVFAELYWVPGQMIQAEDR-----SHRIGTEFSSVQIHYLIAEG 1059

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE V + L+ K  +    L+  +++
Sbjct: 1060 TLDETVFRILQRKWRLMTSTLDGEQQQ 1086


>gi|260942529|ref|XP_002615563.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
 gi|238850853|gb|EEQ40317.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
          Length = 819

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 641 GGEWR--SSTKIEALVEELYRLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQG 698

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D           + +      + G  LNL    + +     WW+     Q ++
Sbjct: 699 SMSPQQRDRTIKHFMENTNVEIFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 757

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+ +    +N
Sbjct: 758 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMIHATIN 799


>gi|209882890|ref|XP_002142880.1| SNF2 family helicase [Cryptosporidium muris RN66]
 gi|209558486|gb|EEA08531.1| SNF2 family helicase, putative [Cryptosporidium muris RN66]
          Length = 1313

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 83/218 (38%), Gaps = 28/218 (12%)

Query: 3   QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y + +++     D+    I+  + ++  ++  ++ N    + +E   +     K+    
Sbjct: 749 VYGQIKQKAVHSMDISSGKIQYRSVSNTIMQLRKIVNHPYLFVDEYFARNDDIFKVSCKF 808

Query: 61  VIIEKA------NAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQE 103
            I+++           +++       L  +   F   R            + +    +  
Sbjct: 809 EILDRMIPKLVYFKHKVLIFCQMTQ-LMDILGDFLDYRDISYYRLDGTMNIQERKEKMDI 867

Query: 104 WNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G GLNLQ   + ++ F   W+  +  Q       +R  + G 
Sbjct: 868 FNDPDSNTFVFMLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QSRAHRMGQ 921

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           K  V V+ L++ + ++ELVL+R + K  I   ++ A K
Sbjct: 922 KNEVRVFRLVSISGVEELVLKRAQKKLDIDQKIIQAGK 959


>gi|170034569|ref|XP_001845146.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
 gi|167875927|gb|EDS39310.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
          Length = 5423

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2492 KANGHRVLIFSQMVRCLDILEDYLIYRKYPFERIDGRIRGNLRQAAIDRYSKPDSDRFVF 2551

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2552 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 2605

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2606 RNTYEREMFDKASMKLGLDKAILQSM 2631


>gi|146416597|ref|XP_001484268.1| hypothetical protein PGUG_03649 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1117

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 27/170 (15%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------------------AFPQGR 92
             K+  L+ +++  ++     ++       L  L+K                        
Sbjct: 666 SGKMLVLKGLLQLWQSQGHRTLLFCQTKQMLDILEKLLVNLTRISDGTEYFNYMRMDGST 725

Query: 93  TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + K    +  +N      +        G G+NL  G + ++ +   W+     Q  ER 
Sbjct: 726 PISKRQGLVDMFNNNTNYDVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARERA 784

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 785 W-----RLGQKRDIVIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 829


>gi|115334572|dbj|BAF33276.1| chromodomain helicase DNA binding protein 1 [Eudromia elegans]
          Length = 301

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + +V F   W+ +   Q   R    
Sbjct: 34  RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR---- 88

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
              + G K+ V +Y L+ + +++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 89  -AHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 141


>gi|156052062|ref|XP_001591992.1| hypothetical protein SS1G_07439 [Sclerotinia sclerotiorum 1980]
 gi|154705216|gb|EDO04955.1| hypothetical protein SS1G_07439 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1863

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCT 100
              K++ L  I++ +      ++V       L  L         + A   G+T + K    
Sbjct: 1291 SNKVRILCQILDASKAVGDKVLVFSQTLVTLDFLEDMCKEQGRKYARLDGKTAMGKRQAI 1350

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N   + L      + G GLNL YG N +V F        +  + E   + R  + G
Sbjct: 1351 VKDFNSNNLELYLISTNAGGLGLNL-YGANRVVIFDF-----RYNPINEEQAIGRAYRIG 1404

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K+ VFVY L+A  T +  +  +   K+ +   +++
Sbjct: 1405 QKKHVFVYRLMAAGTFENSIQNKAVFKTQLASRVVD 1440


>gi|109504572|ref|XP_341481.3| PREDICTED: RAD26L hypothetical protein isoform 2 [Rattus
           norvegicus]
 gi|109505337|ref|XP_001058999.1| PREDICTED: similar to putative repair and recombination helicase
           RAD26L isoform 1 [Rattus norvegicus]
          Length = 1533

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + +   +++       L  LQ+             G T  ++    
Sbjct: 505 SGKMKVLDQLLNHFRKHRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 564

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q I+R       + 
Sbjct: 565 VKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPANDLQAIDR-----AYRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 619 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLH 650


>gi|224013540|ref|XP_002296434.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968786|gb|EED87130.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1089

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 24/157 (15%)

Query: 55  KIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCT 100
           K+  L  +IE          +I+  +F + L  ++ +             G   +     
Sbjct: 713 KLIVLSSLIESIREHHPTDKVIITSNFTTALTVVENSILRKKNLPFIRLDGSVDNASRQP 772

Query: 101 I-QEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           I   +N   +           + G GLNL  G N L+     W+    QQ++ R+     
Sbjct: 773 IVDSFNNNSVNHSFAFTLSSKAGGCGLNL-IGANRLIMVDADWNPATDQQVMARV----- 826

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + G K+  ++Y +    T++E++ QR   K  +  L
Sbjct: 827 YRQGQKKPCYIYRMFTTGTVEEVIFQRQTQKGNLAKL 863


>gi|242775674|ref|XP_002478688.1| DNA excision repair protein Rad16, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722307|gb|EED21725.1| DNA excision repair protein Rad16, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 949

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL++A      LD      Q
Sbjct: 773 TSSTKIEMLVYDLYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGSMTPAQ 832

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             N          + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 833 RQNSIDHFMKNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 887

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + + +
Sbjct: 888 -HRIGQRRPCVITRLCIEDSVESRMVALQEKKANMINGTINKDQGDAL 934


>gi|297802844|ref|XP_002869306.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315142|gb|EFH45565.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDK-----DPC 99
              K++ L+ ++ K       +++   F   L   Q     K++   R   K        
Sbjct: 524 ASGKLQLLDKMMVKLKEQGHRVLIYSQFQHTLDLFQDYCSFKSWKYERIDGKVGGAERQA 583

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N              + G G+NL    + ++ +   W+     Q + R       
Sbjct: 584 SIDRFNAENSNRFCFLLTTRAGGIGINL-ATADTVIIYDSDWNPHADLQAMAR-----AH 637

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G    V +Y LI + T++E +++  + K  ++ L++
Sbjct: 638 RLGQTNKVMIYRLIHRATVEERMVEITKKKMLLEHLVV 675


>gi|194899382|ref|XP_001979239.1| GG24840 [Drosophila erecta]
 gi|190650942|gb|EDV48197.1| GG24840 [Drosophila erecta]
          Length = 932

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 52  HDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--RTLD--------KD 97
              K++     LE ++   N   IIV   + S L  ++K        TLD          
Sbjct: 755 PSAKLQLIINKLEELLTGTNDK-IIVTSQWVSYLTIIRKRLQDLSWETLDFNGQLSAKDR 813

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +Q++N      +L     + G GLNL    ++L+   L W+ +  +Q  +RI     
Sbjct: 814 ELVLQDFNTNNDKRVLLLSLTAGGVGLNLNVANHMLI-VDLHWNPQLERQAQDRI----- 867

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  +  F+Y  + Q+T+++ +      K  I  
Sbjct: 868 YRYGQTKPTFIYRYMCQDTVEQRIKSLQDYKLNIAK 903


>gi|195354288|ref|XP_002043630.1| GM15785 [Drosophila sechellia]
 gi|194127798|gb|EDW49841.1| GM15785 [Drosophila sechellia]
          Length = 1921

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  A    +++       L  L+          +    G T       I 
Sbjct: 992  KLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAID 1051

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1052 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1105

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1106 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1135


>gi|115334540|dbj|BAF33260.1| chromodomain helicase DNA binding protein 1 [Struthio camelus]
          Length = 301

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + +V F   W+ +   Q   R    
Sbjct: 31  RNQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR---- 85

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
              + G K+ V +Y L+ + +++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 86  -AHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 138


>gi|194391058|dbj|BAG60647.1| unnamed protein product [Homo sapiens]
          Length = 434

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 195 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 246

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 247 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 306

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 307 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRVGQ 360

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 361 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 396


>gi|68468463|ref|XP_721791.1| hypothetical protein CaO19.1720 [Candida albicans SC5314]
 gi|68468704|ref|XP_721671.1| hypothetical protein CaO19.9288 [Candida albicans SC5314]
 gi|46443600|gb|EAL02881.1| hypothetical protein CaO19.9288 [Candida albicans SC5314]
 gi|46443729|gb|EAL03009.1| hypothetical protein CaO19.1720 [Candida albicans SC5314]
          Length = 864

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 75/190 (39%), Gaps = 28/190 (14%)

Query: 28  KTVKCLQLANG-AVYYD----EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
           K ++   + N   +YY+    ++      +  K + L  ++    ++   +++   F   
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQAEVIR-NSAKFQVLNQLLPPLLSSGHKVLIFAQFTKV 639

Query: 81  LARLQK------------AFPQGRTLD--KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           L  L+                 G T    +D    Q  N  K  +  +   + G G+NL 
Sbjct: 640 LDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGLGINL- 698

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++     W+ +   Q I+R+      + G    V ++  + +++I+E+++ R  +
Sbjct: 699 VAADTVILMDNDWNPQMDLQAIDRV-----HRIGQINPVKIFRFVIKDSIEEVLISRSGS 753

Query: 187 KSTIQDLLLN 196
           K  ++ L++ 
Sbjct: 754 KRFLERLVIQ 763


>gi|52545542|emb|CAH56404.1| hypothetical protein [Homo sapiens]
          Length = 1059

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 397 DGSSLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 456

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 457 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 512

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 513 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 550


>gi|194760843|ref|XP_001962642.1| GF14337 [Drosophila ananassae]
 gi|190616339|gb|EDV31863.1| GF14337 [Drosophila ananassae]
          Length = 1891

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 820 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 879

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 880 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 938

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 939 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 986


>gi|114558330|ref|XP_001157925.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           6 [Pan troglodytes]
          Length = 791

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 345

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 406 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 459

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 460 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|7243213|dbj|BAA92654.1| KIAA1416 protein [Homo sapiens]
          Length = 1967

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 42/233 (18%)

Query: 2   KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWK 49
           K Y    ++   +    G      N  +  ++  +  N     +           E H  
Sbjct: 454 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 513

Query: 50  EVHDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLAR-----LQKAFPQGR 92
           E  D +++A+        +I+K      A    +++       L       +Q+ +P  R
Sbjct: 514 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 573

Query: 93  TLDK-----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 574 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDL 632

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G  ++V +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 633 QAQARC-----HRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 680


>gi|121713600|ref|XP_001274411.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus clavatus NRRL 1]
 gi|119402564|gb|EAW12985.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus clavatus NRRL 1]
          Length = 657

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 25/156 (16%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNS------DLARLQK----AFPQGRTLDKDP 98
           +  K  AL+ +++   +     +I+  +F        DL  + +    AF   R   +  
Sbjct: 508 NSGKFIALQKLLKHYVEVENTKVIIFSNFEQALNLCEDLVMIMQGTSPAFEYLRLDGRTT 567

Query: 99  CTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++       N+    +      + G GLNL    ++++F    W+ +  +Q      
Sbjct: 568 SPWRKLMVYLFQNDPSYMIFLLSIRAAGEGLNLT-SSSVVIFLDEDWNPQVMKQA----- 621

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            +R  + G  R V +Y L +  T++E + QRL  K+
Sbjct: 622 ESRAHRIGQSRPVRIYKLRSSGTVEEQMSQRLAKKA 657


>gi|254566309|ref|XP_002490265.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|238030061|emb|CAY67984.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|328350658|emb|CCA37058.1| hypothetical protein PP7435_Chr1-0923 [Pichia pastoris CBS 7435]
          Length = 816

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 44  EEKHWKEVHDEKIKAL-EVIIEKANAA---PIIVAYHFNSDLARLQKAFPQG-------- 91
               W+     KI+AL E +    +       IV   F S L  ++    +         
Sbjct: 637 MGGEWR--SSTKIEALVEELFHLRSDRVTIKSIVFSQFTSMLDLVEWRLKRAGFETVKLQ 694

Query: 92  ---RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L ++           + +      + G  LNL     + +    WW+     Q  
Sbjct: 695 GSMSPLQRESTIKHFMETPSVEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQSG 753

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 754 DRV-----HRIGQHRPVKITRFCIEDSIESRIIELQDKKANMIHATIN 796


>gi|224126629|ref|XP_002329602.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222870311|gb|EEF07442.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 148

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 72  IVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCG 120
           IV   + S L  L+            F       +   T++E+NE  +  +L     + G
Sbjct: 3   IVFSQWTSFLDLLEIPLKRRGIGFLRFDGKLAQKQRERTLKEFNETREKMVLLMSLKAGG 62

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N +     WW+    +Q I RI      + G KR VFV   I ++T++E +
Sbjct: 63  VGLNLTAASN-VFLMDPWWNPAVEEQAIMRI-----HRIGQKRTVFVRRFIVESTVEERL 116

Query: 181 LQRLRTKS 188
            Q    K 
Sbjct: 117 QQVQAKKQ 124


>gi|154338886|ref|XP_001565665.1| helicase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062717|emb|CAM39160.1| putative helicase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 974

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
               K++ L+ ++ +  A     ++  +F + L  L+          +         +  
Sbjct: 498 DPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAVCQLRGHSYERLDGSCNRVERE 557

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N       L      + G G+ L  G + ++ F            ++R    R 
Sbjct: 558 LAMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFD-----AHFNPQLDRQAADRA 611

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 612 HRIGQTRVVRVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 655


>gi|302813768|ref|XP_002988569.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
 gi|300143676|gb|EFJ10365.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
          Length = 601

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLF 113
           K+    +++       L  L+    +            +  D+    I    EG   +  
Sbjct: 380 KSRGHRVLIFSQMTKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITFSREG--FVFL 437

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 438 LSTRAGGLGINLT-SADTAIIYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATA 491

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           ++++  +L+   +K  ++ L++N
Sbjct: 492 HSVECRMLKVANSKLQLETLVIN 514


>gi|302665600|ref|XP_003024409.1| hypothetical protein TRV_01372 [Trichophyton verrucosum HKI 0517]
 gi|291188462|gb|EFE43798.1| hypothetical protein TRV_01372 [Trichophyton verrucosum HKI 0517]
          Length = 974

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  N       IV   F S L     RL +A      LD     +Q
Sbjct: 798 TSSTKIEMLVFDLCQLRNKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 857

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 858 RQRSIDYFMKNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 912

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 913 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 959


>gi|134055452|emb|CAK43967.1| unnamed protein product [Aspergillus niger]
          Length = 1670

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTI 101
             K + LE+++ K       +++   F  +L  ++                    +   TI
Sbjct: 960  AKFQLLELMLPKLKNRGHRVLIFSQFLENLDIIEDFLEGVGLTYLRLDGRMSSLEKQKTI 1019

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N  + P         S G G+NL    + ++     ++  +  Q + R       + 
Sbjct: 1020 DAYNAEESPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRI 1073

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K  V V+ L+ + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1074 GQKNKVLVFQLMTRASAEEKIMQIGKKKMVLDHVLIDRMVSE 1115


>gi|156544560|ref|XP_001602612.1| PREDICTED: similar to chromodomain helicase DNA binding protein
           [Nasonia vitripennis]
          Length = 1837

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 68  AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQEWNEGKIP--LLFAH 115
              +++       L  L     ++ FP  R             +  +N            
Sbjct: 770 GHRVLIFSQMVRMLDILSEYLQKRHFPFQRLDGSIKGELRKQALDHFNAPGSQDFCFLLS 829

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ +   Q   R       + G K  V +Y L+ +++
Sbjct: 830 TRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKNQVNIYRLVTKSS 883

Query: 176 IDELVLQRLRTKSTIQDLLLNAL 198
           ++E +++R + K  +  L++  +
Sbjct: 884 VEEEIVERAKQKMVLDHLVIQRM 906


>gi|154291059|ref|XP_001546116.1| hypothetical protein BC1G_15417 [Botryotinia fuckeliana B05.10]
 gi|150847107|gb|EDN22300.1| hypothetical protein BC1G_15417 [Botryotinia fuckeliana B05.10]
          Length = 1110

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------- 86
             +   + K    +   K+ AL  ++ K   N   +++   F+  L  L+           
Sbjct: 869  CIKSFDVKKNAWMDSGKVSALVELVTKYKENGDRVLIFSQFSLVLDILESVLNTSMITYT 928

Query: 87   AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +D+    I+ + +   I        + G G+NL Y  N ++ F   ++ ++  
Sbjct: 929  RIDGATKIDERQSLIERFRDDTDITAFLLTTKAGGTGINLMY-ANKVIIFDGSFNPQDDV 987

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            Q        R  + G  R V V  L+ + TI+E + +  R+K
Sbjct: 988  QA-----ENRAHRVGQTRDVEVVRLVTRGTIEEAIWKMGRSK 1024


>gi|299754940|ref|XP_001828301.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
 gi|298410995|gb|EAU93652.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
          Length = 836

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 53  DEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPC 99
             K + +  ++ +        ++   F + L  L +                 T  +   
Sbjct: 663 SSKFQVVLGLLRRHYRKNEKTLIFSSFVTVLDVLSECLDAHGIGHVRYDGSMSTKARQEA 722

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 + +  ++     S G GLN+    N+++    WW+    +Q I R       + 
Sbjct: 723 LDSIVQDDESMVMLVSIKSGGTGLNITSCNNVVIL-DPWWNPYVEEQAISR-----AHRL 776

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G ++ V VY + A NT+++ + +    K  I D L +     TIH
Sbjct: 777 GQEKEVNVYRITAPNTVEDKICKTQHRKFNIIDPLQDRCAATTIH 821


>gi|321461806|gb|EFX72834.1| hypothetical protein DAPPUDRAFT_215757 [Daphnia pulex]
          Length = 1614

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85   QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            +     G T   D   + + +N+      L      + G GLNLQ   + ++ F   W+ 
Sbjct: 1078 KYLRLDGTTKADDRGDLLKRFNDKSSDYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 1136

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +  Q        R  + G    V V  L+   +++E +L   R K  +   ++ A K
Sbjct: 1137 HQDLQA-----QDRAHRIGQTNEVRVLRLMTVGSVEERILAAARYKLNMDQKVIQAGK 1189


>gi|301623501|ref|XP_002941055.1| PREDICTED: probable global transcription activator SNF2L2 [Xenopus
            (Silurana) tropicalis]
          Length = 1559

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D  +
Sbjct: 1035 TSGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAS 1094

Query: 101  I-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   P  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1095 LLKRFNEEGSPFFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1148

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1149 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1188


>gi|118104167|ref|XP_425043.2| PREDICTED: similar to RP11-346B7.2 [Gallus gallus]
          Length = 1132

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 19/149 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K++ L+ ++   + N   +++       L  L++             G T  +D    
Sbjct: 509 SGKMRVLQQLLNHFRKNKDKVLLFSFSTKLLDVLEQYCIASGLDFRRLDGSTKSEDRIRI 568

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N   +I +      + G GLN   G N+++ F   W+     Q I+R       + 
Sbjct: 569 VREFNRVPEINICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAIDR-----AYRI 622

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           G  + V V+ LI+  T++E++  R   K 
Sbjct: 623 GQCKDVKVFRLISLGTVEEMMYLRQVYKQ 651


>gi|319411618|emb|CBQ73662.1| probable RAD16-nucleotide excision repair protein [Sporisorium
            reilianum]
          Length = 1070

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 21/159 (13%)

Query: 52   HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
               KI+AL      +  +      +V   F + L  +     +              +  
Sbjct: 897  SSTKIEALVEELTQLRSEDKTIKSLVFSQFVNFLDLIAFRLQRAGFQICRLEGNMSPEAR 956

Query: 98   PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              TI+ +     + +      + G  LNL    + +     WW+     Q ++RI     
Sbjct: 957  NRTIKHFMENPGVTVFLVSLKAGGVALNLTE-ASRVYLMDPWWNPSVEVQAMDRI----- 1010

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R + V  ++ +N+I+  +++    KS + +  +
Sbjct: 1011 HRLGQHRPIIVKRMVIENSIESRIIELQNKKSAMIEAAI 1049


>gi|158296578|ref|XP_316961.4| AGAP008482-PA [Anopheles gambiae str. PEST]
 gi|157014777|gb|EAA12280.5| AGAP008482-PA [Anopheles gambiae str. PEST]
          Length = 4793

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDK-----DPCTIQEWNEGKIP--LL 112
            +AN   +++       L  L+     K +P  R   +         I  +++      + 
Sbjct: 2188 RANGHRVLIFSQMVRCLDILEDYLMYKKYPFERIDGRIRGNLRQAAIDRYSKPDSDRFVF 2247

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2248 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 2301

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2302 RNTYEREMFDKASLKLGLDKAVLQSM 2327


>gi|39974235|ref|XP_368508.1| hypothetical protein MGG_00736 [Magnaporthe oryzae 70-15]
 gi|145018332|gb|EDK02611.1| hypothetical protein MGG_00736 [Magnaporthe oryzae 70-15]
          Length = 1685

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG--KIPLL 112
            K     +++   F   L  ++        L +              I E+N    ++   
Sbjct: 1165 KEKGHRVLIFSQFLDQLDIIEDFLAGLGFLYQRLDGTMSSLEKQKRIDEFNAPSSELFAF 1224

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +  Q + R       + G    V  + L+ 
Sbjct: 1225 LLSTRAGGVGINL-ATADTVIIMDPDFNPHQDLQALSR-----AHRIGQMNKVLCFQLMT 1278

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + +++E ++Q  R K  +  +L+ A+  E
Sbjct: 1279 KGSVEEKIMQIGRKKMALDHVLIEAMDDE 1307


>gi|224081014|ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222855713|gb|EEE93260.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1058

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 21/180 (11%)

Query: 26  ASKTVKC-LQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEKA--NAAPIIVAYHFNSDL 81
           A+   K  + LA+ A   D +   K  +   KI  +  +++        +++       L
Sbjct: 695 AAVAEKLAMHLADVADRTDTDFQEKHDNISCKISFILSLLDNLIPEGHNVLIFSQTRKML 754

Query: 82  ARLQKAF---------PQGRTLDKDP-CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
             +Q++            G T   D    + ++ EG   P+        G GL L    +
Sbjct: 755 NLIQESLVSNGYEFIRIDGTTKATDRTKIVSDFQEGNGAPIFLLTSQVGGLGLTLTK-AD 813

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++     W+     Q ++R       + G  + V VY L+   +++E + ++   K  +
Sbjct: 814 RVIVVDPAWNPSTDNQSVDR-----AYRIGQMKDVVVYRLMTCGSVEEKIYRKQIFKGGL 868


>gi|221057846|ref|XP_002261431.1| SNF2 family protein [Plasmodium knowlesi strain H]
 gi|194247436|emb|CAQ40836.1| SNF2 family protein, putative [Plasmodium knowlesi strain H]
          Length = 2872

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 69   APIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLLFAHP 116
              +++   F   L  L+     + +   R             I+E+N       +     
Sbjct: 1200 HKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLNDSIYFIYLIST 1259

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N ++ +   W+     Q I+R       + G KR V V+ L+ + T+
Sbjct: 1260 RAGGLGINLT-AANHVIMYDEDWNPFIDLQAIDR-----AHRIGQKREVNVWKLMTEWTV 1313

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +  R   K  +  L++ 
Sbjct: 1314 EERMAFRREQKLKLDKLVVQ 1333


>gi|326435151|gb|EGD80721.1| serine/threonine protein kinase [Salpingoeca sp. ATCC 50818]
          Length = 4337

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    I ++N       ++     +   G+NL +  N ++ F + W+     Q I    
Sbjct: 3848 EERTEKIAKFNSALSNAAIMIISHRAGRAGINL-HSANRVILFDVDWNPASDNQAI---- 3902

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             TR  + G K  V VY L+A+ T+++ + ++  TK  +   L++
Sbjct: 3903 -TRAHRYGQKLPVVVYRLVARGTLEQRIYEKQVTKEVLSQRLVD 3945


>gi|320580749|gb|EFW94971.1| SNF2 family DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 1485

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFN------------SDLARLQKAFPQGRTLDKDPCTIQE 103
           +  ++ I+E      +IV   F               +  L+          K       
Sbjct: 796 LTLIKDILETKPGEKVIVFSQFMVLFDILELFLRDHGIEYLRYDGSMNVEA-KSASVATF 854

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +    ++     +   GL L    ++++    +W+    +Q  +R+      +    R
Sbjct: 855 YQDPNKKVMLLSLKAGNVGLTLTCASHVIIL-EPFWNPFVEKQAQDRV-----HRISQVR 908

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V+V+ ++ +NT+++ +++    K  + +  L+   ++ +
Sbjct: 909 EVYVHRILIRNTVEDRIIELQAEKEKLVESALDPTARQQV 948


>gi|308274464|emb|CBX31063.1| hypothetical protein N47_E45750 [uncultured Desulfobacterium sp.]
          Length = 413

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QK 86
           C   AN     D++        E+I  L   ++      II+   + + L  +     + 
Sbjct: 108 CRMAANSTFLVDKQPPGYSSKLEEIDMLLENLKAEKDRKIILFSEWTTMLNLIEPVLEKH 167

Query: 87  AFPQGRTLDKDPC-----TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                R     P       I  + +     +F    +   GLNLQ   + ++   L W+ 
Sbjct: 168 KLDYVRLDGSVPQKMRLSLINRFQKDPECKVFISTNAGSTGLNLQ-AADTVINVDLPWNP 226

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +Q   RIG  R  + G KR V V+ ++ ++T++E +L+ L +K  +    L+
Sbjct: 227 AVLEQ---RIG--RAHRMGQKRPVQVFLMVTKDTLEESLLETLSSKHALFLAALD 276


>gi|302501310|ref|XP_003012647.1| hypothetical protein ARB_00897 [Arthroderma benhamiae CBS 112371]
 gi|291176207|gb|EFE32007.1| hypothetical protein ARB_00897 [Arthroderma benhamiae CBS 112371]
          Length = 828

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  N       IV   F S L     RL +A      LD     +Q
Sbjct: 652 TSSTKIEMLVFDLCQLRNRKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 711

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 712 RQRSIDYFMKNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 766

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 767 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 813


>gi|301092506|ref|XP_002997108.1| chromatin structure-remodeling complex subunit snf21-like protein
           [Phytophthora infestans T30-4]
 gi|262111604|gb|EEY69656.1| chromatin structure-remodeling complex subunit snf21-like protein
           [Phytophthora infestans T30-4]
          Length = 1309

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 27/193 (13%)

Query: 28  KTVKCLQL---ANGAVYYDEEKHWKEVH----DEKIKALEVIIEK--ANAAPIIVAYHFN 78
            +   +QL    N    +    +  +        K + L+ ++ K  A    +++     
Sbjct: 773 LSNVLMQLRKVCNHPYLFQTNGYQIDFDIVRSSGKFELLDRMLPKLKAAGHRVLMFSQMT 832

Query: 79  SDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQ 126
             +  L+  F                D+    +  +N    P  +      + G GLNL 
Sbjct: 833 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNASDSPFFIFLLSTRAGGLGLNL- 891

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++ F   W+     Q        R  + G K  V V+ L+  + ++E +L R   
Sbjct: 892 ATADTVIIFDSDWNPAMDAQA-----QDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATD 946

Query: 187 KSTIQDLLLNALK 199
           K  + +L++ A K
Sbjct: 947 KMNMNNLVVEAGK 959


>gi|242214113|ref|XP_002472881.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728002|gb|EED81905.1| predicted protein [Postia placenta Mad-698-R]
          Length = 799

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
              K+ AL   +++  +     IV   + S L  L+  F +              +    
Sbjct: 617 PSTKMLALVEHLQEWESTGDKTIVFSQWTSMLDLLETLFSRYGIRSLRYDGKMSREAREL 676

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++   G   ++       G GLNL    N L+   L W+     Q  +R+      +
Sbjct: 677 VLSQFRKSGGPKVILISTKCGGVGLNL-VSANRLINMDLGWNYASESQAYDRV-----HR 730

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G ++ VFV  L+ +NTI+E +L+   TK  + +  L
Sbjct: 731 LGQEKEVFVKRLVVRNTIEERMLKLQETKVGLAEAAL 767


>gi|158289757|ref|XP_311416.4| AGAP010699-PA [Anopheles gambiae str. PEST]
 gi|157018480|gb|EAA07021.4| AGAP010699-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
              K+  L+ ++ +  A  + +++   F + L  L         +    +G T + +   
Sbjct: 404 FSSKMIVLDKLLARLRARGSKVLIFSQFVTVLYLLMDYLDWREYEYCMLEGHTDIAERQE 463

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + E+N       +      + G G+NL    + ++F+ + ++ +   Q  +R       
Sbjct: 464 QMNEFNRPDSTKFVFLLSTRAGGLGINL-PAADTVIFYDMDFNPQMDFQAEDR-----AH 517

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G +R V V+ L+ + +IDEL+      K  + + ++
Sbjct: 518 RIGQQRKVHVFRLLVRGSIDELLYLHSERKRQLDEAVI 555


>gi|52545633|emb|CAH56377.1| hypothetical protein [Homo sapiens]
          Length = 1061

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 390 DGSSLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 449

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 450 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 505

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 506 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 543


>gi|149245518|ref|XP_001527236.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449630|gb|EDK43886.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1400

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSD---------LARLQKAFPQGRTL-DKDPC 99
               K + L+ ++ K  A+   +++ +              L  ++     G T  D+   
Sbjct: 909  TSGKFELLDRVLPKFKASGHRVLMFFQMTQIMDIMEDFLRLKDMKYMRLDGSTKADERQD 968

Query: 100  TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++E+N              + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 969  MLKEFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAH 1022

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V +  LI+ ++++E++L+R   K  I   ++ A K
Sbjct: 1023 RIGQKNEVRILRLISNDSVEEMILERAHQKLEIDGKVIQAGK 1064


>gi|74181165|dbj|BAE27845.1| unnamed protein product [Mus musculus]
          Length = 1510

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1059 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1118

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1119 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1173 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|312076547|ref|XP_003140910.1| SNF2 family domain-containing protein [Loa loa]
 gi|307763929|gb|EFO23163.1| SNF2 family domain-containing protein [Loa loa]
          Length = 926

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 29/207 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG--AVYYDEEKHWKEVHDEKIKALE 60
           +Y K + +   +    ++   +  + +  C +  +    +  +E      +   K K L+
Sbjct: 708 EYRKKKSDHVAE----DLAFLSDFAISQLCSKFTSTQKFILNEE----VALESGKFKELD 759

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNE-G 107
            ++         +++   F S +  L         Q     G T   +    I E+N   
Sbjct: 760 KLLPSIKEKGDKVLIFSQFTSVMDILEVYLKLRDHQYCRLDGSTPVMERQDVINEYNSSP 819

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +      + G G+NL    +I++   + ++    +Q   R       + G  + VFV
Sbjct: 820 DLFVFLLSTKAGGLGINLTAANHIILH-DIDFNPYNDKQAEGRC-----HRMGQTKDVFV 873

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             LI+ +T++E +L   + K  ++  +
Sbjct: 874 VRLISADTVEEEMLALAQKKLELEKEV 900


>gi|241953595|ref|XP_002419519.1| ISWI chromatin-remodeling complex ATPase, putative [Candida
           dubliniensis CD36]
 gi|223642859|emb|CAX43114.1| ISWI chromatin-remodeling complex ATPase, putative [Candida
           dubliniensis CD36]
          Length = 1054

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQL---ANGAVYYD--------EEK 46
             Q E Y  L  ++I+A N                +QL    N    +D           
Sbjct: 384 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 443

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLD 95
                +  K+  L+ +++K  A  + +++    +  L  L+              G T  
Sbjct: 444 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTSH 503

Query: 96  KDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D    I E+N       +      + G G+NL    +I++ +   W+ +   Q ++R  
Sbjct: 504 EDRIEAIDEYNAPNSDKFIFLLTTRAGGLGINLT-SADIVILYDSDWNPQADLQAMDR-- 560

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+ V V+  + +  I+E VL+R   K  +  L++ 
Sbjct: 561 ---AHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQ 601


>gi|207347991|gb|EDZ73985.1| YAL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 516

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------A 87
           Y      W +    KI AL+ +++         +++   F   L  L+            
Sbjct: 323 YQLHNDEWMQ--SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLR 380

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++     I ++ E K IP+      + G G+NL    N+++F       +    
Sbjct: 381 LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFD------QSFNP 434

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +R    R  + G  + V +  LI +++I+E + Q  + K  +   +    K + +
Sbjct: 435 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 491


>gi|146417920|ref|XP_001484927.1| hypothetical protein PGUG_02656 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1224

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQL---ANGAVYYDE----------EKHW 48
            Y +  +     +  E   A +       K +QL    N    ++E            + 
Sbjct: 721 LYQQMLKHNALFVGAEVGSAKSGIKGLNNKIMQLRKICNHPFVFEEVEDVLNPSRMTNNL 780

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS------DLARLQK----AFPQGRTLDK 96
                 K + L+ ++ K  A+   +++ +   S      D  RL+             + 
Sbjct: 781 IWRSSGKFELLDRVLPKFKASGHRVLLFFQMTSVMDIMEDFLRLRNMKYLRLDGATKAED 840

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    +         + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 841 RQEMLKLFNAPGSEYFCFLLSTRAGGLGLNLQ-SADTVIIFDTDWNPHQDLQA-----QD 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI   +++E++L+R   K  I   ++ A K
Sbjct: 895 RAHRIGQKNEVRILRLITNESVEEVILERAHQKLDIDGKVIQAGK 939


>gi|302803051|ref|XP_002983279.1| hypothetical protein SELMODRAFT_422676 [Selaginella moellendorffii]
 gi|300148964|gb|EFJ15621.1| hypothetical protein SELMODRAFT_422676 [Selaginella moellendorffii]
          Length = 3497

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ I+ K       +++       L  L         +     G T+  +  + I 
Sbjct: 1471 KLEMLDRILPKLKKSNHRVLLFSTMTRLLNVLEDYLTWKGYKYLRLDGHTMGSERGSLID 1530

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       L      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1531 RFNAPDSDAFLFLLSIRAGGIGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1584

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V V  L   NTI+E V      K  + +  + A
Sbjct: 1585 QKRDVLVLRLETVNTIEEQVRASAEHKLGVANQSITA 1621


>gi|300121395|emb|CBK21775.2| unnamed protein product [Blastocystis hominis]
          Length = 735

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 42/183 (22%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHF-----NSDLARLQKAFPQGRTLDKDPCT--- 100
             +  + ++ L  I         +    F       +  R+ + F +G  + +       
Sbjct: 534 ILIFSQWVEMLNDIGIALKREG-MRFVQFDGSLSKQERERILEEFERGNAVFEQEMDDSE 592

Query: 101 -----IQEWN---------------------EGKIP-LLFAHPASCGHGLNLQYGGNILV 133
                 ++W                      +G+ P ++     + G GLNL    N + 
Sbjct: 593 LMQEISEDWESTRKRGASTPIAAKKRQKVETDGEFPRIMLISLRAGGVGLNLT-SANTVF 651

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               WW+     Q I R+      + G KR V V+ LI +++I+E +++  + K  +   
Sbjct: 652 MCDPWWNEAVENQAINRVF-----RIGQKRKVKVFRLIIEDSIEEKIIKLQQKKEQLIQS 706

Query: 194 LLN 196
            L+
Sbjct: 707 TLD 709


>gi|328724512|ref|XP_001948282.2| PREDICTED: hypothetical protein LOC100164870 [Acyrthosiphon pisum]
          Length = 4192

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 23/158 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQ 102
            D+ +  L+      N   +++       L  ++              GR   +     I 
Sbjct: 1939 DKLLPKLKD-----NGHRVLIFSQMVRCLDIIEDYLVYRKYPFERLDGRIRGNLRQAAID 1993

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             + +      +      + G G+NL    + ++ +   W+ +   Q   R       + G
Sbjct: 1994 RFCKPDSDRFVFLLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIG 2047

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             ++ V VY L+ +NT +  +  +   K  +   +L ++
Sbjct: 2048 QQKMVKVYRLLCRNTYEREMFNKASLKLGLDKAILQSM 2085


>gi|320163536|gb|EFW40435.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1077

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 68   AAPIIVAY-HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
               I   Y ++ +DLAR Q+A             I         ++     + G GLNL 
Sbjct: 929  EKSIKAFYGNWTADLARQQQANANSTDKKSKHPLIT-----GSRVMLLSLLAGGVGLNLV 983

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               ++++     W+     Q  +R       + G    V V+ LI + T++E V      
Sbjct: 984  AANHVVIADGH-WNPALEDQACDR-----AYRVGQPLKVTVHRLICKGTVEERVAALQAK 1037

Query: 187  KSTIQDLLLNALKKETI 203
            K  +   ++ + +   +
Sbjct: 1038 KRALSKDIIQSARAGAV 1054


>gi|255719802|ref|XP_002556181.1| KLTH0H06952p [Lachancea thermotolerans]
 gi|238942147|emb|CAR30319.1| KLTH0H06952p [Lachancea thermotolerans]
          Length = 1359

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 22/161 (13%)

Query: 52   HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDK 96
              +KIK    I+      +    II+   F +    LQ             +        
Sbjct: 1181 PSQKIKQCLDIVRNVFANSRDEKIIIFSQFTTFFDLLQHFIRKELGVQYLRYDGSMDAQS 1240

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               TI+ +    +  LL     +   GL L    N ++    +W+    +Q ++R     
Sbjct: 1241 RAATIEGFYRNNERRLLLISMKAGNAGLTLTC-ANHVILVDPFWNPFVEEQAMDRC---- 1295

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +    R V V+ L+ ++++++ +L+  + K  + +  ++
Sbjct: 1296 -YRISQTREVQVHRLLIKDSVEDRILELQKKKRELVESAMD 1335


>gi|212530546|ref|XP_002145430.1| RSC complex subunit (Sth1), putative [Penicillium marneffei ATCC
            18224]
 gi|210074828|gb|EEA28915.1| RSC complex subunit (Sth1), putative [Penicillium marneffei ATCC
            18224]
          Length = 1430

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 65   KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KA    +++ +          D  R   L+     G T  D     ++ +N         
Sbjct: 884  KATGHRVLLFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDDRSELLKLFNAPNSDYFCF 943

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNLQ   + ++ +   W+  +  Q        R  + G K  V +  LI 
Sbjct: 944  LLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 997

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALK 199
             N+++E +L R + K  +   ++ A K
Sbjct: 998  SNSVEEKILGRAQFKLDMDGKVIQAGK 1024


>gi|149604225|ref|XP_001512827.1| PREDICTED: similar to chromatin remodeling factor CHROM1 isoform 1
            [Ornithorhynchus anatinus]
          Length = 2885

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|325190696|emb|CCA25192.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 835

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I+ +      + +L     +   G+NL +  N LV F + W+     Q +     
Sbjct: 667 RRSEYIERFTSSDNRVKVLLVSTRAGAEGINL-HAANRLVLFDVSWNPSYDHQSM----- 720

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V VY L++  T++ ++ ++ R K+++   L++  K
Sbjct: 721 CRSHRLGQSKTVHVYRLVSTGTMERMIYEQQRKKTSLSMALVDRSK 766


>gi|242010572|ref|XP_002426039.1| DNA repair and recombination protein RAD26, putative [Pediculus
           humanus corporis]
 gi|212510049|gb|EEB13301.1| DNA repair and recombination protein RAD26, putative [Pediculus
           humanus corporis]
          Length = 1206

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 19/154 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K+  +E +++  K     +++       L+ L+                  +      I 
Sbjct: 674 KMIVMETLLKIWKKQGHRVLIFTQSRKMLSILENFVLSQNYEYLKLDGTTNIGSRQPLIN 733

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++NE  K  +  +     G G+NL  G N +V +   W+     Q  ER       + G 
Sbjct: 734 KFNEEKKYYIFLSTTHVGGLGVNLT-GANRVVIYDPDWNPATDMQARERAW-----RIGQ 787

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +  V +Y L+   TI+E +  R   K  + + +L
Sbjct: 788 ENQVTIYRLVTSGTIEEKIYHRQIFKQFLTNKVL 821


>gi|110755099|ref|XP_396302.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Apis mellifera]
          Length = 830

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
           K+K L+ ++ K       +++   F   L  L++             G T   D   +  
Sbjct: 629 KLKILDELLPKLKEEGHRVLIFSQFTMILDILEEYLTIRGQTYLRLDGSTPVTDRQCLIN 688

Query: 104 W--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +  I +      + G G+NL     +++   + ++    +Q  +R       + G 
Sbjct: 689 QYMEDENIFIFLLSTKAGGLGINLTAADTVIIH-DIDFNPYNDKQAEDRC-----HRVGQ 742

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           KR+V +  L++++TI+E + +  + K  ++  +
Sbjct: 743 KRSVSIIRLLSEDTIEEGMYEIAQDKLHLEQQI 775


>gi|157107190|ref|XP_001649665.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108879646|gb|EAT43871.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 2002

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCT 100
              K+  L+ ++ +       +++       L  L +   +         G    +     
Sbjct: 883  SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELRKQA 942

Query: 101  IQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N EG           + G G+NL    + ++ F   W+ +   Q   R       +
Sbjct: 943  LDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHR 996

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 997  IGQKNQVNIYRLVTARSVEEDIVERAKKKMVLDHLVIQRM 1036


>gi|327352533|gb|EGE81390.1| DNA repair protein RAD16 [Ajellomyces dermatitidis ATCC 18188]
          Length = 983

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 807 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 866

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 867 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 921

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 922 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 968


>gi|254584336|ref|XP_002497736.1| ZYRO0F12320p [Zygosaccharomyces rouxii]
 gi|238940629|emb|CAR28803.1| ZYRO0F12320p [Zygosaccharomyces rouxii]
          Length = 983

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 43/226 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLAN-------------GAVYYDE 44
           + Q   Y  L  ++I+A N                +QL               G  Y  +
Sbjct: 305 EMQVHWYKSLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 364

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRT 93
           E      +  K+  L+ +++K     + +++    +  L  L+              G T
Sbjct: 365 EHLV--YNAGKMIVLDKLLKKMKEKGSRVLIFSQMSRLLDILEDYCYFRDYEYCRIDGST 422

Query: 94  LDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    I E+N+      +      + G G+NL    + +V +   W+ +   Q ++R
Sbjct: 423 AHEDRIEAIDEFNKPDSDKFVFLLTTRAGGLGINL-VTADTVVLYDSDWNPQADLQAMDR 481

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G K+ V VY  + ++ I+E V++R   K  +  L++ 
Sbjct: 482 -----AHRIGQKKQVHVYRFVTESAIEEKVIERAAQKLRLDQLVIQ 522


>gi|226289343|gb|EEH44855.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb18]
          Length = 899

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 723 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 782

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 783 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 837

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 838 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 884


>gi|295661927|ref|XP_002791518.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226280075|gb|EEH35641.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 910

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 734 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 793

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 794 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 848

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 849 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 895


>gi|225682156|gb|EEH20440.1| RING-11 protein [Paracoccidioides brasiliensis Pb03]
          Length = 841

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 665 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 724

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 725 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 779

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 780 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 826


>gi|114553052|ref|XP_525165.2| PREDICTED: chromodomain helicase DNA binding protein 5 [Pan
            troglodytes]
          Length = 1991

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR----LQKAFPQGRTLDK-- 96
            +         K+  L+ +++K       +++       L      L+    +   +D   
Sbjct: 1015 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLGEDFLEYEGYKYERIDGGI 1074

Query: 97   ----DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1075 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1130

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1131 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168


>gi|328705649|ref|XP_001947067.2| PREDICTED: hypothetical protein LOC100164965 [Acyrthosiphon pisum]
          Length = 2250

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------- 98
               K+  L  I+E++      +++       L  +++   + +   KD            
Sbjct: 1695 ASAKMSLLFAIVEESVRIGDRVLLFSQSLFTLDLIEEFLQRNKIPGKDEHWCRNCDYYRL 1754

Query: 99   ----------CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        I ++N    + L      +   G+NL  G N ++ F   W+     Q 
Sbjct: 1755 DGSTSASEREKLINDFNICNTVHLFLVSTRAGSLGINL-VGANRVIVFDASWNPCHDTQA 1813

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      R  + G ++  FVY L+  N +++ +  R   K  + D +++
Sbjct: 1814 V-----CRVYRYGQQKPCFVYRLVTDNCLEKKIYDRQINKQVMADRVVD 1857


>gi|167517477|ref|XP_001743079.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778178|gb|EDQ91793.1| predicted protein [Monosiga brevicollis MX1]
          Length = 751

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------- 53
           + Y       Y +L+  +  ++ N  +  ++  +  N     D+    +   D       
Sbjct: 408 QYYKTILTRNYTELRDIKKSKSSNLLNIVMELKKCCNHTNLIDDGLDNQGGPDPLTRLLR 467

Query: 54  --EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC- 99
              K+  L+ ++ +       +++       L  L         Q     G T  +    
Sbjct: 468 GSGKLILLDKLLTRLKESGHRVLIFSQMVVMLDVLAYYLALRQYQYQRLDGNTKHEQRKR 527

Query: 100 TIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N EG           + G G+NL    + ++ +   W+ +   Q   R       
Sbjct: 528 AINHFNAEGSTDFAFLLSTRAGGLGVNL-ATADTVIIYDSDWNPQNDLQAQAR-----AH 581

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G  + V +Y L++++T++E +LQR + K  +  L++  +
Sbjct: 582 RIGQTKQVNIYRLVSKSTVEEDILQRAKQKMVLDHLVIQRM 622


>gi|149604227|ref|XP_001512847.1| PREDICTED: similar to chromatin remodeling factor CHROM1 isoform 2
            [Ornithorhynchus anatinus]
          Length = 2876

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|47215569|emb|CAG10740.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3070

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL-DKDPCTIQEWNEGKIP--LLF 113
           A    ++V       L  L+    Q         GR   ++    I  + +      +  
Sbjct: 612 AGGHKVLVFSQMVRCLDILEDYLIQRRYSYERIDGRVRGNQRQAAIDRFCKPDSDRFVFL 671

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 672 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 725

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 726 NSYEREMFDKASLKLGLDKAVLQDINRKG 754


>gi|311245835|ref|XP_001925950.2| PREDICTED: probable global transcription activator SNF2L2 [Sus
            scrofa]
          Length = 1515

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 973  ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1032

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1033 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1086

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1087 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1126


>gi|158290917|ref|XP_312449.4| AGAP002490-PA [Anopheles gambiae str. PEST]
 gi|157018127|gb|EAA08205.4| AGAP002490-PA [Anopheles gambiae str. PEST]
          Length = 881

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 45/184 (24%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYH-------FNSDLARLQKAFPQGR---------- 92
           H  K+  L  I+++  A    ++V              L+ L +   +            
Sbjct: 416 HSGKLVVLMEILKECEAIGDKLLVFSQSLYSLDVIEHFLSLLDENLQKDEDERDEQLSKY 475

Query: 93  -----------------TLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNIL 132
                            ++D      + +N+    +  L      + G G+NL    N +
Sbjct: 476 PGSWSLGLDYFRLDGSTSIDNRNDACKVFNDESNTRARLFLISTRAGGLGINL-VAANRV 534

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F + W+     Q I R+      + G  +  ++Y  IA  T++E + +R  TK  I  
Sbjct: 535 VIFDVSWNPSHDIQSIFRV-----YRFGQSKPCYIYRFIAMGTMEEKIYERQVTKQAISK 589

Query: 193 LLLN 196
            +++
Sbjct: 590 RVID 593


>gi|193848582|gb|ACF22767.1| SNF2P [Brachypodium distachyon]
          Length = 721

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 32/175 (18%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFP 89
           Y+E +H  +    K+  L++I++K +     +++       L  LQ          +   
Sbjct: 232 YEEGEHLVQ-ASGKLIVLDLILKKLHRLGHRVLLFAQMTHTLDILQDFLELRNYTYERLD 290

Query: 90  QGRTLDKDPCTIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                ++    I+++             N     +      + G GLNL  G + ++F+ 
Sbjct: 291 GSVRAEERFAAIRKFSSQPTKGVARDDDNPSGAFVFMISTRAGGVGLNL-IGADTVIFYE 349

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  + 
Sbjct: 350 QDWNPQADKQALQR-----AHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLS 399


>gi|149245558|ref|XP_001527256.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449650|gb|EDK43906.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 936

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK--IPLL 112
            +     ++   F   +  +Q                   ++    I ++N+      + 
Sbjct: 677 SSQNHKCLIFSQFTKVMDLIQDWLHFQNIKACRLDGLTPQEERAKQISQFNDSNSSYKVF 736

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL  G + ++ F   W+ +   Q I+R+      + G  + V +Y  + 
Sbjct: 737 LLSTRAGGLGINLT-GADTVILFDNDWNPQMDLQAIDRV-----HRIGQTKPVKIYRFVV 790

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           +++I+E+++ +  +K  ++ L++ 
Sbjct: 791 RDSIEEILIAKSSSKRFLEKLVIQ 814


>gi|157107192|ref|XP_001649666.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108879647|gb|EAT43872.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 2001

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCT 100
              K+  L+ ++ +       +++       L  L +   +         G    +     
Sbjct: 883  SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELRKQA 942

Query: 101  IQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N EG           + G G+NL    + ++ F   W+ +   Q   R       +
Sbjct: 943  LDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHR 996

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 997  IGQKNQVNIYRLVTARSVEEDIVERAKKKMVLDHLVIQRM 1036


>gi|301122081|ref|XP_002908767.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
           infestans T30-4]
 gi|262099529|gb|EEY57581.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
           infestans T30-4]
          Length = 1788

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEW--NEGKIPLLFA 114
               +++       L  ++              G     D    +  +   E K  ++  
Sbjct: 777 GGHKVLIFSQMVRVLDIIEDYLRYCGYLYERLDGNIRGNDRQAAVDRFVKPEYKRFVMLL 836

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + ++ F   W+ +   Q   R       + G   +V +Y LI + 
Sbjct: 837 STKAGGLGLNLT-AADTVIIFDSDWNPQNDLQAQAR-----AHRIGQTHSVKIYRLITRK 890

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           T +  +  +   K  +   +L  +++E
Sbjct: 891 TYEMHMFHKASLKLGLDKAVLTHMRRE 917


>gi|302755712|ref|XP_002961280.1| hypothetical protein SELMODRAFT_403041 [Selaginella moellendorffii]
 gi|300172219|gb|EFJ38819.1| hypothetical protein SELMODRAFT_403041 [Selaginella moellendorffii]
          Length = 3598

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEKANA--APIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ I+ K       +++       L  L         +     G T+  +  + I 
Sbjct: 1455 KLEMLDRILPKLKKSNHRVLLFSTMTRLLNVLEDYLTWKGYKYLRLDGHTMGSERGSLID 1514

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       L      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1515 RFNAPDSDAFLFLLSIRAGGIGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1568

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             KR V V  L   NTI+E V      K  + +  + A
Sbjct: 1569 QKRDVLVLRLETVNTIEEQVRASAEHKLGVANQSITA 1605


>gi|73946679|ref|XP_860926.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 36 [Canis familiaris]
          Length = 1596

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1072 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1131

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1132 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1185

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1186 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1225


>gi|299756086|ref|XP_001829080.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
 gi|298411516|gb|EAU92715.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
          Length = 1494

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 57/143 (39%), Gaps = 19/143 (13%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPC----TIQEWNEGKIPLL 112
            +A+    +V   + + L +++ A             T+ ++         +++ G   +L
Sbjct: 1106 EADIVKTVVFSQWTTMLDKVEDALEVAGIRYDRLDGTMKREERIKAMDALKFDPG-CEVL 1164

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL      +     +W+     Q ++RI      + G  R V    LI 
Sbjct: 1165 LVSLKAGGVGLNLT-AAQRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVQTVKLII 1218

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
            + +I+  +L+  + K+ + ++ L
Sbjct: 1219 EGSIEARLLEVQKKKTELANMTL 1241


>gi|239607541|gb|EEQ84528.1| DNA repair protein RAD16 [Ajellomyces dermatitidis ER-3]
          Length = 948

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 772 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 831

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 832 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 886

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 887 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 933


>gi|118083490|ref|XP_416560.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 885

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
             H  E    K+  L+ ++         +++       L  LQ              G  
Sbjct: 329 GDHIVE-ASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSV 387

Query: 94  LDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++    I+ + +  I +      + G G+NL    + ++F    ++ +   Q I R  
Sbjct: 388 RGEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFTDSDFNPQNDLQAIAR-- 444

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 445 ---AHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 486


>gi|114558328|ref|XP_001157874.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           5 [Pan troglodytes]
          Length = 877

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 345

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 406 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 459

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 460 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|327283577|ref|XP_003226517.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Anolis
            carolinensis]
          Length = 1918

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP--LLFA 114
                +++       L  L+          +    G T +     I  +N    P      
Sbjct: 1060 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAPQFCFLL 1119

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1120 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1173

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1174 SVEERITQVAKKKMML 1189


>gi|297835980|ref|XP_002885872.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331712|gb|EFH62131.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1721

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 35/231 (15%)

Query: 2    KQYHK--FQR---ELYCDLQGENIEAFNSASKTVKCL------QLANGAVYYDEEKHWKE 50
            KQY+K   +R   +L   ++G  +   N   +  KC       + A+     D   + K 
Sbjct: 869  KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKL 928

Query: 51   ----VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLD 95
                +   K+  L+ ++ +       +++       L  L +             G T  
Sbjct: 929  DKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKA 988

Query: 96   K-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     +  +N              + G G+NL    + +V F   W+ +   Q + R  
Sbjct: 989  ELRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQNDLQAMSR-- 1045

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1046 ---AHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGR 1093


>gi|328716042|ref|XP_003245819.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
            [Acyrthosiphon pisum]
          Length = 2002

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            +  +  I+   N   +++       L  L+          +      T ++    I  +N
Sbjct: 1053 LSKMLRILHDTN-HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGSITGNQRQEAIDRFN 1111

Query: 106  EG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                +  +      + G G+NL    + ++ +   W+     Q       +R  + G   
Sbjct: 1112 APGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQAN 1165

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTI 190
             V +Y  + +N+++E V Q  + K  +
Sbjct: 1166 KVMIYRFVTRNSVEERVTQVAKRKMML 1192


>gi|71064092|gb|AAZ22501.1| Sth1p [Saccharomyces cerevisiae]
          Length = 1359

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|301788384|ref|XP_002929608.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Ailuropoda melanoleuca]
          Length = 886

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E+      + ++  N  S+  KC    +    +D           H  E  
Sbjct: 285 MKDLDAFENEM-----AKKVKLQNVLSQLRKC---VDHPYLFDGVEPEPFEIGDHLIE-A 335

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 336 SGKLYLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 395

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  + +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 396 IKNFGQQPVFIFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 449

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++V V  LI ++T++E+V ++  +K  + + ++ 
Sbjct: 450 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 485


>gi|256269545|gb|EEU04829.1| Sth1p [Saccharomyces cerevisiae JAY291]
          Length = 1359

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|261200215|ref|XP_002626508.1| DNA repair protein RAD16 [Ajellomyces dermatitidis SLH14081]
 gi|239593580|gb|EEQ76161.1| DNA repair protein RAD16 [Ajellomyces dermatitidis SLH14081]
          Length = 948

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIE---KANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +   K      IV   F S L     RL++       LD      +
Sbjct: 772 TSSTKIEMLVYDLFKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 831

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 832 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 886

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 887 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 933


>gi|145350214|ref|XP_001419509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579741|gb|ABO97802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 688

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 58  ALEVIIEKANAA-PIIVAYHFNSDLAR---LQK-------AFPQGRTLDKDPCTIQEWNE 106
            LE + E+ +    ++V   +++ LA    + K              +D     ++ +N 
Sbjct: 440 MLEALKERGDPTERVVVVSGYSASLATAEDICKKLNVTTSRLDGTVAVDLRTSIVKNFNS 499

Query: 107 GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G+   ++     + G GLNL  G N L+   + W+    +Q + RI      + G  + V
Sbjct: 500 GQGGQVMLLSVVAGGAGLNL-VGANRLILMDVSWNPAHDRQAMGRIW-----RDGQTKPV 553

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +Y L++  T+++ V +R   K  +++ +
Sbjct: 554 TIYRLVSAGTVEQKVFERQLGKEVLKNTV 582


>gi|47228067|emb|CAF97696.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2331

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K+  L+ ++ +  A    +++       L  L+      R L          +     I 
Sbjct: 1228 KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAID 1287

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +++      +      + G G+NL    +  V F   W+ +   Q   R       + G
Sbjct: 1288 RFSKPDSDRFVFLLCTRAGGLGINLT-AADTCVIFDSDWNPQNDLQAQARC-----HRIG 1341

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1342 QSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1379


>gi|308475524|ref|XP_003099980.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
 gi|308266032|gb|EFP09985.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
          Length = 1429

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 35/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVH----- 52
            Y   ++ L  D +  +  A + ++  V   +L N    ++        HWK        
Sbjct: 740 IYRHMKKGLLLDAKMSS-GARSLSNTIVHLRKLCNHPFLFETIEDSCRTHWKVNEVSGKD 798

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTL-DK 96
                 K++ L+ I+ K  A    +++ +     +   +              G T  D+
Sbjct: 799 LMRVAGKLELLDRILPKLKATGHRVLMFFQMTKMMDIFEDYLHFRNHTYLRLDGSTKPDE 858

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       L      + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 859 RGELLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QD 912

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 913 RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 957


>gi|218197912|gb|EEC80339.1| hypothetical protein OsI_22408 [Oryza sativa Indica Group]
          Length = 4284

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT--------IQ 102
            K++ L+ ++ K  A    +++       L  ++    + + + L  D  T        I 
Sbjct: 1306 KLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQERGALID 1365

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N       +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1366 KFNNPNSQAFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1419

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L    T++E V      K  + +  + A
Sbjct: 1420 QKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1456


>gi|154270293|ref|XP_001536002.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410016|gb|EDN05404.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 884

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 31/211 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKIKALEV 61
              +R+  C L    IE   S          A  A + ++        E    KI+AL  
Sbjct: 671 QAIERQHKCPLCRAEIEDCKSLV--------APSADFGEDTNEIDIDPETTSSKIQALLK 722

Query: 62  IIEKANAAP---IIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
           I+     AP    +V   + S L  ++               +  +  +D       N+ 
Sbjct: 723 ILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARIDGKMSSAKRDAAMNALSNDS 782

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L A    C  GLNL    N ++    WW      Q ++R+      + G KR   +
Sbjct: 783 NCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV-----YRLGQKRPTTI 836

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + L+ +N+I++ VL + + K   +D  ++ +
Sbjct: 837 WRLVMENSIEDRVLDKQKEKHRKRDDRMSRV 867


>gi|312220832|emb|CBY00773.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1533

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 21/155 (13%)

Query: 51   VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
                KI+ L   + +  +       IV   F S L     RL++A      LD      +
Sbjct: 872  TSSTKIEMLVYDLYKLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMSPAQ 931

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +I  +     + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 932  RQKSIDHFMTNPDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 986

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G KR   +  L  +++++  ++     K+ +
Sbjct: 987  -HRIGQKRPCVITRLCIEDSVESRMVALQEKKAAM 1020


>gi|302206285|gb|ADL10627.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
          Length = 920

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 16/150 (10%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT--LDKDPCTIQEWN---- 105
            K++ +  + ++A      I++  +F   L RL   F Q     ++ D   I+       
Sbjct: 723 AKVERIIELADEAASEGRNILIFSYFRDVLDRLHLEFDQRSVGIINGDVAPIKRQELVDT 782

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L A   + G GLN+Q   ++++            Q I R       + G  +
Sbjct: 783 LGANGQDILLAQIGAGGVGLNIQK-ASVVILTEAQVKPALEDQAIAR-----AHRMGQTK 836

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V VY ++   TIDE +L+    K  + D 
Sbjct: 837 PVSVYRILGDETIDERLLEINAQKRKLFDE 866


>gi|300858572|ref|YP_003783555.1| hypothetical protein cpfrc_01155 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686026|gb|ADK28948.1| hypothetical protein cpfrc_01155 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330842|gb|ADL21036.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276527|gb|ADO26426.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 920

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 16/150 (10%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT--LDKDPCTIQEWN---- 105
            K++ +  + ++A      I++  +F   L RL   F Q     ++ D   I+       
Sbjct: 723 AKVERIIELADEAASEGRNILIFSYFRDVLDRLHLEFDQRSVGIINGDVAPIKRQELVDT 782

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L A   + G GLN+Q   ++++            Q I R       + G  +
Sbjct: 783 LGANGQDILLAQIGAGGVGLNIQK-ASVVILTEAQVKPALEDQAIAR-----AHRMGQTK 836

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V VY ++   TIDE +L+    K  + D 
Sbjct: 837 PVSVYRILGDETIDERLLEINAQKRKLFDE 866


>gi|134078079|emb|CAK40162.1| unnamed protein product [Aspergillus niger]
          Length = 1166

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 24/161 (14%)

Query: 52   HDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCT 100
               K+ AL   +         +V   F S L  +     +                   T
Sbjct: 986  TSAKVHALLAHLARVPANTKSVVFSQFTSFLDLISPQLTRAGIHHVRLDGTMPHKARAET 1045

Query: 101  IQEWNEGKIP-------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            + ++N  +         +L     + G GLNL    N+ +    WW      Q I+R+  
Sbjct: 1046 LAQFNRHRHSTAPPPPTVLLISLRAGGVGLNLTAASNVFMM-DPWWSFAIEAQAIDRV-- 1102

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  R V V   + +++I+  +L+    K  I   L
Sbjct: 1103 ---HRMGQTRDVQVTRFVVKDSIEGRMLRVQERKMNIAGSL 1140


>gi|198432555|ref|XP_002131918.1| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            [Ciona intestinalis]
          Length = 1904

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----QGRTLDK-- 96
            E         K+  L+ ++ K       +++       L  L+        +   +D   
Sbjct: 993  EGTELTKTSGKLIVLQKMLRKLKDRGNRVLIFSQMTRMLDILEDFLEYEGYKYERIDGSI 1052

Query: 97   ----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +I  +N              + G G+NL    + +  +   W+     Q    
Sbjct: 1053 TGSIRQESIDRFNAPNSDHFAFLLSTRAGGLGINL-ATADTVFIYDSDWNPHNDIQA--- 1108

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + +N+++E V +  + K  +
Sbjct: 1109 --FSRAHRIGQTNKVMIYRFVTKNSVEERVAEVAKRKMML 1146


>gi|195354154|ref|XP_002043565.1| GM19418 [Drosophila sechellia]
 gi|194127733|gb|EDW49776.1| GM19418 [Drosophila sechellia]
          Length = 882

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 20/137 (14%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEG--KIPLLF 113
           +   +++    +  L  + + F +G              D     I  +N+   +  +  
Sbjct: 602 DNHRVLLFSQMSKMLN-ILEHFLEGEGYQYDRIDGAIRGDLRQKAIDRFNDPGSEQFVFL 660

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+     Q       +R  + G K+ V +Y  +  
Sbjct: 661 LSTRAGGLGINL-ATADTVIIFDSDWNPHNDVQA-----FSRAHRMGQKKKVMIYRFVTH 714

Query: 174 NTIDELVLQRLRTKSTI 190
           N+++E ++Q  + K  +
Sbjct: 715 NSVEERIMQVAKRKMML 731


>gi|193787140|dbj|BAG52346.1| unnamed protein product [Homo sapiens]
          Length = 979

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 531 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 590

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 591 TGGLRQEAIDRFNAPGAQQFCFLLSTRASGLGINL-ATADTVIIYDSDWNPHNDIQA--- 646

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 647 --FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 684


>gi|114558326|ref|XP_001158033.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           8 [Pan troglodytes]
          Length = 896

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 345

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 406 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 459

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 460 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|172764|gb|AAA35120.1| STH1 protein [Saccharomyces cerevisiae]
          Length = 1352

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|238880168|gb|EEQ43806.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1097

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 27/168 (16%)

Query: 47   HWKEVHDEKIKA---------LEVIIEKANAAPIIVAYHFNSDLARLQK---------AF 88
             WK   ++ + +         L+ II+      +++   F   L  L++         A 
Sbjct: 928  KWKLGDEKFLDSGKVIELGKILQQIID-NKGEKVLIFSLFTQVLDILERVLSIFNYKFAR 986

Query: 89   PQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              G T  ++    I  +N + KI +      + G G+NL    N ++ F   ++  E +Q
Sbjct: 987  LDGNTPVQERQDLIDLFNQDDKIHIFLISTKAGGVGINL-VAANHVIMFDQSFNPHEDKQ 1045

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +R       + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 1046 AEDR-----AHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 1088


>gi|190406337|gb|EDV09604.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1359

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|115389076|ref|XP_001212043.1| DNA repair protein RAD16 [Aspergillus terreus NIH2624]
 gi|114194439|gb|EAU36139.1| DNA repair protein RAD16 [Aspergillus terreus NIH2624]
          Length = 963

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L      +  K      IV   F S L     RL++A      LD      Q
Sbjct: 787 TSSTKIEMLVYELYKLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQ 846

Query: 103 EWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                        + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 847 RQKSIDYFMKNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 901

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 902 -HRIGQRRPCVITRLCIEDSVESRIVLLQEKKANLINGTINKDQGEAL 948


>gi|6322065|ref|NP_012140.1| Sth1p [Saccharomyces cerevisiae S288c]
 gi|417373|sp|P32597|STH1_YEAST RecName: Full=Nuclear protein STH1/NPS1; AltName:
           Full=ATP-dependent helicase STH1; AltName:
           Full=Chromatin structure-remodeling complex protein
           STH1; AltName: Full=SNF2 homolog
 gi|218449|dbj|BAA01446.1| nuclear protein [Saccharomyces cerevisiae]
 gi|599991|emb|CAA86866.1| nuclear protein [Saccharomyces cerevisiae]
 gi|285812528|tpg|DAA08427.1| TPA: Sth1p [Saccharomyces cerevisiae S288c]
          Length = 1359

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|62472261|ref|NP_001014591.1| Mi-2, isoform B [Drosophila melanogaster]
 gi|61678453|gb|AAX52739.1| Mi-2, isoform B [Drosophila melanogaster]
          Length = 1983

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  A    +++       L  L+          +    G T       I 
Sbjct: 1054 KLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAID 1113

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1114 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1167

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1168 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1197


>gi|134110664|ref|XP_776159.1| hypothetical protein CNBD2060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258827|gb|EAL21512.1| hypothetical protein CNBD2060 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1123

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 44  EEKHWKEVH-DEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR-------LQKAFPQGRT 93
           EE+H + ++   K++ L++++ K  A    I++   F   L R       ++     G T
Sbjct: 39  EEQHRQLLNASGKLQFLKLLLPKLIARGHRILLFSQFKMALDRNFLYGENVKHLRLDGDT 98

Query: 94  LD-KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +    + ++N       +      + G G+NL    + ++     ++  + QQ I R
Sbjct: 99  QQAQRQKYMDQFNAPNSDYHIFLLTTRAGGVGINL-ASADTVILHDPDFNPHQDQQAIAR 157

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                  + G ++ V V+ L+ + +++E ++ + + K  +  L++  + KET
Sbjct: 158 -----AYRYGQEKRVLVFKLMIKGSVEETIINKGKRKMVLDHLVVQQMGKET 204


>gi|67528132|ref|XP_661876.1| hypothetical protein AN4272.2 [Aspergillus nidulans FGSC A4]
 gi|40739750|gb|EAA58940.1| hypothetical protein AN4272.2 [Aspergillus nidulans FGSC A4]
 gi|259481113|tpe|CBF74347.1| TPA: DNA excision repair protein Rad16, putative (AFU_orthologue;
           AFUA_7G03820) [Aspergillus nidulans FGSC A4]
          Length = 849

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 72  IVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCG 120
           IV   F S L     RL++A      LD      Q         N   + +      + G
Sbjct: 698 IVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMSPAQRQKSIDYFMNNVNVEVFLVSLKAGG 757

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             LNL     + +    WW+     Q  +R       + G +R   +  L  +++++  +
Sbjct: 758 VALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVESRI 811

Query: 181 LQRLRTKSTIQDLLLNALKKETI 203
           +     K+ + +  +N  + E +
Sbjct: 812 VMLQEKKANMINGTINKDQGEAL 834


>gi|258576005|ref|XP_002542184.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902450|gb|EEP76851.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 960

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           ++   ++V  H    L  LQ  F              + +     + ++N + +  +   
Sbjct: 616 SHGDKVLVFSHSVRLLKMLQLLFNHTSYNVSYLDGAMSYEDRAKVVNDFNADPRQFVFLI 675

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 676 STKAGGVGLNIT-SANKVVVVDPNWNPSHDLQA-----QDRAYRIGQLRDVEVFRLVSAG 729

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 730 TIEEIVYARQIYKQQQAN 747


>gi|325090620|gb|EGC43930.1| DNA repair protein RAD16 [Ajellomyces capsulatus H88]
          Length = 848

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +  +       IV   F S L     RL++       LD      +
Sbjct: 672 TSSTKIEMLVYDLFKLRSKKRTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 731

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 732 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 786

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 787 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 833


>gi|240278465|gb|EER41971.1| DNA repair protein RAD16 [Ajellomyces capsulatus H143]
          Length = 848

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +  +       IV   F S L     RL++       LD      +
Sbjct: 672 TSSTKIEMLVYDLFKLRSKKRTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 731

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 732 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 786

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 787 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 833


>gi|260948588|ref|XP_002618591.1| hypothetical protein CLUG_02050 [Clavispora lusitaniae ATCC 42720]
 gi|238848463|gb|EEQ37927.1| hypothetical protein CLUG_02050 [Clavispora lusitaniae ATCC 42720]
          Length = 1186

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  + K    +  +N  +   +        G G+NL  G + ++ F   W+     
Sbjct: 801 RMDGSTPIGKRQQLVDTFNANEYYHVFLLTTKVGGLGVNLT-GADRVIIFDPDWNPSTDI 859

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           Q  ER       + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 860 QARERAW-----RLGQKRDITIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 910


>gi|225556044|gb|EEH04334.1| DNA repair protein RAD16 [Ajellomyces capsulatus G186AR]
          Length = 848

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +  +       IV   F S L     RL++       LD      +
Sbjct: 672 TSSTKIEMLVYDLFKLRSKKRTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 731

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 732 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 786

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 787 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 833


>gi|224001656|ref|XP_002290500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973922|gb|EED92252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1653

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 94   LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            L K    +  +N    P  +      + G GLNL    + ++ F   W+     Q     
Sbjct: 1134 LRKREKRMYMFNAPDSPYFIFLLSTRAGGLGLNL-ATADTVIIFDSDWNPMMDLQA---- 1188

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G ++ V V+ +I Q+ ++E +L R   K  + +L++ A K
Sbjct: 1189 -QDRAHRIGQRKDVRVFRIITQSPVEEKILSRATEKLHMNELVVEAGK 1235


>gi|242818381|ref|XP_002487106.1| RSC complex subunit (Sth1), putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713571|gb|EED12995.1| RSC complex subunit (Sth1), putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1420

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 65   KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KA    +++ +          D  R   L+     G T  D     ++ +N         
Sbjct: 877  KATGHRVLLFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDDRSELLKLFNAPNSDYFCF 936

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNLQ   + ++ +   W+  +  Q        R  + G K  V +  LI 
Sbjct: 937  LLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 990

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALK 199
             N+++E +L R + K  +   ++ A K
Sbjct: 991  SNSVEEKILGRAQFKLDMDGKVIQAGK 1017


>gi|209877158|ref|XP_002140021.1| chromatin remodelling complex SNF2H [Cryptosporidium muris RN66]
 gi|209555627|gb|EEA05672.1| chromatin remodelling complex SNF2H, putative [Cryptosporidium
           muris RN66]
          Length = 1288

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD---------EEKHWKEVH 52
           K Y +        L           +  ++  ++ N    +D         E  H  E  
Sbjct: 473 KIYSELLTRNLDILNNVTYNKTQMLNLLMQLRKVCNHPYLFDGVEPGPPYVEGFHMVE-A 531

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT----- 100
             K+  L  ++ K  +  + +++       L  +        +P  R     P       
Sbjct: 532 SGKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWCGYPYCRIDGSTPGIERQER 591

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N+      +      + G G+NL    ++++ F   ++ +   Q ++R       +
Sbjct: 592 IDLFNKSGSDKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQMDLQAMDR-----AHR 645

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+ V VY  + + +++E +++R   K  +  L++ 
Sbjct: 646 IGQKKTVTVYRFVTEKSVEERIVERAAKKLKLDSLIIQ 683


>gi|170031684|ref|XP_001843714.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
 gi|167870885|gb|EDS34268.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
          Length = 2039

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCT 100
              K+  L+ ++ +       +++       L  L +   +         G    +     
Sbjct: 912  SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELRKQA 971

Query: 101  IQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N EG           + G G+NL    + ++ F   W+ +   Q   R       +
Sbjct: 972  LDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHR 1025

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 1026 IGQKNQVNIYRLVTAKSVEEDIVERAKKKMVLDHLVIQRM 1065


>gi|154275942|ref|XP_001538816.1| DNA repair protein RAD16 [Ajellomyces capsulatus NAm1]
 gi|150413889|gb|EDN09254.1| DNA repair protein RAD16 [Ajellomyces capsulatus NAm1]
          Length = 927

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLD------K 96
               KI+ L   + +  +       IV   F S L     RL++       LD      +
Sbjct: 751 TSSTKIEMLVYDLFKLRSKKRTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQ 810

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ + N   + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 811 RQKSIEHFMNNVDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 865

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ +    +N  + E +
Sbjct: 866 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMIRGTINKDQSEAL 912


>gi|24667055|ref|NP_649154.2| Mi-2, isoform A [Drosophila melanogaster]
 gi|281366478|ref|NP_001163476.1| Mi-2, isoform C [Drosophila melanogaster]
 gi|13124018|sp|O97159|CHDM_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein Mi-2 homolog;
            AltName: Full=ATP-dependent helicase Mi-2; Short=dMi-2
 gi|23093096|gb|AAF49099.2| Mi-2, isoform A [Drosophila melanogaster]
 gi|272455249|gb|ACZ94747.1| Mi-2, isoform C [Drosophila melanogaster]
          Length = 1982

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  A    +++       L  L+          +    G T       I 
Sbjct: 1053 KLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAID 1112

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1113 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1166

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1167 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1196


>gi|296805505|ref|XP_002843577.1| DNA repair protein RAD16 [Arthroderma otae CBS 113480]
 gi|238844879|gb|EEQ34541.1| DNA repair protein RAD16 [Arthroderma otae CBS 113480]
          Length = 867

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  +       IV   F S L     RL +A      LD     +Q
Sbjct: 691 TSSTKIEMLVYDLYQLRDKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 750

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N+    +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 751 RQRSIDHFMNDIDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 805

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 806 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKGQSEAL 852


>gi|156547006|ref|XP_001600490.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 843

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT- 100
             K K L+ ++ +   +   +++   F   L  L++             G+T   +    
Sbjct: 648 SGKFKKLDELLPQLKNDGHRVLIFSQFTMILDILEEYLTIRGHRYLRLDGQTPVMERQDL 707

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+ E  +I +      + G G+NL     +++   + ++    +Q  +R       + 
Sbjct: 708 IDEYTEDSEIFIFLLSTRAGGLGINLTSADTVIIH-DIDFNPYNDKQAGDRC-----HRV 761

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G  + V +  L+ ++TI+E + +  + K  ++  +
Sbjct: 762 GQTKPVRIIRLLGKDTIEEGMYKITQEKLNLEQKI 796


>gi|119193650|ref|XP_001247431.1| hypothetical protein CIMG_01202 [Coccidioides immitis RS]
          Length = 1034

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
              KI+ L  I+++       IV   F S L +++            +  G   D    +
Sbjct: 783 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLKSAGIGYARYDGGMRNDLREAS 842

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++        +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 843 LEKLRHSSSTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 896

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 897 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 934


>gi|302769197|ref|XP_002968018.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
 gi|300164756|gb|EFJ31365.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
          Length = 1234

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + QR  Y  L  ++I+A N+  +  + L +A                  G  Y+  E   
Sbjct: 438 QMQRNYYKALLQKDIDAINTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTGEHLV 497

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           +      +    +   K  ++ +++       L  L+               G + +   
Sbjct: 498 ENSGKMVLLDKLLPKLKQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDRE 557

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N    +  +      + G G+NL    +I++ +   W+ +   Q        R 
Sbjct: 558 FAIEAFNREGSEKFIFLLSTRAGGLGINL-ATADIVILYDSDWNPQVDLQA-----QDRA 611

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    Q TI+E V++R   K  +  L++ 
Sbjct: 612 HRIGQKKEVQVFRFCTQYTIEEKVIERAYKKLALDALVIQ 651


>gi|301096537|ref|XP_002897365.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107056|gb|EEY65108.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 612

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 96  KDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           K    IQ +     P+  L     +   G+NL +  N LV F + W+     Q +     
Sbjct: 429 KRMEYIQRFTSPDSPVKLLLVSTRAGAEGINL-HAANRLVLFDVSWNPSNDHQSM----- 482

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R  + G  + V VY L++  T++  + ++   K  +   ++++ ++
Sbjct: 483 CRSHRIGQAKTVHVYRLVSTGTMERRIYEQQMKKVDLSTSVVDSHER 529


>gi|255079182|ref|XP_002503171.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518437|gb|ACO64429.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1026

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--KIPLLFAH 115
            + +++       L  L+      R            D     I  +N    +  +    
Sbjct: 484 GSRVLIFSQMTRLLDILEDYLLFRRYKYCRIDGNTDGDTREDMIDSYNAPGSEKFVFLLS 543

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V +   W+ +   Q ++R       + G  + V V+      +
Sbjct: 544 TRAGGLGINLTT-ADTVVIYDSDWNPQMDLQAMDR-----AHRIGQTKEVSVFRFCTDGS 597

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E V+++   K  +  L++ 
Sbjct: 598 VEEKVIEKAYKKLALDALVIQ 618


>gi|221330583|ref|NP_001137761.1| kismet, isoform C [Drosophila melanogaster]
 gi|220901895|gb|ACL82968.1| kismet, isoform C [Drosophila melanogaster]
          Length = 5517

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2363 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2422

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2423 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2476

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2477 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2506


>gi|213406245|ref|XP_002173894.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212001941|gb|EEB07601.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 845

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKI-PLLFAHP 116
             P + A  F   L  L+      +           +D     I ++ E +   +     
Sbjct: 709 GEPWMEATKFTQMLDILELVLKNLKVEFLRIDGSTQVDSRQDLIDQFYENENYKVFLLST 768

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    N+++ + + ++  +  Q  +R       + G K+ V+V+ L+ ++T+
Sbjct: 769 KAGGFGINL-ACANVVILYDVSYNPFDDLQAEDR-----AHRVGQKKDVYVHRLVVKDTV 822

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +E +L+   TK  + + +  A+
Sbjct: 823 EENILKLANTKVALDETISGAV 844


>gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
 gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
          Length = 5605

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2472 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2531

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2532 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2585

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2586 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2615


>gi|195470194|ref|XP_002087393.1| GE16349 [Drosophila yakuba]
 gi|194173494|gb|EDW87105.1| GE16349 [Drosophila yakuba]
          Length = 5330

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2364 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2423

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2424 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2477

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2478 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2507


>gi|195436658|ref|XP_002066274.1| GK18181 [Drosophila willistoni]
 gi|194162359|gb|EDW77260.1| GK18181 [Drosophila willistoni]
          Length = 5689

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2538 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2597

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2598 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2651

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2652 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2681


>gi|194853302|ref|XP_001968138.1| GG24671 [Drosophila erecta]
 gi|190660005|gb|EDV57197.1| GG24671 [Drosophila erecta]
          Length = 5335

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2371 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2430

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2431 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2484

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2485 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2514


>gi|194766405|ref|XP_001965315.1| GF24504 [Drosophila ananassae]
 gi|190617925|gb|EDV33449.1| GF24504 [Drosophila ananassae]
          Length = 3217

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2355 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2414

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2415 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2468

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2469 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2498


>gi|168052769|ref|XP_001778812.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162669818|gb|EDQ56398.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2126

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQG 91
            DE          K + LE ++ +       +++       L  L+              G
Sbjct: 1147 DELFRLLVTASGKFQLLEKLLPRLKEGGHRVLLFSQMTGMLDILEDFLTHLNFKFCRIDG 1206

Query: 92   RTL-DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL--WW------D 140
             TL  +    I ++N     I +      + G G+NL      L +  +  +W       
Sbjct: 1207 STLASERQKQIADFNSTNSDIFIFLISTRAGGLGINLISLMLKLCWEGIRKFWLVLHFAS 1266

Query: 141  LEE----HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L          ++     R  + G +  V VY LI + +++E +++R R K  +++L+++
Sbjct: 1267 LSATDPDFNPFVDLQAQARAHRIGQENVVLVYQLITKCSVEEKIIERSRQKLAMENLVMS 1326

Query: 197  ALKKET 202
            + +K+T
Sbjct: 1327 SSEKDT 1332


>gi|115903652|ref|XP_794091.2| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
 gi|115972944|ref|XP_001188944.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
          Length = 1736

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-----IQ 102
            K + L+ I+ K       I++     + +  L+     + F   R             +Q
Sbjct: 1144 KFELLDRILPKLKALGHRILLFCQMTTLMTILEDFFVYRGFKYLRLDGTTKADDRGILLQ 1203

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +NE   P  +      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1204 TFNEANCPYFIFMLSTRAGGLGLNLQT-ADTVILFDSDWNPHQDLQA-----QDRAHRIG 1257

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V V  L+   +++E +L   R K  +   ++ A
Sbjct: 1258 QVNEVRVLRLMTVQSVEEKILAAARWKMNMDSKIIQA 1294


>gi|118378915|ref|XP_001022631.1| HSA family protein [Tetrahymena thermophila]
 gi|89304398|gb|EAS02386.1| HSA family protein [Tetrahymena thermophila SB210]
          Length = 1232

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----- 89
           N   Y  ++  W+     K + L+ ++ K       +++       +  +++ F      
Sbjct: 724 NSDAYQIDDMIWRV--SGKFELLDKMLAKLIRTGHRVLIFTQMTHVMDLMEEYFKLREDY 781

Query: 90  ------QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  G T  D+    + ++N+   P  +      + G GLNLQ   + ++ F   W+
Sbjct: 782 IKYLRLDGTTKADERGVKMAQFNQPNSPYNVFILSTRAGGLGLNLQT-ADTVIIFDSDWN 840

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  QQ        R  + G K  V VY L+    I+E +L +   K  + ++++ A
Sbjct: 841 PQMDQQA-----QDRAHRIGSKSEVRVYRLVTNTWIEEEILSKAAYKMGLDEMIIQA 892


>gi|17986031|ref|NP_523441.1| kismet, isoform A [Drosophila melanogaster]
 gi|7230509|gb|AAF43004.1|AF215703_1 KISMET-L long isoform [Drosophila melanogaster]
 gi|22945599|gb|AAF51527.3| kismet, isoform A [Drosophila melanogaster]
          Length = 5322

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2363 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2422

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2423 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2476

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +NT +  +  +   K  +   +L ++  + 
Sbjct: 2477 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 2506


>gi|239611529|gb|EEQ88516.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1148

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    +V   F          L  LQ  F    G T 
Sbjct: 935  KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 994

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 995  VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1048

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 1049 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 1090


>gi|12654665|gb|AAH01171.1|AAH01171 Unknown (protein for IMAGE:3355762) [Homo sapiens]
          Length = 896

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 294 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 345

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 346 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 405

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 406 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 459

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 460 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 495


>gi|198433296|ref|XP_002124821.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            [Ciona intestinalis]
          Length = 4218

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+    Q              ++    I  ++       +   
Sbjct: 1917 GGHKVLIFSQMVRVLDILEDYLVQRSYFYERIDGCIRGNERQMAIDRFSRKGSDRFVFLL 1976

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ F   W+ +   Q   R       + G ++ V +Y LI +N
Sbjct: 1977 CTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQQKPVKIYRLITRN 2030

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + +  +  +   K  +   +L ++      +
Sbjct: 2031 SYEREMFDKASLKLGLDKAVLQSISGRQDQI 2061


>gi|323348194|gb|EGA82445.1| Sth1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1359

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNXFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|219122179|ref|XP_002181429.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407415|gb|EEC47352.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 902

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 50/223 (22%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPI 71
            L G  I A   A    + L  A+       +   ++    K+  L  +IE  + N    
Sbjct: 464 KLCGHPILAEELAINVGRLLATAS------PDDLVQQ--SAKLCILLSLIENFRQNGHRT 515

Query: 72  IVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGK--IPLLFAHPASC 119
           ++       L  ++K             G + ++D    + ++N        +     + 
Sbjct: 516 LIFSQSTKMLDIIEKTLLSEGVELLRIDGSSKEQDRQRFVDDFNSNTSTTDAMLLSTKAA 575

Query: 120 GHGLNLQYGGNILVFFSLWW-----DLEEHQQ----------------------MIERIG 152
           G GL L  G + ++ +   W          +Q                        +   
Sbjct: 576 GVGLTL-VGADRVIIYDPSWYVSEARFALQEQRHLECAIAVTLLLFSLLSNRTPAEDSQA 634

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V R  + G  R V VY LIA  T++E + ++   K  I+  + 
Sbjct: 635 VDRCYRIGQTRDVVVYRLIAAGTVEEKMYEKQVHKDGIRRTVF 677


>gi|327348460|gb|EGE77317.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1179

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
            K+ + +H  K+  L  ++ +   N    +V   F          L  LQ  F    G T 
Sbjct: 966  KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 95   DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 1121


>gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 2707

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LL 112
            +A+   +++       L  +++                  D     I  +++      + 
Sbjct: 1452 RADGHKVLIFSQMVRVLDIIEEFLVVQNYTFERIDGNVRGDLRQTAIDRFSKKDSDRFVF 1511

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY LI 
Sbjct: 1512 LLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTKMVKVYRLIT 1565

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
             NT +  +  +   K  +   +L +
Sbjct: 1566 CNTYEREMFDKASLKLGLDKAVLQS 1590


>gi|4325130|gb|AAD17276.1| dMi-2 protein [Drosophila melanogaster]
          Length = 1982

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  A    +++       L  L+          +    G T       I 
Sbjct: 1053 KLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAID 1112

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1113 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1166

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1167 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1196


>gi|312215580|emb|CBX95532.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1194

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 21/203 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANG--AVYYDEEKHWKEVHDEKIKALEVIIE 64
             + +++ +   + I       +  +C QLA    A+   E K+ + +   K+ AL  +++
Sbjct: 896  LREDMFAESNADIIYEELQLYQDYQCHQLATKYKALKKFELKNHEWMDSGKVTALLALLK 955

Query: 65   K--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE--WNEGKIPL 111
            K   N    +V   F S         D   +      G T   +  ++ +  +++  I L
Sbjct: 956  KYKENGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIAERQSLMDVFYSDTSIEL 1015

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  S G G+NL    N ++ F   ++ ++  Q        R  + G  R V V  L+
Sbjct: 1016 FMISTKSGGAGINL-ACANKVIIFDSSFNPQDDIQA-----ENRAHRVGQTREVEVVRLV 1069

Query: 172  AQNTIDELVLQRLRTKSTIQDLL 194
             + T++E +     +K  +  ++
Sbjct: 1070 TKGTVEEQIYALGVSKLELDKMV 1092


>gi|198426669|ref|XP_002129254.1| PREDICTED: ATRX protein [Ciona intestinalis]
          Length = 1900

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 23/205 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII- 63
             +   E          ++   + K    L +   +    ++          +  +E I+ 
Sbjct: 1449 KELWFEKVMPSDNLLYDSVEMSGKITLLLSILKSSTMMGDKVVLFSQSLLTLDLIEDILR 1508

Query: 64   ------EKANAAP--IIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPL 111
                       +P  + +   +   D  R+  +       ++    I ++N     +  L
Sbjct: 1509 YVTMDGSDNTRSPTGVRIMKWYKDVDYYRMDGSTKN----ERRKTIIDQFNNESDTRCRL 1564

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G G+NL  G N  + F   W+     Q I RI      + G  +  ++Y  I
Sbjct: 1565 MLVSTRAGGIGINL-VGANRAIVFDASWNPTHDVQSIFRI-----YRFGQTKPCYIYRFI 1618

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T++E +  R   K ++   +++
Sbjct: 1619 AQGTMEEKIYDRQVVKQSLASRVVD 1643


>gi|330982227|gb|EGH80330.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 93

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +  WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS
Sbjct: 1   ADTVIHYDPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKS 55

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 56  ALASGVLDG 64


>gi|302783170|ref|XP_002973358.1| hypothetical protein SELMODRAFT_50459 [Selaginella moellendorffii]
 gi|300159111|gb|EFJ25732.1| hypothetical protein SELMODRAFT_50459 [Selaginella moellendorffii]
          Length = 710

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 27/190 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPII 72
           L   +I A  +  K+     LA      D  KH       KI  L  ++E         +
Sbjct: 333 LDSTDIAAAEAMRKS--LAGLAEPEPDSDGNKH-----SCKIVFLMALLENLVQEGHRTL 385

Query: 73  VAYHFNSDLARLQKAFPQ---------GRTLDKDPC-TIQEWNEG--KIPLLFAHPASCG 120
           V       L  +Q+   +         G+T   +    ++++      + +        G
Sbjct: 386 VFAQTLKMLDIIQEEITKRRYSFCRIDGKTKGSERQRIVEDFQTDGCTVSIFLLTSQVGG 445

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    + +V     W+  +  Q ++R       + G  R V VY L+   T++E +
Sbjct: 446 LGLTLT-AADRVVIVDPAWNPSKDNQSVDR-----AYRIGQLRDVIVYRLMTSGTLEEKI 499

Query: 181 LQRLRTKSTI 190
            ++   K  +
Sbjct: 500 YRKQVFKGGL 509


>gi|222635334|gb|EEE65466.1| hypothetical protein OsJ_20855 [Oryza sativa Japonica Group]
          Length = 4273

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT--------IQ 102
            K++ L+ ++ K  A    +++       L  ++    + + + L  D  T        I 
Sbjct: 1262 KLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQERGALID 1321

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N       +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1322 KFNNPNSQAFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1375

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L    T++E V      K  + +  + A
Sbjct: 1376 QKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1412


>gi|4733988|gb|AAD28668.1| putative chromodomain-helicase-DNA-binding protein [Arabidopsis
            thaliana]
          Length = 1738

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 35/231 (15%)

Query: 2    KQYHK--FQR---ELYCDLQGENIEAFNSASKTVKCL------QLANGAVYYDEEKHWKE 50
            KQY+K   +R   +L   ++G  +   N   +  KC       + A+     D   + K 
Sbjct: 886  KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKL 945

Query: 51   ----VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLD 95
                +   K+  L+ ++ +       +++       L  L +             G T  
Sbjct: 946  DKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKA 1005

Query: 96   K-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     +  +N              + G G+NL    + +V F   W+ +   Q + R  
Sbjct: 1006 ELRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQNDLQAMSR-- 1062

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1063 ---AHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGR 1110


>gi|171679747|ref|XP_001904820.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939499|emb|CAP64727.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1563

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 58/147 (39%), Gaps = 19/147 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++AL+ ++ + +      ++       L  L++             G 
Sbjct: 1423 PDKRLLQYDCGKLQALDKLLRRLHAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGA 1482

Query: 93   TLDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +   +N   +I        S G G+NL  G + ++F+   W+       +++
Sbjct: 1483 TKVEQRQILTDRFNHDTRITCFILSTRSGGLGINLT-GADTVIFYDQDWN-----PAMDK 1536

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTID 177
                R  + G  R V +Y L++++T +
Sbjct: 1537 QCQDRAHRIGQTRDVHIYRLVSEHTCE 1563


>gi|148666355|gb|EDK98771.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1`, isoform
            CRA_a [Mus musculus]
          Length = 1032

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K +AL  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 857  LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 916

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 917  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 970

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 971  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1007


>gi|207344407|gb|EDZ71563.1| YIL126Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1358

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 803 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 862

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 863 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 916

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 917 TDSVEEVILERAMQKLDIDGKVIQAGK 943


>gi|151943040|gb|EDN61375.1| SNF2-like protein [Saccharomyces cerevisiae YJM789]
          Length = 1359

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|115643432|ref|XP_001197308.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
 gi|115663707|ref|XP_001195839.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
          Length = 1496

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT-----IQ 102
            K + L+ I+ K       I++     + +  L+     + F   R             +Q
Sbjct: 1144 KFELLDRILPKLKALGHRILLFCQMTTLMTILEDFFVYRGFKYLRLDGTTKADDRGILLQ 1203

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +NE   P  +      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 1204 TFNEANCPYFIFMLSTRAGGLGLNLQT-ADTVILFDSDWNPHQDLQA-----QDRAHRIG 1257

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V V  L+   +++E +L   R K  +   ++ A
Sbjct: 1258 QVNEVRVLRLMTVQSVEEKILAAARWKMNMDSKIIQA 1294


>gi|68483751|ref|XP_714234.1| hypothetical protein CaO19.607 [Candida albicans SC5314]
 gi|46435782|gb|EAK95157.1| hypothetical protein CaO19.607 [Candida albicans SC5314]
 gi|238880196|gb|EEQ43834.1| hypothetical protein CAWG_02085 [Candida albicans WO-1]
          Length = 1055

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------------AFPQGRTL 94
             K++ L+ ++   ++     ++       L  L+K                       +
Sbjct: 612 SGKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPI 671

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            K    +  +N +  + +        G G+NL  G + ++ +   W+     Q  ER   
Sbjct: 672 SKRQMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARERAW- 729

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 730 ----RLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 773


>gi|242015095|ref|XP_002428209.1| Chromo domain protein, putative [Pediculus humanus corporis]
 gi|212512770|gb|EEB15471.1| Chromo domain protein, putative [Pediculus humanus corporis]
          Length = 1795

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 69  APIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQEWNEGKIP--LLFAHP 116
             +++       L  L +             G    +     +  +N             
Sbjct: 758 HRVLIFSQMVRMLDILAEYLQLRRFQFQRLDGSIKGEIRKQALDHFNAENSMDFCFLLST 817

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q   R       + G K  V +Y L+ +N++
Sbjct: 818 RAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKNQVNIYRLVTKNSV 871

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +E +++R + K  +  L++  +
Sbjct: 872 EEEIIERAKKKMVLDHLVIQRM 893


>gi|156544311|ref|XP_001607169.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1587

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT 100
               K + L+ I+ K  A    +++       +  +         +     G T  +D   
Sbjct: 1081 ASGKFELLDRILPKLKATGHRVLLFCQMTQLMTIMEDYLNWRGFRYLRLDGTTKAEDRGD 1140

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +N+      L      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1141 LLKRFNDPSSDYFLFILSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 1194

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1195 RIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1234


>gi|119571321|gb|EAW50936.1| chromodomain helicase DNA binding protein 1-like, isoform CRA_a
           [Homo sapiens]
          Length = 897

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 346

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 347 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 406

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 407 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 460

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 461 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|149029137|gb|EDL84422.1| similar to putative repair and recombination helicase RAD26L
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 708

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + +   +++       L  LQ+             G T  ++    
Sbjct: 514 SGKMKVLDQLLNHFRKHRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 573

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q I+R       + 
Sbjct: 574 VKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPANDLQAIDR-----AYRI 627

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 628 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLH 659


>gi|414117|emb|CAA51407.1| HBRM [Homo sapiens]
          Length = 1586

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1044 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1103

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1104 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1157

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1197


>gi|28629217|gb|AAO49505.1| ALC1 [Homo sapiens]
          Length = 897

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 346

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 347 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 406

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 407 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 460

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 461 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|28175792|gb|AAH43501.1| Similar to RIKEN cDNA 4432404A22 gene [Homo sapiens]
          Length = 890

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 288 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 339

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 340 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 399

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 400 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 453

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 454 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 489


>gi|52076407|dbj|BAD45237.1| putative STH1 protein [Oryza sativa Japonica Group]
          Length = 3389

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT--------IQ 102
            K++ L+ ++ K  A    +++       L  ++    + + + L  D  T        I 
Sbjct: 1336 KLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQERGALID 1395

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N       +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1396 KFNNPNSQAFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 1449

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L    T++E V      K  + +  + A
Sbjct: 1450 QKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1486


>gi|296189845|ref|XP_002806533.1| PREDICTED: LOW QUALITY PROTEIN: probable global transcription
            activator SNF2L2-like [Callithrix jacchus]
          Length = 1589

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1047 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1106

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1107 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1160

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1161 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1200


>gi|281345379|gb|EFB20963.1| hypothetical protein PANDA_019836 [Ailuropoda melanoleuca]
          Length = 834

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 35/216 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E+      + ++  N  S+  KC    +    +D           H  E  
Sbjct: 253 MKDLDAFENEM-----AKKVKLQNVLSQLRKC---VDHPYLFDGVEPEPFEIGDHLIE-A 303

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 304 SGKLYLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 363

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  + +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 364 IKNFGQQPVFIFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 417

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++V V  LI ++T++E+V ++  +K  + + ++ 
Sbjct: 418 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 453


>gi|281200733|gb|EFA74951.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1336

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 19/150 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWN-EGKIPLLFA 114
                +++       L  +++     +              +    I E+N + +I     
Sbjct: 898  EGHRLLIFSQSVKMLNAIEQLLNYLKLSFLRIDGSISSSKERQKRIDEFNGDREIFCFLL 957

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                   GLN+    + +V F   W+       ++   V R  + G  + V VY L+   
Sbjct: 958  TIQVGALGLNMT-SADRVVIFDPSWN------TVDNQAVDRVYRIGQTKDVVVYRLMCCG 1010

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            TI+E + ++   K  +   +LN  K +  +
Sbjct: 1011 TIEEKIYRKQVFKGALMKTMLNQGKGQHRY 1040


>gi|115450111|ref|NP_001048656.1| Os03g0101700 [Oryza sativa Japonica Group]
 gi|108705687|gb|ABF93482.1| SNF2P, putative, expressed [Oryza sativa Japonica Group]
 gi|113547127|dbj|BAF10570.1| Os03g0101700 [Oryza sativa Japonica Group]
 gi|215694686|dbj|BAG89877.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 31/176 (17%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------------- 85
           E +H  +    K+  L++I++K +     +++       L  LQ                
Sbjct: 309 EGEHLVQ-ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGS 367

Query: 86  ----KAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               + F   ++    P    +++ N+    +      + G GLNL  G + ++F+   W
Sbjct: 368 VRAEERFAAIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDW 426

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +  +Q ++R       + G    V    L++Q TI+E++++R   K  +   ++
Sbjct: 427 NPQADKQALQR-----AHRIGQLNNVLSINLVSQRTIEEVIMRRAERKLKLSHSVI 477


>gi|73946639|ref|XP_860267.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 18 [Canis familiaris]
          Length = 1555

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1031 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1090

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1091 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1144

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1145 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1184


>gi|73946677|ref|XP_860893.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 35 [Canis familiaris]
          Length = 1584

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1060 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1119

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1120 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1173

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1174 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1213


>gi|322703872|gb|EFY95474.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1074

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-------DKDPCTIQE 103
            +K L  I E       I+   +   L  L+     + FP            D+     ++
Sbjct: 907  MKLLREIRE--TGEKTIIFSQWTLLLDLLEVAMWHEQFPDKPVRYDGSMTGDERSNAAKD 964

Query: 104  WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  +  ++     +   GLNL    + ++    +W+     Q I+R       + G +
Sbjct: 965  FRDRSECNVMLVSLRAGNAGLNLT-AASRVIIMDPFWNPYIEMQAIDR-----TYRIGQQ 1018

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + V VY ++ Q T+++ ++     K  I +  L+  +   I 
Sbjct: 1019 KEVEVYRILTQETVEDRIVALQNKKKEIVEAALDETESMKIG 1060


>gi|195398205|ref|XP_002057713.1| GJ18281 [Drosophila virilis]
 gi|194141367|gb|EDW57786.1| GJ18281 [Drosophila virilis]
          Length = 1924

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----RLQKAFPQGRT 93
            +  DE          K+  L+ ++ +       +++       L      LQK     + 
Sbjct: 847  LQQDEALQMLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQR 906

Query: 94   LDK------DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            LD           +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 907  LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 965

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 966  QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1013


>gi|302913005|ref|XP_003050823.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
            77-13-4]
 gi|256731761|gb|EEU45110.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
            77-13-4]
          Length = 1514

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 20/166 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PC 99
               K+  L+V++ K       +++   F + L  ++          R LD          
Sbjct: 1082 ASAKLLLLQVMLPKLQEKGHRVLIFSQFLNQLDIIEDFLGGLGYDYRRLDGSIGSLEKQR 1141

Query: 100  TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N    P+        + G G+NL    + ++     ++  +  Q + R       
Sbjct: 1142 RIDAFNAPGSPIFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AH 1195

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K+ V  + L+  ++++E ++Q  + K  +   L+ ++  + +
Sbjct: 1196 RIGQKKKVLCFQLMTVDSVEERIMQIGKKKMALDHALIESMDDDEL 1241


>gi|157127434|ref|XP_001654978.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108882413|gb|EAT46638.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 4467

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2264 KANGHRVLIFSQMVRCLDILEDYLIYRKYPFERIDGRIRGNLRQAAIDRYSKPDSDRFVF 2323

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2324 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 2377

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2378 RNTYEREMFDKASLKLGLDKAILQSM 2403


>gi|241959152|ref|XP_002422295.1| ATP-dependent helicase, putative; DNA repair and recombination
           protein rad26 homologue, putative [Candida dubliniensis
           CD36]
 gi|223645640|emb|CAX40300.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1054

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------------AFPQGRTL 94
             K++ L+ ++   +      ++       L  L+K                       +
Sbjct: 615 SGKMQVLKNLLRLWQHENHKTLLFCQTRQMLDILEKFVANLSLINGGDFKYLRMDGSTPI 674

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            K    +  +N +  + +        G G+NL  G + ++ +   W+     Q  ER   
Sbjct: 675 SKRQMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARERAW- 732

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 733 ----RLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 776


>gi|242208372|ref|XP_002470037.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730937|gb|EED84787.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1497

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 45/235 (19%)

Query: 2    KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQL----------------ANGAVYYDE 44
            + Y + ++ ++  D +    ++      + + +QL                 N +   D+
Sbjct: 868  QLYKQMKKYKMIADGKDTKGKSGGVKGLSNELMQLRKICQHPFLFESVEDRINPSGIVDD 927

Query: 45   EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
            +         KI+ L  I+ K  A    +++ +     +  ++              G T
Sbjct: 928  K---IVRASGKIELLSRILPKFFATDHRVLIFFQMTKVMDIMEDFLKFMGWKYLRLDGGT 984

Query: 94   LDKDPCT-IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF------FSLWWDLEEH 144
              +D    +Q +N     I +      + G GLNLQ    +++       F   W+    
Sbjct: 985  KTEDRAGHVQLFNAPDSDIRVFILSTRAGGLGLNLQTADTVIMNNLIDNSFDSDWNPHAD 1044

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q        R  + G  + V +   I + +++E + QR R K  I D ++ A +
Sbjct: 1045 LQA-----QDRAHRIGQTKVVRILRFITEKSVEESMFQRARYKLDIDDKVIQAGR 1094


>gi|218193665|gb|EEC76092.1| hypothetical protein OsI_13335 [Oryza sativa Indica Group]
          Length = 850

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 624 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 683

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 684 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 737

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 738 HSVEGRIIKKAFGKLRLEHVVI 759


>gi|145348183|ref|XP_001418535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578764|gb|ABO96828.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1326

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 43/229 (18%)

Query: 4   YHKF-QRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHW---------KEVH 52
           Y    + +++  L+G  +++     + +++  ++ N     D  +            E  
Sbjct: 546 YRALYENQIHVLLEGSKVKSVPQLRNLSMELRKVCNHPFLCDGLEEDYTNKRLAACAEKG 605

Query: 53  DEKIKALEVIIEKA---------------NAAPIIVAYHFNSDLARLQ----------KA 87
           D+   AL++++E +               +   +++   F   L  +Q          + 
Sbjct: 606 DQPPNALQLLVEGSGKMGLLAKLLAKLKRDGHKVLIFSQFTMVLDLIQDFMNASGHETER 665

Query: 88  FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                + +     I  +N  G          + G G+ L    +  + F   W+ +   Q
Sbjct: 666 LDGNTSAENRQAGIDRFNTPGAGFAYLLSTRAGGMGITLT-SADTAIIFDSDWNPQNDLQ 724

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R       + G  + V VY  I ++T ++ + +    K  + + +L
Sbjct: 725 AMARC-----HRIGQTKEVKVYRFITKDTYEQSLFETASRKYGLDEAIL 768


>gi|116235007|dbj|BAF34943.1| chromatin remodeling factor DDM1b [Oryza sativa Japonica Group]
 gi|116235011|dbj|BAF34945.1| chromatin remodeling factor DDM1b [Oryza sativa Japonica Group]
 gi|222625697|gb|EEE59829.1| hypothetical protein OsJ_12393 [Oryza sativa Japonica Group]
          Length = 849

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 623 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 682

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 683 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 736

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 737 HSVEGRIIKKAFGKLRLEHVVI 758


>gi|302789546|ref|XP_002976541.1| hypothetical protein SELMODRAFT_105336 [Selaginella moellendorffii]
 gi|300155579|gb|EFJ22210.1| hypothetical protein SELMODRAFT_105336 [Selaginella moellendorffii]
          Length = 788

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 27/190 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPII 72
           L   +I A  +  K+     LA      D  KH       KI  L  ++E         +
Sbjct: 399 LDSTDIAAAEAMRKS--LAGLAEPEPDSDGNKH-----SCKIVFLMALLENLVQEGHRTL 451

Query: 73  VAYHFNSDLARLQKAFPQ---------GRTLDKDPC-TIQEWNEG--KIPLLFAHPASCG 120
           V       L  +Q+   +         G+T   +    ++++      + +        G
Sbjct: 452 VFAQTLKMLDIIQEEITKRRYSFCRIDGKTKGSERQRIVEDFQTDGCTVSIFLLTSQVGG 511

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    + +V     W+  +  Q ++R       + G  R V VY L+   T++E +
Sbjct: 512 LGLTLT-AADRVVIVDPAWNPSKDNQSVDR-----AYRIGQLRDVIVYRLMTSGTLEEKI 565

Query: 181 LQRLRTKSTI 190
            ++   K  +
Sbjct: 566 YRKQVFKGGL 575


>gi|297663858|ref|XP_002810380.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           2 [Pongo abelii]
          Length = 696

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E+      + ++  N  S+  KC    +    +D           H  E  
Sbjct: 93  MKDLDAFENEM-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 143

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 144 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 203

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 204 IKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 257

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 258 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 294


>gi|47211143|emb|CAF96563.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1919

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    + +V F   W+ +   Q   R       + G KR V +Y L+
Sbjct: 887 FLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKRQVNIYRLV 940

Query: 172 AQNTIDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
            + +++E +++R + K  +  L+   ++   K  +H 
Sbjct: 941 TKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHT 977


>gi|189208001|ref|XP_001940334.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976427|gb|EDU43053.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 742

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 18/163 (11%)

Query: 54  EKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
            KIKAL   ++++      IV   + S L  +QK           F    +       ++
Sbjct: 573 TKIKALVSDLLKQPKGTKSIVFSFWTSTLDLVQKGLSGSFITYTRFDGTTSQSNRSTALK 632

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++  +  I ++    +    GL++       +     W+    +Q + R+      + G 
Sbjct: 633 DFRQDPSISVILMTISCSAVGLDITAASRAYIL-EPQWNPTVEEQALARV-----HRMGQ 686

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + V     + +NT +E V++    K  + +LLL++ ++   H
Sbjct: 687 TKPVTTIRFVMENTFEERVVETQERKRRLAELLLSSEEQVAEH 729


>gi|145359958|ref|NP_178970.3| CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|330251136|gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana]
          Length = 1724

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 35/231 (15%)

Query: 2    KQYHK--FQR---ELYCDLQGENIEAFNSASKTVKCL------QLANGAVYYDEEKHWKE 50
            KQY+K   +R   +L   ++G  +   N   +  KC       + A+     D   + K 
Sbjct: 872  KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKL 931

Query: 51   ----VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLD 95
                +   K+  L+ ++ +       +++       L  L +             G T  
Sbjct: 932  DKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKA 991

Query: 96   K-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     +  +N              + G G+NL    + +V F   W+ +   Q + R  
Sbjct: 992  ELRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQNDLQAMSR-- 1048

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1049 ---AHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGR 1096


>gi|48255900|ref|NP_003061.3| probable global transcription activator SNF2L2 isoform a [Homo
            sapiens]
 gi|212276472|sp|P51531|SMCA2_HUMAN RecName: Full=Probable global transcription activator SNF2L2;
            AltName: Full=ATP-dependent helicase SMARCA2; AltName:
            Full=BRG1-associated factor 190B; Short=BAF190B; AltName:
            Full=Protein brahma homolog; Short=hBRM; AltName:
            Full=SNF2-alpha; AltName: Full=SWI/SNF-related
            matrix-associated actin-dependent regulator of chromatin
            subfamily A member 2
 gi|55957477|emb|CAI14599.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|55958982|emb|CAI12967.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|119579215|gb|EAW58811.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_a [Homo
            sapiens]
 gi|119579218|gb|EAW58814.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_a [Homo
            sapiens]
          Length = 1590

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1161

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|85540719|sp|Q7S1P9|RAD5_NEUCR RecName: Full=DNA repair protein rad-5
          Length = 1222

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 51   VHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                KI AL      + ++      +V   F S L+ +  A            G    K 
Sbjct: 1047 DSSAKIVALISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKA 1106

Query: 98   PCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +  +  K  +L     + G GLNL      +     WW      Q I+R+    
Sbjct: 1107 RAAVLTEFQSTNKFCVLLLSLKAGGVGLNLT-SAKRVYMMDPWWSFAVEAQAIDRV---- 1161

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G +  V VY  I + +++  +L+    K  I   L
Sbjct: 1162 -HRMGQEDEVRVYRFIVKQSVEMRMLRVQERKKFIATSL 1199


>gi|85090635|ref|XP_958511.1| DNA repair protein RAD5 [Neurospora crassa OR74A]
 gi|28919880|gb|EAA29275.1| DNA repair protein RAD5 [Neurospora crassa OR74A]
 gi|118496044|dbj|BAF37538.1| DNA repair and recombination protein MUS41 [Neurospora crassa]
          Length = 1175

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 51   VHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                KI AL      + ++      +V   F S L+ +  A            G    K 
Sbjct: 1000 DSSAKIVALISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKA 1059

Query: 98   PCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +  +  K  +L     + G GLNL      +     WW      Q I+R+    
Sbjct: 1060 RAAVLTEFQSTNKFCVLLLSLKAGGVGLNLT-SAKRVYMMDPWWSFAVEAQAIDRV---- 1114

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G +  V VY  I + +++  +L+    K  I   L
Sbjct: 1115 -HRMGQEDEVRVYRFIVKQSVEMRMLRVQERKKFIATSL 1152


>gi|126728045|ref|ZP_01743861.1| hypothetical protein SSE37_18682 [Sagittula stellata E-37]
 gi|126711010|gb|EBA10060.1| hypothetical protein SSE37_18682 [Sagittula stellata E-37]
          Length = 492

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 87/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDL----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           K Y  ++ +   ++    Q    +A     + ++ +Q+ +     DE    +     K+ 
Sbjct: 262 KLYDTYREQARAEVMQGGQLAEDDAEAVLKRLLRLVQVTSNPALVDENYKEEPG---KVA 318

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEW-NE 106
            L  ++ +A  + + +IV   F  +   L +   +           ++     I+++ N 
Sbjct: 319 ELNRLVREATDDGSKVIVWTSFVRNAEWLCRRLAEYGAVRVHGELPIEVRNRAIEDFKNR 378

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +L A P +   GL L    N  +++   + L+++ Q  +RI      +   KR  +
Sbjct: 379 EDISVLVATPGAAKEGLTLTV-ANHAIYYDRSFSLDDYLQSQDRI-----HRISQKRECY 432

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++ LI  +TID  V   L  K     LL + + KE
Sbjct: 433 IWNLICDDTIDCWVDSLLSAKRLAAQLLQSDVCKE 467


>gi|114658983|ref|XP_001170738.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 7
           [Pan troglodytes]
          Length = 1777

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N    +         + G G+NL    + +V F   W+ +   Q   R    
Sbjct: 795 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR---- 849

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 850 -AHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 892


>gi|62543565|ref|NP_031984.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Mus
           musculus]
 gi|29427670|sp|Q04692|SMRCD_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1; AltName: Full=ATP-dependent helicase SMARCAD1;
           AltName: Full=Enhancer trap locus homolog 1; Short=Etl-1
          Length = 1021

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K +AL  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 846 LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 905

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 906 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 959

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 960 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 996


>gi|311248656|ref|XP_003123249.1| PREDICTED: LOW QUALITY PROTEIN: transcription activator BRG1 [Sus
            scrofa]
          Length = 1475

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|308483748|ref|XP_003104075.1| hypothetical protein CRE_01100 [Caenorhabditis remanei]
 gi|308258383|gb|EFP02336.1| hypothetical protein CRE_01100 [Caenorhabditis remanei]
          Length = 1083

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN 105
            ++ +  I+++     +++   + S L  ++K             G+ L KD    +  +N
Sbjct: 910  LEIVRDILDR--KEKVVIVSQWTSVLNLVEKHIQNGGHNYTSITGQVLVKDRQERVDSFN 967

Query: 106  --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +G   ++     + G       GGN L+   L W+    QQ  +RI      + G K+
Sbjct: 968  QEKGGAQVMLLSL-TAGGVGLNLVGGNHLIMIDLHWNPALEQQACDRI-----YRMGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             V ++ L+ + TI++ V+     K  +   +L+      +
Sbjct: 1022 PVHIHRLVVKGTIEQRVMDLQEKKLALAASVLDGTATRKM 1061


>gi|261198487|ref|XP_002625645.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239594797|gb|EEQ77378.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 929

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLA--------------RL 84
            +E     E    KI+AL  I+     AP    +V   + S L               R+
Sbjct: 745 TNEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARI 804

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +   +D       N+    +L A    C  GLNL    N ++    WW     
Sbjct: 805 DGRMSSAK---RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIE 860

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            Q ++R+      + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 861 DQAVDRV-----YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 901


>gi|321457359|gb|EFX68447.1| hypothetical protein DAPPUDRAFT_260126 [Daphnia pulex]
          Length = 462

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 58  ALEVIIEKANA-----APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            L+ I+++          I++   + + L  +           +        N+    +L
Sbjct: 299 KLKYILDEVQGILSVKEKIVIVSQWTAMLDLIAIQLDNLSIAYQVINGNISANKRTDIIL 358

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL  GGN L      W+ +   Q   RI      + G  ++V V+ ++ 
Sbjct: 359 LLSLLAGGTGLNL-IGGNHLFLVDPHWNPQLEAQATNRIF-----RIGQTKSVSVHRIVI 412

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q++I+E VL     K    D ++  
Sbjct: 413 QDSIEEKVLALQLNKIATADTIITG 437


>gi|312127313|ref|YP_003992187.1| SNF2-like protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777332|gb|ADQ06818.1| SNF2-related protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 939

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 33/222 (14%)

Query: 1   MKQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-----E 54
           M  Y K    ++  D +    +         K + + +     +++ H K ++       
Sbjct: 698 MTDYQKMLYSKIIADFKKSENKKQILLDTLHKLIYVCDFPEISNDDIHKKNINKVVKECA 757

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNS---DLARLQK-------AFPQGRTLD--KDPCT 100
           K+K L  I+++        ++   F      L+ + +           G   D  +    
Sbjct: 758 KVKKLIEILDEIKQKDEKALIFTKFKPVQAMLSSIIQQRYGLFVNILNGEIRDSSRRKQI 817

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N   +  +L  +    G GLN+    N ++ ++  W+  +  Q  +R+      + 
Sbjct: 818 IDNFNQSAEFNVLILNTQVGGIGLNIT-SANHVIHYTREWNPAKEDQATDRV-----YRI 871

Query: 160 GFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
           G ++ V VYYLI       + TIDE +   L+ K  +   ++
Sbjct: 872 GQQKDVNVYYLITTAPDLVKKTIDEHIHDLLQAKKELFKEVI 913


>gi|148612870|ref|NP_004275.3| chromodomain-helicase-DNA-binding protein 1-like [Homo sapiens]
 gi|311033359|sp|Q86WJ1|CHD1L_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like;
           AltName: Full=Amplified in liver cancer protein 1
 gi|55663194|emb|CAH72650.1| chromodomain helicase DNA binding protein 1-like [Homo sapiens]
          Length = 897

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 346

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 347 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 406

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 407 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 460

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 461 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|118373098|ref|XP_001019743.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89301510|gb|EAR99498.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1254

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + E    L    I          K LQ L NG       KH   +  +    LE 
Sbjct: 443 LFEGIEEEGLPPLGEHIITNCGKMMVLDKLLQKLKNG-------KHQVLIFSQMTMVLED 495

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCG 120
                          F     R+          D+D        E     +      + G
Sbjct: 496 YCN---------YRQFK--YCRIDGNTDMT---DRDNQISDFVKEDSTKYIFLLSTRAGG 541

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    + +V +   W+ +   Q ++R       + G K  V VY LI++NTI+E +
Sbjct: 542 LGINL-ATADTVVLYDSDWNPQMDLQAMDR-----AHRIGQKNIVNVYRLISENTIEEKI 595

Query: 181 LQRLRTKSTIQDLLLN 196
           ++R   K     L++ 
Sbjct: 596 IERQTIKLKWDQLIIQ 611


>gi|73946649|ref|XP_860440.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 23 [Canis familiaris]
          Length = 1556

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1032 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1091

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1092 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1145

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1146 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|66800671|ref|XP_629261.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462656|gb|EAL60858.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3071

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQ 90
             +E          K+  ++ ++++  A    +++       L  L+              
Sbjct: 1198 DEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLD 1257

Query: 91   GRTLDKDPCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G    +     I  + +      +      + G G+NL    + ++ F   W+ +   Q 
Sbjct: 1258 GSIKSEVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTT-ADTVILFDSDWNPQSDLQA 1316

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R       + G    V VY LI +NT +E + +    K  +  ++L+  K +
Sbjct: 1317 QARC-----HRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLSTNKDK 1365


>gi|327351006|gb|EGE79863.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 931

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLA--------------RL 84
            +E     E    KI+AL  I+     AP    +V   + S L               R+
Sbjct: 747 TNEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARI 806

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +   +D       N+    +L A    C  GLNL    N ++    WW     
Sbjct: 807 DGRMSSAK---RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIE 862

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            Q ++R+      + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 863 DQAVDRV-----YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 903


>gi|114558342|ref|XP_513751.2| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           9 [Pan troglodytes]
          Length = 684

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 345

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 406 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 459

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 460 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|168705803|ref|ZP_02738080.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------KDPCTIQEWNE 106
           +  +E + E       I+   +   L  L KA  +   L          + P   +  ++
Sbjct: 12  LSDMEEVAES--GRKAIIFSQWVEPLEVLAKALAKYGPLQYHGKIPQPQRTPILDRFKSD 69

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +L     +   GLNLQ+  N +  F  WW+     Q I R       + G K  V 
Sbjct: 70  PSAHVLLMSYGTGSVGLNLQF-TNYVFLFDRWWNPAIEDQAINR-----AHRLGQKHPVT 123

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V   ++  TI+  +   L  K  + + L+
Sbjct: 124 VTRFLSGGTIEGRIADILDAKRKVFNDLI 152


>gi|31322808|gb|AAP31846.1| Brg1p [Tetrahymena thermophila]
          Length = 1228

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----- 89
           N   Y  ++  WK     K + L+ ++ K       +++       +  +++ F      
Sbjct: 720 NSDAYQIDDMIWKV--SGKFELLDKMLAKLIRTGHRVLIFTQMTHVMDLMEEYFKLREDY 777

Query: 90  ------QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  G T  D+    + ++N+   P  +      + G GLNLQ   + ++ F   W+
Sbjct: 778 IKYLRLDGTTKADERGVKMAQFNQPNSPYNVFILSTRAGGLGLNLQT-ADTVIIFDSDWN 836

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  QQ        R  + G K  V VY L+    I+E +L +   K  + ++++ A
Sbjct: 837 PQMDQQA-----QDRAHRIGSKSEVRVYRLVTNTWIEEEILSKAAYKMGLDEMIIQA 888


>gi|86136167|ref|ZP_01054746.1| probable swi/snf family helicase 2 [Roseobacter sp. MED193]
 gi|85827041|gb|EAQ47237.1| probable swi/snf family helicase 2 [Roseobacter sp. MED193]
          Length = 603

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 34/162 (20%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---FPQ-------GRTLDKDPCTIQ 102
           K++    ++ +A  N   +IV   FN     L++A    P        G T  +D  TI 
Sbjct: 434 KMERAVDLLREAFANGRKVIVFALFNRIGDLLKQACSHLPDTHWGAINGSTPQEDRQTI- 492

Query: 103 EWNEGKIPLLFAH---------PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I L  AH         P + G GLN+     +++ F+  W+     Q   R   
Sbjct: 493 ------IDLFAAHEGSACLVLNPKAAGAGLNIT-AATVVIHFTPVWNPALEAQASAR--- 542

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G    V VY L   +T++E+++ R   K+ + +  +
Sbjct: 543 --AHRRGQTEPVTVYRLFYLDTVEEVMIDRSAWKNDLANETV 582


>gi|218200191|gb|EEC82618.1| hypothetical protein OsI_27196 [Oryza sativa Indica Group]
          Length = 1734

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
              +++       L  L +             G T  D     ++ +N             
Sbjct: 929  HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLST 988

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   ++
Sbjct: 989  RAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQQETVNIYRFVTCKSV 1042

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            +E +L+R + K  +  L++  L  E  
Sbjct: 1043 EEDILERAKKKMVLDHLVIQKLNAEGR 1069


>gi|149944717|ref|NP_001092585.1| probable global transcription activator SNF2L2 [Bos taurus]
 gi|148745424|gb|AAI42522.1| SMARCA2 protein [Bos taurus]
 gi|296484787|gb|DAA26902.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a2 [Bos taurus]
          Length = 1554

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1030 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1089

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1090 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1143

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1144 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1183


>gi|48255898|ref|NP_620614.2| probable global transcription activator SNF2L2 isoform b [Homo
            sapiens]
 gi|55957478|emb|CAI14600.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|55958983|emb|CAI12968.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|119579217|gb|EAW58813.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_c [Homo
            sapiens]
 gi|119579219|gb|EAW58815.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_c [Homo
            sapiens]
 gi|162318924|gb|AAI56186.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [synthetic construct]
 gi|307686381|dbj|BAJ21121.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [synthetic construct]
          Length = 1572

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1161

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|293355127|ref|XP_002728634.1| PREDICTED: rCG44314-like [Rattus norvegicus]
          Length = 2802

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+              GR   +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|293343243|ref|XP_002725430.1| PREDICTED: Chd9 protein-like isoform 2 [Rattus norvegicus]
          Length = 2876

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+              GR   +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|226294171|gb|EEH49591.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb18]
          Length = 1188

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTL---------------- 94
               KI AL   + K  +   ++V   F S L  +                          
Sbjct: 986  TSAKIHALISHLTKLPSNDKVVVFSQFTSFLDLIGHQLTCAGISHLRFDGSISQTSRAAV 1045

Query: 95   --------------------DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNI 131
                                 +        N  K     +L     + G GLNL    N 
Sbjct: 1046 LAKFCSVAVADDKNDDDDEGKRQSKLPSSNNHAKESPPNVLLISLRAGGVGLNLT-AANH 1104

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++    WW      Q I+R+      + G  R V V   I +++I+  +L+    K  I 
Sbjct: 1105 VIMMDPWWSFATEAQAIDRV-----HRMGQLRDVTVTRFIVKDSIEGRILKIQERKMMIA 1159

Query: 192  DLL 194
              L
Sbjct: 1160 GSL 1162


>gi|225684512|gb|EEH22796.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb03]
          Length = 1247

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTL---------------- 94
               KI AL   + K  +   ++V   F S L  +                          
Sbjct: 1045 TSAKIHALISHLTKLPSNDKVVVFSQFTSFLDLIGHQLTCAGISHLRFDGSISQTSRAAV 1104

Query: 95   --------------------DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNI 131
                                 +        N  K     +L     + G GLNL    N 
Sbjct: 1105 LAKFCSVAVADDKNDDDDEGKRQSKLPSSNNHAKESPPNVLLISLRAGGVGLNLT-AANH 1163

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++    WW      Q I+R+      + G  R V V   I +++I+  +L+    K  I 
Sbjct: 1164 VIMMDPWWSFATEAQAIDRV-----HRMGQLRDVTVTRFIVKDSIEGRILKIQERKMMIA 1218

Query: 192  DLL 194
              L
Sbjct: 1219 GSL 1221


>gi|149032671|gb|EDL87541.1| rCG44314 [Rattus norvegicus]
          Length = 2698

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+              GR   +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|293343241|ref|XP_002725429.1| PREDICTED: Chd9 protein-like isoform 1 [Rattus norvegicus]
          Length = 2867

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+              GR   +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|62733578|gb|AAX95695.1| SNF2 family N-terminal domain, putative [Oryza sativa Japonica
           Group]
 gi|108710803|gb|ABF98598.1| Swi2/Snf2-related protein DDM1, putative [Oryza sativa Japonica
           Group]
          Length = 811

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 585 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 644

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 645 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 698

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 699 HSVEGRIIKKAFGKLRLEHVVI 720


>gi|222637616|gb|EEE67748.1| hypothetical protein OsJ_25446 [Oryza sativa Japonica Group]
          Length = 1734

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
              +++       L  L +             G T  D     ++ +N             
Sbjct: 929  HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLST 988

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   ++
Sbjct: 989  RAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQQETVNIYRFVTCKSV 1042

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            +E +L+R + K  +  L++  L  E  
Sbjct: 1043 EEDILERAKKKMVLDHLVIQKLNAEGR 1069


>gi|68483838|ref|XP_714194.1| hypothetical protein CaO19.8240 [Candida albicans SC5314]
 gi|46435735|gb|EAK95111.1| hypothetical protein CaO19.8240 [Candida albicans SC5314]
          Length = 1055

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------------AFPQGRTL 94
             K++ L+ ++   ++     ++       L  L+K                       +
Sbjct: 612 SGKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPI 671

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            K    +  +N +  + +        G G+NL  G + ++ +   W+     Q  ER   
Sbjct: 672 SKRQMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDIQARERAW- 729

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 730 ----RLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 773


>gi|82596119|ref|XP_726130.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481408|gb|EAA17695.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 1312

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLL 112
            +A    +++   F   L  L+     + +   R             I+E+N       + 
Sbjct: 1138 EAKMHKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIY 1197

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    N ++ +   W+     Q I+R       + G KR V V+ L+ 
Sbjct: 1198 LISTRAGGLGINLT-AANHVIMYDEDWNPFIDLQAIDR-----AHRIGQKREVNVWKLMT 1251

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + T++E +  R   K  +  L++   + E
Sbjct: 1252 EWTVEERMAFRREQKLKLDKLVVQTQEDE 1280


>gi|312385188|gb|EFR29745.1| hypothetical protein AND_01060 [Anopheles darlingi]
          Length = 5373

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDK-----DPCTIQEWNEGKIP--LL 112
            +AN   +++       L  L+     K +P  R   +         I  +++      + 
Sbjct: 1601 RANGHRVLIFSQMVRCLDILEDYLMYKKYPFERIDGRIRGNLRQAAIDRYSKPDSDRFVF 1660

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 1661 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKIYRLLC 1714

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 1715 RNTYEREMFDKASLKLGLDKAVLQSM 1740


>gi|308501284|ref|XP_003112827.1| CRE-LET-418 protein [Caenorhabditis remanei]
 gi|308267395|gb|EFP11348.1| CRE-LET-418 protein [Caenorhabditis remanei]
          Length = 1884

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
            E      +  K   L+ ++ K       +++       L  +         +     G  
Sbjct: 913  EGTALIKNSGKFALLQKMLRKLKDGGHRVLIFSQMTMMLDIMEDFCDVEGYKYERIDGSI 972

Query: 94   LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     I  +N    +  +      + G G+NL    + ++ +   W+     Q    
Sbjct: 973  TGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1028

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +R  + G K  V +Y  + + +++E +    + K  +  L++ A
Sbjct: 1029 --FSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLNHLVVRA 1073


>gi|51593084|ref|NP_035546.2| probable global transcription activator SNF2L2 isoform 1 [Mus
            musculus]
          Length = 1583

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1059 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1118

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1119 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1173 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|52138743|ref|NP_001004446.1| probable global transcription activator SNF2L2 [Rattus norvegicus]
 gi|49616741|gb|AAT67217.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a2 [Rattus norvegicus]
          Length = 1597

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1055 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1114

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1115 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1168

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1169 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1208


>gi|281343214|gb|EFB18798.1| hypothetical protein PANDA_010098 [Ailuropoda melanoleuca]
          Length = 1318

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           E         K+  L+ I+ K       +++       L  L+          +    G 
Sbjct: 368 EGGALIKASGKLMLLQKILRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 427

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 428 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 483

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 484 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 521


>gi|323508282|emb|CBQ68153.1| related to helicase-dna-binding protein [Sporisorium reilianum]
          Length = 2273

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
                K+  L+ ++ K  A    +++   F  +L  + + F +G               + 
Sbjct: 1323 DASAKLSLLQRLLPKLKAEGHRVLLFSQFVINLD-IVEVFLRGEGYKFLRLDGAIGQKQR 1381

Query: 98   PCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N    P         + G G+NL    + ++     ++     Q I R     
Sbjct: 1382 QKGIDAFNAPDSPYFIYMISTRAGGVGINL-ATADTVIIMDPDFNPHVDMQAIAR----- 1435

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G  + + V+ L+ + T +E +++  + K  +  L++  L KE
Sbjct: 1436 AHRIGQTKKLLVFTLMCKATAEERMIESAKRKMMLDHLIVQNLDKE 1481


>gi|195496103|ref|XP_002095551.1| GE22457 [Drosophila yakuba]
 gi|194181652|gb|EDW95263.1| GE22457 [Drosophila yakuba]
          Length = 1982

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  +    +++       L  L+          +    G T       I 
Sbjct: 1053 KLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAID 1112

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1113 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1166

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1167 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1196


>gi|17569817|ref|NP_510140.1| CHromoDomain protein family member (chd-3) [Caenorhabditis elegans]
 gi|6165993|sp|Q22516|CHD3_CAEEL RecName: Full=Chromodomain-helicase-DNA-binding protein 3 homolog;
            Short=CHD-3
 gi|3875165|emb|CAA91798.1| C. elegans protein T14G8.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|3879819|emb|CAA91810.1| C. elegans protein T14G8.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|11095331|gb|AAG29837.1| CHD-3 [Caenorhabditis elegans]
          Length = 1787

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 65   KANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEG--KIPLL 112
            K     +++       L  L         +     G    +     I  +N    K  + 
Sbjct: 953  KDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVF 1012

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+     Q       +R  + G K  V +Y  + 
Sbjct: 1013 LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRLGQKHKVMIYRFVT 1066

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + +++E +    + K  +  L++ A
Sbjct: 1067 KGSVEERITSVAKKKMLLTHLVVRA 1091


>gi|322699637|gb|EFY91397.1| putative DNA repair protein RAD26 [Metarhizium acridum CQMa 102]
          Length = 1075

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE-WNEGKIP-LLFAH 115
           N   ++V  H    L  LQ  F           G    ++   + + +N      +    
Sbjct: 567 NGDKVLVFSHSVRLLRILQHLFTSTSYNVSYLDGSLSYEERQDVVDTFNSDPTQFVFLIS 626

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+Q T
Sbjct: 627 TKAGGVGLNIT-SANKVVIVDPHWNPSYDLQA-----QDRAYRIGQTRDVEVFRLISQGT 680

Query: 176 IDELVLQRLRTKSTIQD 192
           ++E+V  R   K    +
Sbjct: 681 VEEIVYARQVYKQQQAN 697


>gi|296811676|ref|XP_002846176.1| helicase swr1 [Arthroderma otae CBS 113480]
 gi|238843564|gb|EEQ33226.1| helicase swr1 [Arthroderma otae CBS 113480]
          Length = 1652

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 20/167 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   +A     ++       L  L++             G 
Sbjct: 1345 PDKRLLQYDCGKLQQLDKLLRTLQAGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGS 1404

Query: 93   TLDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    + + +N   +I        S G G+NL  G + ++F+ L W+    +Q  +R
Sbjct: 1405 TKIEQRQLLTERFNSDTRILAFILSSRSGGLGINLT-GADTVIFYDLDWNPAMDKQCQDR 1463

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y L     + DE + +         D +L+
Sbjct: 1464 C-----HRIGQTRDVHIYRLDVGGILGDEELAEGHDEAGAAMDRVLD 1505


>gi|239610082|gb|EEQ87069.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 931

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLA--------------RL 84
            +E     E    KI+AL  I+     AP    +V   + S L               R+
Sbjct: 747 TNEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARI 806

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +   +D       N+    +L A    C  GLNL    N ++    WW     
Sbjct: 807 DGRMSSAK---RDAAMKALSNDPNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIE 862

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            Q ++R+      + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 863 DQAVDRV-----YRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTL 903


>gi|194744636|ref|XP_001954799.1| GF16563 [Drosophila ananassae]
 gi|190627836|gb|EDV43360.1| GF16563 [Drosophila ananassae]
          Length = 884

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 19/152 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--RTLD--------KDPCTIQEWN 105
           I+ LE ++       IIV   + + +  +++        TLD        +    ++++N
Sbjct: 714 IEKLEELLN-GTGDKIIVVSQWITFIGVIRQRLNDLCWSTLDFTGQLSAKERELVLRDFN 772

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L    ++ G GLNL    N ++   L W+ +  +Q  +RI      + G K+
Sbjct: 773 NPNNDKRVLLLSLSAGGVGLNLNV-ANHMLLVDLHWNPQLQKQAQDRI-----YRYGQKK 826

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             F+Y  + Q T+++ +      K  I  ++L
Sbjct: 827 PTFIYRFMCQETVEQRIKALQDYKLEIAKVVL 858


>gi|73946671|ref|XP_850159.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform a
            isoform 2 [Canis familiaris]
          Length = 1574

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1032 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1091

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1092 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1145

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1146 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|326500828|dbj|BAJ95080.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1731

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
              +++       L  L +             G T  D     ++ +N             
Sbjct: 930  HRVLIFSQMVRMLDILSEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLST 989

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   ++
Sbjct: 990  RAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQQDTVNIYRFVTCKSV 1043

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            +E +L+R + K  +  L++  L  E  
Sbjct: 1044 EEDILERAKKKMVLDHLVIQKLNAEGR 1070


>gi|326468579|gb|EGD92588.1| SNF2 family helicase [Trichophyton tonsurans CBS 112818]
          Length = 921

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 24/182 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE----KIKALEVIIEK---ANAAPIIVAYHFNS 79
           ++   C +L + A    E+ +  +V  +    KI+AL  I+     A     +V   + S
Sbjct: 718 AEIKDCSELVSPAADLGEDCNQVDVESDTLSSKIQALIKILTAKGQAAGTKTVVFSQWTS 777

Query: 80  DLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++               +  +  +D    +   + +  ++ A    C  GLNL   
Sbjct: 778 FLDLIEPHLVIHNINFARIDGKMNSAKRDAAMGKFSRDSECTVMLASLNVCSVGLNL-VA 836

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +V    WW      Q ++R+      + G  R   ++ L+ +N+I++ VL   + K 
Sbjct: 837 ANQVVLADSWWAPAIEDQAVDRV-----YRLGQTRPTTIWRLVMENSIEDRVLDIQKEKR 891

Query: 189 TI 190
            +
Sbjct: 892 EL 893


>gi|73946635|ref|XP_860206.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 16 [Canis familiaris]
          Length = 1552

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1028 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1087

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1088 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1141

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1142 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1181


>gi|307199491|gb|EFN80104.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Harpegnathos saltator]
          Length = 1948

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            + +   +++       L  L+          +     Q++      +      + G G+N
Sbjct: 1054 RGDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGAQQF------VFLLSTRAGGLGIN 1107

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++ +   W+     Q       +R  + G    V +Y  + +N+++E V Q  
Sbjct: 1108 L-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVTRNSVEERVTQVA 1161

Query: 185  RTKSTI 190
            + K  +
Sbjct: 1162 KRKMML 1167


>gi|195386402|ref|XP_002051893.1| GJ17250 [Drosophila virilis]
 gi|194148350|gb|EDW64048.1| GJ17250 [Drosophila virilis]
          Length = 5552

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2546 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2605

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2606 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2659

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2660 RNTYEREMFDKASMKLGLDKAVLQSM 2685


>gi|26330021|dbj|BAC28749.1| unnamed protein product [Mus musculus]
          Length = 1045

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 810 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 869

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 870 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 923

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 924 SVEERITQVAKKKMML 939


>gi|73946659|ref|XP_860605.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 27 [Canis familiaris]
          Length = 1540

 Score = 85.8 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1016 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1075

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1076 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1129

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1130 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1169


>gi|326927241|ref|XP_003209801.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like
            [Meleagris gallopavo]
          Length = 2782

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1099 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1158

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1159 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1212

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1213 RNSYEREMFDRASLKLGLDKAVLQSM 1238


>gi|326435418|gb|EGD80988.1| hypothetical protein PTSG_01570 [Salpingoeca sp. ATCC 50818]
          Length = 1332

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            EE     +    +K L+++++      +           R+    P     ++    I  
Sbjct: 943  EEDARVLLFSHSLKLLDIMMDVFRGRGV--------SYLRMDGNMPT----EERQEAINR 990

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G + +      +   G+ L     I++ F   W+  E +Q   R       + G  +
Sbjct: 991  FNAGTVDVFLLSTKTANTGITLTRANKIVI-FDPSWNPAEDRQAEHRAW-----RIGQNQ 1044

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  LI+  TI+EL+  R   K  +  + L  
Sbjct: 1045 DVEVVRLISSGTIEELMYARQLYKQQLAAVALEG 1078


>gi|325181644|emb|CCA16095.1| KIAA1416 protein putative [Albugo laibachii Nc14]
          Length = 1788

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEW--NEGKIPLL 112
           K     +++       L  ++              G     D    +  +   E K  ++
Sbjct: 774 KEGGHKVLIFSQMVRVLDIIEDYLRFLGHAYERLDGNIRGNDRQAAVNRFVKEEYKRFVM 833

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + +V F   W+ +   Q   R       + G   +V +Y LI 
Sbjct: 834 LLSTKAGGLGLNLT-AADTVVIFDSDWNPQNDLQAQAR-----AHRIGQTHSVKIYRLIT 887

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + T +  +  +   K  +   +L  +++E
Sbjct: 888 RKTYEMHMFHKASLKLGLDKAVLTHMRRE 916


>gi|331245961|ref|XP_003335615.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309314605|gb|EFP91196.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 894

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 18/152 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-CTIQEWNE--GKIPLL 112
           KA  + +++    +  L  L+              G+T  +D    I E+N+      + 
Sbjct: 351 KAKGSRVLIFSQMSRVLDILEDYCFFRQYEYCRIDGQTAHEDRIGAIDEYNKEGSSKFVF 410

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +I+V F   W+ +   Q ++R       + G K+ V+V+  + 
Sbjct: 411 LLTTRAGGLGINLTT-ADIVVLFDSDWNPQADLQAMDR-----AHRIGQKKQVYVFRFVT 464

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +N ++E VL+R   K  +  L++   +     
Sbjct: 465 ENAVEEKVLERAAQKLRLDQLVIQQGRSTVQQ 496


>gi|86171519|ref|XP_966228.1| Smarca-related protein [Plasmodium falciparum 3D7]
 gi|46361194|emb|CAG25058.1| Smarca-related protein [Plasmodium falciparum 3D7]
          Length = 2719

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLL 112
            +A    +++   F   L  L+     + +   R             I+E+N       + 
Sbjct: 1090 EAKMHKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIY 1149

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    N ++ +   W+     Q I+R       + G KR V V+ L+ 
Sbjct: 1150 LISTRAGGLGINLT-AANHVIMYDEDWNPFIDLQAIDR-----AHRIGQKREVNVWKLMT 1203

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E +  R   K  +  L++ 
Sbjct: 1204 EWTVEERMAFRREQKLKLDKLVVQ 1227


>gi|294656530|ref|XP_002770282.1| DEHA2D07942p [Debaryomyces hansenii CBS767]
 gi|199431539|emb|CAR65638.1| DEHA2D07942p [Debaryomyces hansenii]
          Length = 828

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              W+     KI+AL      +    +    IV   F S L  ++    +          
Sbjct: 650 GGEWR--SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQG 707

Query: 92  --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D           + +      + G  LNL    + +     WW+     Q ++
Sbjct: 708 SMSPQQRDNTIKYFMENTSVEVFLVSLKAGGVALNLCE-ASQVFLMDPWWNPSVEWQSMD 766

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G KR + +     +++I+  +++    K+T+    +N
Sbjct: 767 RV-----HRIGQKRPIRITRFCIEDSIESKIIELQEKKATMIHATIN 808


>gi|194899988|ref|XP_001979539.1| GG15997 [Drosophila erecta]
 gi|190651242|gb|EDV48497.1| GG15997 [Drosophila erecta]
          Length = 232

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS I
Sbjct: 1   MVIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 55

Query: 191 QDLLLNA--LKKETIH 204
           Q ++++    K +T+ 
Sbjct: 56  QRMVISGGNFKPDTLK 71


>gi|148227774|ref|NP_001080504.1| chromodomain helicase DNA binding protein 4 [Xenopus laevis]
 gi|28422180|gb|AAH46866.1| B230399n07 protein [Xenopus laevis]
          Length = 1893

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L+ ++ K   +   +++       L  L+          +    G T +     I 
Sbjct: 1042 KLFLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFMEHEGYKYERIDGGITGNMRQEAID 1101

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G G+NL    + +V +   W+     Q       +R  + G
Sbjct: 1102 RFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHNDIQA-----FSRAHRIG 1155

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              R V +Y  + + +++E + Q  + K  +
Sbjct: 1156 QNRKVMIYRFVTRASVEERITQVAKKKMML 1185


>gi|73946623|ref|XP_859981.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 10 [Canis familiaris]
          Length = 1456

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 932  ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 991

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 992  LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1045

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1046 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1085


>gi|328768354|gb|EGF78401.1| hypothetical protein BATDEDRAFT_90880 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1225

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 25/159 (15%)

Query: 54   EKIKALEV-IIE-----KANAAPI--IVAYHFNSDLARLQ-----------KAFPQGRTL 94
             KI AL   +IE     KA+  P+  ++   +   L+ ++           K   +    
Sbjct: 994  TKIIALIDSLIEVRSQTKASDLPVKSVIFSQWTKMLSLIEGPLLTHGFKFCKLVGKMVLS 1053

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +    ++   +  + ++     S G GLNL    + +     +W+    QQ I+R+   
Sbjct: 1054 SRSEAMLKFKTDPSVTIMLISLRSGGVGLNLT-AASRVYLMEPYWNPAVEQQAIDRV--- 1109

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               + G    V     I + +I+E +    R K  +   
Sbjct: 1110 --HRMGQTLPVVSIRFIVKGSIEENIQALQRKKLEMAKA 1146


>gi|320169022|gb|EFW45921.1| chromodomain-helicase-DNA-binding protein 7 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 2669

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            + ++  ++ G N  + + A+  +  +Q +   V  D          + +K L       N
Sbjct: 1204 EEKILGEIYGPNFYSTSPATLLLTLIQASGKLVLID----------KLLKRLRE-----N 1248

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++       L  LQ          +    G   +     I  +++      +    
Sbjct: 1249 GHKVLIFSQMVRCLDILQDYLTAMQYKFERIDGGIRGEARQAAIDRFSKPGSDSFVFLLC 1308

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++ +   W+ +   Q   R       + G  ++V +Y L+ +N+
Sbjct: 1309 TRAGGVGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQTKSVKIYRLLTRNS 1362

Query: 176  IDELVLQRLRTKSTIQDLLLNALKK 200
             +  +  +   K  +   +L  ++ 
Sbjct: 1363 YEREMFDKASMKLGLDQAVLQNIQS 1387


>gi|315045788|ref|XP_003172269.1| DNA repair protein RAD16 [Arthroderma gypseum CBS 118893]
 gi|311342655|gb|EFR01858.1| DNA repair protein RAD16 [Arthroderma gypseum CBS 118893]
          Length = 946

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 51  VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQ 102
               KI+ L   + +  +       IV   F S L     RL +A      LD     +Q
Sbjct: 770 TSSTKIEMLVYDLYKLRSKKRTNKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQ 829

Query: 103 EW-------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                    N     +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 830 RQRSIDYFMNNVDTEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 884

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +R   +  L  +++++  ++     K+ + +  +N  + E +
Sbjct: 885 -HRIGQRRPCVITRLCIEDSVESRMVLLQEKKANMINGTINKDQSEAL 931


>gi|193848542|gb|ACF22729.1| putative SWI/SNF related protein [Brachypodium distachyon]
          Length = 578

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 69  APIIVAYHFNSDLARL---------QKAFPQGRTLDKD-PCTIQEWNEGKIP--LLFAHP 116
           + +++       L  L         Q     G T   D    I+ +N+ +    +     
Sbjct: 50  SRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGSTGGDDCDAFIEAFNKPESEKFIFLLST 109

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    +I++ +   W+ +   Q        R  + G K+ V V+    ++TI
Sbjct: 110 RAGGLGINLTT-ADIVIIYDSDWNPQVDLQA-----QDRAHRIGQKKEVQVFRFCTEDTI 163

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E V++R   K  +  L++ 
Sbjct: 164 EEKVIERAYKKLVLDALVIQ 183


>gi|221483589|gb|EEE21901.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            GT1]
          Length = 1628

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDE---KIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             ++  ++AN    + +E    E       K + L+ ++ K       +++       L  
Sbjct: 980  LMQLRKIANHPYLFVDEYLVNEDLVRVAGKFECLDRMLPKLLHFKHKVLIFSQMTQVLDL 1039

Query: 84   LQKAF-----PQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
            + +          R      L +    ++E+N  ++   +      + G GLNLQ   + 
Sbjct: 1040 MAEYMHLRGYKYARLDGSVGLTERKERMEEFNNAEVDTMIFMLSTRAGGLGLNLQ-AADT 1098

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +V F   ++  +  Q +      R  + G  + V V+ L+  + ++E++L++   K  I 
Sbjct: 1099 VVLFDSDFNPHQDLQAM-----CRAHRLGQTKQVKVFRLVTISGVEEIILEKANRKLNID 1153

Query: 192  DLLLNA 197
             +++ A
Sbjct: 1154 QMVIQA 1159


>gi|206600048|ref|YP_002242122.1| gp65 [Mycobacterium phage Konstantine]
 gi|206287136|gb|ACI12481.1| gp65 [Mycobacterium phage Konstantine]
          Length = 685

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 76/215 (35%), Gaps = 26/215 (12%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYD------EEKHWKEVHDE 54
           KQY + +RE   ++   + I      ++  +C Q+AN  +  D      + K        
Sbjct: 433 KQYREIEREALINIGSEDEITVNGVLAEMTRCKQIANSCLQADGFNAMGDVKVRPIFPSN 492

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           K   +   + +  +N    IVA  F   L  L +   +            +  ++     
Sbjct: 493 KADWIYDFLSERISNGTKTIVASQFTGFLNVLSEELKKKGVGHYLYTGATQEPERKRIRK 552

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  +E    ++  +  S G  L L    ++++     W  ++ +Q+ +R       +   
Sbjct: 553 EFQSESGEMVVLLNTKSGGVSLTLDLADDVII-VDQTWIPDDQEQVEDR-----AHRVSR 606

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V ++ L +  TIDE +      +      +L 
Sbjct: 607 NHNVTIWNLASLGTIDEDIAVLNNERGEAISSILE 641


>gi|164448642|ref|NP_001106734.1| chromodomain-helicase-DNA-binding protein 1 [Bombyx mori]
 gi|269969346|sp|A9X4T1|CHD1_BOMMO RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|89213694|gb|ABD64154.1| CHD1 [Bombyx mori]
          Length = 1365

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 40/224 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++     ++G      N   +  KC    N A+    E            A+E 
Sbjct: 456 KNYSALRKG----VKGSINTFINIVIELKKC---CNHALLTKPEDFESRASLATSDAVEK 508

Query: 62  IIEKAN---------------AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK----- 96
           ++  +                   +++       L  L     ++ FP  R         
Sbjct: 509 LLRGSGKLLLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGEL 568

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 569 RKQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 623

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 624 -AHRIGQKNQVNIYRLVTARSVEEDIVERAKRKMVLDHLVIQRM 666


>gi|118096298|ref|XP_414088.2| PREDICTED: similar to chromatin remodeling factor CHROM1 [Gallus
            gallus]
          Length = 2891

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1192 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1251

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1252 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1305

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1306 RNSYEREMFDRASLKLGLDKAVLQSM 1331


>gi|315051734|ref|XP_003175241.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma
           gypseum CBS 118893]
 gi|311340556|gb|EFQ99758.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma
           gypseum CBS 118893]
          Length = 945

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 558 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNVVNAFNSDPRQFVFLI 617

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 618 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 671

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 672 TIEEIVYARQIYKQQQAN 689


>gi|114558334|ref|XP_001157776.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 783

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 182 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 232

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 233 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 292

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 293 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 346

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 347 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 383


>gi|73946627|ref|XP_860059.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 12 [Canis familiaris]
          Length = 1549

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1025 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1084

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1085 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1138

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1139 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1178


>gi|310793696|gb|EFQ29157.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1569

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 38/216 (17%)

Query: 17   GENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN------ 67
             + I   +  S     +QL         Y E    + +   KI   + +I  +       
Sbjct: 1094 DDKINKRDRGSLNNILMQLRKCLCHPFMYSEAVEERSLDPVKIH--QNLISASGKLMLLN 1151

Query: 68   ---------AAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQEWNEG- 107
                        +++   F   L  ++        Q R LD      +    I  +NE  
Sbjct: 1152 IMLPKLKERGHRVLIFSQFLDQLDIMEDFLNGLGFQHRRLDGKINSLEKQKHIDAFNEPG 1211

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +I        + G G+NL    + ++     ++  +  Q I R       + G K  V 
Sbjct: 1212 SEIFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQDIQAISR-----AHRIGQKNKVL 1265

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + L+ +N+ +E ++Q  R K  +  +L+ A+ +E 
Sbjct: 1266 CFQLMTKNSAEEKIMQIGRKKMALDHVLIEAMDEEG 1301


>gi|189199742|ref|XP_001936208.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983307|gb|EDU48795.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1026

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 23/158 (14%)

Query: 53   DEKIKAL-----EVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ 102
              K +AL     +   E+ NA  + V   F S L  +     +   P  R        ++
Sbjct: 855  SAKTQALLGHLKKTRKEEPNAKTV-VFSQFTSFLDLIEPALTRDHIPFLRFDGSISQKVR 913

Query: 103  EW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +  +L     + G GLNL    N +     WW      Q I+R+     
Sbjct: 914  AQILTEFTTSPRPYVLLLSLRAGGVGLNLTC-ANKVFMMDPWWSFAVEAQAIDRV----- 967

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G +R V V     Q +I+E +L+    K  I   L
Sbjct: 968  HRMGQEREVKVVRFCVQGSIEEKMLRIQERKKFIASSL 1005


>gi|154302623|ref|XP_001551721.1| hypothetical protein BC1G_09888 [Botryotinia fuckeliana B05.10]
 gi|150855377|gb|EDN30569.1| hypothetical protein BC1G_09888 [Botryotinia fuckeliana B05.10]
          Length = 1025

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT-IQEWN-EGKIPLLFAH 115
               +++  H    L  LQ          +F  G    +D    + ++N +    +    
Sbjct: 629 EGDKVLIFSHSVKLLRMLQHLFQSTSYNVSFLSGEMKYEDRQDTVDDFNSDPNQFIFLIS 688

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V F   W+     Q        R  + G  R V  + L++  T
Sbjct: 689 TKAGGVGLNIT-SANKVVIFDPNWNPSYDLQA-----QDRAYRIGQHRDVDSFRLVSAGT 742

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E+V  R   K    ++  NA K+ 
Sbjct: 743 IEEVVYARQIYKQQQANIGYNASKER 768


>gi|114625715|ref|XP_528720.2| PREDICTED: RAD26L hypothetical protein [Pan troglodytes]
          Length = 776

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 582 SGKMKVLQQLLNHCRINRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 641

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 642 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 695

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 696 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLH 727


>gi|62898724|dbj|BAD97216.1| chromodomain helicase DNA binding protein 1-like variant [Homo
           sapiens]
          Length = 702

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 199 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 250

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 251 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 310

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ ++  Q   R       + G 
Sbjct: 311 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQDDLQAAAR-----AHRIGQ 364

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 365 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 400


>gi|293351605|ref|XP_220602.5| PREDICTED: chromodomain helicase DNA binding protein 3 [Rattus
            norvegicus]
          Length = 2047

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1129 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1188

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1189 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1244

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1245 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1282


>gi|242010568|ref|XP_002426037.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510047|gb|EEB13299.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 853

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA------RLQKA----FPQGRTLDKDP 98
           V   K + L+ ++ K       +++   F   L       R++            +    
Sbjct: 665 VKSGKFQKLDEMLPKLKEENHRVLIFSQFVIMLDVMEEYLRIRGHKYLRLDGSTQVIIRQ 724

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +NE   I +      + G G+NL     +++   + ++    +Q  +R       
Sbjct: 725 ELIDAFNEDSSIFVFILSTRAGGLGINLTAADTVIIH-DMDFNPYNDKQAEDRC-----H 778

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V VY  I +NTI+E + Q    K  ++  +
Sbjct: 779 RVGQTKPVSVYKFIGKNTIEENIHQVALEKLNLEKKI 815


>gi|124358950|ref|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 2021

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1103 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1162

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1163 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1218

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1219 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1256


>gi|159109590|ref|XP_001705059.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
 gi|157433137|gb|EDO77385.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
          Length = 1367

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN---SDLAR------LQKAFPQ 90
           YD           K      +I   K N    ++   +    S L        +      
Sbjct: 645 YDLTVRSITALSSKYSLFMELITHIKNNNHRALIFCDYQIIFSMLEHLLSHNDIPYLRLD 704

Query: 91  GRTLDKDPCTI--QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G   D        + +N  K    L         GLNL  G N ++ F+  W L+  +Q 
Sbjct: 705 GTIADVSERDRICKSFNANKRYTALLISIKLGSMGLNLT-GANRVILFAPAWSLQVEEQA 763

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           I R       + G K  V VY L   NT++E ++ R   K+ I ++ L+  K  ++
Sbjct: 764 IAR-----AYRMGQKHNVVVYKLACINTLEEKMVVRQLQKAGIANVTLDDEKHRSV 814


>gi|324501030|gb|ADY40465.1| Transcription termination factor 2 [Ascaris suum]
          Length = 1277

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT- 100
              K+ AL   +++A       ++   + S L  ++    Q         G+ L KD    
Sbjct: 1071 SAKLVALFERLDQALALGDKCVIVSQWTSLLDIVEYHLKQRDVQYTSITGKVLTKDRQPR 1130

Query: 101  IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +N   G   ++     + G       GGN L    L W+    QQ  +RI      +
Sbjct: 1131 VESFNRVGGGARVMLLSL-TAGGVGLNLVGGNHLFLIDLHWNPALEQQACDRI-----YR 1184

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G  + VF++ +I   TI+E VL   ++K  +   +L     + +
Sbjct: 1185 MGQTKEVFIHKIICLGTIEERVLTLQQSKMALAKGVLEGAASKKL 1229


>gi|81884744|sp|Q6DIC0|SMCA2_MOUSE RecName: Full=Probable global transcription activator SNF2L2;
            AltName: Full=ATP-dependent helicase SMARCA2; AltName:
            Full=BRG1-associated factor 190B; Short=BAF190B; AltName:
            Full=Protein brahma homolog; AltName: Full=SNF2-alpha;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            2
 gi|49523317|gb|AAH75641.1| Smarca2 protein [Mus musculus]
          Length = 1577

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1053 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1112

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1113 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1166

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1167 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|73946663|ref|XP_860667.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 29 [Canis familiaris]
          Length = 1547

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1023 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1082

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1083 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1136

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|73946419|ref|XP_533502.2| PREDICTED: similar to RAD26L hypothetical protein [Canis
           familiaris]
          Length = 1402

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   I++       L  LQ+             G T  ++    
Sbjct: 502 SGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKI 561

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 562 VKEFNSTQDVNICLVSTMAGGVGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 615

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 616 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLH 647


>gi|70568940|dbj|BAE06321.1| ATRX protein [Ciona intestinalis]
          Length = 1086

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 23/205 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII- 63
            +   E          ++   + K    L +   +    ++          +  +E I+ 
Sbjct: 635 KELWFEKVMPSDNLLYDSVEMSGKITLLLSILKSSTMMGDKVVLFSQSLLTLDLIEDILR 694

Query: 64  ------EKANAAP--IIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPL 111
                      +P  + +   +   D  R+  +       ++    I ++N     +  L
Sbjct: 695 YVTMDGSDNTRSPTGVRIMKWYKDVDYYRMDGSTKN----ERRKTIIDQFNNESDTRCRL 750

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G G+NL  G N  + F   W+     Q I RI      + G  +  ++Y  I
Sbjct: 751 MLVSTRAGGIGINL-VGANRAIVFDASWNPTHDVQSIFRI-----YRFGQTKPCYIYRFI 804

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           AQ T++E +  R   K ++   +++
Sbjct: 805 AQGTMEEKIYDRQVVKQSLASRVVD 829


>gi|317026301|ref|XP_001389337.2| chromatin remodeling complex subunit (Chd3) [Aspergillus niger CBS
           513.88]
          Length = 1282

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTI 101
            K + LE+++ K       +++   F  +L  ++                    +   TI
Sbjct: 744 AKFQLLELMLPKLKNRGHRVLIFSQFLENLDIIEDFLEGVGLTYLRLDGRMSSLEKQKTI 803

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N  + P         S G G+NL    + ++     ++  +  Q + R       + 
Sbjct: 804 DAYNAEESPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQDMQALSR-----AHRI 857

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K  V V+ L+ + + +E ++Q  + K  +  +L++ +  E
Sbjct: 858 GQKNKVLVFQLMTRASAEEKIMQIGKKKMVLDHVLIDRMVSE 899


>gi|195497929|ref|XP_002096309.1| GE25130 [Drosophila yakuba]
 gi|194182410|gb|EDW96021.1| GE25130 [Drosophila yakuba]
          Length = 282

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS IQ
Sbjct: 3   VIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQ 57

Query: 192 DLLLNA--LKKETIH 204
            ++++    K +T+ 
Sbjct: 58  RMVISGGNFKPDTLK 72


>gi|74007793|ref|XP_549075.2| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency complementation group 6 - like [Canis
           familiaris]
          Length = 1268

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGRTLDKDPCTIQE-- 103
             K+  L  ++ +        +V       L  +++      F   R        ++   
Sbjct: 483 SGKMIFLIELLRRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREK 542

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +        G GL L      +V F   W+     Q ++R+      +
Sbjct: 543 RIHLFQQNKDYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRV-----YR 596

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K  + VY LI   T++E + +R   K ++
Sbjct: 597 IGQKENIVVYRLITCGTVEEKIYRRQVFKDSL 628


>gi|73997426|ref|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 15 [Canis familiaris]
          Length = 1963

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|7022541|dbj|BAA91637.1| unnamed protein product [Homo sapiens]
          Length = 831

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 295 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 346

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 347 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 406

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 407 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 460

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 461 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|312069902|ref|XP_003137898.1| SNF2 family domain-containing protein [Loa loa]
 gi|307766934|gb|EFO26168.1| SNF2 family domain-containing protein [Loa loa]
          Length = 840

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  +        A  G GLNL  G +I++F    W+  +  Q ++R       + G + A
Sbjct: 637 NIPECKTTLVFTAIGGEGLNL-IGADIVIFLEHDWNPVKDLQAMDR-----AHRIGQRCA 690

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V VY LI + +I++ +++  + K+   + L+ A
Sbjct: 691 VNVYRLITEGSIEQKIMRLQKFKTNTANALVGA 723


>gi|218680317|ref|ZP_03528214.1| non-specific serine/threonine protein kinase [Rhizobium etli CIAT
           894]
          Length = 297

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
            A  +V   +      + +              G   +K P  ++ + N+    +     
Sbjct: 13  EAKAVVFSQWTRTHEIVIRRLKARGIGYVSLHGGVPSEKRPELVERFRNDPDCRVFL-ST 71

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLNLQ   + LV   L W+    +Q I RI      + G  R V V   +++ TI
Sbjct: 72  EAGSAGLNLQN-ASTLVNMDLPWNPAILEQRIARI-----HRIGQARPVQVINFVSKGTI 125

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L  L  K ++   +L+ 
Sbjct: 126 EEGMLSVLAFKRSLSAGILDG 146


>gi|237841199|ref|XP_002369897.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211967561|gb|EEB02757.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 1606

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDE---KIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             ++  ++AN    + +E    E       K + L+ ++ K       +++       L  
Sbjct: 980  LMQLRKIANHPYLFVDEYLVNEDLVRVAGKFECLDRMLPKLLHFKHKVLIFSQMTQVLDL 1039

Query: 84   LQKAF-----PQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
            + +          R      L +    ++E+N  ++   +      + G GLNLQ   + 
Sbjct: 1040 MAEYMHLRGYKYARLDGSVGLTERKERMEEFNNAEVDTMIFMLSTRAGGLGLNLQ-AADT 1098

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +V F   ++  +  Q +      R  + G  + V V+ L+  + ++E++L++   K  I 
Sbjct: 1099 VVLFDSDFNPHQDLQAM-----CRAHRLGQTKQVKVFRLVTISGVEEIILEKANRKLNID 1153

Query: 192  DLLLNA 197
             +++ A
Sbjct: 1154 QMVIQA 1159


>gi|169624246|ref|XP_001805529.1| hypothetical protein SNOG_15379 [Phaeosphaeria nodorum SN15]
 gi|111056192|gb|EAT77312.1| hypothetical protein SNOG_15379 [Phaeosphaeria nodorum SN15]
          Length = 1058

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 51   VHDEKIKALE-VIIEKANAA---PIIVAYHFNSDLA----RLQKAFPQGRTLDK------ 96
                KI+ L   + +  +       IV   F S L     RL++A      LD       
Sbjct: 883  TSSTKIEMLVYDLYKLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAM 942

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +I  +     + +      + G  LNL     + +    WW+     Q  +R     
Sbjct: 943  RQKSIDHFMTNPDVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC---- 997

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G KR   +  L  +++++  ++     K+ +
Sbjct: 998  -HRIGQKRPCVITRLCIEDSVESRMVALQEKKAAM 1031


>gi|56800176|emb|CAI35991.1| chromodomain helicase DNA binding protein 3 [Mus musculus]
 gi|56800269|emb|CAI35246.1| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 2055

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1103 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1162

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1163 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1218

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1219 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1256


>gi|73946611|ref|XP_859774.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 4 [Canis familiaris]
          Length = 1556

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1032 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1091

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1092 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1145

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1146 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|322799754|gb|EFZ20959.1| hypothetical protein SINV_16592 [Solenopsis invicta]
          Length = 529

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPCTIQEWNEG-----KI 109
           + +   +++       L  L+        +   +D      +    I  +N       + 
Sbjct: 329 RDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAIDRFNAPGKYCAQQ 388

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+NL    + ++ +   W+     Q       +R  + G    V +Y 
Sbjct: 389 FVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYR 442

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
            + +N+++E V Q  + K  +
Sbjct: 443 FVTRNSVEERVTQVAKRKMML 463


>gi|213402947|ref|XP_002172246.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000293|gb|EEB05953.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
          Length = 749

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 28/212 (13%)

Query: 5   HKFQRELYCD----LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            KF ++   +         +   N    + + +Q        D   +       K + L+
Sbjct: 404 DKFWKDRTLENEKTFPLSTLTELNCLCNSTRLIQ---HQENTDLSLNDLIASSSKFEFLK 460

Query: 61  VIIEKANAAPI--IVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQEWNEGK 108
            ++ +   + +  ++   F   L  ++              G T  +     + ++N   
Sbjct: 461 SLLLEFKNSQLKCVIVSQFTETLNLIEILLKHLLITHCRLDGSTPTNTRQSLVDQFNCST 520

Query: 109 ---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      S G GLNL  G N L+ F   W+     Q + RI      + G  R+V
Sbjct: 521 YEHLSVFLLSNKSGGAGLNL-VGANRLILFEPSWNPAYDLQALGRI-----YRYGQNRSV 574

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y L++   +DE +  R  TK+ + +  +++
Sbjct: 575 LIYTLLSTGMLDEQIYIRQHTKTGLSNAFMDS 606


>gi|42569923|ref|NP_182025.2| transcription regulatory protein SNF2, putative [Arabidopsis
           thaliana]
 gi|330255398|gb|AEC10492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 38/222 (17%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKH 47
           K Y    ++EL    +L        N  S     +QL  A    Y         ++E +H
Sbjct: 306 KIYTSILRKELPGLLELSSG---GSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEH 362

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTI 101
             +    K+  L+ ++++ +     +++     S L  LQ      R     LD      
Sbjct: 363 LVQ-ASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAE 421

Query: 102 QEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           + +              +      + G GLNL    + ++F+   W+ +  +Q ++R   
Sbjct: 422 ERFAAIKNFSVDGSNAFVFMISTRAGGVGLNL-VAADTVIFYEQDWNPQVDKQALQR--- 477

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G    V    L+ +++++E++L+R   K  +   ++
Sbjct: 478 --AHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 517


>gi|325095596|gb|EGC48906.1| transcription factor [Ajellomyces capsulatus H88]
          Length = 929

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFP-----------QGRTLD 95
           E    KI+AL  I+     AP    +V   + S L  ++               +  +  
Sbjct: 753 ETTSSKIQALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARIDGKMSSAK 812

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    +L A    C  GLNL    N ++    WW      Q ++R+    
Sbjct: 813 RDAAMNALSNDSNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV---- 867

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 868 -YRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTL 901


>gi|302795003|ref|XP_002979265.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
 gi|300153033|gb|EFJ19673.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
          Length = 684

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLF 113
           K+    +++       L  L+    +            +  D+    I    EG   +  
Sbjct: 463 KSRGHRVLIFSQMTKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITFSREG--FVFL 520

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 521 LSTRAGGLGINLT-SADTAIIYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATA 574

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           ++++  +L+   +K  ++ L++N
Sbjct: 575 HSVECRMLKVANSKLQLETLVIN 597


>gi|73946645|ref|XP_860367.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 21 [Canis familiaris]
          Length = 1553

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
             Y   Q +      G   +    + +     +QL     +    +H + +          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIETLICKKNFNIKT 1022

Query: 52   ------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL 94
                     K + L+ I+   +A    +++     S +  ++  F           G T 
Sbjct: 1023 FRSLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1082

Query: 95   DKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +D   + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q     
Sbjct: 1083 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA---- 1137

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1138 -QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1182


>gi|67467805|ref|XP_649984.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56466523|gb|EAL44598.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1247

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
              K+  L+ ++ K  A+   +++       L  ++K             G    +D   
Sbjct: 617 SSGKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYERLDGSIKSEDRQN 676

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +   ++   +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 677 AIDRFMNPEMNRFIFLLCTRAGGFGINLSE-ADTVIIFDSDWNPQNDLQAQARC-----H 730

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K+ V VY L+++NT +  + +R   K  +   +L
Sbjct: 731 RIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVL 768


>gi|291405109|ref|XP_002719030.1| PREDICTED: chromodomain helicase DNA binding protein 3-like
            [Oryctolagus cuniculus]
          Length = 1910

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1046 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1105

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1106 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1161

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1162 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1199


>gi|281349310|gb|EFB24894.1| hypothetical protein PANDA_007733 [Ailuropoda melanoleuca]
          Length = 1561

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1023 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1082

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1083 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1136

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|281337385|gb|EFB12969.1| hypothetical protein PANDA_010298 [Ailuropoda melanoleuca]
          Length = 1583

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|226706292|sp|B0R0I6|CHD8_DANRE RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8
          Length = 2511

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K+  L+ ++ +  A    +++       L  L+      R L          +     I 
Sbjct: 1171 KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1230

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +++      +      + G G+NL    +  V F   W+ +   Q   R       + G
Sbjct: 1231 RFSKPDSDRFVFLLCTRAGGLGINLT-AADTCVIFDSDWNPQNDLQAQARC-----HRIG 1284

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1285 QSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1322


>gi|158420731|ref|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 isoform 3 [Homo sapiens]
          Length = 2059

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1110 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1169

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1170 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1225

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1226 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263


>gi|149611552|ref|XP_001521337.1| PREDICTED: similar to SMARCA4, partial [Ornithorhynchus anatinus]
          Length = 708

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 313 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 372

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 373 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 426

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 427 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 466


>gi|126309162|ref|XP_001369227.1| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            [Monodelphis domestica]
          Length = 2131

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1219 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1278

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1279 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1334

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1335 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1372


>gi|162318864|gb|AAI56473.1| Chromodomain helicase DNA binding protein 3 [synthetic construct]
          Length = 2045

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1096 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1155

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1156 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1211

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1212 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1249


>gi|52630322|ref|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 isoform 2 [Homo sapiens]
 gi|119610520|gb|EAW90114.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
            sapiens]
 gi|119610522|gb|EAW90116.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
            sapiens]
          Length = 1966

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|2645433|gb|AAB87383.1| CHD3 [Homo sapiens]
          Length = 1944

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|3298562|gb|AAC39923.1| zinc-finger helicase [Homo sapiens]
          Length = 2000

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|73946621|ref|XP_859943.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 9 [Canis familiaris]
          Length = 1532

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1008 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1067

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1068 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1121

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1122 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1161


>gi|52630326|ref|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Homo sapiens]
 gi|88911273|sp|Q12873|CHD3_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 3;
            Short=CHD-3; AltName: Full=ATP-dependent helicase CHD3;
            AltName: Full=Mi-2 autoantigen 240 kDa protein; AltName:
            Full=Mi2-alpha; AltName: Full=Zinc finger helicase;
            Short=hZFH
 gi|119610521|gb|EAW90115.1| chromodomain helicase DNA binding protein 3, isoform CRA_b [Homo
            sapiens]
          Length = 2000

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|324499809|gb|ADY39928.1| Chromodomain-helicase-DNA-binding protein 3 [Ascaris suum]
          Length = 1844

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
            E         K   L+ ++ K       +++       L  L         +     G  
Sbjct: 937  EGTALIKASGKFILLQKMLRKLKEQGHRVLIFSQMTKMLDVLEDFCENEGYKYERIDGSI 996

Query: 94   LDKDPCT-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     I  +N       +      + G G+NL    + ++ +   W+     Q    
Sbjct: 997  TGQARQDAIDRFNAPNAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1052

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +R  + G +  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1053 --FSRAHRIGQQNKVLIYRFVTRNSVEERITSVAKKKMLLTHLVVRA 1097


>gi|301614708|ref|XP_002936822.1| PREDICTED: DNA excision repair protein ERCC-6-like [Xenopus
           (Silurana) tropicalis]
          Length = 1361

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 15/136 (11%)

Query: 64  EKANAAPIIVAYHFNSD-LARLQK-------AFPQGRTLDKDPCTIQEWNEGKI-PLLFA 114
           E+ +   +        D + R+ +              L +    I  +       +L  
Sbjct: 478 EEGHRTLVFSQSRKMLDMIDRILQNKNFKVMRIDGTVALPEREKRISIFQSNNNYSVLLL 537

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL L    + +V F   W+     Q ++R       + G +  V +Y LI   
Sbjct: 538 TTQVGGVGLTLT-AADRVVIFDPSWNPATDAQAVDR-----AYRIGQQENVVIYRLITCG 591

Query: 175 TIDELVLQRLRTKSTI 190
           T++E + +R   K ++
Sbjct: 592 TVEEKIYRRQIFKESL 607


>gi|73946625|ref|XP_860020.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 11 [Canis familiaris]
          Length = 1547

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 31/220 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQL---ANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +        +     +QL    N    +   + W+       
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEMWEVSAELYR 1022

Query: 53   -DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1023 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1082

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1083 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1136

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|258574887|ref|XP_002541625.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901891|gb|EEP76292.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1041

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 18/159 (11%)

Query: 51  VHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
           V   KI+ L  I+++       IV   F S L +++            +  G   D    
Sbjct: 789 VSSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLKGAGIGYARYDGGMRNDLREA 848

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++    N     +L     +   GLNL    + +V    +W+    +Q I+R+      +
Sbjct: 849 SLDRLRNSSSTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HR 902

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 V VY +  ++T++  +L     K  +    +  
Sbjct: 903 LNQTVDVKVYKMTIRDTVEARILDLQERKRELASATIEG 941


>gi|194224801|ref|XP_001490809.2| PREDICTED: SWI/SNF related, matrix associated, actin dependent
            regulator of chromatin, subfamily a, member 2 [Equus
            caballus]
          Length = 1548

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1006 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1065

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1066 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1119

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1120 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1159


>gi|73946647|ref|XP_860406.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 22 [Canis familiaris]
          Length = 1552

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1028 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1087

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1088 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1141

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1142 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1181


>gi|157821521|ref|NP_001101267.1| chromodomain-helicase-DNA-binding protein 6 [Rattus norvegicus]
 gi|149043033|gb|EDL96607.1| chromodomain helicase DNA binding protein 6 (predicted) [Rattus
           norvegicus]
          Length = 2698

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 796 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 855

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 856 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 909

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 910 NSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|73946631|ref|XP_860127.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 14 [Canis familiaris]
          Length = 1554

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1030 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1089

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1090 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1143

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1144 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1183


>gi|73946667|ref|XP_860732.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 31 [Canis familiaris]
          Length = 1548

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1022 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1081

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1082 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1135

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1136 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1175


>gi|73946661|ref|XP_860636.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 28 [Canis familiaris]
          Length = 1549

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1025 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1084

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1085 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1138

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1139 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1178


>gi|73946673|ref|XP_860834.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 33 [Canis familiaris]
          Length = 1536

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1012 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1071

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1072 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1125

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1126 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1165


>gi|74149099|dbj|BAE32198.1| unnamed protein product [Mus musculus]
          Length = 895

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 672 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 731

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 732 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 785

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 786 SVEERITQVAKKKMML 801


>gi|297699953|ref|XP_002827042.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 3-like [Pongo abelii]
          Length = 1945

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1000 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1059

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1060 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1115

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1116 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1153


>gi|223462579|gb|AAI50807.1| Chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2711

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 796 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 855

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 856 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 909

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 910 NSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|195473411|ref|XP_002088987.1| GE10215 [Drosophila yakuba]
 gi|194175088|gb|EDW88699.1| GE10215 [Drosophila yakuba]
          Length = 166

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  ++     I ++N +  I +      + G G+NL      ++   + ++    +
Sbjct: 19  RLDGSTAVNVRQDLITDFNGDDNIFVFLLSTKAGGVGINLTAADTCVIH-DIDFNPYNDK 77

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           Q  +R       + G +R V +Y LI+++TI+E +L     K  ++  + +  K E 
Sbjct: 78  QAEDRC-----HRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 129


>gi|119596385|gb|EAW75979.1| chromodomain helicase DNA binding protein 6, isoform CRA_f [Homo
           sapiens]
          Length = 1856

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 40/235 (17%)

Query: 2   KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWKEV 51
           K Y    ++   +           N  +  ++  +  N     +EEK        H  + 
Sbjct: 32  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINEEKILEDFRKTHSPDA 91

Query: 52  HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK-- 96
            D +++A+        +I+K      A    +++       L  L+    Q R T ++  
Sbjct: 92  PDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERID 151

Query: 97  -------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      I  + +      +      + G G+NL    +  + F   W+ +   Q 
Sbjct: 152 GRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQA 210

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             R       + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 211 QARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 260


>gi|119596386|gb|EAW75980.1| chromodomain helicase DNA binding protein 6, isoform CRA_g [Homo
           sapiens]
          Length = 1875

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 40/235 (17%)

Query: 2   KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWKEV 51
           K Y    ++   +           N  +  ++  +  N     +EEK        H  + 
Sbjct: 32  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINEEKILEDFRKTHSPDA 91

Query: 52  HDEKIKALEV------IIEK------ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK-- 96
            D +++A+        +I+K      A    +++       L  L+    Q R T ++  
Sbjct: 92  PDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERID 151

Query: 97  -------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      I  + +      +      + G G+NL    +  + F   W+ +   Q 
Sbjct: 152 GRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQA 210

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             R       + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 211 QARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 260


>gi|58219008|ref|NP_001010895.1| RAD26L hypothetical protein [Homo sapiens]
 gi|74756405|sp|Q5T890|RAD26_HUMAN RecName: Full=Putative DNA repair and recombination protein
           RAD26-like
 gi|55957855|emb|CAI16517.1| chromosome 9 open reading frame 102 [Homo sapiens]
 gi|187954497|gb|AAI40703.1| Chromosome 9 open reading frame 102 [Homo sapiens]
          Length = 712

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 518 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 577

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 578 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 631

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 632 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLH 663


>gi|320461545|ref|NP_001189381.1| chromodomain-helicase-DNA-binding protein 8 [Danio rerio]
          Length = 2549

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K+  L+ ++ +  A    +++       L  L+      R L          +     I 
Sbjct: 1209 KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1268

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +++      +      + G G+NL    +  V F   W+ +   Q   R       + G
Sbjct: 1269 RFSKPDSDRFVFLLCTRAGGLGINLT-AADTCVIFDSDWNPQNDLQAQARC-----HRIG 1322

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1323 QSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1360


>gi|224052526|ref|XP_002188227.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Taeniopygia
           guttata]
          Length = 1449

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGG 129
           + V Y   S L            +      + ++NE K I L        G G+NL  G 
Sbjct: 831 VFVRYRNYSYL-----RMDGTTAVASRQPLVTKYNEDKSIFLFLLTTRVGGIGVNL-VGA 884

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ +   W+     Q  ER       + G K+ V VY L+   TI+E +  R   K  
Sbjct: 885 DRVIIYDPDWNPSVDTQARERAW-----RIGQKKEVTVYRLLTAGTIEEKIYHRQIFKQF 939

Query: 190 IQDLLLNALK 199
           + + +L   K
Sbjct: 940 LTNRVLKDPK 949


>gi|218202221|gb|EEC84648.1| hypothetical protein OsI_31541 [Oryza sativa Indica Group]
          Length = 844

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 618 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 677

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 678 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 731

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 732 HSVEGRIIKKAFGKLRLEHVVI 753


>gi|195382577|ref|XP_002050006.1| GJ20429 [Drosophila virilis]
 gi|194144803|gb|EDW61199.1| GJ20429 [Drosophila virilis]
          Length = 1034

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
           V Y+F      L+K      +  +    + E+N  + I L      +   G+NL  G N 
Sbjct: 540 VLYNF------LKKCLDGSTSSQERERLVNEFNANRNIKLFLISTRAGSLGINLT-GANR 592

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F   W+     Q + RI      + G  +  +VY ++    +++ +  R   K  + 
Sbjct: 593 VIIFDASWNPCHDTQAVYRI-----YRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMS 647

Query: 192 DLLLN 196
           D +++
Sbjct: 648 DRIVD 652


>gi|77404417|ref|NP_796198.1| chromodomain-helicase-DNA-binding protein 9 [Mus musculus]
 gi|76782010|gb|AAZ73184.2| ciprofibrate-bound protein PRIC320 [Mus musculus]
          Length = 2869

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|73946653|ref|XP_860507.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 24 [Canis familiaris]
          Length = 1545

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1021 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1080

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1081 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1134

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1174


>gi|73946665|ref|XP_860704.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 30 [Canis familiaris]
          Length = 1533

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1007 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1066

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1067 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1120

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1121 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1160


>gi|73946669|ref|XP_860771.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 32 [Canis familiaris]
          Length = 1586

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1032 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1091

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1092 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1145

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1146 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|326479941|gb|EGE03951.1| hypothetical protein TEQG_02985 [Trichophyton equinum CBS 127.97]
          Length = 561

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 24/182 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE----KIKALEVIIEK---ANAAPIIVAYHFNS 79
           ++   C +L + A    E+ +  +V  +    KI+AL  I+     A     +V   + S
Sbjct: 358 AEIKDCSELVSPAADLGEDCNQVDVESDTLSSKIQALIKILTAKGQAAGTKTVVFSQWTS 417

Query: 80  DLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++               +  +  +D    +   + +  ++ A    C  GLNL   
Sbjct: 418 FLDLIEPHLVIHNINFARIDGKMNSAKRDAAMGKFSRDSECTVMLASLNVCSVGLNL-VA 476

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +V    WW      Q ++R+      + G  R   ++ L+ +N+I++ VL   + K 
Sbjct: 477 ANQVVLADSWWAPAIEDQAVDRV-----YRLGQTRPTTIWRLVMENSIEDRVLDIQKEKR 531

Query: 189 TI 190
            +
Sbjct: 532 EL 533


>gi|256075464|ref|XP_002574039.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
 gi|238659232|emb|CAZ30272.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
          Length = 776

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 67  NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDK-DPCTIQEWNEGKI--PLLF 113
           N   ++V  +F   L  L+K              G+  +K     +Q  N+ K    +L 
Sbjct: 468 NDRLVLV-SNFTQTLNLLEKLCNLVTGQPSLRLDGQITNKQRAEVVQRINDPKSHDRILL 526

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL  G N L+ F + W+     Q + RI      + G  R+V +Y L+  
Sbjct: 527 LSSRAGGVGLNL-IGANYLILFDMDWNPANDAQAMARIW-----RPGQSRSVNLYRLVTA 580

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           + ++E + QR   K  +    L
Sbjct: 581 SGMEERIFQRQAAKLALTSQTL 602


>gi|109113159|ref|XP_001110923.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform 1
            [Macaca mulatta]
          Length = 1947

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1033 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1092

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1093 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1148

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1149 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1186


>gi|61742812|ref|NP_775544.2| chromodomain helicase DNA binding protein 6 [Mus musculus]
 gi|126540714|emb|CAM46169.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2711

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 796 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 855

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 856 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 909

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 910 NSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|73946675|ref|XP_860860.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 34 [Canis familiaris]
          Length = 1548

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1024 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1083

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1084 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1137

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1138 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1177


>gi|260815495|ref|XP_002602508.1| hypothetical protein BRAFLDRAFT_93815 [Branchiostoma floridae]
 gi|229287819|gb|EEN58520.1| hypothetical protein BRAFLDRAFT_93815 [Branchiostoma floridae]
          Length = 1002

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
           F      +          +     +  +NE   P  L      + G GLNLQ   + +V 
Sbjct: 453 FQHIEVCVTCCLDGTTKSEDRSQLLHLFNEKDSPYFLFLLSTRAGGLGLNLQ-AADTVVI 511

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+  +  Q        R  + G K  V V  L+  N+++E +L   R K  + + +
Sbjct: 512 FDSDWNPHQDLQA-----QDRAHRIGQKSEVRVLRLMTINSVEEKILAAARFKLNVDEKV 566

Query: 195 LNA 197
           + A
Sbjct: 567 IQA 569


>gi|148678548|gb|EDL10495.1| mCG140617 [Mus musculus]
          Length = 1826

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 873  EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 932

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 933  TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 988

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 989  --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1026


>gi|126643947|ref|XP_001388153.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
 gi|126117230|gb|EAZ51330.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
          Length = 807

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 2   KQYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + + E Y   L    I    S    VK   L       DE          K+K + 
Sbjct: 599 KGYSRIKVEQYITQLCDYEIHQLVSRLLIVKNSPLLERFRIDDE---LIINGSCKLKKMN 655

Query: 61  VIIEKA---NAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEW 104
            II+     N    ++  H    L  +++                    + +    I+++
Sbjct: 656 EIIQSTVIENKEKCLIFCHHTMLLDIIEEYIKIKYNIPDFYLRLDGTTPILERQNMIEKF 715

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              ++PL      + G GLNL    + ++   L ++ +  +Q  +R+      + G  + 
Sbjct: 716 QTTQVPLFLLSTKAAGQGLNLTVASS-VIMMDLDYNPQIEKQAEDRV-----HRIGQSKQ 769

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           V ++ L+ ++TI+E +    ++K T+ + 
Sbjct: 770 VKIFKLVCKDTIEENIFNCCQSKLTLDNA 798


>gi|116235005|dbj|BAF34942.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group]
 gi|116235009|dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group]
 gi|222641670|gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group]
          Length = 845

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 619 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 678

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 679 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 732

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 733 HSVEGRIIKKAFGKLRLEHVVI 754


>gi|62530236|gb|AAX85375.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
 gi|62530238|gb|AAX85376.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1925

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1007 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1066

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1067 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1122

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1123 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1160


>gi|62530240|gb|AAX85377.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1924

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1006 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1065

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1066 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1121

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1122 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1159


>gi|62530242|gb|AAX85378.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1927

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1009 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1068

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1069 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1124

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1125 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1162


>gi|225431683|ref|XP_002264260.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296088517|emb|CBI37508.3| unnamed protein product [Vitis vinifera]
          Length = 1043

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
           ++  +        +  L+ +I +     +++       L  +++             G T
Sbjct: 680 EKNDNVSSKMSFILALLDTLIPE--GHNVLIFSQTRKMLNLIEELLISNGYKFLRIDGTT 737

Query: 94  L-DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +     + ++ +G   P+        G GL L    + ++     W+     Q ++R 
Sbjct: 738 KANDRVKIVNDFQDGVGAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR- 795

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 + G  + V VY L+   TI+E + ++   K  +
Sbjct: 796 ----AYRIGQTKDVIVYRLMTCGTIEEKIYRKQIFKGGL 830


>gi|211853152|gb|AAI68553.1| chd9 protein [Xenopus (Silurana) tropicalis]
          Length = 2753

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+              GR   +     I  +++      + 
Sbjct: 1061 KAGGHKVLIFSQMVRCLDILEDYLMHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1120

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1121 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1174

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1175 RNSYEREMFDRASLKLGLDKAVLQSM 1200


>gi|51536001|dbj|BAD38081.1| putative chromatin complex subunit A101 [Oryza sativa Japonica
           Group]
          Length = 846

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN--EGKIPLLF 113
           A    +++   +   L  ++                  L++    I E+N     + +  
Sbjct: 620 ARKHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFI 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + +   W+ +   Q ++R       + G  R V VY L   
Sbjct: 680 LSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----HRIGQTRPVHVYRLATS 733

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           ++++  ++++   K  ++ +++
Sbjct: 734 HSVEGRIIKKAFGKLRLEHVVI 755


>gi|291383503|ref|XP_002708309.1| PREDICTED: RAD26L hypothetical protein-like [Oryctolagus cuniculus]
          Length = 1644

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 495 SGKMKVLQQLLNHCRRNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 554

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q I+R       + 
Sbjct: 555 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAIDR-----AYRI 608

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 609 GQCRDVKVLRLISLGTVEEIMYLRQLYKQQLH 640


>gi|148674355|gb|EDL06302.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2695

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 793 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 852

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 853 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 906

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 907 NSYEREMFDKASLKLGLDKAILQDINRKG 935


>gi|255089631|ref|XP_002506737.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226522010|gb|ACO67995.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1587

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 29/168 (17%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K++ L+ ++ +  A     ++       L  L+          +    G T       
Sbjct: 735 SGKLQLLDKLLPRLKAGGHRALIFSQMTRVLDVLEDYCRNRGHSYERLDGGVTGRARQAA 794

Query: 101 IQEWNEGKIP-----------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           I  +  G              L      + G G+NL    + ++ F   W+ +   Q + 
Sbjct: 795 IDRFCCGSNATDAGHSDEGAFLFLLSTRAGGQGINL-VAADTVIVFDSDWNPQNDAQALA 853

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R       + G  + V VY L+ + T +  +L R   K  ++  + ++
Sbjct: 854 R-----AHRIGQTKPVQVYRLVMRATYERDMLDRAAMKLGLEQAIFSS 896


>gi|40215423|gb|AAR82736.1| SD21488p [Drosophila melanogaster]
          Length = 1645

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 822 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 881

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 882 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 941 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|62530244|gb|AAX85379.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530246|gb|AAX85380.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530248|gb|AAX85381.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530250|gb|AAX85382.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
          Length = 1959

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1007 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1066

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1067 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1122

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1123 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1160


>gi|123241655|emb|CAI35987.2| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 1885

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1009 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1068

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1069 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1124

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1125 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1162


>gi|148679122|gb|EDL11069.1| mCG141427 [Mus musculus]
          Length = 2699

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|109113157|ref|XP_001111066.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform 2
            [Macaca mulatta]
          Length = 1981

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1033 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1092

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1093 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1148

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1149 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1186


>gi|301766196|ref|XP_002918518.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like,
           partial [Ailuropoda melanoleuca]
          Length = 2710

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 790 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 849

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 850 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 903

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 904 NSYEREMFDKASLKLGLDKAVLQDINRKG 932


>gi|291409634|ref|XP_002721122.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Oryctolagus
           cuniculus]
          Length = 2717

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|291383314|ref|XP_002708230.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2-like isoform 1 [Oryctolagus
            cuniculus]
          Length = 1595

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1053 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1112

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1113 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1166

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1167 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|281352812|gb|EFB28396.1| hypothetical protein PANDA_006982 [Ailuropoda melanoleuca]
          Length = 2707

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 787 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 846

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 847 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 900

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 901 NSYEREMFDKASLKLGLDKAVLQDINRKG 929


>gi|194751939|ref|XP_001958281.1| GF10842 [Drosophila ananassae]
 gi|190625563|gb|EDV41087.1| GF10842 [Drosophila ananassae]
          Length = 1971

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L  ++++  +    +++       L  L+          +    G T       I 
Sbjct: 1038 KLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTVRQEAID 1097

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1098 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1151

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1152 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1181


>gi|148666356|gb|EDK98772.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1`,
           isoform CRA_b [Mus musculus]
          Length = 866

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K +AL  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 691 LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 750

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 751 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 804

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 805 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 841


>gi|119596382|gb|EAW75976.1| chromodomain helicase DNA binding protein 6, isoform CRA_c [Homo
           sapiens]
          Length = 2750

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 832 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 891

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 892 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 945

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 946 NSYEREMFDKASLKLGLDKAVLQDINRKG 974


>gi|119596384|gb|EAW75978.1| chromodomain helicase DNA binding protein 6, isoform CRA_e [Homo
           sapiens]
          Length = 2731

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 832 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 891

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 892 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 945

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 946 NSYEREMFDKASLKLGLDKAVLQDINRKG 974


>gi|119596383|gb|EAW75977.1| chromodomain helicase DNA binding protein 6, isoform CRA_d [Homo
           sapiens]
          Length = 1877

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 120 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 179

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 180 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 233

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 234 NSYEREMFDKASLKLGLDKAVLQDINRKG 262


>gi|114682043|ref|XP_001147951.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 1
           [Pan troglodytes]
          Length = 2228

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 310 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 369

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 370 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 423

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 424 NSYEREMFDKASLKLGLDKAVLQDINRKG 452


>gi|114682041|ref|XP_001148020.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 2
           [Pan troglodytes]
          Length = 2693

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 775 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 834

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 835 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 888

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 889 NSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|20521890|dbj|BAA92573.2| KIAA1335 protein [Homo sapiens]
          Length = 2041

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 123 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 182

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 183 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 236

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 237 NSYEREMFDKASLKLGLDKAVLQDINRKG 265


>gi|328863716|gb|EGG12815.1| hypothetical protein MELLADRAFT_46455 [Melampsora larici-populina
           98AG31]
          Length = 1261

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYH-------FNSDLAR--LQKAFPQGRTLDKDPCTI-Q 102
           K + L+ ++ K  A    +++ +        F    A   ++     G T  ++   + +
Sbjct: 683 KFELLDRVLPKLFATGHRVLMFFQMTQVMDIFQDYCAYRGIKNLRLDGMTKPEERADLLK 742

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N     I L      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 743 TFNHPQCDIHLFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 796

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            K+ V V  LI   +++E ++ + + K  +   ++ A + + 
Sbjct: 797 QKKEVRVLRLITSKSVEEHIMSKAQFKLDMDKKVIQAGRFDH 838


>gi|167539947|ref|XP_001741453.1| chromodomain helicase hrp1 [Entamoeba dispar SAW760]
 gi|165893990|gb|EDR22091.1| chromodomain helicase hrp1, putative [Entamoeba dispar SAW760]
          Length = 1249

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
              K+  L+ ++ K  A+   +++       L  ++K             G    +D   
Sbjct: 619 SSGKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYERLDGSIKSEDRQN 678

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +   ++   +      + G G+NL    + ++ +   W+ +   Q   R       
Sbjct: 679 AIDRFMNPEMNRFIFLLCTRAGGFGINLSE-ADTVIIYDSDWNPQNDLQAQARC-----H 732

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K+ V VY L+++NT +  + +R   K  +   +L
Sbjct: 733 RIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVL 770


>gi|148684276|gb|EDL16223.1| stretch responsive protein 278, isoform CRA_b [Mus musculus]
          Length = 1546

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 514 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 573

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 574 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 627

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 628 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 659


>gi|126334594|ref|XP_001365802.1| PREDICTED: similar to BRM protein [Monodelphis domestica]
          Length = 1570

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1046 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1105

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1106 LLKKFNEPGSQFFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1159

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1160 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1199


>gi|114682033|ref|XP_001148096.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 3
           [Pan troglodytes]
 gi|114682035|ref|XP_001148168.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 4
           [Pan troglodytes]
 gi|114682037|ref|XP_001148245.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 5
           [Pan troglodytes]
 gi|114682039|ref|XP_001148310.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 6
           [Pan troglodytes]
          Length = 2713

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|23193483|gb|AAN14536.1|AF459086_1 SNF2P [Oryza sativa Japonica Group]
 gi|23193485|gb|AAN14537.1| SNF2P [Oryza sativa Japonica Group]
          Length = 894

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 31/176 (17%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------------- 85
           E +H  +    K+  L++I++K +     +++       L  LQ                
Sbjct: 361 EGEHLVQ-ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGS 419

Query: 86  ----KAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               + F   ++    P    +++ N+    +      + G GLNL  G + ++F+   W
Sbjct: 420 VRAEERFAAIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDW 478

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +  +Q ++R       + G    V    L++Q TI+E++++R   K  +   ++
Sbjct: 479 NPQADKQALQR-----AHRIGQLNNVLSINLVSQRTIEEVIMRRAERKLKLSHSVI 529


>gi|311268331|ref|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1 [Sus
            scrofa]
          Length = 1968

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|307179332|gb|EFN67696.1| Helicase ARIP4 [Camponotus floridanus]
          Length = 3060

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 29/161 (18%)

Query: 59   LEVIIEKANAAPIIVAYHFN-----SDLARLQKAFPQGRT------------------LD 95
            LE  I+  +         F        LAR     P G+T                  L+
Sbjct: 2017 LEEAIKLGDRVLAFSQSLFTLNLIEDFLARNSVKHPDGQTDAWIKNVNYYRLDGSTSALE 2076

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            ++    +  N  KI L      +   G+NL  G N  + F   W+     Q +      R
Sbjct: 2077 REKLINEFNNNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNPCHDTQAV-----CR 2130

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2131 VYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2171


>gi|293358941|ref|XP_232354.4| PREDICTED: chromodomain helicase DNA binding protein 4 [Rattus
            norvegicus]
          Length = 1967

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|118090021|ref|XP_420485.2| PREDICTED: similar to helicase SMARCAD1 [Gallus gallus]
          Length = 969

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRT-LDK 96
           + +   K + LE ++         +++   F   L  L+              G+T +  
Sbjct: 792 QILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISD 851

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I E+N    I +      + G G+NL    N+++   +  +    +Q  +R     
Sbjct: 852 RIHLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC---- 906

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V V  LI++ TI+E +L+  + K  ++  +  A
Sbjct: 907 -HRVGQTREVKVIKLISKGTIEESMLKMNQQKLKLEQDMTAA 947


>gi|94707512|sp|Q8BYH8|CHD9_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 9;
            Short=CHD-9; AltName: Full=ATP-dependent helicase CHD9;
            AltName: Full=PPAR-alpha-interacting complex protein 320
            kDa; AltName: Full=Peroxisomal proliferator-activated
            receptor A-interacting complex 320 kDa protein
          Length = 2885

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|73997440|ref|XP_853783.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 2 [Canis familiaris]
          Length = 1937

 Score = 85.4 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1062 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1121

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1122 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1175

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1176 SVEERITQVAKKKMML 1191


>gi|301771598|ref|XP_002921219.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like,
           partial [Ailuropoda melanoleuca]
          Length = 1363

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           E         K+  L+ I+ K       +++       L  L+          +    G 
Sbjct: 411 EGGALIKASGKLMLLQKILRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 470

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 471 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 526

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 527 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 564


>gi|294899102|ref|XP_002776495.1| DNA repair protein RAD5, putative [Perkinsus marinus ATCC 50983]
 gi|239883507|gb|EER08311.1| DNA repair protein RAD5, putative [Perkinsus marinus ATCC 50983]
          Length = 666

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLNL   G  L    LWW+    +Q + R+      + G +  V +Y  
Sbjct: 546 VLLVSLRAGGVGLNLT-AGRTLYLLDLWWNPAVEEQAMMRV-----HRLGQQHTVRIYRF 599

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + +++ID+ ++     KS + ++  +A     + 
Sbjct: 600 VVRDSIDQRIMSLQAGKSRLTNMAFDASDAAALQ 633


>gi|219113657|ref|XP_002186412.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583262|gb|ACI65882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 509

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 32/188 (17%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK------- 86
           A+G                K   L+ ++ +   +   +++     S L  ++        
Sbjct: 325 ASGVHLGTAHPQLLVRASGKFALLDRMLSRLYRDGHQVLIFSQMTSVLNVMEDYLLFRNW 384

Query: 87  ---AFPQGRTLDKDPCTIQEWNEGKIP--------------LLFAHPASCGHGLNLQYGG 129
                     +D+    + ++N  K                +      + G G+NL    
Sbjct: 385 NFCRIDGSTNIDERQRQMDQFNAEKTAGENGRRSKADDRHFVFLLSTRAGGLGINLT-SA 443

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ F   W+     Q ++R       + G    V VY L+  N++D  ++++  +K  
Sbjct: 444 DTVIIFDSDWNPHADSQAMDR-----AHRLGQDLPVAVYRLLTVNSVDIEMMEKQISKKK 498

Query: 190 IQDLLLNA 197
           ++ + +  
Sbjct: 499 LERMTIAG 506


>gi|73997442|ref|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 22 [Canis familiaris]
          Length = 1933

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|29244924|ref|NP_115597.3| chromodomain-helicase-DNA-binding protein 6 [Homo sapiens]
 gi|296439466|sp|Q8TD26|CHD6_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 6;
           Short=CHD-6; AltName: Full=ATP-dependent helicase CHD6;
           AltName: Full=Radiation-induced gene B protein
 gi|56203260|emb|CAI22255.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|56203561|emb|CAI21744.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|57208321|emb|CAI42977.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|119596381|gb|EAW75975.1| chromodomain helicase DNA binding protein 6, isoform CRA_b [Homo
           sapiens]
 gi|225000154|gb|AAI72397.1| Chromodomain helicase DNA binding protein 6 [synthetic construct]
          Length = 2715

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 797 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 857 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 910

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 911 NSYEREMFDKASLKLGLDKAVLQDINRKG 939


>gi|327263457|ref|XP_003216536.1| PREDICTED: probable global transcription activator SNF2L2-like
            [Anolis carolinensis]
          Length = 1559

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1036 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFAYLRLDGTTKSEDRAA 1095

Query: 101  I-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE      +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1096 LLKKFNEPNSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1149

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1150 RIGQQNEVRVLRLCTVNSVEEKILSAAKYKLNVDQKVIQA 1189


>gi|194210904|ref|XP_001497220.2| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like isoform 1 [Equus caballus]
          Length = 1006

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 37/218 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-EKHWKEVHDEKIKA- 58
           MK    F+ E       + ++  N  S+  KC    +    +D  E    E+ D  I+A 
Sbjct: 409 MKDLDAFENET-----AKKVKLQNVLSQLRKC---VDHPYLFDGVEPEPFEIGDHLIEAS 460

Query: 59  ---------LEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
                    L  +  +++   +++       L  LQ              G    ++   
Sbjct: 461 GKLHLLDKLLAFLYSRSHR--VLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHL 518

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + 
Sbjct: 519 AIKNFGQKPIFIFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRI 572

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  ++V V  LI ++T++E+V ++  +K  + + ++  
Sbjct: 573 GQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEG 610


>gi|73997428|ref|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 16 [Canis familiaris]
          Length = 1756

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|19112177|ref|NP_595385.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe 972h-]
 gi|74625356|sp|Q9P793|MIT1_SCHPO RecName: Full=Chromatin remodeling factor mit1; AltName:
            Full=Mi2-like interacting with clr3 protein 1; AltName:
            Full=Snf2/Hdac-containing repressor complex protein mit1;
            Short=SHREC protein mit1
 gi|7573203|emb|CAB87372.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe]
          Length = 1418

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               I++   F   L  L+            F    +  +    I  +N    ++      
Sbjct: 887  GHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLS 946

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q I R       + G K+ V V+ L  +++
Sbjct: 947  TRAGGVGINL-ASADTVIILDPDFNPHQDMQAIAR-----AHRYGQKKKVLVFVLTTRDS 1000

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
            ++E ++Q  + K  +  L++ +L
Sbjct: 1001 VEEKIIQNAQKKLVLDHLIVESL 1023


>gi|24047226|gb|AAH38596.1| CHD4 protein [Homo sapiens]
 gi|167773199|gb|ABZ92034.1| chromodomain helicase DNA binding protein 4 [synthetic construct]
          Length = 1937

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1062 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1121

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1122 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1175

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1176 SVEERITQVAKKKMML 1191


>gi|301767448|ref|XP_002919141.1| PREDICTED: probable global transcription activator SNF2L2-like
            [Ailuropoda melanoleuca]
          Length = 1546

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1004 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1063

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1064 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1117

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1118 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1157


>gi|291383316|ref|XP_002708231.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2-like isoform 2 [Oryctolagus
            cuniculus]
          Length = 1577

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1053 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1112

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1113 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1166

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1167 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|219518574|gb|AAI45220.1| Chd9 protein [Mus musculus]
          Length = 2884

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1194 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1253

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1254 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1307

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1308 RNSYEREMFDRASLKLGLDKAVLQSM 1333


>gi|149053041|gb|EDM04858.1| chromodomain helicase DNA binding protein 3 [Rattus norvegicus]
          Length = 1827

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 874  EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 933

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 934  TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 989

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 990  --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1027


>gi|311268329|ref|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 [Sus
            scrofa]
          Length = 2002

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1051 EGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1166

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1167 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|308163310|gb|EFO65660.1| DNA-dependent ATPase, putative [Giardia lamblia P15]
          Length = 1276

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 44  EEKHWKEVHDE--KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           E  H   V  +   +  L   I+  N   ++V     S L  ++                
Sbjct: 488 EGDHIVNVSGKMVVLDKLITRIKAINEK-VLVFCQMTSMLNIIEDYLRYREYLYCRIDGS 546

Query: 92  RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             L+     +Q +N    P+        +   GLNL    N ++ +   ++ +   Q + 
Sbjct: 547 TDLETRAKYMQMFNTPTNPVFVFLLSTRAGCLGLNLT-AANHVIIYQQDFNPQADLQAVA 605

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R       +    + VFVY L+A+NT+D  + +R + K  + +L++ 
Sbjct: 606 R-----AYRLLQTKEVFVYRLLAENTVDTRIYERAQLKLGLDNLIIQ 647


>gi|19421557|gb|AAK56405.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
          Length = 2713

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|20152037|gb|AAM11378.1| LD39323p [Drosophila melanogaster]
          Length = 1101

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGR 92
           +  DE          K+  L+ ++ +       +++       L  L     ++ FP  R
Sbjct: 290 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR 349

Query: 93  TLDK-----DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N EG           + G G+NL    + ++ F   W+ +   
Sbjct: 350 LDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDL 408

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R       + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 409 QAQAR-----AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 456


>gi|327273061|ref|XP_003221301.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Anolis carolinensis]
          Length = 1106

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
            +   K + L  I+ +       +++   F   L  L         +     G+T   D  
Sbjct: 931  LDSGKFRTLIHILSEFKEKGNRVVLFSQFTMMLDILEVLLKHEQHRYLRLDGKTQIADRI 990

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 991  HLIDEFNSDMGIFIFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 1044

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V V  LI++ TI+E +L+  + K  ++  +  A
Sbjct: 1045 RVGQTREVKVIRLISKGTIEESMLKISQQKLKLEQDMTAA 1084


>gi|302821505|ref|XP_002992415.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
 gi|300139831|gb|EFJ06565.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
          Length = 1016

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + QR  Y  L  ++I+A N+  +  + L +A                  G  Y+  E   
Sbjct: 377 QMQRNYYKALLQKDIDAINTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTGEHLV 436

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           +      +    +   K  ++ +++       L  L+               G + +   
Sbjct: 437 ENSGKMVLLDKLLPKLKQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDRE 496

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N    +  +      + G G+NL    +I++ +   W+ +   Q        R 
Sbjct: 497 FAIEAFNREGSEKFIFLLSTRAGGLGINL-ATADIVILYDSDWNPQVDLQA-----QDRA 550

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    Q TI+E V++R   K  +  L++ 
Sbjct: 551 HRIGQKKEVQVFRFCTQYTIEEKVIERAYKKLALDALVIQ 590


>gi|195038055|ref|XP_001990476.1| GH18228 [Drosophila grimshawi]
 gi|193894672|gb|EDV93538.1| GH18228 [Drosophila grimshawi]
          Length = 1336

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   + ++ QG            ++     +++N     +  L      + G G
Sbjct: 975  YEFEGDVGNFKGSWIQGEDYFRLDGSCSVEQRESMCKQFNNASNVRARLFLISTRAGGLG 1034

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1035 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYE 1088

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1089 RQVAKQATAKRVID 1102


>gi|196006111|ref|XP_002112922.1| hypothetical protein TRIADDRAFT_25151 [Trichoplax adhaerens]
 gi|190584963|gb|EDV25032.1| hypothetical protein TRIADDRAFT_25151 [Trichoplax adhaerens]
          Length = 678

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 20/158 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC 99
               KIK L+ ++         +++   F   L  ++              G+T  KD  
Sbjct: 498 FDSGKIKCLDRLLPLMKERGDRVLLFSQFVMVLDIIECYIQYRGYSYLRMDGQTPIKDRL 557

Query: 100 T-IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N+ +    +      + G G+NL    N+++   + ++    +Q  +R      
Sbjct: 558 DLIDQFNDSEADKFIFLLSTKASGLGINLT-SANVVILHDIDFNPHNDKQAEDRC----- 611

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V VY LI  +TID+ +LQ    K  ++  +
Sbjct: 612 HRVGQDKDVIVYRLICPDTIDQTMLQFCDNKLHLEKSV 649


>gi|73997414|ref|XP_867801.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 9 [Canis familiaris]
          Length = 1899

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL-LFAH 115
                +++       L  L+          +    G T +     I  +N  +        
Sbjct: 1053 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNGREPDFCFLLS 1112

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + +
Sbjct: 1113 TRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRAS 1166

Query: 176  IDELVLQRLRTKSTI 190
            ++E + Q  + K  +
Sbjct: 1167 VEERITQVAKKKMML 1181


>gi|73955627|ref|XP_536627.2| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            isoform 3 [Canis familiaris]
          Length = 1977

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1028 EGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1087

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1088 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1143

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1144 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1181


>gi|268564215|ref|XP_002639045.1| C. briggsae CBR-TAG-192 protein [Caenorhabditis briggsae]
          Length = 2869

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPC 99
               K+  +E ++ K   +   +++       L  L++             G    D    
Sbjct: 1445 ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERIDGNVRGDMRQA 1504

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +        +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1505 AIDRFSKENSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----H 1558

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKET 202
            + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E 
Sbjct: 1559 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEG 1606


>gi|316972001|gb|EFV55707.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1787

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 22/179 (12%)

Query: 35   LANGAVYYDE--EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-- 88
            +A    Y D+            K + L+ ++ K  A+   +++       +  ++  F  
Sbjct: 1102 MAEHFGYPDKIVSGPELYRASGKFELLDRVLPKLKASGHRVLLFCQMTCLMTIMEDYFHY 1161

Query: 89   -------PQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                     G T  +D    + ++N       +      + G GLNLQ   + ++ F   
Sbjct: 1162 RDFKYLRLDGTTKSEDRGELLAKFNAPASDYFIFLLSTRAGGLGLNLQ-AADTVIIFDSD 1220

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+  +  Q        R  + G  R V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1221 WNPHQDIQA-----QDRAHRIGQLREVRVLRLMTVNSVEERILAAARYKLNVDEKVIQA 1274


>gi|308493124|ref|XP_003108752.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
 gi|308248492|gb|EFO92444.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
          Length = 1496

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVH----- 52
             Y   ++ L  D +  +  A + ++  V   +L N    +         HWK        
Sbjct: 788  IYRHMKKGLLLDAKMSS-GARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVSGKD 846

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK 96
                  K++ L+ I+ K  A    +++ +           F                 D+
Sbjct: 847  LMRVAGKLELLDRILPKLKATGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 906

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N       L      + G GLNLQ   + ++ F   W+  +  Q        
Sbjct: 907  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QD 960

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 961  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1005


>gi|27502706|gb|AAH42442.1| Smarcad1 protein [Mus musculus]
          Length = 836

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K +AL  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 661 LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 720

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 721 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 774

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 775 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 811


>gi|309355522|emb|CAP38925.2| CBR-TAG-192 protein [Caenorhabditis briggsae AF16]
          Length = 2927

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPC 99
               K+  +E ++ K   +   +++       L  L++             G    D    
Sbjct: 1461 ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERIDGNVRGDMRQA 1520

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +        +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1521 AIDRFSKENSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----H 1574

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKET 202
            + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E 
Sbjct: 1575 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEG 1622


>gi|195379440|ref|XP_002048487.1| GJ13998 [Drosophila virilis]
 gi|194155645|gb|EDW70829.1| GJ13998 [Drosophila virilis]
          Length = 2012

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPCTIQ 102
            K+  L  ++++  +    +++       L  L+        +   +D           I 
Sbjct: 1051 KLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTVRQEAID 1110

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1111 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1164

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1165 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1194


>gi|239609713|gb|EEQ86700.1| DNA excision repair protein [Ajellomyces dermatitidis ER-3]
          Length = 1026

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +N   ++V  H    L  LQ  F              + D     +  +N + +  +   
Sbjct: 628 SNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYDDRTKAVDSFNADPREFVFLI 687

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 688 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQSRDVEVFRLVSAG 741

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 742 TIEEIVYARQIYKQQQAN 759


>gi|159117623|ref|XP_001709031.1| DNA-dependent ATPase, putative [Giardia lamblia ATCC 50803]
 gi|157437146|gb|EDO81357.1| DNA-dependent ATPase, putative [Giardia lamblia ATCC 50803]
          Length = 1276

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 44  EEKHWKEVHDE--KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           E  H   V  +   +  L   I+  N   ++V     S L  ++                
Sbjct: 488 EGDHIVNVSGKMVVLDKLITRIKAINEK-VLVFCQMTSMLNIIEDYLRYREYLYCRIDGS 546

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             L+     +Q +N    P  +      +   GLNL    N ++ +   ++ +   Q + 
Sbjct: 547 TDLETRAKYMQMFNTPTNPAFVFLLSTRAGCLGLNLT-AANHVIIYQQDFNPQADLQAVA 605

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R       +    + VFVY L+A+NT+D  + +R + K  + +L++ 
Sbjct: 606 R-----AYRLLQTKEVFVYRLLAENTVDTRIYERAQLKLGLDNLIIQ 647


>gi|326931681|ref|XP_003211955.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like
           [Meleagris gallopavo]
          Length = 2658

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 791 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 850

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 851 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 904

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 905 NSYEREMFDKASLKLGLDKAVLQDINRKG 933


>gi|296200471|ref|XP_002806815.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 6-like [Callithrix jacchus]
          Length = 2692

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 775 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 834

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 835 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 888

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 889 NSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|281203782|gb|EFA77978.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2536

 Score = 85.4 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 27/181 (14%)

Query: 24  NSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           NS +   K +Q +   V  D          H   +  + +  L  I++       +    
Sbjct: 742 NSDAIYHKLIQASGKLVLIDKLLPKLKAGNHKVLIFSQMVSVL-DILDD-----YLTFRG 795

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
           +     R+  +       +     I  ++       +      + G G+NL    + ++ 
Sbjct: 796 YLH--ERIDGSIK----AEDRQAAIDRFSAPDSDRFVFLLCTRAGGMGINLT-AADTVII 848

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+ +   Q   R       + G  + V VY L+ +NT + ++  R   K  +   +
Sbjct: 849 FDSDWNPQNDLQAQARC-----HRIGQDKMVKVYRLVTRNTYERIMFDRASKKLGLDRAV 903

Query: 195 L 195
           L
Sbjct: 904 L 904


>gi|119604572|gb|EAW84166.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 4, isoform CRA_e [Homo
           sapiens]
          Length = 1275

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 739 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 798

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 799 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 852

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 853 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 892


>gi|119604569|gb|EAW84163.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 4, isoform CRA_b [Homo
           sapiens]
          Length = 1274

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 739 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 798

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 799 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 852

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 853 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 892


>gi|255580599|ref|XP_002531123.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223529287|gb|EEF31257.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 1718

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 43/236 (18%)

Query: 2    KQYHK--FQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            KQY+K   +R   +L   ++G  +   N   +  KC    N    ++   H         
Sbjct: 833  KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKC---CNHPFLFESADHGYGGDSGFN 889

Query: 48   ------WKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAF---------PQ 90
                     +   K+  L+ ++ + +     +++       L  L +             
Sbjct: 890  DSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRLLDILAEYLSLRGFQFQRLD 949

Query: 91   GRTLDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G T  +     +  +N              + G G+NL    + ++ F   W+ +   Q 
Sbjct: 950  GSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQA 1008

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + R       + G +  V +Y  +   +++E +L+R + K  +  L++  L  E  
Sbjct: 1009 MSR-----AHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGR 1059


>gi|326512362|dbj|BAJ99536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
           ++ D  + AL   I++ +   +++   +   L  L                   L+    
Sbjct: 591 QLLDRLLDAL---IKRNH--KVLIFSQWTKILDILDYYLSEKGLKVCRIDGSVKLEDRRN 645

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N     + +      + G G+NL    +  + +   W+ +   Q ++R       
Sbjct: 646 QIAAFNDLNSGMNVFILSTRAGGLGINLT-SADTCILYDSDWNPQMDLQAMDRC-----H 699

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G  + V VY L   N+++  ++++   K  ++ +++
Sbjct: 700 RIGQTQPVHVYRLATSNSVEGRIIKKAFGKLKLEHVVI 737


>gi|302911947|ref|XP_003050605.1| hypothetical protein NECHADRAFT_123411 [Nectria haematococca mpVI
            77-13-4]
 gi|256731542|gb|EEU44892.1| hypothetical protein NECHADRAFT_123411 [Nectria haematococca mpVI
            77-13-4]
          Length = 1066

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 30/200 (15%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL----EVIIEKANA 68
             DL+   IE   +  K        N  +   + ++W      KI+ L      +     +
Sbjct: 862  IDLEQPEIEQDEALVKK-------NSIINRIKMENW--TSSSKIELLVHELHKLRSDNAS 912

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPA 117
               I+   F + L     RL++A      LD      Q         N   +        
Sbjct: 913  HKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFMNNVDVECFLVSLK 972

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G  LNL     + +    WW+     Q  +R       + G  R   +  L  +++++
Sbjct: 973  AGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTITRLCIEDSVE 1026

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
              ++     K+++    +NA
Sbjct: 1027 SRMVLIQEKKTSMIHSTVNA 1046


>gi|73997404|ref|XP_867762.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 4 [Canis familiaris]
          Length = 1949

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|73997406|ref|XP_867770.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 5 [Canis familiaris]
          Length = 1910

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1043 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1102

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1103 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1156

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1157 SVEERITQVAKKKMML 1172


>gi|73997432|ref|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 18 [Canis familiaris]
          Length = 1760

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|73997424|ref|XP_867839.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 14 [Canis familiaris]
          Length = 1779

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 932  GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 991

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 992  STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1045

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1046 SVEERITQVAKKKMML 1061


>gi|73946657|ref|XP_860572.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 26 [Canis familiaris]
          Length = 1498

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 974  ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1033

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1034 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1087

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1088 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1127


>gi|242051170|ref|XP_002463329.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
 gi|241926706|gb|EER99850.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
          Length = 1685

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69   APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
              +++       L  L +             G T  D     ++ +N             
Sbjct: 883  HRVLIFSQMVKMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLST 942

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   ++
Sbjct: 943  RAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQQETVNIYRFVTCKSV 996

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            +E +L+R + K  +  L++  L  E  
Sbjct: 997  EEDILERAKKKMVLDHLVIQKLNAEGR 1023


>gi|149408770|ref|XP_001508504.1| PREDICTED: similar to helicase-like transcription factor
           [Ornithorhynchus anatinus]
          Length = 884

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
           +   KI AL      + +K      ++   F + L+ ++K   +   +           K
Sbjct: 705 ISSSKINALMHSLIDLRKKNPQTKSLIVSQFTTFLSLIEKPLKESGFVFTRLDGSMPQKK 764

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              +IQ +     G   ++     + G GLNL    + +      W+     Q  +R   
Sbjct: 765 RVESIQCFQSTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-- 821

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               + G K+ V +   I +++++E +L+    K  + 
Sbjct: 822 ---HRLGQKQEVVITKFIVKDSVEENMLKIQNKKRELA 856


>gi|73997418|ref|XP_867816.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 11 [Canis familiaris]
          Length = 1899

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1052 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1111

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1112 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1165

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1166 SVEERITQVAKKKMML 1181


>gi|270001259|gb|EEZ97706.1| brahma [Tribolium castaneum]
          Length = 1649

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K       +++       +  ++              G T  +D   
Sbjct: 1158 ASGKFELLDRILPKLKVTGHRVLLFCQMTQLMTIMEDYLSWRGFGYLRLDGTTKAEDRGD 1217

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N       L      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1218 LLKKFNAKNSDYFLFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1271

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1272 RIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1311


>gi|294876194|ref|XP_002767598.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239869258|gb|EER00316.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 511

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G GLNL   G  L    LWW+    +Q + R+      + G +  V +Y  
Sbjct: 391 VLLVSLRAGGVGLNLT-AGRTLYLLDLWWNPAVEEQAMMRV-----HRLGQQHTVRIYRF 444

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + +++ID+ ++     KS + ++  +A     + 
Sbjct: 445 VVRDSIDQRIMSLQAGKSRLTNMAFDASDAAALQ 478


>gi|195158016|ref|XP_002019890.1| GL11967 [Drosophila persimilis]
 gi|194116481|gb|EDW38524.1| GL11967 [Drosophila persimilis]
          Length = 220

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS IQ
Sbjct: 3   VIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQ 57

Query: 192 DLLLNA--LKKETIH 204
            ++++    K +T+ 
Sbjct: 58  RMVISGGNFKPDTLK 72


>gi|62751341|ref|NP_001015697.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Xenopus
           (Silurana) tropicalis]
 gi|58618908|gb|AAH89242.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Xenopus
           (Silurana) tropicalis]
          Length = 1003

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K   LE ++         +++   F   L  +         +     G+T + +  
Sbjct: 828 LDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERI 887

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    NI++   +  +    +Q  +R       
Sbjct: 888 HLIDEFNTDMDIFIFLLSTKAGGLGINLT-SANIVILHDIDCNPYNDKQAEDRC-----H 941

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI + TI+E +L+  + K  ++  +
Sbjct: 942 RVGQTKEVKVIKLIGKGTIEESMLKISQQKLRLEQDM 978


>gi|321468122|gb|EFX79109.1| hypothetical protein DAPPUDRAFT_319863 [Daphnia pulex]
          Length = 4355

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIP--LL 112
            KA+   +++       L  L+              GR   +     I  + +      + 
Sbjct: 2035 KADGHRVLIFSQMVRCLDILEDYLIYRKYPYERLDGRIRGNMRQAAIDRYCKPDSDRFVF 2094

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G K+ V +Y L+ 
Sbjct: 2095 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQKKMVKIYRLLT 2148

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2149 RNTYEREMFDKASLKLGLDKAVLQSM 2174


>gi|119603203|gb|EAW82797.1| chromodomain helicase DNA binding protein 9, isoform CRA_e [Homo
            sapiens]
          Length = 2823

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1137 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1196

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1197 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1250

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1251 RNSYEREMFDRASLKLGLDKAVLQSM 1276


>gi|194224690|ref|XP_001916162.1| PREDICTED: similar to RAD26L hypothetical protein [Equus caballus]
          Length = 1481

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  +D    
Sbjct: 450 SGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGNTKSEDRIKI 509

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 510 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 563

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 564 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 595


>gi|145497571|ref|XP_001434774.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401902|emb|CAK67377.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +  ++Q    +    ++   +I+++ E +I ++     +  +G+NL    N ++    WW
Sbjct: 824 EFRKIQGKMDK----NQRKASIKDFFEKQITVMLISLKAGAYGINLSC-ANHVLLVDPWW 878

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q +ER+      + G ++ V +   I  NTI+E VLQ  + K  +    L 
Sbjct: 879 NPAVEDQAVERV-----HRLGQQKQVQIVSFICDNTIEERVLQMHKMKRQLFKDALQ 930


>gi|114643075|ref|XP_001162434.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 1921

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1046 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1105

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1106 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1159

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1160 SVEERITQVAKKKMML 1175


>gi|195035285|ref|XP_001989108.1| GH10228 [Drosophila grimshawi]
 gi|193905108|gb|EDW03975.1| GH10228 [Drosophila grimshawi]
          Length = 5820

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
            KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 2643 KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 2702

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 2703 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 2756

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2757 RNTYEREMFDKASMKLGLDKAVLQSM 2782


>gi|114675380|ref|XP_512384.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 [Pan troglodytes]
          Length = 1657

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1087 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1146

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1147 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1200

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1201 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1240


>gi|49022903|dbj|BAC41410.3| mKIAA0308 protein [Mus musculus]
          Length = 1890

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 215 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 274

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 275 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 328

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 329 RNSYEREMFDRASLKLGLDKAVLQSM 354


>gi|62319947|dbj|BAD94038.1| pseudogene [Arabidopsis thaliana]
          Length = 1221

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 20/181 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF------ 88
             G +  + +     +   K+  L+ ++ +       +++       L  L +        
Sbjct: 922  GGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQ 981

Query: 89   ---PQGRTLDK-DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G T  +     +  +N              + G G+NL    + +V F   W+ +
Sbjct: 982  FQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQ 1040

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               Q + R       + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1041 NDLQAMSR-----AHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1095

Query: 203  I 203
             
Sbjct: 1096 R 1096


>gi|332020038|gb|EGI60489.1| Helicase ARIP4 [Acromyrmex echinatior]
          Length = 3091

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 29/161 (18%)

Query: 59   LEVIIEKANAAPIIVAYHFN-----SDLARLQKAFPQGRT------------------LD 95
            LE  I+  +         F        LAR    +P G+T                  L+
Sbjct: 2029 LEEAIKLGDRVLAFSQSLFTLNLIEDFLARNSLKYPDGQTDAWIKNVNYYRLDGSTSALE 2088

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            ++    +  N  KI L      +   G+NL  G N  + F   W+     Q +      R
Sbjct: 2089 REKLINEFNNNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNPCHDTQAV-----CR 2142

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2143 VYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2183


>gi|324500342|gb|ADY40163.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 1811

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LL 112
            +A+   +++       L  +++                  D     I  +++      + 
Sbjct: 1416 RADGHKVLIFSQMVRVLDIIEEFLVVQNYTFERIDGNVRGDLRQTAIDRFSKKDSDRFVF 1475

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY LI 
Sbjct: 1476 LLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTKMVKVYRLIT 1529

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
             NT +  +  +   K  +   +L +
Sbjct: 1530 CNTYEREMFDKASLKLGLDKAVLQS 1554


>gi|331230613|ref|XP_003327971.1| SNF2 family ATP-dependent chromatin-remodeling factor snf22 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306961|gb|EFP83552.1| SNF2 family ATP-dependent chromatin-remodeling factor snf22 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1537

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYH-------FNSDLAR--LQKAFPQGRTL-DKDPCTIQ 102
            K + L+ ++ K       +++ +        F    A   ++     G T  ++    ++
Sbjct: 872  KFELLDRVLPKLFRTGHRVLMFFQMTQVMDIFQDYCAYRGIKNLRLDGMTKPEERAELLK 931

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N  +  I L      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 932  TFNHPECGINLFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDLQA-----QDRAHRIG 985

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             K+ V V  LI   +++E ++ + + K  +   ++ A + + 
Sbjct: 986  QKKEVRVLRLITSKSVEEHIMSKAQFKLDMDKKVIQAGRFDH 1027


>gi|293340184|ref|XP_001079343.2| PREDICTED: chromodomain helicase DNA binding protein 3 [Rattus
            norvegicus]
          Length = 2046

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1128 EGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1187

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1188 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1243

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1244 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1281


>gi|193203140|ref|NP_491426.2| Temporarily Assigned Gene name family member (tag-192)
            [Caenorhabditis elegans]
          Length = 2967

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPC 99
               K+  +E ++ K   +   +++       L  L++             G    D    
Sbjct: 1519 ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQA 1578

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +        +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1579 AIDRFSKENSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----H 1632

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKET 202
            + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E 
Sbjct: 1633 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEG 1680


>gi|163644482|gb|AAC17559.2| Temporarily assigned gene name protein 192 [Caenorhabditis elegans]
          Length = 2963

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPC 99
               K+  +E ++ K   +   +++       L  L++             G    D    
Sbjct: 1515 ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQA 1574

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +        +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1575 AIDRFSKENSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----H 1628

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKET 202
            + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E 
Sbjct: 1629 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEG 1676


>gi|50304963|ref|XP_452439.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641572|emb|CAH01290.1| KLLA0C05368p [Kluyveromyces lactis]
          Length = 1605

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 24/172 (13%)

Query: 41   YYDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            Y  + K  KE   +K++    II    +      +++   F      L     +   L+ 
Sbjct: 1417 YTIDYKSLKE--SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNF 1474

Query: 96   -----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                       +  C    + +    ++     +   GL L    N ++    +W+    
Sbjct: 1475 LRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTC-ANHVILADPFWNPFVE 1533

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Q ++R       +   +R V+V+ L+ + ++++ +++    K T+ +L ++
Sbjct: 1534 EQAMDRC-----HRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD 1580


>gi|47086607|ref|NP_997881.1| probable global transcription activator SNF2L2 isoform 1 [Danio
            rerio]
 gi|38173711|gb|AAH60676.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Danio rerio]
          Length = 1568

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+ K  A    +++     S +  L+  F           G T  +D   
Sbjct: 1050 ASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAM 1109

Query: 101  I-QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1110 LLKKFNEEGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1163

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1164 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1203


>gi|113673906|ref|NP_001038240.1| probable global transcription activator SNF2L2 isoform 2 [Danio
            rerio]
 gi|94732532|emb|CAK04077.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Danio rerio]
          Length = 1568

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+ K  A    +++     S +  L+  F           G T  +D   
Sbjct: 1050 ASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAM 1109

Query: 101  I-QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1110 LLKKFNEEGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 1163

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1164 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1203


>gi|45384078|ref|NP_990470.1| probable global transcription activator SNF2L2 [Gallus gallus]
 gi|996020|emb|CAA62832.1| BRM protein [Gallus gallus]
          Length = 1568

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1044 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1103

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1104 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 1157

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1197


>gi|328868264|gb|EGG16642.1| chromo domain-containing protein [Dictyostelium fasciculatum]
          Length = 2319

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPC 99
               K+  ++ ++++       +++             +        +      +      
Sbjct: 901  SSSKLVLVDKLLQRLKKEGHRVLIFSQMVESLNILEDYLHYREYSYERLDGSVSSVLRQA 960

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +I+ +   E    +      S G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 961  SIERFMDQESDRFVFLLSTRSGGVGINLT-SADTVILFDSDWNPQSDLQAQARC-----H 1014

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G    V VY LI +NT ++ + +    K  +  ++LN  K  ++ 
Sbjct: 1015 RIGQTSNVKVYRLITRNTYEQYLFEVATKKLLLDHIVLNNAKNNSMK 1061


>gi|224077261|ref|XP_002195547.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Taeniopygia
           guttata]
          Length = 2673

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 767 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 826

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 827 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 880

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 881 NSYEREMFDKASLKLGLDKAVLQDINRKG 909


>gi|293347058|ref|XP_001063352.2| PREDICTED: chromodomain helicase DNA binding protein 4 [Rattus
            norvegicus]
          Length = 1928

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|73997430|ref|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 17 [Canis familiaris]
          Length = 1910

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1063 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1122

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1123 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1176

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1177 SVEERITQVAKKKMML 1192


>gi|60360510|dbj|BAD90499.1| mKIAA4075 protein [Mus musculus]
          Length = 1945

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1086 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1145

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1146 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1199

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1200 SVEERITQVAKKKMML 1215


>gi|73997416|ref|XP_867808.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 10 [Canis familiaris]
          Length = 1842

 Score = 85.0 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1003 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1062

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1063 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1116

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1117 SVEERITQVAKKKMML 1132


>gi|194389146|dbj|BAG61590.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 314 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 373

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 374 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 427

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 428 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 467


>gi|73997436|ref|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 20 [Canis familiaris]
          Length = 1850

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1003 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1062

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1063 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1116

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1117 SVEERITQVAKKKMML 1132


>gi|73997408|ref|XP_867779.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 6 [Canis familiaris]
          Length = 1870

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1003 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1062

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1063 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1116

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1117 SVEERITQVAKKKMML 1132


>gi|73991998|ref|XP_534421.2| PREDICTED: similar to chromodomain helicase DNA binding protein 6
           isoform 1 [Canis familiaris]
          Length = 2713

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|39204553|ref|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mus musculus]
 gi|51701319|sp|Q6PDQ2|CHD4_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
            Short=CHD-4
 gi|35193271|gb|AAH58578.1| Chromodomain helicase DNA binding protein 4 [Mus musculus]
          Length = 1915

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|73986636|ref|XP_853739.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 2
            [Canis familiaris]
          Length = 1673

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|66801013|ref|XP_629432.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462823|gb|EAL61023.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1221

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEG--KIPLLFAH 115
            + +++    +  L  L+     + +   R            +I+ +N+    +      
Sbjct: 597 GSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLT 656

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+ L    +I++ F   W+ +   Q        R  + G  + V VY  + +N+
Sbjct: 657 TRAGGLGITL-NTADIVILFDSDWNPQMDLQA-----QDRAHRIGQTKPVTVYRFVTENS 710

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E ++++   K  +  L++ 
Sbjct: 711 MEEKMVEKAEMKLQLDALVIQ 731


>gi|326681197|ref|XP_003201743.1| PREDICTED: transcription activator BRG1-like, partial [Danio rerio]
          Length = 771

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   Q +      G   +   S S+    L  + G V    +         K + L+ I
Sbjct: 315 LYRHMQAKGVLLTDGSEKDKKESFSEH---LGFSGGIV----QGLDLYRASGKFEVLDRI 367

Query: 63  IE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWNEG--K 108
           +   +A    +++     S +  ++  F           G T  +D   + + +N+   +
Sbjct: 368 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPASQ 427

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNLQ   + ++ F   W+  +  Q        R  + G    V V 
Sbjct: 428 YFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAHRIGQLNEVRVL 481

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L   N+++E +L   + K  +   ++ A
Sbjct: 482 RLCTVNSVEEKILAAAKYKLNVDQKVIQA 510


>gi|312077956|ref|XP_003141528.1| CHromoDomain protein family member [Loa loa]
 gi|307763307|gb|EFO22541.1| CHromoDomain protein family member [Loa loa]
          Length = 1696

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 67  NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEGKIP--LLFA 114
               +++       L  +         +     G    +     I  +N       +   
Sbjct: 816 QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQARQDAIDRFNAANAQQFVFLL 875

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G ++ V +Y  + +N
Sbjct: 876 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQQKKVLIYRFVTRN 929

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +++E +    + K  +  L++ A
Sbjct: 930 SVEERITSVAKKKMLLTHLVVRA 952


>gi|294463936|gb|ADE77489.1| unknown [Picea sitchensis]
          Length = 377

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
           K + L+ +++  +A    +++   +   L  L     +             L      I+
Sbjct: 126 KFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIK 185

Query: 103 EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N+    + +      + G G+NL    +  + +   W+ +   Q ++R       + G
Sbjct: 186 DFNDPNSNLHIFLLSTRAGGLGINLT-AADTCIIYDSDWNPQMDLQAMDRC-----HRIG 239

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + V VY L   ++ +  +L+    K  ++ +++ 
Sbjct: 240 QTKPVHVYRLCTSHSAECRMLKVAFDKLKLERVVIE 275


>gi|302667167|ref|XP_003025174.1| hypothetical protein TRV_00656 [Trichophyton verrucosum HKI 0517]
 gi|291189264|gb|EFE44563.1| hypothetical protein TRV_00656 [Trichophyton verrucosum HKI 0517]
          Length = 1020

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 621 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFLI 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 681 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 734

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 735 TIEEIVYARQIYKQQQAN 752


>gi|241999570|ref|XP_002434428.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497758|gb|EEC07252.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 3286

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               K+  L+ ++ +       ++V       L  L+      R L         +     
Sbjct: 1232 ASGKLVLLDKLLPRLKDGGHRVLVFSQMVRCLDLLEDYLVHKRYL----EYSDRF----- 1282

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+NL    + +V F   W+ +   Q   R       + G  +AV VY 
Sbjct: 1283 -VFLLCTRAGGLGINLT-AADTVVIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYR 1335

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            LI +NT +  +  +   K  +   +L +L  +  +V
Sbjct: 1336 LICRNTYEREMFDKASLKLGLDRAVLQSLNAQKENV 1371


>gi|194208593|ref|XP_001915417.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 9
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin-remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-interacting complex 3 [Equus caballus]
          Length = 2818

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1197 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1257 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1310

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1311 RNSYEREMFDRASLKLGLDKAVLQSM 1336


>gi|126322837|ref|XP_001362872.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily a, member 4,
            isoform 1 [Monodelphis domestica]
          Length = 1644

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1077 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1136

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1137 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1190

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1191 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1230


>gi|87130801|gb|ABD24032.1| PRIC320 isoform 1 [Homo sapiens]
          Length = 2881

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|49476336|gb|AAT66509.1| KISH2 [Homo sapiens]
          Length = 2881

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|327271626|ref|XP_003220588.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Anolis
           carolinensis]
          Length = 2660

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 775 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 834

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 835 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 888

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 889 NSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|259147128|emb|CAY80381.1| Sth1p [Saccharomyces cerevisiae EC1118]
          Length = 1359

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 65  KANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC-TIQEWNEGKIPLL-- 112
           KA+   +++ +          D  R   L+     G T  ++    +  +N         
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNVFNAPDSDYFCF 863

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI 
Sbjct: 864 LLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLIT 917

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++++E++L+R   K  I   ++ A K
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGK 944


>gi|195031145|ref|XP_001988297.1| GH10643 [Drosophila grimshawi]
 gi|193904297|gb|EDW03164.1| GH10643 [Drosophila grimshawi]
          Length = 1931

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLA----RLQKAFPQGRTLDK------DPCTIQEWN-EGKIPL-LFAH 115
               +++       L      LQK     + LD           +  +N EG         
Sbjct: 878  GHRVLIFSQMVRMLDVLADYLQKRHFSFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLS 937

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++ F   W+ +   Q   R       + G K  V +Y L+   +
Sbjct: 938  TRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKNQVNIYRLVTARS 991

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
            ++E +++R + K  +  L++  +
Sbjct: 992  VEEQIVERAKQKMVLDHLVIQRM 1014


>gi|291401419|ref|XP_002717032.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 [Oryctolagus cuniculus]
          Length = 1027

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 852  LDSGKFRVLGHILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 911

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 912  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 965

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 966  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|95147342|ref|NP_079410.4| chromodomain-helicase-DNA-binding protein 9 [Homo sapiens]
          Length = 2881

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|327276403|ref|XP_003222959.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like isoform 2
            [Anolis carolinensis]
          Length = 2876

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            K+    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1191 KSGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1250

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1251 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1304

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1305 RNSYEREMFDRASLKLGLDKAVLQSM 1330


>gi|294955610|ref|XP_002788591.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239904132|gb|EER20387.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 236

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 28/167 (16%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------------QGRTLDKDPCT 100
           +  ++ ++ +      ++ + F S L   ++                  Q R+L  DP  
Sbjct: 67  LDTVQSMLNEDATNKFLIFFQFTSLLEITKEEIERRGLGSCGVSNASCGQQRSLLWDPFL 126

Query: 101 IQE--WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +QE  +N     +L     + G G+NLQ   N       WW+     Q ++R       +
Sbjct: 127 VQEASFN-----ILLISLRAAGEGINLQ-AANKAFVIDPWWNPAAELQAVQR-----AHR 175

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            G  R V V   +  NTI+E +    R K    D  +   +  + H+
Sbjct: 176 LGQTRRVDVVKFVVTNTIEERIRTLQRKKQLAADTTVGGDENASYHL 222


>gi|195020242|ref|XP_001985154.1| GH16907 [Drosophila grimshawi]
 gi|193898636|gb|EDV97502.1| GH16907 [Drosophila grimshawi]
          Length = 2013

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPCTIQ 102
            K+  L  ++++  +    +++       L  L+        +   +D           I 
Sbjct: 1052 KLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTLRQEAID 1111

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1112 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1165

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1166 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1195


>gi|114662479|ref|XP_001165654.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 2 [Pan
            troglodytes]
          Length = 2883

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|114662481|ref|XP_510966.2| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 5 [Pan
            troglodytes]
 gi|114662483|ref|XP_001165616.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 1 [Pan
            troglodytes]
          Length = 2882

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|861466|gb|AAB33905.1| DNA helicase homolog [Invertebrate iridescent virus 6]
          Length = 606

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            E  +   IIV   F S L  L +A  +           G T ++     Q  N+     
Sbjct: 443 FEIMHPTKIIVFSMFTSCLDLLSEAIKEDYPNFKFVQVDGDTKNRSELFDQFKNDINTQG 502

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           LF        GLNL    + +     WW    H Q   R+      + G  + V+V+ +I
Sbjct: 503 LFLTYKVGSEGLNLTEATHCIC-IEPWWTNAVHNQAKARLW-----RTGQTKQVYVHNVI 556

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + +I+E +++  + K  +    L   ++
Sbjct: 557 IEGSIEEKIVEICKGKDDMAASYLEGKER 585


>gi|68164076|gb|AAY87153.1| ciprofibrate bound protein p240 isoform PRIC320-2 [Homo sapiens]
          Length = 1995

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 309 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 368

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 369 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 422

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 423 RNSYEREMFDRASLKLGLDKAVLQSM 448


>gi|302502981|ref|XP_003013451.1| hypothetical protein ARB_00269 [Arthroderma benhamiae CBS 112371]
 gi|291177015|gb|EFE32811.1| hypothetical protein ARB_00269 [Arthroderma benhamiae CBS 112371]
          Length = 1019

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 621 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFLI 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 681 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 734

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 735 TIEEIVYARQIYKQQQAN 752


>gi|289614685|emb|CBI58522.1| unnamed protein product [Sordaria macrospora]
          Length = 1159

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 21/159 (13%)

Query: 51   VHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
                KI AL      + ++      +V   F S L  +  A            G    K 
Sbjct: 984  DSSAKIVALISHLRALRQEHPKMKSLVISQFTSFLTLISSALARHKIAFLRLDGSMSQKA 1043

Query: 98   PCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +     K  +L     + G GLNL      +     WW      Q I+R+    
Sbjct: 1044 RAAVLTEFQASNKFCVLLLSLKAGGVGLNLTN-AKRVYMMDPWWSFAVEAQAIDRV---- 1098

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G +  V VY  I + +++  +L+    K  I   L
Sbjct: 1099 -HRMGQEDEVRVYRFIVKQSVEMRMLRVQERKKFIATSL 1136


>gi|123421883|ref|XP_001306074.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121887628|gb|EAX93144.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1483

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQEWNE--GKIPLLFA 114
           N   +++       L  +Q              G    +     I ++NE   +  +   
Sbjct: 550 NGHRVLLFSQMTKMLDIIQDYLVYKGYKFERLDGSVKSEIRQGMIDKFNEEGSEDFIFLL 609

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ +   Q   R       + G K+ V VY L+   
Sbjct: 610 CTKAGGLGINLT-SADTVIIYDSDWNPQNDLQATAR-----AHRIGQKKNVKVYRLLTAK 663

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKET 202
           + +  +      K  +   +L   K + 
Sbjct: 664 SYERKMFDTAAIKLGLDQAVLENTKDKP 691


>gi|149020472|gb|EDL78277.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Rattus
            norvegicus]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73997410|ref|XP_867787.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 7 [Canis familiaris]
          Length = 1766

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 938  GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 997

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 998  STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1051

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1052 SVEERITQVAKKKMML 1067


>gi|297684878|ref|XP_002820041.1| PREDICTED: hypothetical protein LOC100434553 [Pongo abelii]
          Length = 1549

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 507 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 566

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 567 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 620

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 621 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLH 652


>gi|189233881|ref|XP_970343.2| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein
           [Tribolium castaneum]
 gi|270014822|gb|EFA11270.1| hypothetical protein TcasGA2_TC010805 [Tribolium castaneum]
          Length = 1697

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVH----- 52
           K Y+  ++     ++G      N   +  KC    N A+       E  + +E H     
Sbjct: 678 KNYNALRKG----VKGSTNTFLNIVIELKKC---CNHALLTKPTEYESNNSQEDHLQLLL 730

Query: 53  --DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DP 98
               K+  L+ ++ +       +++       L  L      + FP  R           
Sbjct: 731 RGSGKLVLLDKLLIRLRETGHRVLIFSQMVRMLDILGEYLQLRHFPFQRLDGGIKGELRK 790

Query: 99  CTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N EG           + G G+NL    + ++ F   W+ +   Q   R      
Sbjct: 791 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----A 844

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 845 HRIGQKNQVNIYRLVTARSVEEEIVERAKQKMVLDHLVIQRM 886


>gi|116179964|ref|XP_001219831.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
 gi|88184907|gb|EAQ92375.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
          Length = 1793

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 37/224 (16%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQL----ANGAVYY---DEEKHWKEVH------ 52
            +  R ++       ++A    S +   +QL     +  +Y    ++     E+       
Sbjct: 1098 ELIRSVFVQ---GKMKAHERGSLSNILMQLRKCLCHPFIYSQAIEDRTTSAELTRRNLVE 1154

Query: 53   -DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
               K+  LE+++ K       +++   F   L  L+          +             
Sbjct: 1155 ASSKLMLLEIMLPKLKERGHRVLLFSQFLDQLTVLEDFLAGLGLRHERLDGSQSSMEKQS 1214

Query: 100  TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N     I ++     + G G+NL    + ++     W+  +  Q + R       
Sbjct: 1215 KIDAFNAPDSDIFVMLLSTRAGGVGINL-ATADTVIILDPDWNPHQDIQALSR-----AH 1268

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V  + L+  ++ +E +LQ  R K  +  LL+  +  E
Sbjct: 1269 RIGQRKKVLCFQLMTVDSAEEKILQIGRKKLALDHLLIETMDNE 1312


>gi|320039914|gb|EFW21848.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1048

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
              KI+ L  I+++       IV   F S L +++            +  G        +
Sbjct: 797 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLESAGIGYARYDGGMRNGLREAS 856

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++        +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 857 LEKLRHSSSTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 910

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 911 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 948


>gi|303311897|ref|XP_003065960.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105622|gb|EER23815.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1048

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
              KI+ L  I+++       IV   F S L +++            +  G        +
Sbjct: 797 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLESAGIGYARYDGGMRNGLREAS 856

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++        +L     +   GLNL    + +V    +W+    +Q I+R+      + 
Sbjct: 857 LEKLRHSSSTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPFVEEQAIDRV-----HRL 910

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 911 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 948


>gi|162455821|ref|YP_001618188.1| SNF2 family helicase [Sorangium cellulosum 'So ce 56']
 gi|161166403|emb|CAN97708.1| helicase, Snf2 family [Sorangium cellulosum 'So ce 56']
          Length = 944

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 24/186 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQ 85
            +K  Q  N     D  +  ++    K+  LE +I +  A P   +IV   +   L    
Sbjct: 503 LMKARQACNALELCDPRR--RKKASPKLDELEALIAEVTAQPRNKVIVFSEWVGMLELAS 560

Query: 86  KAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +   + R            D+ P  +  + +     +     + G GLNLQ   + +V  
Sbjct: 561 ERLDRLRVGHAMLHGDVPTDRRPALLDRFRDDPAVRVLLSTDAGGVGLNLQ-AASYVVHL 619

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+     Q   R       + G  R+V V YL A+  I+  +   L  K  +   L+
Sbjct: 620 DLPWNPARLDQRTAR-----AHRLGQGRSVSVTYLCAEEGIERGIEGILSEKRKV---LV 671

Query: 196 NALKKE 201
            +L+ +
Sbjct: 672 ASLRAD 677


>gi|295670543|ref|XP_002795819.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb01]
 gi|226284904|gb|EEH40470.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb01]
          Length = 1187

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 45/182 (24%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT----------------- 93
               KI+AL   + K  +   ++V   F S L  +                          
Sbjct: 986  TSAKIQALISHLTKLPSNDKVVVFSQFTSFLDLIGHQLTCAGISHLRFDGSISQTSRAAV 1045

Query: 94   ------------------LDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNIL 132
                                +        N  K     +L     + G GLNL    N +
Sbjct: 1046 LAKFCSVAVADDKDDDDEDKRQSKLPSSNNHAKESPPNVLLISLRAGGVGLNLTT-ANHV 1104

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 WW      Q I+R+      + G  R V V   I +++I+  +L+    K  I  
Sbjct: 1105 FMMDPWWSFATEAQAIDRV-----HRMGQLRDVTVTRFIVKDSIEGRILKIQERKMMIAG 1159

Query: 193  LL 194
             L
Sbjct: 1160 SL 1161


>gi|194208967|ref|XP_001497269.2| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 2 [Equus caballus]
          Length = 1029

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 854  LDSGKFRVLGRILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 913

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 914  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 967

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 968  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1004


>gi|156393888|ref|XP_001636559.1| predicted protein [Nematostella vectensis]
 gi|156223663|gb|EDO44496.1| predicted protein [Nematostella vectensis]
          Length = 814

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 32/170 (18%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDP------------ 98
             K+  L  I+  A      ++V       L  +++A   G                   
Sbjct: 550 SGKLVLLLEILADAEAVEEKVLVFSQSLVSLDLIERALGGGEVGGDRENWCKGCDYFRMD 609

Query: 99  -----CTIQEW----NEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   Q W    N+       L      + G G+NL    N ++ F   W+     Q
Sbjct: 610 GSTSVQLRQRWADIFNDPDNKTARLFLISTKAGGLGINL-VAANRVIVFDASWNPSHDVQ 668

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R+      + G  +AV+VY  ++Q T++E V  R   K +I + +++
Sbjct: 669 SIFRV-----YRFGQTKAVYVYRFLSQGTMEERVYDRQVAKLSISERVVD 713


>gi|154488700|ref|ZP_02029549.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
 gi|154082837|gb|EDN81882.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
          Length = 721

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTI 101
              K K L  IIE+A      ++V   +   + ++                T  +    I
Sbjct: 516 DSGKAKRLLEIIEEAKSEGRKVLVFSFYLDTIRKIADMLGSQCTEPINGSITPTRRQEII 575

Query: 102 QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++     +L A   + G GLN+Q   ++++            Q I R       + G
Sbjct: 576 DDFDKAPAGQVLVAQIVAGGTGLNIQ-SASVVIICEPQLKPSIENQAISR-----AYRMG 629

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R V VY L+A+NTIDE +   L  K  + + 
Sbjct: 630 QARNVLVYRLLAENTIDEKITDILARKQEVFNA 662


>gi|148684275|gb|EDL16222.1| stretch responsive protein 278, isoform CRA_a [Mus musculus]
          Length = 708

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 514 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 573

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 574 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 627

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 628 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 659


>gi|332029993|gb|EGI69818.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Acromyrmex echinatior]
          Length = 1852

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            + +   +++       L  L+          +     Q++      +      + G G+N
Sbjct: 956  RDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGAQQF------VFLLSTRAGGLGIN 1009

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++ +   W+     Q       +R  + G    V +Y  + +N+++E V Q  
Sbjct: 1010 L-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVTRNSVEERVTQVA 1063

Query: 185  RTKSTI 190
            + K  +
Sbjct: 1064 KRKMML 1069


>gi|327288760|ref|XP_003229093.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Anolis
            carolinensis]
          Length = 2059

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1109 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1168

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1169 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1224

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1225 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1262


>gi|215273951|sp|Q3L8U1|CHD9_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 9;
            Short=CHD-9; AltName: Full=ATP-dependent helicase CHD9;
            AltName: Full=Chromatin-related mesenchymal modulator;
            Short=CReMM; AltName: Full=Chromatin-remodeling factor
            CHROM1; AltName: Full=Kismet homolog 2; AltName:
            Full=PPAR-alpha-interacting complex protein 320 kDa;
            AltName: Full=Peroxisomal proliferator-activated receptor
            A-interacting complex 320 kDa protein
 gi|187954623|gb|AAI40816.1| CHD9 protein [Homo sapiens]
          Length = 2897

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|148693261|gb|EDL25208.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Mus
            musculus]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|119609183|gb|EAW88777.1| chromodomain helicase DNA binding protein 4, isoform CRA_a [Homo
            sapiens]
          Length = 1911

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|119609185|gb|EAW88779.1| chromodomain helicase DNA binding protein 4, isoform CRA_c [Homo
            sapiens]
          Length = 1908

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1062 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1121

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1122 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1175

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1176 SVEERITQVAKKKMML 1191


>gi|73997438|ref|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 21 [Canis familiaris]
          Length = 1889

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1042 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1101

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1102 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1155

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1156 SVEERITQVAKKKMML 1171


>gi|73997434|ref|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 19 [Canis familiaris]
          Length = 1887

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1040 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1099

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1100 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1153

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1154 SVEERITQVAKKKMML 1169


>gi|73986608|ref|XP_867733.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 8
            [Canis familiaris]
          Length = 1593

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1057 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1116

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1117 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1170

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1171 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1210


>gi|73997412|ref|XP_867794.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 8 [Canis familiaris]
          Length = 1883

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1039 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1098

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1099 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1152

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1153 SVEERITQVAKKKMML 1168


>gi|327276401|ref|XP_003222958.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like isoform 1
            [Anolis carolinensis]
          Length = 2892

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            K+    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1191 KSGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1250

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 1251 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 1304

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1305 RNSYEREMFDRASLKLGLDKAVLQSM 1330


>gi|254581362|ref|XP_002496666.1| ZYRO0D05346p [Zygosaccharomyces rouxii]
 gi|238939558|emb|CAR27733.1| ZYRO0D05346p [Zygosaccharomyces rouxii]
          Length = 1093

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 53   DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              KI  L  I+          +++   F   L  L+                  ++    
Sbjct: 915  SGKIDKLCEILHHIIVEKKEKVLIFSLFTQMLDILELVLSTLNYKFLRLDGSTQVNDRQS 974

Query: 100  TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I ++ E  KIP+      + G G+NL    N+++F       +      +R    R  +
Sbjct: 975  LIDKFYEDEKIPIFILSTKAGGFGINLVCANNVIIFD------QSFNPHDDRQAADRSHR 1028

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             G  + V +  L+ +++I+E + Q  + K  +
Sbjct: 1029 VGQTKEVTITTLVTKDSIEEKIFQLAKNKLDL 1060


>gi|171687365|ref|XP_001908623.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943644|emb|CAP69296.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1001

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAY 75
             ++A +     + C        +   +  W E    K+K+L  +I   + N    +V  
Sbjct: 782 NELKALSDFELHLWCRDYKCIRSFDLPDGSWGEC--AKVKSLLKLIRGYQKNGDRALVFT 839

Query: 76  HFNSDLARLQKAF---------PQGRT-LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
            F   +  L +            QG T + +    I ++N +  IP+      S G G+N
Sbjct: 840 RFAKVIEILGECLASEGVEYLSLQGNTDVSERQELINQFNADPTIPVFLLTTGSGGTGIN 899

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    N ++ F    + ++  Q        R  + G  R V +  LI++ T++ELV +  
Sbjct: 900 LT-AANKVIIFDQSDNPQDDIQA-----ENRAHRLGQTRPVEIVRLISEGTVEELVYKAC 953

Query: 185 RTKSTIQDLL 194
           + K  + + +
Sbjct: 954 QKKLELANKV 963


>gi|169790814|ref|NP_001013626.2| RAD26L hypothetical protein isoform 1 [Mus musculus]
          Length = 1537

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 505 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 564

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 565 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 619 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 650


>gi|156548320|ref|XP_001602898.1| PREDICTED: similar to chromodomain helicase DNA binding protein
            [Nasonia vitripennis]
          Length = 4629

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDK-----DPCTIQEWNEGKIP--LL 112
            KA+   ++V       L  L+     K +P  R   +         I  +++      + 
Sbjct: 2206 KASGHRVLVFSQMVKCLDLLEDYLVYKKYPYERIDGRIRGNLRQAAIDRYSKPDSDRFVF 2265

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++ +   W+ +   Q   R       + G ++ V VY L+ 
Sbjct: 2266 LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLLC 2319

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +NT +  +  +   K  +   +L ++
Sbjct: 2320 RNTYEREMFDKASLKLGLDKAILQSM 2345


>gi|149733277|ref|XP_001502820.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Equus
           caballus]
          Length = 2717

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|119613041|gb|EAW92635.1| RAD26L hypothetical protein, isoform CRA_a [Homo sapiens]
          Length = 700

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 507 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 566

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 567 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 620

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 621 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLH 652


>gi|50310795|ref|XP_455420.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644556|emb|CAG98128.1| KLLA0F07513p [Kluyveromyces lactis]
          Length = 1048

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDK 96
            +  K++ L+     II+  +   ++V   F   L  L+               Q +  D+
Sbjct: 870  NSGKVEQLKSVLHKIIDIQHEK-VLVFSLFTQVLDILEFVLSTLNIKFLRLDGQTQVNDR 928

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 + + +  IP+      + G G+NL    N+++F       +      +R    R 
Sbjct: 929  QSLIDRFYEDDTIPVFLLSTKAGGFGINLVCANNVIIFD------QSFNPHDDRQAADRA 982

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G  + V V  LI+++TI+E +L   + K  +   +    KK
Sbjct: 983  HRVGQTKEVQVTTLISRDTIEEKILHLAKNKLALDTHISQEDKK 1026


>gi|33641444|gb|AAQ24287.1| chromatin remodeling factor CHROM1 [Homo sapiens]
 gi|219521584|gb|AAI44623.1| CHD9 protein [Homo sapiens]
          Length = 2897

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|330804465|ref|XP_003290215.1| hypothetical protein DICPUDRAFT_98608 [Dictyostelium purpureum]
 gi|325079679|gb|EGC33268.1| hypothetical protein DICPUDRAFT_98608 [Dictyostelium purpureum]
          Length = 1514

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 23/169 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-------------Q 90
             +K  ++  DE++  L  + E  N    +V   +   L  +++ F               
Sbjct: 1215 SQKQIEKERDEELSKLP-LPEGKNQFKCLVFSQWTRFLDLIEECFKHNGWNLDEHYCRYD 1273

Query: 91   GRT-LDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G+  L K    I+E+    G   ++       G GLNL +  N++     +W+    +Q 
Sbjct: 1274 GKVPLKKRESIIKEFSRESGGPRVMLISLKCGGVGLNL-HRANMVYMCDPYWNSAVEEQA 1332

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R+      +    R + +   + ++TI+E ++    TK    +++L+
Sbjct: 1333 IGRVD-----RLNQTRDLKIKRFVMRDTIEERIMALQDTKKINSNIILS 1376


>gi|301771978|ref|XP_002921403.1| PREDICTED: transcription activator BRG1-like isoform 1 [Ailuropoda
            melanoleuca]
          Length = 1639

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|149049421|gb|EDM01875.1| chromodomain helicase DNA binding protein 4, isoform CRA_d [Rattus
           norvegicus]
          Length = 659

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 117 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 176

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 177 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 230

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 231 SVEERITQVAKKKMML 246


>gi|73986640|ref|XP_867859.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 23
            [Canis familiaris]
 gi|73986642|ref|XP_533915.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 1
            [Canis familiaris]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|505088|dbj|BAA05143.1| transcriptional activator hSNF2b [Homo sapiens]
 gi|902046|gb|AAB40977.1| transcriptional activator [Homo sapiens]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|327296351|ref|XP_003232870.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
 gi|326465181|gb|EGD90634.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
          Length = 1019

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 621 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFLI 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 681 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 734

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 735 TIEEIVYARQIYKQQQAN 752


>gi|297698733|ref|XP_002826464.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Pongo abelii]
          Length = 2898

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|114662475|ref|XP_001165675.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 3 [Pan
            troglodytes]
 gi|114662477|ref|XP_001165704.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 4 [Pan
            troglodytes]
          Length = 2898

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|326668862|ref|XP_699360.4| PREDICTED: chromodomain-helicase-DNA-binding protein 6 [Danio
           rerio]
          Length = 2902

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWN--EGKIPLLF 113
           A    ++V       L  L+    Q R T ++             I  ++  +    +  
Sbjct: 813 AGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFSKVDSDRFVFL 872

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 873 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 926

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 927 NSYEREMFDKASLKLGLDKAVLQDINRKG 955


>gi|296232911|ref|XP_002761790.1| PREDICTED: transcription activator BRG1 [Callithrix jacchus]
          Length = 1679

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|294948918|ref|XP_002785960.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
           marinus ATCC 50983]
 gi|239900068|gb|EER17756.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
           marinus ATCC 50983]
          Length = 876

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            +   QR L      + +   N   +  K  Q     +   +          K + L+ +
Sbjct: 552 MHQIMQRALCGGHGEQKVALRNVLMQLRKMAQHPYLFLDEYDINDDLVRVSGKFELLDRL 611

Query: 63  IEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--- 107
           + K       +++       L  L++                +L+     +  +N+    
Sbjct: 612 VPKLLHFNHKVLIFSQMTCLLDILEQFLENKGLQWFRLDGSTSLEDRQSAMHRFNDPLNH 671

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNLQ   N ++ +   W+ +   Q ++R       + G K  V V
Sbjct: 672 DTNIFLLSTRAGGLGLNLQ-AANTVILYDSDWNPQMDLQAMDR-----AHRVGQKSDVIV 725

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L     I+ L+LQ+  TK  I   ++  
Sbjct: 726 LRLTGMCPIERLILQKATTKRNIDKKVIQG 755


>gi|126333962|ref|XP_001368542.1| PREDICTED: similar to RAD26L hypothetical protein, [Monodelphis
           domestica]
          Length = 1569

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   K N   +++       L  L++             G T  ++    
Sbjct: 521 SGKMKVLQQLLNHCKKNRDKVLLFSFSTKLLDVLEQYCMATGLDYRRLDGSTKSEERVKI 580

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    I +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 581 VKEFNSTQDINICLVSTMAGGLGLNF-VGANVVVIFDPTWNPANDLQAIDR-----AYRI 634

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 635 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLH 666


>gi|192807323|ref|NP_001122321.1| transcription activator BRG1 isoform A [Homo sapiens]
 gi|10946129|gb|AAG24790.1|AF254822_2 SMARCA4 isoform 2 [Homo sapiens]
 gi|119604570|gb|EAW84164.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_c [Homo
            sapiens]
          Length = 1679

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|326477646|gb|EGE01656.1| DNA excision repair protein [Trichophyton equinum CBS 127.97]
          Length = 1019

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 621 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFLI 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 681 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 734

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 735 TIEEIVYARQIYKQQQAN 752


>gi|296485891|gb|DAA28006.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a4 [Bos taurus]
          Length = 1605

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1070 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1129

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1130 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1183

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1184 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223


>gi|224064310|ref|XP_002193588.1| PREDICTED: chromodomain helicase DNA binding protein 9 [Taeniopygia
           guttata]
          Length = 2346

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 665 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 724

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI 
Sbjct: 725 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLIT 778

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 779 RNSYEREMFDRASLKLGLDKAVLQSM 804


>gi|157785561|ref|NP_001099084.1| transcription activator BRG1 [Bos taurus]
 gi|288559138|sp|A7Z019|SMCA4_BOVIN RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|157278973|gb|AAI53217.1| SMARCA4 protein [Bos taurus]
          Length = 1606

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1070 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1129

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1130 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1183

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1184 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223


>gi|21071056|ref|NP_003063.2| transcription activator BRG1 isoform B [Homo sapiens]
 gi|192807312|ref|NP_001122316.1| transcription activator BRG1 isoform B [Homo sapiens]
 gi|116242792|sp|P51532|SMCA4_HUMAN RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Mitotic growth and transcription activator; AltName:
            Full=Protein BRG-1; AltName: Full=Protein brahma homolog
            1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related
            matrix-associated actin-dependent regulator of chromatin
            subfamily A member 4
 gi|10946128|gb|AAG24789.1|AF254822_1 SMARCA4 isoform 1 [Homo sapiens]
 gi|119604568|gb|EAW84162.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Homo
            sapiens]
 gi|152013071|gb|AAI50299.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Homo sapiens]
 gi|158261089|dbj|BAF82722.1| unnamed protein product [Homo sapiens]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|326473181|gb|EGD97190.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
          Length = 1019

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     +  +N + +  +   
Sbjct: 621 ANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFLI 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 681 STKAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQLRDVEVFRLVSAG 734

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 735 TIEEIVYARQIYKQQQAN 752


>gi|297703590|ref|XP_002828720.1| PREDICTED: transcription activator BRG1-like isoform 2 [Pongo abelii]
          Length = 1647

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|297703588|ref|XP_002828719.1| PREDICTED: transcription activator BRG1-like isoform 1 [Pongo abelii]
          Length = 1679

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|119603200|gb|EAW82794.1| chromodomain helicase DNA binding protein 9, isoform CRA_b [Homo
            sapiens]
          Length = 2785

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|114558338|ref|XP_001157674.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|114558340|ref|XP_001157728.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 615

 Score = 85.0 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 14  MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 64

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 65  SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 124

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 125 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 178

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 179 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 215


>gi|301616286|ref|XP_002937591.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Xenopus
            (Silurana) tropicalis]
          Length = 1906

 Score = 84.6 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T       I  +N    +      
Sbjct: 1031 GGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL 1090

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1091 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1144

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1145 SVEERITQVAKRKMML 1160


>gi|255726412|ref|XP_002548132.1| hypothetical protein CTRG_02428 [Candida tropicalis MYA-3404]
 gi|240134056|gb|EER33611.1| hypothetical protein CTRG_02428 [Candida tropicalis MYA-3404]
          Length = 672

 Score = 84.6 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPCT- 100
             K + L+ I+ K   +   +++ +          D  R   ++     G T  +D    
Sbjct: 196 SGKFELLDRILPKFKKSGHRVLMFFQMTQVMDIMEDFLRWRNMKYLRLDGGTKAEDRQDM 255

Query: 101 IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N              + G GLNLQ   + +V F   W+  +  Q        R  +
Sbjct: 256 LKVFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQDLQA-----QDRAHR 309

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 310 IGQKNEVRILRLITNDSVEEMILERAHQKLDIDGKVIQAGK 350


>gi|67763824|ref|NP_033236.2| helicase-like transcription factor isoform 1 [Mus musculus]
 gi|60390920|sp|Q6PCN7|HLTF_MOUSE RecName: Full=Helicase-like transcription factor; AltName:
           Full=P113; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3; AltName:
           Full=TNF-response element-binding protein
 gi|34785644|gb|AAH57116.1| Helicase-like transcription factor [Mus musculus]
 gi|37590668|gb|AAH59240.1| Helicase-like transcription factor [Mus musculus]
 gi|148702945|gb|EDL34892.1| mCG123397, isoform CRA_c [Mus musculus]
          Length = 1003

 Score = 84.6 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 23/181 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE-VIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL 94
           A   D+E   +     KI AL   +IE     P    +V   F + L+ ++        +
Sbjct: 812 ACDSDKESSMEWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFV 871

Query: 95  ----------DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 872 FTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNL-CAASRVFLMDPAWNP 930

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q  +R       + G K+ V +   I +++++E +L+   TK  +        K +
Sbjct: 931 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTD 985

Query: 202 T 202
            
Sbjct: 986 A 986


>gi|171691859|ref|XP_001910854.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945878|emb|CAP72679.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1274

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 37/226 (16%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL----ANGAVYYDE----------EK 46
            M++  +  R ++       ++A    S +   +QL     +  +Y              +
Sbjct: 795  MEKNPQLIRSIFAQ---GKLKANERGSLSNILMQLRKCLCHPFIYSQAIEDRNLSPELTR 851

Query: 47   HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTL 94
                    K+  LE+++ K       +++   F   L  L+          +     ++ 
Sbjct: 852  RNLIEASSKLMLLEIMLPKLKERGHRVLIFSQFLDQLTVLEDFLMSLNLRHERLDGSQSS 911

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    I  +N     +        + G G+NL    + ++     W+  +  Q + R  
Sbjct: 912  LEKQKKIDAYNAPDSDIFCMLLSTRAGGVGINL-ATADTVIILDPDWNPHQDIQALSR-- 968

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                 + G ++ V  + L+  ++ +E +LQ  R K  +  LL+  +
Sbjct: 969  ---AHRIGQRKKVLCFQLVTVDSAEEKILQIGRKKMALDHLLIETM 1011


>gi|126322839|ref|XP_001362962.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily a, member 4,
            isoform 2 [Monodelphis domestica]
          Length = 1612

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1077 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1136

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1137 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1190

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1191 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1230


>gi|73997444|ref|XP_867907.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 23 [Canis familiaris]
          Length = 1895

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1048 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1107

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1108 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1161

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1162 SVEERITQVAKKKMML 1177


>gi|15079181|ref|NP_149635.1| 172L [Invertebrate iridescent virus 6]
 gi|82013408|sp|O55764|172L_IIV6 RecName: Full=Putative helicase 172L
 gi|15042550|gb|AAA62412.2| 172L [Invertebrate iridescent virus 6]
          Length = 606

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
            E ++   IIV   F S L  L +A  +           G T ++     Q  N+     
Sbjct: 443 FEISHPTKIIVFSMFTSCLDLLSEAIKEDYPNFKFVQVDGDTKNRSELFDQFKNDINTQG 502

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           LF        GLNL    + +     WW    H Q   R+      + G  + V+V+ +I
Sbjct: 503 LFLTYKVGSEGLNLTEATHCIC-IEPWWTNAVHNQAKARLW-----RTGQTKQVYVHNVI 556

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + +I+E +++  + K  +    L   ++
Sbjct: 557 IEGSIEEKIVEICKGKDDMAASYLEGKER 585


>gi|261860470|dbj|BAI46757.1| chromodomain helicase DNA binding protein 9 [synthetic construct]
          Length = 2012

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 309 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 368

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 369 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 422

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 423 RNSYEREMFDRASLKLGLDKAVLQSM 448


>gi|329663886|ref|NP_001192579.1| chromodomain-helicase-DNA-binding protein 9 [Bos taurus]
 gi|297485264|ref|XP_002694824.1| PREDICTED: kismet-like [Bos taurus]
 gi|296478067|gb|DAA20182.1| kismet-like [Bos taurus]
          Length = 2883

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1196 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1255

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1256 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1309

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1310 RNSYEREMFDRASLKLGLDKAVLQSM 1335


>gi|194386148|dbj|BAG59638.1| unnamed protein product [Homo sapiens]
          Length = 693

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 91  MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 142

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 143 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 202

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 203 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 256

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 257 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|73997446|ref|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 24 [Canis familiaris]
          Length = 1892

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1045 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1104

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1105 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1158

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1159 SVEERITQVAKKKMML 1174


>gi|82704891|ref|XP_726740.1| helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482279|gb|EAA18305.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
           yoelii]
          Length = 1472

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLL 112
           +A    +++   F   L  L+     + +   R             I+E+N       + 
Sbjct: 41  EAKMHKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIY 100

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    N ++ +   W+     Q I+R       + G KR V V+ L+ 
Sbjct: 101 LISTRAGGLGINLT-AANHVIMYDEDWNPFIDLQAIDR-----AHRIGQKREVNVWKLMT 154

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + T++E +  R   K  +  L++   + E
Sbjct: 155 EWTVEERMAFRREQKLKLDKLVVQTQEDE 183


>gi|332028347|gb|EGI68394.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Acromyrmex echinatior]
          Length = 845

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           K+K L+ I+ +   +   +++   F   L  L++                 + +    I 
Sbjct: 647 KLKELDKILPQLKTDGHRVLIFSQFTMVLDILEEYLTIRGQTFLRLDGSTPVTERQTLIN 706

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++  +  I +      + G G+NL    + ++   + ++    +Q  +R       + G 
Sbjct: 707 KYTEDPSIFIFLLSTRAGGLGINLT-AADTVILHDIDFNPYNDKQAEDRC-----HRVGQ 760

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           K+ V +  L+++ TI+E + +  + K  ++  +
Sbjct: 761 KKPVSIIRLLSEGTIEEGMYEIAQEKLHLEQQI 793


>gi|297283992|ref|XP_002808345.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Macaca mulatta]
          Length = 2901

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|330417956|ref|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 [Bos taurus]
 gi|296487143|gb|DAA29256.1| chromodomain helicase DNA binding protein 4 [Bos taurus]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|73997448|ref|XP_534909.2| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 1 [Canis familiaris]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|73997402|ref|XP_867754.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 3 [Canis familiaris]
          Length = 1905

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|73997420|ref|XP_867825.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 12 [Canis familiaris]
          Length = 1925

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|71663704|ref|XP_818842.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884114|gb|EAN96991.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1455

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEW-NEGKIP 110
           IIE+ +   +++   + S L  L++   +   L                I+ +  +  I 
Sbjct: 483 IIEELHEK-VVLFSTYRSHLFLLKQLLRKRGLLADVMHGGLDVKDRQRIIERFTEDASIS 541

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G G+NL    N  + F + W+  +  Q   R+      + G +R V VY +
Sbjct: 542 VLLCSTKASGVGINL-VAANHCILFDVSWNPADDTQATYRL-----YRYGQQRPVTVYRI 595

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
               T + +V     +K+ +   +++
Sbjct: 596 ATDGTFEHVVFFYALSKTWLHKKIVD 621


>gi|331088936|ref|ZP_08337845.1| hypothetical protein HMPREF1025_01428 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406534|gb|EGG86042.1| hypothetical protein HMPREF1025_01428 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 557

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 28/207 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++ +   L+ + +++ N  S T++  QL  G    D           K+  ++ +
Sbjct: 350 LYRDIKQGIVEQLE-DILQSVNPLSCTLRLRQLTGGLFTEDNP---------KLDRIKDM 399

Query: 63  IEKA---NAAPIIVAYHFNSD----LARLQKAFP-----QGRTLDKDPCTIQEWNEGKIP 110
           +E+    N    I+   + S     L  L+   P     +    ++     +   + +  
Sbjct: 400 LEEEIIPNGNKAIIFSQWESITSVYLEALRAYNPIYITGKVTPEERQKEVDRFQTDPECK 459

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G GL L     +     LW   E  Q         R  + G    V V  +
Sbjct: 460 LAIGTIGAMGTGLTLNKASYVFFVDKLWNSGENAQ------AEDRAHRIGTAGTVNVISM 513

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +A+ ++DE V + L     + D +++ 
Sbjct: 514 VAKGSVDEGVEEYLLENKELFDRVVDG 540


>gi|328771548|gb|EGF81588.1| hypothetical protein BATDEDRAFT_183 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 1186

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC-TIQ 102
           K + L+ I+ K   +   I++ +     +  ++              G T  ++    ++
Sbjct: 712 KFELLDRILPKFKVSGHRILMFFQMTQVMDIMEDYLRWRGHIYLRLDGHTKPEERTVMLK 771

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N    P  +      + G GLNLQ   + ++ +   W+  +  Q        R  + G
Sbjct: 772 TFNRPDDPPFIFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQDLQA-----QDRAHRIG 825

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K+ V +  LI   +++E +L R + K  I   ++ A K
Sbjct: 826 QKKEVRILRLITSKSVEETILARAQYKLDIDGKVIQAGK 864


>gi|301773764|ref|XP_002922290.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 4-like [Ailuropoda melanoleuca]
          Length = 1906

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1059 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1118

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1119 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1172

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1173 SVEERITQVAKKKMML 1188


>gi|301752864|ref|XP_002912282.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like
            [Ailuropoda melanoleuca]
          Length = 2885

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1197 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1257 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1310

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1311 RNSYEREMFDRASLKLGLDKAVLQSM 1336


>gi|297690951|ref|XP_002822857.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 4-like [Pongo abelii]
          Length = 1879

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1047 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1106

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1107 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1160

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1161 SVEERITQVAKKKMML 1176


>gi|296231077|ref|XP_002807783.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Callithrix jacchus]
          Length = 2896

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1195 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1254

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1255 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1308

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1309 RNSYEREMFDRASLKLGLDKAVLQSM 1334


>gi|51599156|ref|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Homo sapiens]
 gi|311033360|sp|Q14839|CHD4_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
            Short=CHD-4; AltName: Full=ATP-dependent helicase CHD4;
            AltName: Full=Mi-2 autoantigen 218 kDa protein; AltName:
            Full=Mi2-beta
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|1107696|emb|CAA60384.1| Mi-2 protein [Homo sapiens]
 gi|119609184|gb|EAW88778.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Homo
            sapiens]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|291392737|ref|XP_002712922.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 1
            [Oryctolagus cuniculus]
          Length = 1905

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1117

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1118 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1171

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1172 SVEERITQVAKKKMML 1187


>gi|255519616|dbj|BAA86436.2| KIAA1122 protein [Homo sapiens]
          Length = 1040

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 865  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 924

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 925  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 978

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 979  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1015


>gi|45384232|ref|NP_990390.1| BRG1 protein [Gallus gallus]
 gi|996018|emb|CAA62831.1| BRG1 protein [Gallus gallus]
          Length = 1630

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1075 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1134

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1135 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1188

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1189 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1228


>gi|291392739|ref|XP_002712923.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 2
            [Oryctolagus cuniculus]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|50866|emb|CAA49560.1| enhancer-trap-locus-1 [Mus musculus]
          Length = 1136

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 67   NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQEWNEG-KIPLLFAH 115
                +++   F   L  L         +     G+T + +    I E+N    I +    
Sbjct: 979  KGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLS 1038

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    N+++   +  +    +Q  +R       + G  + V V  LI+Q T
Sbjct: 1039 TKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----HRVGQTKEVLVIKLISQGT 1092

Query: 176  IDELVLQRLRTKSTIQDLL 194
            I+E +L+  + K  ++  +
Sbjct: 1093 IEESMLKINQQKLKLEQDM 1111


>gi|307564877|ref|ZP_07627402.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346413|gb|EFN91725.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
          Length = 477

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 15/152 (9%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PCTIQEWNE 106
           KI      I     +   +IV    +  +  L K FP+  T+            +  +  
Sbjct: 311 KIAQAIDFISTFLESGKKLIVFCSLHEIVDELCKTFPKAVTVTGRDSAVNKQAAVDAFQT 370

Query: 107 GKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G+   L      + G GL L    + + F  L W + +  Q  +R       + G    V
Sbjct: 371 GENTRLIICSIKAAGVGLTLTAASD-VAFCELPWTMADCCQCEDR-----AHRIGQNDNV 424

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             YYL+ + TID  +   ++ K +I   ++N+
Sbjct: 425 NCYYLLGRGTIDNTIYSLIQRKKSIAKEIMNS 456


>gi|302679614|ref|XP_003029489.1| hypothetical protein SCHCODRAFT_111676 [Schizophyllum commune H4-8]
 gi|300103179|gb|EFI94586.1| hypothetical protein SCHCODRAFT_111676 [Schizophyllum commune H4-8]
          Length = 1059

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLD-----KDPCTIQEWN 105
           +  L   I +     ++   H+ S L  L     +K +   R        K    + ++N
Sbjct: 730 VSKLLKYIYEHTDEKVVFVSHYTSSLNILSAYCDRKRYKYNRLDGNTPPAKRQEYVNQFN 789

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +      F    S G G+NL  G + L+ F   W+     Q   R       + G KR V
Sbjct: 790 KSTQRSNFIFLLS-GVGINLT-GASRLILFDCDWNPSYDLQSAARC-----HRDGQKRPV 842

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            VY  +    IDE + QR  TK
Sbjct: 843 HVYRFMTAGLIDEKIYQRQVTK 864


>gi|195428619|ref|XP_002062369.1| GK17504 [Drosophila willistoni]
 gi|194158454|gb|EDW73355.1| GK17504 [Drosophila willistoni]
          Length = 2023

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK------DPCTIQ 102
            K+  L  ++++  +    +++       L  L+        +   +D           I 
Sbjct: 1064 KLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGAVRQEAID 1123

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +  +      + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 1124 RFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 1177

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                V +Y  + +N+++E V Q  + K  +
Sbjct: 1178 QANKVMIYRFVTRNSVEERVTQVAKRKMML 1207


>gi|71891786|dbj|BAA20767.3| KIAA0308 [Homo sapiens]
          Length = 2759

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1072 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1131

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1132 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1185

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1186 RNSYEREMFDRASLKLGLDKAVLQSM 1211


>gi|328869121|gb|EGG17499.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1301

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKIPLLFA 114
                I++       L  +Q                   T ++     +  N+        
Sbjct: 866  EGHRILIFSQSVKMLNAIQLLLDTLNLSYLRIDGSITSTKERQKRIDEYNNDSSYFCFLL 925

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                   GLNL     +L+ F   W        ++   V R  + G KR V VY LI   
Sbjct: 926  TIQVGALGLNLTSADRVLI-FDPSWT------TVDNQAVDRVYRIGQKRDVVVYRLITCG 978

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            TI+E + ++   K ++   +LN  K +  +
Sbjct: 979  TIEEKIYRKQVFKGSLMKSMLNQDKGQHRY 1008


>gi|327355372|gb|EGE84229.1| DNA excision repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1026

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFA 114
            N   ++V  H    L  LQ  F              + D     +  +N + +  +   
Sbjct: 628 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYDDRTKAVDSFNADPREFVFLI 687

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 688 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQSRDVEVFRLVSAG 741

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 742 TIEEIVYARQIYKQQQAN 759


>gi|296189487|ref|XP_002742800.1| PREDICTED: hypothetical protein LOC100415645 [Callithrix jacchus]
          Length = 1546

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 506 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 565

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 566 VKEFNSTQDVNICLVSTMAGGLGLNF-IGANVVVLFDPTWNPANDLQAIDR-----AYRI 619

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 620 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 651


>gi|149020473|gb|EDL78278.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_b [Rattus
            norvegicus]
          Length = 1614

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|156717248|ref|NP_001096166.1| chromodomain helicase DNA binding protein 4 [Xenopus (Silurana)
            tropicalis]
 gi|126631946|gb|AAI33720.1| chd4 protein [Xenopus (Silurana) tropicalis]
          Length = 1888

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
            K+  L+ ++ K   +   +++       L  L+          +    G T +     I 
Sbjct: 1041 KLLLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAID 1100

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N    +         + G G+NL    + +V +   W+     Q       +R  + G
Sbjct: 1101 RFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNPHNDIQA-----FSRAHRIG 1154

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + V +Y  + + +++E + Q  + K  +
Sbjct: 1155 QNKKVMIYRFVTRASVEERITQVAKKKMML 1184


>gi|73986638|ref|XP_867851.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 22
            [Canis familiaris]
          Length = 1643

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|81914599|sp|Q8K1P7|SMCA4_RAT RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|22095171|emb|CAD43278.1| brahma-related protein 1 [Rattus norvegicus]
          Length = 1613

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|311256289|ref|XP_003126577.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Sus
            scrofa]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|281346617|gb|EFB22201.1| hypothetical protein PANDA_000001 [Ailuropoda melanoleuca]
          Length = 2901

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1197 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1257 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1310

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1311 RNSYEREMFDRASLKLGLDKAVLQSM 1336


>gi|194375514|dbj|BAG56702.1| unnamed protein product [Homo sapiens]
          Length = 616

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC- 99
              K+  L+ ++    +    +++       L  LQ              G    ++   
Sbjct: 64  ASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHL 123

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + 
Sbjct: 124 AIKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRI 177

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 178 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 215


>gi|47211680|emb|CAF92844.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 295

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 31/123 (25%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ W   +  +      + G GLNL  G N LV F   W+    +Q + R+      
Sbjct: 84  ASPLRLWQSPE-FIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW----- 136

Query: 158 QAGFKRAVFVYYLIA------------------------QNTIDELVLQRLRTKSTIQDL 193
           + G ++  ++Y L+A                          TI+E +LQR   K  +   
Sbjct: 137 RDGQRKTCYIYRLLAVRAAQTRCRRRRCAAVTGVCVCPQTGTIEEKILQRQAHKKALSSC 196

Query: 194 LLN 196
           +++
Sbjct: 197 VVD 199


>gi|194211609|ref|XP_001496418.2| PREDICTED: chromodomain helicase DNA binding protein 4 [Equus
            caballus]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|328773732|gb|EGF83769.1| hypothetical protein BATDEDRAFT_85620 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1065

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 69/205 (33%), Gaps = 26/205 (12%)

Query: 7    FQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIKALEV 61
              R+   + +   I     N+ + + +     +  ++       +  K +  +K+  L  
Sbjct: 846  MCRQSCAESELMKILETQQNANATSPRLFASKDAPLHAGSTIRLQSIKSIPSKKLNTLTN 905

Query: 62   ----IIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG 107
                + +       +V   +   L  ++                 +       +  +   
Sbjct: 906  DLLTLQKSDPKIKSVVFSQWTRMLDLVEISMREHGINFVRMDGSLSQKNREKVLHTFKTD 965

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              + +L A   S G GLNL    + +     WW+     Q I+R+      + G  + V 
Sbjct: 966  DTVTVLLATLRSTGVGLNLTV-ASCVFMLDPWWNESVEFQAIDRV-----HRIGQNKPVT 1019

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQ 191
            V   I +N+++E +L+    K+ + 
Sbjct: 1020 VTRYIMRNSVEEKMLEIQHRKAQLA 1044


>gi|327300653|ref|XP_003235019.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
 gi|326462371|gb|EGD87824.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
          Length = 920

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 24/182 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEK---ANAAPIIVAYHFNS 79
           ++   C +L + A  + E+ +  +V       KI+AL  I+     A     +V   + S
Sbjct: 717 AEIKDCSELVSPAAEFGEDCNQVDVESDSSSSKIQALVKILTAKGQATGTKTVVFSQWTS 776

Query: 80  DLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++               +  +  +D    +   + +  ++ A    C  GLNL   
Sbjct: 777 FLDLIEPHLVLYNINFARIDGKMNSAKRDAAMGKFSRDSECTVMLASLNVCSVGLNL-VA 835

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +V    WW      Q ++R+      + G  R   ++ L+ +N+I++ VL   + K 
Sbjct: 836 ANQVVLADSWWAPAIEDQAVDRV-----YRLGQTRPTTIWRLVMENSIEDRVLDIQKEKR 890

Query: 189 TI 190
            +
Sbjct: 891 EL 892


>gi|290343601|ref|YP_003494968.1| hypothetical protein OTV1_129 [Ostreococcus tauri virus 1]
 gi|260161016|emb|CAY39717.1| hypothetical protein OTV1_129 [Ostreococcus tauri virus 1]
          Length = 483

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWNEG--- 107
             K++ L  +I+       +V   F  ++  +Q+    P  R     P   ++       
Sbjct: 305 SNKMETLFRMIKSHPDEKTLVFCQFKGEMDYIQRNLECPTFRIDGSVPKEERDNQVNAFK 364

Query: 108 KIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           K P   +      S G GLNLQ    + +     W+     Q I R       + G  + 
Sbjct: 365 KAPPGAVFIIQIKSGGQGLNLQEATRVYI-TGPSWNPATELQAIGR-----AHRTGQSKP 418

Query: 165 VFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNALKKE 201
           V+V  LI +      +++E +L     KS +   +LN  + E
Sbjct: 419 VYVKKLIYKEGDAFISVEEEILALQGHKSIVCSKVLNDERIE 460


>gi|209954670|ref|NP_599195.1| transcription activator BRG1 [Rattus norvegicus]
          Length = 1613

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|314055214|ref|YP_004063552.1| SNF2/helicase domain protein [Ostreococcus tauri virus 2]
 gi|313575105|emb|CBI70118.1| SNF2/helicase domain protein [Ostreococcus tauri virus 2]
          Length = 513

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWN----- 105
             K++ L  +I+       +V   F  ++  +Q+    P  R     P   ++       
Sbjct: 335 SNKMETLFNMIKAHPNEKTLVFCQFRGEMDYIQQNMECPTFRIDGSVPKDERDNQVIAFK 394

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      S G GLNLQ    + +     W+     Q + R       + G  + 
Sbjct: 395 KAPPGAVFIIQIKSGGQGLNLQEATRVYI-TGPSWNPATELQAVGR-----SHRTGQTKQ 448

Query: 165 VFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLLNALKKE 201
           V+V  LI + T     ++E ++     KS +   +LN  + E
Sbjct: 449 VYVKKLIYKETDTFVSVEEEMMALQGHKSIVCSKVLNDERIE 490


>gi|290978132|ref|XP_002671790.1| predicted protein [Naegleria gruberi]
 gi|284085362|gb|EFC39046.1| predicted protein [Naegleria gruberi]
          Length = 1069

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 18/142 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK-DPCTIQEWNE--GKIPLLFA 114
             + +++       L  L+              G+T  +     + E+N+      +   
Sbjct: 515 QNSRVLIFTQMTRMLDILEDYCYLRNYEYCRIDGQTSSELREQHMDEFNKEGSSKFIFLL 574

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ +   Q  +R       + G K+ V VY LI+++
Sbjct: 575 STRAGGLGINL-ATADTVIIYDSDWNPQADLQAQDRC-----HRIGQKKPVNVYRLISKD 628

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           +I+E + QR   K  +  +++ 
Sbjct: 629 SIEEKIYQRAVKKLYLDAVVIQ 650


>gi|195489519|ref|XP_002092773.1| GE11484 [Drosophila yakuba]
 gi|194178874|gb|EDW92485.1| GE11484 [Drosophila yakuba]
          Length = 1671

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N  G + L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 1016 ERERLVNEFNANGNVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1071

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  FVY ++    +++ +  R   K  + D +++
Sbjct: 1072 --YRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVD 1111


>gi|114558336|ref|XP_001157822.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           4 [Pan troglodytes]
          Length = 692

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 91  MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 141

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 142 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 201

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +    I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 202 IKNFGRQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 255

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 256 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|76253779|ref|NP_035547.2| transcription activator BRG1 isoform 2 [Mus musculus]
 gi|50927531|gb|AAH79560.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Mus musculus]
 gi|74181104|dbj|BAE27821.1| unnamed protein product [Mus musculus]
 gi|148693262|gb|EDL25209.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_b [Mus
            musculus]
          Length = 1614

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|169146018|emb|CAQ13521.1| novel protein similar to vertebrate chromodomain helicase DNA binding
            protein family [Danio rerio]
          Length = 2230

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            K+  L+ ++ +  A    +++       L  L+      R L          +     I 
Sbjct: 890  KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 949

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +++      +      + G G+NL    +  V F   W+ +   Q   R       + G
Sbjct: 950  RFSKPDSDRFVFLLCTRAGGLGINLT-AADTCVIFDSDWNPQNDLQAQARC-----HRIG 1003

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1004 QSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1041


>gi|170592228|ref|XP_001900871.1| CHD4 protein [Brugia malayi]
 gi|158591738|gb|EDP30342.1| CHD4 protein, putative [Brugia malayi]
          Length = 1846

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 67   NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEGKIP--LLFA 114
                +++       L  +         +     G    +     I  +N       +   
Sbjct: 961  QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQARQDAIDRFNAANAQQFVFLL 1020

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G ++ V +Y  + +N
Sbjct: 1021 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQQKKVLIYRFVTRN 1074

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +++E +    + K  +  L++ A
Sbjct: 1075 SVEERITSVAKKKMLLTHLVVRA 1097


>gi|291463269|ref|NP_001167549.1| transcription activator BRG1 isoform 1 [Mus musculus]
 gi|74144347|dbj|BAE36034.1| unnamed protein product [Mus musculus]
          Length = 1617

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|116207162|ref|XP_001229390.1| hypothetical protein CHGG_02874 [Chaetomium globosum CBS 148.51]
 gi|88183471|gb|EAQ90939.1| hypothetical protein CHGG_02874 [Chaetomium globosum CBS 148.51]
          Length = 1558

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              KI  L  I+++   A   ++V       L  ++  F + R           +     +
Sbjct: 1061 SNKIVVLLRILDECKKAKDKVLVFSQSIPTLDYIENIFKRKRVVYQRLDGSTKMSTRQAS 1120

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++N + +  +      S G GLN+ +G N +V F   +   + QQ I R       + 
Sbjct: 1121 VKKFNTDAESQVYLVSTRSGGVGLNI-HGANRVVIFDFKYSPTDEQQAIGR-----AYRL 1174

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V+VY+L    T ++ +      K+ +   +++
Sbjct: 1175 GQTKPVYVYWLTVGGTFEDTIHNNAIFKAQLAKRVVD 1211


>gi|296201335|ref|XP_002806848.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 3-like, partial [Callithrix jacchus]
          Length = 1916

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 1041 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1100

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1101 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1156

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1157 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1194


>gi|297261645|ref|XP_001107252.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform 8
            [Macaca mulatta]
          Length = 1912

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1125 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1178

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1179 SVEERITQVAKKKMML 1194


>gi|73986618|ref|XP_867778.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 13
            [Canis familiaris]
          Length = 1608

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1072 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1131

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1132 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1185

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1186 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1225


>gi|73986612|ref|XP_867753.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 10
            [Canis familiaris]
          Length = 1609

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1073 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1132

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1133 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1186

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1187 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1226


>gi|291463271|ref|NP_001167550.1| transcription activator BRG1 isoform 3 [Mus musculus]
 gi|123790047|sp|Q3TKT4|SMCA4_MOUSE RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|74184874|dbj|BAE39059.1| unnamed protein product [Mus musculus]
          Length = 1613

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|324508390|gb|ADY43542.1| Transcription termination factor 2 [Ascaris suum]
          Length = 693

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT- 100
             K+ AL   +++A       ++   + S L  ++    Q         G+ L KD    
Sbjct: 487 SAKLVALFERLDQALALGDKCVIVSQWTSLLDIVEYHLKQRDVQYTSITGKVLTKDRQPR 546

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N   G   ++     + G GLNL  G + L    L W+    QQ  +RI      +
Sbjct: 547 VESFNRVGGGARVMLLSLTAGGVGLNLVGGNH-LFLIDLHWNPALEQQACDRI-----YR 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            G  + VF++ +I   TI+E VL   ++K  +   +L     + +
Sbjct: 601 MGQTKEVFIHKIICLGTIEERVLTLQQSKMALAKGVLEGAASKKL 645


>gi|301771980|ref|XP_002921404.1| PREDICTED: transcription activator BRG1-like isoform 2 [Ailuropoda
            melanoleuca]
          Length = 1606

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|238062909|ref|ZP_04607618.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237884720|gb|EEP73548.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 795

 Score = 84.6 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
            ++      A+  A +  +   +   AV  D           K++ L  II++A  N   
Sbjct: 562 VEMGQAETRAYRRAVEARQFAHMRRAAVVIDGSVMP-----AKVERLREIIQEAADNGWK 616

Query: 71  IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
           ++V   F   L R++ +  +            +      + +++      +L +     G
Sbjct: 617 VVVFSFFLEVLERVRVSLQEDTPVFLLSGAVPVAARQQVVDDFSGTDGHAVLVSQIGVGG 676

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    +I+V           +Q I R       + G  R V V+ L+A+NT+D+ +
Sbjct: 677 VGLNL-PAASIVVLTEPQLTPAHEEQAIRRC-----YRMGQTRGVRVHRLLARNTVDQRL 730

Query: 181 LQRLRTKSTI 190
           L+ L  KS +
Sbjct: 731 LEMLERKSAL 740


>gi|302505721|ref|XP_003014567.1| hypothetical protein ARB_07129 [Arthroderma benhamiae CBS 112371]
 gi|291178388|gb|EFE34178.1| hypothetical protein ARB_07129 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 55  KIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCT 100
           KI+AL  I+     A     +V   + S L  ++               +  +  +D   
Sbjct: 750 KIQALVKILTAKGQAAGTKTVVFSQWTSFLDLIEPHLVLYNINFARIDGKMNSAKRDAAM 809

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +   + +  ++ A    C  GLNL    N +V    WW      Q ++R+      + G
Sbjct: 810 SKFSRDSECTVMLASLNVCSVGLNL-VAANQVVLADSWWAPAIEDQAVDRV-----YRLG 863

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             R   ++ L+ +N+I++ VL   + K  +
Sbjct: 864 QTRPTTIWRLVMENSIEDRVLDIQKEKREL 893


>gi|224043897|ref|XP_002197085.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            [Taeniopygia guttata]
          Length = 1919

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1059 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1118

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1119 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1172

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1173 SVEERITQVAKKKMML 1188


>gi|126340045|ref|XP_001369474.1| PREDICTED: similar to Mi-2 protein [Monodelphis domestica]
          Length = 1777

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 930  GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 989

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 990  STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1043

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1044 SVEERITQVAKKKMML 1059


>gi|328854066|gb|EGG03201.1| hypothetical protein MELLADRAFT_90365 [Melampsora larici-populina
           98AG31]
          Length = 863

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARL----QKAFP-------QGRTLDKDPCTIQEWNEGKIPLLFAH 115
             A +++   +   +  L    ++ FP       +  T ++     +   +    +  A 
Sbjct: 687 EGAKVLIFSQWTKMMDILSYWLEQDFPGFVRLDGKVPTAERMARVDEFQRDPDKFIFLAS 746

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    N +V F   W+     Q ++R+      + G KR+V    LIA  T
Sbjct: 747 TLAGGVGLNLT-AANKVVIFDPSWNPSSDAQAMDRVC-----RIGQKRSVECLRLIALGT 800

Query: 176 IDELVLQRLRTKSTIQD 192
            +EL+  R   K+ + +
Sbjct: 801 AEELIYHRQVYKTHLAE 817


>gi|322710278|gb|EFZ01853.1| putative DNA repair protein RAD26 [Metarhizium anisopliae ARSEF 23]
          Length = 1085

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE-WN-EGKIPLLFAH 115
           N   ++V  H    L  LQ  F           G    ++   + + +N +    +    
Sbjct: 567 NGDKVLVFSHSVRLLRILQHLFTSTSYNVSYLDGSLSYEERQDVVDTFNSDPAQFVFLIS 626

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+Q T
Sbjct: 627 TKAGGVGLNIT-SANKVVIVDPHWNPSYDLQA-----QDRAYRIGQTRDVEVFRLISQGT 680

Query: 176 IDELVLQRLRTKSTIQD 192
           ++E+V  R   K    +
Sbjct: 681 VEEIVYARQVYKQQQAN 697


>gi|302653552|ref|XP_003018600.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
 gi|291182257|gb|EFE37955.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
          Length = 1518

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                    K    I  +N    +       
Sbjct: 1006 GHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 1065

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 1066 TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 1119

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1120 AEEKIMQIGKKKMALDHVLIERM 1142


>gi|302504244|ref|XP_003014081.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
 gi|291177648|gb|EFE33441.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
          Length = 1518

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                    K    I  +N    +       
Sbjct: 1006 GHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 1065

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 1066 TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 1119

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1120 AEEKIMQIGKKKMALDHVLIERM 1142


>gi|261196956|ref|XP_002624881.1| DNA excision repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239596126|gb|EEQ78707.1| DNA excision repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 1026

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFA 114
            N   ++V  H    L  LQ  F              + D     +  +N + +  +   
Sbjct: 628 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYDDRTKAVDSFNADPREFVFLI 687

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 688 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQSRDVEVFRLVSAG 741

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 742 TIEEIVYARQIYKQQQAN 759


>gi|295675065|ref|XP_002798078.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280728|gb|EEH36294.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1074

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 858  YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 911

Query: 64   EKANAAPI--IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGK-I 109
            +    API  IV   + S L  +Q A                 L +    +  + +   +
Sbjct: 912  KSPEKAPIKSIVFSSWTSHLDLIQIALEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 971

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL  G    +     ++     Q ++R+      + G  R V    
Sbjct: 972  TILLATLGAGGVGLNLTSGSRAYIM-EPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1025

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
             I +++I+E + +  R K  + D+ LN
Sbjct: 1026 FIMKDSIEEKIAELARKKQQMADMSLN 1052


>gi|149049417|gb|EDM01871.1| chromodomain helicase DNA binding protein 4, isoform CRA_a [Rattus
           norvegicus]
          Length = 1003

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 117 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 176

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 177 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 230

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 231 SVEERITQVAKKKMML 246


>gi|73986604|ref|XP_867713.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 6
            [Canis familiaris]
          Length = 1610

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1074 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1133

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1134 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1187

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1188 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1227


>gi|326912771|ref|XP_003202720.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like
            [Meleagris gallopavo]
          Length = 1922

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1066 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1125

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1126 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1179

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1180 SVEERITQVAKKKMML 1195


>gi|311262809|ref|XP_003129366.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Sus scrofa]
          Length = 1027

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 852  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 911

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 912  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 965

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 966  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|149755450|ref|XP_001490674.1| PREDICTED: similar to Probable global transcription activator SNF2L4
            (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related
            matrix-associated actin-dependent regula isoform 1 [Equus
            caballus]
          Length = 1647

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A +  +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATSHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|149049418|gb|EDM01872.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
 gi|149049420|gb|EDM01874.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
 gi|149049423|gb|EDM01877.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
          Length = 679

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 117 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 176

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 177 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 230

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 231 SVEERITQVAKKKMML 246


>gi|145335288|ref|NP_172336.3| ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
 gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
 gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1479

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 36/183 (19%)

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KAFPQGR- 92
                  K+  L  I+  +       +V       L  ++             K + +G+ 
Sbjct: 1110 VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKD 1169

Query: 93   --------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       +    +  +NE     +        +   G+NL Y  N ++     W+ 
Sbjct: 1170 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNP 1228

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                Q I      R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++   ++
Sbjct: 1229 TYDLQAI-----FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD---RQ 1280

Query: 202  TIH 204
             +H
Sbjct: 1281 QVH 1283


>gi|114643071|ref|XP_508960.2| PREDICTED: chromodomain helicase DNA binding protein 4 isoform 3 [Pan
            troglodytes]
          Length = 1886

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1039 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1098

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1099 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1152

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1153 SVEERITQVAKKKMML 1168


>gi|114643073|ref|XP_001162478.1| PREDICTED: chromodomain helicase DNA binding protein 4 isoform 2 [Pan
            troglodytes]
          Length = 1893

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1046 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1105

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1106 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1159

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1160 SVEERITQVAKKKMML 1175


>gi|218199702|gb|EEC82129.1| hypothetical protein OsI_26164 [Oryza sativa Indica Group]
          Length = 816

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 52  HDEKIKALEV-----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTI 101
              KI AL +     +IE  N     V       L  L+      +   K         I
Sbjct: 649 TSTKIDALFLAYMFLLIESHNDVNGDVNDENT--LVNLKSGIKCVQLNGKMNIVEKGKAI 706

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             + N+    +      + G  LNL    + +     WW+     Q  +RI      + G
Sbjct: 707 DTFTNDPDCRIFLMSLKAGGVALNLTVASH-VFLMDPWWNPAVESQAQDRI-----HRIG 760

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + +     + ++T++E +LQ    K  + +
Sbjct: 761 QFKPIRSMRFVIKDTVEERILQLQEKKRLVFE 792


>gi|193785938|dbj|BAG54725.1| unnamed protein product [Homo sapiens]
          Length = 1886

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
                +++       L  L+          +    G T +     I  +N    +      
Sbjct: 1039 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 1098

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 1099 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 1152

Query: 175  TIDELVLQRLRTKSTI 190
            +++E + Q  + K  +
Sbjct: 1153 SVEERITQVAKKKMML 1168


>gi|73986622|ref|XP_867793.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 15
            [Canis familiaris]
          Length = 1618

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1082 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1141

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1142 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1195

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1196 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1235


>gi|73986624|ref|XP_867800.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 16
            [Canis familiaris]
          Length = 1594

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1059 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1118

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1119 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1173 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|73986598|ref|XP_867683.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 3
            [Canis familiaris]
 gi|73986644|ref|XP_867874.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 24
            [Canis familiaris]
          Length = 1614

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|126291802|ref|XP_001381614.1| PREDICTED: similar to chromodomain helicase DNA binding protein 6,
           [Monodelphis domestica]
          Length = 2716

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 794 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 853

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 854 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 907

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 908 NSYEREMFDKASLKLGLDKAVLQDINRKG 936


>gi|73949862|ref|XP_863483.1| PREDICTED: similar to chromodomain helicase DNA binding protein 9
            isoform 4 [Canis familiaris]
          Length = 2886

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1197 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1257 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1310

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1311 RNSYEREMFDRASLKLGLDKAVLQSM 1336


>gi|156055468|ref|XP_001593658.1| hypothetical protein SS1G_05086 [Sclerotinia sclerotiorum 1980]
 gi|154702870|gb|EDO02609.1| hypothetical protein SS1G_05086 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1012

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCT-IQEWN-EGKIPLLFAH 115
               +++  H    L  LQ          +F  G    +D    + ++N +    +    
Sbjct: 611 EGDKVLIFSHSVKLLRMLQHLFQSTSYNVSFLSGEMKYEDRQDTVDDFNYDPNQFIFLIS 670

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V F   W+     Q        R  + G  R V  + L++  T
Sbjct: 671 TKAGGVGLNIT-SANKVVIFDPNWNPSYDLQA-----QDRAYRIGQLRDVDSFRLVSAGT 724

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 725 IEEVVYARQIYKQQQAN 741


>gi|189521245|ref|XP_696641.3| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Danio rerio]
          Length = 2063

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
               K+  L+ ++ K       ++V       L  L+          +    G T      
Sbjct: 1073 ASGKLMLLQKMLRKLKEQGHRVLVFSQMTKMLDLLEDFLDSEGYKYERIDGGITGALRQE 1132

Query: 100  TIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N  G +         + G G+NL    + ++ F   W+     Q       +R  
Sbjct: 1133 AIDRFNAPGAVQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA-----FSRAH 1186

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1187 RIGQANKVMIYRFVTRASVEERITQVAKRKMML 1219


>gi|171693995|ref|XP_001911922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946946|emb|CAP73750.1| unnamed protein product [Podospora anserina S mat+]
          Length = 957

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 24/164 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
           L  +     +   I+   F + L     RL++A      LD      Q            
Sbjct: 794 LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIHHFMTNP 853

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 854 DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 907

Query: 168 YYLIAQNTIDELVLQRLRTKSTI-------QDLLLNALKKETIH 204
             L  +++++  ++     K+ +        D  +++L  E + 
Sbjct: 908 TRLCIEDSVESRMVLLQEKKTNMINSTINSDDAAMDSLSPEDLQ 951


>gi|192807316|ref|NP_001122318.1| transcription activator BRG1 isoform D [Homo sapiens]
 gi|167888966|gb|ACA09752.1| SMARCA4 isoform 4 [Homo sapiens]
 gi|307685613|dbj|BAJ20737.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [synthetic construct]
          Length = 1616

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73986620|ref|XP_867786.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 14
            [Canis familiaris]
          Length = 1605

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1069 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1128

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1129 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1182

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1222


>gi|83772693|dbj|BAE62821.1| unnamed protein product [Aspergillus oryzae]
          Length = 867

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +N   ++V  H    L  LQ  F              + +     + E+N + +  +   
Sbjct: 628 SNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMSYEDRATAVDEFNSDPRQFVFLI 687

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 688 STRAGGVGLNIT-SANKVVVVDPNWNPSYDLQA-----QDRAYRIGQVRDVEVFRLISAG 741

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 742 TIEEIVYARQIYKQQQAN 759


>gi|192807314|ref|NP_001122317.1| transcription activator BRG1 isoform C [Homo sapiens]
 gi|167888964|gb|ACA09751.1| SMARCA4 isoform 2 [Homo sapiens]
          Length = 1617

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|192807320|ref|NP_001122320.1| transcription activator BRG1 isoform F [Homo sapiens]
 gi|167888962|gb|ACA09750.1| SMARCA4 isoform 3 [Homo sapiens]
          Length = 1613

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|192807318|ref|NP_001122319.1| transcription activator BRG1 isoform E [Homo sapiens]
 gi|119604573|gb|EAW84167.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_f [Homo
            sapiens]
 gi|167888968|gb|ACA09753.1| SMARCA4 isoform 1 [Homo sapiens]
          Length = 1614

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73986606|ref|XP_867722.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 7
            [Canis familiaris]
          Length = 1598

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1062 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1121

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1122 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1175

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1176 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1215


>gi|73986614|ref|XP_867761.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 11
            [Canis familiaris]
          Length = 1602

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1066 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1125

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1126 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1179

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1180 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1219


>gi|50418184|gb|AAH77717.1| CHD1L protein [Homo sapiens]
          Length = 693

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 91  MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 142

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L  LQ              G    ++    I
Sbjct: 143 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 202

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 203 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 256

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 257 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|301060130|ref|ZP_07200997.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300445642|gb|EFK09540.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 691

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 21/158 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCT 100
           H  K   L  +++ +    ++V   F + L  + +   + +             DKD   
Sbjct: 479 HTSKTTRLLELLKVS-GEKVLVFSRFTATLEEIARRLSEEKVAYSLFHGGMGAADKDRA- 536

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +  G  P++       G G NLQ+    +V F L W+  + +Q I RI      + G
Sbjct: 537 VESFQNG-TPVMLCS-EIGGEGRNLQFCA-TMVNFDLPWNPMKIEQRIGRI-----HRIG 588

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R V VY L A NT +  +L+ L  +  + +L++  +
Sbjct: 589 QTRPVHVYNLCADNTAEHHILEVLDRRINLFELVIGEV 626


>gi|9802554|gb|AAF99756.1|AC003981_6 F22O13.8 [Arabidopsis thaliana]
          Length = 1471

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 36/183 (19%)

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KAFPQGR- 92
                  K+  L  I+  +       +V       L  ++             K + +G+ 
Sbjct: 1106 VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKD 1165

Query: 93   --------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       +    +  +NE     +        +   G+NL Y  N ++     W+ 
Sbjct: 1166 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNP 1224

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                Q I      R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++   ++
Sbjct: 1225 TYDLQAI-----FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD---RQ 1276

Query: 202  TIH 204
             +H
Sbjct: 1277 QVH 1279


>gi|332190192|gb|AEE28313.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1458

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 36/183 (19%)

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KAFPQGR- 92
                  K+  L  I+  +       +V       L  ++             K + +G+ 
Sbjct: 1089 VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKD 1148

Query: 93   --------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       +    +  +NE     +        +   G+NL Y  N ++     W+ 
Sbjct: 1149 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNP 1207

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                Q I      R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++   ++
Sbjct: 1208 TYDLQAI-----FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD---RQ 1259

Query: 202  TIH 204
             +H
Sbjct: 1260 QVH 1262


>gi|73986602|ref|XP_867703.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 5
            [Canis familiaris]
          Length = 1595

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1059 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1118

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1119 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1173 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|73986616|ref|XP_867769.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 12
            [Canis familiaris]
          Length = 1600

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1064 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1123

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1124 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1177

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1178 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1217


>gi|73986600|ref|XP_867692.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 4
            [Canis familiaris]
          Length = 1603

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1067 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1126

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1127 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1180

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1181 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1220


>gi|328769067|gb|EGF79112.1| hypothetical protein BATDEDRAFT_17244 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 988

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 41/223 (18%)

Query: 7   FQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYD--------EEKH 47
            QR  Y  L  ++I+A N A+             ++  +  N    +D            
Sbjct: 367 MQRMWYKRLLEKDIDAVNGAAGRKESKTRLQNIVMQLRKCCNHPYLFDGAEPGPPYTTDQ 426

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK 96
               +  K+  L+ +++  KA  + +++    +  L  L+              G T  +
Sbjct: 427 HLVDNSGKMALLDKLLQHLKAQGSRVLLFSQMSRVLDILEDYCIWKEFDYCRLDGTTAHE 486

Query: 97  DP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D   +I E+N+      +      + G G+NL    +I++ +   W+ +        +  
Sbjct: 487 DRINSIDEYNKPDSSKFIFLLTTRAGGLGINL-ATADIVIMYDNDWNPQV-------VTE 538

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+ V ++  I +N I+E V+ R   K  +  L++ 
Sbjct: 539 DRAHRIGQKKQVVIFRFITENAIEEKVIDRATQKLRLDQLVIQ 581


>gi|328709714|ref|XP_001947872.2| PREDICTED: ATP-dependent helicase brm-like [Acyrthosiphon pisum]
          Length = 1638

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 86   KAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G T  +D   + +++N    +  L      + G GLNLQ   + ++ F   W+  
Sbjct: 1174 YLRLDGTTKAEDRGDLLKKFNSAGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPH 1232

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q        R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1233 QDLQA-----QDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1282


>gi|237721132|ref|ZP_04551613.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449967|gb|EEO55758.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 578

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 21/202 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   + ++   L+     +     K++      NGAV    +   +     KIKA+  
Sbjct: 366 KEYKAAEADMVKYLKKYKNASDEQVQKSM------NGAVMVQMQLLKQISARGKIKAVCE 419

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLL 112
            +         +I+  +    +A L+K FP+  T+       Q+        N     L+
Sbjct: 420 FVHDVIDGGEKLILFGYLKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDCKLI 479

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             +  S G GL L    + + F    W   + +Q  +R       + G K  V  YY + 
Sbjct: 480 ILNFKSGGTGLTLT-AASRVAFIEFPWTFSDCEQAEDR-----AHRNGQKNNVNCYYFLG 533

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           ++TID+ +   ++TK  I + +
Sbjct: 534 KDTIDKYMYDVIQTKKNIANGV 555


>gi|327263495|ref|XP_003216555.1| PREDICTED: putative DNA repair and recombination protein RAD26-like
           [Anolis carolinensis]
          Length = 756

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  L++             G T  +D    
Sbjct: 496 SGKMKVLQKLLNHFRKNKDKVLLFSFSTKLLDVLEQYCMASGLDYRRLDGNTKAEDRVKI 555

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N   ++ +      + G GLN   G NI++ F   W+     Q I+R       + 
Sbjct: 556 VKEFNGMEEVNICLVSTMAGGLGLNF-VGANIVILFDPTWNPANDLQAIDR-----AYRI 609

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V+ LI+  T++E++  R   K  + 
Sbjct: 610 GQCRDVKVFRLISLGTVEEMMYLRQVYKQQLH 641


>gi|296807704|ref|XP_002844237.1| Fun30p [Arthroderma otae CBS 113480]
 gi|238843720|gb|EEQ33382.1| Fun30p [Arthroderma otae CBS 113480]
          Length = 1138

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
              K+  L  ++    AN   I++   F   +  L++             G T  +D  +I
Sbjct: 953  SGKVDKLCELLTNFIANGDRILIFSQFTMVMDILEQVLETQNIKFFRLDGTTSVEDRQSI 1012

Query: 102  -QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
               ++E   IP+      + G G+NL    N ++ F   ++ +E  Q        R  + 
Sbjct: 1013 LDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA-----ENRAHRV 1066

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1067 GQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1101


>gi|73949856|ref|XP_535304.2| PREDICTED: similar to chromodomain helicase DNA binding protein 9
            isoform 1 [Canis familiaris]
          Length = 2903

 Score = 84.6 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
            KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 1197 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 1257 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 1310

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            +N+ +  +  R   K  +   +L ++
Sbjct: 1311 RNSYEREMFDRASLKLGLDKAVLQSM 1336


>gi|308497953|ref|XP_003111163.1| CRE-TAG-192 protein [Caenorhabditis remanei]
 gi|308240711|gb|EFO84663.1| CRE-TAG-192 protein [Caenorhabditis remanei]
          Length = 2998

 Score = 84.2 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
               K+  +E ++ K   +   +++       L  L++                  D    
Sbjct: 1533 ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERIDGNVRGDLRQA 1592

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +        +      + G G+NL    + ++ F   W+ +   Q   R       
Sbjct: 1593 AIDRFSKENSDRFVFLLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----H 1646

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKET 202
            + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E 
Sbjct: 1647 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEG 1694


>gi|293372914|ref|ZP_06619283.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|298480929|ref|ZP_06999124.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
 gi|292631982|gb|EFF50591.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|298272952|gb|EFI14518.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
          Length = 578

 Score = 84.2 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 21/202 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   + ++   L+     +     K++      NGAV    +   +     KIKA+  
Sbjct: 366 KEYKAAEADMVKYLKKYKNASDEQVQKSM------NGAVMVQMQLLKQISARGKIKAVCE 419

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLL 112
            +         +I+  +    +A L+K FP+  T+       Q+        N     L+
Sbjct: 420 FVHDVIDGGEKLILFGYLKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDCKLI 479

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             +  S G GL L    + + F    W   + +Q  +R       + G K  V  YY + 
Sbjct: 480 ILNFKSGGTGLTLT-AASRVAFIEFPWTFSDCEQAEDR-----AHRNGQKNNVNCYYFLG 533

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           ++TID+ +   ++TK  I + +
Sbjct: 534 KDTIDKYMYDVIQTKKNIANGV 555


>gi|212543509|ref|XP_002151909.1| DNA excision repair protein (Rad26L), putative [Penicillium
           marneffei ATCC 18224]
 gi|210066816|gb|EEA20909.1| DNA excision repair protein (Rad26L), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1059

 Score = 84.2 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     + E+N + +  +   
Sbjct: 640 ANGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGAMSYEDRAKVVDEFNSDPQQFVFLI 699

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 700 STRAGGVGLNI-VSANKVVVVDPNWNPSHDLQA-----QDRAYRIGQHRDVEVFRLISAG 753

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 754 TIEEIVYARQIYKQQQAN 771


>gi|33440456|gb|AAH56199.1| Smarca2 protein [Mus musculus]
          Length = 985

 Score = 84.2 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 461 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 520

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 521 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 574

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 575 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 614


>gi|195430908|ref|XP_002063490.1| GK21938 [Drosophila willistoni]
 gi|194159575|gb|EDW74476.1| GK21938 [Drosophila willistoni]
          Length = 1564

 Score = 84.2 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 77/223 (34%), Gaps = 38/223 (17%)

Query: 5    HKFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIK 57
             + + +        +   NIEA   A +  +  + + G    D  K++      +  K++
Sbjct: 834  KQMETDFAASKIKQMNSINIEAAKKALRAKRNDEFSCGWA-VDLMKNYVSDQISNSPKME 892

Query: 58   ALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------------QGRTL- 94
                I++++      I++       L  ++                         G T  
Sbjct: 893  IFFTIMKESMLLGDRILLFSQSLLTLNSIEGFLKASYVPGSHELWTRNISYFRLDGSTSS 952

Query: 95   DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    + E+N    + L      +   G+NL  G N ++ F   W+     Q + RI  
Sbjct: 953  QERERLVNEFNSNSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI-- 1009

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  +  +VY ++    +++ +  R   K  + D +++
Sbjct: 1010 ---YRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 1049


>gi|239615480|gb|EEQ92467.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1091

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT----- 93
            Y       K +    +  +E   +  +  PI  +V   + S L  ++ A           
Sbjct: 906  YEGPHTKTKALISHLLDTVEESKKAPDEPPIKSVVFSSWTSHLDLIEIALEDNGITTFTR 965

Query: 94   ------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +    + E+ +   I +L A   + G GLNL  G  + +     ++     Q
Sbjct: 966  LDGTMSLKQRNAALDEFRDNNDITVLLATLGAGGVGLNLTSGSRVYIM-EPQYNPAAIAQ 1024

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R+      + G  R V     I +++I+E + +  + K  + D+ LN
Sbjct: 1025 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELAKKKQQMADMSLN 1069


>gi|84996109|ref|XP_952776.1| DEAD-box family (SNF2-like) helicase [Theileria annulata strain
            Ankara]
 gi|65303773|emb|CAI76150.1| DEAD-box family (SNF2-like) helicase, putative [Theileria annulata]
          Length = 1165

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 32/188 (17%)

Query: 1    MKQY-HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            +K Y +K  ++LY +           ++K  K L+L +  +   E+          +  +
Sbjct: 999  LKNYINKINKKLYLE-----------STKIRKMLELISNIIKKKEKILIFSQFTNYLDII 1047

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            E I++  N  PI+                    TL +    I+++N   + +L       
Sbjct: 1048 EYIMKLENMKPIL--------------RLDGTVTLIEREKIIKKFNNEDVYILLISIKVG 1093

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    N ++     W+     Q  +R       + G ++ V VY L  +NTI+E 
Sbjct: 1094 NVGLNLSI-ANHVILMDQSWNPYNDIQAEDRC-----HRIGQQKIVHVYKLFVKNTIEEY 1147

Query: 180  VLQRLRTK 187
            ++ +   K
Sbjct: 1148 IINQSYNK 1155


>gi|297843648|ref|XP_002889705.1| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]
 gi|297335547|gb|EFH65964.1| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]
          Length = 1483

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 36/183 (19%)

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KAFPQGR- 92
                  K+  L  I+  +       +V       L  ++             K + +G+ 
Sbjct: 1118 VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKD 1177

Query: 93   --------TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       +    +  +NE     +        +   G+NL Y  N ++     W+ 
Sbjct: 1178 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNP 1236

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                Q I      R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++   ++
Sbjct: 1237 TYDLQAI-----FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD---RQ 1288

Query: 202  TIH 204
             +H
Sbjct: 1289 QVH 1291


>gi|242021061|ref|XP_002430965.1| hypothetical protein Phum_PHUM506220 [Pediculus humanus corporis]
 gi|212516185|gb|EEB18227.1| hypothetical protein Phum_PHUM506220 [Pediculus humanus corporis]
          Length = 687

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ L      + G G+NL  G N  + F + W+     Q I RI      + G  +   V
Sbjct: 483 RLRLFLISTKAGGIGINLT-GANRAILFDVSWNPSHDTQSIFRI-----YRIGQNKPCHV 536

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Y  +A  T++E + +R   K +I   +++ L
Sbjct: 537 YRFVASGTMEEKIYERQIMKQSISYRVVDEL 567


>gi|255943149|ref|XP_002562343.1| Pc18g05160 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587076|emb|CAP94740.1| Pc18g05160 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1022

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG-KIPLLFA 114
           +N   +++  H    L  LQ  F              +L      + E+N   +  +   
Sbjct: 616 SNGDKVLIFSHSVRLLKMLQMLFHHTSYNVSYLDGSMSLQDRAKAVDEFNADSRQFVFLI 675

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 676 STKAGGVGLNIT-SANKVVVVDPNWNPSYDLQA-----QDRAYRIGQLRDVEVFRLISAG 729

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 730 TIEEIVYARQIYKQQQAN 747


>gi|73986632|ref|XP_867832.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 20
            [Canis familiaris]
          Length = 1589

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1053 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1112

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1113 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1166

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1167 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|38566825|emb|CAE76132.1| related to helicase-DNA-binding protein [Neurospora crassa]
          Length = 1678

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
               K+  LEV++ K       +++   F   L  L+          +     ++  +   
Sbjct: 1051 ASSKLLLLEVMLPKLRERGHRVLIFSQFLDQLTILEDFLAGMDLPYQRLDGSQSSMEKQK 1110

Query: 100  TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N     L        + G G+NL    + ++     W+  +  Q + R       
Sbjct: 1111 RIDAFNAPDSQLFCMLLSTRAGGVGINL-ATADTVIILDPDWNPHQDIQALSR-----AH 1164

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G ++ V  + L+  ++ +E +LQ  R K  +  LL+  +
Sbjct: 1165 RIGQQKKVLCFQLMTVDSAEEKILQIGRKKMALDHLLIETM 1205


>gi|170096925|ref|XP_001879682.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164645085|gb|EDR09333.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 984

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
              K+ AL   +++  +     I    + S L  ++  F +                +D 
Sbjct: 792 PSTKMLALIDYLKEWESTGDKTICYSQWTSMLDLIETLFSRHGIRSLRFDGKMDRTSRDA 851

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                   G   ++         GLNL    N +V   L W+     Q  +R       +
Sbjct: 852 TLASFKQIGGPKVILISTKCGSVGLNL-VSANRIVNMDLSWNYAAESQAYDRC-----HR 905

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G ++ V V  L+ +NTI+E +L+    K  + +  L
Sbjct: 906 IGQEKTVHVKRLVVENTIEERMLKLQDVKVGLAEAAL 942


>gi|326382680|ref|ZP_08204371.1| ATP-dependent DNA helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198799|gb|EGD55982.1| ATP-dependent DNA helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 571

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 43/222 (19%)

Query: 6   KFQRELYCDLQGENI--------EAFNS------------ASKTVKCLQLANGAVYYDEE 45
           K   ++ CDL  E          +A N+             +   +  Q+ N       E
Sbjct: 324 KLHTDVECDLTDEQARIYDAILDDAENAGFGTGMARRGAILTALTRLKQVCNHPGLTGSE 383

Query: 46  KHWKEV---HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                       K+     I+E    N +P +V   +      L     Q          
Sbjct: 384 AVTAGDLSGRSGKLDVCTDIVESNLENDSPTVVFTQYRQTGELLAAHLGQVLGTDVPFLH 443

Query: 91  -GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G +  +    + ++  G    +L A   + G GL L    + +V +  WW+     Q  
Sbjct: 444 GGLSRAERDRIVDDYQAGAGCGVLIASLKAAGTGLTLTRAAD-VVHYDRWWNPAVEAQAT 502

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +R+      + G  R V V  L    T++E +      KS +
Sbjct: 503 DRV-----HRIGQDRIVTVTTLTTAGTLEEHIAAMHDRKSAL 539


>gi|242786879|ref|XP_002480891.1| DNA excision repair protein (Rad26L), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721038|gb|EED20457.1| DNA excision repair protein (Rad26L), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1052

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           AN   ++V  H    L  LQ  F              + +     + E+N + +  +   
Sbjct: 638 ANGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGAMSYEDRAKAVDEFNSDPQQFVFLI 697

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 698 STRAGGVGLNI-VSANKVVVVDPNWNPSHDLQA-----QDRAYRIGQHRDVEVFRLISAG 751

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 752 TIEEIVYARQIYKQQQAN 769


>gi|115643723|ref|XP_001199493.1| PREDICTED: similar to Smarca4 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115665532|ref|XP_001186937.1| PREDICTED: similar to Smarca4 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 642

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
           K + L+ I+ K       I++     + +  L+  F                D     +Q
Sbjct: 54  KFELLDRILPKLKALGHRILLFCQMTTLMTILEDFFVYRGFKYLRLDGTTKADDRGILLQ 113

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +NE   P  +      + G GLNLQ   + ++ F   W+  +  Q        R  + G
Sbjct: 114 TFNEANCPYFIFMLSTRAGGLGLNLQT-ADTVILFDSDWNPHQDLQA-----QDRAHRIG 167

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V V  L+   +++E +L   R K  +   ++ A
Sbjct: 168 QVNEVRVLRLMTVQSVEEKILAAARWKMNMDSKIIQA 204


>gi|296195978|ref|XP_002745629.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1 isoform 1 [Callithrix jacchus]
 gi|296195980|ref|XP_002745630.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1 isoform 2 [Callithrix jacchus]
          Length = 1027

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 852  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 911

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 912  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 965

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 966  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|261205042|ref|XP_002627258.1| SNF2 family protein [Ajellomyces dermatitidis SLH14081]
 gi|239592317|gb|EEQ74898.1| SNF2 family protein [Ajellomyces dermatitidis SLH14081]
          Length = 945

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTL 94
           K+ + +H  K+  L  ++ +   N    +V   F          L  LQ  F    G T 
Sbjct: 732 KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 791

Query: 95  DKDPC-TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D   T+  ++E   IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 792 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQEDVQA----- 845

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 846 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 887


>gi|241959098|ref|XP_002422268.1| probable ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223645613|emb|CAX40272.1| probable ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1096

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 23/165 (13%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQG 91
            Y D  K  +       K L+ II       +++   F   L  L++         A   G
Sbjct: 935  YLDSGKVIELG-----KILQQIIN-NKGEKVLIFSLFTQVLDILERVLSIFNYKFARLDG 988

Query: 92   RTLDKDPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  ++    I  +N    I +      + G G+NL    N ++ F   ++  E +Q  +
Sbjct: 989  NTPVQERQDLIDLFNHDDNIHIFLISTKAGGVGINL-VAANHVIMFDQSFNPHEDKQAED 1047

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R       + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 1048 R-----AHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 1087


>gi|238499559|ref|XP_002381014.1| DNA excision repair protein (Rad26L), putative [Aspergillus flavus
           NRRL3357]
 gi|220692767|gb|EED49113.1| DNA excision repair protein (Rad26L), putative [Aspergillus flavus
           NRRL3357]
          Length = 882

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +N   ++V  H    L  LQ  F              + +     + E+N + +  +   
Sbjct: 628 SNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMSYEDRATAVDEFNSDPRQFVFLI 687

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 688 STRAGGVGLNIT-SANKVVVVDPNWNPSYDLQA-----QDRAYRIGQVRDVEVFRLISAG 741

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 742 TIEEIVYARQIYKQQQAN 759


>gi|195119131|ref|XP_002004085.1| GI19521 [Drosophila mojavensis]
 gi|193914660|gb|EDW13527.1| GI19521 [Drosophila mojavensis]
          Length = 1865

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           D  RL    P+    +     I+ +N     +  +      + G G+NL  G N ++   
Sbjct: 276 DYYRLDGKTPK----NIRHEMIKRFNSEANRRARVFLISAKAGGQGINLT-GANRVIILD 330

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+    QQ I RI      + G K+  ++Y LIA  T++E V  R  TK  +   +++
Sbjct: 331 TSWNPSNDQQNIFRIF-----RLGQKKNCYIYRLIAMGTMEEKVYSRSVTKQAMSFRVVD 385


>gi|329664188|ref|NP_001192361.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 [Bos
            taurus]
 gi|297475700|ref|XP_002688182.1| PREDICTED: KIAA1122 protein-like [Bos taurus]
 gi|296486709|gb|DAA28822.1| KIAA1122 protein-like [Bos taurus]
          Length = 1029

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 854  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 913

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 914  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 967

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI Q TI+E +L+  + K  ++  +
Sbjct: 968  RVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDM 1004


>gi|125550862|gb|EAY96571.1| hypothetical protein OsI_18476 [Oryza sativa Indica Group]
          Length = 1157

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   +   
Sbjct: 522 EMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 581

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 582 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGNTGGEDRD 641

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 642 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 695

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 696 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 735


>gi|190358532|ref|NP_001121901.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform a
            [Homo sapiens]
 gi|190358536|ref|NP_001121902.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform a
            [Homo sapiens]
 gi|119626456|gb|EAX06051.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1, isoform
            CRA_c [Homo sapiens]
 gi|168278811|dbj|BAG11285.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 [synthetic
            construct]
          Length = 1028

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 853  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 913  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 966

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 967  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|326934975|ref|XP_003213557.1| PREDICTED: probable global transcription activator SNF2L2-like,
           partial [Meleagris gallopavo]
          Length = 232

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 22  ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 81

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 82  LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 135

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 136 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 175


>gi|189190492|ref|XP_001931585.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973191|gb|EDU40690.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1030

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            IV   F S L  ++    +            T  +   +I  +     + +      + G
Sbjct: 880  IVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAQRQKSIDHFMTNPDVEVFLVSLKAGG 939

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
              LNL     + +    WW+     Q  +R       + G +R   +  L  +++++  +
Sbjct: 940  VALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCVEDSVESRM 993

Query: 181  LQRLRTKSTI 190
            +     K+ +
Sbjct: 994  VALQEKKAAM 1003


>gi|297293034|ref|XP_002804185.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like isoform 1 [Macaca mulatta]
 gi|297293036|ref|XP_002804186.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like isoform 2 [Macaca mulatta]
          Length = 1028

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 853  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 913  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 966

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 967  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|261199416|ref|XP_002626109.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594317|gb|EEQ76898.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1090

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT----- 93
            Y       K +    +  +E   +  +  PI  +V   + S L  ++ A           
Sbjct: 905  YEGPHTKTKALISHLLDTVEESKKAPDEPPIKSVVFSSWTSHLDLIEIALEDNGITTFTR 964

Query: 94   ------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +    + E+ +   I +L A   + G GLNL  G  + +     ++     Q
Sbjct: 965  LDGTMSLKQRNAALDEFRDNNDITVLLATLGAGGVGLNLTSGSRVYIM-EPQYNPAAIAQ 1023

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R+      + G  R V     I +++I+E + +  + K  + D+ LN
Sbjct: 1024 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELAKKKQQMADMSLN 1068


>gi|190358534|ref|NP_064544.2| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform b
            [Homo sapiens]
 gi|306526240|sp|Q9H4L7|SMRCD_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1; AltName: Full=ATP-dependent helicase 1; Short=hHEL1
 gi|119626455|gb|EAX06050.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1, isoform
            CRA_b [Homo sapiens]
          Length = 1026

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 851  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 910

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 911  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 964

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 965  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1001


>gi|300176297|emb|CBK23608.2| unnamed protein product [Blastocystis hominis]
          Length = 943

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 25/176 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
             QL+  A+Y    K    V    ++        ++    +IV   +   L  L + F +
Sbjct: 474 LRQLSEEALYAYGNKLSVVVPLVARL--------RSEGNRVIVFARYLKMLLILDECFQR 525

Query: 91  GRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        L++    +  + +    +L     + G G+ +    + +V     W+
Sbjct: 526 RGIRTIHYNGMLGLEQRAAALAAFKQSGSGVLLITVGAGGEGITVTE-ADRIVLLDPNWN 584

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +Q I+R       + G  + V VY  +   TI+E +  R   K  +   ++ 
Sbjct: 585 PTVDEQAIDR-----AYRIGQTKNVIVYRCVTCGTIEEKMYARQVWKQCLNKKVIE 635


>gi|297707107|ref|XP_002830358.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Pongo
           abelii]
          Length = 2499

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 775 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 834

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 835 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 888

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 889 NSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|114595202|ref|XP_517348.2| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform 3 [Pan troglodytes]
 gi|114595204|ref|XP_001163670.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform 2 [Pan troglodytes]
 gi|10944338|gb|AAG16639.1| helicase SMARCAD1 [Homo sapiens]
          Length = 1026

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 851  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 910

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 911  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 964

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 965  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1001


>gi|301758964|ref|XP_002915331.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Ailuropoda melanoleuca]
          Length = 1027

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 852  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 911

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 912  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 965

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 966  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|73986634|ref|XP_867838.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 21
            [Canis familiaris]
          Length = 1605

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1069 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1128

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1129 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1182

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1222


>gi|73986630|ref|XP_867824.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 19
            [Canis familiaris]
          Length = 1596

 Score = 84.2 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1060 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1119

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1120 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1173

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1174 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1213


>gi|168702299|ref|ZP_02734576.1| helicase, Snf2 family protein [Gemmata obscuriglobus UQM 2246]
          Length = 763

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            Q+    DL  + I      +  V    + +    YD++       DE  + +  ++   
Sbjct: 464 LQKNYLTDLDRKRI-----LASLVNLRTICDSLFLYDKQTRVSPKLDEFAELVPELVS-- 516

Query: 67  NAAPIIVAYHFNSD-------LARLQ--KAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
               ++V   + +        L RL        G    K+   + + +       +F   
Sbjct: 517 -DHKLVVFSQWETMAMEAAKVLDRLGVGYVLLHGGLPGKERKAVLERFQADAACKVFLST 575

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNLQ   + +V   L W+    +Q I R+      + G  R V V   + + TI
Sbjct: 576 DAGGTGLNLQM-ADTVVNLELPWNPAVLEQRIARV-----HRMGQNRPVRVINFVTRGTI 629

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E VL+ + +K  +   L   
Sbjct: 630 EERVLRTVESKQALFAGLFAG 650


>gi|149238518|ref|XP_001525135.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450628|gb|EDK44884.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 421

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 51  VHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
           +   KIK LE I++         +++   F   L  L++              G  +++ 
Sbjct: 236 LDSGKIKTLESILKTIIVERREKVLIFSLFTQMLDILEQVLSVFKYKFVRLDGGTRVEER 295

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI  +  +  IP+      + G G+NL    N ++ +   ++  + +Q  +R      
Sbjct: 296 QETIDLFYQDDSIPVFLLSTKAGGFGINL-VAANNVISYDQSFNPHDDKQAEDR-----A 349

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V VY L++  TI+  ++   + K  +   + +
Sbjct: 350 HRVGQKKEVTVYKLVSDKTIEINMMMLAQNKLQLDASMSD 389


>gi|119603201|gb|EAW82795.1| chromodomain helicase DNA binding protein 9, isoform CRA_c [Homo
           sapiens]
          Length = 2349

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 663 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 722

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 723 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 776

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 777 RNSYEREMFDRASLKLGLDKAVLQSM 802


>gi|148807359|gb|ABR13433.1| putative DNA helicase [Pseudomonas aeruginosa]
          Length = 657

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 493 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGLGCVTLVGNDSLTKRQKAIDR 552

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 553 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 606

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 607 RMVVVKIPLVEGTIDEQLWQLLNAKRQVAQDLIE 640


>gi|312599275|gb|ADQ91298.1| hypothetical protein BpV2_131 [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 478

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------AFPQGRTLDKDPCTIQ 102
           E   +K++ L  +I +      +V   F  ++  + +             + +     ++
Sbjct: 296 EGRSKKMETLFKLISEHPDEKTLVFCQFKQEMDYIHENLSCPVFRIDGSVSKEDREKQLK 355

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE  +  +L     + G GLN+Q   + + F +  W+     Q I R       ++G 
Sbjct: 356 LFNEAPQNSVLLIQVKAGGQGLNIQC-ASRIYFTAPCWNPATELQAIGR-----AHRSGQ 409

Query: 162 KRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLL--NALKKET 202
           KR V+V  L+  +T     +++ ++     KS +   +L  + LK + 
Sbjct: 410 KRTVYVKKLVYGDTPGYPSVEQAMIALQGHKSLLSAEVLRDDRLKTQI 457


>gi|73986626|ref|XP_867807.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 17
            [Canis familiaris]
          Length = 1579

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1043 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1102

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1103 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1156

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1157 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1196


>gi|327355140|gb|EGE83997.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1091

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT----- 93
            Y       K +    +  +E   +  +  PI  +V   + S L  ++ A           
Sbjct: 906  YEGPHTKTKALISHLLDTVEESKKAPDEPPIKSVVFSSWTSHLDLIEIALEDNGITTFTR 965

Query: 94   ------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +    + E+ +   I +L A   + G GLNL  G  + +     ++     Q
Sbjct: 966  LDGTMSLKQRNAALDEFRDNNDITVLLATLGAGGVGLNLTSGSRVYIM-EPQYNPAAIAQ 1024

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R+      + G  R V     I +++I+E + +  + K  + D+ LN
Sbjct: 1025 AVDRV-----HRLGQTREVTTIQFIMKDSIEEKIAELAKKKQQMADMSLN 1069


>gi|296810938|ref|XP_002845807.1| CHR9/SNF2/SWI2 [Arthroderma otae CBS 113480]
 gi|238843195|gb|EEQ32857.1| CHR9/SNF2/SWI2 [Arthroderma otae CBS 113480]
          Length = 1011

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 17/137 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
           N   +++  H    L  LQ  F              + ++    +  +N + +  +    
Sbjct: 624 NGDKVLIFSHNVRLLKMLQMLFNHTSYNVSYLDGAMSYEERANVVNSFNSDPRQFVFLIS 683

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  T
Sbjct: 684 TKAGGVGLNIT-SANKVVVVDPNWNPSYDLQA-----QDRAYRIGQLRDVEVFRLVSAGT 737

Query: 176 IDELVLQRLRTKSTIQD 192
           I+E+V  R   K    +
Sbjct: 738 IEEIVYARQIYKQQQAN 754


>gi|325179496|emb|CCA13893.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1697

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 52   HDEKIKALEVIIEKANA------------------APIIVAYHFNSDLARLQKAFPQ--- 90
            H  K  AL  ++  A                       ++  H    L  ++  F +   
Sbjct: 1454 HSGKFTALRDLLHDACGFSSDDNDQDETEPSLSPTHRCLIFSHLQETLDYVEHMFEECFP 1513

Query: 91   ----GRTLDKDPCTI-----QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                 R       ++     + +NE   I +L    +  G GL L  G + ++F    W+
Sbjct: 1514 RLTYTRLRSTLTNSVFHEKCRNFNEDPSIDILLLTTSIGGLGLTLT-GADTVIFLEHSWN 1572

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 Q ++R       + G  ++V V+ LI QNT++E +L     K  +   ++
Sbjct: 1573 PFVDLQAMDR-----AHRLGQTKSVRVFRLIMQNTLEEEILNLQSFKQQVASSVI 1622


>gi|302913263|ref|XP_003050881.1| SNF2 superfamily RAD26-like protein [Nectria haematococca mpVI
           77-13-4]
 gi|256731819|gb|EEU45168.1| SNF2 superfamily RAD26-like protein [Nectria haematococca mpVI
           77-13-4]
          Length = 1020

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP-LLFA 114
           +N   ++V  H    L  LQ  F              + ++    +  +N      +   
Sbjct: 563 SNGDKVLVFSHSVRLLRILQHLFTNTSYTVSYLDGSLSYEQRQEVVDTFNSDPTQFVFLI 622

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 623 STKAGGVGLNIT-SANKVVIIDPHWNPSYDLQA-----QDRAYRIGQTRDVEVFRLISLG 676

Query: 175 TIDELVLQRLRTKSTIQD 192
           T++E+V  R   K    +
Sbjct: 677 TVEEIVYARQIYKQQQAN 694


>gi|148667386|gb|EDK99802.1| mCG144495 [Mus musculus]
          Length = 680

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 452 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 511

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 512 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 565

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 566 SVEERITQVAKKKMML 581


>gi|115462129|ref|NP_001054664.1| Os05g0150300 [Oryza sativa Japonica Group]
 gi|54291826|gb|AAV32194.1| putative ATPase [Oryza sativa Japonica Group]
 gi|113578215|dbj|BAF16578.1| Os05g0150300 [Oryza sativa Japonica Group]
 gi|222630218|gb|EEE62350.1| hypothetical protein OsJ_17139 [Oryza sativa Japonica Group]
          Length = 1158

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   +   
Sbjct: 523 EMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 582

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 583 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGNTGGEDRD 642

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 643 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 696

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 697 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 736


>gi|302802510|ref|XP_002983009.1| hypothetical protein SELMODRAFT_117536 [Selaginella moellendorffii]
 gi|300149162|gb|EFJ15818.1| hypothetical protein SELMODRAFT_117536 [Selaginella moellendorffii]
          Length = 975

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           K Q+  Y  L  ++++A N+  +  + L +A                  G  Y   E   
Sbjct: 348 KMQKHYYGSLLQKDLDAINTGGERRRLLNIAMQLKKCCNHPYLFQGAEPGPPYLSGEHLV 407

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDP 98
           +      +    +   K   + +++       L  L         Q     G+T  ++  
Sbjct: 408 ENSGKMVLLDKLLPKLKQRDSRVLIFSQMTRLLDILEDYCIYRTYQYCRIDGKTSGEERE 467

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N+   +  L      + G G+NL    +I++ +   W+ +   Q        R 
Sbjct: 468 AAIESFNKEGSEKFLFLLSTRAGGLGINL-ATADIVILYDSDWNPQADLQA-----QDRA 521

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 522 HRIGQKKEVQVFRFCTELTIEEKVIERAYKKLALDALVIQ 561


>gi|115930771|ref|XP_001182799.1| PREDICTED: similar to MGC108253 protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1302

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCTIQEWNE 106
            K L  + E+   + +++   F   L  +Q+             G+T + +    I ++N+
Sbjct: 1151 KMLADLKEQ--GSRVLLFSQFVMVLDIVQEYLKIRGHKFVRMDGQTPVAERAQLIDKFNK 1208

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               + +      + G G+NL    N ++   + ++    +Q  +R       + G  R V
Sbjct: 1209 NDSVFIFMLSTRAGGVGINLT-AANTVILHDIDFNPYNDKQAEDRC-----HRVGQTREV 1262

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V  L+++ TI+E +L   + K  ++  + + +  E
Sbjct: 1263 SVIRLVSKQTIEEGMLSCAKYKLKLEKQMTSGISGE 1298


>gi|74001934|ref|XP_535658.2| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 1 [Canis familiaris]
 gi|74001936|ref|XP_861412.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 2 [Canis familiaris]
          Length = 1025

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 850  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 909

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 910  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 963

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 964  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1000


>gi|330918867|ref|XP_003298372.1| hypothetical protein PTT_09092 [Pyrenophora teres f. teres 0-1]
 gi|311328410|gb|EFQ93512.1| hypothetical protein PTT_09092 [Pyrenophora teres f. teres 0-1]
          Length = 1029

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            IV   F S L  ++    +            T  +   +I  +     + +      + G
Sbjct: 879  IVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAQRQKSIDHFMTNPDVEVFLVSLKAGG 938

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
              LNL     + +    WW+     Q  +R       + G +R   +  L  +++++  +
Sbjct: 939  VALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCVEDSVESRM 992

Query: 181  LQRLRTKSTI 190
            +     K+ +
Sbjct: 993  VALQEKKAAM 1002


>gi|254568884|ref|XP_002491552.1| Protein involved in transcription-coupled repair nucleotide
           excision repair of UV-induced DNA lesion [Pichia
           pastoris GS115]
 gi|238031349|emb|CAY69272.1| Protein involved in transcription-coupled repair nucleotide
           excision repair of UV-induced DNA lesion [Pichia
           pastoris GS115]
 gi|328351939|emb|CCA38338.1| DNA excision repair protein ERCC-6 [Pichia pastoris CBS 7435]
          Length = 1088

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW------ 104
             K++ ++ ++E  K+     ++       L  L+    +      +      +      
Sbjct: 651 SGKMQVVKKLLELWKSQGHKTLLFTQTRQMLDILESFLERLNAKGAEEEDFVPFKFLRMD 710

Query: 105 ----------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                           N+    +        G G+NL  G N ++ +   W+     Q  
Sbjct: 711 GTTSIGVRQSLVDVFNNDPSYNVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPSTDVQAR 769

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ER       + G K+ V +Y L+   +I+E +  R   K  + + +L   K+ 
Sbjct: 770 ERAW-----RLGQKKDVTIYRLMIAGSIEEKIYHRQIFKQFLTNKILKDPKQR 817


>gi|221043716|dbj|BAH13535.1| unnamed protein product [Homo sapiens]
          Length = 596

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 421 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 480

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 481 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 534

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 535 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 571


>gi|325179497|emb|CCA13894.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1696

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 52   HDEKIKALEVIIEKANA------------------APIIVAYHFNSDLARLQKAFPQ--- 90
            H  K  AL  ++  A                       ++  H    L  ++  F +   
Sbjct: 1453 HSGKFTALRDLLHDACGFSSDDNDQDETEPSLSPTHRCLIFSHLQETLDYVEHMFEECFP 1512

Query: 91   ----GRTLDKDPCTI-----QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                 R       ++     + +NE   I +L    +  G GL L  G + ++F    W+
Sbjct: 1513 RLTYTRLRSTLTNSVFHEKCRNFNEDPSIDILLLTTSIGGLGLTLT-GADTVIFLEHSWN 1571

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 Q ++R       + G  ++V V+ LI QNT++E +L     K  +   ++
Sbjct: 1572 PFVDLQAMDR-----AHRLGQTKSVRVFRLIMQNTLEEEILNLQSFKQQVASSVI 1621


>gi|300708940|ref|XP_002996640.1| hypothetical protein NCER_100233 [Nosema ceranae BRL01]
 gi|239605957|gb|EEQ82969.1| hypothetical protein NCER_100233 [Nosema ceranae BRL01]
          Length = 1262

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 19/170 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARL----------QKAFPQ 90
            DE          K+  L+ ++ K      +++       L  L           +    
Sbjct: 657 IDEYYKILIQSSGKLVLLDKLLNKLYGHHKVLIFSQMTKCLDLLGEYLAYKKYKFERIDG 716

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G   D     I  +++      +      + G G+NL    + ++ F   W+ +   Q  
Sbjct: 717 GVRGDHRQAAIDRFSDANSDGFVFLLCTRAGGVGINLT-AADTVIIFDSDWNPQNDLQAQ 775

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R       + G    V +Y L+ +NT +  +  +   K  +   +L  +
Sbjct: 776 ARC-----HRIGQTNEVKIYRLVTRNTYEREMFDKAGMKLGLDRAVLQKM 820


>gi|118781463|ref|XP_311484.3| AGAP010462-PA [Anopheles gambiae str. PEST]
 gi|116129961|gb|EAA07201.4| AGAP010462-PA [Anopheles gambiae str. PEST]
          Length = 1529

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K  A    +++       +  ++              G T  ++   
Sbjct: 1095 ASGKFELLDRILPKLKATGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLDGTTKSEERGD 1154

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N       L      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1155 LLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAH 1208

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1209 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1248


>gi|91807128|ref|NP_075996.2| RAD26L hypothetical protein isoform 2 [Mus musculus]
 gi|172046593|sp|Q9JIM3|RAD26_MOUSE RecName: Full=Putative DNA repair and recombination protein
           RAD26-like
          Length = 699

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 505 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 564

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 565 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 619 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 650


>gi|8163804|gb|AAF73858.1|AF217319_1 putative repair and recombination helicase RAD26L [Mus musculus]
          Length = 685

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 491 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 550

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 551 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 604

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 605 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 636


>gi|313231397|emb|CBY08512.1| unnamed protein product [Oikopleura dioica]
          Length = 1201

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 14/148 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEG---K 108
           +E +     ++++   +P        + D  R+  A   G    K    I  +N+    +
Sbjct: 749 EEFLDQCTALVDQGLPSPAGSGKWIKNEDYFRMDGATSGG----KRHEFIGAFNDPLNMR 804

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L      +   G+NL      +V F   W+     Q I R+      + G  + VF+Y
Sbjct: 805 SRLFIISTKAGCLGVNL-VAATRVVIFDASWNPTHDIQSIFRV-----YRIGQTKPVFIY 858

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+AQ T++E V +R   K  +   +L+
Sbjct: 859 RLVAQGTMEEKVYRRQVQKQGLAQRVLD 886


>gi|4056413|gb|AAC97987.1| SN24_HUMAN [Homo sapiens]
          Length = 661

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 265 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 324

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 325 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 378

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 379 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 418


>gi|313844117|ref|YP_004061780.1| hypothetical protein OlV1_147c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599502|gb|ADQ91524.1| hypothetical protein OlV1_147c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 480

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWN----- 105
             K++ L  +I+       +V   F  ++  +Q+    P  R     P   ++       
Sbjct: 302 SNKMETLFRMIKAHPDEKTLVFCQFRGEMDYIQQNMECPTFRIDGSVPKDERDNQVIAFK 361

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      S G GLNLQ    + +     W+     Q + R       + G  + 
Sbjct: 362 KAPPGAVFIIQIKSGGQGLNLQEATRVYI-TGPSWNPATELQAVGR-----SHRTGQTKQ 415

Query: 165 VFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLLNALKKE 201
           V+V  LI + T     ++E ++     KS +   +LN  + E
Sbjct: 416 VYVKKLIYKETDTFVSVEEEMMALQGHKSIVCSKVLNDERIE 457


>gi|194743128|ref|XP_001954052.1| GF18082 [Drosophila ananassae]
 gi|190627089|gb|EDV42613.1| GF18082 [Drosophila ananassae]
          Length = 1314

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 35/206 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            +    + +  N+         ++ LQ    A+          V  + +++L  +IE    
Sbjct: 881  KPFVEERELNNVHHSPKLVILLRLLQ-QCEAI-----GDKLLVFSQSLQSL-DVIEHFLS 933

Query: 65   --KANAAPIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIP 110
               +N       Y F  D+   +  +  G+           ++     +++N     +  
Sbjct: 934  LVDSNTKN----YEFEGDVGDFKGCWTIGKDYFRLDGSCSVEQREAMCKQFNNLTNLRAR 989

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N +V F + W+     Q I R+      + G  +  ++Y L
Sbjct: 990  LFLISTRAGGLGINLT-AANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRL 1043

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            IA  T+++ V +R   K      +++
Sbjct: 1044 IAMGTMEQKVYERQVAKQATAKRVID 1069


>gi|302764218|ref|XP_002965530.1| hypothetical protein SELMODRAFT_84809 [Selaginella moellendorffii]
 gi|300166344|gb|EFJ32950.1| hypothetical protein SELMODRAFT_84809 [Selaginella moellendorffii]
          Length = 971

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           K Q+  Y  L  ++++A N+  +  + L +A                  G  Y   E   
Sbjct: 348 KMQKHYYGSLLQKDLDAINTGGERRRLLNIAMQLKKCCNHPYLFQGAEPGPPYLSGEHLV 407

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDP 98
           +      +    +   K   + +++       L  L         Q     G+T  ++  
Sbjct: 408 ENSGKMVLLDKLLPKLKQRDSRVLIFSQMTRLLDILEDYCIYRTYQYCRIDGKTSGEERE 467

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N+   +  L      + G G+NL    +I++ +   W+ +   Q        R 
Sbjct: 468 AAIESFNKEGSEKFLFLLSTRAGGLGINL-ATADIVILYDSDWNPQADLQA-----QDRA 521

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 522 HRIGQKKEVQVFRFCTELTIEEKVIERAYKKLALDALVIQ 561


>gi|281348912|gb|EFB24496.1| hypothetical protein PANDA_003305 [Ailuropoda melanoleuca]
          Length = 1009

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 853  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 913  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 966

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 967  RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|300796173|ref|NP_001179215.1| helicase-like transcription factor [Bos taurus]
 gi|297471227|ref|XP_002685073.1| PREDICTED: helicase-like transcription factor [Bos taurus]
 gi|296491102|gb|DAA33185.1| helicase-like transcription factor [Bos taurus]
          Length = 1009

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK-------- 86
           A   +++ + +     KI AL      + +K      +V   F + L+ ++         
Sbjct: 818 ACNTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 877

Query: 87  --AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 878 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNP 936

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q  +R       + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 937 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 981


>gi|301106883|ref|XP_002902524.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098398|gb|EEY56450.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1449

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 72   IVAYHFNSDLARLQKAFPQG------RTLD------KDPCTIQEWN-EGKIPLLFAHPAS 118
            +V  H    L   ++           R LD      K    +Q++N +  I +L    + 
Sbjct: 1238 LVFAHLQKTLDLTEQMLENALPGVTYRRLDGRTPHTKRADIVQQFNADPSIDVLLLTTSV 1297

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GL L  G + ++F    W+     Q ++R       + G KR V V+ LI + +++E
Sbjct: 1298 GGLGLTLT-GADTVIFLEHSWNPFVDLQAMDR-----AHRIGQKRTVRVFRLIMERSLEE 1351

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++     K  +   ++ 
Sbjct: 1352 HIVNLQEFKEQVAATVVQ 1369


>gi|8977885|emb|CAB95769.1| hypothetical protein [Homo sapiens]
          Length = 594

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 419 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 478

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 479 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 532

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 533 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 569


>gi|298376514|ref|ZP_06986469.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 3_1_19]
 gi|298266392|gb|EFI08050.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 3_1_19]
          Length = 563

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 21/205 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   +R+L   L+           K++K   +    +  D           K++ +  
Sbjct: 348 KEYQDAERDLVDYLRRYKEADDEKVQKSLKGEVMVRIGILKD------ITARGKLREVID 401

Query: 62  IIE--KANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWN-EGKIPLL 112
            ++  + N   II+  + +  + RL +AFP        + + +    I  +    K  ++
Sbjct: 402 FVKDFRENGKKIILFCNLHEIVDRLLQAFPSAVCVTGRQDMQQKQAAIDAFQRNPKTDVI 461

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+ L    N + F  L W   +  Q       +R  + G K +V  YYL+ 
Sbjct: 462 ICSIKAAAAGITLTASSN-VAFIELPWTYADCDQA-----ESRAHRIGQKDSVNCYYLLG 515

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           + TID+ + + +  K  I + +L A
Sbjct: 516 RKTIDQKLYRIIEEKKHISNAVLGA 540


>gi|150866895|ref|XP_001386641.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
 gi|149388151|gb|ABN68612.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
          Length = 1259

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPC- 99
              K + L+ ++ K  A+   +++ +          D  R   ++     G T  +D   
Sbjct: 797 TSGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRWRDMKYLRLDGSTKAEDRQE 856

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +N              + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 857 MLKVFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAH 910

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 911 RIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 952


>gi|47226612|emb|CAG07771.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1037

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRT 93
             H       K + L+ I+   +A    +++     S +  ++  F           G T
Sbjct: 520 SGHDLYRASGKFELLDRILPKLQATNHRVLLFCQMTSLMTIMEDYFSYRNFLYLRLDGTT 579

Query: 94  LDKDPCTI-QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D   + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q    
Sbjct: 580 KSEDRAALLKKFNEEGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA--- 635

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 636 --QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 680


>gi|195353657|ref|XP_002043320.1| GM26909 [Drosophila sechellia]
 gi|194127434|gb|EDW49477.1| GM26909 [Drosophila sechellia]
          Length = 264

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS IQ
Sbjct: 15  VIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQ 69

Query: 192 DLLLNA--LKKETIH 204
            ++++    K +T+ 
Sbjct: 70  RMVISGGNFKPDTLK 84


>gi|194100669|ref|YP_002003418.1| gp60 [Mycobacterium phage Predator]
 gi|192758385|gb|ACF05157.1| gp60 [Mycobacterium phage Predator]
          Length = 670

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 28/216 (12%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD------EEKHWKEVHDE 54
           KQY + +RE   ++ G + I      ++  +C Q+AN  +  D        K        
Sbjct: 433 KQYREIEREALINIGGEDEITVNGVLAEMTRCKQIANSCLKTDGFKSDGNPKVVPVFPSN 492

Query: 55  KIKALEV-IIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
           K + +   ++++  N    IVA  F   L  L     +               +     +
Sbjct: 493 KAEWIHDFLVDRIENGTKTIVASQFTGFLNTLSAELEKKGIKHYLYTGATNEPERKRIRK 552

Query: 103 EWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+    G + ++  +  S G  L L    ++++     W  ++ +Q+ +R       +  
Sbjct: 553 EFQSESGDM-VVLLNTKSGGVSLTLDLADDVVI-VDQTWIPDDQEQVEDR-----AHRVS 605

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               V ++ L +  TIDE +      +      +L 
Sbjct: 606 RNHNVVIWNLASLGTIDEDIAVLNTERGEAISSILE 641


>gi|145614554|ref|XP_362144.2| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
 gi|145021462|gb|EDK05591.1| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
          Length = 1654

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----QKAFPQGRTLDKD------PC 99
              K+  L+ ++ K   +   +++       L  L    +    Q + LD          
Sbjct: 779 SSGKMMLLDQLLAKLKKDNHRVLIFSQMVKMLDILGDYLRVRGYQYQRLDGTIPAGPRRM 838

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+ +   Q + R       
Sbjct: 839 AINHFNAPDSEDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQADLQAMAR-----AH 892

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR V VY L+A+ T++E V+ R R K  ++ L + A
Sbjct: 893 RIGQKRPVNVYRLVAKQTVEEEVVNRARNKLFLEYLTIQA 932


>gi|308806421|ref|XP_003080522.1| chromatin-remodelling complex ATPase ISWI2 (ISS) [Ostreococcus
           tauri]
 gi|116058982|emb|CAL54689.1| chromatin-remodelling complex ATPase ISWI2 (ISS) [Ostreococcus
           tauri]
          Length = 1036

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 77/222 (34%), Gaps = 39/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q+  Y  +  ++I+  NS +   + L +                   G  Y   +   
Sbjct: 414 EMQKTFYKRILQKDIDIVNSGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYITGDHLI 473

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
           +     K+  L+ ++ +     + +++       L  L+      R            + 
Sbjct: 474 E--SSGKLALLDKLLPRLMERGSRVLIFSQMTRLLDILEDYMMYRRYQYCRIDGSTDGET 531

Query: 97  DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+   +         + G G+NL    + ++ +   W+ +   Q ++R    
Sbjct: 532 RENHIDAFNKEGSEKFAFLLSTRAGGLGINL-ATADTVIIYDSDWNPQMDLQAMDR---- 586

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+      +++E V+++   K  +  L++ 
Sbjct: 587 -AHRIGQKKEVQVFRFCTDGSVEEKVIEKAYKKLALDALVIQ 627


>gi|73986628|ref|XP_867815.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 18
            [Canis familiaris]
          Length = 1593

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1057 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1116

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1117 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1170

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1171 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1210


>gi|322792800|gb|EFZ16633.1| hypothetical protein SINV_04571 [Solenopsis invicta]
          Length = 3043

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I E+N   KI L      +   G+NL  G N  + F   W+     Q +      
Sbjct: 2077 EREKLINEFNSNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNPCHDTQAV-----C 2130

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2131 RVYRYGQKKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2172


>gi|330917877|ref|XP_003297996.1| hypothetical protein PTT_08573 [Pyrenophora teres f. teres 0-1]
 gi|311329044|gb|EFQ93908.1| hypothetical protein PTT_08573 [Pyrenophora teres f. teres 0-1]
          Length = 1069

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 21/153 (13%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCT 100
           K K L  +++   +N   +++  H    L  L+  F    T             +     
Sbjct: 646 KWKVLRRLLDFWHSNGDKVLIFSHSVRLLRLLRGLFDVDGTKYNFSYLDGSMKYEDRSQA 705

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++N +    +      + G GLN+     ++V     W+     Q        R  + 
Sbjct: 706 VADFNADPNQFVFLISTKAGGVGLNITSANKVVVM-DPHWNPAYDLQA-----QDRAYRI 759

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 760 GQTRNVEVFRLVSSGTIEEVVYARQIYKQQQAN 792


>gi|312086132|ref|XP_003144957.1| helicase DNA-binding protein [Loa loa]
 gi|307759879|gb|EFO19113.1| helicase DNA-binding protein [Loa loa]
          Length = 1412

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 69/199 (34%), Gaps = 27/199 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIKALE 60
           + ++  +++  + +           +Q +   V           + H   +  + ++ L 
Sbjct: 55  EEQILAEVKTGHPDWSEDDVYQYALVQSSGKLVLIAKLLPKLHTDGHKVLIFSQMVRVL- 113

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
            IIE+      ++A ++     R+          D     I  +++      +      +
Sbjct: 114 DIIEE-----FLIAQNYT--FERIDGNVRG----DLRQSAIDRFSKKDSDRFIFLLCTRA 162

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ F   W+ +   Q   R       + G  + V VY LI  NT + 
Sbjct: 163 GGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTKMVKVYRLITCNTYER 216

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +  +   K  +   +L +
Sbjct: 217 EMFDKASLKLGLDRAVLQS 235


>gi|74150111|dbj|BAE24366.1| unnamed protein product [Mus musculus]
          Length = 924

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDK-DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L +             G    +     +  +N EG         
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLS 861

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V F   W+ +   Q   R       + G K+ V +Y L+ + +
Sbjct: 862 TRAGGLGINL-ASADTVVIFDSDWNPQNDLQAQAR-----AHRIGQKKQVNIYRLVTKGS 915

Query: 176 IDELVLQR 183
           ++E +L+R
Sbjct: 916 VEEDILER 923


>gi|68076769|ref|XP_680304.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56501218|emb|CAH93993.1| DNA helicase, putative [Plasmodium berghei]
          Length = 1396

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
            K    V+  K++ L   I++   N   ++V   +   L  ++K           +    T
Sbjct: 1188 KKDNFVYSTKLRILFDHIKEDIKNELHVVVFSQWIGFLKIIEKLLTLHEIPNKIYDGSLT 1247

Query: 94   LDKDPCTIQEWN--EGKI---------------------PLLFAHPASCGHGLNLQYGGN 130
             ++   T+  +N  +GKI                      +L     + G GLNL    +
Sbjct: 1248 YEQRKSTLYWFNIQKGKIYQPGIGFCQSTCDIPIENESGKVLLCSLKAGGVGLNLTVS-S 1306

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +    LWW+     Q  ERI      + G  + V +Y  + + T++E +LQ  ++K   
Sbjct: 1307 KVYLMDLWWNPAIEDQAFERI-----HRIGQLKDVNIYKFVLEKTVEERILQIHQSKQYT 1361

Query: 191  QDLLLNAL 198
             +  L  +
Sbjct: 1362 ANQCLAQV 1369


>gi|67624283|ref|XP_668424.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis TU502]
 gi|54659629|gb|EAL38197.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis]
          Length = 807

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
           N + K  K  ++    V  ++EK     H      L  IIE+     I + Y+ +    R
Sbjct: 646 NGSCKLRKMNEIIQSTVIENKEKCLIFCHHT---MLLDIIEEY----IKIKYNMSDFYLR 698

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           L    P    + +    I+++   ++PL      + G GLNL    + ++   L ++ + 
Sbjct: 699 LDGTTP----ILERQNMIEKFQTTQVPLFLLSTKAAGQGLNLTVASS-VIMMDLDYNPQI 753

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +Q  +R+      + G  + V ++ L+ ++TI+E +    ++K T+ + 
Sbjct: 754 EKQAEDRV-----HRIGQSKQVKIFKLVCKDTIEENIFNCCQSKLTLDNA 798


>gi|195452364|ref|XP_002073321.1| GK14069 [Drosophila willistoni]
 gi|194169406|gb|EDW84307.1| GK14069 [Drosophila willistoni]
          Length = 808

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 19/154 (12%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWNEG 107
            L+ ++ + N   +IV   + S L  ++K             G+   KD   +  E+N+ 
Sbjct: 644 KLQQVLNETNDK-VIVVSQWTSFLDVIKKHLDSLSWETLAFNGKMSFKDRQLVLDEFNDT 702

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +L     + G GLNL    N L+   L W+ +  +Q  +RI      + G  +  
Sbjct: 703 NNSKRVLLLSLTAGGVGLNLNV-ANHLLLIDLHWNPQLEKQAQDRI-----YRYGQHKKT 756

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++Y  +  +TI++ +      K  +  +++N  +
Sbjct: 757 YIYRFMCVDTIEQRIQALQDYKLELAKMVINGGR 790


>gi|149701562|ref|XP_001497332.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
           actin-dependent regulator of chromatin, subfamily a,
           containing DEAD/H box 1 isoform 3 [Equus caballus]
          Length = 892

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 717 LDSGKFRVLGRILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 776

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 777 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 830

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 831 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 867


>gi|317150332|ref|XP_001823954.2| DNA excision repair protein (Rad26L) [Aspergillus oryzae RIB40]
          Length = 970

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +N   ++V  H    L  LQ  F              + +     + E+N + +  +   
Sbjct: 670 SNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMSYEDRATAVDEFNSDPRQFVFLI 729

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 730 STRAGGVGLNIT-SANKVVVVDPNWNPSYDLQA-----QDRAYRIGQVRDVEVFRLISAG 783

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 784 TIEEIVYARQIYKQQQAN 801


>gi|313217104|emb|CBY38281.1| unnamed protein product [Oikopleura dioica]
          Length = 1430

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LL 112
           KA    +++       L  L+              GR    D    I  + +      + 
Sbjct: 765 KAGGHKVLIFSQMIRVLDILEDYLYQMSMGFERLDGRIRGNDRQAAIDRFCKPDSDRFVF 824

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G K+ V +Y L+ 
Sbjct: 825 LLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQKKEVKIYRLLT 878

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
             T +  +  R   K  +   +L ++
Sbjct: 879 SKTYEREMFDRASLKLGLDRAVLQSM 904


>gi|315048349|ref|XP_003173549.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
 gi|311341516|gb|EFR00719.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
          Length = 922

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ-----KAFPQGRT------LDKD 97
              KI+AL  I+     A     +V   + S L  ++           R         +D
Sbjct: 748 SSSKIQALIKILTAKGQAAGTKTVVFSQWTSFLDLIEPQLALNNIKFARIDGKMNSSKRD 807

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  ++ +  ++ A    C  GLNL    N ++    WW      Q ++R+      
Sbjct: 808 AAMSKLTHDPECSVMLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV-----Y 861

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G +RA  ++ L+ +N+I++ VL   + K  +
Sbjct: 862 RLGQQRATTIWRLVMENSIEDRVLDIQKEKREL 894


>gi|194389378|dbj|BAG61650.1| unnamed protein product [Homo sapiens]
          Length = 867

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 298 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 357

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 358 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 411

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 412 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 451


>gi|195569689|ref|XP_002102841.1| GD20115 [Drosophila simulans]
 gi|194198768|gb|EDX12344.1| GD20115 [Drosophila simulans]
          Length = 264

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS IQ
Sbjct: 15  VIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQ 69

Query: 192 DLLLNA--LKKETIH 204
            ++++    K +T+ 
Sbjct: 70  RMVISGGNFKPDTLK 84


>gi|21432058|gb|AAH32964.1| 0610007P08Rik protein [Mus musculus]
          Length = 394

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   +     +++       L  LQ+             G T  ++    
Sbjct: 200 SGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 259

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N+++ F   W+     Q ++R       + 
Sbjct: 260 VKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPANDLQAVDR-----AYRI 313

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 314 GQCRDVKVLRLISLGTVEEIMYLRQVYKQQLH 345


>gi|322697346|gb|EFY89127.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
            acridum CQMa 102]
          Length = 1142

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTL-------DKDPCTIQE 103
            +K L  I E       I+   +   L  L+     + FP+           D+     + 
Sbjct: 975  MKLLREIRE--TGEKTIIFSQWTLLLDLLEVAMWHEQFPEKPIRYDGSMSGDERSTAAKH 1032

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  +  ++     +   GLNL    + ++    +W+     Q I+R       + G +
Sbjct: 1033 FRDRPEYNVMLVSLRAGNAGLNLT-AASRVIIMDPFWNPYIEMQAIDR-----TYRIGQQ 1086

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + V VY ++ Q T+++ ++     K  I +  L+  +   I 
Sbjct: 1087 KEVEVYRILTQETVEDRIVALQNKKKEIVEAALDETESMKIG 1128


>gi|289622673|emb|CBI50942.1| unnamed protein product [Sordaria macrospora]
          Length = 1217

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLAR----LQKAFPQG 91
            + A Y  +          KI  L  I+  +A     IV   F S L      L+   P  
Sbjct: 965  SEAEYGVKRTKAPVTISSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDI 1024

Query: 92   RTLDKDPCTIQEWNE---------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            + +  D     +  E          +  +L         GLNL      ++    +W+  
Sbjct: 1025 KHVRYDGKMPNDAREASLHSLRKDPRTRVLLCSLKCGSLGLNLT-AATRVIIVEPFWNPF 1083

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +Q I+R+      +      V VY L  + T++  +L+    K  +    +  
Sbjct: 1084 VEEQAIDRV-----HRLTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQAAVEG 1133


>gi|225557429|gb|EEH05715.1| ATP-dependent helicase RIS1 [Ajellomyces capsulatus G186AR]
          Length = 1083

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 38/188 (20%)

Query: 47  HWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCT 100
             + +   KI+ L  I++  +     IV   F S L +++           R        
Sbjct: 810 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 869

Query: 101 IQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ--------- 145
           ++E       N  K  +L     +   GLNL    + +V    +W+   H          
Sbjct: 870 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLT-AASRVVILEPFWNPVWHSSASSQTIFY 928

Query: 146 ----------------QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                           Q +E   + R  +      V +Y L  +NT++E ++     K  
Sbjct: 929 SKFQSQKSELTCNQTPQFVEEQAIDRVHRLNQTVDVKIYKLTIKNTVEERIVDLQERKRE 988

Query: 190 IQDLLLNA 197
           + +  +  
Sbjct: 989 LANATIEG 996


>gi|225427375|ref|XP_002279753.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1084

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 24/166 (14%)

Query: 49   KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRT 93
              V  + + A     E  N   ++V   F   L  L                      R 
Sbjct: 872  IGVKTKFLMAFIRFSETMNEK-VLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRD 930

Query: 94   LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + +   +I  +N+   ++ +L A   +C  G++L  G + ++   + W+       +ER 
Sbjct: 931  VKQRQSSINTFNDPASQVRVLLASTKACSEGISL-VGASRVILLDVVWNPS-----VERQ 984

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++R  + G ++ V++Y+L+   T++E    R   K  + +L+ ++
Sbjct: 985  AISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSELVFSS 1030


>gi|310796849|gb|EFQ32310.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1069

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
              ++V  H    L  LQ  F              + +     + ++N      +     
Sbjct: 581 GDKVLVFSHSVRLLRILQHLFHNTSYSVTYLDGSVSYEDRQKAVDDFNSDPTQFVFLIST 640

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  TI
Sbjct: 641 KAGGVGLNIT-SANKVVIVDPHWNPSYDLQA-----QDRAYRIGQVRDVDVFRLVSTGTI 694

Query: 177 DELVLQRLRTKSTIQD 192
           +E+V  R   K    +
Sbjct: 695 EEIVYARQIYKQQQAN 710


>gi|296826202|ref|XP_002850936.1| SHREC complex subunit Mit1 [Arthroderma otae CBS 113480]
 gi|238838490|gb|EEQ28152.1| SHREC complex subunit Mit1 [Arthroderma otae CBS 113480]
          Length = 1445

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 20/144 (13%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIP--LLFA 114
               +++   F   L  + + F  G +L+           +    I  +N           
Sbjct: 933  GHRVLIFSQFLDFLD-IVEDFLDGLSLEHLRLDGRMNSLQKQKNIDAFNAPDSEYFAFLL 991

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + +V     ++  +  Q + R       + G K+ V V+ L+ + 
Sbjct: 992  STRAGGVGINL-ATADTVVILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRG 1045

Query: 175  TIDELVLQRLRTKSTIQDLLLNAL 198
            + +E ++Q  + K  +  +L+  +
Sbjct: 1046 SAEEKIMQIGKKKMALDHVLIERM 1069


>gi|157118940|ref|XP_001659258.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
 gi|108875506|gb|EAT39731.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
          Length = 2625

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 86   KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   T  +    I E+N    I L      +   G+NL  G N +V F   W+    
Sbjct: 1468 YRLDGSTTAQEREKLINEFNSNPNIHLFLVSTRAGSLGINL-VGANRVVVFDASWNPCHD 1526

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             Q +      R  + G K+  FVY L+  N +++ +  R   K  + D +++
Sbjct: 1527 TQAV-----CRVYRYGQKKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRIVD 1573


>gi|20259462|gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
          Length = 1055

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++EA N+  +  + L +A                  G  Y   +   
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
                  +    +   K   + +++       L  L+        L          D+  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    ++ I+E V++R   K  +  L++ 
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640


>gi|297829170|ref|XP_002882467.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328307|gb|EFH58726.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1055

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++EA N+  +  + L +A                  G  Y   +   
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
                  +    +   K   + +++       L  L+        L          D+  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    ++ I+E V++R   K  +  L++ 
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640


>gi|226286603|gb|EEH42116.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb18]
          Length = 1092

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 876  YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 929

Query: 64   EKANAAPI--IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGK-I 109
            +    API  IV   + S L  +Q A                 L +    +  + +   +
Sbjct: 930  KSPEKAPIKSIVFSSWTSHLDLIQIALEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 989

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL  G    +     ++     Q ++R+      + G  R V    
Sbjct: 990  TILLATLGAGGVGLNLTSGSRAYIM-EPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1043

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
             I +++I+E + +  R K  + D+ LN
Sbjct: 1044 FIMKDSIEEKIAELARKKQQMADMSLN 1070


>gi|296809169|ref|XP_002844923.1| DNA repair protein RAD5 [Arthroderma otae CBS 113480]
 gi|238844406|gb|EEQ34068.1| DNA repair protein RAD5 [Arthroderma otae CBS 113480]
          Length = 919

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE----KIKALEVIIEKAN---AAPIIVAYHFNS 79
           ++   C  L + A    E+ +  EV  E    KI+AL  I+           +V   + S
Sbjct: 716 AEIKDCSALVSPAAELGEDSNEVEVDSESTSSKIQALIKILMAKGQVLGTKTVVFSQWTS 775

Query: 80  DLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++               +  +  +D    +  ++ +  ++ A    C  GLNL   
Sbjct: 776 FLDLIEPQLSLNNINFARIDGKMNSAKRDAAMRKLTHDPECTVMLASLNVCSVGLNL-VA 834

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++    WW      Q ++R+      + G  R   ++ L+ +++I++ VL   + K 
Sbjct: 835 ANQVILADSWWAPAIEDQAVDRV-----YRLGQTRPTTIWRLVMEDSIEDRVLDIQKEKR 889

Query: 189 TI 190
            +
Sbjct: 890 EL 891


>gi|145349184|ref|XP_001419020.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579250|gb|ABO97313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 956

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 77/222 (34%), Gaps = 39/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q+  Y  +  ++I+  NS +   + L +                   G  Y   +   
Sbjct: 332 EMQKTFYKRILQKDIDIVNSGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYITGDHLI 391

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKD 97
           +     K+  L+ ++ +     + +++       L  L         Q     G T    
Sbjct: 392 E--SSGKLALLDKLLPRLMQRGSRVLIFSQMTRLLDILEDYLMYRNYQYCRIDGSTDGAV 449

Query: 98  PCT-IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+   +         + G G+NL    + ++ +   W+ +   Q ++R    
Sbjct: 450 REDHIDAFNKEGSEKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPQMDLQAMDR---- 504

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V V+      +++E V+++   K  +  L++ 
Sbjct: 505 -AHRIGQKKEVQVFRFCTDGSVEEKVIEKAYKKLALDALVIQ 545


>gi|302678131|ref|XP_003028748.1| hypothetical protein SCHCODRAFT_112243 [Schizophyllum commune H4-8]
 gi|300102437|gb|EFI93845.1| hypothetical protein SCHCODRAFT_112243 [Schizophyllum commune H4-8]
          Length = 1327

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW- 104
            ++ALE + ++     +I+   + + L+ L     +              +     ++ + 
Sbjct: 1150 MEALERLFKEKPDEKVILVSQWTTALSLLSDYLSERHIAHVKYQGDMSRNARDAAVRAFM 1209

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + K  ++       G GLNL    N ++   L W      Q  +R+      + G  R 
Sbjct: 1210 AKDKAKVMLMSLKCGGVGLNLTRANN-VISLDLGWSEAVEAQAFDRV-----HRLGQTRK 1263

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V V  L+  NT+++ +L     K+ + D  L   K + I 
Sbjct: 1264 VRVERLVIDNTVEDRILGLQERKALLADGALGEGKGKKIG 1303


>gi|241952923|ref|XP_002419183.1| ATP-dependent helicase, putative; chromatin structure-remodeling
           complex protein, putative; nuclear protein Sth1/Nps1
           homologue, putative [Candida dubliniensis CD36]
 gi|223642523|emb|CAX42772.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1300

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQEWNEGKIPLL--FAH 115
              +++ +     +  +         +     G T  D+    ++ +N            
Sbjct: 831 GHRVLMFFQMTQIMDIMEDFLRWRDMKYLRLDGSTKADERQDMLKVFNAPDSEYFCFLLS 890

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI  ++
Sbjct: 891 TRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITNDS 944

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           ++E++L+R   K  I   ++ A K
Sbjct: 945 VEEVILERAHQKLDIDGKVIQAGK 968


>gi|326478019|gb|EGE02029.1| chromatin remodeling complex subunit Chd3 [Trichophyton equinum CBS
            127.97]
          Length = 1412

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                 T  K    I  +N    +       
Sbjct: 1006 GHRVLIFSQFLDFLDIVEDFLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 1065

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 1066 TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 1119

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1120 AEEKIMQIGKKKMALDHVLIERM 1142


>gi|326473174|gb|EGD97183.1| hypothetical protein TESG_04598 [Trichophyton tonsurans CBS 112818]
          Length = 1422

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                 T  K    I  +N    +       
Sbjct: 910  GHRVLIFSQFLDFLDIVEDFLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 969

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 970  TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 1023

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1024 AEEKIMQIGKKKMALDHVLIERM 1046


>gi|327308268|ref|XP_003238825.1| chromatin remodeling complex subunit Chd3 [Trichophyton rubrum CBS
            118892]
 gi|326459081|gb|EGD84534.1| chromatin remodeling complex subunit Chd3 [Trichophyton rubrum CBS
            118892]
          Length = 1376

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                 T  K    I  +N    +       
Sbjct: 864  GHRVLIFSQFLDFLDIVEDFLDGLGLEHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 923

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 924  TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 977

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 978  AEEKIMQIGKKKMALDHVLIERM 1000


>gi|152984418|ref|YP_001349818.1| SNF2 family helicase [Pseudomonas aeruginosa PA7]
 gi|150959576|gb|ABR81601.1| helicase, SNF2 family [Pseudomonas aeruginosa PA7]
          Length = 658

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 493 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDR 552

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 553 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 606

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 607 RMVVVKIPLVEGTIDEQLWQLLNAKRQVAQDLIE 640


>gi|193083817|gb|ACF09499.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           SAT1000-23-F7]
          Length = 571

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL--ARLQKAFP----QGRTLDKDPCTIQEWNEGKI 109
           I+ ++ I+E   +  +   +     L    LQ+  P     G+T       I  +  G  
Sbjct: 403 IEFVKNIMEIEESVVVFCHHKAIHRLLHESLQEFHPSSIIGGQTDKDRQANIDRFQNGDT 462

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L+ A   +   G+NL      ++F  L W    H+Q  +R+      + G K  VF YY
Sbjct: 463 KLMIAGLRAGNLGINLTR-AKYVIFGELDWSPAIHRQAEDRL-----HRIGQKNTVFAYY 516

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           LI   T+DE V   L  KS   D +++ +
Sbjct: 517 LIGNGTLDEHVANILVDKSYEIDTIMDEV 545


>gi|196008026|ref|XP_002113879.1| hypothetical protein TRIADDRAFT_27056 [Trichoplax adhaerens]
 gi|190584283|gb|EDV24353.1| hypothetical protein TRIADDRAFT_27056 [Trichoplax adhaerens]
          Length = 871

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
           K+  LE +++K       +++       L  L+          +      + ++    I 
Sbjct: 583 KLIVLEKMLKKLKETGNRVLIFSQMTKMLDILEDFLDGLNYEYERIDGSTSGNERQALID 642

Query: 103 EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++N              + G G+NL    + ++ +   W+     Q       +R  + G
Sbjct: 643 KFNAPNATQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIG 696

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V +Y  + + +++E + Q  + K  +  L++
Sbjct: 697 QSNKVMIYRFVTRFSVEERITQVAKKKMMLTHLIV 731


>gi|22330875|ref|NP_187291.2| CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding
           / DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
          Length = 1055

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++EA N+  +  + L +A                  G  Y   +   
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
                  +    +   K   + +++       L  L+        L          D+  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    ++ I+E V++R   K  +  L++ 
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640


>gi|68568746|sp|Q8RWY3|ISW2_ARATH RecName: Full=Putative chromatin-remodeling complex ATPase chain;
           AltName: Full=ISW2-like; AltName: Full=Sucrose
           nonfermenting protein 2 homolog
 gi|6437558|gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
          Length = 1057

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++EA N+  +  + L +A                  G  Y   +   
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
                  +    +   K   + +++       L  L+        L          D+  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    ++ I+E V++R   K  +  L++ 
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640


>gi|223460528|gb|AAI36645.1| SMARCA4 protein [Homo sapiens]
          Length = 1681

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1142 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1201

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1202 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1255

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1256 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1295


>gi|156358635|ref|XP_001624622.1| predicted protein [Nematostella vectensis]
 gi|156211413|gb|EDO32522.1| predicted protein [Nematostella vectensis]
          Length = 659

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 39/181 (21%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK-------------------------- 86
           K+  L  IIE++      I++     S L+ +++                          
Sbjct: 399 KMVLLFEIIEESLKLGEKILIFSQSLSTLSIIEEFLNSRVVPFFPGRQSDPSTKWARNKS 458

Query: 87  --AFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   +  +    I  +N+    ++ L      +   G+NL  G + +V F   W+ 
Sbjct: 459 YFRLDGSTSAQERERLINAFNDNSSNEVLLFMLSTRAGCLGVNL-VGASRVVVFDSSWNP 517

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q +      R  + G  R   +Y LIA  T+++ +  R  +K  + + +++ L  E
Sbjct: 518 CHDVQAV-----CRVYRYGQVRPCHIYRLIATGTMEKKIYDRQVSKQGVANRVVDELNPE 572

Query: 202 T 202
            
Sbjct: 573 A 573


>gi|315054981|ref|XP_003176865.1| chromodomain-helicase-DNA-binding protein 5 [Arthroderma gypseum CBS
            118893]
 gi|311338711|gb|EFQ97913.1| chromodomain-helicase-DNA-binding protein 5 [Arthroderma gypseum CBS
            118893]
          Length = 1513

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  ++                 T  K    I  +N    +       
Sbjct: 1006 GHRVLIFSQFLDFLDIVEDFLDGLGLTHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLS 1065

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G K+ V V+ L+ + +
Sbjct: 1066 TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQKKKVMVFQLMTRGS 1119

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1120 AEEKIMQIGKKKMALDHVLIERM 1142


>gi|218289657|ref|ZP_03493877.1| SNF2-related protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240307|gb|EED07490.1| SNF2-related protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 572

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            K++A+  ++E A    +I+   + +    L     +         G         ++E 
Sbjct: 376 AKVEAVLKMLEDAPEK-VIIFTEYRASQDFLMYTLKKHGISAVPFRGGFRRGKKDWMREL 434

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              KI +L A   S G G+NLQ+  + ++ + L W+    +Q I RI      + G   +
Sbjct: 435 FSKKIRVLVA-TESGGEGINLQF-CHHMINYDLPWNPMRLEQRIGRI-----HRLGQTHS 487

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + +L+ ++TI+E +++ L+ K  + + ++
Sbjct: 488 CHIVHLVTKDTIEEHIMEILQEKVRMFEAVI 518


>gi|297279826|ref|XP_001093777.2| PREDICTED: chromodomain helicase DNA binding protein 1-like [Macaca
           mulatta]
          Length = 617

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVH 52
           MK    F+ E       + ++  N  S+  KC    +    +D           H  E  
Sbjct: 14  MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLIE-A 64

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-T 100
             K+  L+ ++    +    +++       L  LQ              G    ++    
Sbjct: 65  SGKLYLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 124

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G
Sbjct: 125 IKNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIG 178

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 179 QNKSVKVIRLIGRDTVEEIVSRKAASKLQLTNMIIEG 215


>gi|240279479|gb|EER42984.1| DNA excision repair protein [Ajellomyces capsulatus H143]
          Length = 979

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG-KIPLLFA 114
            N   ++V  H    L  LQ  F              + +     +  +N   +  +   
Sbjct: 576 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYEDRAKVVDNFNADIREFVFLI 635

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 636 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQARDVEVFRLVSAG 689

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 690 TIEEIVYARQIYKQQQAN 707


>gi|164426264|ref|XP_960829.2| hypothetical protein NCU10337 [Neurospora crassa OR74A]
 gi|157071265|gb|EAA31593.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1404

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
              K+  LEV++ K       +++   F   L  L+          +     ++  +   
Sbjct: 829 ASSKLLLLEVMLPKLRERGHRVLIFSQFLDQLTILEDFLAGMDLPYQRLDGSQSSMEKQK 888

Query: 100 TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N     L        + G G+NL    + ++     W+  +  Q + R       
Sbjct: 889 RIDAFNAPDSQLFCMLLSTRAGGVGINL-ATADTVIILDPDWNPHQDIQALSR-----AH 942

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G ++ V  + L+  ++ +E +LQ  R K  +  LL+  +
Sbjct: 943 RIGQQKKVLCFQLMTVDSAEEKILQIGRKKMALDHLLIETM 983


>gi|14091823|gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin [Oryza sativa]
 gi|15528681|dbj|BAB64747.1| putative DNA-dependent ATPase [Oryza sativa Japonica Group]
          Length = 1122

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    +++V +   W+ +   Q        R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQADLQA-----QDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 682


>gi|194384656|dbj|BAG59488.1| unnamed protein product [Homo sapiens]
          Length = 979

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           E         K+  L+ ++ K       +++       L  L+          +    G 
Sbjct: 30  EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 89

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 90  TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATTDTVIIFDSDWNPHNDIQA--- 145

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 146 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 183


>gi|328855031|gb|EGG04160.1| hypothetical protein MELLADRAFT_117156 [Melampsora larici-populina
            98AG31]
          Length = 1185

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 47   HWKEVHDEKI-KALEVI----IEKANAAPIIVAYHFNSDLARLQKAFP---------QGR 92
             +  +   K+   LE +    +E  +   +++   + S L  + +            QG 
Sbjct: 1000 QYAVIPSAKLVYLLEELKRLRVEAPDDR-VVILSQWTSFLDIVAQYLDENDFQYARYQGS 1058

Query: 93   TLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               K     + E+ +G  PL+       G GLNL  G N ++   L W      Q  +R+
Sbjct: 1059 MDSKARTAAVHEFQKGDKPLMLMSLKCGGVGLNLTRG-NRVINLDLAWTPASEAQAFDRV 1117

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  + G  + V V  L+  NT+++ +L+    K  I D
Sbjct: 1118 -----HRLGQTKIVNVKRLMINNTVEQRMLELQLKKQMITD 1153


>gi|115647222|ref|XP_797049.2| PREDICTED: similar to MGC108253 protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1279

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCTIQEWNE 106
            K L  + E+   + +++   F   L  +Q+             G+T + +    I ++N+
Sbjct: 1128 KMLADLKEQ--GSRVLLFSQFVMVLDIVQEYLKIRGHKFVRMDGQTPVAERAQLIDKFNK 1185

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               + +      + G G+NL    N ++   + ++    +Q  +R       + G  R V
Sbjct: 1186 NDSVFIFMLSTRAGGVGINLT-AANTVILHDIDFNPYNDKQAEDRC-----HRVGQTREV 1239

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V  L+++ TI+E +L   + K  ++  + + +  E
Sbjct: 1240 SVIRLVSKQTIEEGMLSCAKYKLKLEKQMTSGISGE 1275


>gi|296425383|ref|XP_002842221.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638482|emb|CAZ86412.1| unnamed protein product [Tuber melanosporum]
          Length = 1480

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
               +++   F   L  L+          +    G +  +    I  +N    K       
Sbjct: 1029 GHRVLMFTQFLGMLDILEDFLFALDLKYQRLDGGVSTLERQKRIDSFNAPDSKYFAFMLS 1088

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+NL    + ++     ++  +  Q + R       + G  + V V++L+ ++T
Sbjct: 1089 TRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR-----AHRIGQTKRVQVFHLVTRDT 1142

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K ++  L++  +
Sbjct: 1143 AEEKIIQIGKKKLSLDHLIIEKM 1165


>gi|256075325|ref|XP_002573970.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
 gi|238659162|emb|CAZ30203.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
          Length = 1323

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 31/154 (20%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--------- 107
               +++       L  L++                 + +    I+ +N           
Sbjct: 561 QGHKVLLFSQSRRMLTLLERLVQLMKFSYLRMDGTTPVSQRHELIRRFNYRSTSDSEKID 620

Query: 108 ------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                  I L        G G+NL     +L+ +   W+     Q  ER       + G 
Sbjct: 621 RTSDHLDIFLFLLTTRVGGLGVNLTSANRVLI-YDPDWNPTTDLQARERAW-----RIGQ 674

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V +Y L+   TI+E +  R   K  + + +L
Sbjct: 675 SRDVVIYRLLTSGTIEEKIYHRQIFKQFLTNRIL 708


>gi|325092609|gb|EGC45919.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 1032

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG-KIPLLFA 114
            N   ++V  H    L  LQ  F              + +     +  +N   +  +   
Sbjct: 629 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYEDRAKVVDNFNADIREFVFLI 688

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 689 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQARDVEVFRLVSAG 742

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 743 TIEEIVYARQIYKQQQAN 760


>gi|327538790|gb|EGF25438.1| SNF2 family helicase [Rhodopirellula baltica WH47]
          Length = 914

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 28  KTVKCL---QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDL 81
           +  KCL   ++A  + Y  +++  +  +  K++ L  ++E   A P   I++   +   L
Sbjct: 605 RMQKCLLMARMACDSTYLLDQEADE--YSSKLERLGELLEGLIADPTRKIVLFSEWRRML 662

Query: 82  ARLQKAFPQ---------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            R++    Q         G+   K    I  +  N+ +  +      +   GLNLQ   N
Sbjct: 663 TRIENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQNDPECRV-INMTNAGSTGLNLQ-AAN 720

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRT 186
            ++   L W+    +Q I R       + G +  V VY L+  +    TI+E +L  L +
Sbjct: 721 TVINVDLPWNPAVLEQRIAR-----AYRMGQENPVHVYKLVTTSEPTPTIEEGLLTTLAS 775

Query: 187 KSTIQDLLLN 196
           K  + D  LN
Sbjct: 776 KQDLADASLN 785


>gi|307213762|gb|EFN89100.1| Helicase ARIP4 [Harpegnathos saltator]
          Length = 3154

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 29/161 (18%)

Query: 59   LEVIIEKANAAPIIVAYHFN-----SDLARLQKAFPQGRTLD-----------------K 96
            LE  I   +         F        LAR    +P G+T D                 +
Sbjct: 2061 LEEAIRLGDRVLAFSQSLFTLNLIEDFLARNSLKYPDGQTDDWIKNVNYYRLDGSTSALE 2120

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I E+N   KI L      +   G+NL  G N  + F   W+     Q +      R
Sbjct: 2121 REKLINEFNSNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNPCHDTQAV-----CR 2174

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2175 VYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2215


>gi|225684822|gb|EEH23106.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 936

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 720 YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 773

Query: 64  EKANAAPI--IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGK-I 109
           +    API  IV   + S L  +Q A                 L +    +  + +   +
Sbjct: 774 KSPEKAPIKSIVFSSWTSHLDLIQIAMEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 833

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   + G GLNL  G    +     ++     Q ++R+      + G  R V    
Sbjct: 834 TILLATLGAGGVGLNLTSGSRAYIM-EPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 887

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I +++I+E + +  R K  + D+ LN
Sbjct: 888 FIMKDSIEEKIAELARKKQQMADMSLN 914


>gi|321455028|gb|EFX66174.1| hypothetical protein DAPPUDRAFT_332470 [Daphnia pulex]
          Length = 358

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 104 WN-EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           WN    IP L      + G G+NL    N ++ F   W+  +    I         + G 
Sbjct: 256 WNGSAHIPRLFLISTKAGGVGINL-VAANRVILFDTSWNPSQDVPSI-----FCVYRLGQ 309

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +  FVY  IAQ TI+E +  R  TK ++   +++  K
Sbjct: 310 TKPCFVYRFIAQGTIEEKIYDRQVTKQSLSCRVIDEHK 347


>gi|313231009|emb|CBY19007.1| unnamed protein product [Oikopleura dioica]
          Length = 1011

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGKIP--LLFA 114
           N + +++       L  +               G T  D    +++ +N           
Sbjct: 311 NGSRVLIFSQMVMMLDVISDYMALRRYQFQRLDGSTRGDLRQRSMEHFNAPNSTDFAFLL 370

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   W+ +   Q   R       + G K+ V +Y  ++  
Sbjct: 371 STRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKKTVKIYRFVSAM 424

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           +++E V++R + K  +  L++ 
Sbjct: 425 SVEEDVIERAKKKMVLDHLVIQ 446


>gi|253748230|gb|EET02490.1| DNA repair and recombination protein Rhp26p [Giardia intestinalis
           ATCC 50581]
          Length = 930

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 28/191 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWK---EVHDEKI----KALEVIIEKANAAPIIVAYHFNS 79
           +K ++   + +     D         +    K+    + L  +  +++   I+V      
Sbjct: 511 AKLIQLQHICDHPSLLDTTGTDAPELQESSCKLTYLMEKLTELWNQSHDK-ILVFCQGRM 569

Query: 80  DLARLQKAFPQGRTL-------------DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNL 125
            L+ ++KAF +                 D  P  I ++  +  I L        G GLNL
Sbjct: 570 MLSIVEKAFLEHSFFRDSYLRMDGHVPVDARPALISQFSTDPHIRLFLLTTRVGGLGLNL 629

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N +   +  W+     Q +ER       +    + V VY +    TI+E +  R  
Sbjct: 630 T-AANHVFLLNPNWNPTIDDQSVERCW-----RITQTKRVTVYKIFTGGTIEEKIFNRQI 683

Query: 186 TKSTIQDLLLN 196
            K  +   +L+
Sbjct: 684 YKRLLVSRVLD 694


>gi|195478527|ref|XP_002086509.1| GE22814 [Drosophila yakuba]
 gi|194186299|gb|EDW99910.1| GE22814 [Drosophila yakuba]
          Length = 611

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 384 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 437

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 438 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 482


>gi|134083903|emb|CAK48807.1| unnamed protein product [Aspergillus niger]
          Length = 1758

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 20/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
              + + L  II ++      ++V  H    L  ++    +              +     
Sbjct: 1352 SCRAEILNRIIAESVRAGDKVLVFSHSIPTLNYVENDILKAFGWKYCRLDGSTPMASRQA 1411

Query: 100  TIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +++N+G    +      + G GLN+ +G N ++ F   ++    +Q + R       +
Sbjct: 1412 ATKQFNQGSAEDVYLISTRAGGLGLNI-FGANRVIIFDFTFNPVWEEQAVGR-----AYR 1465

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G K+ VFVY  IA  T +E++  +   K+ +   +++
Sbjct: 1466 LGQKKPVFVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD 1503


>gi|118349265|ref|XP_001033509.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89287858|gb|EAR85846.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1285

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 78/193 (40%), Gaps = 28/193 (14%)

Query: 31   KCLQLANGAVYY----DEEKHWKEVHDEKI---KALEVIIEKAN--AAPIIVAYHFNSDL 81
            K  Q+           D+E+  +++  +K+     +  IIE+       I++   ++  +
Sbjct: 855  KLAQMNQSQSQNFNEGDDEEEQQQIDYKKLAKTDRVVDIIEQVQKKGEKILLFTQWHDSI 914

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130
             RL+K F              T+ +    + ++       ++     +   GLNL    N
Sbjct: 915  QRLKKRFEDLDIGYCELHGKMTIKQRAKQVHDFYRLPSKTVMVLSLMAGCVGLNLTCANN 974

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--NTIDELVLQRLRTKS 188
            +++    WW+     Q ++R+      + G K+ V VY  + +  ++ID  + +  + K 
Sbjct: 975  VIIM-DPWWNGAIEDQAVDRV-----YRIGQKKDVNVYRCLIKHDDSIDLRISELCKKKE 1028

Query: 189  TIQDLLLNALKKE 201
             + + +L+  + E
Sbjct: 1029 ALCNKILSLSQDE 1041


>gi|325183015|emb|CCA17469.1| hypothetical protein SELMODRAFT_162307 [Albugo laibachii Nc14]
          Length = 1363

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNS------DLARLQK---AFPQGRT-LDKDPCTIQEWNEGKIP--LLFAH 115
            + +++            D  R++K       GRT  +     I+ +NE      +    
Sbjct: 588 GSRVLLFTQMTRVLDIFEDFCRMRKYEYCRIDGRTSYEDRESAIEAYNELDSSKFVFLLS 647

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL Y  +I++ +   W+ +   Q        R  + G K+ V VY  +  ++
Sbjct: 648 TRAGGLGINL-YTADIVILYDSDWNPQADLQA-----QDRAHRIGQKKEVNVYRFVTSDS 701

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E +++R + K  +  +++ 
Sbjct: 702 VEEKIIERAQQKLKLDAMVVQ 722


>gi|158285422|ref|XP_564675.3| AGAP007573-PA [Anopheles gambiae str. PEST]
 gi|157019984|gb|EAL41756.3| AGAP007573-PA [Anopheles gambiae str. PEST]
          Length = 2705

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK---------------------AF 88
            +  K+     I+E++      ++V       L  +++                       
Sbjct: 1527 NSPKMDIFFCILEESIRLGDRLLVFSQSLLTLNLIERFLQHNKIPGTENYWAKNISYFRL 1586

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +    I E+N    + L      +   G+NL  G N +V F   W+     Q 
Sbjct: 1587 DGSTVAQEREKLINEFNSNPNVHLFLVSTRAGSLGINL-VGANRVVVFDASWNPCHDTQA 1645

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      R  + G K+  FVY L+  N +++ +  R   K  + D +++
Sbjct: 1646 V-----CRVYRYGQKKPCFVYRLVMDNCLEKKIYDRQINKQGMSDRIVD 1689


>gi|74189356|dbj|BAE22708.1| unnamed protein product [Mus musculus]
          Length = 517

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 201 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 260

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 261 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 314

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 315 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 354


>gi|149049422|gb|EDM01876.1| chromodomain helicase DNA binding protein 4, isoform CRA_e [Rattus
           norvegicus]
          Length = 940

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 117 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 176

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 177 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 230

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 231 SVEERITQVAKKKMML 246


>gi|320037542|gb|EFW19479.1| DNA repair protein RAD5 [Coccidioides posadasii str. Silveira]
          Length = 1091

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 51/188 (27%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL + +         +V   F S L  +             F            
Sbjct: 885  TSAKIHALILHLSSLPKNTKAVVFSQFTSFLDLIGAQLTREGIEHLRFDGSMQQKARKAI 944

Query: 101  IQEWN-----------------------------EGKIP-----LLFAHPASCGHGLNLQ 126
            + ++N                             +G I      +L     + G GLNL 
Sbjct: 945  LAQFNQMPEAFSEPEEDEDDNPMFLSTRSYKSNSKGNIEQPSPNVLLISLRAGGVGLNLT 1004

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N +     WW      Q I+R+      + G  + V V   + +N+I+E +L+    
Sbjct: 1005 -AANHVYMMDPWWSFAVEAQAIDRV-----HRMGQLKDVKVTRFVVKNSIEERMLRVQER 1058

Query: 187  KSTIQDLL 194
            K  I   L
Sbjct: 1059 KMMIAGSL 1066


>gi|299740345|ref|XP_001838866.2| hypothetical protein CC1G_09243 [Coprinopsis cinerea okayama7#130]
 gi|298404200|gb|EAU82981.2| hypothetical protein CC1G_09243 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCL--QLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           K +  +  D   E            +    QLA  +V    E   + +   K+K +  +I
Sbjct: 446 KRRANVILDSDDEMDTPEEKEVLIGRKTKEQLAKESV----ENMSRFLPSTKMKYMMELI 501

Query: 64  EKAN----AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGK 108
           EK+        I+V   + + L  +     +              +K    ++ + ++ K
Sbjct: 502 EKSFKSRPDEKILVVSQWTACLTLVSDYLAEKGIAHVKYQGDMDRNKRDQAVRVFMSKDK 561

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++       G GLNL    N ++   L W      Q  +R+      + G  R V V 
Sbjct: 562 ARVMLMSLKCGGVGLNLTRANN-VISLDLAWSRAVESQAWDRV-----HRLGQTRNVNVQ 615

Query: 169 YLIAQNTIDELVLQRLRTKSTIQD 192
            L+  NT+++ +L     K ++ D
Sbjct: 616 RLVIANTVEDRILALQERKQSLAD 639


>gi|303314479|ref|XP_003067248.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106916|gb|EER25103.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1193

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 51/188 (27%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL + +         +V   F S L  +             F            
Sbjct: 987  TSAKIHALILHLSSLPKNTKAVVFSQFTSFLDLIGAQLTREGIEHLRFDGSMQQKARKAI 1046

Query: 101  IQEWN-----------------------------EGKIP-----LLFAHPASCGHGLNLQ 126
            + ++N                             +G I      +L     + G GLNL 
Sbjct: 1047 LAQFNQMPEAFSEPEEDEDDNPMFLSTRSYKSNSKGNIEQPSPNVLLISLRAGGVGLNLT 1106

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N +     WW      Q I+R+      + G  + V V   + +N+I+E +L+    
Sbjct: 1107 -AANHVYMMDPWWSFAVEAQAIDRV-----HRMGQLKDVKVTRFVVKNSIEERMLRVQER 1160

Query: 187  KSTIQDLL 194
            K  I   L
Sbjct: 1161 KMMIAGSL 1168


>gi|156379809|ref|XP_001631648.1| predicted protein [Nematostella vectensis]
 gi|156218692|gb|EDO39585.1| predicted protein [Nematostella vectensis]
          Length = 824

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 22/180 (12%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
           F++A+   K  Q  +G    +            +K L+ + E+     +++       L 
Sbjct: 556 FHAAALEAKRTQ--SGGYEPNSLTEASGKLMLLVKMLKKLREQ--GHRVLIFSQMTRMLD 611

Query: 83  RLQKAFP----QGRTLDK------DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGN 130
            L+        +   +D           I  +N              + G G+NL    +
Sbjct: 612 LLEDFLEGHGYKYERIDGSVNGAARQEAIDRFNAPTSQAFCFLLSTRAGGLGINL-ATAD 670

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +  +   W+     Q       +R  + G    V +Y  + +++++E + Q  + K  +
Sbjct: 671 TVFIYDSDWNPHNDIQA-----FSRAHRIGQNNKVMIYRFVTRSSVEERITQVAKKKMML 725


>gi|119174712|ref|XP_001239697.1| hypothetical protein CIMG_09318 [Coccidioides immitis RS]
          Length = 1183

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 51/188 (27%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL + +         +V   F S L  +             F            
Sbjct: 977  TSAKIHALILHLSSLPKNTKAVVFSQFTSFLDLIGAQLTREGIEHLRFDGSMQQKARKAI 1036

Query: 101  IQEWN-----------------------------EGKIP-----LLFAHPASCGHGLNLQ 126
            + ++N                             +G I      +L     + G GLNL 
Sbjct: 1037 LAQFNQMPEAFSEPEEDEDDNPMFLSTRSYKSNSKGNIEQPSPNVLLISLRAGGVGLNLT 1096

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N +     WW      Q I+R+      + G  + V V   + +N+I+E +L+    
Sbjct: 1097 -AANHVYMMDPWWSFAVEAQAIDRV-----HRMGQLKDVKVTRFVVKNSIEERMLRVQER 1150

Query: 187  KSTIQDLL 194
            K  I   L
Sbjct: 1151 KMMIAGSL 1158


>gi|68490054|ref|XP_711148.1| hypothetical protein CaO19.6291 [Candida albicans SC5314]
 gi|68490091|ref|XP_711130.1| hypothetical protein CaO19.13670 [Candida albicans SC5314]
 gi|46432408|gb|EAK91891.1| hypothetical protein CaO19.13670 [Candida albicans SC5314]
 gi|46432427|gb|EAK91909.1| hypothetical protein CaO19.6291 [Candida albicans SC5314]
          Length = 972

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 27/168 (16%)

Query: 47  HWKEVHDEKIKA---------LEVIIEKANAAPIIVAYHFNSDLARLQK---------AF 88
            WK   ++ + +         L+ II+      +++   F   L  L++         A 
Sbjct: 803 KWKLGDEKFLDSGKVIELGKILQHIID-NKEEKVLIFSLFTQVLDILERVLSIFNYKFAR 861

Query: 89  PQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  ++    I  +N + KI +      + G G+NL    N ++ F   ++  E +Q
Sbjct: 862 LDGNTPVQERQDLIDLFNQDDKIHIFLISTKAGGVGINL-VAANHVIMFDQSFNPHEDKQ 920

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +R       + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 921 AEDR-----AHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 963


>gi|242057381|ref|XP_002457836.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
 gi|241929811|gb|EES02956.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
          Length = 1070

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 432 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 491

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 492 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 551

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N    +  +      + G G+NL    +++V +   W+ +   Q        R 
Sbjct: 552 ASIEAFNRPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQADLQA-----QDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 606 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 645


>gi|115436572|ref|NP_001043044.1| Os01g0367900 [Oryza sativa Japonica Group]
 gi|57012942|sp|Q7G8Y3|ISW2_ORYSJ RecName: Full=Probable chromatin-remodeling complex ATPase chain;
           AltName: Full=ISW2-like; AltName: Full=Sucrose
           nonfermenting protein 2 homolog
 gi|54290802|dbj|BAD61441.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|57900237|dbj|BAD88342.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|58737200|dbj|BAD89475.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|113532575|dbj|BAF04958.1| Os01g0367900 [Oryza sativa Japonica Group]
 gi|215740512|dbj|BAG97168.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618445|gb|EEE54577.1| hypothetical protein OsJ_01780 [Oryza sativa Japonica Group]
          Length = 1107

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    +++V +   W+ +   Q        R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQADLQA-----QDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 682


>gi|148709693|gb|EDL41639.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 2, isoform CRA_b [Mus
           musculus]
          Length = 1235

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 727 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 786

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 787 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 840

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 841 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 880


>gi|115473863|ref|NP_001060530.1| Os07g0660200 [Oryza sativa Japonica Group]
 gi|113612066|dbj|BAF22444.1| Os07g0660200 [Oryza sativa Japonica Group]
          Length = 631

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69  APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
             +++       L  L +             G T  D     ++ +N             
Sbjct: 20  HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLST 79

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   ++
Sbjct: 80  RAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQQETVNIYRFVTCKSV 133

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETI 203
           +E +L+R + K  +  L++  L  E  
Sbjct: 134 EEDILERAKKKMVLDHLVIQKLNAEGR 160


>gi|322821691|gb|EFZ27947.1| hypothetical protein TCSYLVIO_5838 [Trypanosoma cruzi]
          Length = 1530

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG-KIP 110
           IIE  +   +++   + S L  L++   +   L                I+ + E   I 
Sbjct: 557 IIEGLHEK-VVLFSTYRSHLFLLKQLLRKRGLLAEVMHGGLDVKDRQRIIERFTEDTSIS 615

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G G+NL    N  + F + W+  +  Q   R+      + G +R V VY +
Sbjct: 616 VLLCSTKASGVGINL-VAANHCILFDVSWNPADDTQATYRL-----YRYGQQRPVTVYRI 669

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
               T + +V     +K+ +   +++
Sbjct: 670 ATDGTFEHVVFFYALSKTWLHKKIVD 695


>gi|221504382|gb|EEE30057.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           VEG]
          Length = 1139

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDE---KIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
            ++  ++AN    + +E    E       K + L+ ++ K       +++       L  
Sbjct: 491 LMQLRKIANHPYLFVDEYLVNEDLVRVAGKFECLDRMLPKLLHFKHKVLIFSQMTQVLDL 550

Query: 84  LQKAF-----PQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           + +          R      L +    ++E+N  ++   +      + G GLNLQ   + 
Sbjct: 551 MAEYMHLRGYKYARLDGSVGLTERKERMEEFNNAEVDTMIFMLSTRAGGLGLNLQ-AADT 609

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V F   ++  +  Q +      R  + G  + V V+ L+  + ++E++L++   K  I 
Sbjct: 610 VVLFDSDFNPHQDLQAM-----CRAHRLGQTKQVKVFRLVTISGVEEIILEKANRKLNID 664

Query: 192 DLLLNA 197
            +++ A
Sbjct: 665 QMVIQA 670


>gi|198463980|ref|XP_002135618.1| GA28654 [Drosophila pseudoobscura pseudoobscura]
 gi|198151489|gb|EDY74245.1| GA28654 [Drosophila pseudoobscura pseudoobscura]
          Length = 1677

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     I +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1188 EDRGELLRKFNAKGSDIFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1241

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1242 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1286


>gi|545018|gb|AAC60670.1| homeotic gene regulator [Mus sp.]
          Length = 1022

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 486 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 545

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 546 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 599

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 600 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 639


>gi|164607171|ref|NP_001101334.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Rattus
           norvegicus]
          Length = 1024

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 849 LDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 908

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 909 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 962

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 963 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 999


>gi|221120099|ref|XP_002160992.1| PREDICTED: similar to predicted protein, partial [Hydra
            magnipapillata]
          Length = 1601

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK--------------------AFPQ 90
              K+  L  I+  A      ++V       L  ++                         
Sbjct: 1404 SGKLILLCEILADAEVVGDKVLVFSQSLCTLNLIEATLSDIQNDNLCKWCHGVDYFRMDG 1463

Query: 91   GRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              ++ K     + +N+ K     L      +   G+N+  G N ++ F   W+     Q 
Sbjct: 1464 STSVQKRTRWAEIFNDPKNERCRLFLISTRAGSLGINM-VGANRVIIFDCSWNPSHDVQS 1522

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R+      + G ++ V+VY  +AQ T++E + +R  TK      +++
Sbjct: 1523 VFRV-----YRFGQEKPVYVYRFVAQGTMEEKIYERQITKLATAGRVVD 1566


>gi|322711766|gb|EFZ03339.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
           anisopliae ARSEF 23]
          Length = 783

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 25/164 (15%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQ----------GRTLDKDPCT 100
           +K L  I E       I+   +   L  L+     + FP+          G    K    
Sbjct: 616 MKLLREIRE--TGEKTIIFSQWTLLLDLLEVAMWHEQFPEKPIRYDGSMTGEERSKAAKA 673

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++    +  ++     +   GLNL    + ++    +W+     Q I+R       + G
Sbjct: 674 FRD--LPECNVMLVSLRAGNAGLNLT-AASRVIIMDPFWNPYIEMQAIDR-----TYRIG 725

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + V VY ++ Q T+++ ++     K  I +  L+  +   I 
Sbjct: 726 QPKEVEVYRILTQETVEDRIVALQNKKKEIVEAALDETESMKIG 769


>gi|301119013|ref|XP_002907234.1| chromatin-remodeling complex ATPase chain, putative [Phytophthora
           infestans T30-4]
 gi|262105746|gb|EEY63798.1| chromatin-remodeling complex ATPase chain, putative [Phytophthora
           infestans T30-4]
          Length = 1385

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 59/141 (41%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAH 115
            + +++       L  ++              G+T  +    +I E+N+      L    
Sbjct: 598 GSRVLIFTQMTRVLDIMEDFCRMRLYDYCRIDGQTSYEDRESSIDEYNKPNSSKFLFLLS 657

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL Y  ++++ +   W+ +   Q        R  + G K+ V VY L+  ++
Sbjct: 658 TRAGGLGINL-YTADVVILYDSDWNPQADLQA-----QDRAHRIGQKKEVNVYRLVTTDS 711

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E +++R + K  +  +++ 
Sbjct: 712 VEEKIIERAQQKLKLDAMVVQ 732


>gi|313239189|emb|CBY14147.1| unnamed protein product [Oikopleura dioica]
          Length = 522

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTI 101
             K+  L  +++    A I++  +    L  ++K                +  +++    
Sbjct: 183 SGKLLILAHLLDALIPAKILIFSNSKKILTIIEKLLSGKNIKYDRIDGTIQPKERNNKVH 242

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +   +  I +          GL L      ++ F  +W+  +  Q ++R       + G 
Sbjct: 243 RFQTDSTIKVCLLTTGVGAVGLTLT-AATRVIVFDPYWNPSKDDQAVDR-----AYRIGQ 296

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K AV V+ LI   TI+E +  +   K +I
Sbjct: 297 KNAVVVFRLITCETIEEKIYSKQLFKKSI 325


>gi|255726422|ref|XP_002548137.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida tropicalis MYA-3404]
 gi|240134061|gb|EER33616.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida tropicalis MYA-3404]
          Length = 1286

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYH------FNSDLAR---LQKAFPQGRTLDKDPCT- 100
             K + L+ I+ K   +   +++ +          D  R   ++     G T  +D    
Sbjct: 810 SGKFELLDRILPKFKKSGHRVLMFFQMTQVMDIMEDFLRWRNMKYLRLDGGTKAEDRQDM 869

Query: 101 IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N              + G GLNLQ   + +V F   W+  +  Q        R  +
Sbjct: 870 LKVFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQDLQA-----QDRAHR 923

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 924 IGQKNEVRILRLITNDSVEEMILERAHQKLDIDGKVIQAGK 964


>gi|124513598|ref|XP_001350155.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23615572|emb|CAD52564.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1446

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 41/185 (22%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
            K    V+  K+K L   +  +  N   I+V   +   L  ++K           +    T
Sbjct: 1234 KKDNFVYSTKLKKLFEHVQNDMQNELHIVVFSQWIGFLKIIEKLLNLYNIANKIYDGSLT 1293

Query: 94   LDKDPCTIQEWN--EGKI---------------------PLLFAHPASCGHGLNLQYGGN 130
             ++   T+  +N  +GKI                      +L     + G GLNL    +
Sbjct: 1294 FEQRKATLNWFNIQKGKIYQPGVGFIKPSYVIPVENFAGKVLLCSLKAGGVGLNLTVS-S 1352

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +    LWW+     Q  ER+      + G  + V +Y  + + T++E +LQ  ++K   
Sbjct: 1353 KVYLMDLWWNPAIEDQAFERV-----HRIGQLKEVNIYKFVLEKTVEERILQIHQSKQYT 1407

Query: 191  QDLLL 195
             + +L
Sbjct: 1408 ANQIL 1412


>gi|270010554|gb|EFA07002.1| hypothetical protein TcasGA2_TC009972 [Tribolium castaneum]
          Length = 945

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 35/207 (16%)

Query: 17  GENIEAFNSASKTVKCLQLANGA-VY----YDEEKHWKEVHDEK------------IKAL 59
            EN    N         ++ N   +Y     +E +  + V D+K            + AL
Sbjct: 467 AENQTRANVLISITALRKICNHPDIYLHAAGEEAEDDQNVCDKKFGYYKKSGKMIVVSAL 526

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK- 108
             I +K     +++     + +   ++   Q         G T        I ++NE   
Sbjct: 527 LKIWKK-QKHRVLLFTQSRAMITIFEEFLKQQGYTYLKMDGSTAVSSRQPLINKFNEDSS 585

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +        G G+NL  G + ++ +   W+     Q  ER       + G ++ V +Y
Sbjct: 586 YDVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPATDTQARERAW-----RIGQEKQVTIY 639

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L++  TI+E + QR   K  + + +L
Sbjct: 640 RLLSAGTIEEKMYQRQVWKQLLSNKVL 666


>gi|47213811|emb|CAF92584.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1683

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1142 ASGKFEVLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGM 1201

Query: 101  I-QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +N+ +    +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1202 LLKTFNDPESEYFIFLLSTRAGGLGLNLQ-SADTVVIFDSDWNPHQDLQA-----QDRAH 1255

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   ++++E +L   + K  +   ++ A
Sbjct: 1256 RIGQQNEVRVLRLCTVSSVEEKILAAAKYKLNVDQKVIQA 1295


>gi|11994614|dbj|BAB02751.1| unnamed protein product [Arabidopsis thaliana]
          Length = 653

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ +   +     +   GLN+    + ++   LWW+     Q I+R       + G  RA
Sbjct: 518 NDYETGAMLMSLKAGNLGLNM-VAASHVILLDLWWNPTTEDQAIDR-----AHRIGQTRA 571

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
           V V  +  +NT++E +L     K  I
Sbjct: 572 VTVTRIAIKNTVEERILTLHERKRNI 597


>gi|212535646|ref|XP_002147979.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210070378|gb|EEA24468.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1784

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDP 98
            H  +    + I+E++      I+        L  L+               +     +  
Sbjct: 1381 HSYRADIFKKIVEESVRVGDKILCFSQSIPSLNYLETLLRSSGVRFNRLDGKTAVKSRQE 1440

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  N   I +      + G GLN+  G N ++ F   ++    +Q + R       +
Sbjct: 1441 AVKDFNNRDDIKVYLISTRAGGLGLNIT-GANRVIIFDFSFNPTWEEQAVGR-----AYR 1494

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G K+ V++Y  ++  T +E+V  +   K+ +   +++
Sbjct: 1495 LGQKKPVYIYRFLSGGTYEEVVHNKSIFKTQLAMRVVD 1532


>gi|313231904|emb|CBY09016.1| unnamed protein product [Oikopleura dioica]
          Length = 1677

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LL 112
           KA    +++       L  L+              GR    D    I  + +      + 
Sbjct: 705 KAGGHKVLIFSQMIRVLDILEDYLYQMSMGFERLDGRIRGNDRQAAIDRFCKPDSDRFVF 764

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G K+ V +Y L+ 
Sbjct: 765 LLCTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQKKEVKIYRLLT 818

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
             T +  +  R   K  +   +L ++
Sbjct: 819 SKTYEREMFDRASLKLGLDRAVLQSM 844


>gi|168042770|ref|XP_001773860.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162674847|gb|EDQ61350.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1566

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D+    I+ +N+  GKI +L A   +CG G+ L  G + +VF  + W+    +Q I R  
Sbjct: 1360 DERQSIIERFNDRKGKIRVLLASTKACGEGITLT-GASRVVFMDVLWNPAVIRQAIHR-- 1416

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G + AV VY L+A  T++E   QR+ +K      +   
Sbjct: 1417 ---AFRIGQRNAVHVYRLVASGTMEESKYQRMVSKDWKSQSIFRG 1458


>gi|330906609|ref|XP_003295534.1| hypothetical protein PTT_01525 [Pyrenophora teres f. teres 0-1]
 gi|311333094|gb|EFQ96362.1| hypothetical protein PTT_01525 [Pyrenophora teres f. teres 0-1]
          Length = 1027

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 57/155 (36%), Gaps = 21/155 (13%)

Query: 51  VHDEKIKALEVIIEK--ANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
           +   KI     ++ +  AN      ++   F S L  ++          + +     +D 
Sbjct: 851 IPSAKINRTIELLNEIRANDPTEKTLIFSQFTSLLDLVEVPLWREGIKYQRYDGSMKMDD 910

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  + +     ++     +   GLNL     +++    +W+    +Q ++R     
Sbjct: 911 RAEAVNLFMDNPNQNVMLVSIKAGNAGLNLWKASQVIIL-DPFWNPFIEEQAVDR----- 964

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +    R V+V+ ++  +T+++ ++     K  I
Sbjct: 965 AHRMPQTREVYVHRILVPDTVEDRIVMLQDKKREI 999


>gi|238880670|gb|EEQ44308.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida albicans WO-1]
          Length = 1302

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEGKIPLL--FAH 115
              +++ +     +  +         +     G T  ++    ++ +N            
Sbjct: 836 GHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLS 895

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI  ++
Sbjct: 896 TRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITNDS 949

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           ++E++L+R   K  I   ++ A K
Sbjct: 950 VEEVILERAHQKLDIDGKVIQAGK 973


>gi|50292251|ref|XP_448558.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527870|emb|CAG61521.1| unnamed protein product [Candida glabrata]
          Length = 830

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTL 94
           + +  W+     KI+AL      +         IV   F S L     RL++A  Q   L
Sbjct: 650 NMKGTWR--SSTKIEALVEELYKLRSPVKTVKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 707

Query: 95  D------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +   TI+ + +  +  +      + G  LNL     + +    WW+     Q 
Sbjct: 708 QGSMSPTQRDQTIKYFMDNIECEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQS 766

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 767 GDRV-----HRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATIN 810


>gi|154279660|ref|XP_001540643.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412586|gb|EDN07973.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 990

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG-KIPLLFA 114
            N   ++V  H    L  LQ  F              + +     +  +N   +  +   
Sbjct: 611 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYEDRAKVVDNFNADVREFVFLI 670

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 671 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQARDVEVFRLVSAG 724

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 725 TIEEIVYARQIYKQQQAN 742


>gi|4056412|gb|AAC97986.1| BRG-1-HUMAN [AA 812-1440] [Homo sapiens]
          Length = 628

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 265 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 324

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 325 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 378

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 379 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 418


>gi|157103789|ref|XP_001648131.1| helicase [Aedes aegypti]
 gi|108880486|gb|EAT44711.1| helicase [Aedes aegypti]
          Length = 707

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 20/161 (12%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                 ++  L+ ++++ +   + +++       L  L+                   ++
Sbjct: 441 IVDVSSRMIVLDKLLDELHKRGSRVLLFSQMVIMLNVLEDYMEWKGYKYHRMTGTTQQEE 500

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N       +      + G G+NLQ   + ++F+ L W+ +   Q  +R    
Sbjct: 501 RQAMIDEFNSPGSDTFIFMITTRTGGIGINLQT-ADTVIFYDLDWNPQADFQAEDR---- 555

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G  + V V       T+DE V      K  +   ++
Sbjct: 556 -AHRIGQTKQVHVIRFTVVGTVDEYVHVCSNRKQALDKAIV 595


>gi|85690939|ref|XP_965869.1| helicase DNA-binding protein [Encephalitozoon cuniculi GB-M1]
 gi|19068436|emb|CAD24904.1| similarity to CHROMODOMAIN HELICASE DNA-BINDING PROTEIN 2
           [Encephalitozoon cuniculi GB-M1]
          Length = 1251

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHP 116
             +++       L  L +              G   +     I  +++    + +     
Sbjct: 665 HKVLIFSQMTRCLDLLAEYLAYRKYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLST 724

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +   Q   R       + G    V VY L+ +NT 
Sbjct: 725 RAGGVGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTSEVKVYRLVTENTY 778

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +  +  +   K  +   +L  +
Sbjct: 779 EREMFDKAGLKLGLDRAVLQKM 800


>gi|68471523|ref|XP_720068.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
 gi|68471790|ref|XP_719938.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441784|gb|EAL01078.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441919|gb|EAL01212.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
          Length = 1303

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEGKIPLL--FAH 115
              +++ +     +  +         +     G T  ++    ++ +N            
Sbjct: 836 GHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLS 895

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNLQ   + ++ F   W+  +  Q        R  + G K  V +  LI  ++
Sbjct: 896 TRAGGLGLNLQT-ADTVIIFDTDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITNDS 949

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           ++E++L+R   K  I   ++ A K
Sbjct: 950 VEEVILERAHQKLDIDGKVIQAGK 973


>gi|326918512|ref|XP_003205532.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Meleagris gallopavo]
          Length = 927

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRT-LDK 96
           + +   K + LE ++         +++   F   L  L+              G+T +  
Sbjct: 750 QILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISD 809

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I E+N    I +      + G G+NL    N+++   +  +    +Q  +R     
Sbjct: 810 RIHLIDEFNTDMGIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC---- 864

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V V  LI++ TI+E +L+  + K  ++  +  A
Sbjct: 865 -HRVGQTREVKVIKLISKGTIEESMLKMNQQKLKLEQDMTAA 905


>gi|253744203|gb|EET00442.1| DNA-dependent ATPase, putative [Giardia intestinalis ATCC 50581]
          Length = 1272

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 44  EEKHWKEVHDE--KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQG 91
           E  H   V  +   +  L   I+  N   ++V     S L  ++                
Sbjct: 484 EGDHIVNVSGKMVVLDKLITRIKAINEK-VLVFCQMTSMLNIIEDYLRYREHLYCRIDGS 542

Query: 92  RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             L+     ++ +N    P+        +   GLNL    N ++ +   ++ +   Q + 
Sbjct: 543 TDLETRAKYMKMFNMPTSPVFVFLLSTRAGCLGLNLT-AANHVIIYQQDFNPQADLQAVA 601

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R       +    + VFVY L+A+NT+D  + +R + K  + +L++ 
Sbjct: 602 R-----AYRLLQTKEVFVYRLLAENTVDTRIYERAQLKLGLDNLIIQ 643


>gi|193084005|gb|ACF09679.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-202-A2]
          Length = 569

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL--ARLQKAFP----QGRTLDKDPCTIQEWNEGKI 109
           I+ ++ I+E   +  +   +     L    LQ+  P     G+T       I  + +G  
Sbjct: 403 IEFVKNIMEIEESVVVFCHHKAIHRLLHESLQEFHPSSIIGGQTDKVRQLNIDRFQDGDT 462

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L+ A   +   G+NL      ++F  L W    H+Q  +R+      + G K  VF YY
Sbjct: 463 KLMIAGLRAGNLGINLTR-AKYVIFGELDWSPAIHRQAEDRL-----HRIGQKNTVFAYY 516

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           LI   T+DE V   L  KS   D +++ ++
Sbjct: 517 LIGNGTLDEHVANILVDKSYEIDTIMDEVR 546


>gi|170590139|ref|XP_001899830.1| Associated with TFs and helicases family protein [Brugia malayi]
 gi|158592749|gb|EDP31346.1| Associated with TFs and helicases family protein [Brugia malayi]
          Length = 2707

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 27/199 (13%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIKALE 60
            + ++  +++  + +           +Q +   V           + H   +  + ++ L 
Sbjct: 1347 EEQILAEVKAGHPDWSEDDIYQHALVQSSGKLVLIAKLLPKLRTDGHKVLIFSQMVRVL- 1405

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
             IIE+      +VA ++     R+          D     I  +++      +      +
Sbjct: 1406 DIIEE-----FLVAQNYT--FERIDGNVRG----DLRQSAIDRFSKKDSDRFIFLLCTRA 1454

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G G+NL    + ++ F   W+ +   Q   R       + G  + V VY LI  NT + 
Sbjct: 1455 GGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQTKMVKVYRLITCNTYER 1508

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +  +   K  +   +L +
Sbjct: 1509 EMFDKASLKLGLDRAVLQS 1527


>gi|221120608|ref|XP_002153791.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
           [Hydra magnipapillata]
          Length = 1665

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQEWN--EGKIPLLFA 114
               +++       L  L+        +   LD           I  +N    +I     
Sbjct: 830 QGHRVLIFSQMTRVLDLLEDFMEGHGWRYERLDGTITGGIRQSAIDRFNLPNSEIFSFLL 889

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + +  +   W+     Q       +R  + G +  V +Y  + ++
Sbjct: 890 STRAGGLGINL-ATADTVFIYDSDWNPHNDIQA-----FSRAHRIGQQNKVMIYRFVTKS 943

Query: 175 TIDELVLQRLRTKSTI 190
           T++E + Q  + K  +
Sbjct: 944 TVEERITQVAKKKMML 959


>gi|149062633|gb|EDM13056.1| rCG47910, isoform CRA_a [Rattus norvegicus]
          Length = 1239

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 731 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 790

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 791 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 844

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 845 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 884


>gi|302774573|ref|XP_002970703.1| hypothetical protein SELMODRAFT_411494 [Selaginella moellendorffii]
 gi|300161414|gb|EFJ28029.1| hypothetical protein SELMODRAFT_411494 [Selaginella moellendorffii]
          Length = 1538

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQEWNEG--KIPLLFAH 115
              +++       L  L               G T        ++ +N    +       
Sbjct: 780 GHRVLIFSQMVKMLDILADYLRLRGFQFQRLDGSTKHHLRQQAMEHFNAPGSEDFCFLLS 839

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   +
Sbjct: 840 TRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQEFVVNIYRFVTCRS 893

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           ++E +L+R + K  +  L++  L  +  
Sbjct: 894 VEEDILERAKKKMVLDHLVIQKLNAQGR 921


>gi|149049419|gb|EDM01873.1| chromodomain helicase DNA binding protein 4, isoform CRA_c [Rattus
           norvegicus]
          Length = 977

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFA 114
               +++       L  L+          +    G T +     I  +N    +      
Sbjct: 117 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLL 176

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+     Q       +R  + G  + V +Y  + + 
Sbjct: 177 STRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTRA 230

Query: 175 TIDELVLQRLRTKSTI 190
           +++E + Q  + K  +
Sbjct: 231 SVEERITQVAKKKMML 246


>gi|299747149|ref|XP_001841249.2| DNA repair protein rad16 [Coprinopsis cinerea okayama7#130]
 gi|298407389|gb|EAU80544.2| DNA repair protein rad16 [Coprinopsis cinerea okayama7#130]
          Length = 976

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 38/177 (21%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
              KI+AL      + +K      IV   F + L  +     +   +             
Sbjct: 801 SSSKIEALVEELSNLRQKDATTKSIVFSQFVNFLDLIAYRLQRAGFVVCRLEGTMSPQAR 860

Query: 98  PCTIQEW------------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             TI+ +                  N  ++ +      + G  LNL    + +     WW
Sbjct: 861 DATIKHFSKLHSGFWSAIAKTSNQVNNVEVTVFLVSLKAGGVALNLTE-ASRVYLMDSWW 919

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q ++RI      + G +R V    L+ +++I+  ++Q    KS + D  L+
Sbjct: 920 NPAVEFQAMDRI-----HRLGQRRPVEAIKLVVEDSIESRIVQLQEKKSAMIDATLS 971


>gi|194382486|dbj|BAG64413.1| unnamed protein product [Homo sapiens]
          Length = 834

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 298 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 357

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 358 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 411

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 412 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 451


>gi|315050848|ref|XP_003174798.1| transcription termination factor 2 [Arthroderma gypseum CBS 118893]
 gi|311340113|gb|EFQ99315.1| transcription termination factor 2 [Arthroderma gypseum CBS 118893]
          Length = 1164

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT----- 93
            Y       K +    +   E   + +   PI  ++   + S L  ++ A  + +      
Sbjct: 980  YEGPHTKTKALISRLLDTAEDNKKSSCQPPIKSVIFSAWTSHLDLIEVALEENKLTGFTR 1039

Query: 94   ------LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +   +I+ ++    + +L     + G GLNL   G+I+      ++     Q
Sbjct: 1040 LDGTMSLKQRNASIETFSTDDSVTILLVTIGAGGVGLNLT-AGSIVYIMEPQYNPAAIAQ 1098

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R+      + G KR V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1099 AVDRV-----HRIGQKREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1143


>gi|255551667|ref|XP_002516879.1| helicase, putative [Ricinus communis]
 gi|223543967|gb|EEF45493.1| helicase, putative [Ricinus communis]
          Length = 1064

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   +   
Sbjct: 427 QMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP- 98
                  +    +   K   + +++       L  L+              G T  +D  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 546

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 547 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 601 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 640


>gi|60544832|gb|AAX22754.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
          Length = 705

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 71  IIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPAS 118
           +++   +   L  +   F +             LD+    I+++++ K    +      +
Sbjct: 518 VLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRA 577

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----- 173
            G G+NL    +  + +   W+ +   Q ++R       + G  + V VY L        
Sbjct: 578 GGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-----HRIGQTKPVHVYRLSTAQSIEI 631

Query: 174 ---------------NTIDELVLQRLRTKSTIQDLLLN 196
                          NT +E +L  L+   T +D L+ 
Sbjct: 632 HLLSTKSPIDSLNQINTQEEDILALLKEDETAEDKLIQ 669


>gi|229824154|ref|ZP_04450223.1| hypothetical protein GCWU000282_01458 [Catonella morbi ATCC 51271]
 gi|229786508|gb|EEP22622.1| hypothetical protein GCWU000282_01458 [Catonella morbi ATCC 51271]
          Length = 398

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 32/205 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   ++         +    N           AN               ++K+  +E+
Sbjct: 216 KEYKTLRKTRVL----NDEAFDNIPKLIHGLRYWAN--------------QEDKLSYIEM 257

Query: 62  IIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTI---QEWNEGKIPLLFA 114
           +++  N   +I+ Y +  +  RL     K   Q   ++     +     W   K  +   
Sbjct: 258 LLQGTN-RNVIIFYQYKEEYERLHEIALKLGKQIYVVNGKASHLPPRDIWQSLKSSVTLV 316

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S   G+ LQY  + +VF++  +  ++++Q + R       + G  + V VY    Q+
Sbjct: 317 QYQSGSSGIELQY-ASEVVFYTPTYSYQDYEQSLGR-----AYRNGQTKKVTVYQFETQH 370

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           TI+  V + L  K      L    K
Sbjct: 371 TIESEVWEALANKKDFSTQLYAMTK 395


>gi|195157502|ref|XP_002019635.1| GL12501 [Drosophila persimilis]
 gi|194116226|gb|EDW38269.1| GL12501 [Drosophila persimilis]
          Length = 1502

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     + +N     +  L      + G G
Sbjct: 1123 YEFEGDVGEFKGCWTNGKDYFRLDGSCSVEQREAMCKTFNNVANLRARLFLISTRAGGLG 1182

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1183 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYE 1236

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1237 RQVAKQATAKRVID 1250


>gi|302771908|ref|XP_002969372.1| hypothetical protein SELMODRAFT_440815 [Selaginella moellendorffii]
 gi|300162848|gb|EFJ29460.1| hypothetical protein SELMODRAFT_440815 [Selaginella moellendorffii]
          Length = 1544

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPCTIQEWNEG--KIPLLFAH 115
              +++       L  L               G T        ++ +N    +       
Sbjct: 780 GHRVLIFSQMVKMLDILADYLRLRGFQFQRLDGSTKHHLRQQAMEHFNAPGSEDFCFLLS 839

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ +   Q + R       + G +  V +Y  +   +
Sbjct: 840 TRAGGLGINL-ATADTVIIFDSDWNPQNDLQAMSR-----AHRIGQEFVVNIYRFVTCRS 893

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           ++E +L+R + K  +  L++  L  +  
Sbjct: 894 VEEDILERAKKKMVLDHLVIQKLNAQGR 921


>gi|74151005|dbj|BAE27633.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 270 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 329

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 330 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 383

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 384 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 423


>gi|198455069|ref|XP_001359844.2| GA18248 [Drosophila pseudoobscura pseudoobscura]
 gi|198133079|gb|EAL28996.2| GA18248 [Drosophila pseudoobscura pseudoobscura]
          Length = 1506

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     + +N     +  L      + G G
Sbjct: 1127 YEFEGDVGEFKGCWTNGKDYFRLDGSCSVEQREAMCKTFNNVANLRARLFLISTRAGGLG 1186

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1187 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYE 1240

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1241 RQVAKQATAKRVID 1254


>gi|157126405|ref|XP_001654622.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108873308|gb|EAT37533.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 1374

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G +       I ++N+ K     +      + G G+NL  G N +V     W+  
Sbjct: 917  YRLDGGTSKSTRHEMINKFNDPKNRVTRVFLISTKAGGQGINL-VGANRVVILDTSWNPA 975

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              QQ I RI      + G ++  ++Y L+A +T++E V  R  TK  +   + +
Sbjct: 976  VDQQGIFRI-----YRLGQQKPCYIYRLLAIHTMEEKVYSRAVTKQAMSHRVAD 1024


>gi|297742194|emb|CBI33981.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 24/166 (14%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRT 93
             V  + + A     E  N   ++V   F   L  L                      R 
Sbjct: 342 IGVKTKFLMAFIRFSETMNEK-VLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRD 400

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + +   +I  +N+   ++ +L A   +C  G++L  G + ++   + W+       +ER 
Sbjct: 401 VKQRQSSINTFNDPASQVRVLLASTKACSEGISL-VGASRVILLDVVWNPS-----VERQ 454

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++R  + G ++ V++Y+L+   T++E    R   K  + +L+ ++
Sbjct: 455 AISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSELVFSS 500


>gi|218188229|gb|EEC70656.1| hypothetical protein OsI_01941 [Oryza sativa Indica Group]
          Length = 1259

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
           +      +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    +++V +   W+ +   Q        R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQADLQA-----QDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 682



 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +    +I+ +N+   +  +      + G G+NL    +++V +   W+ +   Q      
Sbjct: 846 EDRDASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQADLQA----- 899

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 900 QDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 943


>gi|195111562|ref|XP_002000347.1| GI10182 [Drosophila mojavensis]
 gi|193916941|gb|EDW15808.1| GI10182 [Drosophila mojavensis]
          Length = 1389

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 94   LDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +++     +++N     +  L      + G G+NL    N +V F + W+     Q I R
Sbjct: 1054 VEQRESMCKKFNNASNLRARLFLISTRAGGLGINL-VAANRVVIFDVSWNPSHDTQSIFR 1112

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      + G  +  ++Y LIA  T+++ V +R   K      +++
Sbjct: 1113 V-----YRFGQVKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVID 1153


>gi|67970134|dbj|BAE01411.1| unnamed protein product [Macaca fascicularis]
          Length = 889

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 714 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 773

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 774 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 827

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 828 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 864


>gi|17562600|ref|NP_504523.1| LEThal family member (let-418) [Caenorhabditis elegans]
 gi|3294508|gb|AAC25894.1| Lethal protein 418, confirmed by transcript evidence [Caenorhabditis
            elegans]
 gi|11095333|gb|AAG29838.1| LET-418 [Caenorhabditis elegans]
          Length = 1829

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT 93
            E      +  K   L+ ++ K       +++       L  +         +     G  
Sbjct: 917  EGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSI 976

Query: 94   LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            + +     I  +N    +  +      + G G+NL    + ++ +   W+     Q    
Sbjct: 977  MGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1032

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +R  + G K  V +Y  + + +++E +    + K  +  L++ A
Sbjct: 1033 --FSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRA 1077


>gi|738309|prf||1924378A nucler protein GRB1
          Length = 1613

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCT---- 100
               K + L+ I+   +A    +++     S +  ++     + F   R            
Sbjct: 1076 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYLAYRGFKYLRLAGTTKAEDRGM 1135

Query: 101  -IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1136 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1189

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1190 RIGQRNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1229


>gi|71297047|gb|AAH35183.1| C9orf102 protein [Homo sapiens]
 gi|119613042|gb|EAW92636.1| RAD26L hypothetical protein, isoform CRA_b [Homo sapiens]
          Length = 523

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 329 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 388

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R       + 
Sbjct: 389 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDR-----AYRI 442

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G  R V V  LI+  T++E++  R   K  + 
Sbjct: 443 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLH 474


>gi|297293038|ref|XP_002804187.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like isoform 3 [Macaca mulatta]
          Length = 891

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 716 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 775

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 776 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 829

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 830 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 866


>gi|189241668|ref|XP_967398.2| PREDICTED: similar to brahma CG5942-PA, partial [Tribolium castaneum]
          Length = 1402

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K       +++       +  ++              G T  +D   
Sbjct: 911  ASGKFELLDRILPKLKVTGHRVLLFCQMTQLMTIMEDYLSWRGFGYLRLDGTTKAEDRGD 970

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N       L      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 971  LLKKFNAKNSDYFLFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1024

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1025 RIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1064


>gi|323335419|gb|EGA76705.1| Uls1p [Saccharomyces cerevisiae Vin13]
          Length = 1619

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----KDPCTIQEW 104
            I+ ++ + +++    II+   F +    L+        FP  + +      +    I E+
Sbjct: 1449 IQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEF 1508

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1509 YRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC-----YRISQTK 1562

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1563 KVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1598


>gi|195477868|ref|XP_002086420.1| GE23128 [Drosophila yakuba]
 gi|194186210|gb|EDW99821.1| GE23128 [Drosophila yakuba]
          Length = 1634

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1147 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1200

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|54294007|ref|YP_126422.1| hypothetical protein lpl1068 [Legionella pneumophila str. Lens]
 gi|53753839|emb|CAH15305.1| hypothetical protein lpl1068 [Legionella pneumophila str. Lens]
          Length = 1128

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 33/182 (18%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF----NSD-----------LAR 83
           Y ++ ++       ++KA   I++K  A    +++   +      D           L R
Sbjct: 794 YINDNEYI--GGSARLKACFEILDKIYAKREKVLIFIEYNEWHRHDFLCQIIKTKYKLDR 851

Query: 84  LQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L  A             + ++ E  GK  ++   P + G G+ L    N ++  + WW+ 
Sbjct: 852 LPMAINGQINSKTRQHIVDKFQEERGKFDVMLLSPRAGGVGITLT-AANHIIHLTRWWNP 910

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE------LVLQRLRTKSTIQDLLL 195
               Q  +RI      + G +  V +YY +A +   E       + Q L  K  +   ++
Sbjct: 911 AVEDQANDRI-----YRIGQESDVHIYYPLAIHAEYENSCFDYNLHQLLEKKREVSQQVI 965

Query: 196 NA 197
            A
Sbjct: 966 IA 967


>gi|67523601|ref|XP_659860.1| hypothetical protein AN2256.2 [Aspergillus nidulans FGSC A4]
 gi|40744673|gb|EAA63829.1| hypothetical protein AN2256.2 [Aspergillus nidulans FGSC A4]
 gi|259487649|tpe|CBF86480.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_5G06590)
           [Aspergillus nidulans FGSC A4]
          Length = 972

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLA----RLQKAFPQGRTL 94
            D+     +    KI+AL  I+       A   ++   + S L      LQ A  Q   +
Sbjct: 788 TDDVSADPDNPSSKIEALIKILTAHGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQFARI 847

Query: 95  D-------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           D       +D    +   + K  +L A  + C  GLNL    N  +    WW      Q 
Sbjct: 848 DGKMTSIARDRSMRRFSTDPKCTVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQA 906

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++R+      + G  R   V+ L+ +++I++ VL     K  +
Sbjct: 907 VDRV-----YRLGQTRETTVWRLVMEDSIEDRVLAIQEQKRKL 944


>gi|195395382|ref|XP_002056315.1| GJ10883 [Drosophila virilis]
 gi|194143024|gb|EDW59427.1| GJ10883 [Drosophila virilis]
          Length = 1315

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 94   LDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +++     +++N     +  L      + G G+NL    N +V F + W+     Q I R
Sbjct: 981  VEQRESMCKKFNNASNLRARLFLISTRAGGLGINL-VAANRVVIFDVSWNPSHDTQSIFR 1039

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      + G  +  ++Y LIA  T+++ V +R   K      +++
Sbjct: 1040 V-----YRFGQVKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVID 1080


>gi|114595206|ref|XP_001163635.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform 1 [Pan troglodytes]
          Length = 891

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 716 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 775

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 776 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 829

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 830 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 866


>gi|14042443|dbj|BAB55248.1| unnamed protein product [Homo sapiens]
          Length = 521

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           MK    F+ E       + ++  N  S+  KC    +    +D       E         
Sbjct: 182 MKDLDAFENET-----AKKVKLQNILSQLRKC---VDHPYLFDGVEPEPFEVGDHLTEAS 233

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TI 101
            K+  L+ ++    +    +++       L   Q              G    ++    I
Sbjct: 234 GKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDIPQDYMDYRGYSYERVDGSVRGEERHLAI 293

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  I +      + G G+NL    + ++F    ++ +   Q   R       + G 
Sbjct: 294 KNFGQQPIFVFLLSTRAGGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQ 347

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 348 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 383


>gi|256273323|gb|EEU08262.1| Uls1p [Saccharomyces cerevisiae JAY291]
          Length = 1619

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----KDPCTIQEW 104
            I+ ++ + +++    II+   F +    L+        FP  + +      +    I E+
Sbjct: 1449 IQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEF 1508

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1509 YRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC-----YRISQTK 1562

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1563 KVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1598


>gi|6324765|ref|NP_014834.1| Uls1p [Saccharomyces cerevisiae S288c]
 gi|74676476|sp|Q08562|ULS1_YEAST RecName: Full=ATP-dependent helicase ULS1; AltName: Full=Role in
            silencing protein 1; AltName: Full=Ubiquitin ligase for
            SUMO conjugates protein 1
 gi|1420457|emb|CAA99400.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190407507|gb|EDV10774.1| SWI2/SNF2 DNA-dependent ATPase family member [Saccharomyces
            cerevisiae RM11-1a]
 gi|285815070|tpg|DAA10963.1| TPA: Uls1p [Saccharomyces cerevisiae S288c]
          Length = 1619

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----KDPCTIQEW 104
            I+ ++ + +++    II+   F +    L+        FP  + +      +    I E+
Sbjct: 1449 IQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEF 1508

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1509 YRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC-----YRISQTK 1562

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1563 KVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1598


>gi|297293040|ref|XP_002804188.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like isoform 4 [Macaca mulatta]
          Length = 889

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 714 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 773

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 774 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 827

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 828 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 864


>gi|194873165|ref|XP_001973152.1| GG13509 [Drosophila erecta]
 gi|190654935|gb|EDV52178.1| GG13509 [Drosophila erecta]
          Length = 1634

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1147 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1200

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|156544309|ref|XP_001607162.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 2220

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K  A    +++       +  ++              G T  +D   
Sbjct: 1721 ASGKFELLDRILPKLKATGHRVLLFCQMTQLMTIMEDYLQWRGFLYLRLDGTTKAEDRGD 1780

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N+   +  L      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1781 LLKKFNDPGSEFFLFILSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 1834

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1835 RIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1874


>gi|21112521|gb|AAM40750.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574424|gb|AAY49834.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 1065

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 42/218 (19%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKI----KA 58
            RE     +G +     + S   +  Q+    +   +++           H  K+    + 
Sbjct: 839  RETVDSGEGGD---TAALSLLHQLRQICANPLAAADDRSEFLSLDEHLRHSPKLAWLIEK 895

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------------QGRTLDKDPCTIQ 102
            L+ I  +A    +IV   F      +Q+A                  +    D     I 
Sbjct: 896  LQEI--QATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDSRQIIID 953

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +       ++     + G G+N+Q   N ++ F+  W+  +  Q  +R       + G 
Sbjct: 954  AFQAKPDFGVIVLSTTAVGFGVNIQ-AANHVIHFTRPWNPAKEDQATDR-----AYRIGQ 1007

Query: 162  KRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
            ++ VFVYY         + +E V +RL TK  + + +L
Sbjct: 1008 EKEVFVYYPTVLGDGFESFEERVAKRLATKRKLSNDML 1045


>gi|71659675|ref|XP_821558.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70886941|gb|EAN99707.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 983

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 18/156 (11%)

Query: 54  EKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
            K+ A+   I+       II+   F   L  +Q    +             L +    +Q
Sbjct: 815 SKLDAIAEYILSVPKDEKIIIFSQFGDMLELIQIWLQRASVKAVKLTGSLMLSQRQAVLQ 874

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + ++  +  +     + G GLNLQ   N ++    WW+     Q  +R       + G 
Sbjct: 875 AFLHDPGVRAILISLKAGGEGLNLQV-ANHVILVDPWWNPAVEMQAAQR-----AHRIGQ 928

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V V   + + +++E ++     K  + +  ++ 
Sbjct: 929 TKPVRVVRFVVERSVEERMMDLQDKKMLVIEGTIDG 964


>gi|151945478|gb|EDN63720.1| Member of the SWI/SNF family of DNA-dependent ATPases [Saccharomyces
            cerevisiae YJM789]
          Length = 1619

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----KDPCTIQEW 104
            I+ ++ + +++    II+   F +    L+        FP  + +      +    I E+
Sbjct: 1449 IQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEF 1508

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1509 YRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC-----YRISQTK 1562

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1563 KVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1598


>gi|74200625|dbj|BAE24713.1| unnamed protein product [Mus musculus]
          Length = 1261

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 877  ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 936

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 937  LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 990

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 991  RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1030


>gi|157012|gb|AAA19661.1| brahma protein [Drosophila melanogaster]
          Length = 1638

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1151 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1204

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1205 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|309361932|emb|CAP29254.2| CBR-LET-418 protein [Caenorhabditis briggsae AF16]
          Length = 1863

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
            E      +  K   L+ ++ K       +++       +  L         +     G  
Sbjct: 919  EGTALIKNSGKFVLLQKMLRKLKDTGHRVLIFSQMTMMMDILEDFCDVEGYKYERIDGSI 978

Query: 94   LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     I  +N    +  +      + G G+NL    + ++ +   W+     Q    
Sbjct: 979  TGQMRQDAIDRYNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1034

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +R  + G K  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1035 --FSRAHRLGQKHKVMIYRFVTKNSVEERITTVAKKKMLLNHLVVRA 1079


>gi|145479813|ref|XP_001425929.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393001|emb|CAK58531.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1299

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 31/221 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG---AVYY----DEEKHWKEVHD 53
           ++ Y K +     D +    +A N  +  +    + N      Y     +E+        
Sbjct: 666 LRNYEKLK---VLDQKKGASKA-NLLNILMSLRLVCNHPYLFTYKREFPNEDIEEMINQS 721

Query: 54  EKIKALEVIIEKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            K+K ++ II +       +++   F   L  +Q          +      ++      I
Sbjct: 722 NKLKFVDRIIPRLLEMQHKMLIFSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRII 781

Query: 102 QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N   GK  +      + G G+NL    + ++F    ++     Q I R       + 
Sbjct: 782 DSFNNSTGKSKIFLLSTRAGGLGINLT-SADTIIFTDSDFNPYRDLQAISR-----AHRM 835

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G    V V+ L+++ T +E ++Q    K  ++++++N + K
Sbjct: 836 GQTNKVKVFRLVSKYTAEERIIQIATKKLLLEEIIINPINK 876


>gi|56474875|gb|AAV91782.1| Brg1 [Xenopus laevis]
          Length = 1600

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 24/177 (13%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR 92
               G V   +          K + L+ I+   +A    +++     + +  ++  F    
Sbjct: 1050 FTGGIVQGQD----VYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRG 1105

Query: 93   TL----------DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        D     ++ +NE   +  +      + G GLNLQ   + +V F   W+
Sbjct: 1106 FKYLRLDGTTKADDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVVIFDSDWN 1164

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  Q        R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1165 PHQDLQA-----QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1216


>gi|195327907|ref|XP_002030658.1| GM24456 [Drosophila sechellia]
 gi|194119601|gb|EDW41644.1| GM24456 [Drosophila sechellia]
          Length = 1638

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1151 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1204

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1205 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|17985967|ref|NP_536746.1| brahma, isoform A [Drosophila melanogaster]
 gi|24664914|ref|NP_730089.1| brahma, isoform B [Drosophila melanogaster]
 gi|19857556|sp|P25439|BRM_DROME RecName: Full=ATP-dependent helicase brm; AltName: Full=Homeotic gene
            regulator; AltName: Full=Protein brahma
 gi|7294205|gb|AAF49557.1| brahma, isoform B [Drosophila melanogaster]
 gi|20152033|gb|AAM11376.1| LD36356p [Drosophila melanogaster]
 gi|23093402|gb|AAF49558.3| brahma, isoform A [Drosophila melanogaster]
          Length = 1638

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1151 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1204

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1205 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|254580745|ref|XP_002496358.1| ZYRO0C16544p [Zygosaccharomyces rouxii]
 gi|238939249|emb|CAR27425.1| ZYRO0C16544p [Zygosaccharomyces rouxii]
          Length = 759

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 23/169 (13%)

Query: 43  DEEKHWKEVHDEKIKAL-EVIIEKANAA---PIIVAYHFNSDLARLQKAFPQG------- 91
           + +  WK     KI+AL E +    +       IV   F S L  +     +        
Sbjct: 579 NMQGTWK--SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLIDWRLKRAGFETVKL 636

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D          +  +      + G  LNL     + +    WW+     Q 
Sbjct: 637 QGSMSPTQRDETIKYFMKNIRCEVFLVSLKAGGVALNLCEASQVFIM-DPWWNPSVEWQS 695

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 696 GDRV-----HRIGQYRPVKITRFCIEDSIESRIIELQEKKANMIHATIN 739


>gi|268557732|ref|XP_002636856.1| C. briggsae CBR-LET-418 protein [Caenorhabditis briggsae]
          Length = 1849

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT 93
            E      +  K   L+ ++ K       +++       +  L         +     G  
Sbjct: 914  EGTALIKNSGKFVLLQKMLRKLKDTGHRVLIFSQMTMMMDILEDFCDVEGYKYERIDGSI 973

Query: 94   LDKDPCT-IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     I  +N    +  +      + G G+NL    + ++ +   W+     Q    
Sbjct: 974  TGQMRQDAIDRYNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1029

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +R  + G K  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1030 --FSRAHRLGQKHKVMIYRFVTKNSVEERITTVAKKKMLLNHLVVRA 1074


>gi|329929408|ref|ZP_08283156.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328936495|gb|EGG32940.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 610

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I++ N   +IV   + +    L   F        P    +++     + 
Sbjct: 400 ANTKAEKAIELIQQMNEK-VIVFTEYRATQEYLLNYFRDHGLISVPYRGGMNRGKKDWMM 458

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   GK  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 459 DLFRGKAQVMIA-TEAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 511

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V +Y L    TI+E +L  L  K  + ++++  L
Sbjct: 512 NDVKIYNLSTSGTIEEHILNLLHEKINMFEMVIGGL 547


>gi|312198809|ref|YP_004018870.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311230145|gb|ADP83000.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 769

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDK 96
           H  K+  L  I  +A  N   ++V   F   L  + +                     ++
Sbjct: 577 HSAKLDRLVDIAREAGQNGQRVVVFSFFLEVLDIVGRRLRADPECGAVFGPITGAVAAEE 636

Query: 97  DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++     P +L +   + G GLN+Q   ++++           +Q I R+    
Sbjct: 637 RQQLVDDFGRRPAPAVLLSQIVAGGTGLNMQ-AASVVILCEPQVKPTLEEQAIARL---- 691

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G  R V V+ L+  +++D+ +++ L  K    D 
Sbjct: 692 -HRMGQIRTVQVHRLLTTDSVDQRLVEILAAKRVEFDA 728


>gi|195445442|ref|XP_002070326.1| GK12000 [Drosophila willistoni]
 gi|194166411|gb|EDW81312.1| GK12000 [Drosophila willistoni]
          Length = 1352

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 94   LDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +++     +++N     K  L      + G G+NL    N +V F + W+     Q I R
Sbjct: 1005 VEQREAMCKKFNNAANLKARLFLISTRAGGLGINL-VAANRVVIFDVSWNPSHDTQSIFR 1063

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      + G  +  ++Y LIA  T+++ V +R   K      +++
Sbjct: 1064 V-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKLATAKRVID 1104


>gi|242006444|ref|XP_002424060.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507366|gb|EEB11322.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1457

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +     ++ +N       L      + G GLNLQ   + ++ F   W+  + 
Sbjct: 1017 RLDGATKSEDRGELLRRFNSKDSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQD 1075

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q        R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1076 LQA-----QDRAHRIGQQNEVRVLRLLTVNSVEERILAAARYKLNMDEKVIQA 1123


>gi|195504329|ref|XP_002099032.1| GE10693 [Drosophila yakuba]
 gi|194185133|gb|EDW98744.1| GE10693 [Drosophila yakuba]
          Length = 1312

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 945  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLG 1004

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1005 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1058

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1059 RQVAKQATAKRVID 1072


>gi|194874444|ref|XP_001973399.1| GG13364 [Drosophila erecta]
 gi|190655182|gb|EDV52425.1| GG13364 [Drosophila erecta]
          Length = 880

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 18/138 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLL 112
           K+    +++       L  L+          +    G T       I  +N    +  + 
Sbjct: 6   KSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVF 65

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+     Q       +R  + G    V +Y  + 
Sbjct: 66  LLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRAHRIGQANKVMIYRFVT 119

Query: 173 QNTIDELVLQRLRTKSTI 190
           +N+++E V Q  + K  +
Sbjct: 120 RNSVEERVTQVAKRKMML 137


>gi|189197045|ref|XP_001934860.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187980808|gb|EDU47434.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1022

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
              I+ L  I E       ++   F S L  ++          + +     +D     + 
Sbjct: 849 SRTIELLNEIRENDPTEKTLIFSQFTSLLDLVEVPLWREGIKYQRYDGSMKMDDRAEAVN 908

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +     ++     +   GLNL     +++    +W+    +Q ++R       +   
Sbjct: 909 LFMDNPNQNVMLVSIKAGNAGLNLWKASQVIIL-DPFWNPFIEEQAVDR-----AHRMPQ 962

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R V V+ ++   T+++ ++     K  I
Sbjct: 963 TREVHVHRILVPETVEDRIVLLQDKKREI 991


>gi|24664907|ref|NP_730088.1| brahma, isoform D [Drosophila melanogaster]
 gi|28574896|ref|NP_536745.4| brahma, isoform C [Drosophila melanogaster]
 gi|23093400|gb|AAN11773.1| brahma, isoform C [Drosophila melanogaster]
 gi|23093401|gb|AAN11774.1| brahma, isoform D [Drosophila melanogaster]
 gi|33589348|gb|AAQ22441.1| RE61274p [Drosophila melanogaster]
          Length = 1634

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1147 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1200

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|323450080|gb|EGB05963.1| hypothetical protein AURANDRAFT_1051 [Aureococcus anophagefferens]
          Length = 531

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 53  DEKIKALEVIIEKANA----APIIVAYHFNSDLARLQK---------AFPQGRTLDKDPC 99
             K+  L  ++ +         ++V  +  S L  + +             G+T  K   
Sbjct: 343 SGKLHVLYRLLRELRGNGGQERVVVVANQTSSLELVSRLCSREGWPWCMLDGKTPLKQRK 402

Query: 100 TIQE-WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            + + +N+              + G GLNL  GG+ LV F   W+    +Q   R     
Sbjct: 403 LLNDEFNDPACEHHFCFLLSSTAGGCGLNL-IGGSRLVLFDSSWNPATDKQAAARCW--- 458

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             + G  R  + Y L+   TI+E + QR   K  + 
Sbjct: 459 --RDGNPRRCYTYRLLTAGTIEEKIYQRQLAKEGLA 492


>gi|240274021|gb|EER37539.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           H143]
          Length = 294

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFP-----------QGRTLD 95
           E    KI+AL  I+     AP    +V   + S L  ++               +  +  
Sbjct: 118 ETTSSKIQALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARIDGKMSSAK 177

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    +L A    C  GLNL    N ++    WW      Q ++R+    
Sbjct: 178 RDAAMNALSNDSNCTVLLASLNVCSVGLNL-VAANQVILADSWWAPAIEDQAVDRV---- 232

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G KR   ++ L+ +N+I++ VL + + K T+
Sbjct: 233 -YRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTL 266


>gi|83315696|ref|XP_730904.1| DNA repair protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490775|gb|EAA22469.1| DNA repair protein-like-related [Plasmodium yoelii yoelii]
          Length = 1412

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
            K    V+  K++ L   I++   N   ++V   +   L  ++K           +    T
Sbjct: 1203 KKDNFVYSTKLRILFDHIKEDIKNELHVVVFSQWIGFLKIIEKLLTLHEIPNKIYDGSLT 1262

Query: 94   LDKDPCTIQEWN--EGKI---------------------PLLFAHPASCGHGLNLQYGGN 130
             ++   T+  +N  +GKI                      +L     + G GLNL    +
Sbjct: 1263 FEQRKNTLYWFNIQKGKIYQPGIGFCQSTCDIPIENKSGKVLLCSLKAGGVGLNLTVS-S 1321

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +    LWW+     Q  ERI      + G  + V +Y  + + T++E +LQ  ++K   
Sbjct: 1322 KVYLMDLWWNPAIEDQAFERI-----HRIGQLKDVNIYKFVLEKTVEERILQIHQSKQYT 1376

Query: 191  QDLLLNAL 198
             +  L  +
Sbjct: 1377 ANQCLAQV 1384


>gi|31745178|ref|NP_853634.1| transcription activator BRG1 [Danio rerio]
 gi|30385206|gb|AAP22968.1| brahma protein-like protein 1 [Danio rerio]
 gi|30385209|gb|AAP22969.1| brahma protein-like protein 1 [Danio rerio]
 gi|190340088|gb|AAI63918.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Danio rerio]
 gi|190340090|gb|AAI63920.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Danio rerio]
          Length = 1627

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     + +  ++  F           G T  +D   
Sbjct: 1090 ASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGM 1149

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +N+   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1150 LLKNFNDPSHQYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1203

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1204 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1243


>gi|253744877|gb|EET01014.1| Transcription regulatory protein SNF2 [Giardia intestinalis ATCC
            50581]
          Length = 2074

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN-------SDLARLQKAFP--QGRTLDKDP-CT 100
              K++ L+ I+ K +     +++   F        S L   Q  F    G   D D    
Sbjct: 1101 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRQYKFVRFDGSVKDVDRNTM 1160

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N+      +      +  HGLNLQ   + ++ F   ++    QQ  +R       +
Sbjct: 1161 IRGYNKEDSKDFIFLLSTRAASHGLNLQT-ADTVIIFDCDYNGTYDQQAQDRC-----YR 1214

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1215 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1253


>gi|308161598|gb|EFO64037.1| Transcription regulatory protein SNF2 [Giardia lamblia P15]
          Length = 2076

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN-------SDLARLQKAFP--QGRTLDKDP-CT 100
              K++ L+ I+ K +     +++   F        S L   +  F    G   D D    
Sbjct: 1090 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRRYNFVRFDGSVKDVDRNSM 1149

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N+      +      +  HGLNLQ   + ++ F   ++    QQ  +R       +
Sbjct: 1150 IRGYNKEDSKDFVFLLSTRAASHGLNLQT-ADTVIIFDCDYNGTYDQQAQDRC-----YR 1203

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1204 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1242


>gi|194749805|ref|XP_001957327.1| GF10366 [Drosophila ananassae]
 gi|190624609|gb|EDV40133.1| GF10366 [Drosophila ananassae]
          Length = 1635

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI 101
              K + L+ I+ K  A    +++       +  ++              G T  +D   +
Sbjct: 1093 SGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGDL 1152

Query: 102  -QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +++N       +      + G GLNLQ   + +V F   W+  +  Q        R  +
Sbjct: 1153 LRKFNAKDSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAHR 1206

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1207 IGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|115438138|ref|XP_001217989.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188804|gb|EAU30504.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 948

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 24/165 (14%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKD 97
              KI+AL  I+     A     +V   + S L  L+    +              + +D
Sbjct: 774 PSSKIEALVKILTAQGQAPGTKTVVFSQWTSFLNLLEPHLHRVGIGFARIDGKMNSVARD 833

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +   + +  +L A  + C  GLNL    N  +    WW      Q ++R+      
Sbjct: 834 NSTYRFSRDPQCTVLLASLSVCSVGLNL-VAANQAILADSWWAPAIEDQAVDRV-----Y 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G KR   V+ L+ +++I++ VL     K      L++A  +ET
Sbjct: 888 RLGQKRETTVWRLVMEDSIEDRVLAIQDVKR----QLMSAAFRET 928


>gi|157823928|ref|NP_001099948.1| helicase-like transcription factor [Rattus norvegicus]
 gi|149048534|gb|EDM01075.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 (predicted) [Rattus
           norvegicus]
          Length = 974

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 23/181 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEV-IIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL 94
           A   D +   +     KI AL   +IE     P    +V   F + L+ ++        +
Sbjct: 783 ACDSDNKSDMEWTSSSKINALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFV 842

Query: 95  ----------DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 843 FTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSLKAGGVGLNL-CAASRVFLMDPAWNP 901

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q  +R       + G K+ V +   I +++++E +L+    K  +        K +
Sbjct: 902 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNMKRELAAGAFGTKKTD 956

Query: 202 T 202
            
Sbjct: 957 A 957


>gi|322706469|gb|EFY98049.1| DNA repair protein RAD16 [Metarhizium anisopliae ARSEF 23]
          Length = 1086

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
            L  +     +   I+   F + L     RL++A      LD      Q         N  
Sbjct: 923  LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFMNNV 982

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 983  DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 1036

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ +    +NA
Sbjct: 1037 TRLCIEDSVESRMVLIQEKKTNMIHSTVNA 1066


>gi|195155527|ref|XP_002018655.1| GL25835 [Drosophila persimilis]
 gi|194114808|gb|EDW36851.1| GL25835 [Drosophila persimilis]
          Length = 1332

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEG--KIPLL 112
           KAN   +++       L  L+              GR   +     I  +++      + 
Sbjct: 12  KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 71

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+ +   Q   R       + G ++ V +Y L+ 
Sbjct: 72  LLCTKAGGLGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQRKMVKIYRLLC 125

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +NT +  +  +   K  +   +L ++  + 
Sbjct: 126 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 155


>gi|74209142|dbj|BAE24963.1| unnamed protein product [Mus musculus]
          Length = 1733

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAILQDINRKG 937


>gi|46123053|ref|XP_386080.1| hypothetical protein FG05904.1 [Gibberella zeae PH-1]
 gi|116090833|gb|ABJ55998.1| RING-11 protein [Gibberella zeae]
          Length = 1063

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
            L  +     +   I+   F + L     RL++A      LD      Q         N  
Sbjct: 900  LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFMNNV 959

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 960  DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 1013

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ +    +NA
Sbjct: 1014 TRLCIEDSVESRMVLIQEKKTNMIHSTVNA 1043


>gi|332007781|gb|AED95164.1| chromatin remodeling 4 protein [Arabidopsis thaliana]
          Length = 2223

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +       +   
Sbjct: 1002 ASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADR 1061

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      +CG G+NL    + ++ +   ++     Q + R      
Sbjct: 1062 QAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1115

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1116 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|322696102|gb|EFY87899.1| DNA repair protein RAD16 [Metarhizium acridum CQMa 102]
          Length = 1097

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD------KDPCTIQEW-NEG 107
            L  +     +   I+   F + L     RL++A      LD      +   +I+ + N  
Sbjct: 934  LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPSQRQASIEHFMNNV 993

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 994  DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 1047

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ +    +NA
Sbjct: 1048 TRLCIEDSVESRMVLIQEKKTNMIHSTVNA 1077


>gi|189198105|ref|XP_001935390.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981338|gb|EDU47964.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1116

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 31/173 (17%)

Query: 51   VHDEKIKALEVIIEK--------ANAAPI--IVAYHFNSDLARLQKAFPQG--------- 91
                K KAL   +E+         +  PI  IV   + + L  ++ A             
Sbjct: 934  GPHTKTKALLDDLEEFRNWSDQHPDERPIKSIVFSSWTTHLDLIEIALKNAGHTLVRLDG 993

Query: 92   ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   DK    ++E  +  I ++     + G GLNL    N +      ++     Q 
Sbjct: 994  RMTRENRDKSMQALRE--DPSIRVMLVSIGAGGLGLNLTT-ANKVFMMEPQFNPAAEAQA 1050

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++R+      + G  R V +   I + + +E +L+    K  + D+ ++  +K
Sbjct: 1051 VDRV-----HRLGQDREVTIKRFIMEGSFEEKMLELQNKKRDLADMTMSKERK 1098


>gi|145358870|ref|NP_199293.2| CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding / protein
            binding / zinc ion binding [Arabidopsis thaliana]
          Length = 2242

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +       +   
Sbjct: 1002 ASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADR 1061

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      +CG G+NL    + ++ +   ++     Q + R      
Sbjct: 1062 QAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1115

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1116 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|2660669|gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis thaliana]
 gi|9758384|dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana]
          Length = 2228

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +       +   
Sbjct: 988  ASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADR 1047

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      +CG G+NL    + ++ +   ++     Q + R      
Sbjct: 1048 QAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1101

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1102 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1141


>gi|302307173|ref|NP_983750.2| ADL345Cp [Ashbya gossypii ATCC 10895]
 gi|299788872|gb|AAS51574.2| ADL345Cp [Ashbya gossypii ATCC 10895]
          Length = 746

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 45  EKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR-------- 92
           + +W+     KI+AL      +         IV   F S L  ++    +          
Sbjct: 568 QGNWR--SSTKIEALLEELYNLRSSTRTIKSIVFSQFTSMLDLVEWRLKRAGFQTAKLQG 625

Query: 93  --TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +   TI  + +     +      + G  LNL     + +    WW+     Q  +
Sbjct: 626 SMTPTQRAETINYFMDNVHCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQSGD 684

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           R+      + G  R V +     +++I+  +++    K+ +
Sbjct: 685 RV-----HRIGQHRPVKITRFCIEDSIESRIIELQEKKANM 720


>gi|17862980|gb|AAL39967.1| SD07188p [Drosophila melanogaster]
          Length = 655

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75  YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNE---GKIPLLFAHPASCGHG 122
           Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 288 YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLG 347

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 348 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 401

Query: 183 RLRTKSTIQDLLLN 196
           R   K      +++
Sbjct: 402 RQVAKQATAKRVID 415


>gi|12224998|emb|CAC21685.1| hypothetical protein [Homo sapiens]
          Length = 375

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 200 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 259

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 260 HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 313

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 314 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 350


>gi|317037064|ref|XP_001398334.2| hypothetical protein ANI_1_444154 [Aspergillus niger CBS 513.88]
          Length = 858

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 20/158 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPC 99
             + + L  II ++      ++V  H    L  ++    +              +     
Sbjct: 452 SCRAEILNRIIAESVRAGDKVLVFSHSIPTLNYVENDILKAFGWKYCRLDGSTPMASRQA 511

Query: 100 TIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +++N+G    +      + G GLN+ +G N ++ F   ++    +Q + R       +
Sbjct: 512 ATKQFNQGSAEDVYLISTRAGGLGLNI-FGANRVIIFDFTFNPVWEEQAVGR-----AYR 565

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+ VFVY  IA  T +E++  +   K+ +   +++
Sbjct: 566 LGQKKPVFVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD 603


>gi|207341053|gb|EDZ69217.1| YOR191Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1205

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----KDPCTIQEW 104
            I+ ++ + +++    II+   F +    L+        FP  + +      +    I E+
Sbjct: 1035 IQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEF 1094

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1095 YRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC-----YRISQTK 1148

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1149 KVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1184


>gi|301606634|ref|XP_002932929.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like
           [Xenopus (Silurana) tropicalis]
          Length = 2522

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWNEGKIP--LLFAH 115
           LE   +      +   Y     L         GR   +     I  + +      +    
Sbjct: 650 LEEFGDLKTEEQVRKFYWLFDFLWIYIYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLC 709

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +N+
Sbjct: 710 TRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITRNS 763

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
            +  +  +   K  +   +L  + ++ 
Sbjct: 764 YEREMFDKASLKLGLDKAVLQDINRKG 790


>gi|302422820|ref|XP_003009240.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
 gi|261352386|gb|EEY14814.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
          Length = 924

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 43  DEEKHWKEVH--DEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTLDKD 97
           D++ +  +      K +AL  I++     P   +++   + S L  +Q    +       
Sbjct: 754 DDDANAFDGDFKSSKTEALLKIVQATCKDPQSKVVIFSQWTSFLNIIQTQIEEAGLKWTR 813

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                + ++    +      +   GLNL    + ++    WW      Q ++R+      
Sbjct: 814 IDGSMKPDKRDAAI------AALVGLNL-VAADTVILADSWWAPAIEDQAVDRV-----H 861

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G KR   V+ L+ +NTI+E VL+    K  +
Sbjct: 862 RLGQKRPTTVWRLVMENTIEEQVLEIQAAKRQL 894


>gi|225562673|gb|EEH10952.1| CHR9/SNF2/SWI2 [Ajellomyces capsulatus G186AR]
          Length = 1032

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG-KIPLLFA 114
            N   ++V  H    L  LQ  F              + +     +  +N   +  +   
Sbjct: 629 GNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGAMSYEDRAKVVDHFNADIREFVFLI 688

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  
Sbjct: 689 STRAGGVGLNIT-SANKVVVVDPNWNPAYDLQA-----QDRAYRIGQARDVEVFRLVSAG 742

Query: 175 TIDELVLQRLRTKSTIQD 192
           TI+E+V  R   K    +
Sbjct: 743 TIEEIVYARQIYKQQQAN 760


>gi|297826111|ref|XP_002880938.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297326777|gb|EFH57197.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 3451

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1070 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1129

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1130 GFNKSGSPYFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1183

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1184 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1220


>gi|30683833|ref|NP_850117.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253005|gb|AEC08099.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3529

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1188 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|10434055|dbj|BAB14112.1| unnamed protein product [Homo sapiens]
          Length = 730

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 309 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 368

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 369 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 422

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 423 RNSYEREMFDRASLKLGLDKAVLQSM 448


>gi|326468582|gb|EGD92591.1| hypothetical protein TESG_00164 [Trichophyton tonsurans CBS 112818]
          Length = 1811

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  II+++      I++   +   L+ L         +     G+T +     
Sbjct: 1283 NSHRTQMVGQIIDESIKAGDKILIFSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQA 1342

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +  + +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1343 ATRDFRDSDVHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1396

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  I   T +EL+ ++   K  +    ++
Sbjct: 1397 GQTKDVFVYRFIMGGTFEELIHEKGVFKKNMALRAID 1433


>gi|219128668|ref|XP_002184529.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403979|gb|EEC43928.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 479

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF---------NSDLARLQKAF 88
           +  +           K+  +E +++K       ++V                L R +   
Sbjct: 312 ILNEAAAKQLVKSSGKMVLMEKLLQKLFDGGHKVLVFSQMVRVLDLLEELLKLKRYKYER 371

Query: 89  PQGRTLDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             G T        +  +N       ++     + G GLNL    +I++ F   W+ +   
Sbjct: 372 LDGSTTSSARLSAVDRFNRKSCQRFVMLLSTRAGGLGLNLT-AADIVIIFDSDWNPQNDL 430

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q + R       + G  RAV VY L+   T +  +      K  ++  +L+
Sbjct: 431 QAMAR-----AHRIGQTRAVRVYRLLTAKTYEMHMFHSASLKLGLERAVLS 476


>gi|172041028|ref|YP_001800742.1| hypothetical protein cur_1348 [Corynebacterium urealyticum DSM
           7109]
 gi|171852332|emb|CAQ05308.1| hypothetical protein cu1348 [Corynebacterium urealyticum DSM 7109]
          Length = 343

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 25/196 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII-EKA 66
           + E + +      E +N A +    +Q+                   K++    ++ +  
Sbjct: 119 ETEEWIEAFEAEREKYNEAVEAGNFMQMRQSFSGPG---------SAKMERFAELLTDGL 169

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKI-PLLFAHPA 117
           +    IV  +F   L  L  +           G +  +    + ++   +   +L A   
Sbjct: 170 DDDKTIVFTYFRGVLDHLMDSLGDRAFGPIAGGVSHQERQQAVDDFTAAEPGAVLVAQIN 229

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLN+Q   N +V      +     Q I R       + G    V V+ L+  ++++
Sbjct: 230 AAGEGLNIQ-AANHVVLIEPQLNPAVEAQAIAR-----AHRMGQINPVEVHRLLTPDSVE 283

Query: 178 ELVLQRLRTKSTIQDL 193
           E +   L TK  + D 
Sbjct: 284 ERLHLLLATKRELFDS 299


>gi|255561985|ref|XP_002522001.1| conserved hypothetical protein [Ricinus communis]
 gi|223538805|gb|EEF40405.1| conserved hypothetical protein [Ricinus communis]
          Length = 1447

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 36/188 (19%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA-------RLQKAFPQGRTL 94
            E  + +  +  K+  L  I+  ++      +V       L        RL +   +G+  
Sbjct: 1056 ENNYKELDYSGKMVLLLDILTASSHVGDKALVFSQSIPTLDLIELYLSRLSRHGKKGKLW 1115

Query: 95   DK---------------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFS 136
             K                   ++++N+ +   +        +   G+NL +  N +V   
Sbjct: 1116 RKGKDWYRLDGRTESSERQRLVEKFNDPENKRVKCTLISTRAGSLGINL-HAANRVVIVD 1174

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+     Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++
Sbjct: 1175 GSWNPTYDLQAI-----FRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1229

Query: 197  ALKKETIH 204
               ++ +H
Sbjct: 1230 ---RQQVH 1234


>gi|312086053|ref|XP_003144925.1| hypothetical protein LOAG_09349 [Loa loa]
 gi|307759908|gb|EFO19142.1| hypothetical protein LOAG_09349 [Loa loa]
          Length = 223

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             A+ G GLNL  G + ++ F   W+     Q++ RI      + G K    +Y LI   
Sbjct: 2   SSATGGLGLNL-VGASRMILFDSDWNPAVDMQVMARIW-----RQGQKSPCHIYRLITGG 55

Query: 175 TIDELVLQRLRTKSTI 190
           T+DE +LQR   KS++
Sbjct: 56  TVDEKILQRQIKKSSL 71


>gi|307214999|gb|EFN89841.1| ATP-dependent helicase brm [Harpegnathos saltator]
          Length = 1322

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 85  QKAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G T  +D   + +++N+   +  L      + G GLNLQ   + ++ F   W+ 
Sbjct: 870 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNP 928

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q        R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 929 HQDLQA-----QDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 979


>gi|315042548|ref|XP_003170650.1| helicase swr1 [Arthroderma gypseum CBS 118893]
 gi|311344439|gb|EFR03642.1| helicase swr1 [Arthroderma gypseum CBS 118893]
          Length = 648

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRT 93
            K W  ++  K++ L  +++K  A    I+V   F   +  L++             G+T
Sbjct: 455 NKEW--MNSGKVEKLCELLDKYIAEGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKT 512

Query: 94  LDKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +D  +I   ++E   I +      + G G+NL    N ++ F   ++ +E  Q     
Sbjct: 513 SVEDRQSILDAFHEQVDISVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQEDIQA---- 567

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 568 -ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 609


>gi|196012568|ref|XP_002116146.1| hypothetical protein TRIADDRAFT_30634 [Trichoplax adhaerens]
 gi|190581101|gb|EDV21179.1| hypothetical protein TRIADDRAFT_30634 [Trichoplax adhaerens]
          Length = 701

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 29/190 (15%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIKALEVIIEKANAAP 70
             +   N+A      +Q +   V  D       +  H   +  + ++ L  I+E      
Sbjct: 279 NQVNGINAA--IHAMIQASGKLVLIDKLLPKLKDGGHKVLIFSQMVRCL-DILE---DYL 332

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYG 128
           +   Y +     R++    Q          I  +   E    +      + G G+NL   
Sbjct: 333 VYRRYQYERIDGRVRGNLRQA--------AIDRFCKPESDRFVFLLCTRAGGLGINLT-A 383

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +V F   W+ +   Q   R       + G  +AV VY LI QN+ +  +  R   K 
Sbjct: 384 ADTVVIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITQNSYEREMFDRASLKL 438

Query: 189 TIQDLLLNAL 198
            +   +L ++
Sbjct: 439 GLDRAVLQSM 448


>gi|148744739|gb|AAI42882.1| Smarca5 protein [Danio rerio]
          Length = 534

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 86  KAFPQGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G+T  ++   +I  +NE      L      + G G+NL    ++++ +   W+ +
Sbjct: 8   YCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ 66

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q ++R       + G K+ V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 67  VDLQAMDR-----AHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 115


>gi|77747807|ref|NP_636826.2| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|77761256|ref|YP_243854.2| helicase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 641

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 42/218 (19%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKI----KA 58
           RE     +G +     + S   +  Q+    +   +++           H  K+    + 
Sbjct: 415 RETVDSGEGGD---TAALSLLHQLRQICANPLAAADDRSEFLSLDEHLRHSPKLAWLIEK 471

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------------QGRTLDKDPCTIQ 102
           L+ I  +A    +IV   F      +Q+A                  +    D     I 
Sbjct: 472 LQEI--QATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDSRQIIID 529

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +       ++     + G G+N+Q   N ++ F+  W+  +  Q  +R       + G 
Sbjct: 530 AFQAKPDFGVIVLSTTAVGFGVNIQ-AANHVIHFTRPWNPAKEDQATDR-----AYRIGQ 583

Query: 162 KRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           ++ VFVYY         + +E V +RL TK  + + +L
Sbjct: 584 EKEVFVYYPTVLGDGFESFEERVAKRLATKRKLSNDML 621


>gi|194756856|ref|XP_001960686.1| GF13478 [Drosophila ananassae]
 gi|190621984|gb|EDV37508.1| GF13478 [Drosophila ananassae]
          Length = 1575

 Score = 83.1 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLN 124
            +N+  + + +    +   L        +  +    + E+N    + L      +   G+N
Sbjct: 898  SNSPKMEIFFCILKESMHLGDRLDGSTSSQERERLVNEFNANTSVKLFLISTRAGSLGIN 957

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G N ++ F   W+     Q + RI      + G  +  FVY ++    +++ +  R 
Sbjct: 958  LT-GANRVIIFDASWNPCHDTQAVYRI-----YRYGQTKPCFVYRIVMDKCLEKKIYDRQ 1011

Query: 185  RTKSTIQDLLLN 196
              K  + D +++
Sbjct: 1012 IKKQGMSDRIVD 1023


>gi|170092931|ref|XP_001877687.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
           bicolor S238N-H82]
 gi|164647546|gb|EDR11790.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
           bicolor S238N-H82]
          Length = 1051

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 35/169 (20%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----IQEWN 105
           +  L  II        ++  H+ S L  L     +K +   R   + P       +  +N
Sbjct: 726 LAKLLTIIRHTTEEKCVLVSHYTSTLNILEAFCQKKGYSYYRLDGQTPQVKRQEYVNAFN 785

Query: 106 E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL----------------EEHQQ 146
                   +      + G G+NL  G + L      W+                     Q
Sbjct: 786 NVSQRSSFIFLLSSKAGGLGINL-IGASRLCLIDSDWNPRLVGRRTQLTPTLISDSHDLQ 844

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R       + G KR VF+Y  +    IDE + QR  TK  +   L+
Sbjct: 845 SMARC-----HRDGQKRPVFIYRFLTTGAIDEKIYQRQVTKLGLSASLI 888


>gi|145329971|ref|NP_001077971.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253007|gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3543

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1188 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|60499608|gb|AAX22009.1| SPLAYED splice variant [Arabidopsis thaliana]
          Length = 3543

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1188 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|159120058|ref|XP_001710245.1| Transcription regulatory protein SNF2 [Giardia lamblia ATCC 50803]
 gi|157438363|gb|EDO82571.1| Transcription regulatory protein SNF2 [Giardia lamblia ATCC 50803]
          Length = 2079

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN-------SDLARLQKAFP--QGRTLDKDP-CT 100
              K++ L+ I+ K +     +++   F        S L   Q  F    G   D D    
Sbjct: 1094 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRQYKFVRFDGSVKDVDRNSM 1153

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N  + K  +      +  HGLNLQ   + ++ F   ++    QQ  +R       +
Sbjct: 1154 IRGYNREDSKDFVFLLSTRAASHGLNLQT-ADTVIIFDCDYNGTYDQQAQDRC-----YR 1207

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1208 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1246


>gi|198434690|ref|XP_002126745.1| PREDICTED: similar to DNA excision repair protein ERCC-6-like
           (ATP-dependent helicase ERCC6-like) (PLK1-interacting
           checkpoint helicase) (Tumor antigen BJ-HCC-15) [Ciona
           intestinalis]
          Length = 1159

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----AFPQGR------TLDKDPC 99
             K++ L  ++ +        ++       L  +Q+      F   R       L +   
Sbjct: 471 SGKLQFLIPLLLRLREEGHRTLIFSMSRKMLNIIQRILMNLKFKVMRMDGLVTKLSEREK 530

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ + E     +        G GL L    + +V +   W+     Q ++RI      +
Sbjct: 531 RVKLFQEDSSYSVFLLTTQVGGVGLTLT-AADRVVIYDPSWNPATDSQAVDRI-----YR 584

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K++V VY LI   +++E + +R   K+++
Sbjct: 585 IGQKKSVAVYRLITCGSVEEKIYRRQIFKNSV 616


>gi|193786196|dbj|BAG51479.1| unnamed protein product [Homo sapiens]
          Length = 737

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 201 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 260

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 261 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 314

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 315 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 354


>gi|261408341|ref|YP_003244582.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261284804|gb|ACX66775.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 575

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I++ N   +IV   + +    L   F        P    +++     + 
Sbjct: 365 ANTKAEKAIELIQQMNEK-VIVFTEYRATQEYLLNYFRDHGLVSVPYRGGMNRGKKDWMM 423

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   GK  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 424 DLFRGKAQVMIA-TEAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 476

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V +Y L    TI+E +L  L  K  + ++++  L
Sbjct: 477 NDVKIYNLSTSGTIEEHILNLLHEKINMFEMVIGGL 512


>gi|224100361|ref|XP_002311847.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851667|gb|EEE89214.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 670

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 449 QMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 508

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP- 98
                  +    +   K   + +++       L  L         Q     G T  +D  
Sbjct: 509 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFSGHQYCRIDGNTGGEDRD 568

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N    +         + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 569 ASIDAFNRPGSEKFCFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 622

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 623 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 662


>gi|168037602|ref|XP_001771292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162677381|gb|EDQ63852.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1032

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHP 116
           + +++       L  L+                 T D     I ++N    +        
Sbjct: 486 SRVLIFSQMTRLLDILEDYCQYRTYQYCRIDGNTTGDDRESAIDQFNAPNSEKFCFLLST 545

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    +I++ +   W+ +   Q        R  + G K+ V V+    + TI
Sbjct: 546 RAGGLGINL-ATADIVILYDSDWNPQVDLQA-----QDRAHRIGQKKEVQVFRFCTEFTI 599

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E V++R   K  +  L++ 
Sbjct: 600 EEKVIERAYKKLALDALVIQ 619


>gi|30683830|ref|NP_850116.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253006|gb|AEC08100.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3574

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1188 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|194908547|ref|XP_001981791.1| GG12244 [Drosophila erecta]
 gi|190656429|gb|EDV53661.1| GG12244 [Drosophila erecta]
          Length = 1277

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 911  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLG 970

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 971  INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1024

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1025 RQVAKQATAKRVID 1038


>gi|13603721|gb|AAK31908.1|AF247809_1 putative chromatin remodeling protein SYD [Arabidopsis thaliana]
          Length = 3574

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1187

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1188 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|20197603|gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis
            thaliana]
          Length = 3571

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQ 102
            K++ L+ ++ K  A    ++        L  +         +     G+T   D    I 
Sbjct: 1071 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1130

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 1131 GFNKSGSPFFIFLLSIRAGGVGVNLQ-AADTVILFDTDWNPQVDLQAQAR-----AHRIG 1184

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V      N+++E V      K  + +  + A
Sbjct: 1185 QKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1221


>gi|330796151|ref|XP_003286132.1| hypothetical protein DICPUDRAFT_150076 [Dictyostelium purpureum]
 gi|325083877|gb|EGC37318.1| hypothetical protein DICPUDRAFT_150076 [Dictyostelium purpureum]
          Length = 2186

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LL 112
           KA    +++     S L  L               G     D    I  +++      + 
Sbjct: 821 KAGGHKVLIFSQMVSVLDILDDYLTFRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRFVF 880

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY L+ 
Sbjct: 881 LLCTRAGGIGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQDKMVKVYRLVT 934

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +NT + L+  R   K  +  ++L  +
Sbjct: 935 KNTYERLMFDRASKKLGLDRVVLTKM 960


>gi|326472599|gb|EGD96608.1| DNA repair protein Rad5 [Trichophyton tonsurans CBS 112818]
          Length = 1177

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 971  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 1030

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   I                                  +L     + G GLNL  
Sbjct: 1031 LAQFNAPIIDEEDIDDDDDIANSPDPFKGYRSRPRKDKGPPPSVLLISLRAGGVGLNLTV 1090

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1091 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILKIQERK 1144

Query: 188  STIQDLL 194
              I   L
Sbjct: 1145 MMIAGSL 1151


>gi|302652102|ref|XP_003017911.1| hypothetical protein TRV_08077 [Trichophyton verrucosum HKI 0517]
 gi|291181496|gb|EFE37266.1| hypothetical protein TRV_08077 [Trichophyton verrucosum HKI 0517]
          Length = 1177

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 971  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 1030

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   I                                  +L     + G GLNL  
Sbjct: 1031 LAQFNAPIIDEEDIDDDDDIAHSPDPFKEYRNRRRKDKGSPPSVLLISLRAGGVGLNLTV 1090

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1091 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILKIQERK 1144

Query: 188  STIQDLL 194
              I   L
Sbjct: 1145 MMIAGSL 1151


>gi|302497381|ref|XP_003010691.1| hypothetical protein ARB_03393 [Arthroderma benhamiae CBS 112371]
 gi|291174234|gb|EFE30051.1| hypothetical protein ARB_03393 [Arthroderma benhamiae CBS 112371]
          Length = 1177

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 971  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 1030

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   I                                  +L     + G GLNL  
Sbjct: 1031 LAQFNAPIIDEEDIDDDDDIAHSPDPFKEYRNRRRKDKGSPPSVLLISLRAGGVGLNLTV 1090

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1091 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILKIQERK 1144

Query: 188  STIQDLL 194
              I   L
Sbjct: 1145 MMIAGSL 1151


>gi|116196848|ref|XP_001224236.1| hypothetical protein CHGG_05022 [Chaetomium globosum CBS 148.51]
 gi|88180935|gb|EAQ88403.1| hypothetical protein CHGG_05022 [Chaetomium globosum CBS 148.51]
          Length = 819

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 19/152 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
            +EE    E    K +AL  I++     + + +I+   + S    +Q      R     P
Sbjct: 656 DEEESLDPETKSSKTEALLKILQATLKNDGSKVIIFSQWTSM-KYVQTRCRYSRISTTTP 714

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            T          ++ A  + C  GLNL    + +V    WW      Q ++R+      +
Sbjct: 715 AT---------RIMPASLSVCSVGLNL-VSADTVVLADSWWAPAIEDQAVDRV-----HR 759

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G  R   V+ L+ + T++E VL     K  +
Sbjct: 760 LGQTRPTTVWRLVMEGTVEERVLDIQGEKREL 791


>gi|326483589|gb|EGE07599.1| DNA repair protein rad5 [Trichophyton equinum CBS 127.97]
          Length = 1152

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 946  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 1005

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   I                                  +L     + G GLNL  
Sbjct: 1006 LAQFNAPIIDEEDIDDDDDIANFPDPFKGYRSRPRKDKGPPPSVLLISLRAGGVGLNLTV 1065

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1066 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILKIQERK 1119

Query: 188  STIQDLL 194
              I   L
Sbjct: 1120 MMIAGSL 1126


>gi|327298855|ref|XP_003234121.1| DNA repair protein Rad5 [Trichophyton rubrum CBS 118892]
 gi|326464299|gb|EGD89752.1| DNA repair protein Rad5 [Trichophyton rubrum CBS 118892]
          Length = 1027

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 821  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 880

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   I                                  +L     + G GLNL  
Sbjct: 881  LAQFNAPIIDEEDIDDDDDIAHSPDPFKEYRNRRRKDKGSPPSVLLISLRAGGVGLNLTV 940

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 941  -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILKIQERK 994

Query: 188  STIQDLL 194
              I   L
Sbjct: 995  MMIAGSL 1001


>gi|259149676|emb|CAY86480.1| Uls1p [Saccharomyces cerevisiae EC1118]
          Length = 1619

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQK------AFPQGRTLD-----K 96
               KI+    +I    +++    II+   F +    L+        FP  + +      +
Sbjct: 1441 PSTKIEQCIRVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQR 1500

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I E+  + +  +L     +   GL L    ++++    +W+    +Q  +R     
Sbjct: 1501 RSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVI-VDPFWNPYVEEQAQDRC---- 1555

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +    + V V+ L  ++++++ + +  + K  + D  ++  K
Sbjct: 1556 -YRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGK 1598


>gi|62087684|dbj|BAD92289.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a3 variant [Homo sapiens]
          Length = 992

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|195342147|ref|XP_002037663.1| GM18179 [Drosophila sechellia]
 gi|194132513|gb|EDW54081.1| GM18179 [Drosophila sechellia]
          Length = 994

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N EG           + G G+NL    + ++ F   W+ +   Q   R    
Sbjct: 2   RRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR---- 56

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 57  -AHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 99


>gi|315042015|ref|XP_003170384.1| DNA repair protein rad5 [Arthroderma gypseum CBS 118893]
 gi|311345418|gb|EFR04621.1| DNA repair protein rad5 [Arthroderma gypseum CBS 118893]
          Length = 1181

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 52/187 (27%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   +         +V   F S L  +             F    +       
Sbjct: 975  TSAKIHALITHLSHLPKGTKAVVFSQFTSFLDLISPQLTTAGIAHLRFDGTMSQKARATV 1034

Query: 101  IQEWNEGKI---------------------------------PLLFAHPASCGHGLNLQY 127
            + ++N   +                                  +L     + G GLNL  
Sbjct: 1035 LAQFNAPIVDEDDIDDDEDITNSPDPFKGYRSKPKKEKTLPPSVLLISLRAGGVGLNLTV 1094

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1095 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVVRFVVKNSIEGRILKIQERK 1148

Query: 188  STIQDLL 194
              I   L
Sbjct: 1149 MMIAGSL 1155


>gi|297791319|ref|XP_002863544.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309379|gb|EFH39803.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2251

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +       +   
Sbjct: 1005 ASAKLTLLHSMLKVLQKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADR 1064

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      +CG G+NL    + ++ +   ++     Q + R      
Sbjct: 1065 QAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1118

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1119 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1158


>gi|71028160|ref|XP_763723.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350677|gb|EAN31440.1| hypothetical protein, conserved [Theileria parva]
          Length = 845

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEW 104
           ++ L  I+E+     +++   F + L  +Q                  +L      I  +
Sbjct: 702 LEILSNIMERNE--KVLIFSQFTNYLDIIQHVLRLREITPVLRLDGTVSLTDRDTIINTF 759

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N   + +L         GLNL    N ++     W+     Q  +R       + G ++ 
Sbjct: 760 NTDAVSILLISVKVGNVGLNLSVANN-VILMDQSWNPYNDIQAEDRC-----HRIGQQKI 813

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V +Y L  ++TI+E ++ +   K
Sbjct: 814 VNIYKLFVKDTIEEYIIVKSHNK 836


>gi|296809774|ref|XP_002845225.1| DNA repair protein rad5 [Arthroderma otae CBS 113480]
 gi|238842613|gb|EEQ32275.1| DNA repair protein rad5 [Arthroderma otae CBS 113480]
          Length = 1178

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 54/187 (28%), Gaps = 50/187 (26%)

Query: 52   HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
               KI AL   + +       +V   F S L  +             F    +       
Sbjct: 972  TSAKIHALITHLTRLPRGTKAVVFSQFTSFLDLISPQLTAAGIAHLRFDGTMSQKARATV 1031

Query: 101  IQEWNEG------------------------------KIP---LLFAHPASCGHGLNLQY 127
            + ++N                                K P   +L     + G GLNL  
Sbjct: 1032 LAQFNAPIIDEEDIEDDDDIANSPGPFRSYRSKPKKEKTPPANVLLISLRAGGVGLNLTV 1091

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW      Q I+R+      + G  R V V   + +N+I+  +L+    K
Sbjct: 1092 -ANHVFMMDPWWSFAVEAQAIDRV-----HRMGQLRDVKVSRFVVKNSIEGRILRIQERK 1145

Query: 188  STIQDLL 194
              I   L
Sbjct: 1146 MMIAGSL 1152


>gi|167517701|ref|XP_001743191.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778290|gb|EDQ91905.1| predicted protein [Monosiga brevicollis MX1]
          Length = 102

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++ +    I ++N    I          G G+NL  G + +V F   W+     
Sbjct: 10  RMDGMTSIKRRQPLIAQFNSNPSIFTFVLTTRVGGLGVNLT-GADRVVIFDPDWNPSTDV 68

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           Q  ER       + G  RAV VY L+   TI+E +  R 
Sbjct: 69  QARERAW-----RIGQSRAVAVYRLLCAGTIEEKIYHRQ 102


>gi|67515525|ref|XP_657648.1| hypothetical protein AN0044.2 [Aspergillus nidulans FGSC A4]
 gi|74681569|sp|Q5BHD6|RAD5_EMENI RecName: Full=DNA repair protein rad5
 gi|40746207|gb|EAA65363.1| hypothetical protein AN0044.2 [Aspergillus nidulans FGSC A4]
 gi|259489769|tpe|CBF90313.1| TPA: DNA repair protein rad5 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5BHD6] [Aspergillus
            nidulans FGSC A4]
          Length = 1202

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1101 VLLISLKAGGVGLNLTAASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVNVVRF 1154

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+E +L+    K  I   L
Sbjct: 1155 IVKDSIEERMLRVQERKMGIAGSL 1178


>gi|331217115|ref|XP_003321236.1| Rad54b [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309300226|gb|EFP76817.1| Rad54b [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 965

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 30/164 (18%)

Query: 53  DEKIKALE---VIIEKANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCTIQE- 103
             K+ AL     I++K N   II+  +F   L  ++       +P  R   K     ++ 
Sbjct: 655 SGKLIALAKFLDILKKKNNEKIILVSNFTKTLDIVESHCKASHYPFCRLDGKTAQNQRDN 714

Query: 104 ----WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +N        +      S G GLNL  G +         +     Q + RI     
Sbjct: 715 IVQVFNRSSASAQFIFLLSSKSGGVGLNL-IGASR--------NPATDLQAMARIW---- 761

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G ++   +Y  +   TIDE + QR  TK  +   L++A K 
Sbjct: 762 -RQGQQKPCHIYRFLTTGTIDECIFQRQVTKIGLATDLMSAPKA 804


>gi|312381992|gb|EFR27591.1| hypothetical protein AND_05624 [Anopheles darlingi]
          Length = 1508

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 30/169 (17%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK---------------------AF 88
              K++    I+E++      ++V       L  +++                       
Sbjct: 163 TSPKMEIFFCILEESIRLGDRLLVFSQSLLTLNLIERFLQRNKIPGTESHWSRNISYFRL 222

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +    I E+N    + L      +   G+NL  G N +V F   W+     Q 
Sbjct: 223 DGSTVAQEREKLINEFNSNPNVHLFLVSTRAGSLGINL-VGANRVVVFDASWNPCHDTQA 281

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      R  + G K+  FVY L+  N +++ +  R   K  + D +++
Sbjct: 282 V-----CRVYRYGQKKPCFVYRLVMDNCLEKKIYDRQINKQGMSDRIVD 325


>gi|149636100|ref|XP_001509337.1| PREDICTED: similar to chromodomain helicase DNA binding protein 6
            [Ornithorhynchus anatinus]
          Length = 2613

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 18/149 (12%)

Query: 66   ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DKDPCTIQEWNEGKIP--LLF 113
            A    +++       L          R       GR   +     I  + +      +  
Sbjct: 941  AGGHKVLIFSQMVRCLDXXXSFGFPTRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 1000

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 1001 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 1054

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKET 202
            N+ +  +  +   K  +   +L  + ++ 
Sbjct: 1055 NSYEREMFDKASLKLGLDKAVLQDINRKG 1083


>gi|331248703|ref|XP_003336974.1| hypothetical protein PGTG_18553 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315964|gb|EFP92555.1| hypothetical protein PGTG_18553 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 711

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEK--ANAA 69
            GE  ++     +     Q  N  ++  +E    K+W+     K+  L   +E+      
Sbjct: 522 SGEPWDSTEFFKQLTMIRQFCNHPIFARDEIPHQKNWRWQDSAKLVHLVDNLERFLRGGR 581

Query: 70  PII-----VAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFA 114
            I+     V   F + L  ++KA  + +             +D    +   +    +L  
Sbjct: 582 GILRPKAVVFSSFVAFLEIIEKALKEKQMGCTWLMTLGIAKRDENLARFRTDPNCNILLG 641

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G++L+   N +      W+     Q ++R+      + G    V VY    Q 
Sbjct: 642 SIQAAGVGIDLRCAQN-VYMMEPNWNPAMENQAVDRL-----YRLGQTNEVHVYRYYVQG 695

Query: 175 TIDELVLQR 183
           +++  + Q 
Sbjct: 696 SLEMNIHQA 704


>gi|171688590|ref|XP_001909235.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944257|emb|CAP70367.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1092

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 17/143 (11%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            +V   + S L  ++ A               T +     ++ + ++  + ++     + G
Sbjct: 937  VVFSGWTSHLDLIEIALDDAGITHSRLDGKMTRNARNQAMEAFRDDPNVQVILVSIMAGG 996

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G ++ V     ++     Q ++R+      + G KR V     I   + +E +
Sbjct: 997  MGLNLTAGNSVFVM-EPQFNPAAEAQAVDRV-----HRLGQKRPVRTVRYIMSGSFEEKM 1050

Query: 181  LQRLRTKSTIQDLLLNALKKETI 203
            +     K  +  L ++  + E +
Sbjct: 1051 IALQEKKKQLASLSMDRAEAEGV 1073


>gi|198276225|ref|ZP_03208756.1| hypothetical protein BACPLE_02416 [Bacteroides plebeius DSM 17135]
 gi|198271037|gb|EDY95307.1| hypothetical protein BACPLE_02416 [Bacteroides plebeius DSM 17135]
          Length = 558

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 35/209 (16%)

Query: 2   KQYHKFQRELYC------DLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L        +   E IE         +     Q++            +   
Sbjct: 341 KEYIDAERDLIMYLQKYKEADDEKIEKALRGEVMVRINILRQIS-----------ARGKV 389

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQE------WN 105
            + I+ ++   E  N   II+    +  + +L+  FP       +D    ++       N
Sbjct: 390 RDVIEFVKDFRE--NGKKIILFCSLHEVVDQLKSYFPTAVSVTGRDSQDEKQRAVDSFQN 447

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K  ++     + G GL L    N + F    W   +  Q  +R       + G K +V
Sbjct: 448 NPKTDIIICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSV 501

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             YY + + TIDE V + ++ K  I   +
Sbjct: 502 TCYYFLGRRTIDEKVYRIIQNKKAIAKDV 530


>gi|258511768|ref|YP_003185202.1| SNF2-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478494|gb|ACV58813.1| SNF2-related protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 572

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            K++A+  ++E A    II+   + +    L     +         G         ++E 
Sbjct: 376 AKVEAVLKMLEDAPEK-IIIFTEYRASQDFLMYTLKKHGISAVPFRGGFRRGKKDWMREL 434

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              KI +L A   S G G+NLQ+  + ++ + L W+    +Q I RI      + G   A
Sbjct: 435 FSKKIRVLVA-TESGGEGINLQF-CHHMINYDLPWNPMRLEQRIGRI-----HRLGQTHA 487

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + +L+ ++TI+E +++ L+ K  + + ++
Sbjct: 488 CHIAHLVTKDTIEEHIMEILQEKVRMFEAVI 518


>gi|238494328|ref|XP_002378400.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220695050|gb|EED51393.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1663

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 19/149 (12%)

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEG- 107
             II+++      I+V  H    L  +         + +   GRT         + +N G 
Sbjct: 1258 SIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNLGS 1317

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLN+  G N ++ F   +     +Q + R       + G ++ VFV
Sbjct: 1318 EKQVYLISTRAGGLGLNI-PGANRVIIFDFKFSPVWEEQAVGR-----AYRLGQQKPVFV 1371

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y  IA  T +E++  +   K+ +   +++
Sbjct: 1372 YRFIAGGTFEEVMYNKAVFKTQLAFRVVD 1400


>gi|195349449|ref|XP_002041257.1| GM10241 [Drosophila sechellia]
 gi|194122952|gb|EDW44995.1| GM10241 [Drosophila sechellia]
          Length = 1308

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 941  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLG 1000

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1001 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1054

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1055 RQVAKQATAKRVID 1068


>gi|281347790|gb|EFB23374.1| hypothetical protein PANDA_016786 [Ailuropoda melanoleuca]
          Length = 1005

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK-------- 86
           A   +++ + +     KI AL      + +K      +V   F + L+ ++         
Sbjct: 814 ACDTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 873

Query: 87  --AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 874 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNP 932

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q  +R       + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 933 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 977


>gi|256378168|ref|YP_003101828.1| SNF2-related protein [Actinosynnema mirum DSM 43827]
 gi|255922471|gb|ACU37982.1| SNF2-related protein [Actinosynnema mirum DSM 43827]
          Length = 885

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 17/154 (11%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCT 100
           V   K++ L+ I+ +A  N   +IV  ++ + L  +  A P              +    
Sbjct: 698 VKSVKLQRLKEIVAEAEENERKVIVFSNYRAVLDLVANALPGEVFGPLTGAVPPARRQQV 757

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  ++  +   +L A   + G GLN+Q   +++V            Q I R       + 
Sbjct: 758 VDGFSSAEHGAVLVAQIVAGGVGLNIQ-AASVVVICEPQLKPTTEAQAIAR-----AHRM 811

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G  R V V+ L+++  +D  + + L  K+ + D 
Sbjct: 812 GQVRTVQVHRLLSEEGVDRRITELLARKAKLFDE 845


>gi|145539934|ref|XP_001455657.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423465|emb|CAK88260.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1292

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 31/221 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG---AVYY----DEEKHWKEVHD 53
           ++ Y K +     D +    +A N  +  +    + N      Y     +E+        
Sbjct: 659 LRNYEKLK---VLDQKKGASKA-NLLNILMSLRLVCNHPYLFTYKREFPNEDIDEMINQS 714

Query: 54  EKIKALEVIIEKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            K+K ++ II +       +++   F   L  +Q          +      ++      I
Sbjct: 715 NKLKFVDRIIPRLLEMQHKMLIFSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRII 774

Query: 102 QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N   GK  +      + G G+NL    + ++F    ++     Q I R       + 
Sbjct: 775 DSFNNSTGKSKIFLLSTRAGGLGINLT-SADTIIFTDSDFNPYRDLQAISR-----AHRM 828

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G    V V+ L+++ T +E ++Q    K  ++++++N + K
Sbjct: 829 GQTNKVKVFRLVSKYTAEERIIQIATKKLLLEEIIINPINK 869


>gi|313247391|emb|CBY15642.1| unnamed protein product [Oikopleura dioica]
          Length = 1498

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
              KC + A        E      +  K+  ++ +++K       +++       L  L+
Sbjct: 680 LNDKCSESAARLSNNAFEGSELTANCGKLLLMQKMLKKLKEQGHRVLIFSQMTKLLDLLE 739

Query: 86  ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILV 133
                     +      T       I  +N+   +  +      + G G+NL    + ++
Sbjct: 740 DYLEYEQYKYERIDGSVTGSIRQQAIDRFNKPGSESFIFLLSTRAGGLGINL-ATADTVI 798

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +   W+     Q       +R  + G K  V +Y  + QN+++E V Q  + K  +  L
Sbjct: 799 IYDSDWNPHNDIQA-----FSRAHRIGQKNKVLIYRFVTQNSVEERVAQVAKKKMMLNHL 853

Query: 194 LL 195
           ++
Sbjct: 854 VI 855


>gi|297672219|ref|XP_002814205.1| PREDICTED: helicase-like transcription factor-like [Pongo abelii]
          Length = 1009

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|255565329|ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223537108|gb|EEF38742.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 2257

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++        +++       L  L+            +      ++   
Sbjct: 984  ASAKLTVLHSMLKALYKEGHRVLIFSQMTKLLDVLEDYLTIEFGPKTYERVDGSVSVSDR 1043

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +I  +N+ K   +      SCG G+NL    + +V +   ++     Q + R      
Sbjct: 1044 QASISRFNQDKSRFVFLLSTRSCGLGINL-ATADTVVIYDSDFNPHADIQAMNR-----A 1097

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1098 HRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1137


>gi|255081825|ref|XP_002508131.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523407|gb|ACO69389.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2064

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                 G  L      I ++N       LL     + G G+NL    + +V +   ++   
Sbjct: 942  GRIDGGTPLADRQRVIVDFNTPGSDTFLLLISTRAGGQGVNL-ATADTIVLYDPDFNPFI 1000

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              Q       +R  + G  R V VY L+   T++E ++   ++K  I+ L++  ++ 
Sbjct: 1001 DSQA-----QSRAHRMGQTREVAVYQLVTAKTVEEKIVSMAKSKLAIERLVVKDVRA 1052


>gi|145522560|ref|XP_001447124.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414624|emb|CAK79727.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1013

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 23/165 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           D+ +K L           I++   F S L  L+                  + +    I 
Sbjct: 453 DKFLKKLSE-----GQHQILIFSQFTSMLNILEDYCNFRGFLYCRIDGETEIQQRDDQIA 507

Query: 103 EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+     K  +      + G G+NL    + ++ +   ++ +   Q ++R       + G
Sbjct: 508 EFTSPNSKKFIFLLSTRAGGLGINL-ATADTVIIYDSDFNPQMDMQAMDR-----AHRIG 561

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            K  V VY +  ++T++E +++R + K     L++   + +    
Sbjct: 562 QKNRVMVYRMACEHTVEEKIIERQQIKLRWDSLMIQQGRLQQKQT 606


>gi|20072056|gb|AAH26672.1| Smarca4 protein [Mus musculus]
          Length = 749

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 214 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 273

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 274 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 327

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 328 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 367


>gi|116197985|ref|XP_001224804.1| hypothetical protein CHGG_07148 [Chaetomium globosum CBS 148.51]
 gi|88178427|gb|EAQ85895.1| hypothetical protein CHGG_07148 [Chaetomium globosum CBS 148.51]
          Length = 969

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
           L  +     +   I+   F + L     RL +A      LD      Q            
Sbjct: 806 LHKLRSDNASHKSIIFSQFTTMLQLIEWRLHRAGITTVMLDGSMTPAQRQASIQHFMTNV 865

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +      + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 866 NVEVFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 919

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L  +++++  ++     K+ + +  +NA
Sbjct: 920 TRLCIEDSVESRMVLLQEKKTNMINSTINA 949


>gi|224145833|ref|XP_002325780.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222862655|gb|EEF00162.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 495

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 44  EEKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQ---------------- 85
           E  +    +  K+  L  I  +        +V       L  ++                
Sbjct: 103 ENNYKVIDYSGKMVLLLDILVMSSNVGDKTLVFSQSIPTLDLIELYLSRLTRHGKKGKFW 162

Query: 86  ---KAFPQGRTLDKDPC-TIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              K +  GRT   +    ++ +N+ +   +        +   G+NL Y  N ++     
Sbjct: 163 RKGKDWLDGRTESSERQRLVERFNDPENKRVKCTLISTRAGSLGINL-YAANRVIIVDGS 221

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+     Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++
Sbjct: 222 WNPTYDLQAI-----YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 274


>gi|167535991|ref|XP_001749668.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771816|gb|EDQ85477.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1317

 Score = 82.7 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 34/185 (18%)

Query: 28   KTVKCLQLANGAVYYDE-------------EKHWKEVHDEKIKALEVIIEKANAA----P 70
            K     +LA  A   DE                 K + D KI+AL + ++   A      
Sbjct: 1047 KLNGLKRLATAADQSDEAASGDAPGAKRAKTAVAKVLFDSKIQALLMTLDAIWAREPLAK 1106

Query: 71   IIVAYHFNSDL----ARLQKAFPQGRTLDKDPCTIQEWN-------EGKIPLLFAHPASC 119
            ++V   F++ L     RL++   +  TL       Q  N       +    +      + 
Sbjct: 1107 VLVFSQFSNTLTMVGERLKRRHLKFATLVGSMERTQRTNALAGFAKDPSTNVFLLSTRAG 1166

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              G+NL    N +V      +    QQ I R+      + G  R V V+ L+ +++ID  
Sbjct: 1167 AVGINLTE-ANHVVLMDPCVNPATEQQAIGRV-----HRLGQTRPVHVHRLLMRHSIDTR 1220

Query: 180  VLQRL 184
            + +  
Sbjct: 1221 IARLR 1225


>gi|159897832|ref|YP_001544079.1| helicase domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890871|gb|ABX03951.1| helicase domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 669

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 18/152 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            K + L  II K + + IIV   F + L  L+                    +    ++ 
Sbjct: 459 SKARTLLKII-KNDDSKIIVYTEFVATLEFLRDFLVDHGVESVLFHGGLSGMQKRNAVER 517

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +GK  +      S G GLNLQ+  + LV + L W+    +Q I R+      + G +R
Sbjct: 518 FRDGKAQVFL-STESGGQGLNLQF-CHRLVNYDLPWNPMRIEQRIGRV-----HRYGQER 570

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y LI + TI+E +L  L  K  +   ++
Sbjct: 571 PVEIYTLILRGTIEEYILHVLTGKIDMFQTVI 602


>gi|85540717|sp|Q4WVM1|RAD5_ASPFU RecName: Full=DNA repair protein rad5
          Length = 1245

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 54/188 (28%)

Query: 52   HDEKIKALEVIIEKANAAPI----IVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               KI AL   I   N  P     +V   F S L  +     +                 
Sbjct: 1041 TSAKIHAL---INHLNRVPANTKSVVFSQFTSFLDLIGAQLTKAGISYVRLDGTMPQKAR 1097

Query: 98   PCTIQEWNE--------------GKIP-----------------LLFAHPASCGHGLNLQ 126
               + E+N                  P                 +L     + G GLNL 
Sbjct: 1098 AEVLAEFNRTETFHQEEIDEDEGPDTPRVRISSKNSRSSPKSPAVLLISLRAGGVGLNLT 1157

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N+ +    WW      Q I+R+      + G  R V V   I +++I+  +L+    
Sbjct: 1158 AASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVSVTRFIVKDSIEGRMLRVQER 1211

Query: 187  KSTIQDLL 194
            K  I   L
Sbjct: 1212 KMNIAGSL 1219


>gi|70997286|ref|XP_753393.1| DNA excision repair protein (Rad5) [Aspergillus fumigatus Af293]
 gi|66851029|gb|EAL91355.1| DNA excision repair protein (Rad5), putative [Aspergillus fumigatus
            Af293]
 gi|159126880|gb|EDP51996.1| DNA excision repair protein (Rad5), putative [Aspergillus fumigatus
            A1163]
          Length = 1301

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 54/188 (28%)

Query: 52   HDEKIKALEVIIEKANAAPI----IVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               KI AL   I   N  P     +V   F S L  +     +                 
Sbjct: 1097 TSAKIHAL---INHLNRVPANTKSVVFSQFTSFLDLIGAQLTKAGISYVRLDGTMPQKAR 1153

Query: 98   PCTIQEWNE--------------GKIP-----------------LLFAHPASCGHGLNLQ 126
               + E+N                  P                 +L     + G GLNL 
Sbjct: 1154 AEVLAEFNRTETFHQEEIDEDEGPDTPRVRISSKNSRSSPKSPAVLLISLRAGGVGLNLT 1213

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N+ +    WW      Q I+R+      + G  R V V   I +++I+  +L+    
Sbjct: 1214 AASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVSVTRFIVKDSIEGRMLRVQER 1267

Query: 187  KSTIQDLL 194
            K  I   L
Sbjct: 1268 KMNIAGSL 1275


>gi|167773597|gb|ABZ92233.1| helicase-like transcription factor [synthetic construct]
          Length = 1008

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 824 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 883

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 884 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 942

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 943 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 980


>gi|54025735|ref|YP_119977.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54017243|dbj|BAD58613.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 575

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 21/207 (10%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y    +    D             +      Q+ N       E         K+    
Sbjct: 348 RVYDTLLQRAVDDGFGAGPQRQSRVLAALTALKQVCNHPGLVTGELDELAGRSGKLDLCT 407

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEG 107
            I+     NAAP ++   +      L +            F  G    +    ++++   
Sbjct: 408 DIVAANLDNAAPTLIFTQYRGTGELLVRHLREQFGLAAPFFHGGLNQTERARIVRDFQSP 467

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+L     + G GL L    + ++ F  WW+     Q  +R       + G  R V 
Sbjct: 468 DGPPVLVLSLRAAGTGLTLTRAAD-VIHFDRWWNPAVEAQASDR-----AHRIGQTRTVT 521

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDL 193
           V  L +  T++E +      KS + DL
Sbjct: 522 VTTLTSGTTVEEHIAGMHDRKSALTDL 548


>gi|255954695|ref|XP_002568100.1| Pc21g10680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589811|emb|CAP95965.1| Pc21g10680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 943

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 28/180 (15%)

Query: 42  YDEEKHWKE-----VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQ-----KA 87
            +EE  W       +   KI A+       +++     I++   F   +  LQ     + 
Sbjct: 721 SEEEGDWISRVGDRMPSAKITAVRGLVSDWVKEDEEVKIVIFVQFLKTVQLLQLMCEKEG 780

Query: 88  FP------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +       +   + +D    Q   E  I ++ +   + G GLNL    N  +    WW+ 
Sbjct: 781 WKYAVITGKVSPISRDKQIEQFSKEKDIKVMISSLRTGGVGLNLTM-ANKCILMDPWWNE 839

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALK 199
               Q   R+      + G  R V    ++A+ +ID  +++  + K+   D L    ALK
Sbjct: 840 AIQNQAYCRL-----YRIGQPRPVEYVQVVAKVSIDSWMMRLQKEKTRNIDRLFSKEALK 894


>gi|157108129|ref|XP_001650090.1| helicase [Aedes aegypti]
 gi|108879397|gb|EAT43622.1| helicase [Aedes aegypti]
          Length = 1455

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K  A+   +++       +  ++              G T  ++   
Sbjct: 929  ASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLDGTTKAEERGD 988

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N    +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 989  LLKKFNCKNSEYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAH 1042

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1043 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1082


>gi|85102654|ref|XP_961377.1| DNA repair protein RAD16 [Neurospora crassa OR74A]
 gi|16944468|emb|CAC18166.2| probable nucleotide exsicion repair protein RAD16 [Neurospora crassa]
 gi|28922921|gb|EAA32141.1| DNA repair protein RAD16 [Neurospora crassa OR74A]
          Length = 1079

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
            L  +     +   I+   F + L     RL++A      LD      Q            
Sbjct: 916  LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASINHFMTNV 975

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 976  DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQSRPCTI 1029

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ + +  +NA
Sbjct: 1030 TRLCIEDSVESRMVLLQEKKTNMINSTINA 1059


>gi|301783337|ref|XP_002927083.1| PREDICTED: helicase-like transcription factor-like [Ailuropoda
           melanoleuca]
          Length = 1007

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK-------- 86
           A   +++ + +     KI AL      + +K      +V   F + L+ ++         
Sbjct: 816 ACDTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 875

Query: 87  --AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 876 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNP 934

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q  +R       + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 935 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 979


>gi|158255898|dbj|BAF83920.1| unnamed protein product [Homo sapiens]
          Length = 1009

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|27882409|gb|AAH44659.1| Helicase-like transcription factor [Homo sapiens]
 gi|119599297|gb|EAW78891.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_c [Homo
           sapiens]
          Length = 1008

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 824 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 883

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 884 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 942

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 943 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 980


>gi|21071052|ref|NP_003062.2| helicase-like transcription factor [Homo sapiens]
 gi|21071054|ref|NP_620636.1| helicase-like transcription factor [Homo sapiens]
 gi|60390864|sp|Q14527|HLTF_HUMAN RecName: Full=Helicase-like transcription factor; AltName:
           Full=DNA-binding protein/plasminogen activator inhibitor
           1 regulator; AltName: Full=HIP116; AltName: Full=RING
           finger protein 80; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3
 gi|119599295|gb|EAW78889.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
 gi|119599298|gb|EAW78892.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
 gi|119599299|gb|EAW78893.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
          Length = 1009

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|328773098|gb|EGF83135.1| hypothetical protein BATDEDRAFT_7470 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 104

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I ++       G GLNL     +++   LWW+     Q I+R+      + G +  V V 
Sbjct: 4   ISVMLVSLKCGGVGLNLSIACRVII-CDLWWNPAVEDQAIDRV-----HRIGQRVDVRVS 57

Query: 169 YLIAQNTIDELVLQRLRTKSTIQ 191
           YL+A++TI+E +L    +K  I 
Sbjct: 58  YLVAKDTIEERILIMQESKRQIA 80


>gi|126540715|emb|CAM46170.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 1184

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 855 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 908

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 909 NSYEREMFDKASLKLGLDKAILQDINRKG 937


>gi|531196|gb|AAA67436.1| ATPase [Homo sapiens]
          Length = 1009

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|253573375|ref|ZP_04850718.1| helicase protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846903|gb|EES74908.1| helicase protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 592

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I + N   +IV   + +    L K F        P    +++     + 
Sbjct: 378 ANSKAEKAMELIREMNDK-VIVFTEYRATQEYLLKYFRERGMTAVPYRGGMNRGKKDWMM 436

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G+  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 437 DLFRGRAQVMIA-TEAGGEGINLQF-CHQMINFDLPWNPMRVEQRIGRV-----HRLGQT 489

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +Y L  + TI+E +L  L  K  + ++++
Sbjct: 490 NDVHIYNLSTKGTIEEHILHLLHEKINMFEMVI 522


>gi|163955122|ref|YP_001648226.1| hypothetical protein OsV5_149f [Ostreococcus virus OsV5]
 gi|163638571|gb|ABY27930.1| hypothetical protein OsV5_149f [Ostreococcus virus OsV5]
          Length = 480

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWNEG--- 107
             K++ L  +I+       +V   F  ++  +Q+    P  R     P   ++       
Sbjct: 302 SNKMETLFRMIKSHPDEKTLVFCQFRGEMDFIQQNMECPTFRIDGSVPKEERDNQVNAFK 361

Query: 108 KIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           K P   +      S G GLNLQ    + +     W+     Q+I R       + G  + 
Sbjct: 362 KAPPGAVFIIQIKSGGQGLNLQEATRVYI-TGPSWNPATELQVIGR-----AHRTGQTKP 415

Query: 165 VFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNALKKE 201
           V+V  LI +      +++E +L     KS +   +LN  + E
Sbjct: 416 VYVKKLIYKEGDGFISVEEEILALQGHKSIVCSKVLNDERIE 457


>gi|319642264|ref|ZP_07996923.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|317386120|gb|EFV67040.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 559

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 35/209 (16%)

Query: 2   KQYHKFQRELYC------DLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L        +   E IE         +     Q++            +   
Sbjct: 342 KEYIDAERDLIMYLQKYKEADDEKIEKALRGEVMVRINILRQIS-----------ARGKV 390

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQE------WN 105
            + I+ ++   E  N   II+    +  + +L+  FP       +D    ++       N
Sbjct: 391 RDVIEFVKDFRE--NGKKIILFCSLHEVVDQLKSYFPTAVSVTGRDSQDEKQRAVDSFQN 448

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K  ++     + G GL L    N + F    W   +  Q  +R       + G K +V
Sbjct: 449 NPKTDIIICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSV 502

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             YY + + TIDE V + ++ K  I   +
Sbjct: 503 TCYYFLGRRTIDEKVCRIIQNKKAIAKDV 531


>gi|242777640|ref|XP_002479075.1| DNA excision repair protein (Rad5), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218722694|gb|EED22112.1| DNA excision repair protein (Rad5), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1183

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 45/182 (24%)

Query: 52   HDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCT 100
               KI AL   +++    +  +V   F S L  +     +                    
Sbjct: 982  TSAKIHALITHLLKLPPNSKSVVFSQFTSFLDLIGPQLTKAGLTHLRLDGSMPQKARAEV 1041

Query: 101  IQEWNEGKI----------------------------PLLFAHPASCGHGLNLQYGGNIL 132
            ++++N  +I                             +L     + G GLNL    N +
Sbjct: 1042 LRQFNRTEIYEELESDEDAPKDGGASATHSKPPQPSPSILLISLRAGGVGLNLT-AANNV 1100

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 WW      Q I+R+      + G  R V V   + +++I+  +L+    K  I  
Sbjct: 1101 FMMDPWWSFAVEAQAIDRV-----HRMGQLREVSVTRFVVKDSIEVRMLRVQERKMNIAG 1155

Query: 193  LL 194
             L
Sbjct: 1156 SL 1157


>gi|320164103|gb|EFW41002.1| chromodomain-helicase-DNA-binding protein 1-like protein
           [Capsaspora owczarzaki ATCC 30864]
          Length = 1103

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL    + ++FF   ++ +   Q   R       + G  R V V 
Sbjct: 338 CFVFLLSTRAGGLGLNL-VSADTVIFFDSDFNPQADLQAAAR-----AHRLGQTRPVRVI 391

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+AQ+T++E+VL+R + K  +   ++ 
Sbjct: 392 RLVAQHTVEEIVLRRAQRKLELTHAVIQ 419


>gi|73990698|ref|XP_534300.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a3 [Canis
            familiaris]
          Length = 1106

 Score = 82.3 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQK-------- 86
            A   +++ + +     KI AL      + +K      +V   F + L+ ++         
Sbjct: 915  ACDTEKKSNTEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 974

Query: 87   --AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 975  FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNP 1033

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                Q  +R       + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 1034 AAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 1078


>gi|39965277|ref|XP_365085.1| hypothetical protein MGG_09930 [Magnaporthe oryzae 70-15]
 gi|145013168|gb|EDJ97809.1| hypothetical protein MGG_09930 [Magnaporthe oryzae 70-15]
          Length = 941

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 21/164 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
           E+  W E    K++ L  ++ +   N    ++   F   +  L +               
Sbjct: 753 EKDSWME--SGKVQKLLELLRQFRKNGDRALIFTRFAKVIEILTECLSTAEVPHLTFQGS 810

Query: 94  --LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D     I E+NE K +        + G G+NL    N ++ F    + ++  Q    
Sbjct: 811 TAVDMRQDLIDEFNENKDLTAFLLTTGAGGTGINL-ASANKVIIFDQSDNPQDDVQA--- 866

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  R V V  LI++++I+ELV +  + K  + + +
Sbjct: 867 --ENRAHRFGQTRPVEVIRLISRDSIEELVYKACQKKLELANRV 908


>gi|118401967|ref|XP_001033303.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89287651|gb|EAR85640.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1040

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 49   KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            K    +K K+L     +   A ++ A     D ++ ++   Q    D      +  N  +
Sbjct: 881  KLTKSQKQKSLYHFENQTTNADLLQASTLKEDSSQQEQTMGQEEQYDNSNQNQE--NTSQ 938

Query: 109  IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P +L A   S   GLNL  G N L+    WW+     Q I RI      + G ++  ++
Sbjct: 939  TPTVLLASLMSGYVGLNLT-GANNLILCDSWWNPAVEDQAINRI-----HRLGQQKQTYI 992

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y +I ++TI+E + Q    K  I   + N+
Sbjct: 993  YKMICKDTIEEKIQQINDQKRDIFQTIFNS 1022


>gi|302819025|ref|XP_002991184.1| hypothetical protein SELMODRAFT_429540 [Selaginella moellendorffii]
 gi|300141012|gb|EFJ07728.1| hypothetical protein SELMODRAFT_429540 [Selaginella moellendorffii]
          Length = 1524

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 69   APIIVAYHFNSDLA----RLQKAFPQGRTLD-------KDPCTIQEWNEGKIPLLFAHPA 117
               +V   + S L     RL+KA  + R LD       +D    +   + ++ ++     
Sbjct: 989  EKALVFSQWTSLLDLVEPRLEKAGLEFRRLDGTMSVMERDAAVCEFNEKPEVSVMLMGLK 1048

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                GLN+    ++L+   +WW+     Q I+R       + G  R V V     + TI+
Sbjct: 1049 VGSLGLNMVAACHVLLL-DVWWNPTVEDQAIDR-----AHRIGQTRDVHVTRFTVKKTIE 1102

Query: 178  ELVLQRL 184
            + +L   
Sbjct: 1103 DRILALQ 1109


>gi|194386618|dbj|BAG61119.1| unnamed protein product [Homo sapiens]
          Length = 1108

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LL 112
           KA    +++       L  L+      R L          +     I  +++      + 
Sbjct: 721 KAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 780

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY L+ 
Sbjct: 781 LLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQNKAVKVYRLVT 834

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +N+ +  +  R   K  +   +L ++
Sbjct: 835 RNSYEREMFDRASLKLGLDKAVLQSM 860


>gi|297286676|ref|XP_002803057.1| PREDICTED: helicase-like transcription factor-like [Macaca mulatta]
          Length = 932

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 748 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 807

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 808 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 866

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 867 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 904


>gi|47222924|emb|CAF99080.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2099

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---K 65
            +E   +   E +E         + L++A      +++          +  +E  +E   +
Sbjct: 1548 KEFVTEADAEILEHSGKMMLLFEILRMAEE---VEDKVLVFSQSLISLDLIEDFLELSCR 1604

Query: 66   ANAAPIIVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            A     +  Y      F + D  RL  +     T  K      + +  +  L      + 
Sbjct: 1605 AKDEDKVSPYKGEGKWFRNIDYYRLDGSTS-ATTRKKWAEEFNDTSNVRGRLFLISTRAG 1663

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              G+NL    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T++E 
Sbjct: 1664 SLGINL-VAANRVIIFDASWNPSYDVQSIFRV-----YRFGQHKTVFVYRFLAQGTMEEK 1717

Query: 180  VLQRLRTKSTIQDLLLN 196
            +  R  TK ++   +++
Sbjct: 1718 IYDRQVTKQSLSFRVVD 1734


>gi|32473602|ref|NP_866596.1| SNF2 family helicase [Rhodopirellula baltica SH 1]
 gi|32398282|emb|CAD78377.1| helicase, Snf2 family [Rhodopirellula baltica SH 1]
          Length = 914

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 28  KTVKCL---QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDL 81
           +  KCL   ++A  + Y  +++  +  +  K++ L  ++E   A P   I++   +   L
Sbjct: 605 RMQKCLLMARMACDSTYLLDQEADE--YSSKLERLGELLEGLIADPTRKIVLFSEWRRML 662

Query: 82  ARLQKAFPQ---------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            R++    Q         G+   K    I  +  N+ +  +      +   GLNLQ   N
Sbjct: 663 TRVENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQNDPECRV-INMTNAGSTGLNLQ-AAN 720

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRT 186
            ++   L W+    +Q I R       + G +  V VY L+  +    TI+E +L  L +
Sbjct: 721 TVINVDLPWNPAVLEQRIAR-----AYRMGQENPVHVYKLVTTSEPTPTIEEGLLTTLAS 775

Query: 187 KSTIQDLLLN 196
           K  + D  LN
Sbjct: 776 KQDLADASLN 785


>gi|47222591|emb|CAG02956.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1174

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 38/177 (21%)

Query: 52   HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI-------- 101
            H  K+  L  I+  A      ++V   F   L  +++             ++        
Sbjct: 915  HSGKMVLLFKILRMAEELEEKVLVFSQFLLSLDLIERYLQTSHAATGLSSSVKVSRWEKN 974

Query: 102  -------------------QEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                                E+N     +  LL     +   G+NL    + +V F   W
Sbjct: 975  VDYFRIDGSVGPQLRKKWADEFNNAANNRCKLLLISTKAGSLGINL-VAASRVVIFDASW 1033

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     Q + R+      + G  R VFVY  +AQ T++E +  R  TK ++ + +++
Sbjct: 1034 NPSYDVQSVYRV-----YRFGQVRPVFVYRFLAQGTMEEKIYDRQVTKQSLSNRVVD 1085


>gi|258567128|ref|XP_002584308.1| hypothetical protein UREG_04997 [Uncinocarpus reesii 1704]
 gi|237905754|gb|EEP80155.1| hypothetical protein UREG_04997 [Uncinocarpus reesii 1704]
          Length = 1183

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N +     WW      Q I+R+      + G  + V V   
Sbjct: 1081 ILLISLRAGGVGLNLT-AANHVYMMDPWWSFAVEAQAIDRV-----HRMGQLKDVKVTRF 1134

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +N+I+E +L+    K  I   L
Sbjct: 1135 VVKNSIEERMLRVQERKMMIAGSL 1158


>gi|209876065|ref|XP_002139475.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209555081|gb|EEA05126.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1923

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 30/223 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYDEEKHWKEVHD 53
           K Y + +R    D         +              K +   N  +  +      E  +
Sbjct: 738 KGYEE-ERRACSDFDENEENFSSEKVFVDLYSHYMYDKEINSDNKQIKTERNDEVIENTE 796

Query: 54  E---KIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK-DPCT 100
           E   K + L+   ++     +++   F   L  L         Q     G T        
Sbjct: 797 ENNYKSEKLDKPKKRCRMHKVLIFTQFQLILDELENYCLWRGWQYMRLDGSTNKLIRELD 856

Query: 101 IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+E+      +        + G G+NL    N +V +   W+     Q ++R       +
Sbjct: 857 IREFGLPDNYVFIYLICTRAGGLGINL-VSANHVVMYDEDWNPFVDLQAVDR-----AHR 910

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V ++ L+ + +++E ++     K  +  +++ A ++E
Sbjct: 911 IGQTRDVCIWKLVTEWSVEERMVFGREQKLKLDKMVIKAREEE 953


>gi|312380716|gb|EFR26634.1| hypothetical protein AND_07156 [Anopheles darlingi]
          Length = 1492

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K  A+   +++       +  ++              G T  ++   
Sbjct: 987  ASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLDGTTKSEERGD 1046

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N       L      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 1047 LLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAH 1100

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1101 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1140


>gi|331251008|ref|XP_003338107.1| SNF2/helicase domain-containing protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309317097|gb|EFP93688.1| SNF2/helicase domain-containing protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 712

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 28/190 (14%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEK--ANAA 69
            GE  ++     +     Q  N  ++  +E    K+W+     K+  L   +E+      
Sbjct: 522 SGEPWDSTEFFKQLTMIRQFCNHPIFARDEIPHQKNWRWQDSAKLVHLVDNLERFLRGGR 581

Query: 70  PII-----VAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGKIPLLF 113
            I+     V   F + L  ++KA  + +              +D    +   +    +L 
Sbjct: 582 GILRPKAVVFSSFVAFLEIIEKALKEKQMGCTWLIGTLGIAKRDENLARFRTDPNCNILL 641

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G++L+   N +      W+     Q ++R+      + G    V VY    Q
Sbjct: 642 GSIQAAGVGIDLRCAQN-VYMMEPNWNPAMENQAVDRL-----YRLGQTNEVHVYRYYVQ 695

Query: 174 NTIDELVLQR 183
            +++  + Q 
Sbjct: 696 GSLEMNIHQA 705


>gi|21356675|ref|NP_651398.1| XNP, isoform B [Drosophila melanogaster]
 gi|24650076|ref|NP_733107.1| XNP, isoform A [Drosophila melanogaster]
 gi|17366808|sp|Q9GQN5|ATRX_DROME RecName: Full=Transcriptional regulator ATRX homolog; AltName:
            Full=ATP-dependent helicase XNP; AltName: Full=X-linked
            nuclear protein; AltName: Full=d-xnp; AltName: Full=dXNP
 gi|7301343|gb|AAF56471.1| XNP, isoform A [Drosophila melanogaster]
 gi|16198065|gb|AAL13821.1| LD28477p [Drosophila melanogaster]
 gi|23172300|gb|AAN14055.1| XNP, isoform B [Drosophila melanogaster]
 gi|220947590|gb|ACL86338.1| XNP-PA [synthetic construct]
          Length = 1311

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNE---GKIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 944  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLG 1003

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1004 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1057

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1058 RQVAKQATAKRVID 1071


>gi|157108127|ref|XP_001650089.1| helicase [Aedes aegypti]
 gi|108879396|gb|EAT43621.1| helicase [Aedes aegypti]
          Length = 1433

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
               K + L+ I+ K  A+   +++       +  ++              G T  ++   
Sbjct: 929  ASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLDGTTKAEERGD 988

Query: 101  I-QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++N    +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 989  LLKKFNCKNSEYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAH 1042

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1043 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1082


>gi|291239595|ref|XP_002739708.1| PREDICTED: brahma-like protein [Saccoglossus kowalevskii]
          Length = 1523

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 52   HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPC 99
               K + L+ I+ K  A     ++     + +  L+  F           G T  D    
Sbjct: 982  SSGKFELLDRILPKLKACNHKALLFSQMTTLMTILEDYFAHRGFRYLRLDGTTKSDDRAK 1041

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ +N    P  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1042 LLEMFNAPGSPYNIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA-----QDRAH 1095

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G K  V V  L+  N+++E +L   R K
Sbjct: 1096 RIGQKSEVRVLRLLTVNSVEEKILAAARYK 1125


>gi|225432366|ref|XP_002275787.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736902|emb|CBI26103.3| unnamed protein product [Vitis vinifera]
          Length = 1080

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   E   
Sbjct: 442 QLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLI 501

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP- 98
                  +    +   K   + +++       L  L+              G T  +D  
Sbjct: 502 TNSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 561

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 562 ASIDAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 615

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 616 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 655


>gi|119478779|ref|XP_001259438.1| DNA excision repair protein (Rad5), putative [Neosartorya fischeri
            NRRL 181]
 gi|119407592|gb|EAW17541.1| DNA excision repair protein (Rad5), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1245

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 58/186 (31%), Gaps = 50/186 (26%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA--------------RLQKAFPQ----- 90
               KI AL   + +  AN   + V   F S L               RL    PQ     
Sbjct: 1041 TSAKIHALINHLSRVPANTKSV-VFSQFTSFLDLIGPQLTKAGISYVRLDGTMPQKARAE 1099

Query: 91   -----GRTLDKDPCTIQEWNEGKIP-----------------LLFAHPASCGHGLNLQYG 128
                  RT   D   I E      P                 +L     + G GLNL   
Sbjct: 1100 VLAEFSRTETFDQEEIDEDEGPDTPRVRISSKNSRSSTKSPTVLLISLRAGGVGLNLTAA 1159

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N+ +    WW      Q I+R+      + G  R V V   I +++I+  +L+    K 
Sbjct: 1160 SNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVSVTRFIVKDSIEGRMLRVQERKM 1213

Query: 189  TIQDLL 194
             I   L
Sbjct: 1214 NIAGSL 1219


>gi|10438729|dbj|BAB15325.1| unnamed protein product [Homo sapiens]
          Length = 757

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 20  AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 79

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   W+ +   Q   R       + G  +AV VY LI +
Sbjct: 80  LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQSKAVKVYRLITR 133

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 134 NSYEREMFDKASLKLGLDKAVLQDINRKG 162


>gi|322701736|gb|EFY93485.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1158

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 34/207 (16%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIEKANAA- 69
            + +L+ ++++A +      K   +      YD           K KAL E +++   A+ 
Sbjct: 942  FVELRRDDVDAEHDGPAKTKAKDIRKRFDKYD-------GPHTKTKALVEDLLKSKAASQ 994

Query: 70   --------PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK-IP 110
                      +V   + S L  ++ A               T       ++++ E   + 
Sbjct: 995  AYPDEPPFKSVVFSGWTSHLDLIELALKAAGITFVRLDGSMTRTARTAAMEKFREDNTVD 1054

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            ++     + G GLNL   GN +      ++     Q I+R+      + G KR V     
Sbjct: 1055 VILVSIMAGGLGLNLT-AGNTVYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVRTIRY 1108

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I  ++ +E +L+    K  +  L ++ 
Sbjct: 1109 IMHDSFEEKMLELQEKKMKLASLSMDG 1135


>gi|147845330|emb|CAN81246.1| hypothetical protein VITISV_014031 [Vitis vinifera]
          Length = 716

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT-------------- 100
           A    +++   +   L  ++  F +            R  ++                  
Sbjct: 464 ARKHKVLIFSQWTKILDIMEYYFSEKGLEVCRIDGSVRLDERKRQVPPIFIVTVVLEACF 523

Query: 101 -----IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I+E+N       +      + G G+NL    +  + +   W+ +   Q ++R   
Sbjct: 524 FLTVLIEEFNDMNSNCRVFLLSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC-- 580

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G  + V VY L    +I+  +L+R  +K  ++ +++
Sbjct: 581 ---HRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVI 619


>gi|11870012|gb|AAG40586.1|AF217802_1 xnp/atr-x DNA helicase [Drosophila melanogaster]
          Length = 1311

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNE---GKIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 944  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLG 1003

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1004 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1057

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1058 RQVAKQATAKRVID 1071


>gi|325114960|emb|CBZ50516.1| snf2 family N-terminal domain-containing protein, related [Neospora
            caninum Liverpool]
          Length = 1630

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 71/186 (38%), Gaps = 23/186 (12%)

Query: 29   TVKCLQLANGAVYYDEE---KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
             ++  ++AN    + +E            K + L+ ++ K       +++       L  
Sbjct: 1032 LMQLRKIANHPYLFVDEYLLNEDLVRVAGKFECLDRMLPKLLHFKHKVLIFSQMTQVLDL 1091

Query: 84   LQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
            + +                 L +    + E+N  ++   +      + G GLNLQ   + 
Sbjct: 1092 MAEYMHLRGYKFARLDGSVGLTERKERMAEFNNAEVDTMIFMLSTRAGGLGLNLQ-AADT 1150

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ F   ++  +  Q +      R  + G  + V V+ L+  + ++E++L++   K  I 
Sbjct: 1151 VILFDSDFNPHQDLQAM-----CRAHRLGQTKQVKVFRLVTISGVEEIILEKANRKLNID 1205

Query: 192  DLLLNA 197
             +++ A
Sbjct: 1206 QMVIQA 1211


>gi|297271008|ref|XP_002800208.1| PREDICTED: probable global transcription activator SNF2L2-like
           [Macaca mulatta]
          Length = 1173

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 649 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 708

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 709 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 762

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 763 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 802


>gi|213408667|ref|XP_002175104.1| SHREC complex subunit Mit1 [Schizosaccharomyces japonicus yFS275]
 gi|212003151|gb|EEB08811.1| SHREC complex subunit Mit1 [Schizosaccharomyces japonicus yFS275]
          Length = 1366

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 74/202 (36%), Gaps = 25/202 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y +   +     +        +++K +    L    +   E+ H      + I  L  I
Sbjct: 834  IYSQDVEDRTLSAELSIRSMEEASAKMLLLRILVPKLI---EKNHRILFFSQFIMQL-DI 889

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEW--NEGKIPLLFAHPASC 119
            +E            F  D   ++ A   G T + D    I  +   +  +        + 
Sbjct: 890  LED----------WF--DAKNIKYARFDGTTSESDRQNAIDAFCRKDSDLTCFLLSTRAG 937

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    + ++     ++  +  Q I R       + G K  V V+ L+ +N+++E 
Sbjct: 938  GVGINL-AKADTVIILDPDFNPHQDMQAIAR-----AHRFGQKNNVTVFQLMIRNSVEEK 991

Query: 180  VLQRLRTKSTIQDLLLNALKKE 201
            ++Q  R K  +  L++  + K+
Sbjct: 992  IVQVARRKLLLDHLIVETMDKD 1013


>gi|301615850|ref|XP_002937382.1| PREDICTED: helicase-like transcription factor [Xenopus (Silurana)
           tropicalis]
          Length = 956

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 32/187 (17%)

Query: 29  TVKCLQLA-------NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHF 77
           +++  QL        + ++    E++W  +   KI AL   +            IV   F
Sbjct: 750 SLRLDQLVECPQEDLDSSINKKLEQNW--MCSTKINALMHALVDQRRKDATVKSIVVSQF 807

Query: 78  NSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLN 124
            S L+ ++ A  +            T  K    IQ +         ++     + G GLN
Sbjct: 808 TSFLSVIEVALRESGFMFTRLDGSMTQKKRTEAIQSFQRPDAQSPTIMLLSLKAGGVGLN 867

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + +      W+    +Q  +R       + G  + V V   + +N+++E +L+  
Sbjct: 868 LT-AASRVFLMDPAWNPAAEEQCFDRC-----HRLGQTKKVIVTKFVVRNSVEENMLKIQ 921

Query: 185 RTKSTIQ 191
             K  + 
Sbjct: 922 SKKRELA 928


>gi|225465567|ref|XP_002263799.1| PREDICTED: similar to SNF2 domain-containing protein, putative,
            expressed [Vitis vinifera]
          Length = 1505

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 36/188 (19%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-------------KAF 88
            E  + +  +  K+  L  I+          +V     S L  ++             K +
Sbjct: 1125 ENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEYYLSKLSRQGKKGKCW 1184

Query: 89   PQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             QG+   +             ++ +N+    ++        +   G+NL +  N ++   
Sbjct: 1185 KQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINL-HSANRVIIVD 1243

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+     Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++
Sbjct: 1244 GSWNPTYDLQAI-----YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1298

Query: 197  ALKKETIH 204
               ++ +H
Sbjct: 1299 ---RQQVH 1303


>gi|156230803|gb|AAI51850.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [synthetic construct]
          Length = 1647

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAWGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 1191

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|195019167|ref|XP_001984924.1| GH16759 [Drosophila grimshawi]
 gi|193898406|gb|EDV97272.1| GH16759 [Drosophila grimshawi]
          Length = 1716

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N     + +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1216 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1269

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1270 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1314


>gi|302143565|emb|CBI22318.3| unnamed protein product [Vitis vinifera]
          Length = 1477

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 36/188 (19%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ-------------KAF 88
            E  + +  +  K+  L  I+          +V     S L  ++             K +
Sbjct: 1097 ENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEYYLSKLSRQGKKGKCW 1156

Query: 89   PQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             QG+   +             ++ +N+    ++        +   G+NL +  N ++   
Sbjct: 1157 KQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINL-HSANRVIIVD 1215

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+     Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++
Sbjct: 1216 GSWNPTYDLQAI-----YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1270

Query: 197  ALKKETIH 204
               ++ +H
Sbjct: 1271 ---RQQVH 1275


>gi|212529790|ref|XP_002145052.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074450|gb|EEA28537.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 852

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 93  TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+D    +++++    +I +L A   + G GL++    N  +    WW+    QQ   R+
Sbjct: 718 TIDDRDRSLKDFQALPEIKILIASLKAGGVGLDIT-AANKCILVEPWWNDAIQQQAFCRL 776

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G +R V +  L+A+NTID+ +++    K
Sbjct: 777 F-----RIGQERDVEIVKLVAKNTIDDYMMKLQEMK 807


>gi|169854907|ref|XP_001834125.1| hypothetical protein CC1G_08756 [Coprinopsis cinerea okayama7#130]
 gi|116504825|gb|EAU87720.1| hypothetical protein CC1G_08756 [Coprinopsis cinerea okayama7#130]
          Length = 922

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 19/166 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEG 107
              K+  L   +++        I    + S L  L+K   +   RTL  D    +   E 
Sbjct: 730 ASAKMLKLVEYLKEWDDTGDKTICYSQWTSMLDLLEKLLSRHGIRTLRFDGQMDRAAREY 789

Query: 108 KIP---------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I          ++         GLNL    N +V   L W+     Q  +R       +
Sbjct: 790 AISSFKRAGGPKVMLISTRCGSVGLNLVM-ANRIVNMDLSWNYAAESQAYDRC-----HR 843

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            G  + VFV  L+ +NTI+E +L+    K  + +  L       +H
Sbjct: 844 IGQDKDVFVKRLVVENTIEERMLRLQDVKVGLAEAALGEGSGAKLH 889


>gi|168060035|ref|XP_001782004.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162666495|gb|EDQ53147.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1445

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 37  NGAVYYDEEKHWK--EVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQ------- 85
            G    ++    +   +   K+  L+ ++ +       +++       L  L        
Sbjct: 712 GGDANTNDNNKIQRIVLSSGKLAILDKLLVRLKETKHRVLIFSQMVKMLDILADYLSLRG 771

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +        D     ++ +N    +         + G G+NL    + ++ F   W+
Sbjct: 772 FQFQRLDGSTRADLRHQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWN 830

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +   Q + R       + G +  V +Y  +   +++E +L+R + K     L+L
Sbjct: 831 PQNDLQAMSR-----AHRIGQRDVVNIYRFVISRSVEEDILERAKKKMASSKLIL 880


>gi|194382982|dbj|BAG59047.1| unnamed protein product [Homo sapiens]
          Length = 960

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 649 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 708

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++NE   +  +      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 709 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPHQDLQA-----QDRAH 762

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 763 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 802


>gi|195442878|ref|XP_002069173.1| GK23635 [Drosophila willistoni]
 gi|194165258|gb|EDW80159.1| GK23635 [Drosophila willistoni]
          Length = 1720

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N       +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1220 EDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1273

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1274 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1318


>gi|170588595|ref|XP_001899059.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158593272|gb|EDP31867.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1207

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 62  IIEKA--NAAPIIVAYHFNSDLARLQK------------------------AFPQGRTLD 95
           IIE+A  N   +++       L ++++                         F    T  
Sbjct: 803 IIEQAVLNGEKVLLFSQSLLTLNQIERFLETSSSVTVGNEKLRWKKSINYYRFDGSTTAT 862

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I  +N +  I L      +   G+NL    + ++ F   W+     Q + RI   
Sbjct: 863 EREKLINRFNQDPNILLFLISTRAGSLGINL-VSASRVIIFDASWNPCHDAQAVCRI--- 918

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G KR  +VY LI  N+++  +  R   K+ +Q  +++
Sbjct: 919 --YRYGQKRRTYVYRLIMDNSMERAIFSRQIGKNGLQQRVVD 958


>gi|224071533|ref|XP_002303505.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840937|gb|EEE78484.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2327

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++        +++       L  L+            +      ++   
Sbjct: 1059 ASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVSDR 1118

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1119 QTAIARFNQDKSRFVFLLSTRSCGLGINL-ASADTVIIYDSDFNPHSDIQAMNR-----A 1172

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  R K  +  L +N
Sbjct: 1173 HRIGQSKRLLVYRLVVRASVEERILQLARKKLVLDQLFVN 1212


>gi|123415533|ref|XP_001304706.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121886177|gb|EAX91776.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 572

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 63  IEKANAAPIIVAYHFNS--DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASC 119
            E   A  +I+ Y   +  D   +Q  F     + ++   I+E+++   P L  A   + 
Sbjct: 393 CESEEAINMIIKYVIPTLVDTEYIQ--FSSSTDIAENAKKIEEFSKEDGPDLFIATTTAA 450

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            HG+NL    +I++FF L W+ +   Q  +R+      +    + V ++ ++  +TID+ 
Sbjct: 451 AHGINLT-SASIVIFFELNWNPKIDLQAEDRV-----HRLTQTKTVDIFKIVMIDTIDQR 504

Query: 180 VLQRLRTKSTIQDLLL 195
           +++    K  I + ++
Sbjct: 505 IIEAQERKDKIANGVI 520


>gi|255716748|ref|XP_002554655.1| KLTH0F10406p [Lachancea thermotolerans]
 gi|238936038|emb|CAR24218.1| KLTH0F10406p [Lachancea thermotolerans]
          Length = 765

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 52  HDEKIKAL-EVIIE-KANAAPI--IVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              KI+AL E +   +++   I  IV   F S L  ++    +            T  + 
Sbjct: 592 SSTKIEALVEELYNLRSDRRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 651

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI+ +       +      + G  LNL     + +    WW+     Q  +R+     
Sbjct: 652 DQTIKYFMENTHCEVFLVSLKAGGVALNLCEASQVFIM-DPWWNPSVEWQSGDRV----- 705

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V +     +++I+  +++    K+ +    +N
Sbjct: 706 HRIGQYRPVKITRFCIEDSIESRIIELQEKKANMIHATIN 745


>gi|296812409|ref|XP_002846542.1| transcription termination factor 2 [Arthroderma otae CBS 113480]
 gi|238841798|gb|EEQ31460.1| transcription termination factor 2 [Arthroderma otae CBS 113480]
          Length = 1166

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   +  +  PI  ++   + S L  ++ A  +       
Sbjct: 981  LYEGPHTKTKALISSLLDTAEENKKSPHEPPIKSVIFSSWTSHLDLIEVALEENGLTGYA 1040

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +    I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1041 RLDGTMSLKQRNSAIETFSKDDDVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPATIA 1099

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q I+R+      + G  R V     I +++I+E + +  + K  + D+ LN
Sbjct: 1100 QAIDRV-----HRIGQTREVTTIQYIMKDSIEEKITELAKRKQRLADMSLN 1145


>gi|241634353|ref|XP_002410509.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503438|gb|EEC12932.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1597

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++D     I+ +N+   P   L      +   G NL  G N +V     W+   
Sbjct: 1254 RMDGSTSVDLRKRWIEMFNDESNPRGRLFLISTKAGSLGTNL-VGANRVVLMDASWNPTH 1312

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q I R+      + G K+ VF+Y  +AQ T++E +  R  TK ++   +++
Sbjct: 1313 DVQAIFRV-----YRFGQKKPVFIYRFLAQGTMEEKIYDRQVTKQSLACRVVD 1360


>gi|312217906|emb|CBX97853.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1064

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 51   VHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
            +   KI+     L  I E   +   ++   F S L  ++          + +     +D+
Sbjct: 888  IPSAKIEKTMALLAEIAENDPSEKTLIFSQFTSLLDLVEVPLSQRKIRYQRYDGSMKMDE 947

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  + ++    ++     +   GLNL     ++V    +W+     Q ++R     
Sbjct: 948  RADAVNAFMDDPDENVMLVSLKAGNAGLNLWKASQVIVL-DPFWNPFIEDQAVDR----- 1001

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +    R V V+ ++   T+++ +      K  I    L+
Sbjct: 1002 AHRMPQPREVHVHRVLVPETVEDRICVLQDKKREIIGAALD 1042


>gi|308489133|ref|XP_003106760.1| CRE-CSB-1 protein [Caenorhabditis remanei]
 gi|308253414|gb|EFO97366.1| CRE-CSB-1 protein [Caenorhabditis remanei]
          Length = 918

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQE 103
            +        K+ ++       N   ++  +      +R++ A   G T     P  I++
Sbjct: 482 NRVIFFTQRRKVVSMMEYFLDQNRYELVTYFRRMKKNSRIRHASLTGSTTAAARPKIIKK 541

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + E   I +      + G GLNL    N ++ F   W+ +   Q   RI      + G +
Sbjct: 542 FEEDTDIKVFLMTTRAGGLGLNLTC-ANKVIIFDPDWNPQADNQAKNRI-----YRMGQE 595

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +  LI+  T+++    +   K  +   LL
Sbjct: 596 NDVSIVRLISNGTLEDRKFFKQVQKEMLAAQLL 628


>gi|312072073|ref|XP_003138899.1| hypothetical protein LOAG_03314 [Loa loa]
 gi|307765938|gb|EFO25172.1| hypothetical protein LOAG_03314 [Loa loa]
          Length = 1156

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 33/162 (20%)

Query: 62  IIEKA--NAAPIIVAYHFNSDLARLQK------------------------AFPQGRTLD 95
           IIE+A  N   +++       L ++++                         F    T  
Sbjct: 752 IIEQAVMNGEKVLLFSQSLLTLNQIERFLETSSSVTVGNEKLHWKRNTNYYRFDGSTTAT 811

Query: 96  KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I  +N    I L      +   G+NL    + ++ F   W+     Q + RI   
Sbjct: 812 ERERLISRFNRDHNIFLFLISTRAGSLGINL-VSASRVIIFDASWNPCHDAQAVCRI--- 867

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G KR  +VY LI  N+++  +  R   K+ +Q  +++
Sbjct: 868 --YRYGQKRRTYVYRLITDNSMERAIFSRQIGKNGLQQRVVD 907


>gi|88811008|ref|ZP_01126264.1| helicase, Snf2 family protein [Nitrococcus mobilis Nb-231]
 gi|88791547|gb|EAR22658.1| helicase, Snf2 family protein [Nitrococcus mobilis Nb-231]
          Length = 572

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 69/181 (38%), Gaps = 22/181 (12%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQK 86
           + C+++     Y  +++        K++ L  I+++  A P   I+V   +   L  +++
Sbjct: 132 LACMRMLCDTPYILDQECRV---SPKLEELGRILDEQLAEPESKIVVFSEWTRRLELVRE 188

Query: 87  AFPQG----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             ++    I  + +     L     +   GLNLQ   N+++   
Sbjct: 189 HVETAAFGYALHTGKVPQERRRQEINRFKQDPACRLLLSSDAGATGLNLQ-AANVVINLD 247

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L W     +  I R     QR+      V V  L+ +++I+  +L  L  K ++ + +L 
Sbjct: 248 LPWSPARLEPRIARAWRKHQRRH-----VSVINLVCEDSIEHRILHLLEQKRSLAEGVLE 302

Query: 197 A 197
            
Sbjct: 303 G 303


>gi|224125208|ref|XP_002329920.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222871157|gb|EEF08288.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2332

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++        +++       L  L+            +      ++   
Sbjct: 1060 ASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILEDYLTIEFGPKTYERVDGSVSVSDR 1119

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1120 QTAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1173

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1174 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1213


>gi|289621667|emb|CBI51578.1| unnamed protein product [Sordaria macrospora]
          Length = 1136

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
            L  +     +   I+   F + L     RL++A      LD      Q            
Sbjct: 973  LHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASINHFMKNV 1032

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +        + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 1033 DVECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQSRPCTI 1086

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ + +  +NA
Sbjct: 1087 TRLCIEDSVESRMVLLQEKKTNMINSTINA 1116


>gi|195573901|ref|XP_002104930.1| GD18194 [Drosophila simulans]
 gi|194200857|gb|EDX14433.1| GD18194 [Drosophila simulans]
          Length = 1098

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+           ++     +++N     +  L      + G G
Sbjct: 944  YEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLG 1003

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1004 INL-VAANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYE 1057

Query: 183  RLRTKSTIQDLLLN 196
            R   K      +++
Sbjct: 1058 RQVAKQATAKRVID 1071


>gi|194886128|ref|XP_001976555.1| GG19952 [Drosophila erecta]
 gi|190659742|gb|EDV56955.1| GG19952 [Drosophila erecta]
          Length = 1717

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N    + L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 1067 ERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1122

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  FVY ++    +++ +  R   K  + D +++
Sbjct: 1123 --YRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVD 1162


>gi|189423365|ref|YP_001950542.1| non-specific serine/threonine protein kinase [Geobacter lovleyi SZ]
 gi|189419624|gb|ACD94022.1| Non-specific serine/threonine protein kinase [Geobacter lovleyi SZ]
          Length = 641

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 28/206 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN-----GAVYYDEEKHWKEVHDEKIK 57
            Y + +  +  +          S     +           G    D  +H    +   I+
Sbjct: 417 MYEQVRLAIIEEYGKSA-----SLVSLQRLRMFCTHPLLAGFALADPTEHM-PKYQRLIE 470

Query: 58  ALEVIIEKANAAPIIVAY-----HFNSDLA-RLQK---AFPQGRTLDKDPCTI-QEWN-E 106
            LE I  +     I   Y         DL+ R       F  GR    D  TI   ++  
Sbjct: 471 LLEEIFSRREKCLIFTGYTGMTDILMHDLSKRFVDQYFNFIDGRVPVPDRQTIVDAFSIS 530

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                L  +P + G GLN+    N ++ ++  W+     Q   R       +    R V 
Sbjct: 531 PTSGALILNPRAAGVGLNIT-AANHVIHYNPEWNPALEDQASAR-----AYRRKQTRPVT 584

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           V+ L   ++++E+V+ RL+ K  + +
Sbjct: 585 VHQLYFVDSVEEVVVGRLKLKRGLSE 610


>gi|62484263|ref|NP_611885.3| CG4049 [Drosophila melanogaster]
 gi|61678334|gb|AAF47165.3| CG4049 [Drosophila melanogaster]
          Length = 1669

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N    + L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 1026 ERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1081

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  FVY ++    +++ +  R   K  + D +++
Sbjct: 1082 --YRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVD 1121


>gi|256389644|ref|YP_003111208.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
 gi|256355870|gb|ACU69367.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
          Length = 727

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTI 101
              K++ L  I+++A  N+  ++V  +F   L  + +A                     +
Sbjct: 540 TSAKLRRLVEIVDEAEANSRKVVVFSYFRDVLDTVCRALGDRASGPLTGSMQPQHRQELV 599

Query: 102 QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +   K   +L +   + G GLN+Q   ++++            Q I R       + G
Sbjct: 600 DAFTAAKKHAVLVSQIQAGGVGLNMQ-AASVVILCEPQVKPTLETQAIAR-----AHRMG 653

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R V V+ L+  +++D+ +L+ L  KS + D 
Sbjct: 654 QIRRVQVHRLLVADSVDQRMLEILDAKSGLFDA 686


>gi|326479937|gb|EGE03947.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1838

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  II+++      I++   +   L+ L         +     G+T +     
Sbjct: 1310 NSHRTQMVGQIIDESIKAGDKILIFSGYLHTLSYLGSMLGARGHKYCRLDGKTPIATRQA 1369

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +  + +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1370 ATRDFRDSDVHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1423

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1424 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMALRAID 1460


>gi|242045708|ref|XP_002460725.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
 gi|241924102|gb|EER97246.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
          Length = 614

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
              K+  L  +++  +     +++       L  L+            +      ++ + 
Sbjct: 287 ASAKLALLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLTLEFGPKTFERVDGSVSVAER 346

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 347 QAAIARFNQDKTRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 400

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 401 HRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 440


>gi|18606477|gb|AAH23186.1| Smarca4 protein [Mus musculus]
          Length = 563

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 27  ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 86

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + + +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q        R  
Sbjct: 87  LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA-----QDRAH 140

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 141 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 180


>gi|242023503|ref|XP_002432172.1| Homeotic gene regulator, putative [Pediculus humanus corporis]
 gi|212517560|gb|EEB19434.1| Homeotic gene regulator, putative [Pediculus humanus corporis]
          Length = 1504

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N       L      + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 1051 EDRGELLRKFNSKDSEYFLFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA----- 1104

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1105 QDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1149


>gi|321468268|gb|EFX79254.1| hypothetical protein DAPPUDRAFT_188325 [Daphnia pulex]
          Length = 1009

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNIL 132
            FN D  RL         L K+ C    +N        L      + G G+NL    N +
Sbjct: 787 RFNHDYFRLDG--QTSAELRKNAC--NAFNNPSNLRSRLFLISTKAGGLGINL-VAANRV 841

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + F   W+     Q I R+      + G K+  ++Y  +AQ T++E +  R  TK ++  
Sbjct: 842 IIFDASWNPSHDVQSIFRV-----YRFGQKKPCYIYRFLAQGTMEEKIYDRQVTKLSLSC 896

Query: 193 LLLN 196
            +++
Sbjct: 897 RVVD 900


>gi|209875457|ref|XP_002139171.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209554777|gb|EEA04822.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 838

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K++ L V++    A    I++       L  ++      + +            +   
Sbjct: 619 SMKLQILWVLVPALTARGHKILIFSESLDMLNLIELTILTPKQIKWIKLEGKVPKKQRIS 678

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +I+ +NE   I +L         GLNL    + ++     W+  +  Q I R       +
Sbjct: 679 SIRSFNEQKDILVLLLSKQIGSVGLNLTT-ADRIIIVDPHWNPAQDDQAIGR-----AFR 732

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G K  V VY LI+   I++   +    K+ I    L+  K++ 
Sbjct: 733 IGQKEDVVVYRLISSGAIEDWKFRLQIHKAGIAHFFLHGQKQKV 776


>gi|325120775|emb|CBZ56330.1| hypothetical protein NCLIV_067550 [Neospora caninum Liverpool]
          Length = 2638

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC---T 100
            K   L+V++         +++       L  L+              G T  ++     T
Sbjct: 1580 KFAMLDVLLPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLT 1639

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +      +  +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G
Sbjct: 1640 LYNQEGSEYFIFILSTKAGGLGVNLQ-SADTVIIFDSDWNPQNDEQA-----QSRAHRIG 1693

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V     I+  +I+E +LQR   K     L++ +
Sbjct: 1694 QKKEVLTLRFISVESIEEQILQRAECKLDRDKLVIQS 1730


>gi|302676696|ref|XP_003028031.1| hypothetical protein SCHCODRAFT_60278 [Schizophyllum commune H4-8]
 gi|300101719|gb|EFI93128.1| hypothetical protein SCHCODRAFT_60278 [Schizophyllum commune H4-8]
          Length = 765

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKA 58
           +++Y    + +  D+  +  + +   + ++  LQ  +      + +E   K +   K   
Sbjct: 434 IERYADLNKRVMKDIYADEGKRYK-LTYSLAILQRDMCGKLDQWYKEGSNKVLIFTKSLK 492

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPA 117
           L  ++E          +H   D    +K              I E+NE  ++        
Sbjct: 493 LMEVLE----------FHMKRDSYEFRK-LDGSVPQKYRQKYIDEFNEQPEVFCFLISTL 541

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    N +V F   W+     Q ++R       + G  R V+VY L+   +++
Sbjct: 542 AGGTGINLT-AANKVVIFDPNWNPAHDLQAMDR-----AFRYGQTRDVYVYRLLGGGSLE 595

Query: 178 ELVLQRLRTKS 188
           ELV  R   K 
Sbjct: 596 ELVYARQLYKQ 606


>gi|299470303|emb|CBN78353.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1972

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 33/206 (16%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDE----------KI 56
            + E+   ++ E+       +  V   +  N   +  D E+   E   +          K+
Sbjct: 1218 EDEMAAVVKREDEHYQKLMTLLVHLRKACNHPHMLVDVERSVGETESQTVDYTVAASGKL 1277

Query: 57   KALEVIIE--KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEW 104
              L+ ++   +A     ++   F S L  LQ     + +  GR  +           + +
Sbjct: 1278 ALLDRMLPRLQAKGHRCLILSQFASMLDILQDLCLARGYEHGRLDESTSSPQTRLDARRF 1337

Query: 105  NEG--KIPLLFAHPASCGH--GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            N    K+ +L       G   GLNL    + ++ +   W+ +   Q IER+      + G
Sbjct: 1338 NAPESKVSVLLVPTRMTGASGGLNLT-AADTVILYDSHWNPQVDLQAIERV-----HRIG 1391

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRT 186
              + V V+ L+ + +++E ++   R 
Sbjct: 1392 QSKPVKVFRLLCRRSVEERIVAERRR 1417


>gi|315648445|ref|ZP_07901544.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315276139|gb|EFU39485.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 585

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I++ N   +IV   + +    L   F        P    +++     + 
Sbjct: 375 ANTKAEKTIELIQQMNEK-VIVFTEYRATQEYLLNYFRDHGLVSVPYRGGMNRGKKDWMM 433

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   GK  ++ A   + G G+NLQ+  + +V F L W+    +Q I R+      + G  
Sbjct: 434 DLFRGKAQVMIA-TEAGGEGINLQF-CHHMVNFDLPWNPMRVEQRIGRV-----HRLGQT 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 NDVQIFNLSTSGTIEEHILNLLHEKINMFEMVIGGL 522


>gi|297828221|ref|XP_002881993.1| hypothetical protein ARALYDRAFT_483627 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327832|gb|EFH58252.1| hypothetical protein ARALYDRAFT_483627 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 873

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 42/229 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKHWKE 50
           K Y    R+    L   +    N  S     +QL  A    Y         ++E +H  +
Sbjct: 311 KIYTSILRKELPGLLALSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQ 370

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEW 104
               K+  L+ ++++ +     +++     S L  LQ      R     LD      + +
Sbjct: 371 -ASGKLFVLDQLLKRLHDIGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERF 429

Query: 105 ------------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                             +     +      + G GLNL    + ++F+   W+ +  +Q
Sbjct: 430 AAIKNFSAKSERGLDSEVDASNAFVFMISTRAGGVGLNL-VAADTVIFYEQDWNPQVDKQ 488

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++R       + G    V    L+ +++++E++L+R   K  +   ++
Sbjct: 489 ALQR-----AHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 532


>gi|254244620|ref|ZP_04937942.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
 gi|126197998|gb|EAZ62061.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
          Length = 666

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 502 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDR 561

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 562 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 615

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 616 RMVVVKIPLVEATIDEQLWQLLNAKRQVAQDLIE 649


>gi|145362201|ref|NP_973689.2| transcription regulatory protein SNF2, putative [Arabidopsis
           thaliana]
 gi|330255399|gb|AEC10493.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 877

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 48/232 (20%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKH 47
           K Y    ++EL    +L        N  S     +QL  A    Y         ++E +H
Sbjct: 315 KIYTSILRKELPGLLELSSG---GSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEH 371

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTI 101
             +    K+  L+ ++++ +     +++     S L  LQ      R     LD      
Sbjct: 372 LVQ-ASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAE 430

Query: 102 QEWNE------------------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + +                        +      + G GLNL    + ++F+   W+ + 
Sbjct: 431 ERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNL-VAADTVIFYEQDWNPQV 489

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Q ++R       + G    V    L+ +++++E++L+R   K  +   ++
Sbjct: 490 DKQALQR-----AHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 536


>gi|254238775|ref|ZP_04932098.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
 gi|126170706|gb|EAZ56217.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
          Length = 676

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 502 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGLGCVTLVGNDSLTKRQKAIDR 561

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 562 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 615

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 616 RMVVVKIPLVEATIDEQLWQLLNAKRQVAQDLIE 649


>gi|193671687|ref|XP_001946103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Acyrthosiphon pisum]
          Length = 848

 Score = 81.9 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC 99
           +   K K L  I+         +++   F   L  L+              G T  ++  
Sbjct: 668 LDSGKFKLLNEILPDLKDRGHRVLIFSQFLQILDLLEIYMSHYGHSYLRLDGSTQVQERQ 727

Query: 100 -TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N  + +        + G G+NL     +++   + ++    +Q  +R       
Sbjct: 728 LMIDLYNMDESLFAFLLSTKAGGLGINLTAADTVIIH-DIDYNPYNDKQAEDRC-----H 781

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V   I++++++E + +  + K  ++  +
Sbjct: 782 RVGQTKPVKVIKFISKDSVEESMFKVAQDKLNLEQQV 818


>gi|241707025|ref|XP_002412008.1| steroid receptor-interacting snf2 domain protein, putative [Ixodes
           scapularis]
 gi|215505018|gb|EEC14512.1| steroid receptor-interacting snf2 domain protein, putative [Ixodes
           scapularis]
          Length = 1055

 Score = 81.5 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTLDK------------- 96
           +  K   L  I+E+       ++V     S L  +++   Q     +             
Sbjct: 574 NSHKFLVLMTILEQTLGVGDKLLVFSQSLSTLDLVERFLGQREVPLRPGLPHGDKWARGR 633

Query: 97  -------------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                            I E+N    + L      +   G+NL  G N +V     W+  
Sbjct: 634 NYFRLDGSTSAQEREKLINEYNANAGVSLFLLSTRAGCLGINLT-GANRIVVLDASWNPC 692

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Q + RI      + G  +   +Y L+  N +++ +  R   K  + D +++ +  E 
Sbjct: 693 HDAQAVCRI-----YRYGQAKPCHIYRLVCDNCLEKRIYDRQVNKQGMSDRVVDEMNPEA 747


>gi|302309993|ref|XP_451940.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|199424832|emb|CAH02333.2| KLLA0B09240p [Kluyveromyces lactis]
          Length = 798

 Score = 81.5 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 23/168 (13%)

Query: 44  EEKHWKEVHDEKIKAL-EVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGR------- 92
               W+     KI+AL E +    +       IV   F S L  ++    +         
Sbjct: 619 MGGKWR--SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQ 676

Query: 93  ---TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              T  +   TI+ + E     +      + G  LNL     + +    WW+     Q  
Sbjct: 677 GSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFIL-DPWWNPSVEWQSG 735

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +R+      + G  R V +     +++I+  +++    K+++    +N
Sbjct: 736 DRV-----HRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATIN 778


>gi|195172271|ref|XP_002026922.1| GL12824 [Drosophila persimilis]
 gi|194112690|gb|EDW34733.1| GL12824 [Drosophila persimilis]
          Length = 237

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++++N     I +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 25  EDRGELLRKFNAKGSDIFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 78

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 79  QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 123


>gi|70943765|ref|XP_741890.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520554|emb|CAH80365.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 644

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
           K    V+  K++ L   I++   N   ++V   +   L  ++K           +    T
Sbjct: 435 KKDNFVYSTKLRILFDHIKEDIKNELHVVVFSQWIGFLKIIEKLLTLHEIPNKIYDGSLT 494

Query: 94  LDKDPCTIQEWN--EGKI---------------------PLLFAHPASCGHGLNLQYGGN 130
            ++   T+  +N  +GK+                      +L     + G GLNL    +
Sbjct: 495 YEQRKSTLYWFNIQKGKVYQPGIGFCQSTSDIPIENKSGKVLLCSLKAGGVGLNLTVS-S 553

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +    LWW+     Q  ERI      + G  + V +Y  + + T++E +LQ  ++K   
Sbjct: 554 KVYLMDLWWNPAIEDQAFERI-----HRIGQLKDVNIYKFVLEKTVEERILQIHQSKQYT 608

Query: 191 QDLLLNAL 198
            +  L  +
Sbjct: 609 ANQCLAQV 616


>gi|325181157|emb|CCA15572.1| CHROMODOMAIN HELICASE DNA BINDING putative [Albugo laibachii Nc14]
          Length = 1918

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW--NEGKIPLLFA 114
               +++   F   L  LQ          +      T ++    I  +     +  ++  
Sbjct: 785 GGHRVLIFSQFKIMLDILQDYLSLRGFKFERIDGNITGNERQAAIDRYCGTSNQAFVMLI 844

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ +   W+ +   Q   R       + G  ++V +Y L+   
Sbjct: 845 STRAGGVGINLT-AADTVIIYDSDWNPQNDLQAQARC-----HRIGQTKSVKIYRLLTSK 898

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T +  +  +   K  +  ++L  ++
Sbjct: 899 TYELQMFHQASIKLGLDQVVLGGMQ 923


>gi|324500543|gb|ADY40253.1| ATP-dependent helicase brm [Ascaris suum]
          Length = 1261

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
           K + L+ I+ K       +++     S L  + + F   R             D     +
Sbjct: 801 KFELLDRILLKLKVTGHRLLMFCQMTS-LMSIMEDFLIYRQYRYLRLDGNTKSDDREKLL 859

Query: 102 QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N    +  +      S G GLNLQ   + +V F   W+  + +Q       +R  + 
Sbjct: 860 DLYNAPQSEYFIFLLSTRSGGIGLNLQ-SADTVVIFDSDWNPHQDKQA-----ESRAHRI 913

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G  R V V  LI  N+I+E +    + K  I   ++ A +
Sbjct: 914 GQSREVRVLRLITVNSIEEKIQATAKCKLDIDKKVIQAGR 953


>gi|320592092|gb|EFX04531.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 992

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 69  APIIVAYHFNSDLA----RLQKAFPQGRTLD------KDPCTIQEWNEG-KIPLLFAHPA 117
              I+   F + L     RL++A      LD      +   +I+ + E   +        
Sbjct: 839 HKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEYFKENVDVECFLVSLK 898

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL     + +    WW+     Q  +R       + G  R   V  L  +++++
Sbjct: 899 AGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCVVTRLCIEDSVE 952

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
             ++     K+ + +  +N+
Sbjct: 953 SRMVMLQEKKTKMINSTINS 972


>gi|308799669|ref|XP_003074615.1| Chromodomain-helicase-DNA-binding protein 6 (ISS) [Ostreococcus
           tauri]
 gi|116000786|emb|CAL50466.1| Chromodomain-helicase-DNA-binding protein 6 (ISS) [Ostreococcus
           tauri]
          Length = 1390

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 20/172 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQG 91
              +       K++ L+ ++   +      +V       L  L+                
Sbjct: 611 ASTNILVSSSGKLQLLDKLLPHLREGGHRALVFSQMTRVLDVLEDYCRARGHSYVRLDGS 670

Query: 92  RTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T       I  +   +    L      + G G+NL    + ++ F   W+ +   Q + 
Sbjct: 671 VTGSARQEAIDHYCAEDSDTFLFLLSTRAGGQGINLVQ-ADTVIMFDSDWNPQNDAQALA 729

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G  R V VY L+ + + ++ +  R   K  ++  +     KE
Sbjct: 730 R-----AHRIGQTRQVQVYRLVMRGSYEKEMFTRASMKLGLEQAIFGGADKE 776


>gi|296227865|ref|XP_002759553.1| PREDICTED: helicase-like transcription factor [Callithrix jacchus]
          Length = 1009

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 51  VHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK 96
               KI AL      + +K      +V   F + L+ ++                    K
Sbjct: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              +IQ +     G   ++     + G GLNL    + +      W+     Q  +R   
Sbjct: 890 RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-- 946

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               + G K+ V +   I +++++E +L+    K  + 
Sbjct: 947 ---HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|291241069|ref|XP_002740438.1| PREDICTED: transcriptional regulator ATRX-like [Saccoglossus
            kowalevskii]
          Length = 1981

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 33/207 (15%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            E+       NIE        +  LQL+      ++      V  + + +L  IIE     
Sbjct: 1585 EIVTPEDAYNIELGGKLVLLMDVLQLS------EDIGDKVLVFSQSLLSL-DIIED---- 1633

Query: 70   PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQE-WNEGKI---PLLFA 114
              +      ++ A            +      G T  ++    Q+ +N+ +     L   
Sbjct: 1634 -FLEYIETKAEEANTGDGEGAWVKGIDYFRMDGSTSAQNRKAFQDLFNDPENLRARLFLI 1692

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  +A F+Y  +AQ 
Sbjct: 1693 STKAGSLGINL-VSANRVIIFDASWNPTHDVQSIFRV-----YRFGQTKACFIYRFLAQG 1746

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            T++E + +R  TK ++   +++  + E
Sbjct: 1747 TMEEKIYERQVTKQSLSRRVVDQFQIE 1773


>gi|256070527|ref|XP_002571594.1| hypothetical protein [Schistosoma mansoni]
 gi|238656738|emb|CAZ27824.1| hypothetical conserved protein [Schistosoma mansoni]
          Length = 1266

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N+ K P  L      +   G+NL  G N +V F   W+     Q +     
Sbjct: 1046 EREKLINNFNDPKNPAKLFLMSTRAGCLGVNL-IGANRVVVFDASWNPCHDCQAV----- 1099

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G  +  ++Y L++ NT+++ +  R  TK  + D +++ L
Sbjct: 1100 CRVYRYGQVKPCYIYRLVSDNTMEKKIYDRQVTKQGMSDRVVDEL 1144


>gi|46137411|ref|XP_390397.1| hypothetical protein FG10221.1 [Gibberella zeae PH-1]
          Length = 1023

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP-LLFA 114
           +N   ++V  H    L  L   F              + +     +  +N      +   
Sbjct: 563 SNGDKVLVFSHSVRLLRILHHLFTNTSYTVSYLDGSLSYEVRQEVVDTFNSDPTQFVFLI 622

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLN+    N +V     W+     Q        R  + G  R V V+ LI+  
Sbjct: 623 STKAGGVGLNIT-SANKVVIIDPHWNPSYDLQA-----QDRAYRIGQTRDVEVFRLISLG 676

Query: 175 TIDELVLQRLRTKSTIQD 192
           T++E+V  R   K    +
Sbjct: 677 TVEEIVYARQIYKQQQAN 694


>gi|328872521|gb|EGG20888.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 2077

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 86   KAFPQGRTLDKDPC-TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G T  +D    I ++N+    I L      +   G NL  GG  ++ F L W+  
Sbjct: 1852 YFRLDGTTRPQDRQIMIHKYNDLTNSIKLFLISTKAGSLGTNLT-GGTRVILFDLMWNPV 1910

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +Q + R       + G  + V+VY +I   T++E +  RL +K  +    ++
Sbjct: 1911 HERQAVFRCF-----RIGQTKPVYVYTIITAATLEENMYPRLISKQQLAKRTID 1959


>gi|313211798|emb|CBY15966.1| unnamed protein product [Oikopleura dioica]
          Length = 602

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------------KIKALEVI 62
           ++   +E  +      K  QL +   +  +E+  K   ++            K++AL  +
Sbjct: 127 VRDALLEGAHCFGILAKLRQLVSHPYFVGDEETGKITEEQISRSIKKPLISGKMQALLSL 186

Query: 63  IE--KANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCT-----IQEWNE-GKI 109
           +   +     ++V       L  +     +   P      + P +     I E+N+    
Sbjct: 187 LGGWRKQKRKVLVFCQCLPSLKMIVGMCNRNYVPVLSIYGQTPVSTRQMLINEFNDSPDA 246

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +       G GLN+ +G    V F   W+  + +Q   RI      +      V +Y 
Sbjct: 247 FAMVMTSRVGGVGLNI-HGATRTVIFEPDWNPGQDEQAAARI-----HRPQQTDNVAIYR 300

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           LI  ++I+E + QR   K ++   +L+
Sbjct: 301 LITNDSIEEWIYQRQIYKHSVAQHVLS 327


>gi|195341840|ref|XP_002037513.1| GM18271 [Drosophila sechellia]
 gi|194132363|gb|EDW53931.1| GM18271 [Drosophila sechellia]
          Length = 1420

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + E+N    + L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 836 ERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 891

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  +  FVY ++    +++ +  R   K  + D +++
Sbjct: 892 --YRYGQTKPCFVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 931


>gi|330924634|ref|XP_003300716.1| hypothetical protein PTT_12049 [Pyrenophora teres f. teres 0-1]
 gi|311325001|gb|EFQ91184.1| hypothetical protein PTT_12049 [Pyrenophora teres f. teres 0-1]
          Length = 1117

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 31/173 (17%)

Query: 51   VHDEKIKALEVIIEK--------ANAAPI--IVAYHFNSDLARLQKAFPQG--------- 91
                K KAL   +++         N  PI  IV   + + L  ++ A             
Sbjct: 935  GPHTKTKALLDDLDEFRQWSDQNPNERPIKSIVFSSWTTHLDLIEIALKNAGHTLVRLDG 994

Query: 92   ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   DK    ++E  +  I ++     + G GLNL    N +      ++     Q 
Sbjct: 995  RMTRENRDKSMQALRE--DSSIRVMLVSIGAGGLGLNLTT-ANKVFMMEPQFNPAAEAQA 1051

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++R+      + G  R V +   I   + +E +L+    K  + D+ ++  +K
Sbjct: 1052 VDRV-----HRLGQDREVTIKRFIMNGSFEEKMLELQNKKRDLADMTMSRERK 1099


>gi|326671144|ref|XP_691636.4| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Danio rerio]
          Length = 1020

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTL 94
               +   K+  L  ++         +++   F   L  L+                  +
Sbjct: 841 TDVLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPM 900

Query: 95  DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I ++N    I +      + G G+NL    N+++   +  +    +Q   R   
Sbjct: 901 SDRIGLIDQFNTDQDIFVFLLSTRAGGLGINLT-SANVVILHDIDCNPYNDKQAEGRC-- 957

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  + V V  LI++++I++ +L+    K  ++  +
Sbjct: 958 ---HRVGQTKTVKVIKLISKDSIEDTMLRIGERKLKLEQEM 995


>gi|16943790|emb|CAD10805.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Homo sapiens]
          Length = 1009

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|107099852|ref|ZP_01363770.1| hypothetical protein PaerPA_01000872 [Pseudomonas aeruginosa PACS2]
 gi|37955686|gb|AAP22525.1| putative helicase [Pseudomonas aeruginosa]
          Length = 657

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 493 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDR 552

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 553 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 606

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 607 RMVVVKIPLVEATIDEQLWQLLNAKRQVAQDLIE 640


>gi|325675298|ref|ZP_08154983.1| helicase [Rhodococcus equi ATCC 33707]
 gi|325554004|gb|EGD23681.1| helicase [Rhodococcus equi ATCC 33707]
          Length = 585

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y     E   D  G  IE      +      Q+ N       E         K+     
Sbjct: 359 IYDVLLAEAVDDGFGAGIERHGRVLAVLTALKQVCNHPGLITGEMDSLAGRSGKLDLCTD 418

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNEG 107
           I+       +P ++   +      L +   +             R  ++     +  +E 
Sbjct: 419 IVATNMETGSPTLIFTQYRRTGEMLVRHLAEQFDVAAPFLHGGLRQSERAEIVSRFQSED 478

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+L     + G GL L    + +V F  WW+     Q  +R       + G  R V V
Sbjct: 479 GPPVLVLSLRAAGTGLTLTRAAD-VVHFDRWWNPAVEAQASDR-----AHRIGQTRTVTV 532

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDL 193
             L +  T++E +      K+ + DL
Sbjct: 533 TTLTSTTTVEEHIAGMHGRKAALTDL 558


>gi|225680964|gb|EEH19248.1| SNF2 family helicase/ATPase [Paracoccidioides brasiliensis Pb03]
          Length = 663

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL 94
           K+ + +   K+  L  ++ +   N    ++   F   +  L+              G T 
Sbjct: 455 KNDEWMQSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTVQMPFFRLDGSTS 514

Query: 95  DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D   I   ++E  +IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 515 VEDRQAILDAFHEQVEIPVFLLSTKAGGAGVNL-ACANKVIIFDSSFNPQEDVQA----- 568

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 569 ENRAHRVGQTREVEVVRLVTRGTIEEQMYALGQTKLALDQRV 610


>gi|14548140|gb|AAK66797.1|U40238_20 SWI/SNF family helicase [uncultured crenarchaeote 4B7]
          Length = 570

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +   G+T       I  + +G+  L+ A   +   G+NL      ++F  L W    H+Q
Sbjct: 440 SIIGGQTDVVRQREIDRFQKGQTKLMIAGLRAGNVGINLTT-AKYVIFAELDWSPAIHRQ 498

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +R+      + G K  VF YYL+ + T+DE V + L  KS   D +L+
Sbjct: 499 AEDRL-----HRIGQKNTVFAYYLVGKGTLDEHVAEILVDKSYEIDTILD 543


>gi|310641398|ref|YP_003946156.1| helicase protein [Paenibacillus polymyxa SC2]
 gi|309246348|gb|ADO55915.1| Helicase protein [Paenibacillus polymyxa SC2]
          Length = 630

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I K N   +I+   + +    L   F        P    +++     + 
Sbjct: 375 ANSKAEKALELIRKMNEK-VIIFTEYRATQEYLLNYFRDRGLSAVPYRGGMNRGRKDWMM 433

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G+I ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G K
Sbjct: 434 DLFRGRIQVMIA-TEAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQK 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 HDVNIFNLSTTGTIEEHILHLLHEKINMFEMVIGGL 522


>gi|307109767|gb|EFN58004.1| hypothetical protein CHLNCDRAFT_34395 [Chlorella variabilis]
          Length = 1019

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 84/223 (37%), Gaps = 38/223 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCL----QL---ANGAVYYD--EEKHWKEVHDE-- 54
           + QR+ Y  L  ++++A    +   + L    QL    N    +   E        D   
Sbjct: 356 EMQRKYYAALLQKDMDAVTGGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYLTGDHLV 415

Query: 55  ----KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD-P 98
               K+  L+ ++ K     + +++       +  L+              G T  +D  
Sbjct: 416 ENAGKMVLLDKLLPKLQSRGSRVLIFSQMTRMIDILEDYCLYRQYGYCRIDGNTSGEDRE 475

Query: 99  CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N   G   +      + G G+NL Y  +I++ +   W+ +   Q ++R      
Sbjct: 476 SQIDDYNKASGGRFVFLLSTRAGGLGINL-YTADIVILYDSDWNPQMDLQAMDR-----A 529

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL---VLQRLRTKSTIQDLLLN 196
            + G K+ V V+     ++I+E    V+++   K  +  L++ 
Sbjct: 530 HRIGQKKEVQVFRFCTDHSIEEKATCVIEKAYKKLRLDALVIQ 572


>gi|170048582|ref|XP_001853354.1| transcriptional regulator ATRX [Culex quinquefasciatus]
 gi|167870647|gb|EDS34030.1| transcriptional regulator ATRX [Culex quinquefasciatus]
          Length = 1334

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   L      + G G+NL    N ++ F + W+     Q I R+      + G  +  +
Sbjct: 978  GDKLLFLISTRAGGLGINL-VAANRVIIFDVSWNPSHDIQSIFRV-----YRFGQVKPCY 1031

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Y  +A  T++E + +R  TK  I   +++
Sbjct: 1032 IYRFLAMGTMEEKIYERQVTKQAISKRVID 1061


>gi|170102282|ref|XP_001882357.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
 gi|164642729|gb|EDR06984.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
          Length = 1341

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 48   WKEVHDEKIKALEVI----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------- 94
             K +   K+K +  +    IEK      ++   +   L+ +     +   +         
Sbjct: 1154 PKFLPSTKMKFMMEVLIKGIEKRPEEKTLIISQWTGCLSLVSAYLTEKGIIHVKYQGDMN 1213

Query: 95   -DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +K    ++ + ++ K  ++       G GLNL    N ++   L W      Q  +R+ 
Sbjct: 1214 RNKRDQAVRVFMSKDKARVMLMSLKCGGVGLNLTRANN-VISLDLGWSRAIEDQAFDRV- 1271

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 + G  R V V  L+  +T+++ +L     K ++ D
Sbjct: 1272 ----HRLGQTRPVEVQRLVIADTVEDRLLNIQERKQSLAD 1307


>gi|195127720|ref|XP_002008316.1| GI13420 [Drosophila mojavensis]
 gi|193919925|gb|EDW18792.1| GI13420 [Drosophila mojavensis]
          Length = 1723

 Score = 81.5 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N       +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1230 EDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1283

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1284 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1328


>gi|575251|emb|CAA86571.1| helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|47229701|emb|CAG06897.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1219

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ-----------------GR 92
           +  K+  L  +IE++      ++V     S L+ ++    +                  R
Sbjct: 627 NSAKMVLLFHLIEESVKKRDKLLVFSQSLSTLSVIEDFLSKRPMPSGITSSEPRSQNWVR 686

Query: 93  TLD-----------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            L+           +    I ++N+ +     +      +   G+NL  G N +V F   
Sbjct: 687 NLNYYRLDGSTSASERERLINQFNDPENNTAWIFLLSTRAGCLGVNL-IGANRVVVFDAS 745

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G ++  F+Y L+   T+++ +  R  +K  + D +++ L
Sbjct: 746 WNPCHDAQAV-----CRVYRYGQRKPCFIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDL 800


>gi|269860637|ref|XP_002650038.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066525|gb|EED44003.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 1176

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 16/142 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHP 116
               +++       L  L +     +            D     I  ++     +     
Sbjct: 603 GKHKVLIFSQMTKCLDLLSEYLSYRKFKYERIDGSIRGDLRQAAIDRFSTEDSFVFLLCT 662

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    +  + F   W+ +   Q   R       + G K  V +Y L+ +N+ 
Sbjct: 663 RAGGVGINLT-AADTCIIFDSDWNPQNDLQAQARC-----HRIGQKNQVKIYRLVTKNSY 716

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +  +  +   K  +   +L  +
Sbjct: 717 EREMFDKAGMKLGLDKAVLQKM 738


>gi|198423144|ref|XP_002119349.1| PREDICTED: similar to transcriptional regulator ATRX [Ciona
           intestinalis]
          Length = 1357

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--- 63
           + E Y  + G+++ +  N+  K     ++   A   D++          +  +E ++   
Sbjct: 728 ENEWYSSIVGKDVADDQNAGGKLAVLFEILRLAHECDDKILVFSQSLLSLDLIEEMLALS 787

Query: 64  -----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-IQEWNE---GKIPLLFA 114
                 +     I     +      L      G +L K     I E+N+    +  L   
Sbjct: 788 TVKVLSQLEDGKISTEIDYRKWYKNLDYFRMDGSSLGKSRQRWINEFNDETDRRARLFLI 847

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +   G+NL    N +V F   W+     Q I R+      + G  +  ++Y LIAQ 
Sbjct: 848 STKAGSLGVNL-VAANRVVIFDASWNPSHDIQSIFRV-----YRFGQAKCCYIYRLIAQG 901

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E +  R  TK ++   +++
Sbjct: 902 TMEEKIYDRQVTKQSLSFRVVD 923


>gi|325091158|gb|EGC44468.1| DNA repair protein RAD5 [Ajellomyces capsulatus H88]
          Length = 1196

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEV-IIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK--------- 96
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 994  TSAKIHALISHLTDLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAV 1053

Query: 97   ----------DPCTIQEWNEGKIP---------------LLFAHPASCGHGLNLQYGGNI 131
                      D    ++ N  +                 +L     + G GLNL    N 
Sbjct: 1054 LAKFTSAHFPDEEDDEDGNNKRQSKFPSSRSHVKAPPPNVLLISLRAGGVGLNLT-AANQ 1112

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 1113 VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIA 1167

Query: 192  DLL 194
              L
Sbjct: 1168 GSL 1170


>gi|240275323|gb|EER38837.1| DNA repair protein rad5 [Ajellomyces capsulatus H143]
          Length = 1034

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEV-IIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK--------- 96
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 832  TSAKIHALISHLTDLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAV 891

Query: 97   ----------DPCTIQEWNEGKIP---------------LLFAHPASCGHGLNLQYGGNI 131
                      D    ++ N  +                 +L     + G GLNL    N 
Sbjct: 892  LAKFTSAHFPDEEDDEDGNNKRQSKFPSSRSHVKAPPPNVLLISLRAGGVGLNLT-AANQ 950

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 951  VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIA 1005

Query: 192  DLL 194
              L
Sbjct: 1006 GSL 1008


>gi|225561718|gb|EEH09998.1| DNA repair protein rad5 [Ajellomyces capsulatus G186AR]
          Length = 1196

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEV-IIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDK--------- 96
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 994  TSAKIHALISHLTDLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAV 1053

Query: 97   ----------DPCTIQEWNEGKIP---------------LLFAHPASCGHGLNLQYGGNI 131
                      D    ++ N  +                 +L     + G GLNL    N 
Sbjct: 1054 LAKFTSAHFPDEEDDEDGNNKRQSKFPSSRSHVKAPPPNVLLISLRAGGVGLNLT-AANQ 1112

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 1113 VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIA 1167

Query: 192  DLL 194
              L
Sbjct: 1168 GSL 1170


>gi|85097277|ref|XP_960412.1| hypothetical protein NCU11284 [Neurospora crassa OR74A]
 gi|28921903|gb|EAA31176.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|39979195|emb|CAE85566.1| conserved hypothetical protein [Neurospora crassa]
          Length = 1197

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNE- 106
              KI  L  I+  +A     IV   F S L      L+   P  + +  D     +  E 
Sbjct: 962  SSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMSNDAREA 1021

Query: 107  --------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +  +L         GLNL      ++    +W+    +Q I+R+      +
Sbjct: 1022 SLHSLRKDPRTRILLCSLKCGSLGLNLT-AATRVIIVEPFWNPFVEEQAIDRV-----HR 1075

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  V VY L  + T++  +L+    K  +    +  
Sbjct: 1076 LTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQTAVEG 1114


>gi|116052602|ref|YP_792917.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481700|gb|AAP84214.1| DNA helicase [Pseudomonas aeruginosa PA14]
 gi|115587823|gb|ABJ13838.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 657

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++    ++ + +A   +I+   F   +A L++   Q             L K    I  
Sbjct: 493 KVRVAMDLLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDR 552

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     A+ G G NL    N + F  L W   + +Q  +R       + G  
Sbjct: 553 FQQDPDCRVFICTTAAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQL 606

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + TIDE + Q L  K  +   L+ 
Sbjct: 607 RMVVVKIPLVEATIDEQLWQLLNAKRQVAQDLIE 640


>gi|145512521|ref|XP_001442177.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409449|emb|CAK74780.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1014

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
           +++   F   L  L+                  + +    I E+ +      +      +
Sbjct: 466 VLIFSQFTMMLNILEDYCNYRKYDYCRIDGETEIQQRDDQIAEFTKPDSKKFIFLLSTRA 525

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ +   ++ +   Q ++R       + G K  V VY +  ++TI+E
Sbjct: 526 GGLGINL-ATADTVIIYDSDFNPQMDMQAMDR-----AHRIGQKNRVMVYRMACEHTIEE 579

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++R + K     L++ 
Sbjct: 580 KIIERQQIKLRWDSLMIQ 597


>gi|168035589|ref|XP_001770292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162678509|gb|EDQ64967.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1031

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 69  APIIVAYHFNSDLARL---------QKAFPQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
           + +++       L  L         Q     G T  D    +I ++N    +        
Sbjct: 485 SRVLIFSQMTRLLDILEDYCQFRSYQYCRIDGNTSGDDRESSIDQFNAPNSEKFCFLLST 544

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    +I++ +   W+ +   Q        R  + G K+ V V+    + TI
Sbjct: 545 RAGGLGINL-ATADIVILYDSDWNPQVDLQA-----QDRAHRIGQKKEVQVFRFCTEFTI 598

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E V++R   K  +  L++ 
Sbjct: 599 EEKVIERAYKKLALDALVIQ 618


>gi|326678432|ref|XP_002666261.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Danio rerio]
          Length = 607

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 20/156 (12%)

Query: 58  ALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQE 103
           A++  I+   ++     +V  H  S L    +A  + +             ++     + 
Sbjct: 22  AVKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQLVHRF 81

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+    +      + G GL      + +VF  L+W+    +Q  +R       + G   
Sbjct: 82  QNDPDTRVAVLSIQAAGQGLTFT-AASHVVFAELYWNPGHIKQAEDR-----AHRIGQTA 135

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V ++YLIA+ T D ++   L  K T+    LN  K
Sbjct: 136 TVHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKK 171


>gi|330800474|ref|XP_003288261.1| hypothetical protein DICPUDRAFT_97966 [Dictyostelium purpureum]
 gi|325081717|gb|EGC35223.1| hypothetical protein DICPUDRAFT_97966 [Dictyostelium purpureum]
          Length = 1718

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 25/160 (15%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDKDPC- 99
                L+   E  N   ++      S L +L+    +              G+T  K    
Sbjct: 1450 FFSMLKNFTE--NGEKVVAFSFSISTLNQLEYFLQKNLNWKPNIDYFRLDGQTPSKVRQR 1507

Query: 100  TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +NE    + L      +   G NL  GG  ++   L W+    +Q + R       
Sbjct: 1508 MINRFNEEDNHLKLFIISTKAGSLGTNLT-GGTRVIILDLSWNPVHDRQAVYRC-----Y 1561

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+ V+VY L+   T +E +  R+  K  +    ++A
Sbjct: 1562 RIGQKKTVYVYTLVMAGTGEERIYNRMIHKQALAKRAVDA 1601


>gi|45185972|ref|NP_983688.1| ACR286Cp [Ashbya gossypii ATCC 10895]
 gi|44981762|gb|AAS51512.1| ACR286Cp [Ashbya gossypii ATCC 10895]
          Length = 1019

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
              K+  L+ ++  A       +V   F   L  L+                  ++    
Sbjct: 845 ASGKVHRLQPLLRAAIARREKTLVFSLFTQVLDILELVLSSLGIAFLRLDGSTPVNDRQA 904

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  ++    +P+      + G G+NL    ++++F       +      +R    R  +
Sbjct: 905 LIDRFHTDTDVPVFLLSTKAGGFGINLVCANHVIIFD------QSFNPHDDRQAADRAHR 958

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R V V  L+++ T++E +LQ  R K  +   + +
Sbjct: 959 VGQTREVAVTTLVSRATVEEKILQLARHKLALDSSVSD 996


>gi|68011272|ref|XP_671073.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486917|emb|CAI01503.1| hypothetical protein PB300236.00.0 [Plasmodium berghei]
          Length = 220

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
           K    V+  K++ L   I++   N   ++V   +   L  ++K           +    T
Sbjct: 11  KKDNFVYSTKLRILFDHIKEDIKNELHVVVFSQWIGFLKIIEKLLTLHEIPNKIYDGSLT 70

Query: 94  LDKDPCTIQEWN--EGKI---------------------PLLFAHPASCGHGLNLQYGGN 130
            ++   T+  +N  +GKI                      +L     + G GLNL    +
Sbjct: 71  YEQRKSTLYWFNIQKGKIYQPGIGFCQSTCDIPIENESGKVLLCSLKAGGVGLNLTVS-S 129

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +    LWW+     Q  ERI      + G  + V +Y  + + T++E +LQ  ++K   
Sbjct: 130 KVYLMDLWWNPAIEDQAFERI-----HRIGQLKDVNIYKFVLEKTVEERILQIHQSKQYT 184

Query: 191 QDLLLNAL 198
            +  L  +
Sbjct: 185 ANQCLAQV 192


>gi|289613402|emb|CBI59655.1| unnamed protein product [Sordaria macrospora]
          Length = 1346

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 34/211 (16%)

Query: 16  QGENIEAFNSASKTVKCLQL----ANGAVYYDE----------EKHWKEVHDEKIKALEV 61
               +++ +  S +   +QL     +  VY              K        K+  LEV
Sbjct: 779 SNGKLKSQDRGSLSNILMQLRKCLCHPFVYSQSIEDRNLSPEVSKRNLVEASSKLLLLEV 838

Query: 62  IIEKAN--AAPIIVAYHFNSDLARLQK-----AFPQGRTLDKDPCT-----IQEWNEGKI 109
           ++ K       +++   F   L  L+        P  R             I  +N    
Sbjct: 839 MLPKLRERGHRVLMFSQFLDQLTILEDFLASMNLPYERLDGSHSGMEKQKRIDAFNAPDS 898

Query: 110 PLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            L        + G G+NL    + ++     W+  +  Q + R       + G ++ V  
Sbjct: 899 KLFCMLLSTRAGGVGINL-ATADTVIILDPDWNPHQDIQALSR-----AHRIGQQKKVLC 952

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + L+  ++ +E +LQ  R K  +  LL+  +
Sbjct: 953 FQLMTVDSAEEKILQIGRKKMALDHLLIETM 983


>gi|221502667|gb|EEE28387.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            VEG]
          Length = 2103

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC---T 100
            K   L+V++         +++       L  L+              G T  ++     +
Sbjct: 1575 KFAMLDVLLPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLS 1634

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +      +  +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G
Sbjct: 1635 LYNQEGSEYFIFILSTKAGGLGVNLQ-SADTVIIFDSDWNPQNDEQA-----QSRAHRIG 1688

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V     I+  +I+E +LQR   K     L++ +
Sbjct: 1689 QKKEVLTLRFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|221485125|gb|EEE23415.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            GT1]
          Length = 2103

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC---T 100
            K   L+V++         +++       L  L+              G T  ++     +
Sbjct: 1575 KFAMLDVLLPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLS 1634

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +      +  +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G
Sbjct: 1635 LYNQEGSEYFIFILSTKAGGLGVNLQ-SADTVIIFDSDWNPQNDEQA-----QSRAHRIG 1688

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V     I+  +I+E +LQR   K     L++ +
Sbjct: 1689 QKKEVLTLRFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|237842499|ref|XP_002370547.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            ME49]
 gi|211968211|gb|EEB03407.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            ME49]
          Length = 2668

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPC---T 100
            K   L+V++         +++       L  L+              G T  ++     +
Sbjct: 1575 KFAMLDVLLPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLS 1634

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +      +  +      + G G+NLQ   + ++ F   W+ +  +Q       +R  + G
Sbjct: 1635 LYNQEGSEYFIFILSTKAGGLGVNLQ-SADTVIIFDSDWNPQNDEQA-----QSRAHRIG 1688

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V     I+  +I+E +LQR   K     L++ +
Sbjct: 1689 QKKEVLTLRFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|195122656|ref|XP_002005827.1| GI20681 [Drosophila mojavensis]
 gi|193910895|gb|EDW09762.1| GI20681 [Drosophila mojavensis]
          Length = 1457

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + E+N    I L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 815 ERERLVNEFNANCNIKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 870

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  +  +VY ++    +++ +  R   K  + D +++
Sbjct: 871 --YRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 910


>gi|149184879|ref|ZP_01863196.1| SNF2 family helicase [Erythrobacter sp. SD-21]
 gi|148830990|gb|EDL49424.1| SNF2 family helicase [Erythrobacter sp. SD-21]
          Length = 556

 Score = 81.1 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 23/156 (14%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD------------- 95
           +   K++    I+E+A  +   +++   FN     + +   QGR  D             
Sbjct: 381 LFTPKVERAIAILEEAFRSGRKVLIFAIFNR-CGEILREAAQGRLPDAYWGAINGGTPQE 439

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    +  ++    P  L  +P + G GLN+     +++ F+  W+     Q   R    
Sbjct: 440 ERQAIVDAFSCHDGPGCLVLNPKAAGAGLNIT-AATVVIHFTQAWNPALESQASAR---- 494

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G    V++Y L  ++T++ +++ R + +  +
Sbjct: 495 -AHRRGQTEPVYIYRLFYEDTVERVMIDRSQWRREL 529


>gi|25465825|pir||T51892 hypothetical protein B23I11.40 [imported] - Neurospora crassa
          Length = 1173

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNE- 106
              KI  L  I+  +A     IV   F S L      L+   P  + +  D     +  E 
Sbjct: 938  SSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMSNDAREA 997

Query: 107  --------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +  +L         GLNL      ++    +W+    +Q I+R+      +
Sbjct: 998  SLHSLRKDPRTRILLCSLKCGSLGLNLT-AATRVIIVEPFWNPFVEEQAIDRV-----HR 1051

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  V VY L  + T++  +L+    K  +    +  
Sbjct: 1052 LTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQTAVEG 1090


>gi|328847835|gb|EGF97150.1| hypothetical protein MELLADRAFT_87579 [Melampsora larici-populina
           98AG31]
          Length = 220

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +  PQ RTL       +  N   I        + G GLN+    + +      W+ +  Q
Sbjct: 85  EMTPQERTL----QLNRFQNNNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQ 139

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Q I+R+      + G    V VY+++A  ++++ +    + K+++   ++
Sbjct: 140 QAIDRL-----HRIGQTHPVKVYHVVAGGSVEQHLFNVQKKKASLARKVI 184


>gi|298714899|emb|CBJ27655.1| similar to chromodomain helicase DNA binding protein 4 isoform 5
            [Ectocarpus siliculosus]
          Length = 2326

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I L F    + G G+NL    + ++ +   W+     Q + R       + G    V
Sbjct: 1181 DKDIFLFFLSTKAGGQGINL-ATADTVIIYDSDWNPHNDLQALAR-----AHRIGQANKV 1234

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +Y  +++ T++E +L+  + K  ++ +++    K    
Sbjct: 1235 MIYRFVSRATVEERILEVAKKKLLLEHVVVQDGNKSMTQ 1273


>gi|328867660|gb|EGG16042.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1999

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEG--KIPLL 112
           +A    +++       L  L               G     D    I  +++      + 
Sbjct: 800 RAGGHKVLIFSQMVMVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKKGSDSFVF 859

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY L+ 
Sbjct: 860 LLCTKAGGIGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQDKMVKVYRLVT 913

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +NT ++++  R   K ++  ++L  +
Sbjct: 914 RNTYEKIMFDRASKKLSLDKVVLTKM 939


>gi|193084404|gb|ACF10057.1| SNF2-related protein [uncultured marine crenarchaeote
           SAT1000-21-C11]
          Length = 569

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 20/201 (9%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y     +++  L+ E   A    SK     +    A+  + +          I  ++ I+
Sbjct: 355 YKNELNKIWSKLEEEQKSAETEFSKVASYQR----AIQSERQAAGVAKLHHVIDFVKNIM 410

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAH 115
           E      ++V  H  S    L ++  +        G+T       I  +  G   L+   
Sbjct: 411 EIEE--SVVVFCHHKSIHKLLHESLQEFNPAAIIGGQTDKVRQENIDNFQNGGTKLIVVG 468

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W    H+Q  +R+      + G K  VF YYLI + T
Sbjct: 469 LRAGNLGINLTR-AKYVIFAELDWSPAIHRQAEDRL-----HRIGQKNTVFAYYLIGKRT 522

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +DE V   L  KS   D +++
Sbjct: 523 LDEHVANILVDKSYEIDAIMD 543


>gi|14140291|gb|AAK54297.1|AC034258_15 putative helicase [Oryza sativa Japonica Group]
          Length = 1492

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 33/181 (18%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KA 87
            DE  + +  +  K+  L  I+   +      +V     S L  ++             K 
Sbjct: 1121 DENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSKLQVNGKEGKY 1180

Query: 88   FPQGRTLDK---------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFF 135
            + QG+   +             ++ +N+ +   +        +   G+NL +  N ++  
Sbjct: 1181 WKQGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGSLGINL-HSANRVILL 1239

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q I R+      + G  + V+ Y L+A  T++E + +R  TK  +   ++
Sbjct: 1240 DGSWNPTHDLQAIYRVW-----RYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVV 1294

Query: 196  N 196
            +
Sbjct: 1295 D 1295


>gi|330845465|ref|XP_003294605.1| hypothetical protein DICPUDRAFT_4822 [Dictyostelium purpureum]
 gi|325074901|gb|EGC28868.1| hypothetical protein DICPUDRAFT_4822 [Dictyostelium purpureum]
          Length = 1004

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 68  AAPIIVAYHFNSDLARL---------QKAFPQGRTLD-KDPCTIQEWNEG--KIPLLFAH 115
            + +++       L  L         + A   G T       +I  +N+   ++      
Sbjct: 479 GSRVLIFSQMARMLDILEDYMLYRNYRYARIDGSTDSVSRENSIDNFNKPGSELFAFLLT 538

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+ L    ++++ F   W+ +   Q        R  + G  + V VY  + + +
Sbjct: 539 TRAGGLGITL-NTADVVILFDSDWNPQMDLQA-----QDRAHRIGQTKPVTVYRFVTEAS 592

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           ++E ++++   K  +  L++ 
Sbjct: 593 MEEKMVEKAEMKLQLDALVIQ 613


>gi|168050295|ref|XP_001777595.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162671080|gb|EDQ57638.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 775

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKD 97
              K+  L  ++         +++       L  L++                   + + 
Sbjct: 540 ASAKLTLLHSMLRHLKRGGHRVLIFSQMTKLLDILEEYMVFEFGAHSYERVDGSVPVAER 599

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +I  +N+ +   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 600 QKSISRFNQDQSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 653

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G  + + VY L+ + +++E +LQ  R K
Sbjct: 654 HRIGQSKTLLVYRLVVRASVEERILQLARKK 684


>gi|303283790|ref|XP_003061186.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226457537|gb|EEH54836.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 962

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 74/222 (33%), Gaps = 39/222 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
             Q++ Y     ++IE  N      + L +                   G  Y+  E   
Sbjct: 340 DMQKDYYKKALQKDIEVVNRGGDRSRLLNMVMQLRKCCNHPYLFQGAEPGPPYFTGEHII 399

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
           +  +  K+  L+ ++ +     + +++       L  L+      +            + 
Sbjct: 400 E--NSGKMVLLDKLLTRLKEKGSRVLIFSQMTRLLDILEDYMIYRQHKYCRIDGNTSGED 457

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N    +         + G G+NL    + ++ +   W+ +   Q ++R    
Sbjct: 458 RENAIDGYNAPGSEKFAFLLSTRAGGLGINL-VTADTVIIYDSDWNPQMDLQAMDR---- 512

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R V V+      +++E V+++   K  +  L++ 
Sbjct: 513 -AHRIGQTREVSVFRFCTDMSVEEKVIEKAYKKLALDALVIQ 553


>gi|94268376|ref|ZP_01291158.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
 gi|93451632|gb|EAT02425.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
          Length = 1022

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSD----LARLQK- 86
           +A  A    ++   + V   KI  L  I+++    +    +V   +         RL++ 
Sbjct: 590 MACDAAGLVDK---ESVGSPKIDELAQILDEVCLQSGLKAVVFSQWELMTRMVEQRLRRL 646

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    G    K    ++ +      L+F    + G GLNLQ   ++LV   + W+ 
Sbjct: 647 GIGYVRLHGGVPTAKRGELLERFRSDDSVLVFLSTDAGGVGLNLQ-SASVLVNLDVPWNP 705

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +Q   RI      + G    V +  ++A N+ +E VL  ++ K  + D ++
Sbjct: 706 AVLEQRNGRI-----HRLGQPNKVQIITMVAANSYEEQVLSLVQNKQALFDQVI 754


>gi|83769647|dbj|BAE59782.1| unnamed protein product [Aspergillus oryzae]
          Length = 1100

 Score = 81.1 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALE----VIIEKANA----API--IVAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL       ++++       PI  +V   + S L  ++ A            
Sbjct: 916  EGPHTKTKALIAYLLETMDESKGLTDERPIKSVVFSAWTSHLDLIEIALKDNGITGFTRL 975

Query: 93   ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                TL      +QE+ +   I +L A   + G GLNL     + +     ++     Q 
Sbjct: 976  DGTMTLSARQKALQEFHDNNDITILLATIGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 1034

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1035 VDRV-----HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1087


>gi|307197292|gb|EFN78584.1| Chromodomain-helicase-DNA-binding protein 7 [Harpegnathos saltator]
          Length = 4395

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            Y +     R++    Q             +      +      + G G+NL    + ++ 
Sbjct: 2130 YPYERIDGRIRGNLRQAAIDRYSKPDSDRF------VFLLCTKAGGLGINLT-AADTVII 2182

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+ +   Q   R       + G ++ V VY L+ +NT +  +  +   K  +   +
Sbjct: 2183 YDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAI 2237

Query: 195  LNAL 198
            L ++
Sbjct: 2238 LQSM 2241


>gi|1658307|emb|CAA86572.1| helicase-like transcription factor [Homo sapiens]
          Length = 887

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 703 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGS 762

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 763 MAQKKRVESIQCFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 821

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 822 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 859


>gi|145522063|ref|XP_001446881.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414370|emb|CAK79484.1| unnamed protein product [Paramecium tetraurelia]
          Length = 987

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
           +++   F   L  L+                  + +    I E+ +      +      +
Sbjct: 454 VLIFSQFTMMLNILEDYCNYRKYDYCRIDGETEIQQRDDQIAEFTKPDSKKFIFLLSTRA 513

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ +   ++ +   Q ++R       + G K  V VY +  ++TI+E
Sbjct: 514 GGLGINL-ATADTVIIYDSDFNPQMDMQAMDR-----AHRIGQKNRVMVYRMACEHTIEE 567

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++R + K     L++ 
Sbjct: 568 KIIERQQIKLRWDSLMIQ 585


>gi|299531068|ref|ZP_07044481.1| helicase domain-containing protein [Comamonas testosteroni S44]
 gi|298721025|gb|EFI61969.1| helicase domain-containing protein [Comamonas testosteroni S44]
          Length = 616

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 17/152 (11%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGK 108
           E +        +I+   + S +  L++A                L +    +  +  +  
Sbjct: 444 ETVQAMGEDDKLIIFCEYMSTVEALKQALASLGVGCVSLVGSDSLKRRQAAVDAFQRDAS 503

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +      + G G+ L    NI+ F S+ W     +Q  +R       + G  R V V 
Sbjct: 504 IKVFIGTTMAAGVGITLT-AANIVAFASMPWTPALMRQAEDR-----AYRLGQIRDVLVL 557

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             I Q TIDE VLQ    K T +  ++ A KK
Sbjct: 558 VPIIQGTIDEGVLQLQENKHTTEIEVVEAAKK 589


>gi|308068514|ref|YP_003870119.1| Hypothetical helicase [Paenibacillus polymyxa E681]
 gi|305857793|gb|ADM69581.1| Hypothetical helicase [Paenibacillus polymyxa E681]
          Length = 604

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K +    +I + N   +I+   + +    L   F        P    +++     + 
Sbjct: 375 ANSKAEKALELIRQMNEK-VIIFTEYRATQEYLLNYFRDRGLSAVPYRGGMNRGRKDWMM 433

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G+I ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 434 DLFRGRIQVMIA-TEAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 HDVNIFNLSTTGTIEEHILHLLHEKINMFEMVIGGL 522


>gi|313238451|emb|CBY13525.1| unnamed protein product [Oikopleura dioica]
          Length = 590

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
           LE ++  A +A I++  +    L  ++K                +  +++    +   + 
Sbjct: 412 LEELL--AESAKILIFSNSKKILTIIEKLLSGKNIKYDRIDGTIQPKERNNKVHRFQTDS 469

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +          GL L      ++ F  +W+  +  Q ++R       + G K AV V
Sbjct: 470 TIKVCLLTTGVGAVGLTLT-AATRVIVFDPYWNPSKDDQAVDR-----AYRIGQKNAVVV 523

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
           + LI   TI+E +  +   K +I
Sbjct: 524 FRLITCETIEEKIYSKQLFKKSI 546


>gi|195389136|ref|XP_002053233.1| GJ23773 [Drosophila virilis]
 gi|194151319|gb|EDW66753.1| GJ23773 [Drosophila virilis]
          Length = 1952

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 34/193 (17%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFN 78
             T    QLA      D+ +H       K+ AL+ ++         E  +    ++     
Sbjct: 1698 LTNVAAQLALSNSTLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLK 1752

Query: 79   SDLAR-----LQKAFPQGRTLDKDPCT--------IQEWN-EGKIPLLFAHPASCGHGLN 124
            + L       L+K  P    L  D           +  +N +  I +L       G GLN
Sbjct: 1753 AMLDIVEHDLLRKHLPSVTYLRLDGSVPASLRQDIVNNFNSDPSIDVLLLTTLVGGLGLN 1812

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   
Sbjct: 1813 LT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMSLQ 1866

Query: 185  RTKSTIQDLLLNA 197
            + K    + +++A
Sbjct: 1867 KFKILTANTVVSA 1879


>gi|302812321|ref|XP_002987848.1| hypothetical protein SELMODRAFT_426581 [Selaginella moellendorffii]
 gi|300144467|gb|EFJ11151.1| hypothetical protein SELMODRAFT_426581 [Selaginella moellendorffii]
          Length = 437

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 13/130 (10%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD------KDPCTIQEWN-EGKIPLLFAHPASCG 120
               + A     D  R  +   Q   +D      K    I  +N + ++ +L     + G
Sbjct: 288 KKLQLEAQEKQHDFERGVQEIGQSAKIDGSMNMTKREAEISRFNRDPEVMVLLLSLRAAG 347

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    + ++   +WW+     Q I+R       +    R V V   + + +++E +
Sbjct: 348 CGLNL-VAASCVLLIDMWWNPTTEDQAIDR-----AHRIVQTRPVHVTKFMVKESVEEQI 401

Query: 181 LQRLRTKSTI 190
           L     K  +
Sbjct: 402 LAIQEKKKKM 411


>gi|114666515|ref|XP_512012.2| PREDICTED: chromodomain helicase DNA binding protein 3 [Pan
            troglodytes]
          Length = 1846

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVA----------YHFNSDLARLQKAFPQGR 92
            E         K+  L+ ++ K       +++           Y+F        +    G 
Sbjct: 1046 EGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQVTCALSCLYNFLDYEGYKYERIDGGI 1105

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ F   W+     Q    
Sbjct: 1106 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQA--- 1161

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V +Y  + + +++E + Q  + K  +
Sbjct: 1162 --FSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1199


>gi|299469770|emb|CBN76624.1| Essential abundant protein involved in regulation of transcription
            [Ectocarpus siliculosus]
          Length = 2331

 Score = 80.8 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 68   AAPIIVAYHFNSDLA-----RLQKAFPQGRTLD--------KDPCTIQEWN-EGKIPLLF 113
                +V     + L       L+  FP  + L         +    +  ++ +  + +L 
Sbjct: 2128 GRKCLVFAQHKAALDVTESALLRPCFPGVKYLRMDGSVSQAERAAAVDRFSADPSVAILL 2187

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    GLNL    +++VF    W+ +   Q ++R       + G ++AV VY LIA 
Sbjct: 2188 LTTRVGHLGLNL-SAASMVVFLEHDWNPQVDLQAMDR-----AHRLGQRKAVNVYRLIAA 2241

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +++++ VL+    K  +   +++
Sbjct: 2242 DSVEQRVLRLQGHKLQVAAAVVS 2264


>gi|332022432|gb|EGI62740.1| Chromodomain-helicase-DNA-binding protein 7 [Acromyrmex echinatior]
          Length = 4236

 Score = 80.8 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            Y +     R++    Q             +      +      + G G+NL    + ++ 
Sbjct: 2083 YPYERIDGRIRGNLRQAAIDRYSKPDSDRF------VFLLCTKAGGLGINLT-AADTVII 2135

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+ +   Q   R       + G ++ V VY L+ +NT +  +  +   K  +   +
Sbjct: 2136 YDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAI 2190

Query: 195  LNAL 198
            L ++
Sbjct: 2191 LQSM 2194


>gi|38014266|gb|AAH01474.2| RAD54L2 protein [Homo sapiens]
          Length = 1159

 Score = 80.8 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 411 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 470

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 471 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 529

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  F+Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 530 WNPCHDAQAV-----CRVYRYGQKKPCFIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 584


>gi|145491211|ref|XP_001431605.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398710|emb|CAK64207.1| unnamed protein product [Paramecium tetraurelia]
          Length = 654

 Score = 80.8 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
           D+ ++ L           I++   F   L  L+                  +      I 
Sbjct: 453 DKFLQKLSE-----GQHQILIFSQFTMMLNILEDYCNFRGYEYCRIDGETEIQSRDDQIA 507

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+        +      + G G+NL    + ++ +   ++ +   Q ++R       + G
Sbjct: 508 EFTAPDSKKFIFLLSTRAGGLGINL-ATADTVIIYDSDFNPQMDMQAMDR-----AHRIG 561

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTK 187
            K  V VY +  ++T++E +++R + K
Sbjct: 562 QKSRVMVYRMACEHTVEEKIIERQQIK 588


>gi|302753908|ref|XP_002960378.1| hypothetical protein SELMODRAFT_73550 [Selaginella moellendorffii]
 gi|300171317|gb|EFJ37917.1| hypothetical protein SELMODRAFT_73550 [Selaginella moellendorffii]
          Length = 159

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 20/139 (14%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHP 116
               ++   + S L  ++                    K    I+ +  +  + ++    
Sbjct: 5   GEKSLIFSQWTSMLNLIEPELEGAGIQFSRIDGSMSAGKRVAAIKRFSEDPDVVVMLISL 64

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLNL    ++L+   +WW+     Q I+R       + G  R V V   + + T+
Sbjct: 65  RA---GLNLVAASHVLLM-DMWWNPTTEDQAIDR-----THRIGQTRPVHVTRFVVKQTV 115

Query: 177 DELVLQRLRTKSTIQDLLL 195
            E VL+    K  + + + 
Sbjct: 116 QEHVLEIQEKKKKLVEFVF 134


>gi|15228256|ref|NP_188282.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
          Length = 638

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +  +     +   GLN+    + ++   LWW+     Q I+R       + G  RAV
Sbjct: 504 SGLVCAMLMSLKAGNLGLNM-VAASHVILLDLWWNPTTEDQAIDR-----AHRIGQTRAV 557

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
            V  +  +NT++E +L     K  I
Sbjct: 558 TVTRIAIKNTVEERILTLHERKRNI 582


>gi|255953435|ref|XP_002567470.1| Pc21g04240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589181|emb|CAP95321.1| Pc21g04240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1220

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1117 VLLISLRAGGVGLNLTSASNVFIM-DPWWSFAIEAQAIDRV-----HRMGQTRDVNVTRF 1170

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +++I+  +L+    K  I   L
Sbjct: 1171 VVKDSIEGRMLRVQERKMNIAGSL 1194


>gi|114589754|ref|XP_516811.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 6 [Pan troglodytes]
          Length = 1008

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 824 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLVEIPLKASGFVFTRLDGS 883

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 884 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 942

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 943 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 980


>gi|326912863|ref|XP_003202765.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Meleagris gallopavo]
          Length = 861

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 27/185 (14%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           ++    IEA        K L      +Y  +  H   +  +  K L+++ +  +      
Sbjct: 306 EIGDHIIEASGKLCLLDKLL----SFLY--DGGHRVLLFSQMTKLLDILQDYMDYRG--- 356

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            Y +     RL      G    ++    I+ + +  I +        G G+NL    + +
Sbjct: 357 -YSY----ERL-----DGSVRGEERHLAIKNFGQQPIFVFLLSTR-AGVGMNLT-AADTV 404

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +F    ++ +   Q I R       + G  + V +  LI ++T++E++ +R  +K  + +
Sbjct: 405 IFTDSDFNPQNDLQAIAR-----AHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTN 459

Query: 193 LLLNA 197
            ++  
Sbjct: 460 AIVEG 464


>gi|321478915|gb|EFX89871.1| DNA excision repair protein ERCC-6-like protein [Daphnia pulex]
          Length = 1584

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRT-LDKDPCT 100
              K+  +E +++  K     +++       L  L+              G T +      
Sbjct: 1033 SGKLLVVESLLKIWKEQNHRVLLFSQSRQMLDILECFIRQQSYNYLRLDGTTSIGSRQPM 1092

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+++N    I +        G         N ++ +   W+     Q  ER       + 
Sbjct: 1093 IEKYNKSADIFVFLLTTRVGG--------ANRVIIYDPDWNPSTDTQARERAW-----RI 1139

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G ++ V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 1140 GQQKDVTIYRLLTSGTIEEKIYHRQIFKQYLTNRVLKDPKQR 1181


>gi|320588829|gb|EFX01297.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 1166

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
              ++V  H    L  LQ  F              + ++    + ++N +    +     
Sbjct: 648 GDKVLVFSHTVRLLQMLQHLFHSTSYSVSYLDGSLSYEERQRVVDDFNTDPAQFVFLIST 707

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N +V     W+     Q        R  + G  R V V+ L++  TI
Sbjct: 708 RAGGVGLNIT-SANKVVIVDPHWNPAYDLQA-----QDRAYRIGQVRDVDVFRLVSAGTI 761

Query: 177 DELVLQRLRTKSTIQD 192
           +E+V  R   K    +
Sbjct: 762 EEIVYARQIYKQQQAN 777


>gi|270013006|gb|EFA09454.1| hypothetical protein TcasGA2_TC010670 [Tribolium castaneum]
          Length = 1618

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------------------AF 88
            +  K++ L  II +  A    ++V       L  +++                       
Sbjct: 912  NSAKMEILFCIIRESIALGDRLLVFSQSLITLDLIEQFLQMNVVPGDTQKWCRNTNYYRL 971

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +  +    I E+N   KI +      +   G+NL  G N +V     W+     Q 
Sbjct: 972  DGSTSALEREKLINEFNSNPKIHVFLVSTRAGSLGINL-IGANRVVVLDASWNPCHDTQA 1030

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      R  + G ++  FVY L+  N +++ +  R   K  + D +++
Sbjct: 1031 V-----CRVYRYGQRKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRVVD 1074


>gi|114589744|ref|XP_001138277.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 1 [Pan troglodytes]
 gi|114589746|ref|XP_001138954.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 5 [Pan troglodytes]
 gi|114589748|ref|XP_001138604.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 2 [Pan troglodytes]
 gi|114589750|ref|XP_001138690.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 3 [Pan troglodytes]
 gi|114589752|ref|XP_001138877.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 4 [Pan troglodytes]
          Length = 1009

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
            D E       +  + AL  + +K      +V   F + L+ ++                
Sbjct: 825 SDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLVEIPLKASGFVFTRLDGS 884

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 885 MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +R       + G K+ V +   I +++++E +L+    K  + 
Sbjct: 944 DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981


>gi|45357049|gb|AAS58478.1| SNF2P [Hordeum vulgare subsp. vulgare]
          Length = 882

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 32/175 (18%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------- 85
           Y+E +H  +    K+  L++++EK +     +++       L  LQ              
Sbjct: 354 YEEGEHLVQ-ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLD 412

Query: 86  ------KAFPQGRTLDKDPC---TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                 + F   R     P       + N     +      + G GLNL  G + ++F+ 
Sbjct: 413 GSVRAEERFAAIRNFSSQPTKGVVRDDNNPSGAFIFMISTRAGGVGLNL-IGADTVIFYE 471

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  + 
Sbjct: 472 QDWNPQADKQALQR-----THRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLS 521


>gi|327303684|ref|XP_003236534.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326461876|gb|EGD87329.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1167

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   + +   PI  ++   + S L  ++ A  +       
Sbjct: 982  LYEGPHTKTKALISHLLDTAEDNKKSSRQPPIKSVIFSAWTSHLDLIEIALEENGLTGYT 1041

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +   +I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1042 RLDGTMSLKQRNASIETFSTDDNVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPAAIA 1100

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R+      + G  R V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1101 QAVDRV-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1146


>gi|330982918|gb|EGH81021.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 281

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 172 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 231

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++   Q         G T D+    I ++  GK+P+      + G GLNL 
Sbjct: 232 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNLT 281


>gi|195377834|ref|XP_002047692.1| GJ11780 [Drosophila virilis]
 gi|194154850|gb|EDW70034.1| GJ11780 [Drosophila virilis]
          Length = 1679

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++N       +      + G GLNLQ   + +V F   W+  +  Q      
Sbjct: 1186 EDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA----- 1239

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1240 QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1284


>gi|164428480|ref|XP_965771.2| hypothetical protein NCU00631 [Neurospora crassa OR74A]
 gi|157072163|gb|EAA36535.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1044

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 14/156 (8%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
             + ++  K   +EK      + ++        A        RL +      T D    + 
Sbjct: 866  SEGKRPTKVKPEEKEDWKPTVFDQL--RKEANASRNQDARDRLLQY-----TWDHWQDSA 918

Query: 102  QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +  +  + +L     +   GLNL     ++V    +W+     Q ++R       + G
Sbjct: 919  KAFVEDPDVKVLLVSLKAGNAGLNLTVASRVIV-CDPFWNPFIEDQAVDR-----AYRIG 972

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +R V VY ++ Q TI++ +++    K  I +  L+
Sbjct: 973  QQREVHVYKILVQETIEDRIIELQNLKRNIVETALD 1008


>gi|226292675|gb|EEH48095.1| chromodomain helicase DNA binding protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 690

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTL 94
           K+ + +   K+  L  ++ +   N    ++   F   +  L+              G T 
Sbjct: 482 KNDEWMQSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTVQMPFFRLDGSTS 541

Query: 95  DKDPCTI-QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D   I   ++E  +IP+      + G G+NL    N ++ F   ++ +E  Q      
Sbjct: 542 VEDRQAILDAFHEQVEIPVFLLSTKAGGAGVNL-ACANKVIIFDSSFNPQEDVQA----- 595

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 596 ENRAHRVGQTREVEVVRLVTRGTIEEQMYALGQTKLALDQRV 637


>gi|47226328|emb|CAG09296.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 671

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 80/219 (36%), Gaps = 35/219 (15%)

Query: 5   HKFQRELYCDLQGEN-------IEAFNS---ASKTVKCLQLANGAVYYDEEKH-----WK 49
            + + ++   L  +        I+  NS   A+ +    QLA G     EEK      + 
Sbjct: 449 RRLKSDVLSQLPAKQRKVVTVTIDGINSRIKAALSAAAKQLAKGHPNKKEEKEALLVFYN 508

Query: 50  EVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
              + K++A+   I           +V  H    L  +     +         G T   +
Sbjct: 509 HTAEAKLQAIMEYITDMLEGGREKFLVFAHHKLVLDHITAELEKKNVVYIRIDGSTPSAE 568

Query: 98  PCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + +++       +      +   GL L +  ++++F  L+W+     Q  +R+    
Sbjct: 569 RQQLCEKFQFSSSSCVAVLSITAANMGLTL-HSADLVIFAELFWNPGVLIQAEDRV---- 623

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G    V ++YL+A+ + D+ +   ++ K  + + +
Sbjct: 624 -HRIGQTNNVNIHYLVAKGSADDHLWPLIQEKMNVLEQV 661


>gi|195054603|ref|XP_001994214.1| GH23502 [Drosophila grimshawi]
 gi|193896084|gb|EDV94950.1| GH23502 [Drosophila grimshawi]
          Length = 1982

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 29/169 (17%)

Query: 52   HDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKD 97
            H  K+ AL+ ++         E  +    ++     + L       L+K  P+   L  D
Sbjct: 1746 HSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHDLLRKHLPRVTYLRLD 1805

Query: 98   PCT--------IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       +  +N +  I +L       G GLNL  G + ++F    W+  +  Q +
Sbjct: 1806 GSVPASMRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIFVEHDWNPMKDLQAM 1864

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G K+ V VY LI +N+++E ++   + K    + +++A
Sbjct: 1865 DR-----AHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKIVTANTVVSA 1908


>gi|169602773|ref|XP_001794808.1| hypothetical protein SNOG_04389 [Phaeosphaeria nodorum SN15]
 gi|160706250|gb|EAT88149.2| hypothetical protein SNOG_04389 [Phaeosphaeria nodorum SN15]
          Length = 1065

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
              K+ AL  ++++  AN    +V   F S +  L   F +             + +   
Sbjct: 848 DSGKVTALFALLKQYKANGDRALVFSQFTSVMDILSWVFDEHAIDFMRMDGSTPIAERQS 907

Query: 100 TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +   + I +      S G G+NL    N +V F   ++ ++  Q        R  +
Sbjct: 908 LMDAFYADESIGVFMISTKSGGAGINL-ACANKVVIFDSSFNPQDDVQA-----ENRAHR 961

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R V V  L+ + T++E +     +K  +  ++
Sbjct: 962 VGQTREVEVVRLVTRGTVEEQIYALGVSKLELDKMV 997


>gi|212533265|ref|XP_002146789.1| DNA excision repair protein (Rad5), putative [Penicillium marneffei
            ATCC 18224]
 gi|210072153|gb|EEA26242.1| DNA excision repair protein (Rad5), putative [Penicillium marneffei
            ATCC 18224]
          Length = 1175

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCT 100
               KI AL   ++     +  +V   F S L  +     +                    
Sbjct: 973  TSAKIHALITHLMRLPPNSKSVVFSQFTSFLDLIGPQLTKAGITFLRLDGSMPQKARAEV 1032

Query: 101  IQEWNEGKI-----------------------------PLLFAHPASCGHGLNLQYGGNI 131
            ++++N  +I                              +L     + G GLNL    N 
Sbjct: 1033 LRQFNRTEIYEEELELDEDAPVRGEAAATHSQTPQPSPNVLLISLRAGGVGLNLT-AANN 1091

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  R V V   + +++I+  +L+    K  I 
Sbjct: 1092 VFMMDPWWSFAVEAQAIDRV-----HRMGQLREVSVTRFVVKDSIEVRMLRVQEKKMNIA 1146

Query: 192  DLL 194
              L
Sbjct: 1147 GSL 1149


>gi|221053540|ref|XP_002258144.1| SNF2-family protein [Plasmodium knowlesi strain H]
 gi|193807977|emb|CAQ38681.1| SNF2-family protein, putative [Plasmodium knowlesi strain H]
          Length = 1048

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T+++     +  N   I +      + G GLNL    N ++     W+        +R  
Sbjct: 929  TIERQKIIKRFSNNDNIFIFLLTTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQA 982

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              R  + G K  V++Y L  +NTI+E +L+  + K  +   
Sbjct: 983  EDRVHRLGQKNEVYIYRLCCKNTIEETILRCCKAKLHLDQA 1023


>gi|194745043|ref|XP_001955002.1| GF18554 [Drosophila ananassae]
 gi|190628039|gb|EDV43563.1| GF18554 [Drosophila ananassae]
          Length = 1921

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 71/187 (37%), Gaps = 34/187 (18%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLARL 84
            QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  +
Sbjct: 1674 QLAQSNSSLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIV 1728

Query: 85   QK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
            +                       +    +  +N +  I +L       G GLNL  G +
Sbjct: 1729 EHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GAD 1787

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K   
Sbjct: 1788 TVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILT 1842

Query: 191  QDLLLNA 197
             + +++A
Sbjct: 1843 ANTVVSA 1849


>gi|145207323|gb|AAH78216.2| Zranb3 protein [Danio rerio]
          Length = 541

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRT----------- 93
           +K+    K  A++  I+   ++     +V  H  S L    +A  + +            
Sbjct: 312 YKQTAVAKAGAVKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPS 371

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++     +  N+    +      + G GL      + +VF  L+W+    +Q  +R   
Sbjct: 372 AERIQLVHRFQNDPDTRVAVLSIQAAGQGLTFT-AASHVVFAELYWNPGHIKQAEDR--- 427

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G    V ++YLIA+ T D ++   L  K T+    LN  K
Sbjct: 428 --AHRIGQTATVHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKK 471


>gi|28278128|gb|AAH45534.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 [Homo
            sapiens]
 gi|167773841|gb|ABZ92355.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1
            [synthetic construct]
 gi|190690133|gb|ACE86841.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 protein
            [synthetic construct]
 gi|190691507|gb|ACE87528.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 protein
            [synthetic construct]
          Length = 1028

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
            +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 853  LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E+N    I +      + G G+NL    N+++   +  +    +Q  +R       
Sbjct: 913  HLIDEFNTDMDIFVFLLSTKAGGLGINLT-SANVVILHDIDCNPYNDKQAEDRC-----H 966

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  +   V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 967  RVGQTKEALVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|195089759|ref|XP_001997485.1| GH22211 [Drosophila grimshawi]
 gi|193891548|gb|EDV90414.1| GH22211 [Drosophila grimshawi]
          Length = 1076

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 29/169 (17%)

Query: 52   HDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKD 97
            H  K+ AL+ ++         E  +    ++     + L       L+K  P+   L  D
Sbjct: 840  HSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHDLLRKHLPRVTYLRLD 899

Query: 98   PCT--------IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       +  +N +  I +L       G GLNL  G + ++F    W+  +  Q +
Sbjct: 900  GSVPASMRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIFVEHDWNPMKDLQAM 958

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G K+ V VY LI +N+++E ++   + K    + +++A
Sbjct: 959  DR-----AHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKIVTANTVVSA 1002


>gi|189240994|ref|XP_968321.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
            protein [Tribolium castaneum]
          Length = 1784

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 30/169 (17%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------------------AF 88
            +  K++ L  II +  A    ++V       L  +++                       
Sbjct: 1047 NSAKMEILFCIIRESIALGDRLLVFSQSLITLDLIEQFLQMNVVPGDTQKWCRNTNYYRL 1106

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +  +    I E+N   KI +      +   G+NL  G N +V     W+     Q 
Sbjct: 1107 DGSTSALEREKLINEFNSNPKIHVFLVSTRAGSLGINL-IGANRVVVLDASWNPCHDTQA 1165

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +      R  + G ++  FVY L+  N +++ +  R   K  + D +++
Sbjct: 1166 V-----CRVYRYGQRKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRVVD 1209


>gi|221091560|ref|XP_002158128.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 590

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR-TLDKDPCTIQEWN 105
             KE   + ++ L  ++  +N    I  +   S L   Q     G  ++ K    +  +N
Sbjct: 355 EIKENDPDLLQRLMSVVLVSNYTQTIDLFEKLSRLRGYQYVRLDGSMSIKKRMKVVDRFN 414

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      L      + G GLNL  G N LV F   W+     Q + R+      + G K+
Sbjct: 415 DPNSNDFLFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAMARVW-----RDGQKK 468

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                      TI+E +LQR   K  +   +++
Sbjct: 469 E--------TGTIEEKILQRQTHKKALSSCVVD 493


>gi|312384392|gb|EFR29129.1| hypothetical protein AND_02166 [Anopheles darlingi]
          Length = 2232

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 86   KAFPQGRTLDKDPCT-IQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G+T        I+ +N+ +   +        + G G+NL    N ++     W+ 
Sbjct: 1207 YYRLDGKTNKSIRHDLIRSFNDPRNTRVKCFLISAKAGGQGINLT-AANRVIILDTSWNP 1265

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               QQ I RI      + G KR  +VY L+A  T++E V  R  TK  +   +++
Sbjct: 1266 SNDQQNIFRIF-----RLGQKRKCYVYRLLAMGTMEEKVYSRSVTKQALSFRVVD 1315


>gi|126433435|ref|YP_001069126.1| SNF2-related protein [Mycobacterium sp. JLS]
 gi|126233235|gb|ABN96635.1| SNF2-related protein [Mycobacterium sp. JLS]
          Length = 1122

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 79/197 (40%), Gaps = 24/197 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA- 66
           + E +  + G +  A+ +A +    + +   ++        + +   K++ L  I+E+A 
Sbjct: 656 EVEEWVPMSGADASAYRAAVEQRNFMAMRQASM-------RQGLKSSKMQRLIEIVEEAE 708

Query: 67  -NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEG-KIPLLFAHP 116
            N   ++V  HF   L+ + +  P              +    + +++   K  +L A  
Sbjct: 709 DNGRRVVVFSHFLDVLSDVARHMPGRVVGPLTGSVAASQRQVMVDDFSAAQKGAVLVAQI 768

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   +++V            Q I R       + G   +V V+ L++   +
Sbjct: 769 VAGGVGLNIQ-AASVVVICEPQLKPTTEWQAIAR-----AHRMGQLESVQVHRLLSDEGV 822

Query: 177 DELVLQRLRTKSTIQDL 193
           D+ V + L TK  + + 
Sbjct: 823 DQRVREILATKKLLFES 839


>gi|195110153|ref|XP_001999646.1| GI22957 [Drosophila mojavensis]
 gi|193916240|gb|EDW15107.1| GI22957 [Drosophila mojavensis]
          Length = 1948

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 52   HDEKIKALEVII---------EKANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKD 97
            H  K+ AL+ ++         E  +    ++     + L       L+K  P    L  D
Sbjct: 1713 HSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHDLLRKHLPSVTYLRLD 1772

Query: 98   PCT--------IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       +  +N +  I +L       G GLNL  G + ++F    W+  +  Q +
Sbjct: 1773 GSVPASLRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIFVEHDWNPMKDLQAM 1831

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G K+ V VY LI +N+++E ++   + K    + +++A
Sbjct: 1832 DR-----AHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKILTANTVVSA 1875


>gi|94264307|ref|ZP_01288100.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
 gi|93455273|gb|EAT05483.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
          Length = 1022

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSD----LARLQK- 86
           +A  A    ++   + V   KI  L  I+++    +    +V   +         RL++ 
Sbjct: 590 MACDAAGLVDK---ESVGSPKIDELAQILDEVCLQSGLKAVVFSQWELMTRMVEQRLRRL 646

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    G    K    ++ +      L+F    + G GLNLQ   ++LV   + W+ 
Sbjct: 647 GIGYVRLHGGVPTAKRGDLLERFRSDDSVLVFLSTDAGGVGLNLQ-SASVLVNLDVPWNP 705

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +Q   RI      + G    V +  ++A N+ +E VL  ++ K  + D ++
Sbjct: 706 AVLEQRNGRI-----HRLGQPNKVQIITMVAANSYEEQVLSLVQNKQALFDQVI 754


>gi|224009730|ref|XP_002293823.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970495|gb|EED88832.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 487

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 32/172 (18%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL--------- 84
           A+GA               K   L+ ++E+   +   +++     S L  +         
Sbjct: 322 ASGAHMGSAHPQLLIRASGKFALLDRMLERLFKDKHQVLIFSQMTSLLNVIEDYLLFRQW 381

Query: 85  QKAFPQGRT-LDKDPCTIQEWNEGKIP--------------LLFAHPASCGHGLNLQYGG 129
           +     G T +D+    +  +N  K                +      + G G+NL    
Sbjct: 382 KYCRIDGSTKIDERQRQMDVFNSEKTAGKGGTRNDGDDRHFVFLLSTRAGGLGINL-ATA 440

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           +  + F   W+  +  Q ++R       + G  R V VY L+  N++D  ++
Sbjct: 441 DTCIIFDSDWNPHQDSQAMDRC-----HRIGQNRPVAVYRLLTVNSVDVEMM 487


>gi|147866122|emb|CAN83037.1| hypothetical protein VITISV_034336 [Vitis vinifera]
          Length = 1054

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----TLD 95
           Y+E +H  +    K+  L+ +++K   +   +++       L  LQ      +     LD
Sbjct: 434 YEEGEHLVQ-ASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLD 492

Query: 96  KDPCTIQEW---------------NEGKIP----LLFAHPASCGHGLNLQYGGNILVFFS 136
                 + +               N   +     +      + G GLNL    + ++F+ 
Sbjct: 493 GSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNL-VAADTVIFYE 551

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ +  +Q ++R       + G    V    L+   T++E++++R   K  +   ++ 
Sbjct: 552 QDWNPQVDKQALQR-----AHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVG 606

Query: 197 AL 198
            +
Sbjct: 607 EV 608


>gi|146174330|ref|XP_001019329.2| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|146144785|gb|EAR99084.2| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1016

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 52  HDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQK--AFPQGRTLDKDPCTIQEW 104
           +  K+  L+ ++     EK  A  +++   F + L +            +++    + E+
Sbjct: 358 NSGKMVVLDKLLKKLYQEKEKAHQVLIFTQFTTCLGKAWNYCRIDGSTEVNEREQMMNEF 417

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                   +      + G G+NL    N +V F   ++ +   Q ++R       + G  
Sbjct: 418 QRDDSDKFVFLLSTRAGGLGINLTK-ANFVVIFDSDFNPQIDLQAMDR-----AYRIGQT 471

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V V  LI Q T++E +++R   K  +  L++ + + 
Sbjct: 472 REVKVIRLITQFTVEEKIIERQGIKLKLDQLIIQSGRS 509


>gi|10436220|dbj|BAB14759.1| unnamed protein product [Homo sapiens]
          Length = 361

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDP 98
           +   K + L  I+ +       +++   F   L  L         +     G+T + +  
Sbjct: 186 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 245

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N    I +      + G G++L    N+++   +  +    +Q  +R       
Sbjct: 246 HLIDEFNTDMDIFVFLLSTKAGGLGIDLT-SANVVILHDIDCNPYNDKQAEDRC-----H 299

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 300 RVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 336


>gi|238853530|ref|ZP_04643903.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833851|gb|EEQ26115.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 504

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSD-LARLQKAFP--------QGRTLDKDPCT 100
             +KI+ +  I   ++     +IV   F +  L  L K  P           + ++    
Sbjct: 309 DSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLNKKLPFLADDIISGDLSSNQRQEV 368

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++       +L     + G GLN+Q   N ++     W      Q I R       + 
Sbjct: 369 IDKFSENPNQNVLLVQIDAGGFGLNIQ-AANRVILCEPQWKPSTENQAISR-----AYRM 422

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 423 GQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 455


>gi|315446159|ref|YP_004079038.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
 gi|315264462|gb|ADU01204.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
          Length = 1124

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 81/198 (40%), Gaps = 26/198 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA- 66
           + + +  +   ++ A+ +A +    + +        +    +  +  K++ L  I+E+A 
Sbjct: 656 EVDEWVPMSPADVSAYRAAVEQRNFMAMR-------QAGMRQGRNSTKMQRLIEIVEEAE 708

Query: 67  -NAAPIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEG-KIPLLFAH 115
            N   ++V  HF   L  + +  P GR           ++    + +++   K  +L A 
Sbjct: 709 DNGRRVVVFSHFLDVLNDVARHMP-GRVFGPLTGSVAANQRQVLVDDFSAAQKGAVLVAQ 767

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+Q   +++V            Q I R       + G   +V V+ L++   
Sbjct: 768 IVAGGVGLNIQ-AASVVVICEPQLKPTTEWQAIAR-----AHRMGQLESVQVHRLLSDEG 821

Query: 176 IDELVLQRLRTKSTIQDL 193
           +D+ V + L TK ++ + 
Sbjct: 822 VDQRVREILATKKSLFES 839


>gi|302677518|ref|XP_003028442.1| hypothetical protein SCHCODRAFT_17379 [Schizophyllum commune H4-8]
 gi|300102130|gb|EFI93539.1| hypothetical protein SCHCODRAFT_17379 [Schizophyllum commune H4-8]
          Length = 939

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 18/163 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                E   + +K LE++ E  A     IV   + S L  +             F     
Sbjct: 731 SDDDIEPSTKMLKLLELLREWDATGDKTIVYSQWTSMLDLVDTVFSIHGISALRFDGRMD 790

Query: 94  LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    +  +     P ++         GLNL    N ++   L W+     Q  +R  
Sbjct: 791 RQQRDAVLAAFKRPGGPKVILISTKCGSVGLNL-VSANRVINLDLSWNYAAESQAYDRC- 848

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G  + V++  L+ ++TI+E +L+    K  + +  L
Sbjct: 849 ----HRIGQDKPVWIKRLVVEDTIEERMLKLQDVKVGLAEAAL 887


>gi|224110590|ref|XP_002315568.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864608|gb|EEF01739.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1050

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N+  +  + L +A                  G  Y   +   
Sbjct: 421 QMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLV 480

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP- 98
                  +    +   K   + +++       L  L+              G T  +D  
Sbjct: 481 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 540

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N+   +         + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 541 ASIDAFNKPGSEKFCFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 594

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    + TI+E V++R   K  +  L++ 
Sbjct: 595 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 634


>gi|164422685|ref|XP_001727986.1| hypothetical protein NCU10809 [Neurospora crassa OR74A]
 gi|157069777|gb|EDO64895.1| predicted protein [Neurospora crassa OR74A]
          Length = 702

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP-C 99
           +V D  ++AL+           ++   + S L  L +   Q         GRT + +   
Sbjct: 532 KVRDSVLQALQ----SQTGIKHLIFSAWTSSLRYLAQLMQQAGIPHAQIDGRTSNAERLR 587

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ + E  ++P+L     +   GL L    ++ +     W+    +Q I R       +
Sbjct: 588 HIKAFQEDSQVPVLLMSIGTGAVGLTLTAASHVHI-IEPQWNPSVEEQAIGR-----ALR 641

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            G  + V V   I + T+++ +L   + K  I 
Sbjct: 642 MGQTKEVVVTRYIMKGTVEQSILSLQQKKKNIS 674


>gi|303287156|ref|XP_003062867.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455503|gb|EEH52806.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1542

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 43/207 (20%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
           E   A   A++  K    A  A   +           K++ L+ ++ +  A     ++  
Sbjct: 684 EEAFATQQAARLAKPRTTATAAQLVNCSG--------KLQLLDKLLPRLKAGGHRALIFS 735

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW-----------------NEGK 108
                L  L+          +    G T       I  +                 ++  
Sbjct: 736 QMTRVLDVLEDYCRSRKHSYERLDGGVTGRARQAAIDRFCDGGGGDGGGENAAGAGDDDG 795

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L      + G G+NL    + ++ F   W+ +   Q + R       + G  + V VY
Sbjct: 796 AFLFLLSTRAGGQGINL-VAADTVIVFDSDWNPQNDAQALAR-----AHRIGQTKPVQVY 849

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+ + T +  +L R   K  ++  + 
Sbjct: 850 RLVMRATYEREMLDRAAMKLGLEQAIF 876


>gi|313228772|emb|CBY17923.1| unnamed protein product [Oikopleura dioica]
          Length = 985

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF---NSDLAR------LQKAFPQGRTL 94
           K    ++  K K L+ ++ K       +++   F      + R      ++     G T 
Sbjct: 743 KKDDILNSGKFKVLDTLLPKLFEEGHRVLLFSQFVIMMDIMERYMTARKIKYMRLDGSTP 802

Query: 95  DKDPCT-IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +D    I  +N   +I L      + G G+NL     +++   +  +    +Q  +R  
Sbjct: 803 VEDRLDMIDTFNADSEISLFMVSTRAGGLGINLTSADTVIIH-DIDPNPYNDKQAEDRC- 860

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  + V +  LI ++TI+  + +    K  ++  +
Sbjct: 861 ----HRVGQTKQVNIIRLIVKDTIEVRMRKLAVEKLNLESKM 898


>gi|300175571|emb|CBK20882.2| unnamed protein product [Blastocystis hominis]
          Length = 571

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ---------KAFP 89
            D+ +        K++A+E+++          I+V   +   L  L              
Sbjct: 320 DDQNQRDFTSQSVKMEAVELLLASILSHTDEQILVISSYTQILDYLGSFCDSKKWGYFRL 379

Query: 90  QGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T + +    +  +N       L      + G GLN+  G + +V     W+     Q
Sbjct: 380 DGQTDVAQRQSLVNSFNHRYTSKRLFILSARAGGVGLNIT-GASRVVMLEPAWNPAIDLQ 438

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R       + G  R VFVY L    +I+E++LQR   K  I D+ ++
Sbjct: 439 SIARAW-----RFGQTRRVFVYRLFVAGSIEEVMLQRQLLKKAIADVAVD 483


>gi|221066987|ref|ZP_03543092.1| helicase domain protein [Comamonas testosteroni KF-1]
 gi|220712010|gb|EED67378.1| helicase domain protein [Comamonas testosteroni KF-1]
          Length = 503

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGK 108
           E +        +I+   + S +  L++A                L +    +  +  +  
Sbjct: 331 ETVQAMGEDDKLIIFCEYMSTVEALKQALASLGVGCVSLVGSDSLKRRQAAVDAFQRDAS 390

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +      + G G+ L    NI+ F S+ W     +Q  +R       + G  R V V 
Sbjct: 391 IKVFIGTTMAAGVGITLT-AANIVAFASMPWTPALMRQAEDR-----AYRLGQIRDVLVL 444

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             I Q TIDE VLQ+   K T +  ++ A KK
Sbjct: 445 VPIIQGTIDEGVLQQQENKHTTEIEVVEAAKK 476


>gi|322706831|gb|EFY98411.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1158

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 27/168 (16%)

Query: 51   VHDEKIKAL-EVIIEKANAA---------PIIVAYHFNSDLARLQKAFPQGR-------- 92
                K KAL E +++   A+           +V   + S L  ++ A             
Sbjct: 974  GPHTKTKALVEDLLKSKAASQASPDEPPFKSVVFSGWTSHLDLIELALKAAGITFVRLDG 1033

Query: 93   --TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T       ++++ E   + ++     + G GLNL   GN +      ++     Q I+
Sbjct: 1034 SMTRMARTAAMEKFREDNTVEVILVSIMAGGLGLNLT-AGNTVYVMEPQYNPAAEAQAID 1092

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R+      + G KR V     I Q++ +E +L+    K  +  L ++ 
Sbjct: 1093 RV-----HRLGQKRPVRTVRYIMQDSFEEKMLELQEKKMKLASLSMDG 1135


>gi|209880686|ref|XP_002141782.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
 gi|209557388|gb|EEA07433.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
          Length = 854

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------------AFP 89
                    K+  +  IIEK        +V  H    L  +++                 
Sbjct: 684 DELVLGDSCKLIKMHQIIEKKVIRREKCLVFCHHTMLLDIVEEYIKLKFGDKTDFYIRLD 743

Query: 90  QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +D     ++++       +      + G GLNL    + ++   + ++ +     I
Sbjct: 744 GTTPIDTRQKLVEQFQTSSSTLIFLLSTKAAGQGLNLT-AASTVIMMDIDYNPQ-----I 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ER    R  + G  + V ++ LI +N+I+E +L+   +K ++   
Sbjct: 798 ERQAEDRVHRLGQSKDVSIFKLICRNSIEEDILKCCESKLSLDAA 842


>gi|115473589|ref|NP_001060393.1| Os07g0636200 [Oryza sativa Japonica Group]
 gi|50508331|dbj|BAD30182.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a-like [Oryza sativa Japonica Group]
 gi|113611929|dbj|BAF22307.1| Os07g0636200 [Oryza sativa Japonica Group]
 gi|215697224|dbj|BAG91218.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 747

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQ 102
             +  L  IIE       ++  H  S L  + +   + +              +      
Sbjct: 556 AVLDYLGTIIEA--ECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTD 613

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I        + G GL L    + ++F  L W   +  Q  +R       + G  
Sbjct: 614 FQNKDDIKAAVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDR-----AHRIGQV 667

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 668 SSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 705


>gi|47211649|emb|CAF94986.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1320

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 38/177 (21%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------------------ 85
           +  K+  L  +IE++      ++V     S L  ++                        
Sbjct: 807 NSAKMVLLFHLIEESVRKGDKLLVFSQSLSTLTVIENFLVKRPVPPSPQKDKPNQNWVRN 866

Query: 86  ---KAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                     T  +    I ++N+       +      +   G+NL  G N +V F   W
Sbjct: 867 VNYYRLDGSTTASERERLINQFNDPSNTSVWVFLLSTRAGCLGVNL-IGANRVVVFDASW 925

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q +      R  + G ++   +Y L+   T+++ +  R  +K  + D +++
Sbjct: 926 NPCHDAQAV-----CRVYRYGQRKPCHIYRLVCDFTLEKKIYDRQISKQGMSDRVVD 977


>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
          Length = 1410

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-------PQGRTL--------D 95
              K + L   +E  +     ++V   +   L  + K         P    L         
Sbjct: 1198 SVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQK 1257

Query: 96   KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I E+N+ K    +  A   +C  G++L  G + ++   + W+       +ER  +
Sbjct: 1258 QRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVWN-----PAVERQAI 1311

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1312 SRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1353


>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1410

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-------PQGRTL--------D 95
              K + L   +E  +     ++V   +   L  + K         P    L         
Sbjct: 1198 SVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQK 1257

Query: 96   KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I E+N+ K    +  A   +C  G++L  G + ++   + W+       +ER  +
Sbjct: 1258 QRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVWN-----PAVERQAI 1311

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1312 SRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1353


>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
          Length = 1465

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-------PQGRTL--------D 95
              K + L   +E  +     ++V   +   L  + K         P    L         
Sbjct: 1253 SVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQK 1312

Query: 96   KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I E+N+ K    +  A   +C  G++L  G + ++   + W+       +ER  +
Sbjct: 1313 QRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVWN-----PAVERQAI 1366

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1367 SRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1408


>gi|313768339|ref|YP_004062019.1| hypothetical protein MpV1_136 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599035|gb|ADQ91059.1| hypothetical protein MpV1_136 [Micromonas sp. RCC1109 virus MpV1]
          Length = 485

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------AFPQGRTLDKDPCTIQEWN 105
            +K++ L  +IE       ++   F  ++  +Q                ++    I+ + 
Sbjct: 307 SKKMETLFDMIESHPNEKSLIFCQFRGEMNHIQSQLKCPTFRIDGSVPKEERVKQIEGFK 366

Query: 106 EGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           + +   +      S G GLNLQ    + +  +  W+     Q I R       + G  +A
Sbjct: 367 KAQSGAVFIIQIKSGGQGLNLQEATRVYI-TAPSWNPATELQAIGR-----AHRTGQTKA 420

Query: 165 VFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNALKKE 201
           V+V  LI +      +++E ++     KS +   +LN  + E
Sbjct: 421 VYVKKLIYKECPRFVSVEEEMMALQGHKSIVCSKVLNDERIE 462


>gi|227821158|ref|YP_002825128.1| superfamily II DNA/RNA helicase and SNF2 family-related protein
           [Sinorhizobium fredii NGR234]
 gi|227340157|gb|ACP24375.1| superfamily II DNA/RNA helicase and SNF2 family-related protein
           [Sinorhizobium fredii NGR234]
          Length = 1072

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 36/179 (20%)

Query: 54  EKIKALEVIIE--KANAAPIIVA-------YHFNSDLARLQKAFPQG------RTLDKDP 98
            ++ A   I+   K+     +V          F +++ RL+             T+D   
Sbjct: 796 ARVDAAMDILRHIKSKGERALVFVENRDVQAWF-AEVVRLEFNLDTVMIINGDTTIDARK 854

Query: 99  CTIQEW-----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +     N+G   +L   P + G GL L    N ++  S WW+    +Q  +R   
Sbjct: 855 EITDRFQRHLTNDGGFDVLVLGPRAAGTGLTLT-AANHVIHLSRWWNPAVEEQCNDR--- 910

Query: 154 TRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL---NALKKETI 203
               + G  + V V+  +A        + D L+ + ++ K TI D +L    A + ET 
Sbjct: 911 --THRIGQTKPVTVHIPLAVHTRLGAGSFDCLLQRLMKRKRTIADRVLWPAEATESETR 967


>gi|195446151|ref|XP_002070651.1| GK12181 [Drosophila willistoni]
 gi|194166736|gb|EDW81637.1| GK12181 [Drosophila willistoni]
          Length = 1953

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 13   CDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
              L    ++    ++K     QL       V  +     + +   ++KA+  I+E     
Sbjct: 1707 LALSNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVE----- 1761

Query: 70   PIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHG 122
                      DL R     +      G         I   +N +  I +L       G G
Sbjct: 1762 ---------HDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLG 1812

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL  G + ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++ 
Sbjct: 1813 LNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMG 1866

Query: 183  RLRTKSTIQDLLLNA 197
              + K    + +++A
Sbjct: 1867 LQKFKILTANTVVSA 1881


>gi|189239270|ref|XP_001810058.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked
            helicase II) [Tribolium castaneum]
          Length = 1848

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 42/192 (21%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH-------FNSDLARLQKAFPQG 91
            Y D ++     H  K+  L  I+++       ++V              L R+  A   G
Sbjct: 1441 YCDGDELNNIAHSSKLFLLFEILKECEQIGDKVLVFSQSLYSLNIIEYFLGRIHDATQAG 1500

Query: 92   RTL------------------------DKDPCTIQEWNEG---KIPLLFAHPASCGHGLN 124
             T                         D      + +N     +  L      + G G+N
Sbjct: 1501 ETDSVGGYSGSWCVGLDYFRLDGSSSCDSRSMWCRTFNNPTNTRARLFLISTKAGGLGIN 1560

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    N ++ F + W+     Q I R+      + G  +  ++Y  +   T++  + +R 
Sbjct: 1561 L-VAANRVIIFDVSWNPSHDIQSIYRV-----YRFGQTKPCYIYRFVTLGTMEMKIYERQ 1614

Query: 185  RTKSTIQDLLLN 196
             TK  I   +++
Sbjct: 1615 VTKQAISKRVID 1626


>gi|193784122|dbj|BAG53666.1| unnamed protein product [Homo sapiens]
          Length = 1056

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 37/178 (20%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 310 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 369

Query: 94  ----------LDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +    I ++N+       L      +   G+NL  G N +V F   W+
Sbjct: 370 NISHFHGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWN 428

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 429 PCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 481


>gi|169616922|ref|XP_001801876.1| hypothetical protein SNOG_11638 [Phaeosphaeria nodorum SN15]
 gi|111060226|gb|EAT81346.1| hypothetical protein SNOG_11638 [Phaeosphaeria nodorum SN15]
          Length = 1020

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 75/201 (37%), Gaps = 30/201 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKALEVIIEKA 66
           ++    L+ E++   + A+K     +L         ++ W       + ++ L  I  K 
Sbjct: 815 KKTLAQLKKESLR--SKAAKQKYLRRL---------DRTWIPSAKTSKVVELLTDIKMKD 863

Query: 67  NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAH 115
           +    ++   F S L  ++          + +    T+D     ++ + ++    +L   
Sbjct: 864 STEKTLIFSQFTSLLDLVEVPLVQHKFRYQRYDGSMTMDARADAVEAFMHDPNETILLVS 923

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   GLNL +  + ++    +W+    +Q ++R       +    R V V+ ++   +
Sbjct: 924 LKAGNAGLNL-WKASQVIMLDPFWNPFVEEQAVDR-----AHRMPQNREVHVHRVLVPES 977

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +++ +      K  I    L+
Sbjct: 978 VEDRICALQDKKREIIGAALD 998


>gi|157114744|ref|XP_001652400.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108883553|gb|EAT47778.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 1445

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 45/184 (24%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------------------- 86
            H  K++ L  I+++  A    ++V       L  ++                        
Sbjct: 984  HSGKLQVLFEILKECEAIGDKLLVFSQSLYSLDVIEHFLSLVDDNTQKDDEERDSKLDKY 1043

Query: 87   -----------AFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNIL 132
                              ++      + +N+    +  L      + G G+NL    N +
Sbjct: 1044 QGSWTLGLDYFRLDGSTAIESRNAACKVFNDDSNHRARLFLISTRAGGLGINL-VAANRV 1102

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + F + W+     Q I R+      + G  +  ++Y  +A  T++E + +R  TK  I  
Sbjct: 1103 IIFDVSWNPSHDIQSIFRV-----YRFGQIKPCYIYRFLAMGTMEEKIYERQVTKQAISK 1157

Query: 193  LLLN 196
             +++
Sbjct: 1158 RVID 1161


>gi|324503939|gb|ADY41699.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 914

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           E         K+  LE I+   + +   +++       L  +Q  F   R          
Sbjct: 314 EGEHLATSSGKMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKL 373

Query: 93  TLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             D     I  + +    +        + G GL L  G + ++F    ++ +   Q   R
Sbjct: 374 KADMRFTAIDNFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQNDIQAAAR 432

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G  + V +  L+ +NT++E++      K  + + ++ +
Sbjct: 433 C-----HRIGQTKHVKIIRLVTKNTVEEVIECYATRKLRMTNRVMES 474


>gi|194384680|dbj|BAG59500.1| unnamed protein product [Homo sapiens]
          Length = 1014

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 775 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 834

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    +  + F   WD +   Q   R       + G  +AV VY LI +
Sbjct: 835 LCTRAGGLGINLT-AADTCIIFDSDWDPQNDLQAQARC-----HRIGQSKAVKVYRLITR 888

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           N+ +  +  +   K  +   +L  + ++ 
Sbjct: 889 NSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|310794269|gb|EFQ29730.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1053

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 17/150 (11%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEG 107
            L  +     +   I+   F+S L     RL++A      LD      Q          + 
Sbjct: 890  LHKLRSDNASHKSIIFSQFSSMLQLIEWRLRRAGITTVMLDGSMNPAQRQASINHFMTKT 949

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                      + G  LNL     + +    WW+     Q  +R       + G  R   +
Sbjct: 950  DCECFLVSLKAGGVALNLTEASRVFI-VDPWWNPAAEWQSADRC-----HRIGQTRPCTI 1003

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L  +++++  ++     K+ + +  +NA
Sbjct: 1004 TRLCIEDSVESRMVLIQEKKTNMINSTVNA 1033


>gi|307172263|gb|EFN63768.1| Chromodomain-helicase-DNA-binding protein 7 [Camponotus floridanus]
          Length = 4304

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            Y +     R++    Q             +      +      + G G+NL    + ++ 
Sbjct: 2042 YPYERIDGRIRGNLRQAAIDRYSKPDSDRF------VFLLCTKAGGLGINLT-AADTVII 2094

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+ +   Q   R       + G ++ V VY L+ +NT +  +  +   K  +   +
Sbjct: 2095 YDSDWNPQNDLQAQARC-----HRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAI 2149

Query: 195  LNAL 198
            L ++
Sbjct: 2150 LQSM 2153


>gi|66813908|ref|XP_641133.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60469158|gb|EAL67154.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2373

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGKIP--LL 112
           K     +++     S L  L               G     D    I  +++      + 
Sbjct: 846 KLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRFVF 905

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ F   W+ +   Q   R       + G  + V VY L+ 
Sbjct: 906 LLCTRAGGIGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQDKMVKVYRLVT 959

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +NT + L+  +   K  +   +L  +
Sbjct: 960 KNTYERLMFDKASKKLGLDRAVLTKM 985


>gi|158288154|ref|XP_310015.4| AGAP009344-PA [Anopheles gambiae str. PEST]
 gi|157019247|gb|EAA05751.4| AGAP009344-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 45/185 (24%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--------- 99
               K+  L  I++  N     +++   F S L  ++    +    +++P          
Sbjct: 676 FPSNKLWILFEILKHCNERGEKVLIFTAFVSVLNMVEHFMAKIHHQEENPQLSDAYAYSA 735

Query: 100 -------------------------TIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNI 131
                                     I  +N+    +         + G G+NL  G N 
Sbjct: 736 FKGPWEPGKDYYRLDGKTQKSIRHQMITSFNDPQNKRTKCFLISAKAGGQGINLT-GANR 794

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++     W+    QQ I RI      + G KR  +VY LIA  T++E V  R  TK  + 
Sbjct: 795 VIILDTSWNPSNDQQNIFRIF-----RLGQKRKCYVYRLIAAGTMEEKVYSRSVTKQALS 849

Query: 192 DLLLN 196
             +++
Sbjct: 850 FRVVD 854


>gi|47227437|emb|CAG04585.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2248

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 36/181 (19%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E         K+  L+ ++ K       ++V       L  L+          +    G 
Sbjct: 967  EGSALTKASGKLMLLQKMLRKLKEQGHRVLVFSQMTKMLDLLEDFLDHEGYKYERIDGGI 1026

Query: 93   TLDKDPCTIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI-- 148
            T       I  +N  G           + G G+NL    + ++ F   W+     Q+   
Sbjct: 1027 TGALRQEAIDRFNAPGACQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDIQVAVG 1085

Query: 149  ------ERIGVT-------------RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                   R G               R  + G    V +Y  + + +++E + Q  + K  
Sbjct: 1086 SAGRGAARCGADLNRRPSLPAQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMM 1145

Query: 190  I 190
            +
Sbjct: 1146 L 1146


>gi|198458067|ref|XP_002138492.1| GA24365 [Drosophila pseudoobscura pseudoobscura]
 gi|198136210|gb|EDY69050.1| GA24365 [Drosophila pseudoobscura pseudoobscura]
          Length = 1651

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N   ++ L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 990  ERERLVNEFNANSQVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1045

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  +VY ++    +++ +  R   K  + D +++
Sbjct: 1046 --YRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 1085


>gi|195151315|ref|XP_002016593.1| GL10420 [Drosophila persimilis]
 gi|194110440|gb|EDW32483.1| GL10420 [Drosophila persimilis]
          Length = 1641

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N   ++ L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 990  ERERLVNEFNANSQVKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1045

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  +VY ++    +++ +  R   K  + D +++
Sbjct: 1046 --YRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 1085


>gi|73985397|ref|XP_860617.1| PREDICTED: similar to KIAA0809 protein isoform 2 [Canis familiaris]
          Length = 1056

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 37/178 (20%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         D   +Q+W  
Sbjct: 310 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVR 369

Query: 105 N----EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           N     G  P                    L      +   G+NL  G N +V F   W+
Sbjct: 370 NVSYFHGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWN 428

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 429 PCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 481


>gi|324502582|gb|ADY41136.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 1035

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           E         K+  LE I+   + +   +++       L  +Q  F   R          
Sbjct: 314 EGEHLATSSGKMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKL 373

Query: 93  TLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             D     I  + +    +        + G GL L  G + ++F    ++ +   Q   R
Sbjct: 374 KADMRFTAIDNFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQNDIQAAAR 432

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G  + V +  L+ +NT++E++      K  + + ++ +
Sbjct: 433 C-----HRIGQTKHVKIIRLVTKNTVEEVIECYATRKLRMTNRVMES 474


>gi|198453636|ref|XP_001359276.2| GA18064 [Drosophila pseudoobscura pseudoobscura]
 gi|198132447|gb|EAL28421.2| GA18064 [Drosophila pseudoobscura pseudoobscura]
          Length = 1958

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 71/187 (37%), Gaps = 34/187 (18%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVII---------EKANAAPIIVAYHFNSDLARL 84
            QLA      D+ +H       K+ AL+ ++         E  +    ++     + L  +
Sbjct: 1710 QLALSNSCLDDIEH-----SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIV 1764

Query: 85   QK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
            +                       +    +  +N +  I +L       G GLNL  G +
Sbjct: 1765 EHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GAD 1823

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++F    W+  +  Q ++R       + G K+ V VY LI +N+++E ++   + K   
Sbjct: 1824 TVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILT 1878

Query: 191  QDLLLNA 197
             + +++A
Sbjct: 1879 ANTVVSA 1885


>gi|149030549|gb|EDL85586.1| chromodomain helicase DNA binding protein 1-like (predicted)
           [Rattus norvegicus]
          Length = 530

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 78  NSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              L  LQ              G    ++    I+ + +  I +      + G G+NL  
Sbjct: 2   THMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQPIFVFLLSTRAGGVGMNLT- 60

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++F    ++ +   Q   R       + G  ++V V  LI ++T++E+V ++  +K
Sbjct: 61  AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK 115

Query: 188 STIQDLLLNA 197
             + ++++  
Sbjct: 116 LQLTNMVIEG 125


>gi|45357056|gb|AAS58484.1| SNF2P [Triticum monococcum]
          Length = 882

 Score = 80.4 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFP 89
           Y+E +H  +    K+  L++++EK +     +++       L  LQ          +   
Sbjct: 354 YEEGEHLVQ-ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLD 412

Query: 90  QGRTLDKDPCTIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                ++    I+ +             N     +      + G GLNL  G + ++F+ 
Sbjct: 413 GSVRAEERFAAIRNFSSQPTKGVVRDDSNPSGAFVFMISTRAGGVGLNL-IGADTVIFYE 471

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  + 
Sbjct: 472 QDWNPQADKQALQR-----THRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLS 521


>gi|145515018|ref|XP_001443414.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410792|emb|CAK76017.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1024

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGA----VYYDEEKHWKEV--HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N      +  D  +   E+    
Sbjct: 615 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRVTDEIWRSS 674

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-I 101
            K + L+ II K       +++       +  ++  F           G T  +D  + I
Sbjct: 675 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAFFEYRGWRYLRLDGSTKSEDRESRI 734

Query: 102 QEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           Q +N+      +      + G GLNLQ   + +V F   W+     Q        R  + 
Sbjct: 735 QLFNQENSIYNIFLLSTRAGGLGLNLQ-SADTVVLFDSDWNPMMDLQA-----QDRAYRI 788

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 789 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAVIIQA 826


>gi|325120874|emb|CBZ56429.1| putative SNF2 family N-terminal domain-containing protein [Neospora
           caninum Liverpool]
          Length = 791

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 18/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCTIQEWNEGKIPLL 112
           L  + +      +IV  H  + L  +++   Q       R   + P   +     +  + 
Sbjct: 499 LSYLFKSGGDMKVIVFAHHRAVLDYIEEYLQQTEKKQSVRIDGRTPQDKR-----ERLVA 553

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLI 171
                +CGHGLNL   G  ++F  L+W   +  Q  +R       + G +  ++ ++YLI
Sbjct: 554 LLSITACGHGLNLTAAG-TVIFAELYWVPGQMIQAEDR-----SHRIGTEFSSIQIHYLI 607

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           A+ T+DE V + L+ K  +    L+  +++
Sbjct: 608 AEGTLDETVFRILQRKWRLMTCTLDGEQQQ 637


>gi|290980924|ref|XP_002673181.1| predicted protein [Naegleria gruberi]
 gi|284086763|gb|EFC40437.1| predicted protein [Naegleria gruberi]
          Length = 1101

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 29/211 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY----YDEEKHWKEV--HDE 54
           ++ Y +F +    D+     E+ +  +      Q+            + K+ KE+     
Sbjct: 519 LELYREFLKS--EDVHEVIHESTSPLAAITILKQICCHPDLLPKVQKKSKNIKEMIAMSG 576

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT--I 101
           K+  L  ++++        ++    +  L  +               G   D       +
Sbjct: 577 KMIFLRKLVQQLYEEDEKCLIFSQSSKMLDMIASMLKYINISYTRIDGTINDTKERQRRV 636

Query: 102 QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N    P         +   GL L      ++ F   W+  +  Q  +R       + 
Sbjct: 637 DSFNSENSPYFCFLLTSQTGSVGLTLT-AATRVILFDPSWNPTQDNQAADRC-----YRI 690

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           G  + V VY LI+ +TI+E V ++   K  I
Sbjct: 691 GQLKDVVVYRLISCSTIEEKVYRKQVFKDAI 721


>gi|229828149|ref|ZP_04454218.1| hypothetical protein GCWU000342_00206 [Shuttleworthia satelles DSM
           14600]
 gi|229792743|gb|EEP28857.1| hypothetical protein GCWU000342_00206 [Shuttleworthia satelles DSM
           14600]
          Length = 758

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLD 95
           +  +     K   L  I   A      ++V   F   L+++QK                +
Sbjct: 549 QTRQADQSAKGIRLLEICRAAAEEGRKVLVFSFFLDTLSKVQKLLGDQCLPLITGSVNAE 608

Query: 96  KDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + + +   +L     + G GLN+Q   ++++F          +Q I R    
Sbjct: 609 TRQNIIDRFRDARPGSVLACQIQAGGTGLNIQ-AASVIIFCEPQIKPSLQEQAIGR---- 663

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + G  R V V +L+ + T+DE +   L  K  I +
Sbjct: 664 -AYRMGQVRNVLVRHLLCEGTVDERIRDLLERKRDIFE 700


>gi|168029897|ref|XP_001767461.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681357|gb|EDQ67785.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1569

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 37  NGAVYYDEEKHWK--EVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAF---- 88
            G    ++    +   +   K+  L+ ++ +       +++       L  L        
Sbjct: 693 GGDANMNDNNKVQRIVLSSGKLAILDKLLIRLKETNHRVLIFSQMVKMLDILADYMSLRG 752

Query: 89  -----PQGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  G T  D     ++ +N    +         + G G+NL    + ++ F   W+
Sbjct: 753 FQFQRLDGSTRSDLRHQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWN 811

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   Q + R       + G +  V +Y  +   +++E +L+R + K  + + +L+
Sbjct: 812 PQNDLQAMSR-----AHRIGQRDVVNIYRFVISRSVEEDILERAKKK--MANRVLD 860


>gi|148910874|gb|ABR18490.1| SNF2P [Triticum turgidum]
          Length = 878

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFP 89
           Y+E +H  +    K+  L++++EK +     +++       L  LQ          +   
Sbjct: 354 YEEGEHLVQ-ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLD 412

Query: 90  QGRTLDKDPCTIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                ++    I+ +             N     +      + G GLNL  G + ++F+ 
Sbjct: 413 GSVRAEERFAAIRNFSSQPTKGVVRDDSNPSGAFVFMISTRAGGVGLNL-IGADTVIFYE 471

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  + 
Sbjct: 472 QDWNPQADKQALQR-----THRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLS 521


>gi|255078968|ref|XP_002503064.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518330|gb|ACO64322.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1866

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 26/180 (14%)

Query: 44   EEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
            EE       + K++AL      + ++  +   ++   FNS L+ LQ+  P+         
Sbjct: 1647 EEVRVVLNSESKLQALVTELRKMRDEDGSNKALIFSQFNSTLSWLQERLPEEGFGFRTIS 1706

Query: 93   ---TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L +    IQ +  +    +      S   G+NL    + +      ++    +Q I
Sbjct: 1707 GSMPLKQRDQAIQAFQKDPPTTVFLLSMRSGAVGINLTSATH-VFLVEPAFNPALTEQAI 1765

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-----QDLLLNALKKETI 203
             R       + G +R V V +LI  N+I+  + + L  +           ++ A K+  +
Sbjct: 1766 GRSW-----RMGQRREVRVKHLIVANSIESNIRKLLAAREETKPEDEAADVIEAEKQRGM 1820


>gi|222637530|gb|EEE67662.1| hypothetical protein OsJ_25277 [Oryza sativa Japonica Group]
          Length = 716

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQ 102
             +  L  IIE       ++  H  S L  + +   + +              +      
Sbjct: 525 AVLDYLGTIIEA--ECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTD 582

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I        + G GL L    + ++F  L W   +  Q  +R       + G  
Sbjct: 583 FQNKDDIKAAVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDR-----AHRIGQV 636

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 637 SSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 674


>gi|307136401|gb|ADN34210.1| chromatin remodeling complex subunit [Cucumis melo subsp. melo]
          Length = 2374

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +      ++   
Sbjct: 1117 ASAKLTLLHSMLKILHKEGHRVLLFSQMTKLLDILEDYLTIEFGPKTYERVDGSVSVADR 1176

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1177 QAAITRFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1230

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1231 HRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1270


>gi|301767248|ref|XP_002919008.1| PREDICTED: helicase ARIP4-like [Ailuropoda melanoleuca]
          Length = 1465

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         D   +Q+W  
Sbjct: 717 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVR 776

Query: 105 N------EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           N      +G  P                    L      +   G+NL  G N +V F   
Sbjct: 777 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 835

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 836 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 890


>gi|281338061|gb|EFB13645.1| hypothetical protein PANDA_007611 [Ailuropoda melanoleuca]
          Length = 1424

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         D   +Q+W  
Sbjct: 676 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVR 735

Query: 105 N------EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           N      +G  P                    L      +   G+NL  G N +V F   
Sbjct: 736 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 794

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 795 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 849


>gi|145341798|ref|XP_001415990.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576213|gb|ABO94282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 663

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 27/210 (12%)

Query: 13  CDLQGENIEAFNSASKTVKCLQL------ANGAVYYDEEKHWKEVHDE-KIKALEVIIE- 64
           CD +       N   +  KC Q          A+  +       V    K++ L+ ++  
Sbjct: 457 CDSRESFANFANIMMEVRKCCQHPFLLDGVEAAIAPEGASTTALVSSAGKLQLLDKLLPH 516

Query: 65  -KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW--NEGKIPL 111
            +      ++       L  L+                 T       I ++   +    L
Sbjct: 517 LREGGHRALIFSQMTRVLDVLEDYCRARGHSYVRLDGSITGKARQEAIDKYCAEDSDTFL 576

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    + +V F   W+ +   Q + R       + G  R V VY L+
Sbjct: 577 FLLSTRAGGQGINLVQ-ADTVVMFDSDWNPQNDAQALAR-----AHRIGQTRQVQVYRLV 630

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + T ++ +  R   K  ++  +  + +KE
Sbjct: 631 MRATYEKEMFTRASMKLGLEQAIFGSAEKE 660


>gi|121713498|ref|XP_001274360.1| DNA repair helicase rad5,16 [Aspergillus clavatus NRRL 1]
 gi|119402513|gb|EAW12934.1| DNA repair helicase rad5,16 [Aspergillus clavatus NRRL 1]
          Length = 1174

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 78/195 (40%), Gaps = 31/195 (15%)

Query: 33   LQLANGAVYYDEEKHWK-----EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLAR 83
            L+  + +   D++  W      E+   K+  +  +I    E+     +++    + D  R
Sbjct: 954  LRFNSSSFDKDQDTDWISACGGEMPSAKLTKIRELIQNWIEENPEVKVVIF-TLSLDFVR 1012

Query: 84   L-----------QKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNI 131
            +             AF     +     +++E+    +  +L A   + G GL++    N 
Sbjct: 1013 IATMMCEREGWQCYAFTGKMPIPAREQSMKEFRENPEAKVLVASLKAGGIGLDMTM-ANK 1071

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             +   LWW+   H+Q   R+      + G ++ V +  LI ++TIDE + Q    K+   
Sbjct: 1072 CILVDLWWNEAIHEQAFCRL-----YRIGQQKEVEIVILIVRDTIDEYICQLQLKKTAEI 1126

Query: 192  DLLL---NALKKETI 203
            +  +      K++TI
Sbjct: 1127 NSAMGEEELSKRDTI 1141


>gi|73985395|ref|XP_533811.2| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein isoform 1 [Canis familiaris]
          Length = 1467

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         D   +Q+W  
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVR 778

Query: 105 N------EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           N      +G  P                    L      +   G+NL  G N +V F   
Sbjct: 779 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|73985399|ref|XP_860644.1| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein isoform 3 [Canis familiaris]
          Length = 1395

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         D   +Q+W  
Sbjct: 647 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVR 706

Query: 105 N------EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           N      +G  P                    L      +   G+NL  G N +V F   
Sbjct: 707 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 765

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 766 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 820


>gi|302816250|ref|XP_002989804.1| hypothetical protein SELMODRAFT_428350 [Selaginella moellendorffii]
 gi|300142370|gb|EFJ09071.1| hypothetical protein SELMODRAFT_428350 [Selaginella moellendorffii]
          Length = 2150

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  ++         +++       L  L+            +       + + 
Sbjct: 1003 ASAKLTLLHSMLGSLKKEGHRVLIFSQMTKLLDILEDYLTFEFGHDSYERVDGSVPVAER 1062

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ +N+     +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1063 QAAIRRYNKDTSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1116

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G  + + VY L+ + +++E +L   + K  ++ L
Sbjct: 1117 HRIGQSKKLLVYRLLVRGSVEERILHLAKKKLELEQL 1153


>gi|296225327|ref|XP_002758442.1| PREDICTED: helicase ARIP4 [Callithrix jacchus]
          Length = 1467

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-------------- 95
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPSPPGAEGQGAQKWVR 778

Query: 96  --------------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|222637088|gb|EEE67220.1| hypothetical protein OsJ_24338 [Oryza sativa Japonica Group]
          Length = 2258

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +      ++ + 
Sbjct: 986  ASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVAER 1045

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1046 QAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1099

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G    + VY L+ + +++E +L   + K  +  L +N
Sbjct: 1100 HRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVN 1139


>gi|218199663|gb|EEC82090.1| hypothetical protein OsI_26092 [Oryza sativa Indica Group]
          Length = 2275

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
               K+  L  +++  +     +++       L  L+            +      ++ + 
Sbjct: 1003 ASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVAER 1062

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 1063 QAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 1116

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G    + VY L+ + +++E +L   + K  +  L +N
Sbjct: 1117 HRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVN 1156


>gi|121716002|ref|XP_001275610.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119403767|gb|EAW14184.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1179

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 28/172 (16%)

Query: 50   EVHDEKIKAL-EVIIEKANAAPII---------VAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL   ++E A  +  +         V   + S L  ++ A            
Sbjct: 995  EGPHTKTKALLAHLMESAEESKRLGSELPIKSVVFSAWTSHLDLIEIALKDNGITGYTRL 1054

Query: 93   ----TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                TL      +++++   +  +L A   + G GLNL     + +     ++     Q 
Sbjct: 1055 DGSMTLPARNRALEDFHSNNETTILLATIGAGGVGLNLTSASKVYIM-EPQYNPAAVAQA 1113

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I+R+      + G  R V     I + +I+E + +  + K  + D+ +N  K
Sbjct: 1114 IDRV-----HRLGQTRDVTTVQFIMKGSIEEKIFELAKRKQQLADMSMNRGK 1160


>gi|238496787|ref|XP_002379629.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220694509|gb|EED50853.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1117

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALE----VIIEKANA----API--IVAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL       ++++       PI  +V   + S L  ++ A            
Sbjct: 933  EGPHTKTKALIAYLLETMDESKGLTDERPIKSVVFSAWTSHLDLIEIALKDNGITGFTRL 992

Query: 93   ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                TL      +QE+ +   I +L A   + G GLNL     + +     ++     Q 
Sbjct: 993  DGTMTLSARQKALQEFHDNNDITILLATIGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 1051

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1052 VDRV-----HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1104


>gi|145494324|ref|XP_001433156.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400273|emb|CAK65759.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1030

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGA----VYYDEEKHWKEV--HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N      +  D  +   E+    
Sbjct: 618 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRITDEIWRSS 677

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-I 101
            K + L+ II K       +++       +  ++  F           G T  +D  T I
Sbjct: 678 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAYFEYRGWRYLRLDGSTKSEDRETRI 737

Query: 102 QEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +N+      +      + G GLNLQ   + +V F   W+     Q        R  + 
Sbjct: 738 KLFNQENSIYNIFLLSTRAGGLGLNLQ-SADTVVLFDSDWNPMMDLQA-----QDRAYRI 791

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 792 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAIIIQA 829


>gi|215254414|gb|ACJ64199.1| SNF2P [Triticum turgidum]
          Length = 882

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 32/180 (17%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFP 89
           Y+E +H  +    K+  L++++EK +     +++       L  LQ          +   
Sbjct: 354 YEEGEHLVQ-ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLD 412

Query: 90  QGRTLDKDPCTIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                ++    I+ +             N     +      + G GLNL  G + ++F+ 
Sbjct: 413 GSVRAEERFAAIRNFSSQPTKGGVRDDSNPSGAFVFMVSTRAGGVGLNL-IGADTVIFYE 471

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  +   +  
Sbjct: 472 QDWNPQADKQALQR-----THRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFE 526


>gi|67600198|ref|XP_666342.1| SNF2 family N-terminal domain [Cryptosporidium hominis TU502]
 gi|54657319|gb|EAL36112.1| SNF2 family N-terminal domain [Cryptosporidium hominis]
          Length = 2142

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 69   APIIVAYHFNSDLARL---------QKAFPQGRTLDK-DPCTIQEWNEGKIPLL--FAHP 116
              I++   F   L  L         Q     G T        I+E+      +L      
Sbjct: 928  HKILIFTQFQLILDELENYCLWRGWQYMRLDGSTNKLIRELDIREFGLPDNYVLVYLICT 987

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N +V +   W+     Q ++R       + G  R V ++ L+ + ++
Sbjct: 988  RAGGLGINL-VSANHVVMYDEDWNPFVDLQAVDR-----AHRIGQTRDVCIWKLVTEWSV 1041

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETIH 204
            +E ++     K  +  +++    ++  H
Sbjct: 1042 EERMVFGREQKLKLDKMIIKGSARDDNH 1069


>gi|66361648|ref|XP_627347.1| ISWI related chromatinic protein with an apicomplexan specific domain
            architecture composed of 3x PHD+SNF2 ATpase+2xPHD
            [Cryptosporidium parvum Iowa II]
 gi|46228727|gb|EAK89597.1| ISWI related chromatinic protein with an apicomplexan specific domain
            architecture composed of 3x PHD+SNF2 ATpase+2xPHD
            [Cryptosporidium parvum Iowa II]
          Length = 2140

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 69   APIIVAYHFNSDLARL---------QKAFPQGRTLDK-DPCTIQEWNEGKIPLL--FAHP 116
              I++   F   L  L         Q     G T        I+E+      +L      
Sbjct: 928  HKILIFTQFQLILDELENYCLWRGWQYMRLDGSTNKLIRELDIREFGLPDNYVLVYLICT 987

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N +V +   W+     Q ++R       + G  R V ++ L+ + ++
Sbjct: 988  RAGGLGINL-VSANHVVMYDEDWNPFVDLQAVDR-----AHRIGQTRDVCIWKLVTEWSV 1041

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETIH 204
            +E ++     K  +  +++    ++  H
Sbjct: 1042 EERMVFGREQKLKLDKMIIKGSARDDNH 1069


>gi|317146955|ref|XP_001821784.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1117

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALE----VIIEKANA----API--IVAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL       ++++       PI  +V   + S L  ++ A            
Sbjct: 933  EGPHTKTKALIAYLLETMDESKGLTDERPIKSVVFSAWTSHLDLIEIALKDNGITGFTRL 992

Query: 93   ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                TL      +QE+ +   I +L A   + G GLNL     + +     ++     Q 
Sbjct: 993  DGTMTLSARQKALQEFHDNNDITILLATIGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 1051

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1052 VDRV-----HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1104


>gi|317031845|ref|XP_001393539.2| DNA repair protein RAD5 [Aspergillus niger CBS 513.88]
          Length = 1212

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1109 VLLISLRAGGVGLNLTAASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQTRDVQVTRF 1162

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +++I+  +L+    K  I   L
Sbjct: 1163 VVKDSIEGRMLRVQERKMNIAGSL 1186


>gi|224125738|ref|XP_002319663.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222858039|gb|EEE95586.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1404

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 33/180 (18%)

Query: 44   EEKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLA-------RLQKAFPQGRTL 94
            E  + +  +  K+  L  I  +        +V       L        RL +   +G+  
Sbjct: 1012 ENNYKEVDYSGKMVLLLDILVMSSDVGDKTLVFTQSIPTLDLIELYLSRLPRLGKKGKFW 1071

Query: 95   DK---------------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFS 136
             K                   ++ +N+ K   +        +   G+NL Y  N +V   
Sbjct: 1072 RKGKDWYRLDGRTESSERQRLVERFNDPKNKRVKCTLISTRAGSLGINL-YAANRVVIVD 1130

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+     Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++
Sbjct: 1131 GSWNPTYDLQAI-----YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1185


>gi|156840700|ref|XP_001643729.1| hypothetical protein Kpol_1009p17 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114352|gb|EDO15871.1| hypothetical protein Kpol_1009p17 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1515

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI--QE 103
            I  ++ +  K++   I++   F +  + L     +          G    +    +    
Sbjct: 1344 IAVIKEVFSKSSTEKIVIFSQFITFFSILDYFLKKELNIETFQYDGSMNAQQRSDVLSDF 1403

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      +L     +   GL L    ++++    +W+    +Q  +R       +    +
Sbjct: 1404 YKSSSTRVLLISMKAGNSGLTLTCANHVII-VDPFWNPYVEEQAQDRC-----YRISQTK 1457

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V +Y L  +N++++ + +    K  + D  ++  K
Sbjct: 1458 TVQIYRLFIKNSVEDRIKELQDRKKKMVDAAMDPRK 1493


>gi|256086324|ref|XP_002579350.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
 gi|238664781|emb|CAZ35589.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
          Length = 1299

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + Y     + RL       +  D+     +  N+    ++       G GL +    N +
Sbjct: 667 IHYPTQHRILRLDGR--TAKVCDRLSIINKFQNDKSYTVMLLTTQVGGVGLTIT-SANRV 723

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +     W+     Q ++R       + G K  V VY LI   T++E + +R   K ++
Sbjct: 724 IILDPSWNPAVDSQAVDR-----AYRIGQKLDVVVYRLITCATVEEKIYRRQIFKDSV 776


>gi|224136438|ref|XP_002326860.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222835175|gb|EEE73610.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 576

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------AFPQGR---------TLDKD 97
           K K L  +I   +A    ++V   +   L  + K      ++ QG           +D+ 
Sbjct: 367 KTKFLMELIRLCQARNEKVLVFSQYLEPLNLVIKQLESNFSWIQGEDILYMHGKLKIDER 426

Query: 98  PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I+ +N       +L A   +C  G+NL  G + +V   + W+       +ER  ++R
Sbjct: 427 QILIKHFNNANSNAKVLLASTRACSEGINL-VGASRVVLLDVLWNPS-----VERQAISR 480

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + G ++ V++Y+LI   T++E        K  + +L+ +   + + H
Sbjct: 481 AYRLGQEKVVYIYHLITSGTMEEEKYFCQVEKERLSNLVFDCTNRSSNH 529


>gi|294891643|ref|XP_002773666.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239878870|gb|EER05482.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 741

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPCTIQ 102
           K+ AL+ I+   +A    +++       L  L         +     G T  D     I+
Sbjct: 487 KMMALDGILPKLRATGHRVLIFSQMTKLLNILELYLTFRNFRYLRLDGSTGADDRERRIE 546

Query: 103 EWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G G+NLQ   + ++ F   W+ +  +Q       +R  + G
Sbjct: 547 LFNSSNSNYFAFILSTRAGGLGINLQT-ADTVIIFDSDWNPQNDEQA-----QSRAHRLG 600

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            K  V  + LI  N+++E +LQ+   K   QD L+
Sbjct: 601 QKSEVRTFRLITLNSVEEGMLQKAGEKMD-QDALV 634


>gi|168229242|ref|NP_001108200.1| helicase-like transcription factor alpha [Oryctolagus cuniculus]
 gi|60390953|sp|Q95216|HLTF_RABIT RecName: Full=Helicase-like transcription factor; AltName:
           Full=RUSH-1; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3
 gi|1655930|gb|AAC18656.1| RUSH-1alpha [Oryctolagus cuniculus]
          Length = 1005

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           A   +++ + +     KI AL      +  K      +V   F + L+ ++        +
Sbjct: 815 ACDSEKKSNMEWTSSSKINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFV 874

Query: 95  ----------DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      K   +IQ +     G   ++     + G GLNL    + +      W+ 
Sbjct: 875 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-CAASRVFLMDPAWNP 933

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q  +R       + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 934 AAEDQRFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 978


>gi|70998502|ref|XP_753973.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66851609|gb|EAL91935.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1827

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
              + + L+ II ++      ++V  H    L  ++      +           +      
Sbjct: 1390 SYRAQLLDRIISESIKAGDKVLVFSHSIPTLNYVEHVLKISKRSYRRLDGKTPISTRQAA 1449

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             + +N      +      + G GLN+  G N +V F   ++    +Q + R       + 
Sbjct: 1450 TKSFNTVSDEKVYLISTRAGGLGLNI-PGANRVVIFDFSFNPIWEEQAVGR-----AYRL 1503

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ VFVY  IA  T +E++  +   K+ +   +++
Sbjct: 1504 GQQKPVFVYRFIAGGTFEEIIYNKAIFKTQLAVRVVD 1540


>gi|269796315|ref|YP_003315770.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098500|gb|ACZ22936.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 741

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDP 98
             K+  L  I+E A  +   ++V  +F   +  +++   + R              +   
Sbjct: 547 SSKLGRLLEILEDAAESGEKVVVFSYFRDVVDLVRRTVAETRPDAVYGPLWGGVAAEDRQ 606

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++       +L A   + G GLN+Q   N++V            Q + R+     R
Sbjct: 607 AAVDDFTAAPPGAVLVAQVDAGGVGLNIQ-AANVVVICEPQLKPTTEAQAVARV-----R 660

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G  R+V V+ L+ + ++DE + + L  KS + D 
Sbjct: 661 RMGQVRSVRVHRLLVEGSVDERIRELLTAKSRVFDE 696


>gi|196003012|ref|XP_002111373.1| hypothetical protein TRIADDRAFT_55310 [Trichoplax adhaerens]
 gi|190585272|gb|EDV25340.1| hypothetical protein TRIADDRAFT_55310 [Trichoplax adhaerens]
          Length = 849

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAF 88
           L+L  GA   ++       H+ K+       E    + I  ++ F S        L+   
Sbjct: 630 LELELGANTSNDNSDVHGNHETKVTRRTNKTED-EGSSIDYSWAFPSMAHYAPGVLEHGI 688

Query: 89  PQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +    I  +N        L      +   G+NL    N +V +   W+     
Sbjct: 689 DGSVPSHERSRLIDLFNSPDNNSVWLFLISTRAGNLGINL-VAANRVVIYDSAWNPCYDN 747

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q   RI      + G K+  ++Y L+  NT++ ++ +    K  +   +++
Sbjct: 748 QAAFRI-----YRYGQKKPCYIYRLVGSNTMEHVIYKCQIRKQGLSRRIID 793


>gi|118089602|ref|XP_420305.2| PREDICTED: similar to putative DNA dependent ATPase and helicase
            [Gallus gallus]
          Length = 2533

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 26/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIEK 65
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 2045 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2098

Query: 66   ANAAPI----IVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            AN           Y      F + D  RL  +    ++  K      +    +  L    
Sbjct: 2099 ANREKTDKEKPPIYKGEGKWFRNIDYYRLDGST-TAQSRKKWAEEFNDETNVRGRLFIIS 2157

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T
Sbjct: 2158 TKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQSKPVFVYRFLAQGT 2211

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2212 MEDKIYDRQVTKQSLSFRVVD 2232


>gi|325274896|ref|ZP_08140906.1| DNA helicase [Pseudomonas sp. TJI-51]
 gi|324099980|gb|EGB97816.1| DNA helicase [Pseudomonas sp. TJI-51]
          Length = 659

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 35/201 (17%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA- 66
           +R+ Y  L   +     +  K  K  QL               +   K   L   I    
Sbjct: 461 ERDQY--LAAVSDNTQTAIVKIGKIRQL---------------LERLKASWLIDTITSLG 503

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAH 115
           +    I+   +   +A L   F +               +    I  + ++  + +    
Sbjct: 504 DDDKSIIFCEYTESVAYLADEFAKAGIQTVTFTGSNSGTRKQKAIDTFMSDPAVKVFIGT 563

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    N + F SL W         +R    R  + G KRAV V   +   T
Sbjct: 564 TKAAGVGLNL-VAANYVFFASLPW-----TAAAKRQAEDRAYRNGQKRAVTVLMPVISGT 617

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           IDE V+  L+ K +I+  LL+
Sbjct: 618 IDEQVVLLLQHKESIEQDLLD 638


>gi|159126293|gb|EDP51409.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1827

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
              + + L+ II ++      ++V  H    L  ++      +           +      
Sbjct: 1390 SYRAQLLDRIISESIKAGDKVLVFSHSIPTLNYVEHVLKISKRSYRRLDGKTPISTRQAA 1449

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             + +N      +      + G GLN+  G N +V F   ++    +Q + R       + 
Sbjct: 1450 TKSFNTVSDEKVYLISTRAGGLGLNI-PGANRVVIFDFSFNPIWEEQAVGR-----AYRL 1503

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ VFVY  IA  T +E++  +   K+ +   +++
Sbjct: 1504 GQQKPVFVYRFIAGGTFEEIIYNKAIFKTQLAVRVVD 1540


>gi|23193481|gb|AAN14535.1|AF459085_1 SNF2P [Hordeum vulgare]
          Length = 882

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFP 89
           Y+E +H  +    K+  L++++EK +     +++       L  LQ          +   
Sbjct: 354 YEEGEHLVQ-ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLD 412

Query: 90  QGRTLDKDPCTIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                ++    I+ +             N     +      + G GLNL  G + ++F+ 
Sbjct: 413 GSVRAEERFAAIRNFSSQATKGVVRDDNNPSGAFVFMISTRAGGVGLNL-IGADTVIFYE 471

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+ +  +Q ++R       + G    V    L++Q TI+E++++R   K  + 
Sbjct: 472 QDWNPQADKQALQR-----THRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLS 521


>gi|224178882|ref|XP_002187939.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 181

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ + +  I +      + G G+NL    + ++F    ++ +   Q I R       + 
Sbjct: 18  AIKNFGQQPIFIFLLSTRAGGVGMNLT-AADTVIFTDSDFNPQNDLQAIAR-----AHRI 71

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 72  GQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 109


>gi|323705968|ref|ZP_08117539.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534766|gb|EGB24546.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 930

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 79/213 (37%), Gaps = 30/213 (14%)

Query: 7   FQRELYCDLQGE---NIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDE--KIKAL 59
           FQ +LYC L      N +  +      K ++L      +  D +    +  +E  K++ L
Sbjct: 699 FQEKLYCQLIENYKNNEKKESPLGVLQKLMELCAHPRLIQDDGDGDTYKFINESGKLQRL 758

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-E 106
             I+ +        ++  H+      L+K              G         I ++   
Sbjct: 759 IEIMNEIKLKGEKAVIFTHYIKMQTILRKVIMDVFGINCLVINGNIKGDRMSVIDKFRKS 818

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++     + G G+ +    N ++ ++  W+    +Q  +R+      + G  R V 
Sbjct: 819 PGFNIIILSTRAAGVGITITEANN-VIHYTRDWNPAVEKQATDRV-----YRIGQTREVN 872

Query: 167 VYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           +YY I  +    T++E + + L+ K  + + ++
Sbjct: 873 IYYPICTSSRGKTVEERLNEVLQKKIQLLNEVI 905


>gi|147817208|emb|CAN70867.1| hypothetical protein VITISV_027610 [Vitis vinifera]
          Length = 1177

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 13/119 (10%)

Query: 90   QGRTLDKDPC-TIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             GRT   +    ++ +N+    ++        +   G+NL +  N ++     W+     
Sbjct: 983  DGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINL-HSANRVIIVDGSWNPTYDL 1041

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            Q I      R  + G  + VF Y L+A  T++E + +R  TK  +   +++   ++ +H
Sbjct: 1042 QAI-----YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD---RQQVH 1092


>gi|297734575|emb|CBI16626.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----TLD 95
           Y+E +H  +    K+  L+ +++K   +   +++       L  LQ      +     LD
Sbjct: 353 YEEGEHLVQ-ASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLD 411

Query: 96  KDPCTIQEW---------------NEGKIP----LLFAHPASCGHGLNLQYGGNILVFFS 136
                 + +               N   +     +      + G GLNL    + ++F+ 
Sbjct: 412 GSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNL-VAADTVIFYE 470

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ +  +Q ++R       + G    V    L+   T++E++++R   K  +   ++ 
Sbjct: 471 QDWNPQVDKQALQR-----AHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVG 525

Query: 197 AL 198
            +
Sbjct: 526 EV 527


>gi|193785791|dbj|BAG51226.1| unnamed protein product [Homo sapiens]
          Length = 793

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 45  NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 104

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I  +N+       L      +   G+NL  G N +V F   
Sbjct: 105 NISYFRLDGSTPAFERERLINRFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 163

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 164 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 218


>gi|323455069|gb|EGB10938.1| hypothetical protein AURANDRAFT_21920 [Aureococcus anophagefferens]
          Length = 157

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 65  KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNE---GKIPL 111
           KA    ++V       L  L           +              I  +N     +  L
Sbjct: 6   KARGHRVLVFSQMTKMLDVLGEYCALRQFAYERLDGDTAARDRARRIDRFNAAAADRAFL 65

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    N +V +   W+     Q + R       + G    V VY L+
Sbjct: 66  FLLSTRAGGLGVNL-ATANTVVIYDADWNPHNDLQALAR-----AHRLGQTDRVLVYRLV 119

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            + T++E +L+  + K  ++ +++ 
Sbjct: 120 CRATVEERILEVAKRKLLLEHVVVE 144


>gi|225453462|ref|XP_002274161.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 983

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----TLD 95
           Y+E +H  +    K+  L+ +++K   +   +++       L  LQ      +     LD
Sbjct: 461 YEEGEHLVQ-ASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLD 519

Query: 96  KDPCTIQEW---------------NEGKIP----LLFAHPASCGHGLNLQYGGNILVFFS 136
                 + +               N   +     +      + G GLNL    + ++F+ 
Sbjct: 520 GSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNL-VAADTVIFYE 578

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ +  +Q ++R       + G    V    L+   T++E++++R   K  +   ++ 
Sbjct: 579 QDWNPQVDKQALQR-----AHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVG 633

Query: 197 AL 198
            +
Sbjct: 634 EV 635


>gi|156097905|ref|XP_001614985.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803859|gb|EDL45258.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1102

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T+++     +      + +      + G GLNL    N ++     W+        +R  
Sbjct: 985  TIERQKIIKRFSKNDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQA 1038

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              R  + G K  V++Y L  +NTI+E +L+  + K  +   
Sbjct: 1039 EDRVHRLGQKNEVYIYRLCCKNTIEETILRCCKAKLHLDQA 1079


>gi|242018945|ref|XP_002429929.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514975|gb|EEB17191.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1234

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 36/175 (20%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW----- 104
               K+  L  I++  +     ++V   + + L  ++         +        W     
Sbjct: 920  ASGKLVLLFQILKICHQAGDKLLVFSQYLTTLNLIEYFLRFVNDNNNKNDECNTWVTGVD 979

Query: 105  -----------------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                                   N  ++ LL     + G G+NL    N ++ F + W+ 
Sbjct: 980  YYRIDGTTNSQSRFDYCKKFNDKNNKRLRLLLISTRAGGLGINL-VSANRVIIFDVSWNP 1038

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q I R+      + G ++  ++Y  +++ T++E + QR  TK ++   +++
Sbjct: 1039 SHDLQSIFRV-----YRFGQRKTCYIYRFLSEATMEEKIYQRQVTKLSLAHRIID 1088


>gi|302509082|ref|XP_003016501.1| hypothetical protein ARB_04790 [Arthroderma benhamiae CBS 112371]
 gi|291180071|gb|EFE35856.1| hypothetical protein ARB_04790 [Arthroderma benhamiae CBS 112371]
          Length = 1187

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   + +   PI  ++   + S L  ++ A  +       
Sbjct: 1002 LYEGPHTKTKALISHLLDTAEDNKKSSCQPPIKSVIFSAWTSHLDLIEIALEENGLTGYT 1061

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +   +I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1062 RLDGTMSLKQRNASIETFSTDDNVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPAAIA 1120

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R+      + G  R V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1121 QAVDRV-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1166


>gi|42562605|ref|NP_175265.3| CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|332194152|gb|AEE32273.1| chromatin remodeling factor18 [Arabidopsis thaliana]
          Length = 673

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
           +Y D            +  LE +IE       +V  H  S L  L +   + +       
Sbjct: 461 IYTDS---AVAKIPAVLDYLENVIEA--GCKFLVFAHHQSMLEELHQFLKKKKVGCIRID 515

Query: 94  ----LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      + ++ +  +I        + G G+ L    + ++F  L W   +  Q  
Sbjct: 516 GSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLT-AASTVIFAELSWTPGDLIQAE 574

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G   +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 575 DR-----AHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 618


>gi|317149017|ref|XP_001823066.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1364

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEG- 107
             II+++      I+V  H    L  +         + +   GRT         + +N G 
Sbjct: 959  SIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNLGS 1018

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLN+    N ++ F   +     +Q + R       + G ++ VFV
Sbjct: 1019 EKQVYLISTRAGGLGLNIPV-ANRVIIFDFKFSPVWEEQAVGR-----AYRLGQQKPVFV 1072

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y  IA  T +E++  +   K+ +   +++
Sbjct: 1073 YRFIAGGTFEEVMYNKAVFKTQLAFRVVD 1101


>gi|148702943|gb|EDL34890.1| mCG123397, isoform CRA_a [Mus musculus]
          Length = 184

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 19/163 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++        +           K   +IQ
Sbjct: 11  NALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 70

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 71  RFQNTEAGSPTIMLLSLKAGGVGLNL-CAASRVFLMDPAWNPAAEDQCFDRC-----HRL 124

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G K+ V +   I +++++E +L+   TK  +        K + 
Sbjct: 125 GQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTDA 167


>gi|284925122|ref|NP_001165424.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Xenopus laevis]
 gi|59805006|gb|AAX08100.1| Brg1 [Xenopus laevis]
          Length = 1600

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 24/177 (13%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR 92
               G V   +          K + L+ I+   +A    +++     + +  ++  F    
Sbjct: 1050 FTGGIVQGQD----VYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRG 1105

Query: 93   TL----------DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        D     ++ +NE   +  +      + G GLNLQ   + +V F   W+
Sbjct: 1106 FKYLRLDGTTKADDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVVIFDSDWN 1164

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  Q        R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1165 PHQDLQA-----QDRAHRIGPQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1216


>gi|218200089|gb|EEC82516.1| hypothetical protein OsI_27014 [Oryza sativa Indica Group]
          Length = 700

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQ 102
             +  L  IIE       ++  H  S L  + +   + +              +      
Sbjct: 509 AVLDYLGTIIEA--ECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTD 566

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I        + G GL L    + ++F  L W   +  Q  +R       + G  
Sbjct: 567 FQNKDDIKAAVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDR-----AHRIGQV 620

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 621 SSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 658


>gi|157310977|ref|YP_001468973.1| putative helicase [Corynebacterium phage P1201]
 gi|95832125|gb|ABF57525.1| putative helicase [Corynebacterium phage P1201]
          Length = 656

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 36/228 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEV-------H 52
           K Y + Q +    L   ++ A    +   +  Q A   G +   E+    EV        
Sbjct: 422 KAYAEMQEDAIAYLDSGSVVANGQLAVMTRLKQFAGCYGTIETKEDADGFEVDAFKPALP 481

Query: 53  DEKIKALEVIIEKA----------NAAPIIVAYHFNSDLARLQKAFPQGRTL-------- 94
             K   L   + +            A  ++VA  F S +   Q A  +            
Sbjct: 482 SNKFTWLLEFLSELGIDKEGDSGPQARKVVVASQFTSVINIFQAALEKRGIKTLKVAGGV 541

Query: 95  --DKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +     + +     P +   +  + G  L L    +I++     +  ++ +Q+ +R+
Sbjct: 542 SAGERKRAAELFQTDHGPQVFLLNTNAGGVALTLDRADDIVIL-DETFIPDDQEQVEDRV 600

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 +      V ++YL ++ TI+E + +    +  IQ  +L+  +
Sbjct: 601 -----HRVSRNHNVTIHYLRSKGTIEESIARTTFGRDQIQKQVLDGER 643


>gi|119498439|ref|XP_001265977.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119414141|gb|EAW24080.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1777

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
              + + L+ II ++      ++V  H    L  ++      +           +      
Sbjct: 1389 SYRAQLLDRIISESIKAGDKVLVFSHSIPTLDYVEHVLKISKRSYRRLDGKTPISTRQAA 1448

Query: 101  IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             + +N   +  +      + G GLN+  G N +V F   ++    +Q + R       + 
Sbjct: 1449 TKSFNTVSEEKVYLISTRAGGLGLNI-PGANRVVIFDFSFNPIWEEQAVGR-----AYRL 1502

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ VFVY  IA  T +E++  +   K+ +   +++
Sbjct: 1503 GQQKPVFVYRFIAGGTFEEIIYNKAIFKTQLAVRVVD 1539


>gi|149245206|ref|XP_001527137.1| hypothetical protein LELG_01966 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449531|gb|EDK43787.1| hypothetical protein LELG_01966 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 357

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTI-QEW-NEGKIPLLF 113
               ++       L  ++    +            G T  +   +I +++  +  I +L 
Sbjct: 124 EHRALIFCQLKDMLDIVENDLLKKYLPSVTYMRLDGSTDPRHRQSIVRKFDEDPSIDVLL 183

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G    L  G + ++F    W+     Q ++R       + G K+ V VY LI +
Sbjct: 184 LTTKVGGLAEYLT-GADTVIFVEHDWNPMNDLQAMDR-----AHRLGQKKVVNVYRLITK 237

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +T++E ++   + K  I   ++N
Sbjct: 238 DTLEEKIMGLQKFKMNIASTIVN 260


>gi|193084056|gb|ACF09729.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           KM3-86-C1]
          Length = 569

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 12/149 (8%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDL--ARLQK----AFPQGRTLDKDPCTIQEWNEG 107
             I  ++ I+E   +  +   + +   L    LQ+    A   G++       I  +  G
Sbjct: 401 HVIDFVKNIMEIEESVVVFCHHKYIHKLLHESLQEFNPAAIIGGQSDKVRQENIDNFQNG 460

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              L+     +   G+NL      ++F  L W    H+Q  +R+      + G K  VF 
Sbjct: 461 GTKLIIVGLRAGNLGINLTR-AKYVIFAELDWSPAIHRQAEDRL-----HRIGQKNTVFA 514

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           YYLI + T+DE V   L  KS   D +++
Sbjct: 515 YYLIGKRTLDEHVANILVDKSYEIDAIMD 543


>gi|145513841|ref|XP_001442831.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410192|emb|CAK75434.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1024

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGA----VYYDEEKHWKEV--HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N      +  D  +   E+    
Sbjct: 615 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRVTDEIWRSS 674

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-I 101
            K + L+ II K       +++       +  ++  F           G T  +D  + I
Sbjct: 675 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAFFEYRGWRYLRLDGSTKSEDRESRI 734

Query: 102 QEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           Q +N+      +      + G GLNLQ   + +V F   W+     Q        R  + 
Sbjct: 735 QLFNQENSIYNIFLLSTRAGGLGLNLQ-SADTVVLFDSDWNPMMDLQA-----QDRAYRI 788

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 789 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAVIIQA 826


>gi|18606158|gb|AAH22975.1| Smarca2 protein [Mus musculus]
          Length = 495

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 86  KAFPQGRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G T  +D   + +++NE   +  +      + G GLNLQ   + +V F   W+  
Sbjct: 16  YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQ-AADTVVIFDSDWNPH 74

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  Q        R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 75  QDLQA-----QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 124


>gi|255715185|ref|XP_002553874.1| KLTH0E09174p [Lachancea thermotolerans]
 gi|238935256|emb|CAR23437.1| KLTH0E09174p [Lachancea thermotolerans]
          Length = 1148

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 29/191 (15%)

Query: 26   ASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
            A  + K L L N +     V+Y+      ++    +K+L+ + + ++   ++V   F+S 
Sbjct: 945  AIDSKKLLTLENDSNKIKIVHYNGGSKSSKITS-LVKSLKRLQDVSSGEQVVVFSQFSSF 1003

Query: 81   LARLQK--------------AFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGL 123
            L  +Q+               F    ++ +    + ++   +  K+ +L     + G GL
Sbjct: 1004 LDIMQRELSASFSSSVAQIYKFDGRLSMKERSRVLHDFATKDLSKLKILLLSLKAGGVGL 1063

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    +       WW      Q I+RI      + G    V V   I +++I+E +L+ 
Sbjct: 1064 NLTC-ASRAYMMDPWWSPSLEDQAIDRI-----HRIGQVNDVKVVRFIMEHSIEEKMLRI 1117

Query: 184  LRTKSTIQDLL 194
               K T+ + +
Sbjct: 1118 QERKRTLGEAV 1128


>gi|47212607|emb|CAF93283.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 905

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           + F    + G GLN   G N++V F   W+     Q I+R       + G  R V V  L
Sbjct: 154 IFFYIIRAGGLGLNF-VGANVVVLFDPTWNPASDLQAIDR-----AYRIGQIRNVTVLRL 207

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I+  T++E++  R   K  +Q  +L
Sbjct: 208 ISLGTVEEVIYLRQVYKQQLQCSVL 232


>gi|326478744|gb|EGE02754.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1188

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   + +   PI  ++   + S L  ++ A  +       
Sbjct: 1003 LYEGPHTKTKALISHLLDTAEDNKKSSCQPPIKSVIFSAWTSHLDLIEIALEENGLTGYT 1062

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +   +I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1063 RLDGTMSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPAAIA 1121

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R+      + G  R V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1122 QAVDRV-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1167


>gi|326469727|gb|EGD93736.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1188

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   + +   PI  ++   + S L  ++ A  +       
Sbjct: 1003 LYEGPHTKTKALISHLLDTAEDNKKSSCQPPIKSVIFSAWTSHLDLIEIALEENGLTGYT 1062

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +   +I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1063 RLDGTMSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPAAIA 1121

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R+      + G  R V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1122 QAVDRV-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1167


>gi|302653441|ref|XP_003018547.1| hypothetical protein TRV_07448 [Trichophyton verrucosum HKI 0517]
 gi|291182199|gb|EFE37902.1| hypothetical protein TRV_07448 [Trichophyton verrucosum HKI 0517]
          Length = 1186

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRT---- 93
            +Y       K +    +   E   + +   PI  ++   + S L  ++ A  +       
Sbjct: 1001 LYEGPHTKTKALISHLLDTAEDNKKSSCQPPIKSVIFSAWTSHLDLIEIALEENGLTGYA 1060

Query: 94   -------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   L +   +I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1061 RLDGTMSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLT-AGSMVYIMEPQYNPAAIA 1119

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q ++R+      + G  R V     I  ++I+E + +  + K  + D+ LN
Sbjct: 1120 QAVDRV-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLN 1165


>gi|241560242|ref|XP_002400839.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
 gi|215499788|gb|EEC09282.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
          Length = 614

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ ++  +      +++   F   L  L+              G T   D   
Sbjct: 441 DSGKFRELDSVLSDSLKKNHRVLIFSQFTMVLDILEAYLNIRGHKWLRLDGATSVTDRQD 500

Query: 101 IQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + +   G   +        + G G+NL    N++V   + ++    +Q  +R       +
Sbjct: 501 LIDKYNGDSSILAFLLSTRAGGQGINL-ASANVVVLHDVDFNPYNDKQAEDRC-----HR 554

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  R VFV   ++++TI+E +L   + K  ++  +  
Sbjct: 555 LGQSRDVFVIKFVSKDTIEEGILAIAKEKLKLEKDITE 592


>gi|327284355|ref|XP_003226904.1| PREDICTED: transcriptional regulator ATRX-like [Anolis carolinensis]
          Length = 2334

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 29/202 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   +   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1843 KDFVTEADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 1896

Query: 65   ----KANAAPIIVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                K    PI+  Y      F + D  RL  +    ++  K      +    +  L   
Sbjct: 1897 ASRDKEEGKPIV--YKGEGKWFRNIDYYRLDGST-TAQSRKKWAEEFNDVTNVRGRLFII 1953

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  +AVFVY  +AQ 
Sbjct: 1954 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKAVFVYRFLAQG 2007

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2008 TMEDKIYDRQVTKQSLSFRVVD 2029


>gi|297671222|ref|XP_002813740.1| PREDICTED: helicase ARIP4-like isoform 2 [Pongo abelii]
          Length = 1161

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 413 NSPKMVLLFHLIEESVNLGDKILVFSQSLSTLALIEEFLGKREVPCPPGAEGQGAQKWVR 472

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 473 NITYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 531

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 532 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 586


>gi|297671220|ref|XP_002813739.1| PREDICTED: helicase ARIP4-like isoform 1 [Pongo abelii]
          Length = 1410

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 662 NSPKMVLLFHLIEESVNLGDKILVFSQSLSTLALIEEFLGKREVPCPPGAEGQGAQKWVR 721

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 722 NITYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 780

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 781 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 835


>gi|194389260|dbj|BAG65618.1| unnamed protein product [Homo sapiens]
          Length = 1161

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 413 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 472

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 473 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 531

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 532 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 586


>gi|168823443|ref|NP_055921.2| helicase ARIP4 [Homo sapiens]
 gi|296439458|sp|Q9Y4B4|ARIP4_HUMAN RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2
          Length = 1467

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 778

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|119585552|gb|EAW65148.1| hCG1997495, isoform CRA_d [Homo sapiens]
          Length = 1415

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 667 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 726

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 727 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 785

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 786 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 840


>gi|114587116|ref|XP_001169759.1| PREDICTED: RAD54-like 2 isoform 1 [Pan troglodytes]
 gi|114587118|ref|XP_001169781.1| PREDICTED: RAD54-like 2 isoform 2 [Pan troglodytes]
          Length = 1467

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGAEGQGAQKWVR 778

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|109039362|ref|XP_001096767.1| PREDICTED: helicase ARIP4 [Macaca mulatta]
          Length = 1467

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGAEGQGAQKWVR 778

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|18999468|gb|AAH24298.1| RAD54-like 2 (S. cerevisiae) [Homo sapiens]
 gi|123982750|gb|ABM83116.1| RAD54-like 2 (S. cerevisiae) [synthetic construct]
 gi|123997421|gb|ABM86312.1| RAD54-like 2 (S. cerevisiae) [synthetic construct]
          Length = 1359

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 611 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 670

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 671 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 729

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 730 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 784


>gi|20521664|dbj|BAA34529.2| KIAA0809 protein [Homo sapiens]
          Length = 1385

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 637 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVR 696

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 697 NISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 755

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 756 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 810


>gi|39971679|ref|XP_367230.1| hypothetical protein MGG_07155 [Magnaporthe oryzae 70-15]
 gi|145019630|gb|EDK03858.1| hypothetical protein MGG_07155 [Magnaporthe oryzae 70-15]
          Length = 1096

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALE--VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----- 93
            Y       + + ++ + A     ++        +V   + S L  ++ A  +        
Sbjct: 906  YTGPHTKTRALVEDLLSAKAHSELMPDEPPIKSVVFSGWTSHLDLIEIALDKAGITHTRL 965

Query: 94   ------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  L +     +   +  + ++     + G GLNL  G ++ V     ++     Q 
Sbjct: 966  DGKMSRLARTQAMDRFREDPSVHVILVSIMAGGLGLNLTAGNHVYVM-EPQYNPAAEAQA 1024

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R+      + G KR V +   I +N+ +E ++   + K  + +L ++
Sbjct: 1025 VDRV-----HRLGQKRPVRIIRYIMENSFEEQMVALQQKKIKLANLSMD 1068


>gi|196010103|ref|XP_002114916.1| hypothetical protein TRIADDRAFT_58909 [Trichoplax adhaerens]
 gi|190582299|gb|EDV22372.1| hypothetical protein TRIADDRAFT_58909 [Trichoplax adhaerens]
          Length = 1351

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 85  QKAFPQGRTLDKDP-CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +     G T  +D    +  +N    P  +      + G GLNLQ   + +V F   W+ 
Sbjct: 879 RYLRLDGTTKAEDRGQLLALFNAENSPYFIFLLSTRAGGLGLNLQ-SADTVVIFDSDWNP 937

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q        R  + G +  V V  L+   +++E +L   R K  + + ++ A
Sbjct: 938 HQDLQA-----QDRAHRIGQQNEVRVLRLMTVQSVEEKILAAARYKLNVDEKVIQA 988


>gi|289577895|ref|YP_003476522.1| SNF2-related protein [Thermoanaerobacter italicus Ab9]
 gi|289527608|gb|ADD01960.1| SNF2-related protein [Thermoanaerobacter italicus Ab9]
          Length = 931

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 76/213 (35%), Gaps = 30/213 (14%)

Query: 7   FQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKAL 59
            Q +LYC L  +      + +      K ++L        +E             K++ L
Sbjct: 700 LQEKLYCQLIEDYKNKGKSESPLGVLQKLMELCAHPRLVRDEGEVNTFQLLSESGKLQRL 759

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
             ++ +        ++  H+    A L+K              G         I ++ E 
Sbjct: 760 IELLNEIKRRGEKAVIFTHYIKMQAILRKVIMDVFGINCPVINGSIKGDRMNVIDKFKES 819

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++     + G G+ +    N ++ ++  W+    +Q  +R+      + G  R V 
Sbjct: 820 SGFGVIILSTRAAGVGITITEANN-VIHYTRDWNPAVEKQATDRV-----YRIGQTREVN 873

Query: 167 VYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           +YY I  +    T++E + + L+ K  + + ++
Sbjct: 874 IYYPICISSRGKTVEERLNEVLQKKLQLLNEVI 906


>gi|296419114|ref|XP_002839164.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635170|emb|CAZ83355.1| unnamed protein product [Tuber melanosporum]
          Length = 759

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 29/149 (19%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGK---------- 108
               IV   F S L  ++              G   + D         G+          
Sbjct: 520 KNKTIVFSQFTSMLDLIEPFLHRNGIAFTRYDGSMKNDDREASLRRLRGEGEYAPSPGKE 579

Query: 109 ----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L         GLNL     +++    +W+    +Q I+R+      + G +  
Sbjct: 580 DRSWCGVLLCSLKCGALGLNLTAACRVVIL-EPFWNPFVEEQAIDRV-----HRIGQETD 633

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           V VY +    +++E +LQ    K  +   
Sbjct: 634 VVVYKITVAGSVEERILQLQDQKRELAKA 662


>gi|167535565|ref|XP_001749456.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772084|gb|EDQ85741.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1326

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 31/153 (20%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDP---------------------CTIQEWNEG 107
             +++       L  L++   +    + +                        I+++N+ 
Sbjct: 836 EKVLIFSQSIPALDLLEQYLARVNVPNSNERWEKDKHYFRLDGSTHATSRTKLIEDFNDT 895

Query: 108 KIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +     L      +   G+NL    N +V     W+     Q +      R  + G  R
Sbjct: 896 DVNDNCHLFLLSTRAGSLGINLT-AANRVVILDASWNPTHDSQAV-----CRVYRYGQSR 949

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +Y LIA  T++E +  R   K  +   +++
Sbjct: 950 NCHIYRLIASGTMEETIYNRQIHKLGLSQRVVD 982


>gi|164659870|ref|XP_001731059.1| hypothetical protein MGL_2058 [Malassezia globosa CBS 7966]
 gi|159104957|gb|EDP43845.1| hypothetical protein MGL_2058 [Malassezia globosa CBS 7966]
          Length = 526

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 84  LQKAFPQGRTL-DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           ++     G T  D     ++++N+   +  +      + G GLNLQ   + ++ +   W+
Sbjct: 13  IKYLRLDGSTKPDDRSVLLRQFNDPNSEYDVFIRSTRAGGLGLNLQ-SADTVIIYDSDWN 71

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +  Q        R  + G K  V +  L+ + ++++ +L R ++K  I   ++ A K
Sbjct: 72  PHQDLQA-----QDRAHRIGQKVEVRILRLVTEKSVEKTILARAQSKLEINGKVIQAGK 125


>gi|291526268|emb|CBK91855.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium rectale
           DSM 17629]
          Length = 559

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 78/208 (37%), Gaps = 26/208 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY   +  +  D++   + + N  + T++  QL +G     ++         K+  ++ 
Sbjct: 349 KQYRDIKNGIVADME-NILASVNPLNCTLRLRQLTSGNPNLTDD-------SPKLDRIKE 400

Query: 62  IIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN-EGKI 109
           ++E+    N    I+   +++    L     +   +        ++    +  +      
Sbjct: 401 MLEEEIIPNGHKAIIFSQWSTIAKDLGIELSEYDPIVITGEVHPEQRQKLVDNFQTNPHC 460

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL L    + + F    W+  ++ Q  +R       + G   AV V  
Sbjct: 461 KVAIGTIGAMGTGLTL-NKASYVFFMDKAWNSGDNAQAEDR-----AHRIGTVGAVNVIS 514

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++A+ TIDE V   L     + D +++ 
Sbjct: 515 MVAKGTIDEAVEDYLLENKDLIDRVVDG 542


>gi|197308128|gb|ACH60415.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308130|gb|ACH60416.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308132|gb|ACH60417.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308134|gb|ACH60418.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308136|gb|ACH60419.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308138|gb|ACH60420.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308140|gb|ACH60421.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308142|gb|ACH60422.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308144|gb|ACH60423.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308146|gb|ACH60424.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308148|gb|ACH60425.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308150|gb|ACH60426.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308152|gb|ACH60427.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308154|gb|ACH60428.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308156|gb|ACH60429.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308158|gb|ACH60430.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
          Length = 73

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+      +      + G G+NL    +  + +   W+ +   Q ++R       +
Sbjct: 1   IKDFNDPDSKFCIFLLSTRAGGLGINLT-AADTCIIYDSDWNPQMDMQAMDRC-----HR 54

Query: 159 AGFKRAVFVYYLIAQNTID 177
            G  + V VY LI  ++++
Sbjct: 55  IGQTKPVHVYRLITAHSVE 73


>gi|301062743|ref|ZP_07203355.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300443150|gb|EFK07303.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 896

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 25/180 (13%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFP 89
           +++   + Y  + K        K+  L  +I++    +   +++   + +    + +   
Sbjct: 581 MRMVCDSTYLIDRKTHV---SPKLTELASVIDELVIESKRKMVIFSEWTTMTFLIARHLS 637

Query: 90  QGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +             + K    I E+ N     +      + G GLNLQ   + +V F L 
Sbjct: 638 EVGIPFVELSGKIPVKKRQSLIDEFTNNPDCRVFL-STDAGGTGLNLQ-AADCVVNFELP 695

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+  +  Q I R+      + G K     V   I + T++E +   ++ K+ +   +   
Sbjct: 696 WNPAKLNQRIGRVS-----RIGQKSQCINVVNFICKGTVEEKIFAGIQLKTELFKGVFEG 750


>gi|302658649|ref|XP_003021026.1| SNF2 family helicase/ATPase, putative [Trichophyton verrucosum HKI
            0517]
 gi|291184901|gb|EFE40408.1| SNF2 family helicase/ATPase, putative [Trichophyton verrucosum HKI
            0517]
          Length = 1932

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  I++++      I++   +   L+ L         +     G+T +     
Sbjct: 1312 NSHRTQMVGQIVDESIKAGDKILIFSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQA 1371

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +    +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1372 ATRDFTDSDAHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1425

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1426 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMALRAID 1462


>gi|115781768|ref|XP_783354.2| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein [Strongylocentrotus purpuratus]
 gi|115939876|ref|XP_001181420.1| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein [Strongylocentrotus purpuratus]
          Length = 1637

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 39/181 (21%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT------------------- 93
           KI  L  I+E++      I+V     S L+ ++K   +                      
Sbjct: 809 KIIVLFHILEESIRLGDKILVFSQSLSCLSVIEKFLAKSTIPQPPNPPPLMPREWVRNQT 868

Query: 94  ---------LDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    + +    I  +N      I L      +   G+NL  G N +V     W+ 
Sbjct: 869 YFRLDGSTAVSEREKMINRFNSPDNKTIMLFLLSTKAGCLGINL-IGANRVVVMDASWNP 927

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q +      R  + G  +   VY L++  T+++ +  R  +K  + D +++ +  E
Sbjct: 928 CHDAQAV-----CRVYRYGQTKKCHVYRLVSDQTLEKKIYDRQISKKGMSDRVVDEMNPE 982

Query: 202 T 202
            
Sbjct: 983 M 983


>gi|118400670|ref|XP_001032657.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89287000|gb|EAR84994.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 1326

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFP----------QGRTLD 95
           ++E    K+ A++  +E    +   +I+  H    L R++K              G    
Sbjct: 286 YQETGLAKLDAVKEYLEDLMDSQVKLIIFAHHQQVLDRIEKMVKCDFRRQYIRIDGNVKQ 345

Query: 96  KDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERIG 152
           ++   +  Q  N  K  +      +  HG+ L    +++         E +    +    
Sbjct: 346 EERVDLVNQFQNNTKTTVAILSLQAASHGITLTASSHVIF-------AELYPTPAVMLQA 398

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  +      V  +YLI ++T+DE +   L  K  +   +L+  +K+
Sbjct: 399 EDRSHRINQNNNVLCHYLIGKDTVDEDIFNLLMQKYKVTSSILDGQRKD 447


>gi|312377807|gb|EFR24547.1| hypothetical protein AND_10782 [Anopheles darlingi]
          Length = 866

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           + ALE + ++   A   + +   + L R      + + L+KD   + E       ++   
Sbjct: 723 LSALEPVYKEEEEA--FLYWWCKTPLGR-----RRSKQLEKDHEAMMEMEN----IMLLS 771

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL  G N L      W+ +   Q  +RI      + G  + V+++  I Q T
Sbjct: 772 LTAGGVGLNL-VGANHLFLLDPHWNPQLEAQAQDRI-----YRVGQTKPVYIWKFICQET 825

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           +++ +L   + K  I D +L  
Sbjct: 826 VEQKILALQQHKLEIADGVLTG 847


>gi|327300655|ref|XP_003235020.1| hypothetical protein TERG_04072 [Trichophyton rubrum CBS 118892]
 gi|326462372|gb|EGD87825.1| hypothetical protein TERG_04072 [Trichophyton rubrum CBS 118892]
          Length = 1877

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  I++++      I++   +   L+ L         +     G+T +     
Sbjct: 1311 NSHRTQMVGQIVDESIKAGDKILIFSGYLHTLSYLGSMLDARGHKYCRLDGKTPIATRQA 1370

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +    +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1371 ATRDFRDSDAHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1424

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1425 GQTKDVFVYRFVMGGTFEELIHEKGIFKKNMALRAID 1461


>gi|296005042|ref|XP_002808858.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|225632255|emb|CAX64136.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1221

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 96   KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I+ +++ + I +      + G GLNL    N ++     W+        +R    
Sbjct: 1109 ERQKIIKRFSKDENIFVFLLSTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQAED 1162

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R  + G K  VF+Y L  +NTI+E +L+  + K  +   
Sbjct: 1163 RVHRLGQKNEVFIYRLCCKNTIEEAILKCNKAKLHLDQA 1201


>gi|168062755|ref|XP_001783343.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162665144|gb|EDQ51838.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2174

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 18/149 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEG--K 108
             ++       ++        L  ++              G T   +    IQ++N    +
Sbjct: 1813 SLMTSRKGHSVLFFSTMTRLLDVMEDYLEWKGYKYLRLDGSTGGSERGALIQDFNAPQSE 1872

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +   Q   R       + G KR V V 
Sbjct: 1873 AFIFLLSIRAGGIGINLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIGQKRDVLVL 1926

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +I+E V      K  + +  + A
Sbjct: 1927 RFETVKSIEEHVRASAEYKLGVANQSITA 1955


>gi|260809914|ref|XP_002599749.1| hypothetical protein BRAFLDRAFT_205765 [Branchiostoma floridae]
 gi|229285031|gb|EEN55761.1| hypothetical protein BRAFLDRAFT_205765 [Branchiostoma floridae]
          Length = 1002

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                G +       I ++N    P  L      +   G+NL  G N +V F   W+   
Sbjct: 680 YRLDGGTSGQDREKMINQFNVPNSPTWLFLLSTRAGCLGVNL-VGANRVVVFDASWNPCH 738

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Q +      R  + G  +   +Y L+   ++++ +  R   K  + D +++ L+ E
Sbjct: 739 DCQAV-----CRVYRYGQTKPCHIYRLVTDKSLEKKIYDRQVNKQGMSDRVVDELQPE 791


>gi|308494324|ref|XP_003109351.1| hypothetical protein CRE_08005 [Caenorhabditis remanei]
 gi|308246764|gb|EFO90716.1| hypothetical protein CRE_08005 [Caenorhabditis remanei]
          Length = 880

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILV 133
                L  ++ A   G T     P  I+++ E   I +      + G GLNL    N ++
Sbjct: 470 WVRIALKIIRHASLTGSTTAAARPKIIKKFEEDADIKVFLMTTRAGGLGLNLTC-ANKVI 528

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+ +   Q   RI      + G +  V +  LI+  T+++    +   K  +   
Sbjct: 529 IFDPDWNPQADNQAKNRI-----YRMGQENDVSIVRLISNGTLEDRKFFKQVQKEMLAAQ 583

Query: 194 LL 195
           LL
Sbjct: 584 LL 585


>gi|302505719|ref|XP_003014566.1| SNF2 family helicase/ATPase, putative [Arthroderma benhamiae CBS
            112371]
 gi|291178387|gb|EFE34177.1| SNF2 family helicase/ATPase, putative [Arthroderma benhamiae CBS
            112371]
          Length = 1862

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  I++++      I++   +   L+ L         +     G+T +     
Sbjct: 1312 NSHRTQMVGQIVDESIKAGDKILIFSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQA 1371

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++      +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1372 ATRDFTASDAHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1425

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1426 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMALRAID 1462


>gi|195387391|ref|XP_002052379.1| GJ22014 [Drosophila virilis]
 gi|194148836|gb|EDW64534.1| GJ22014 [Drosophila virilis]
          Length = 267

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWN 105
           +  E   +KI   + ++E   ++  +     N  D  RL    P+    +     I+ +N
Sbjct: 34  NVVEYFFKKITESDELLEDIPSSYKVSNTWINGQDYYRLDGKTPK----NIRHEMIKRFN 89

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +  +      + G G+NL  G N ++     W+    QQ I RI      + G K
Sbjct: 90  SEANRRARVFLISAKAGGQGINL-IGANRVIILDTSWNPSNDQQNIFRIF-----RLGQK 143

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  ++Y LIA  T++E V  R  TK  +   +++
Sbjct: 144 KNCYIYRLIAMGTMEEKVYSRSVTKQAMSFRVVD 177


>gi|328854430|gb|EGG03562.1| hypothetical protein MELLADRAFT_89936 [Melampsora larici-populina
           98AG31]
          Length = 767

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +       ++   + S +  +           ++      T ++         +  +   
Sbjct: 594 KSHGGGKSVIYTQWKSFIDWIIMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAF 653

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    + +      W+ +  QQ ++R+      + G  + V V++++ 
Sbjct: 654 VVSIEAGGVGLNMTC-ADEVYLMDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVT 707

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             +I++ +    + K+ +   ++
Sbjct: 708 GQSIEQHLYNVQKRKAALAKRVI 730


>gi|321265706|ref|XP_003197569.1| helicase domain DNA excision repair protein (Rad26L) [Cryptococcus
           gattii WM276]
 gi|317464049|gb|ADV25782.1| Helicase domain DNA excision repair protein (Rad26L), putative
           [Cryptococcus gattii WM276]
          Length = 1016

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  + + +    ++     + G GLNL    N +V F   W +            
Sbjct: 676 ERQEMIDRFQDREKDHFIMLISTRAGGVGLNLT-AANKVVIFDPSWTM------------ 722

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 723 DRAFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 763


>gi|195028444|ref|XP_001987086.1| GH20163 [Drosophila grimshawi]
 gi|193903086|gb|EDW01953.1| GH20163 [Drosophila grimshawi]
          Length = 1645

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    + E+N  + I L      +   G+NL  G N ++ F   W+     Q + RI   
Sbjct: 1046 ERERLVNEFNANRNIKLFLISTRAGSLGINLT-GANRVIIFDASWNPCHDTQAVYRI--- 1101

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +  +VY ++    +++ +  R   K  + D +++
Sbjct: 1102 --YRYGQTKQCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVD 1141


>gi|156550927|ref|XP_001603100.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked
            helicase II) [Nasonia vitripennis]
          Length = 1283

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYH-------FNSDLARLQKAFPQGRT---------- 93
              K+  L  I++++      ++V              L  +      G            
Sbjct: 833  STKLSLLFGILKESEQIGDKVLVFSQSLYSLTLIEHFLNLIDNQTQDGGEAENLDNHTGT 892

Query: 94   ---------LDKDPCTIQE------WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFF 135
                     LD              +N  K     L      + G G+NL    N ++ F
Sbjct: 893  WALGLDYFRLDGSTSAENRSAWCKIFNNPKNTRARLFLISTRAGGLGINLT-AANRVIIF 951

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q I RI      + G K+  +VY  +A  T++E +  R  TK ++   ++
Sbjct: 952  DASWNPSHDVQSIFRI-----YRFGQKKPCYVYRFLAAGTMEEKIYNRQVTKLSLACRVV 1006

Query: 196  N 196
            +
Sbjct: 1007 D 1007


>gi|167628577|ref|YP_001679076.1| helicase (snf2 family) protein [Heliobacterium modesticaldum Ice1]
 gi|167591317|gb|ABZ83065.1| helicase (snf2 family) protein [Heliobacterium modesticaldum Ice1]
          Length = 537

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 21/136 (15%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +A   P++V   ++  L R  +A  Q            ++ +  +P+      S G G+N
Sbjct: 370 QAAGIPVLV---YHGGLGRWTRAMTQ-----------HQFQKSDVPV-LISTESGGEGIN 414

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ+  + ++ + L W+    +Q I R+      + G  R V VY L  + TI+E +L+ L
Sbjct: 415 LQF-CSQVINYDLPWNPMRVEQRIGRV-----HRLGQSRDVHVYNLSTRGTIEEQMLRLL 468

Query: 185 RTKSTIQDLLLNALKK 200
             K  +    +  +++
Sbjct: 469 SEKIEMFAQTIGPIER 484


>gi|326433455|gb|EGD79025.1| helicase DNA-binding protein [Salpingoeca sp. ATCC 50818]
          Length = 1742

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPII----VAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
            +    V  + + AL  ++E      ++     A+       RL  +       D     I
Sbjct: 1153 REKVLVFSQSLFAL-DLVESFLKRLVVPGTREAWQKKKHYFRLDGSTSASERAD----MI 1207

Query: 102  QEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + +N+     +        +   G++L    + +V     W+     Q +      R  +
Sbjct: 1208 EAFNDRSNLDMHAFLISTRAGSLGISLT-AASRVVILDTSWNPSHDAQAV-----CRVYR 1261

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  +  F+Y L+A  T++E +  R  TK  + + +++
Sbjct: 1262 YGQDKPCFIYRLVAAGTMEETIYNRQVTKVGLANRVVD 1299


>gi|171685718|ref|XP_001907800.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942820|emb|CAP68473.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1877

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
            H  KI AL  ++ +        ++       L  L+  F + +           ++    
Sbjct: 1255 HSYKIVALMFLLGEFRKVGDKALIFTQSIPALDFLESIFKRRQIGYQRLDGHTPINTRQA 1314

Query: 100  TIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +I+++N      +      + G GLN+ YG N ++     +   + QQ I R       +
Sbjct: 1315 SIKKFNSNDSADVYLISTKAGGVGLNI-YGANRVIILDFKYSPTDEQQAIGR-----AYR 1368

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  + V+VY+L+   T +  + +    K+ +   +++
Sbjct: 1369 LGQTKPVYVYWLMIGGTFEATIHKSAIFKTQLASRVID 1406


>gi|330804383|ref|XP_003290175.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
 gi|325079732|gb|EGC33319.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
          Length = 1134

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 67  NAAPIIVAYH-------FNS--DLARLQKAFPQGRT--LDKDPCTIQEWNEG-KIPLLFA 114
           +   +++          F S  D  +L+     G      K    I  +N          
Sbjct: 677 DGHRLLMFSQSVKMLDDFESVLDFLKLKYLRIDGSISSTKKRQEIIDLYNTDHSYFAFIM 736

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  GLNL     +L+ F   W+       I+   V R  + G KR V VY LI   
Sbjct: 737 TIQVGALGLNLTSADRVLI-FDPSWN------TIDNQAVDRAYRIGQKRDVVVYRLITCG 789

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+E + ++   K ++   +LN
Sbjct: 790 TIEEKIYRKQVFKGSLMKTMLN 811


>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1406

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-------PQGRTL--------D 95
              K + L   +E  +     ++V   +   L  + K         P    L         
Sbjct: 1194 SVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGQEVLYMHGKLEQK 1253

Query: 96   KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I E+N+ K    +  A   +C  G++L  G + ++   + W+       +ER  +
Sbjct: 1254 QRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVWN-----PAVERQAI 1307

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G +R V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1308 SRAYRIGQQRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1349


>gi|119181856|ref|XP_001242107.1| hypothetical protein CIMG_06003 [Coccidioides immitis RS]
          Length = 2054

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
            H  +   L+ II+++      +++  H    L  ++      R           +     
Sbjct: 1370 HSHRAAMLDQIIKQSVNAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITSRQS 1429

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N+   P  +      + G GLN+  G N +V F   ++    +Q + R       
Sbjct: 1430 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPTWEEQAVGR-----AY 1483

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ VFVY  IA  T ++++  +   K+ +   +++
Sbjct: 1484 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD 1522


>gi|134085395|ref|NP_001076824.1| helicase ARIP4 [Xenopus (Silurana) tropicalis]
 gi|166217265|sp|A4IHD2|ARIP4_XENTR RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2
 gi|134023855|gb|AAI35474.1| rad54l2 protein [Xenopus (Silurana) tropicalis]
          Length = 1396

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 39/184 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------------- 92
           +  K+  L  +IE++      I+V     S L+ +++   + +                 
Sbjct: 714 NSPKMVLLFHLIEESMRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIR 773

Query: 93  -----------TLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +  +    I ++N+    K+ L      +   G+NL  G N +V F   
Sbjct: 774 NVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNL-IGANRVVVFDAS 832

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G ++  ++Y L++  T+++ +  R  TK  + D +++ L
Sbjct: 833 WNPCHDAQAV-----CRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDL 887

Query: 199 KKET 202
             E 
Sbjct: 888 NPEV 891


>gi|70953048|ref|XP_745650.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526041|emb|CAH75841.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1029

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T+++     +      + +      + G GLNL    N ++     W+        +R  
Sbjct: 888 TIERQQIIKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQA 941

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R  + G K+ V++Y L  +NTI+E VL+  + K  +   
Sbjct: 942 EDRVHRLGQKKEVYIYRLCCKNTIEETVLKCCKAKLHLDQA 982


>gi|67540104|ref|XP_663826.1| hypothetical protein AN6222.2 [Aspergillus nidulans FGSC A4]
 gi|40738446|gb|EAA57636.1| hypothetical protein AN6222.2 [Aspergillus nidulans FGSC A4]
          Length = 1933

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 21   EAFNSASKTVKCLQLANG----------AVYYDEEKHWKEVHDEKIKALEV---IIEKAN 67
             A  +A      ++ A              Y       K +    +   E    + E   
Sbjct: 1717 SAITAAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTKALLSHLLATAEESAKLPEGEA 1776

Query: 68   AAPIIVAYHFNSDLARLQ-KAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAH 115
                +V   + S L  ++     QG T          L      +  + +     +L A 
Sbjct: 1777 PIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRDDNNTTILLAT 1836

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    ++ +     ++     Q I+R+      + G  R V     I +++
Sbjct: 1837 IGAGGVGLNLTAASHVYIM-EPQYNPAAVAQAIDRV-----HRLGQTREVTTVQFIMKDS 1890

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I+E + +  + K  + D+ LN  K +   V
Sbjct: 1891 IEEKIAELAKKKQQLADMSLNRGKLDKAEV 1920


>gi|304407151|ref|ZP_07388805.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344138|gb|EFM09978.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 606

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-I 101
             + K +    +I + +   +I+   + +    L + F        P    +++     +
Sbjct: 381 TANTKAEKAMELIREIDDK-VIIFTEYRATQEYLLQYFRSHGLQAVPYRGGMNRGKKDWM 439

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +   G+  +L A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G 
Sbjct: 440 MDLFRGRAQVLIA-TEAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQ 492

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           K  V +Y L    TI+E ++  L  K  + +L++
Sbjct: 493 KHDVRIYNLCTLGTIEEHIVNLLHEKINLFELVI 526


>gi|296412641|ref|XP_002836031.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629831|emb|CAZ80188.1| unnamed protein product [Tuber melanosporum]
          Length = 876

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 24/167 (14%)

Query: 51  VHDEKIKALEV-IIE----KANAAPI--IVAYHFNSDLARLQKAFPQGR----------T 93
               K+KAL   ++E       ++PI  +V   + S +  ++ AF              T
Sbjct: 697 GPSTKVKALISSLLENKKASTTSSPIKSVVFSCWTSHMDLIEIAFKDNGINFVRLDGSMT 756

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    ++++    +I ++     + G GLNL       V     ++     Q I+RI 
Sbjct: 757 RTQRNRVMEDFERAPEISVILISIMAGGLGLNLTAACKAYVM-EPQFNPAAESQAIDRI- 814

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G  R V     I +++ +  +++  + K+ + +L +++ +
Sbjct: 815 ----HRLGQTRPVTTTRYIMRDSFEMKIVELQKKKTELANLSMSSGR 857


>gi|110289185|gb|ABB47753.2| SNF2 domain-containing protein, putative, expressed [Oryza sativa
            Japonica Group]
          Length = 1476

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 33/181 (18%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KA 87
            DE  + +  +  K+  L  I+   +      +V     S L  ++             K 
Sbjct: 1105 DENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSKLQVNGKEGKY 1164

Query: 88   FPQGRTLDK---------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFF 135
            + QG+   +             ++ +N+ +   +        +   G+NL +  N ++  
Sbjct: 1165 WKQGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINL-HSANRVILL 1223

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q I R+      + G  + V+ Y L+A  T++E + +R  TK  +   ++
Sbjct: 1224 DGSWNPTHDLQAIYRVW-----RYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVV 1278

Query: 196  N 196
            +
Sbjct: 1279 D 1279


>gi|328856775|gb|EGG05895.1| hypothetical protein MELLADRAFT_87660 [Melampsora larici-populina
            98AG31]
          Length = 1354

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 21/135 (15%)

Query: 72   IVAYHFNSDLARLQKAFPQ-----GR--------TLDKDPCTIQEWNEGKIPLLFAHPAS 118
            +V   +   L R+  A  +     GR          +K    ++   + K  +L     +
Sbjct: 1174 VVFSQWTKMLDRIGDALDEFNIGYGRLDGTMSRPERNKAMEDLK--TDPKCEVLLVSLRA 1231

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL      +     +W+     Q ++R+      + G  + V +   I   ++++
Sbjct: 1232 GGVGLNLTC-AQRVYLMEPFWNPAVENQAVDRV-----HRLGQTKPVRMIRYIIAGSVEQ 1285

Query: 179  LVLQRLRTKSTIQDL 193
             +L+  + K+ + ++
Sbjct: 1286 NMLEIQKRKTELANM 1300


>gi|317158963|ref|XP_001827440.2| DNA repair helicase rad5,16 [Aspergillus oryzae RIB40]
          Length = 1113

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 50   EVHDEKIKALEVI----IEKANAAPIIVAYHFNSDLARL-----QKAFPQGRT-----LD 95
            E+   K+  ++ I    I++     I++   F   L  +     ++ +          L 
Sbjct: 923  EMTSAKLVKIQEIVKGWIDENPDVKIVIFTQFLDFLRLVGLMCNKEKWVATSLHGKLSLQ 982

Query: 96   KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ ++ +E ++ +L A   + G GL++    N  +   LWW+    QQ   R+   
Sbjct: 983  AREQSMDKFRDEKEVRILIASLKAGGIGLDMSM-ANKCILVDLWWNEAIQQQAFCRL--- 1038

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               + G  + V    +I +++IDE +L+    K+ 
Sbjct: 1039 --YRIGQSKDVEFVKIIIKDSIDEYLLKMQTRKTA 1071


>gi|169830699|ref|YP_001716681.1| helicase domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637543|gb|ACA59049.1| helicase domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1147

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 29/166 (17%)

Query: 51  VHDEKIKALEVIIEKAN-----AAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
             + K+  L+ ++ K       A  +++   F   L  L                     
Sbjct: 476 DSEAKLSKLKDLLHKEGFFDQPAKRLLLFTEFKDTLTYLVGNLKTWGLKVGYIHGGMKPG 535

Query: 95  -----DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                       Q++ EG+I +L A   + G G+NLQ   NIL  + + W+    +Q + 
Sbjct: 536 SRDEPGTRLYAEQQFREGEIQVLVA-TEAAGEGINLQV-CNILFNYDIPWNPNRLEQRMG 593

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           RI      + G ++   ++  +A NTI+  VLQRL  K   I+D L
Sbjct: 594 RI-----HRYGQRKDCLIFNFVATNTIEGRVLQRLLEKLQEIRDAL 634


>gi|194221261|ref|XP_001495142.2| PREDICTED: RAD54-like 2 (S. cerevisiae) [Equus caballus]
          Length = 1466

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S LA +++   +         +   +Q+W  
Sbjct: 718 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGAEGQGVQKWVR 777

Query: 105 N------EGKIP--------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           N      +G  P                    L      +   G+NL  G N +V F   
Sbjct: 778 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 836

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 837 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 891


>gi|300933243|ref|ZP_07148499.1| hypothetical protein CresD4_04190 [Corynebacterium resistens DSM
           45100]
          Length = 836

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 74/196 (37%), Gaps = 25/196 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            + E + + + E+IE + +A +    +         D  + +      K++ +  +++  
Sbjct: 615 MEVEEWIEPKPEDIETYENAVQRGHFM---------DMRQAFSGPRSAKMERITELLDDG 665

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKI-PLLFAHP 116
           A+ A  I+  +F S L  L              G +  +    + ++       +L    
Sbjct: 666 ADGAKTIIFTYFRSVLDGLVAHLGDRAFGPIAGGVSHQERQKAVDDFTAASPGAVLVCQI 725

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+Q   + +V F    +     Q + R       + G  R V V+ L+  +++
Sbjct: 726 TAASEGLNIQ-AASRVVIFEPQLNPAVEAQAVAR-----AHRMGQIRTVEVHRLLTPDSV 779

Query: 177 DELVLQRLRTKSTIQD 192
           +E +   L  K  + +
Sbjct: 780 EEQLTAMLADKRALFE 795


>gi|289679709|ref|ZP_06500599.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae FF5]
          Length = 339

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 29  TVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K  Q+      V  D   + K+    K+ +L  + E+  A    I++   F S L+ +
Sbjct: 231 LLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLI 290

Query: 85  QKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           ++   Q         G T D+    I ++  GK+P+      + G GLNL
Sbjct: 291 EEELKQRGIAYALLTGSTRDRR-TPIHDFQSGKLPIFLISLKAGGTGLNL 339


>gi|291393761|ref|XP_002713270.1| PREDICTED: RAD54-like 2 [Oryctolagus cuniculus]
          Length = 1467

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRT---------------- 93
           +  K+  L  +IE++      I+V     S LA +++   +                   
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGAEGQGAQKWVR 778

Query: 94  ------LD------KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                 LD      +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|319655732|ref|NP_956947.2| transcriptional regulator ATRX [Danio rerio]
          Length = 2013

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 19/197 (9%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +E   +   E +          + L+LA      D++          +  +E  +E A  
Sbjct: 1548 KEFVSEEDAEVLTHSGKMVLLFEILRLAEE---VDDKVLVFSQSLISLDLIEDFLELAGR 1604

Query: 69   APII---VAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            A        Y      F + D  RL  +     T  K      + +  +  L      + 
Sbjct: 1605 AKEEGKESPYKGEGKWFRNIDYYRLDGST-NALTRKKWAEDFNDISNVRGRLFLISTRAG 1663

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ T++E 
Sbjct: 1664 SLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQVKTVYVYRFLAQGTMEEK 1717

Query: 180  VLQRLRTKSTIQDLLLN 196
            +  R   K ++   +++
Sbjct: 1718 IYDRQVAKQSLSFRVVD 1734


>gi|301604464|ref|XP_002931858.1| PREDICTED: transcriptional regulator ATRX [Xenopus (Silurana)
            tropicalis]
          Length = 2268

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 56   IKALEVIIE-------KANAAPIIVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQ 102
            +  +E  +E       + NA+   V Y      F + D  RL       +T  K      
Sbjct: 1819 LDLIEDFLELASTEKNEENASEKPVFYKGDGKWFRNIDYYRLDGQTS-PQTRKKWAEEFN 1877

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    +  L      +   G+NL    N ++ F   W+     Q I R+      + G  
Sbjct: 1878 DSTNIRGRLFLISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQI 1931

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + VFVY  +AQ T++E +  R   K ++   +++
Sbjct: 1932 KPVFVYRFLAQGTMEEKIYDRQIAKQSLSFRVID 1965


>gi|196003014|ref|XP_002111374.1| hypothetical protein TRIADDRAFT_55311 [Trichoplax adhaerens]
 gi|190585273|gb|EDV25341.1| hypothetical protein TRIADDRAFT_55311 [Trichoplax adhaerens]
          Length = 954

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 37/176 (21%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYH-------FNSDLARLQ----------KAFPQGR 92
           H  K+  L  +IE +      +++              L++++          K + +  
Sbjct: 697 HGGKMVILMDLIENSVKLGDRMLIFSQSLVTLSIIEHFLSKIEIPCTSSEGNNKKWAKNE 756

Query: 93  TLDK---------DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           +  +             I  +N        L      +   G+NL    N +V +   W+
Sbjct: 757 SYFRIDGSVPSHERSRLIDLFNSPDNNSVWLFLISTRAGNLGINL-VAANRVVIYDSAWN 815

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q   RI      + G K+  ++Y L+  NT++ ++ +R   K  +   +++
Sbjct: 816 PCYDNQAAFRI-----YRYGQKKPCYIYRLVGSNTMEHVIYKRQIRKQGLSRRIID 866


>gi|328721366|ref|XP_001942895.2| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon
           pisum]
          Length = 1045

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 40/170 (23%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI-------------- 101
           ++  E I        +++       L  +Q        +D D                  
Sbjct: 741 LQECEDI-----GDKVLLFSQSLLTLDLIQDFLENAEDIDDDGGPYGKSWTHGVDFYRID 795

Query: 102 ------------QEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       + +N     K+ LL     +   G+NL  G N ++ F + W+   + Q
Sbjct: 796 GSANSRTREDFCERFNDITNTKMRLLLLSTKAFNLGINL-IGANRVIIFDVTWNPSLNVQ 854

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R+      + G K+  ++Y LI++ T+++ + +R  +K +    +++
Sbjct: 855 SIFRVF-----RFGQKKPCYIYRLISEGTMEQKIYERQISKLSTAFRVVD 899


>gi|115482344|ref|NP_001064765.1| Os10g0457700 [Oryza sativa Japonica Group]
 gi|113639374|dbj|BAF26679.1| Os10g0457700 [Oryza sativa Japonica Group]
          Length = 1319

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 33/181 (18%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-------------KA 87
            DE  + +  +  K+  L  I+   +      +V     S L  ++             K 
Sbjct: 1105 DENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSKLQVNGKEGKY 1164

Query: 88   FPQGRTLDK---------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFF 135
            + QG+   +             ++ +N+ +   +        +   G+NL +  N ++  
Sbjct: 1165 WKQGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINL-HSANRVILL 1223

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q I R+      + G  + V+ Y L+A  T++E + +R  TK  +   ++
Sbjct: 1224 DGSWNPTHDLQAIYRVW-----RYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVV 1278

Query: 196  N 196
            +
Sbjct: 1279 D 1279


>gi|310792112|gb|EFQ27639.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1103

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 51   VHDEKIKAL-EVIIEKANAA---------PIIVAYHFNSDLARLQKAFPQGR-------- 92
                K +AL E +++    +           +V   + S L  +Q A             
Sbjct: 919  GPHTKTRALIEDLLKSKADSEASPHEPPYKSVVFSTWTSHLDLIQMALDNVGIKYVRLDG 978

Query: 93   --TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T       +  + +   + ++     + G GLNL  G ++ V     ++     Q I+
Sbjct: 979  SMTRVARTQAMDSFRDDNSVHVILVSITAGGLGLNLTAGSSVYVM-EPQYNPAAEAQAID 1037

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G KR V     I +N+ +E +L+    K+ +  L ++
Sbjct: 1038 RV-----HRLGQKRPVRTVRYIMRNSFEEKMLELQEKKNKLASLSMD 1079


>gi|238909201|ref|YP_002939668.1| non-specific serine/threonine protein kinase [Eubacterium eligens
           ATCC 27750]
 gi|238873438|gb|ACR73147.1| non-specific serine/threonine protein kinase [Eubacterium eligens
           ATCC 27750]
          Length = 559

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 78/208 (37%), Gaps = 26/208 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY   +  +  D++   + + N  + T++  QL +G     ++         K+  ++ 
Sbjct: 349 KQYRDIKNGIVADME-NILASVNPLNCTLRLRQLTSGNPNLTDD-------SPKLDRIKE 400

Query: 62  IIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN-EGKI 109
           ++E+    N    I+   +++    L     +   +        ++    +  +      
Sbjct: 401 MLEEEIIPNGHKAIIFSQWSTIAKDLGIELSEYDPIVITGEVPPEQRQRLVDNFQTNPHC 460

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL L    + + F    W+  ++ Q  +R       + G   AV V  
Sbjct: 461 KVAIGTIGAMGTGLTL-NKASYVFFMDKAWNSGDNAQAEDR-----AHRIGTVGAVNVIS 514

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++A+ TIDE V   L     + D +++ 
Sbjct: 515 MVAKGTIDEAVEDYLLENKDLIDRVVDG 542


>gi|324526853|gb|ADY48722.1| Transcription activator BRG1 [Ascaris suum]
          Length = 245

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +  +      + G GLNLQ   + ++ F   W+  +  Q        R  + G  R V
Sbjct: 20  DSEYFIFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA-----QDRAHRIGQSREV 73

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 74  RVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 107


>gi|258572168|ref|XP_002544846.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905116|gb|EEP79517.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1932

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              +   LE I++++      ++V  H    L  L+    Q             +      
Sbjct: 1381 SHRATMLEQIVKESVSAGDKVLVFSHSIPTLNYLEHILKQNGWTYCRLDGTTPISSRQVA 1440

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +N    P  +      + G GLN+  G N ++ F   ++    +Q + R       +
Sbjct: 1441 TKYFNRTDSPMQVYLISTKAGGLGLNI-PGANRVIIFDFAFNPTWEEQAVGR-----AYR 1494

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  + VFVY  ++  T ++ +  R   K+ +   +++
Sbjct: 1495 FGQTKPVFVYRFVSGGTYEDAMYNRTVFKTQLSFRVID 1532


>gi|241554086|ref|YP_002979299.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240863392|gb|ACS61054.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 493

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 24/200 (12%)

Query: 3   QYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +F+ EL   +  +      +A +   + ++ +Q+A+     D+          K++A
Sbjct: 263 IYAQFRDELAAIVVRQGRPVLDDAEDILKRLLRLVQVASNPAMVDQAYRSVPG---KMRA 319

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN-EG 107
           L+ ++  A      I+V  +F  +   L +   +        G  + K    +  +  + 
Sbjct: 320 LDELVTSAIDAREKIVVWTNFTMNAEALCRHLGEFGAVLVHGGIEIAKREEALTAFKTDP 379

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +L A P +   GL L    N  VF+   + L+++ Q  +RI      +    +  FV
Sbjct: 380 QTRVLVATPGAAKEGLTLTV-ANHAVFYDRSFSLDDYLQAQDRI-----HRISQDKPCFV 433

Query: 168 YYLIAQNTIDELVLQRLRTK 187
             LI  +T+D  V   L  K
Sbjct: 434 TNLIGMDTVDAWVDALLSAK 453


>gi|157113183|ref|XP_001651931.1| helicase [Aedes aegypti]
 gi|108877866|gb|EAT42091.1| helicase [Aedes aegypti]
          Length = 740

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 21/207 (10%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           + ++  D+ G   +   + +K    + L +  V+  +           ++ L+  I   +
Sbjct: 529 EAQVELDISGNTSQDTAAITKASSKVMLRSNPVF--DLTRMSSKIARLLELLDEKILCGD 586

Query: 68  AAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-QEWNE-GKIP-LLFAH 115
              +IV   ++S L          R++     G+   K    I  E+N+ G  P ++   
Sbjct: 587 DKAVIV-SQWSSVLDIVAHHLSSKRVKYVSLTGKVAVKFRNDIVTEFNKQGSGPKVMLLS 645

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL  G N L+   L W+ +   Q  +R+      + G K+ VFV+  +   T
Sbjct: 646 LTAGGVGLNL-VGANHLLLLDLHWNPQLEAQAQDRV-----YRVGQKKTVFVWKFMCVET 699

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           +++ +      K  I + +L   K++ 
Sbjct: 700 VEQAIRGLQEKKIGIANEVLTGTKQKG 726


>gi|71027005|ref|XP_763146.1| global transcription activator [Theileria parva strain Muguga]
 gi|68350099|gb|EAN30863.1| global transcription activator (SNF2L2), putative [Theileria parva]
          Length = 998

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 25/174 (14%)

Query: 28  KTVKCLQLANG-AVYYDEE----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
           K ++  ++ N   +Y +               K+  L++I+ +       +++     S 
Sbjct: 655 KFLQLRKICNHPFLYINSNFIPCNDLIINSSGKMCILDMILSRLYYVNHRVLIFSQMTSL 714

Query: 81  LARLQ-----KAFPQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L+     + +   R       +K    I  +NE      +      +   G+NLQ  
Sbjct: 715 LDILEVYLNYRGYKYLRLDGNLSSEKRLERINLFNEPDSQYFVFILSTKAGSLGINLQ-S 773

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + ++ +   W+ +   Q   R+      + G K  V    LI  NTI++ + +
Sbjct: 774 ADTVIIYDSDWNPQNDLQAQSRV-----HRIGQKNQVITLRLITPNTIEDNIYR 822


>gi|90078875|dbj|BAE89117.1| unnamed protein product [Macaca fascicularis]
          Length = 500

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ +   W+ +   Q ++R       + G K+ V V+ LI 
Sbjct: 1   MLSTRAGGLGINL-ASADVVILYDSDWNPQVDLQAMDR-----AHRIGQKKPVRVFRLIT 54

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
            NT++E +++R   K  +  +++ 
Sbjct: 55  DNTVEERIVERAEIKLRLDSIVIQ 78


>gi|242023584|ref|XP_002432212.1| steroid receptor-interacting snf2 domain protein, putative [Pediculus
            humanus corporis]
 gi|212517609|gb|EEB19474.1| steroid receptor-interacting snf2 domain protein, putative [Pediculus
            humanus corporis]
          Length = 2665

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I E+N    I +      +   G+NL  G N ++ F   W+     Q +      
Sbjct: 1771 EREKLINEFNANPNIHMFLVSTRAGSLGINL-VGANRVIVFDASWNPCHDTQAV-----C 1824

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            R  + G ++  FVY L+  + +++ +  R   K  + D +++ L  + 
Sbjct: 1825 RVYRYGQRKQCFVYRLVMDSCLEKKIYDRQVNKQGMADRVVDELNPDA 1872


>gi|212534796|ref|XP_002147554.1| chromatin remodeling complex subunit (Chd3), putative [Penicillium
            marneffei ATCC 18224]
 gi|210069953|gb|EEA24043.1| chromatin remodeling complex subunit (Chd3), putative [Penicillium
            marneffei ATCC 18224]
          Length = 1605

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEG--KIPLLFAH 115
               +++   F  +L  ++        L           +    I  +N    K       
Sbjct: 1071 GHRVLLFSQFLDNLDIVEDFLDGLGLLYCRLDGSMGAHEKQKQIDAYNAPDSKYFAFLLS 1130

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    + ++     ++  +  Q + R       + G ++ V V+ L+ + +
Sbjct: 1131 TRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQQKKVLVFQLMTRES 1184

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKE 201
             +E ++Q  + K  +  +L+  +  +
Sbjct: 1185 AEEKIMQIGKKKMALDHVLIEKMDAD 1210


>gi|121712770|ref|XP_001273996.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119402149|gb|EAW12570.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1818

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCT 100
              + + L+ I+ ++      +++  H    L  ++              G+T +     +
Sbjct: 1396 SYRAQLLDRIVTESINAGDKVLIFSHRIPTLNYIEHILKAANRSYCRLDGKTPIFSRQAS 1455

Query: 101  IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             + +N G +  +      + G GLN+  G N +V F   +     +Q + R       + 
Sbjct: 1456 TKRFNTGSEEQVYLISTRAGGLGLNI-PGANRVVIFDFSFSPVWEEQAVGR-----AYRL 1509

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ V+VY  I+  T +E++  +   K+ +   +++
Sbjct: 1510 GQQKPVYVYRFISGGTFEEIMYNKAVFKTQLAFRVVD 1546


>gi|260946986|ref|XP_002617790.1| hypothetical protein CLUG_01249 [Clavispora lusitaniae ATCC 42720]
 gi|238847662|gb|EEQ37126.1| hypothetical protein CLUG_01249 [Clavispora lusitaniae ATCC 42720]
          Length = 568

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    +I++ +   W+ +   Q ++R       + G K+ V V+  
Sbjct: 31  IFLLTTRAGGLGINLTT-ADIVILYDSDWNPQADLQAMDR-----AHRIGQKKQVQVFRF 84

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + +N I+E V+ R   K  +  L++   ++ T
Sbjct: 85  VTENAIEEKVMDRAAQKLRLDQLVIQQGRQAT 116


>gi|158120894|gb|ABW16947.1| helicase DNA-binding protein [Caenorhabditis remanei]
          Length = 167

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW--NEGKIPLLFA 114
           +   +++       L  L++                  D     I  +        +   
Sbjct: 30  DGHKVLIFSQMVKVLDLLEEFLITMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLL 89

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   W+ +   Q   R       + G K+ V VY LI  N
Sbjct: 90  CTRAGGLGINLT-AADTVIIFDSDWNPQNDLQAQARC-----HRIGQKKLVKVYRLITSN 143

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T +  +  +   K  +   +L +
Sbjct: 144 TYEREMFDKASLKLGLDKAVLQS 166


>gi|326924514|ref|XP_003208472.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
            [Meleagris gallopavo]
          Length = 2479

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 26/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIEK 65
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1991 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2044

Query: 66   ANAAPI----IVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            AN           Y      F + D  RL  +    ++  K      +    +  L    
Sbjct: 2045 ANREKTDKEKPPIYKGEGKWFRNIDYYRLDGST-TAQSRKKWAEEFNDETNVRGRLFIIS 2103

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T
Sbjct: 2104 TKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQSKPVFVYRFLAQGT 2157

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2158 MEDKIYDRQVTKQSLSFRVVD 2178


>gi|242791161|ref|XP_002481703.1| chromatin remodeling complex subunit (Chd3), putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218718291|gb|EED17711.1| chromatin remodeling complex subunit (Chd3), putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1597

 Score = 79.2 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK--IPLLFAH 115
               +++   F  +L  ++                    +    I  +N            
Sbjct: 1069 GHRVLLFSQFLDNLDIVEDFLDGLGLFYCRLDGSMGAHEKQKKIDAFNAPDSTYFAFLLS 1128

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    + ++     ++  +  Q + R       + G ++ V V+ L+ + +
Sbjct: 1129 TRSGGVGINL-ATADTVIIMDPDFNPHQDIQALSR-----AHRIGQQKKVLVFQLMTRES 1182

Query: 176  IDELVLQRLRTKSTIQDLLLNAL 198
             +E ++Q  + K  +  +L+  +
Sbjct: 1183 AEEKIMQIGKKKMALDHVLIEKM 1205


>gi|324500492|gb|ADY40232.1| Transcriptional regulator ATRX [Ascaris suum]
          Length = 1681

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 36/211 (17%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R  Y +         N  S + K + L       +E      V  + I++L +I      
Sbjct: 1243 RGWYAETGLVTEADENDFSLSNKLMLLVQIVKKCEEIGDKILVFSQSIESLTLI------ 1296

Query: 69   APIIVAYHFNSDL------ARLQKA-----FPQGRTL---------DKDPCTIQEWNEGK 108
               ++ Y  + DL        ++ A     + +GR            K      ++N   
Sbjct: 1297 -KRMLHYMDSHDLWFSDGHEAIKSANETWGWIEGRDYMVIDGQVQSGKRQEVQTKFNNPN 1355

Query: 109  I---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 L+     +   G N+    N ++ F   W+     Q + R+      + G  + V
Sbjct: 1356 NLRARLMLISTRAGSLGTNM-VAANRVIIFDACWNPSHDTQSLFRV-----YRFGQTKPV 1409

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1410 YIYRFIAQGTMEERIYKRQVTKESTALRVID 1440


>gi|147776792|emb|CAN74674.1| hypothetical protein VITISV_020205 [Vitis vinifera]
          Length = 278

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRT 93
           E ++W E        LE+    +  +  I+   + + L  LQ                  
Sbjct: 126 ENRNWVESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLDGTLN 185

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    I+++  E  I +L     + G G+NL    +  V    WW+    +Q + RI 
Sbjct: 186 QQQREKVIKQFSEESHILVLLMSLKAGGVGINLMAASHAFVL-DPWWNPAVEEQAVMRI- 243

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                + G  + V +   IA+ TI    L
Sbjct: 244 ----HRIGQTKRVMIKRFIAKGTIQRSAL 268


>gi|320034532|gb|EFW16476.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 2050

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
            H  +   L+ II+++      +++  H    L  ++      R           +     
Sbjct: 1366 HSHRAAMLDQIIKQSINAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITNRQS 1425

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N+   P  +      + G GLN+  G N +V F   ++    +Q + R       
Sbjct: 1426 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPTWEEQAVGR-----AY 1479

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ VFVY  IA  T ++++  +   K+ +   +++
Sbjct: 1480 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD 1518


>gi|303318787|ref|XP_003069393.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240109079|gb|EER27248.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 2054

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
            H  +   L+ II+++      +++  H    L  ++      R           +     
Sbjct: 1370 HSHRAAMLDQIIKQSINAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITNRQS 1429

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N+   P  +      + G GLN+  G N +V F   ++    +Q + R       
Sbjct: 1430 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPTWEEQAVGR-----AY 1483

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G ++ VFVY  IA  T ++++  +   K+ +   +++
Sbjct: 1484 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD 1522


>gi|116202151|ref|XP_001226887.1| hypothetical protein CHGG_08960 [Chaetomium globosum CBS 148.51]
 gi|88177478|gb|EAQ84946.1| hypothetical protein CHGG_08960 [Chaetomium globosum CBS 148.51]
          Length = 890

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 50  EVHDEKIKALEVII-EKANAAPIIVAYHFNSDLA------RLQKAFPQGRTLDKDPCTIQ 102
            +   KI+ L  I+ ++A+    IV   F S L       R Q      R   K P   +
Sbjct: 666 VMTSAKIRELLSILRKEASVHKFIVFSQFTSMLDLVEPFLRAQPGLKAVRYDGKMPNDAR 725

Query: 103 E------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           E        +    +L         GLNL      +V    +W+    +Q I+R+     
Sbjct: 726 EAALRALRTDPHTRILLCSLKCGSLGLNLT-AATRVVIVEPFWNPFVEEQAIDRV----- 779

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +      V VY L   +T++  +L     K  + +  L    ++
Sbjct: 780 HRLTQTVDVVVYKLTVADTVEARILALQDKKRRLAEATLEGGSRK 824


>gi|197387226|ref|NP_001127992.1| helicase ARIP4 [Rattus norvegicus]
 gi|149018631|gb|EDL77272.1| Rad54 like 2 (S. cerevisiae) (predicted) [Rattus norvegicus]
          Length = 1299

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------------------- 86
           +  K+  L  +IE++      I+V     S LA +++                       
Sbjct: 718 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVR 777

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 778 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 836

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 837 WNPCHDAQAV-----CRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 891


>gi|149055561|gb|EDM07145.1| alpha thalassemia/mental retardation syndrome X-linked homolog
           (human) [Rattus norvegicus]
          Length = 883

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 33/205 (16%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
           ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 394 KDFVTDADAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 447

Query: 65  ------KANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCT-IQEWNEGKI---PL 111
                 +    P+I    +  +   L  +      G T  +      +E+N+       L
Sbjct: 448 ASREKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 503

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 504 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 557

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           AQ T+++ +  R  TK ++   +++
Sbjct: 558 AQGTMEDKIYDRQVTKQSLSFRVVD 582


>gi|259479572|tpe|CBF69917.1| TPA: single-stranded DNA-dependent ATPase (Eurofung) [Aspergillus
            nidulans FGSC A4]
          Length = 1170

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 21   EAFNSASKTVKCLQLANG----------AVYYDEEKHWKEVHDEKIKALEV---IIEKAN 67
             A  +A      ++ A              Y       K +    +   E    + E   
Sbjct: 954  SAITAAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTKALLSHLLATAEESAKLPEGEA 1013

Query: 68   AAPIIVAYHFNSDLARLQ-KAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAH 115
                +V   + S L  ++     QG T          L      +  + +     +L A 
Sbjct: 1014 PIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRDDNNTTILLAT 1073

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    ++ +     ++     Q I+R+      + G  R V     I +++
Sbjct: 1074 IGAGGVGLNLTAASHVYIM-EPQYNPAAVAQAIDRV-----HRLGQTREVTTVQFIMKDS 1127

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I+E + +  + K  + D+ LN  K +   V
Sbjct: 1128 IEEKIAELAKKKQQLADMSLNRGKLDKAEV 1157


>gi|221057618|ref|XP_002261317.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|194247322|emb|CAQ40722.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 875

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
            K+KA++  I          ++  H    +  + K   + +           +DK    I
Sbjct: 614 AKVKAIKEYITYLIDADIKFLLFCHHKLVMDEIDKFLTEKKCMFIRIDGLTPIDKRELYI 673

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + + N+ KI +      +CG GLNL    N +VF  L+W   +  Q  +R       + G
Sbjct: 674 KSFQNDDKIKIALLSLTACGLGLNLT-AANTVVFGELYWVPGQIIQAEDR-----AHRIG 727

Query: 161 FKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               V  ++YLIAQ TIDE V + +  K       LN ++
Sbjct: 728 TTHEVINIHYLIAQKTIDETVWRIINRKWNTLTTALNGME 767


>gi|121713876|ref|XP_001274549.1| DNA excision repair protein (Rad5), putative [Aspergillus clavatus
            NRRL 1]
 gi|119402702|gb|EAW13123.1| DNA excision repair protein (Rad5), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1252

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1149 VLLISLRAGGVGLNLTVASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVAVTRF 1202

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+  +LQ    K  I   L
Sbjct: 1203 IVKDSIEGRMLQVQERKMNIAGSL 1226


>gi|328860513|gb|EGG09619.1| hypothetical protein MELLADRAFT_95838 [Melampsora larici-populina
            98AG31]
          Length = 1765

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD---------------KDPCTIQEWNEGKIP-- 110
               I++   F   L  + + F +G                        I  +N       
Sbjct: 1100 GHRILIFSQFTIFLD-IMERFLEGEERPYLRLSTLQDGTTSQLDRQTRIDAFNRPNSNHN 1158

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    + ++     ++     Q I R       + G K+ V V+ L
Sbjct: 1159 LFLLSTRAGGAGINL-ATADTVIILDPDYNPHNDLQAISR-----AHRFGQKKPVNVFKL 1212

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +   + +E ++Q  + K  +  L++  + +E
Sbjct: 1213 MTSASAEERIVQMGKRKLVLDHLVIQKVSEE 1243


>gi|146165350|ref|XP_001014826.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|146145551|gb|EAR94494.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1612

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 36/226 (15%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-----------YDEEKHWK 49
            +K Y   +     D + +N   F+  +  +    + N                D+ +   
Sbjct: 930  VKNYDNLK---LLDAKSKNFSKFSLLNILMSLRLVCNHPSLFLYKKKYLIPKKDKFQEEF 986

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDK 96
                 K+K LE +I K       +++   F   L  + + F                +D+
Sbjct: 987  VDCSNKLKFLERMIPKLLQQNHKMLIFSQFTMMLDIMGEFFNFKGWAFERLDGTTSVIDR 1046

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               TI  +N    K  +      + G G+NL    + + F    ++     Q I R    
Sbjct: 1047 Q-KTIDSFNSKDSKAKIFLLSTRAGGLGINLT-SADTIFFTDSDFNPYRDVQAISR---- 1100

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G +  V VY L+++ + +E +++    K  ++ +++N + K
Sbjct: 1101 -AYRMGQESKVKVYRLVSKYSAEERIIEIATRKLLLESIIINPINK 1145


>gi|167517741|ref|XP_001743211.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778310|gb|EDQ91925.1| predicted protein [Monosiga brevicollis MX1]
          Length = 689

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 55  KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAF-PQGRTLDK---------DPCTIQ 102
           K+  L  ++ +       +++  +    L  +Q A   QGRT  +             + 
Sbjct: 502 KLAILMQLLARWEKEQLSVVIFSYTTRLLNIIQDALSLQGRTPLRIDGQVSARDRHAVVA 561

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++      +L     + G G+NLQ    +++     W+     Q        R  + G +
Sbjct: 562 KFQARDERILLVSTHAGGEGINLQAASKVVI-VDPCWNPARDLQA-----QDRAYRLGTE 615

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V V  L+   T++ELV  R   K  +  ++
Sbjct: 616 HDVEVLRLVTAGTLEELVYARQVYKLQLARMV 647


>gi|134118954|ref|XP_771980.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254584|gb|EAL17333.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1060

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 96  KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  +   E    ++     + G GLNL    N +V F   W +            
Sbjct: 717 ERQEMIDRFQDLERDHFIMLISTRAGGVGLNLT-AANKVVIFDPSWTM------------ 763

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 764 DRAFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 804


>gi|156554595|ref|XP_001604594.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 1968

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I E+N   K+ L      +   G+NL  G N  + F   W+     Q +      
Sbjct: 1028 EREKLINEFNVNPKVHLFLVSTRAGSLGINL-VGANRAIVFDASWNPCHDTQAV-----C 1081

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G ++  +VY L+  N ++  +  R  +K  + D +++
Sbjct: 1082 RVYRYGQQKNCYVYRLVTDNCLERKIYDRQISKQGMADRVVD 1123


>gi|123506672|ref|XP_001329249.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121912202|gb|EAY17026.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 871

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQ 102
           K++ L+VI++K        ++   + S +  L+                 T  +    I+
Sbjct: 620 KLQLLDVILQKLITTGHRFLIYSQWTSMMDLLEIYLNWRKIETSRIDGSVTTSERSRLIK 679

Query: 103 EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +     P+  +     S   GLNLQ   + ++ F   ++     Q   R+      + G
Sbjct: 680 SFVVPGSPVKGMLLSTRSSAFGLNLQ-AADTVILFDSDYNPFIELQASARV-----HRMG 733

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +V +  L+  +T +E +L+  R K  +   ++ A
Sbjct: 734 QTNSVVIVRLMTNDTGEEHILRIARRKFKMGQQIITA 770


>gi|118576973|ref|YP_876716.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
 gi|118195494|gb|ABK78412.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
          Length = 574

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 91  GRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G   D+     I  + EG+  L+ A   +   G+NL      ++F  L W    H+Q  +
Sbjct: 443 GGQSDRSRQDQIDSFQEGRSKLMIAGLRAGNVGINLSR-ARYVIFAELDWSPAIHRQAED 501

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G K  VF YYLI   T+DE V   L  KS   D +++
Sbjct: 502 RL-----HRIGQKNTVFAYYLIGNGTLDEHVANILVDKSYEIDSIMD 543


>gi|47209275|emb|CAF89705.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2968

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 90   QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             GR   +     I  ++       +      + G G+NL    +  + F   W+ +   Q
Sbjct: 1396 DGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQ 1454

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               R       + G  +AV +Y LI +N+ +  +  +   K  +   +L ++
Sbjct: 1455 AQARC-----HRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1501


>gi|324500516|gb|ADY40241.1| Transcriptional regulator ATRX [Ascaris suum]
          Length = 1617

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 36/211 (17%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R  Y +         N  S + K + L       +E      V  + I++L +I      
Sbjct: 1179 RGWYAETGLVTEADENDFSLSNKLMLLVQIVKKCEEIGDKILVFSQSIESLTLI------ 1232

Query: 69   APIIVAYHFNSDL------ARLQKA-----FPQGRTL---------DKDPCTIQEWNEGK 108
               ++ Y  + DL        ++ A     + +GR            K      ++N   
Sbjct: 1233 -KRMLHYMDSHDLWFSDGHEAIKSANETWGWIEGRDYMVIDGQVQSGKRQEVQTKFNNPN 1291

Query: 109  I---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 L+     +   G N+    N ++ F   W+     Q + R+      + G  + V
Sbjct: 1292 NLRARLMLISTRAGSLGTNM-VAANRVIIFDACWNPSHDTQSLFRV-----YRFGQTKPV 1345

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1346 YIYRFIAQGTMEERIYKRQVTKESTALRVID 1376


>gi|270010403|gb|EFA06851.1| hypothetical protein TcasGA2_TC009794 [Tribolium castaneum]
          Length = 1540

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 42/192 (21%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH-------FNSDLARLQKAFPQG 91
            Y D ++     H  K+  L  I+++       ++V              L R+  A   G
Sbjct: 1133 YCDGDELNNIAHSSKLFLLFEILKECEQIGDKVLVFSQSLYSLNIIEYFLGRIHDATQAG 1192

Query: 92   RTL------------------------DKDPCTIQEWNEG---KIPLLFAHPASCGHGLN 124
             T                         D      + +N     +  L      + G G+N
Sbjct: 1193 ETDSVGGYSGSWCVGLDYFRLDGSSSCDSRSMWCRTFNNPTNTRARLFLISTKAGGLGIN 1252

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    N ++ F + W+     Q I      R  + G  +  ++Y  +   T++  + +R 
Sbjct: 1253 L-VAANRVIIFDVSWNPSHDIQSI-----YRVYRFGQTKPCYIYRFVTLGTMEMKIYERQ 1306

Query: 185  RTKSTIQDLLLN 196
             TK  I   +++
Sbjct: 1307 VTKQAISKRVID 1318


>gi|70954393|ref|XP_746245.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56526791|emb|CAH81164.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 1024

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 47/236 (19%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW---KEVHDEKIKA 58
            Y + + + +  +     +   +  +  ++  ++ N    +               K + 
Sbjct: 637 LYKQIEEKTFKQVNSDGTVNTKSFQNTIMQLRKIVNHPFLFTNNYDINDCIIKSSGKFEV 696

Query: 59  LEVIIEKA--NAAPIIVAYHFNS---------DLARLQKAFPQGRT-LDKDPCTIQEWNE 106
           L+ +I K       I++               +L R +     G   L      I  +NE
Sbjct: 697 LDRMIPKLIKFKHKILLFCQMTRVMDILCDYFELRRYKYHRLDGSVSLSDRRQIIDNFNE 756

Query: 107 GK-------------------------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            K                           +      S G GLNLQ   + ++ F   ++ 
Sbjct: 757 PKSVNNCKEIDQNDINDLSNQELDTDEAMIFILSTRSGGLGLNLQ-AADTVIIFDSDFNP 815

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q + R       + G K  V V+  I  ++++ELV QR + K  I D ++ A
Sbjct: 816 HQDIQAMCRC-----HRIGQKNVVKVFRFITLSSVEELVFQRAKDKLNINDKVIQA 866


>gi|159112449|ref|XP_001706453.1| DNA repair and recombination protein Rhp26p [Giardia lamblia ATCC
           50803]
 gi|157434550|gb|EDO78779.1| DNA repair and recombination protein Rhp26p [Giardia lamblia ATCC
           50803]
          Length = 930

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
            +  I+EKA    ++    F +   R+    P    +D  P  I ++  + +I L     
Sbjct: 569 MMLNIVEKA----LLETASFKNAYLRMDGNIP----VDARPALISKFSTDPQIRLFLLTT 620

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GLNL    N +   +  W+     Q +ER       +    + V VY +    TI
Sbjct: 621 RVGGLGLNLT-AANHVFLLNPNWNPTIDDQSVERCW-----RITQTKKVIVYKVFTGGTI 674

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +  R   K  +   +L+
Sbjct: 675 EEKIFNRQIYKRLLVSRVLD 694


>gi|313238286|emb|CBY13372.1| unnamed protein product [Oikopleura dioica]
          Length = 1487

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 14/125 (11%)

Query: 76   HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNI 131
             + + D  R+        T  K    I+ +N+ + P   L      + G G NL  G N 
Sbjct: 1137 WYKNIDYFRI----DGSVTAAKRTTFIESFNDLEDPRARLFLVSTKAGGIGTNL-VGANR 1191

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++ F   W+     Q + R+      + G  ++VFVY  +   T++E + +R   KS++ 
Sbjct: 1192 VIIFDSSWNPAHDVQSLFRV-----YRFGQTKSVFVYRFVGHGTMEEKIYERQVNKSSLG 1246

Query: 192  DLLLN 196
              +++
Sbjct: 1247 LRVVD 1251


>gi|56384753|gb|AAQ24521.2| Rad26 [Giardia intestinalis]
          Length = 925

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
            +  I+EKA    ++    F +   R+    P    +D  P  I ++  + +I L     
Sbjct: 564 MMLNIVEKA----LLETASFKNAYLRMDGNIP----VDARPALISKFSTDPQIRLFLLTT 615

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GLNL    N +   +  W+     Q +ER       +    + V VY +    TI
Sbjct: 616 RVGGLGLNLT-AANHVFLLNPNWNPTIDDQSVERCW-----RITQTKKVIVYKVFTGGTI 669

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +  R   K  +   +L+
Sbjct: 670 EEKIFNRQIYKRLLVSRVLD 689


>gi|71409960|ref|XP_807298.1| DNA excision repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871269|gb|EAN85447.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1114

 Score = 78.8 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KAN 67
           E + D + +  +  +  +K  +   ++         +        K++ L+ ++   +  
Sbjct: 760 EYFDDNEEDETDGVDGKTKRRRGSHMS-----LRSNRLVNYSGSGKLQTLQKLLTVWQRG 814

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPA 117
              ++V       L  ++    Q                    +  +NE    +      
Sbjct: 815 GQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQELMDRFNEDDSIVAALLTT 874

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G       G N +V F   W+    +Q  ER       + G  R V VY LIA  T++
Sbjct: 875 RVGGVGVNLVGANRVVLFDPDWNPVTDEQARERAW-----RIGQTRDVGVYRLIASGTVE 929

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L+R   K+ + + +L
Sbjct: 930 EAILRRQLAKTYVTEKVL 947


>gi|313895657|ref|ZP_07829213.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975783|gb|EFR41242.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 403

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y   +RE Y +L    +   N  +K ++  QL  G +  D++     +   K+ AL 
Sbjct: 272 VKVYKNLERESYAELACGEVSTVNVLTKLLRLSQLTGGFI-TDDDGSAHPISTAKLDALS 330

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            II+   ++   +++   F ++L  +Q    +
Sbjct: 331 DIIDTVMSDGKKLVIMARFVAELDAIQDLLDK 362


>gi|149412153|ref|XP_001506490.1| PREDICTED: similar to hCG1997495 [Ornithorhynchus anatinus]
          Length = 1466

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR---TLDKDPCTIQEW-- 104
           +  K+  L  +IE++      I+V     S L+ +++   +       D D   IQ W  
Sbjct: 715 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLSVIEEFLAKRSMPCLPDSDGQGIQNWVR 774

Query: 105 --------------------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                                     +   + L      +   G+NL  G N +V F   
Sbjct: 775 NHSYYRLDGSTSASERERLINQFNDPSSSSVWLFLLSTRAGCLGVNL-IGANRVVVFDAS 833

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 834 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVSDFTLEKKIYDRQISKQGMSDRVVDDL 888


>gi|189205653|ref|XP_001939161.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975254|gb|EDU41880.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1192

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 50   EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
                 K  A++  I    ++     IIV   F + +  L++ F              +L 
Sbjct: 1006 VFPSAKTIAVKSQILNWQKEKADVKIIVYTQFLAMIRILKRVFATEGWTCEEYHGKMSLK 1065

Query: 96   KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K    I  + +   P+ L A     G GLNL    + ++    WW+    QQ        
Sbjct: 1066 KRDDAIAAFADTAGPVILLASLRCGGLGLNLTM-ASKVIMIDPWWNSASEQQA-----FC 1119

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G     F+  L  +NT+DE ++Q    K    D+++ 
Sbjct: 1120 RVFRIGQNEKTFMSRLCVKNTVDEHLVQMQERKQEEIDVVME 1161


>gi|329764968|ref|ZP_08256555.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138505|gb|EGG42754.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 574

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +   G++       I ++ +G+  L+ A   +   G+NL      ++F  L W    H+Q
Sbjct: 445 SIIGGQSDKMRQEAIDKFQKGESKLMIAGLRAGNVGINLTR-AKYVIFAELDWSPAIHRQ 503

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +R+      + G K  VF YYLI   T+D+ V   L  KS   D +++
Sbjct: 504 AEDRL-----HRIGQKNTVFAYYLIGNGTLDDHVANILVDKSYEIDSIMD 548


>gi|307566197|ref|ZP_07628648.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345090|gb|EFN90476.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
          Length = 1090

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 15/133 (11%)

Query: 72  IVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           +V   ++ D++ +    P     Q + L +        N     ++   P + G GLN+ 
Sbjct: 794 VVFRRYDLDISIINGETPATAKVQSQKLSRQQTVDNFQNAEGFNIIIMSPLAAGMGLNIT 853

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY--LIAQN--TIDELVLQ 182
            G N ++ +S +W+  + QQ  +R       + G K+ V VYY   ++++  T D ++  
Sbjct: 854 -GANNVIHYSRFWNPAKEQQATDR-----AYRIGQKKDVNVYYPMSVSKDFRTFDVIIDA 907

Query: 183 RLRTKSTIQDLLL 195
            L  K+ + D  L
Sbjct: 908 LLAKKAELADATL 920


>gi|302834136|ref|XP_002948631.1| hypothetical protein VOLCADRAFT_58399 [Volvox carteri f.
           nagariensis]
 gi|300266318|gb|EFJ50506.1| hypothetical protein VOLCADRAFT_58399 [Volvox carteri f.
           nagariensis]
          Length = 584

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+NL    N +V   LWW+    +Q I+R       + G  R V V  +   
Sbjct: 482 VSLKAAALGVNLTV-ANHVVLMDLWWNPTTEEQAIDR-----AHRIGQTRTVHVTRITIA 535

Query: 174 NTIDELVLQRLRTKSTI 190
            ++++ +L+  + K  +
Sbjct: 536 GSVEDRILELQQVKREL 552


>gi|119481535|ref|XP_001260796.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119408950|gb|EAW18899.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1194

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 50   EVHDEKIKAL-EVIIEKANAAPII---------VAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL   + E A  +  +         V   + S L  ++ A            
Sbjct: 1010 EGPHTKTKALLAHLAESAEESKRLNAEPPIKSVVFSAWTSHLDLIEIALKDRGMTGFTRL 1069

Query: 93   ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +L      ++++   G   +L A   + G GLNL     + +     ++     Q 
Sbjct: 1070 DGTMSLAARNRALEDFHTNGNTTILLATIGAGGVGLNLTSASKVYIM-EPQYNPAAVAQA 1128

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I+R+      + G  R V     I + +I+E + +  + K  + D+ +N  K
Sbjct: 1129 IDRV-----HRLGQTREVTTVQFIMKGSIEEKIFELAKKKQQLADMSMNRGK 1175


>gi|123427014|ref|XP_001307162.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121888775|gb|EAX94232.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1535

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 19/154 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRT-LDKDPCTIQE 103
           + +  +  I +K N   +++       L  L +             G+   D     I  
Sbjct: 769 QFLDLILPIFKKQN-RSVLIFSQRIKVLQLLAEYCQLRKYTYVMLDGQLSADDKKTAIDS 827

Query: 104 W--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  +   + +      S   GLNL      ++ F   W+     Q + R       + G 
Sbjct: 828 FVSDNSDVFIFLISTKSGAEGLNLTKASVTII-FDPDWNPNNDLQALGRC-----HRIGQ 881

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V  LI   T +  +  R + K  + D +L
Sbjct: 882 TKRVLVLRLITFGTYEHTMYTRAQKKLKLWDAVL 915


>gi|324998247|ref|ZP_08119359.1| helicase domain-containing protein [Pseudonocardia sp. P1]
          Length = 688

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       I  + N+  + +      + G G+NLQ   +I V   L W   E  Q I+R
Sbjct: 555 QTAAARQRNIDAFTNDPDVAVAVCSLTAAGVGINLQVASDI-VLAELSWTAAEQTQAIDR 613

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G    V  + +IA  TID  + + +  K+ + D  L+ ++ +
Sbjct: 614 C-----HRIGQTAPVTAWRVIAAQTIDARIAELIDGKAGLADQALDGIEDD 659


>gi|238917469|ref|YP_002930986.1| hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
 gi|238872829|gb|ACR72539.1| Hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
          Length = 69

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 37 NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
          NGA+Y D      E HD K+ ALE IIE +N  P++VAY F  DL+R+++ F     
Sbjct: 14 NGAIYSD-TGEIIEFHDRKLDALEDIIESSNGKPVLVAYWFKHDLSRIKERFDVREI 69


>gi|115472213|ref|NP_001059705.1| Os07g0497000 [Oryza sativa Japonica Group]
 gi|113611241|dbj|BAF21619.1| Os07g0497000 [Oryza sativa Japonica Group]
          Length = 622

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
              K+  L  +++  +     +++       L  L+            +      ++ + 
Sbjct: 288 ASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVAER 347

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 348 QAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 401

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G    + VY L+ + +++E +L   + K  +  L +N
Sbjct: 402 HRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVN 441


>gi|315505011|ref|YP_004083898.1| snf2-related protein [Micromonospora sp. L5]
 gi|315411630|gb|ADU09747.1| SNF2-related protein [Micromonospora sp. L5]
          Length = 621

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 22/195 (11%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + E + ++      A+  A +  K   +   AV  +E          K++ L  ++++A
Sbjct: 383 IEVEDWVEMGRAEARAYRQAVQDRKFASMRRAAVVTNESAVP-----AKVERLREVVQEA 437

Query: 67  NAA--PIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGK-IPLLFAH 115
                 ++V  +F   L R++ +     T               + E++      +L + 
Sbjct: 438 ADNQWKVVVFSYFLEVLDRVRASLHDSPTFLLTGAIAPAARQQVVDEFSALDGHAVLISQ 497

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G GLNL    +++V           +Q I R       + G  R V V+ L+A+NT
Sbjct: 498 ITVGGVGLNL-PAASVVVLTEPQLTPAAEEQAIRRC-----YRMGQTRGVRVHRLLARNT 551

Query: 176 IDELVLQRLRTKSTI 190
           +D+ +L+ L  K+ +
Sbjct: 552 VDQRLLEMLGRKTAL 566


>gi|168012254|ref|XP_001758817.1| SNF2 family DNA-dependent ATPase domain-containing protein
            [Physcomitrella patens subsp. patens]
 gi|162689954|gb|EDQ76323.1| SNF2 family DNA-dependent ATPase domain-containing protein
            [Physcomitrella patens subsp. patens]
          Length = 1437

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 95   DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N+     +  +     +   G+NL    N ++ F   W+     Q     
Sbjct: 1118 KSRQELVERFNDPDNTSVQCVLISTRAGSLGINL-PAANRVIIFDGSWNPTHDLQA---- 1172

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K+ V+ Y L+A  T++E +  R   K  +   +L+
Sbjct: 1173 -LFRAWRFGQKKNVYAYRLLASGTMEEKIYNRQVAKEGLAARVLD 1216


>gi|154412505|ref|XP_001579285.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121913490|gb|EAY18299.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1421

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLD-KDPCT 100
             K   L+ I+ K       +++   F   L  L++             G+  D +    
Sbjct: 743 SAKFAWLDRILTKLKEEGHRVLIFSQFIKLLRLLKEYCTIKGYSHELLTGQMGDVEKNAA 802

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  + +      +      +   GLNL    +  + F   W+ +   Q   R+      +
Sbjct: 803 VSRFADKDTSSFVFLISTRAGSEGLNLTI-ADTAIIFDPDWNPQNDLQAQARV-----HR 856

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V +  LI   T +  +  R + K  + + +L  
Sbjct: 857 IGQTQKVDIIRLITYKTYEHEMFVRAQRKLELWERILEG 895


>gi|303285416|ref|XP_003061998.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456409|gb|EEH53710.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2365

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 91   GRTLDKDPC-TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            GRT+  +    I  +N       L+     + G GLNL    + +V +   ++    QQ 
Sbjct: 1165 GRTMGAERQRVIDGFNAEGSHQFLMLVSTRAGGLGLNL-ATADTIVLYDPEFNPFIEQQA 1223

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  +R  + G KR V VY L+   +++E ++Q+ + K  I+ L++
Sbjct: 1224 -----QSRAHRMGQKREVAVYQLVTAGSVEERIVQKAKAKLAIERLVV 1266


>gi|52786371|ref|YP_092200.1| YqhH [Bacillus licheniformis ATCC 14580]
 gi|52348873|gb|AAU41507.1| YqhH [Bacillus licheniformis ATCC 14580]
          Length = 561

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEK 65
            +RE     +   +   N   +  +   + +  V +   +   EV  + K   +  +I++
Sbjct: 313 LERECCSSREAVYMTLKNMLDRKDREAPVISEPVIHHLIEKVNEVAQNSKALKVVELIQE 372

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
            +   +I+   + +    LQ    Q         G         +++   GK+ +L A  
Sbjct: 373 LDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIA-T 430

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V++Y +  ++T+
Sbjct: 431 EAGGEGINLQF-CNKIINYDLPWNPMRLEQRIGRI-----HRLGQERDVYIYNMATKHTV 484

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +L+ L  K  + + ++
Sbjct: 485 EEHILKLLYEKIHLFEKVV 503


>gi|302901999|ref|XP_003048558.1| hypothetical protein NECHADRAFT_47402 [Nectria haematococca mpVI
           77-13-4]
 gi|256729491|gb|EEU42845.1| hypothetical protein NECHADRAFT_47402 [Nectria haematococca mpVI
           77-13-4]
          Length = 455

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 52  HDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEG-K 108
           H  K+ A+ E I   +               A++      GRT   +    ++ + E  +
Sbjct: 296 HSTKLSAVVENIARSSVET--------KQSAAKIDHVLIDGRTNYSERSRRLKAFKEDSR 347

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +L     +   GLNL    N++      W+     Q + R       + G ++AV +Y
Sbjct: 348 ITVLVMSIETGAVGLNLTV-ANVVHIVEPQWNPSVEAQAVAR-----ALRMGQQKAVTIY 401

Query: 169 YLIAQNTIDELVLQRLRTKSTIQ 191
             I + T++E +++    K  + 
Sbjct: 402 RYIMKGTVEERIIELQERKKKLA 424


>gi|326332827|ref|ZP_08199085.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
 gi|325949385|gb|EGD41467.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
          Length = 735

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 71  IIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYG 128
           ++       +   ++ +  +G +T       I E+ N+ ++ ++     + G G+NLQ  
Sbjct: 576 VMDTAQKLFEERGIRYSTIRGDQTSKAREKAIDEFMNDPEVEIIVCSLTAAGVGVNLQAA 635

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N LV   L W   E  Q I+R+      + G    V  + +IA  TID  + + + +K+
Sbjct: 636 SN-LVLAELSWTDAEQTQAIDRV-----HRIGQTEPVTAWRIIASQTIDTRIAELIDSKA 689

Query: 189 TIQDLLLNA 197
            +    L+ 
Sbjct: 690 GLAARALDG 698


>gi|242208298|ref|XP_002470000.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730900|gb|EED84750.1| predicted protein [Postia placenta Mad-698-R]
          Length = 955

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 101 IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF------FSLWWDLEEHQQMIERIG 152
           +Q +N     I +      + G GLNLQ    +++       F   W+     Q      
Sbjct: 676 VQMFNAPDSDIRVFILSTRAGGLGLNLQTADTVIMNNLIDDSFDSDWNPHADLQA----- 730

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  + V +   I + +++E + QR R K  I D ++ A +
Sbjct: 731 QDRAHRIGQTKVVRILRFITEKSVEESMFQRARYKLDIDDKVIQAGR 777


>gi|52080994|ref|YP_079785.1| DEAD/DEAH box helicase YqhH [Bacillus licheniformis ATCC 14580]
 gi|319645048|ref|ZP_07999281.1| YqhH protein [Bacillus sp. BT1B_CT2]
 gi|52004205|gb|AAU24147.1| DEAD/DEAH box helicase YqhH [Bacillus licheniformis ATCC 14580]
 gi|317392857|gb|EFV73651.1| YqhH protein [Bacillus sp. BT1B_CT2]
          Length = 559

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEK 65
            +RE     +   +   N   +  +   + +  V +   +   EV  + K   +  +I++
Sbjct: 311 LERECCSSREAVYMTLKNMLDRKDREAPVISEPVIHHLIEKVNEVAQNSKALKVVELIQE 370

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
            +   +I+   + +    LQ    Q         G         +++   GK+ +L A  
Sbjct: 371 LDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIA-T 428

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V++Y +  ++T+
Sbjct: 429 EAGGEGINLQF-CNKIINYDLPWNPMRLEQRIGRI-----HRLGQERDVYIYNMATKHTV 482

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +L+ L  K  + + ++
Sbjct: 483 EEHILKLLYEKIHLFEKVV 501


>gi|149537776|ref|XP_001520060.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
           partial [Ornithorhynchus anatinus]
          Length = 1799

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
           +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 743 DGSSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 802

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 803 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQ---- 857

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           + +      G  + V +Y  + Q +++E + Q    
Sbjct: 858 VSLNHTHSIGQNKNVMIYRFLTQASVEERITQIQDN 893


>gi|154270291|ref|XP_001536001.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410015|gb|EDN05403.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1687

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
            W      + +  + IIE+  A    +++  H    L  L+    Q +           + 
Sbjct: 1242 WSLELSHRAQVADQIIERSIAAGDKVLLFSHSIPTLNYLELVLKQAKRSYSRLDGKTPIA 1301

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  + +N G    +      + G GLN+  G N ++ F   ++    +Q + R    
Sbjct: 1302 TRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR---- 1356

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1357 -AYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD 1397


>gi|328848776|gb|EGF97974.1| hypothetical protein MELLADRAFT_84130 [Melampsora larici-populina
           98AG31]
          Length = 615

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +       ++   + S +  +           ++      T ++         +  +   
Sbjct: 442 KSHGGGKSVIYTQWKSFIDWIIMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAF 501

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    + +      W+ +  QQ ++R+      + G  + V V++++ 
Sbjct: 502 VVSIEAGGVGLNMTC-ADEVYLMDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVT 555

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             +I++ +    + K+ +   ++
Sbjct: 556 GQSIEQHLYNVQKRKAALAKRVI 578


>gi|170592673|ref|XP_001901089.1| DNA excision repair protein ERCC-6 [Brugia malayi]
 gi|158591156|gb|EDP29769.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
          Length = 147

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N G I +        G G+NL    N +V F   W+     Q  ER         G +R
Sbjct: 9   QNNG-IFIFLLTTRVSGLGINLT-AANRVVIFDPDWNPSTDIQARERAWP-----IGQER 61

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           AV +Y L+   TI+E +      K  + +  L+
Sbjct: 62  AVTIYRLLTGGTIEEKIYHTXIFKVFLSNRTLD 94


>gi|30686918|ref|NP_850847.1| CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding /
           DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
 gi|332005205|gb|AED92588.1| chromatin remodeling factor17 [Arabidopsis thaliana]
          Length = 1072

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N   +  + L +A                  G  Y   +   
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDP 98
                  +    +   K   + +++       L  L         Q     G T  D+  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    +N I+  V++R   K  +  L++ 
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645


>gi|225557866|gb|EEH06151.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1790

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
            W      + +  + IIE+  A    +++  H    L  L+    Q +           + 
Sbjct: 1333 WSLELSHRAQVADQIIERSIAAGDKVLLFSHSIPTLNYLELVLKQAKRSYSRLDGKTPIA 1392

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  + +N G    +      + G GLN+  G N ++ F   ++    +Q + R    
Sbjct: 1393 TRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR---- 1447

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1448 -AYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD 1488


>gi|224098380|ref|XP_002196003.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            [Taeniopygia guttata]
          Length = 2434

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 26/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIEK 65
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1947 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2000

Query: 66   ANAAPI----IVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            AN           Y      F + D  RL  +    ++  K      +    +  L    
Sbjct: 2001 ANREKSERDQPPIYKGEGKWFRNIDYYRLDGST-TAQSRKKWAEEFNDETNVRGRLFIIS 2059

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T
Sbjct: 2060 TKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQNKPVFVYRFLAQGT 2113

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2114 MEDKIYDRQVTKQSLSFRVVD 2134


>gi|30686915|ref|NP_568365.2| CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding /
           DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
 gi|332005204|gb|AED92587.1| chromatin remodeling factor17 [Arabidopsis thaliana]
          Length = 1069

 Score = 78.4 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N   +  + L +A                  G  Y   +   
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDP 98
                  +    +   K   + +++       L  L         Q     G T  D+  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    +N I+  V++R   K  +  L++ 
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645


>gi|331229057|ref|XP_003327195.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309306185|gb|EFP82776.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 968

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 43/195 (22%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKA 66
           +  DL  + +E  N  SK     Q   G +   +   W+     KI+AL      + +  
Sbjct: 780 ITIDLSQDALEDENMGSKA---RQ---GVLDRLDPGKWR--TSTKIEALVEELSKLNQSD 831

Query: 67  NAAPIIVAYHFNSDLARLQKA-----FPQGR-----TLDKDPCTIQEW-NEGKIPLLFAH 115
           +    IV   F   L  +++      F   R     T +    TIQ + N   + +    
Sbjct: 832 HTIKSIVFSQFTVFLDLIERRLQLAGFKLARLQGNMTPEARNRTIQYFMNNNDVQVFLVS 891

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G  LNL     + +    WW+     Q ++R                   LI +N+
Sbjct: 892 LKAGGVALNLTEASRVFIM-DPWWNPAVELQAMDR-------------------LIIENS 931

Query: 176 IDELVLQRLRTKSTI 190
           I+  +++  + K  +
Sbjct: 932 IESRIVELQKKKEAM 946


>gi|148689217|gb|EDL21164.1| Rad54 like 2 (S. cerevisiae) [Mus musculus]
          Length = 1466

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------------------- 86
           +  K+  L  +IE++      I+V     S LA +++                       
Sbjct: 718 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVR 777

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 778 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 836

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 837 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 891


>gi|126090612|ref|NP_109655.2| helicase ARIP4 [Mus musculus]
          Length = 1467

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------------------- 86
           +  K+  L  +IE++      I+V     S LA +++                       
Sbjct: 719 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVR 778

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 779 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 837

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 838 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 892


>gi|74137993|dbj|BAE25404.1| unnamed protein product [Mus musculus]
          Length = 1434

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------------------- 86
           +  K+  L  +IE++      I+V     S LA +++                       
Sbjct: 686 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVR 745

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 746 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 804

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 805 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 859


>gi|81916664|sp|Q99NG0|ARIP4_MOUSE RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2; AltName: Full=Steroid receptor-interacting
           SNF2 domain-containing protein-like
 gi|12331285|emb|CAC24703.1| steroid receptor-interacting SNF2 domain protein [Mus musculus]
 gi|126631448|gb|AAI33715.1| RAD54 like 2 (S. cerevisiae) [Mus musculus]
          Length = 1466

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------------------- 86
           +  K+  L  +IE++      I+V     S LA +++                       
Sbjct: 718 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVR 777

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 778 NVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDAS 836

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 837 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 891


>gi|297243714|ref|ZP_06927645.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
 gi|296888465|gb|EFH27206.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
          Length = 735

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + + +C L  E    +  A  +     +   +   D+ ++       K+    V   + 
Sbjct: 493 IENKSWCQLNAEEESEYEKALMSGNFHAIRRVSWNVDDMRNS---SKAKLLKEIVEEAEL 549

Query: 67  NAAPIIVAYHFNSDLARLQKAFP--------QGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
               +++   +   L ++  AF            + +K    I+E+ N     +L +   
Sbjct: 550 EERKVLIFSFYLDTLHKVVDAFSNKCIGLINGSVSPEKRIKIIEEFDNAPAGSVLVSQIM 609

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLN+Q   +++V            Q I R       + G  R V VY+L+A+ TID
Sbjct: 610 SGGTGLNIQ-SASVVVICEPQLKPSTENQAISR-----AYRMGQSRDVIVYHLLAEKTID 663

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E + + L  K  I +   +
Sbjct: 664 EGITKVLENKQEIFNRFAD 682


>gi|251797976|ref|YP_003012707.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247545602|gb|ACT02621.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 589

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT-IQ 102
            + K + +  +I++ N   +I+   + +    L + F        P    +++     + 
Sbjct: 366 ANTKAEKVMELIQQINDK-VIIFTEYRASQEYLLQFFRSHNILAVPYRGGMNRGKKDWMM 424

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G+  +L A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G K
Sbjct: 425 DLFRGRAQVLIA-TEAGGEGINLQF-CHNMINFDLPWNPMRVEQRIGRV-----HRLGQK 477

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +Y L    TI+E ++  L  K  + +L++
Sbjct: 478 EDVKIYNLCTLGTIEEHIVNLLHEKINLFELVI 510


>gi|238499905|ref|XP_002381187.1| DNA excision repair protein (Rad5), putative [Aspergillus flavus
            NRRL3357]
 gi|220692940|gb|EED49286.1| DNA excision repair protein (Rad5), putative [Aspergillus flavus
            NRRL3357]
          Length = 1246

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1145 VLLISLRAGGVGLNLTAASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVAVTRF 1198

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +++I+  +L+    K  I   L
Sbjct: 1199 VVKDSIEARMLRVQERKMNIAGSL 1222


>gi|169779277|ref|XP_001824103.1| DNA repair protein RAD5 [Aspergillus oryzae RIB40]
 gi|83772842|dbj|BAE62970.1| unnamed protein product [Aspergillus oryzae]
          Length = 1246

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N+ +    WW      Q I+R+      + G  R V V   
Sbjct: 1145 VLLISLRAGGVGLNLTAASNVFMM-DPWWSFAIEAQAIDRV-----HRMGQLRDVAVTRF 1198

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +++I+  +L+    K  I   L
Sbjct: 1199 VVKDSIEARMLRVQERKMNIAGSL 1222


>gi|313895499|ref|ZP_07829055.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975625|gb|EFR41084.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 91

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +     A+ G G+ L      +VFFS+ + +   +Q   RI      +   K      Y+
Sbjct: 1   MFVGQIAAAGLGITLIAAA-TMVFFSMDYSMSNFEQAKARI-----HRVSQKENCHYIYI 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +A  T+D  VL+ LR K+ +  LL++  +K
Sbjct: 55  VAAGTVDRKVLKALRDKADLAKLLVDDYRK 84


>gi|330906673|ref|XP_003295556.1| hypothetical protein PTT_01652 [Pyrenophora teres f. teres 0-1]
 gi|311333059|gb|EFQ96347.1| hypothetical protein PTT_01652 [Pyrenophora teres f. teres 0-1]
          Length = 1167

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 21/203 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + E + +   + I       +  +C QLA+   A+   E K  + +   K+  L  +++
Sbjct: 902  LKEETFAESNPDIIYEELELYQDYQCHQLASKYHALKKFELKDHEWMDSGKVAKLLALLK 961

Query: 65   K--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE--WNEGKIPL 111
            K   N    +V   F S         D   +      G T  ++  ++ +  + +  I L
Sbjct: 962  KYKENGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIQERQSLMDVFYQDESIQL 1021

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  S G G+NL    N ++ F   ++ ++  Q        R  + G  R V V  L+
Sbjct: 1022 FMISTKSGGAGINL-ACANKVIIFDSSFNPQDDIQA-----ENRAHRVGQTREVEVVRLV 1075

Query: 172  AQNTIDELVLQRLRTKSTIQDLL 194
             ++T++E +     +K  +  ++
Sbjct: 1076 TKDTVEEQIYALGVSKLELDKMV 1098


>gi|85000227|ref|XP_954832.1| global transcription activator, SNF2 family member [Theileria
           annulata strain Ankara]
 gi|65302978|emb|CAI75356.1| global transcription activator, SNF2 family member, putative
           [Theileria annulata]
          Length = 1162

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 28  KTVKCLQLANG-AVYYDEE----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
           K ++  ++ N   +Y +               K+  L++I+ +       +++     S 
Sbjct: 646 KFLQLRKICNHPFLYVNNNFIPCNDLIINSSGKMCILDMILSRLYYVNHRVLIFSQMTSL 705

Query: 81  LARLQ-----KAFPQGRT-----LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L+     +++   R       +K    I  +NE      +      +   G+NLQ  
Sbjct: 706 LDILEVYLNYRSYKYLRLDGNLSSEKRLERINLFNEPDSQYFVFILSTKAGSLGINLQ-S 764

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + ++ +   W+ +   Q   R+      + G K  V    LI  NTI++ + +
Sbjct: 765 ADTVIIYDSDWNPQNDLQAQSRV-----HRIGQKNQVITLRLITPNTIEDNIYR 813


>gi|327356947|gb|EGE85804.1| DNA repair protein rad5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1199

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCT 100
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 997  TSAKIHALISQLTRLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPHLRFDGTMAQRARAAV 1056

Query: 101  IQEWNEGKIP-----------------------------LLFAHPASCGHGLNLQYGGNI 131
            + +++   IP                             +L     + G GLNL    N 
Sbjct: 1057 LAKFSSVGIPDEEDGEDEGNKRQSNLSLSRSHVREPTPNVLLISLRAGGVGLNLTT-ANQ 1115

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 1116 VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRMLRIQERKMMIA 1170

Query: 192  DLL 194
              L
Sbjct: 1171 GSL 1173


>gi|239613018|gb|EEQ90005.1| DNA repair protein rad5 [Ajellomyces dermatitidis ER-3]
          Length = 1194

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCT 100
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 992  TSAKIHALISQLTRLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPHLRFDGTMAQRARAAV 1051

Query: 101  IQEWNEGKIP-----------------------------LLFAHPASCGHGLNLQYGGNI 131
            + +++   IP                             +L     + G GLNL    N 
Sbjct: 1052 LAKFSSVGIPDEEDGEDEGNKRQSNLSLSRSHVREPTPNVLLISLRAGGVGLNLTT-ANQ 1110

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 1111 VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRMLRIQERKMMIA 1165

Query: 192  DLL 194
              L
Sbjct: 1166 GSL 1168


>gi|261189609|ref|XP_002621215.1| DNA repair protein rad5 [Ajellomyces dermatitidis SLH14081]
 gi|239591451|gb|EEQ74032.1| DNA repair protein rad5 [Ajellomyces dermatitidis SLH14081]
          Length = 1194

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 46/183 (25%)

Query: 52   HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCT 100
               KI AL   + +       +V   F S L  +     +   P  R             
Sbjct: 992  TSAKIHALISQLTRLPPNTKSVVFSQFTSFLDLIGPQLTRAGIPHLRFDGTMAQRARAAV 1051

Query: 101  IQEWNEGKIP-----------------------------LLFAHPASCGHGLNLQYGGNI 131
            + +++   IP                             +L     + G GLNL    N 
Sbjct: 1052 LAKFSSVGIPDEEDGEDEGNKRQSNLSLSRSHVREPTPNVLLISLRAGGVGLNLTT-ANQ 1110

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW      Q I+R+      + G  + V V   I +++I+  +L+    K  I 
Sbjct: 1111 VFMMDPWWSFATEAQAIDRV-----HRMGQLKDVSVTRFIVKDSIEGRMLRIQERKMMIA 1165

Query: 192  DLL 194
              L
Sbjct: 1166 GSL 1168


>gi|189535029|ref|XP_687332.3| PREDICTED: helicase ARIP4 [Danio rerio]
          Length = 1437

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLAR-LQKAFPQGRT-LDKDPCTIQ 102
                V  + +  L VI +  +  P+ +       +  R +      G T   +    I 
Sbjct: 737 GDKILVFSQSLSTLTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLIN 796

Query: 103 EWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++N+       +      +   G+NL  G N +V F   W+     Q +      R  + 
Sbjct: 797 QFNDPANTQAWVFLLSTRAGCLGVNL-IGANRVVVFDASWNPCHDAQAV-----CRVYRY 850

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G ++   +Y L+   T+++ +  R  +K  + D +++ L
Sbjct: 851 GQRKPCHIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDL 889


>gi|94732329|emb|CAK11033.1| novel protein similar to human and mouse steroid
           receptor-interacting SNF2 domain protein (Srisnf2l)
           [Danio rerio]
          Length = 1305

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLAR-LQKAFPQGRT-LDKDPCTIQ 102
                V  + +  L VI +  +  P+ +       +  R +      G T   +    I 
Sbjct: 605 GDKILVFSQSLSTLTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLIN 664

Query: 103 EWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++N+       +      +   G+NL  G N +V F   W+     Q +      R  + 
Sbjct: 665 QFNDPANTQAWVFLLSTRAGCLGVNL-IGANRVVVFDASWNPCHDAQAV-----CRVYRY 718

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G ++   +Y L+   T+++ +  R  +K  + D +++ L
Sbjct: 719 GQRKPCHIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDL 757


>gi|71277007|gb|AAZ29723.1| ATRY [Macropus eugenii]
          Length = 1771

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 44/192 (22%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
             D +    E H  K+  L  I++ A      ++V       L  ++     G     D  
Sbjct: 1306 TDSDAKVLE-HSGKMVLLFEILKMAEELGDKVLVFSQSLISLDLIEDFLELGSNEISDDK 1364

Query: 100  TI--------------------------------QEWNEGKI---PLLFAHPASCGHGLN 124
                                              +E+N+       L      +   G+N
Sbjct: 1365 DKPRIYKGEGKWFRNIDYYRLDGSSSAQSRKKWAEEFNDETNVRGRLFLISTKAGSLGIN 1424

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T+++ + +R 
Sbjct: 1425 L-VAANRVIVFDASWNPSYDIQSIFRV-----YRFGQSKPVFVYRFLAQGTMEDKIYERQ 1478

Query: 185  RTKSTIQDLLLN 196
             TK ++   +++
Sbjct: 1479 VTKQSLSFRVID 1490


>gi|320591376|gb|EFX03815.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 978

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD--KDPCTIQEWNEGKIPLL 112
           +  N    IV   F S L  L               GR  +  ++        +    +L
Sbjct: 750 DSENEHKFIVFSQFTSMLDLLGPFLERAGLGHVQYDGRMRNDAREASLRSLREDAATRVL 809

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                    GLNL     +++    +W+    +Q I+R+      +      V VY L  
Sbjct: 810 LCSLKCGALGLNLTAATRVVIL-EPFWNPFVEEQAIDRV-----HRLTQTVDVTVYKLTI 863

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
            +T+++ +L+    K  +    L 
Sbjct: 864 ADTVEQRILELQAKKRLLAAHALE 887


>gi|297812047|ref|XP_002873907.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319744|gb|EFH50166.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1074

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 35/220 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------------NGAVYYDEEKHW 48
           + Q++ Y  L  +++E  N   +  + L +A                  G  Y   +   
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTL-DKDP 98
                  +    +   K   + +++       L  L         Q     G T  D+  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q        R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA-----QDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+    +N I+  V++R   K  +  L++ 
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645


>gi|224065816|ref|XP_002190293.1| PREDICTED: similar to hCG1997495 [Taeniopygia guttata]
          Length = 1473

 Score = 78.1 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 38/179 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------------GRT 93
           +  K+  L  +IE++      I+V     S L+ +++   +                 R 
Sbjct: 729 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLSVIEEFLAKRLMPSPPGSDGGVHNWVRN 788

Query: 94  LD-----------KDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           ++           +    I ++N+     + L      +   G+NL  G N +V F   W
Sbjct: 789 INYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNL-IGANRVVVFDASW 847

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +     Q +      R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 848 NPCHDAQAV-----CRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDL 901


>gi|242046444|ref|XP_002461093.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
 gi|241924470|gb|EER97614.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
          Length = 756

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
           +Y D            +  L  +IE       ++  H    +  +++   + +       
Sbjct: 505 IYTDS---AVAKIPAVLDFLGTMIEA--GCKFLIFAHHQPMIDAIEQHLSKKKVKCIKID 559

Query: 94  ----LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L      +  + E   I        + G+G+ L    + ++F  L W   +  Q  
Sbjct: 560 GKTPLTTRQTLVTSFQENDDIKAAVLSIKAGGYGITLT-AASTVIFAELSWTPGDIIQAE 618

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +R       + G   +V VYYL+A  T D+L+   ++ K      +L+  +K
Sbjct: 619 DR-----AHRIGQVSSVNVYYLLANGTADDLMWDSVQGKLENLGQMLDGQEK 665


>gi|240274020|gb|EER37538.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1762

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
            W      + +  + IIE+  A    +++  H    L  L+    Q +           + 
Sbjct: 1306 WSLELSHRAQVADQIIERSIAAGDKVLLFSHSIPTLNYLELVLKQAKRSYSRLDGKTPIA 1365

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  + +N G    +      + G GLN+  G N ++ F   ++    +Q + R    
Sbjct: 1366 TRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR---- 1420

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1421 -AYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD 1461


>gi|221118789|ref|XP_002158846.1| PREDICTED: similar to RAD54-like 2, partial [Hydra magnipapillata]
          Length = 743

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 37/171 (21%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----------------QKAFPQGR 92
           +  K   L  II++  A    +++       L  +                 +  + +GR
Sbjct: 579 NSGKFLVLNKIIQESMARGDKMLIFSQSLLTLNSIEEFLQNIPIKNGSDHEKKYCWKKGR 638

Query: 93  TLDK---------DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +             I+ +N        +      +   G+NL    N +V F + W+
Sbjct: 639 DYFRLDGSTSTLEREKLIRLFNSKDNKHTNIFLLSTRAGCLGINL-IAANRVVVFDVSWN 697

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                Q +      R  + G ++   +Y L+A NT+++ +  R  +K  I 
Sbjct: 698 PCHDAQAV-----CRVYRYGQEKPCHIYRLVASNTMEKKIYYRQISKQGIS 743


>gi|330930186|ref|XP_003302929.1| hypothetical protein PTT_14926 [Pyrenophora teres f. teres 0-1]
 gi|311321396|gb|EFQ88965.1| hypothetical protein PTT_14926 [Pyrenophora teres f. teres 0-1]
          Length = 1159

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 50   EVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
             +   K  A++  I    ++     IIV   F + +  L++ F +            +L 
Sbjct: 989  VLPSAKTIAVKSQILNWRKEKGDVKIIVYTQFLAMIRILKRVFAKEGWRCEEYHGKMSLK 1048

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K    I  + +   P +L A     G GLNL    + ++    WW+    QQ        
Sbjct: 1049 KRDDAIAAFADTAGPAILLASLRCGGLGLNLTM-ASKVIMIDPWWNSASEQQA-----FC 1102

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G     F+  L   NT+DE +++    K    D+++ 
Sbjct: 1103 RVFRIGQNEKTFMSRLCVTNTVDEQLVRMQERKQEEIDVVME 1144


>gi|307106103|gb|EFN54350.1| hypothetical protein CHLNCDRAFT_135608 [Chlorella variabilis]
          Length = 877

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 72  IVAYHFNSDLARLQKA-----FPQGRT-----LDKDPCTIQEWNEGKIP---LLFAHPAS 118
           +V   F S L  ++ A     F  GR        +    ++ +         +L     +
Sbjct: 734 VVFSQFTSYLDLVEAALAGEGFVTGRLDGKTSAKRRGEVLRAFQSSSASSPTVLLVSLKA 793

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    + +     WW+    +Q ++R+      + G  R          ++I+E
Sbjct: 794 GGVGLNLT-AASRVHLLDPWWNPSVEEQAMDRV-----HRLGQTR---------ADSIEE 838

Query: 179 LVLQRLRTKSTIQDLLLNALKKETI 203
            +L     K  +  +  +  K E I
Sbjct: 839 RMLALQEQKRDLMRVAFDRRKAEDI 863


>gi|297469909|ref|XP_002707323.1| PREDICTED: transcriptional regulator ATRX [Bos taurus]
 gi|297492973|ref|XP_002700028.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            (RAD54 homolog, S. cerevisiae) isoform 1 [Bos taurus]
 gi|296470861|gb|DAA12976.1| ATP-dependent helicase ATRX isoform 1 [Bos taurus]
          Length = 2479

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1990 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2046

Query: 65   ---KANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCT-IQEWNEGKI---PLLFA 114
               +    P+I    +  +   L  +      G T  +      +E+N+       L   
Sbjct: 2047 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2102

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2103 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2156

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2157 TMEDKIYDRQVTKQSLSFRVVD 2178


>gi|325095597|gb|EGC48907.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H88]
          Length = 1787

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
            W      + +  + IIE+  A    +++  H    L  L+    Q +           + 
Sbjct: 1333 WSLELSHRAQVADQIIERSIAAGDKVLLFSHSIPTLNYLELVLKQAKRSYSRLDGKTPIA 1392

Query: 96   KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  + +N G    +      + G GLN+  G N ++ F   ++    +Q + R    
Sbjct: 1393 TRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR---- 1447

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1448 -AYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD 1488


>gi|126342606|ref|XP_001372327.1| PREDICTED: similar to alpha thalassaemia mental retardation X-linked
            protein [Monodelphis domestica]
          Length = 2447

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1976 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2029

Query: 65   ------KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                       P+I                    T        +E+N+       L    
Sbjct: 2030 ASREKSDDKDKPLIYKGEGKWFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIIS 2089

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ T
Sbjct: 2090 TKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQNKPVYVYRFLAQGT 2143

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2144 MEDKIYDRQVTKQSLSFRVVD 2164


>gi|46137913|ref|XP_390647.1| hypothetical protein FG10471.1 [Gibberella zeae PH-1]
          Length = 1033

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 39   AVYYDEEKHW--KEVHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
            A   D+ +H+   E H  KI+AL E + +       I+   +   L  + +   +     
Sbjct: 860  ATTKDDHEHYFNAEGHSTKIRALVEDVRKDLWTTKSIIFSCWTRTLHLIARHLEKAGIPY 919

Query: 92   ------RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    L +   T+ ++  G + P+L     +   GLNL    N +    L W+    
Sbjct: 920  LQLDGNSPLPQRQQTLNKFENGTETPVLIMTTGTGAFGLNLT-SANRIFIAELQWNPSVE 978

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE----LVLQRLRTKSTIQ 191
             Q I R       + G K+ V V   I ++T++E     + Q+   K  I 
Sbjct: 979  SQAISR-----AIRLGQKKEVRVTRYITKDTVEEVNRQDIKQQQEYKKQIA 1024


>gi|71991518|ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1)
           [Caenorhabditis elegans]
 gi|30145715|emb|CAB03135.2| C. elegans protein F53H4.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 957

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            P  I+++ +   I +      + G GLNL    N ++ F   W+ +   Q   RI    
Sbjct: 577 RPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTC-ANKVIIFDPDWNPQADNQAKNRI---- 631

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G    V +Y L++  TI++L   +   K  +   LL
Sbjct: 632 -YRMGQTNDVAIYRLVSNGTIEDLKFFKQVQKENLAARLL 670


>gi|297469911|ref|XP_592333.4| PREDICTED: transcriptional regulator ATRX isoform 2 [Bos taurus]
 gi|297492975|ref|XP_002700029.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            (RAD54 homolog, S. cerevisiae) isoform 2 [Bos taurus]
 gi|296470862|gb|DAA12977.1| ATP-dependent helicase ATRX isoform 2 [Bos taurus]
          Length = 2441

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1952 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2008

Query: 65   ---KANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCT-IQEWNEGKI---PLLFA 114
               +    P+I    +  +   L  +      G T  +      +E+N+       L   
Sbjct: 2009 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2064

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2065 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2118

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2119 TMEDKIYDRQVTKQSLSFRVVD 2140


>gi|261327295|emb|CBH10271.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1497

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EG 107
           L   I +     +++   + S L  L     Q          G  + +    I  ++ + 
Sbjct: 520 LLRYISEDLREKVVLFSTYKSHLYLLMFLLRQRGVVSEVLHGGVEVKERQLIIDRFSVDP 579

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L     + G G+NL    N  + F + W+  +  Q   R+      + G +R V +
Sbjct: 580 SLRVLLCSTKALGVGINL-VAANHCILFDVSWNPSDDTQATYRL-----YRYGQRRPVTI 633

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y +  + T + +V     +KS I   +++
Sbjct: 634 YRIATEGTFEHVVFFYALSKSWIHKKIVD 662


>gi|72387419|ref|XP_844134.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|62360642|gb|AAX81053.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
 gi|70800666|gb|AAZ10575.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1497

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EG 107
           L   I +     +++   + S L  L     Q          G  + +    I  ++ + 
Sbjct: 520 LLRYISEDLREKVVLFSTYKSHLYLLMFLLRQRGVVSEVLHGGVEVKERQLIIDRFSVDP 579

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L     + G G+NL    N  + F + W+  +  Q   R+      + G +R V +
Sbjct: 580 SLRVLLCSTKALGVGINL-VAANHCILFDVSWNPSDDTQATYRL-----YRYGQRRPVTI 633

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y +  + T + +V     +KS I   +++
Sbjct: 634 YRIATEGTFEHVVFFYALSKSWIHKKIVD 662


>gi|85105641|ref|XP_962010.1| hypothetical protein NCU05246 [Neurospora crassa OR74A]
 gi|28923601|gb|EAA32774.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|118496048|dbj|BAF37540.1| DNA repair and recombination protein RAD5C [Neurospora crassa]
          Length = 1111

 Score = 78.1 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            +V   + S L  ++ A               T       + ++  +  + ++     + G
Sbjct: 956  VVFSGWTSHLDLIELALEDAGITFTRLDGKMTRTARTAAMDKFREDPSVQVILVSIMAGG 1015

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    ++ V     ++     Q ++R+      + G KR V     I  N+ +E +
Sbjct: 1016 LGLNLTTASSVYVM-EPQFNPAAEAQAVDRV-----HRLGQKRPVRTVRYIMANSFEEKM 1069

Query: 181  LQRLRTKSTIQDLLLNA 197
            L+    K  +  L ++ 
Sbjct: 1070 LRLQEKKKKLASLSMDG 1086


>gi|290980595|ref|XP_002673017.1| lar to transcriptional regulator ATRX (X-linked helicase II)
           [Naegleria gruberi]
 gi|284086598|gb|EFC40273.1| lar to transcriptional regulator ATRX (X-linked helicase II)
           [Naegleria gruberi]
          Length = 1366

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 42/194 (21%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            V  ++ K     +  K++ L  IIEK   N   I+V   +   L  ++  F     +  
Sbjct: 811 PVLANDYKLHNARNSPKMEFLLRIIEKCYLNNEKILVFTQYVEMLDVMEAVFKHTPIVVG 870

Query: 97  DPCTIQEWN----------------EGKIP------------------LLFAHPASCGHG 122
                                    +G I                   +      + G G
Sbjct: 871 TEEDEDNQTVPIRKTLSKGDDYLRMDGSISGRARQDLVDSFTEESTAHVFIISTKAGGLG 930

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL      +V F   W+    +Q      + R  + G K+ V+VY  +   + +E +  
Sbjct: 931 INL-IAATRVVIFDPCWNDTWDKQA-----LFRAYRYGQKKPVYVYRFVTYGSAEEKIFN 984

Query: 183 RLRTKSTIQDLLLN 196
               K+ +   +++
Sbjct: 985 LSTAKAWLAKRIVD 998


>gi|46487453|gb|AAS99124.1| alpha thalassaemia mental retardation X-linked protein [Macropus
            eugenii]
          Length = 2464

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1974 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2027

Query: 65   ------KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                       P+I                    T        +E+N+       L    
Sbjct: 2028 ASREKSDDKDKPLIYKGEGKWFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIIS 2087

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ T
Sbjct: 2088 TKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQNKPVYVYRFLAQGT 2141

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2142 MEDKIYDRQVTKQSLSFRVVD 2162


>gi|194379178|dbj|BAG58140.1| unnamed protein product [Homo sapiens]
          Length = 858

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
           ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 369 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 425

Query: 65  ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
              +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 426 EKTEDKDKPLI----YKGEGKWLRNIDHYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 481

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 482 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 535

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T+++ +  R  TK ++   +++
Sbjct: 536 TMEDKIYDRQVTKQSLSFRVVD 557


>gi|312137978|ref|YP_004005314.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887317|emb|CBH46628.1| putative ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 585

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y     E   D  G  IE      +      Q+ N       E         K+     
Sbjct: 359 IYDVLLAEAVDDGFGAGIERHGRVLAVLTALKQVCNHPGLITGEMDSLAGRSGKLDLCTD 418

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK 108
           I+       +P ++   +      L +   +           G    +    +  +    
Sbjct: 419 IVATNMETGSPTLIFTQYRRTGEMLVRHLAEQFDVVAPFLHGGLGQSERAEIVSRFQSED 478

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P L     + G GL L    + +V F  WW+     Q  +R       + G  R V V
Sbjct: 479 GPPALVLSLRAAGTGLTLTRAAD-VVHFDRWWNPAVEAQASDR-----AHRIGQTRTVTV 532

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDL 193
             L +  T++E +      K+ + DL
Sbjct: 533 TTLTSTTTVEEHIAGMHGHKAALTDL 558


>gi|168705829|ref|ZP_02738106.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 127

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNLQ+  N +  F  WW+     Q I R       + G K  V V   
Sbjct: 18  VLLMSYGTGSVGLNLQF-TNYVFLFDRWWNPAIEDQAINR-----AHRLGQKHPVTVTRF 71

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           ++  TI+  +   L  K  + + L+
Sbjct: 72  LSGGTIEGRIADILDAKRKVFNDLI 96


>gi|316932603|ref|YP_004107585.1| helicase domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600317|gb|ADU42852.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 956

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 21/163 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDP 98
           D+K   L  +I++    +   +++   + +  A +                 G T D   
Sbjct: 511 DKKGNELVKLIDRLVNKDGKKVLIFTEYRATQAFILYILRSVLNIESVLIHGGHTADDKR 570

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++++ E  +P+      + G GLN+    +IL+ + L W+     Q I R+      +
Sbjct: 571 AAVEKF-EDDVPV-LISTEAGGEGLNMHRNCHILINYDLPWNPSRISQRIGRL-----YR 623

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V V+   A++TID  +L  L  +       ++ +  E
Sbjct: 624 YGQKQRVIVFNFHAKDTIDNEILGVLIDRVMAIVATMSKVSAE 666


>gi|120611354|ref|YP_971032.1| helicase domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120589818|gb|ABM33258.1| helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 709

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 49  KEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
           + +   K+  L   ++   +   II+   + S +  L++A               +  K 
Sbjct: 525 RTLESLKVPFLLDTVQSMGDDDKIIIFCEYMSTVDALKQALAGLGIGCVSLVGADSAKKR 584

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  + +     +     ++ G G+ L    N++ F S+ W     +Q  +R      
Sbjct: 585 QAAVDAFQQVPTNKVFIGTTSAAGVGITLT-AANLVAFASMPWTPALMRQAEDR-----A 638

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V V   I   TIDE VL+    K T +  ++ A K 
Sbjct: 639 YRLGQLRDVLVIVPIVPGTIDEGVLKLQDAKRTTEVEVVEAAKA 682


>gi|56759244|gb|AAW27762.1| SJCHGC05261 protein [Schistosoma japonicum]
          Length = 141

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    A  G GLNL  G + ++F    W+  +  Q ++R       + G  R V VY LI
Sbjct: 1   MLLTTAVGGLGLNLT-GADTVIFVEHDWNPSKDLQAMDR-----AHRIGQLRTVNVYRLI 54

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
            +N+++E ++     K  +   +L
Sbjct: 55  TENSVEEQIMNLQAFKLYLATTVL 78


>gi|317419683|emb|CBN81720.1| Helicase SRCAP [Dicentrarchus labrax]
          Length = 429

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDP 98
           EV   K++ L  ++ K       +++       L  L++             G T  +  
Sbjct: 303 EVSPLKLQTLHTLLRKLKTGGHRVLIFTQMTRMLDVLEQFLNYHGHIYLRLDGSTRVEQR 362

Query: 99  CTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + + +N  + I        S G G+NL  G + +VF+   W+     Q  +R      
Sbjct: 363 QALMERFNADRRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPTMDAQAQDRC----- 416

Query: 157 RQAGFKRAVFVYY 169
            + G  R V +Y 
Sbjct: 417 HRIGQTRDVHIYR 429


>gi|308163064|gb|EFO65427.1| DNA repair and recombination protein Rhp26p [Giardia lamblia P15]
          Length = 930

 Score = 78.1 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 48  WKEVHDEKI-----KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
           W + HD+ +     + +  I+E+     I+    F +   R+    P    +D  P  I 
Sbjct: 554 WNQSHDKVLVFCQGRMMLNIVERI----ILETASFKNAYLRMDGNIP----VDARPALIS 605

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  + +I L        G GLNL    N +   +  W+     Q +ER       +   
Sbjct: 606 RFSTDPQIRLFLLTTRVGGLGLNLT-AANHVFLLNPNWNPTIDDQSVERCW-----RITQ 659

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V VY +    TI+E +  R   K  +   +L+
Sbjct: 660 SKKVIVYKVFTGGTIEEKIFNRQIYKRLLVSRVLD 694


>gi|302816879|ref|XP_002990117.1| hypothetical protein SELMODRAFT_131060 [Selaginella moellendorffii]
 gi|300142130|gb|EFJ08834.1| hypothetical protein SELMODRAFT_131060 [Selaginella moellendorffii]
          Length = 700

 Score = 77.7 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKD 97
              K+  L  ++         +++       L  L+            +       + + 
Sbjct: 317 ASAKLTLLHSMLGSLKKEGHRVLIFSQMTKLLDILEDYLTFEFGHDSYERVDGSVPVAER 376

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N+     +      SCG G+NL    + ++ +   ++     Q + R      
Sbjct: 377 QAAIRRYNKDTSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR-----A 430

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + G  + + VY L+ + +++E +L   + K  ++ L
Sbjct: 431 HRIGQSKKLLVYRLLVRGSVEERILHLAKKKLELEQL 467


>gi|296815474|ref|XP_002848074.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238841099|gb|EEQ30761.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1049

 Score = 77.7 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 49   KEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFP-----------QGRT 93
              V   K++A+   I +    +    I +   F   ++ L                +   
Sbjct: 845  HMVPGAKLRAVRSFISQWLQDSPGTKITIFTQFIGMMSILCSLCETEGWGYTTLSGKLSH 904

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              +     +   E KI +L +   + G GL+L       +   LWW+    QQ   R+  
Sbjct: 905  ATRHANIKRFREEEKINILISSLKAGGVGLDLTM-ATKCILLDLWWNEAIEQQAFCRLF- 962

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K+ V +  +   NT+D+ +     TKS   + ++
Sbjct: 963  ----RIGQKKDVEIIRICVDNTVDDRIQLLQSTKSAHIEEVM 1000


>gi|126336343|ref|XP_001367984.1| PREDICTED: similar to hCG1997495, [Monodelphis domestica]
          Length = 1476

 Score = 77.7 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 39/180 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------------------- 90
           +  K+  L  +IE++      I+V     S L+ +++   +                   
Sbjct: 730 NSPKMVLLFHLIEESVKLGDKILVFSQSLSTLSVIEEFLAKRLMPCLPSSDGQRDQNWVR 789

Query: 91  --------GRT-LDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                   G T   +    I ++N+       L      +   G+NL  G N +V F   
Sbjct: 790 NFSYYRLDGSTSASERERLINQFNDPNNSSVWLFLLSTRAGCLGVNL-IGANRVVVFDAS 848

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+     Q +      R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 849 WNPCHDAQAV-----CRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDL 903


>gi|167463289|ref|ZP_02328378.1| helicase (Snf2/Rad54 family) protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384854|ref|ZP_08058515.1| RNA polymerase-associated helicase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150323|gb|EFX43825.1| RNA polymerase-associated helicase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 599

 Score = 77.7 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEW-- 104
            + K + +  +I       +I+   + +    L K                    ++W  
Sbjct: 374 SNTKAEKVMELIRNIQEK-VIIFTEYRASQEYLLKYLKDRGITAVPYRGGMNRGKKDWMM 432

Query: 105 ----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N  ++        + G G+NLQ+  + ++ F L W+    +Q I R+      + G
Sbjct: 433 DLFRNRAQV---LVATEAGGEGINLQF-CHHIINFDLPWNPMRVEQRIGRV-----HRLG 483

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V +Y L  Q TI+E +L  L  K  + + ++
Sbjct: 484 QTNDVKIYNLSTQGTIEEHILNLLHEKINMFEAVI 518


>gi|322505242|emb|CAM39730.2| DNA repair protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1288

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
            +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 1075 DMSNWGLQLSSKTQYLIDKIRSLPADDKVVVFSTFLTYL-RCAQHWLQAAGVSSAVYTGS 1133

Query: 93   -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 1134 MTMKQKHSLLELFHDATQPASPRVLLATTSSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 1192

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + RI      + G  + V +  LIA  TI++ + Q    K  + 
Sbjct: 1193 LNRI-----HRIGQTKPVTITKLIADGTIEQNISQLCERKRALS 1231


>gi|154340547|ref|XP_001566230.1| DNA repair protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1288

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
            +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 1075 DMSNWGLQLSSKTQYLIDKIRSLPADDKVVVFSTFLTYL-RCAQHWLQAAGVSSAVYTGS 1133

Query: 93   -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 1134 MTMKQKHSLLELFHDATQPASPRVLLATTSSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 1192

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + RI      + G  + V +  LIA  TI++ + Q    K  + 
Sbjct: 1193 LNRI-----HRIGQTKPVTITKLIADGTIEQNISQLCERKRALS 1231


>gi|67591480|ref|XP_665565.1| DNA repair protein rhp16 [Cryptosporidium hominis TU502]
 gi|54656315|gb|EAL35335.1| DNA repair protein rhp16 [Cryptosporidium hominis]
          Length = 1236

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 21/136 (15%)

Query: 52   HDEKIKAL-EVIIEKANAAPI---IVAYHFNSDLARLQKAFPQGRT----------LDKD 97
               KI  L E + +     P    IV   F + L  +     +             + + 
Sbjct: 1107 SSTKIDTLLEEVNKMMQEDPESKGIVFSQFTNMLDLVSYRLKKANIGCVMLAGSMSILQR 1166

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N+   + ++     + G GLNLQ   N +     WW+     Q        R 
Sbjct: 1167 NSILYSFNKFPDLKIILISLKAGGEGLNLQV-ANYVFLLDPWWNPAAELQA-----FQRA 1220

Query: 157  RQAGFKRAVFVYYLIA 172
             + G K+ V     I 
Sbjct: 1221 HRIGQKKKVTALRFIT 1236


>gi|194384686|dbj|BAG59503.1| unnamed protein product [Homo sapiens]
          Length = 654

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
           ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 165 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 221

Query: 65  ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
              +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 222 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 277

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 278 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 331

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T+++ +  R  TK ++   +++
Sbjct: 332 TMEDKIYDRQVTKQSLSFRVVD 353


>gi|115728810|ref|XP_792529.2| PREDICTED: similar to MGC108253 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115946919|ref|XP_001183580.1| PREDICTED: similar to MGC108253 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 338

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRT-LDKDPCT 100
             K + L+ ++ +     + +++   F   L  +Q+             G+T + +    
Sbjct: 164 SGKFQLLDKMLAELKEQGSRVLLFSQFVMVLDIVQEYLKIRGHKFVRMDGQTPVAERAQL 223

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++N+   + +      + G G+NL    N ++   + ++    +Q  +R       + 
Sbjct: 224 IDKFNKNDSVFIFMLSTRAGGVGINLT-AANTVILHDIDFNPYNDKQAEDRC-----HRV 277

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  R V V  L+++ TI+E +L   + K  ++  + + +  E
Sbjct: 278 GQTREVSVIRLVSKQTIEEGMLSCAKYKLKLEKQMTSGISGE 319


>gi|291407890|ref|XP_002720269.1| PREDICTED: transcriptional regulator ATRX [Oryctolagus cuniculus]
          Length = 2533

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2044 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2100

Query: 65   ---KANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCT-IQEWNEGKI---PLLFA 114
               +    P+I    +  +   L  +      G T  +      +E+N+       L   
Sbjct: 2101 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2156

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2157 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2210

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2211 TMEDKIYDRQVTKQSLSFRVVD 2232


>gi|317026691|ref|XP_001399362.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1116

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 29/179 (16%)

Query: 50   EVHDEKIKAL-EVIIEKANA--------API--IVAYHFNSDLARLQKAFPQ-------- 90
            E    K KAL   ++E A+          PI  +V   + S L  ++ A           
Sbjct: 931  EGPHTKTKALVTQLLETADESKNQGPGERPIKSVVFSAWTSHLDLIEIALRDHDITGFTR 990

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +     +  N   I +L A   + G GLNL     + +     ++     Q
Sbjct: 991  LDGTMSLAARSKALEELHNNPDITVLLATIGAGGVGLNLTAASKVYIM-EPQYNPAAVAQ 1049

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             ++R+      + G  R V     + + +I+E + +  + K  + DL LN  K +   V
Sbjct: 1050 AVDRV-----HRIGQTREVTTVQFLMKGSIEEKIFELAKKKQQLADLSLNRGKLDKKEV 1103


>gi|260793856|ref|XP_002591926.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
 gi|229277139|gb|EEN47937.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
          Length = 563

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 27/178 (15%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
           N+A +    LQ  N             + D  +  LE           +V  H    L  
Sbjct: 390 NNAEQRGALLQYFNETALV----KIPHIKDYVLDLLE------ADRKFLVFAHHQIVLDS 439

Query: 84  LQKAFPQ-----GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           L+ A  +      R   K P  I++        +    +      +   GL L    +++
Sbjct: 440 LRDALDKKGYGYIRIDGKTPSDIRQQLCDRYQTQDSCQVALLSITAASTGLTLT-AASLV 498

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           VF  L+W+     Q  +R       + G +  V V+YL+A+ T D+ +   ++ K  +
Sbjct: 499 VFTELFWNPGVLVQAEDR-----AHRIGQQDCVNVHYLVARGTADDYIWPLVQGKLDV 551


>gi|126651081|ref|ZP_01723292.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
 gi|126592282|gb|EAZ86331.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
          Length = 504

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 81/197 (41%), Gaps = 20/197 (10%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            Q+E+    +   +   N   +  +  ++   A+     K      + K +    IIE+A
Sbjct: 306 LQKEMCSSKEATALTLTNMLKEHGQSQEM--EAILA---KLMALEVNSKAEKTIEIIEQA 360

Query: 67  NAAPIIVAYHFNSDLARLQ-KAFPQGRT-------LDKDPCTIQEWNEGKIPLLFAHPAS 118
               +I+   + +    LQ     +G T        +K      +    +   +     +
Sbjct: 361 KDK-VIIFTEYRATQIYLQWYLHSKGITSVLFNGKFNKSKRDYMKHLFKERAQVLIATEA 419

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NLQ+  + ++ + L W+  + +Q I R+      + G +  V +Y L  +NTI+E
Sbjct: 420 GGEGINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEHDVHIYNLAIENTIEE 473

Query: 179 LVLQRLRTKSTIQDLLL 195
            +L+ L TK  + + ++
Sbjct: 474 KILELLHTKIDVFEKVV 490


>gi|5915738|sp|Q61687|ATRX_MOUSE RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=HP1
            alpha-interacting protein; AltName: Full=HP1-BP38
            protein; AltName: Full=Heterochromatin protein 2;
            AltName: Full=X-linked nuclear protein
 gi|3002558|gb|AAC08741.1| ATRX protein [Mus musculus]
          Length = 2476

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1986 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 2039

Query: 65   ------KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PL 111
                  +    P+I    +  +   ++                    +E+N+       L
Sbjct: 2040 ASREKTEDKEKPLI----YKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 2095

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 2096 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 2149

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T+++ +  R  TK ++   +++
Sbjct: 2150 AQGTMEDKIYDRQVTKQSLSFRVVD 2174


>gi|154091016|ref|NP_033556.2| transcriptional regulator ATRX [Mus musculus]
 gi|123121759|emb|CAM16251.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
 gi|123294232|emb|CAM19070.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
          Length = 2476

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1986 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 2039

Query: 65   ------KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PL 111
                  +    P+I    +  +   ++                    +E+N+       L
Sbjct: 2040 ASREKTEDKEKPLI----YKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 2095

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 2096 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 2149

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T+++ +  R  TK ++   +++
Sbjct: 2150 AQGTMEDKIYDRQVTKQSLSFRVVD 2174


>gi|74007785|ref|XP_860057.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 4 [Canis familiaris]
          Length = 2482

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1993 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2049

Query: 65   ---KANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCT-IQEWNEGKI---PLLFA 114
               +    P+I    +  +   L  +      G T  +      +E+N+       L   
Sbjct: 2050 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2105

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2106 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2159

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2160 TMEDKIYDRQVTKQSLSFRVVD 2181


>gi|194228051|ref|XP_001502735.2| PREDICTED: similar to ATRX [Equus caballus]
          Length = 2491

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2002 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2058

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2059 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2114

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2115 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2168

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2169 TMEDKIYDRQVTKQSLSFRVVD 2190


>gi|156550929|ref|XP_001603130.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 1160

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDP-----CTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            ++F  +  R    F    +++ +       T    N  +  L      + G G+NL  G 
Sbjct: 909  FNFQDEWKRGLDYFRMDGSVNSEKRNSMCKTFNNPNNKRARLFLISTRAGGLGINL-IGA 967

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            N +V F   W+     Q I RI      + G  +  ++Y  ++  T+++ +  R  TK +
Sbjct: 968  NRVVIFDPSWNPSNDLQSIFRIF-----RFGQSKPCYIYRFLSAGTMEQKIYNRQVTKLS 1022

Query: 190  IQDLLLN 196
            +   +L+
Sbjct: 1023 LSLRVLD 1029


>gi|299751065|ref|XP_001830032.2| helicase SWR1 [Coprinopsis cinerea okayama7#130]
 gi|298409203|gb|EAU91697.2| helicase SWR1 [Coprinopsis cinerea okayama7#130]
          Length = 1624

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 31/164 (18%)

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTI-Q 102
            K++ L  ++++  A    +++       L  L+              G T  +D   I +
Sbjct: 1348 KLQRLAELLQEKKAGGHRVLIFTQMTRVLDILEVFLNHHGYLYLRLDGATKIEDRQYITE 1407

Query: 103  EWNEG-KIPLLFAHPASCGHGL---------NLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +N   +I    +   S G G+         +L  G + ++F+   ++ +  +Q  +RI 
Sbjct: 1408 RFNADSRIFCFISSSRSGGIGIKTPQTDAKYSLT-GADTVIFYDSDFNPQMDRQCEDRI- 1465

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   G  R V +Y  ++Q T++E +L++   K ++ DL++ 
Sbjct: 1466 -------GQIRDVHIYRFVSQYTVEEAMLRKANQKRSLDDLVIQ 1502


>gi|224004070|ref|XP_002295686.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585718|gb|ACI64403.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 338

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 24/144 (16%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KDPC 99
              K+  L+ ++ +  A+   I++   F   L  ++        +   +D      K   
Sbjct: 199 ASGKLVLLDKLLPRLKADGHRILLFSQFKIMLDLIEDYLILRGFKSERIDGSITGLKRQA 258

Query: 100 TIQEW-----NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            I  +     N  + P ++     + G G+NL    +  + F   W+ +   Q   R   
Sbjct: 259 AIDRYQSKGDNGRENPFIMLLSTRAGGVGINLT-AADTCIIFDSDWNPQNDLQAQARC-- 315

Query: 154 TRQRQAGFKRAVFVYYLIAQNTID 177
               + G  + V +Y L+ + T +
Sbjct: 316 ---HRIGQTKNVKIYRLLTRKTYE 336


>gi|148682121|gb|EDL14068.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
          Length = 2429

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
            ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 1939 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 1992

Query: 65   ------KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PL 111
                  +    P+I    +  +   ++                    +E+N+       L
Sbjct: 1993 ASREKTEDKEKPLI----YKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 2048

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 2049 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 2102

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            AQ T+++ +  R  TK ++   +++
Sbjct: 2103 AQGTMEDKIYDRQVTKQSLSFRVVD 2127


>gi|66821527|ref|XP_644229.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60472422|gb|EAL70375.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1400

 Score = 77.7 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 48   WKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFP---------QGRT--L 94
            + E    K+KA    I          +V  H    +  L++A            G T  +
Sbjct: 996  YVETGRAKLKASSDYIINLIKKNEKFLVFAHHADIMNGLEEAIKSTGAGYIRIDGSTPAV 1055

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +     +  N     +      + G GL L    N++VF  L+W     +Q  +RI   
Sbjct: 1056 QRQAFVTKFQNNASCKVALLSITAAGTGLTLT-ASNLVVFVELYWTPGVLRQAEDRI--- 1111

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + G  +  +++YLI +NT+D+ +   +  K  +    L+  ++E +H 
Sbjct: 1112 --HRIGQTKTCYIHYLIGKNTLDDRIWPTICNKLEVLGETLDG-QEEVLHT 1159


>gi|301786781|ref|XP_002928805.1| PREDICTED: transcriptional regulator ATRX-like [Ailuropoda
            melanoleuca]
          Length = 2488

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1999 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2055

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2056 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2111

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2112 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2165

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2166 TMEDKIYDRQVTKQSLSFRVVD 2187


>gi|2306766|gb|AAC51655.1| zinc finger helicase [Homo sapiens]
          Length = 2492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|57113917|ref|NP_001009018.1| transcriptional regulator ATRX [Pan troglodytes]
 gi|38502929|sp|Q7YQM4|ATRX_PANTR RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP
 gi|33354055|dbj|BAC81111.1| ATRX [Pan troglodytes]
          Length = 2492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|281353705|gb|EFB29289.1| hypothetical protein PANDA_018856 [Ailuropoda melanoleuca]
          Length = 2482

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1993 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2049

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2050 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2105

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2106 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2159

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2160 TMEDKIYDRQVTKQSLSFRVVD 2181


>gi|83771803|dbj|BAE61933.1| unnamed protein product [Aspergillus oryzae]
          Length = 939

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT-IQEWNEG- 107
            II+++      I+V  H    L  +         + +   GRT         + +N G 
Sbjct: 691 SIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNLGS 750

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GLN+    N ++ F   +     +Q + R       + G ++ VFV
Sbjct: 751 EKQVYLISTRAGGLGLNIPV-ANRVIIFDFKFSPVWEEQAVGR-----AYRLGQQKPVFV 804

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y  IA  T +E++  +   K+ +   +++
Sbjct: 805 YRFIAGGTFEEVMYNKAVFKTQLAFRVVD 833


>gi|33354053|dbj|BAC81110.1| ATRX [Homo sapiens]
 gi|133923365|gb|ABO43036.1| alpha thalassemia/mental retardation syndrome X-linked [Homo sapiens]
          Length = 2492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|20336209|ref|NP_000480.2| transcriptional regulator ATRX isoform 1 [Homo sapiens]
 gi|311033500|sp|P46100|ATRX_HUMAN RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP; AltName: Full=Znf-HX
 gi|6960326|gb|AAB49970.2| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|57208647|emb|CAI40710.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57210059|emb|CAI42674.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57284090|emb|CAI43115.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|119619017|gb|EAW98611.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|119619021|gb|EAW98615.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 2492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|2306809|gb|AAC51657.1| X-linked nuclear protein [Homo sapiens]
          Length = 2375

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1886 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1942

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1943 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1998

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1999 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2052

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2053 TMEDKIYDRQVTKQSLSFRVVD 2074


>gi|38502928|sp|Q7YQM3|ATRX_PONPY RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP
 gi|33354057|dbj|BAC81112.1| ATRX [Pongo pygmaeus]
          Length = 2492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|20336205|ref|NP_612114.1| transcriptional regulator ATRX isoform 2 [Homo sapiens]
 gi|6960328|gb|AAB49971.2| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|57208648|emb|CAB90351.2| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57210060|emb|CAI42675.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57284091|emb|CAI43116.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|119619020|gb|EAW98614.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_d [Homo sapiens]
          Length = 2454

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1965 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2021

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2022 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2077

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2078 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2131

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2132 TMEDKIYDRQVTKQSLSFRVVD 2153


>gi|308174252|ref|YP_003920957.1| RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607116|emb|CBI43487.1| putative RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 617

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
            ++  +   + K   +  +I+K N   +I+   + +    LQ    Q         G   
Sbjct: 409 MDRINQVTQNSKAIQVVDLIQKINDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFK 467

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +++   GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI   
Sbjct: 468 RGKKDWMKDLFRGKVQVLIA-TEAGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI--- 522

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 523 --HRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVV 561


>gi|109131297|ref|XP_001099874.1| PREDICTED: transcriptional regulator ATRX isoform 4 [Macaca mulatta]
          Length = 2490

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2001 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2057

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2058 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2113

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2114 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2167

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2168 TMEDKIYDRQVTKQSLSFRVVD 2189


>gi|1778351|gb|AAB40698.1| putative DNA dependent ATPase and helicase [Homo sapiens]
          Length = 2375

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1886 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1942

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1943 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1998

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1999 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2052

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2053 TMEDKIYDRQVTKQSLSFRVVD 2074


>gi|324501944|gb|ADY40860.1| Helicase ARIP4 [Ascaris suum]
          Length = 1138

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKA---------------FPQGRTLDK------- 96
            II++A      +++       L  +++                + + +T  +       
Sbjct: 770 DIIKQATEIGDKVLLFSQSLLTLNLIERYLEKFGAVCTPNAKITWKKNQTYLRFDGSTPA 829

Query: 97  --DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N+  ++ L      +   G+NL    N ++ F   W+     Q + RI  
Sbjct: 830 IDREKLINRFNDDPQVYLFLISTRAGSLGINL-VAANRVIIFDASWNPCHDAQAVCRI-- 886

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G K+  F+Y L+  N++++ +  R   KS +Q  +++
Sbjct: 887 ---YRYGQKKRTFIYRLVMDNSMEKGIFNRQIGKSGLQQRVVD 926


>gi|297710407|ref|XP_002831879.1| PREDICTED: transcriptional regulator ATRX-like [Pongo abelii]
          Length = 2454

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1965 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2021

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2022 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2077

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2078 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2131

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2132 TMEDKIYDRQVTKQSLSFRVVD 2153


>gi|327265769|ref|XP_003217680.1| PREDICTED: helicase ARIP4-like [Anolis carolinensis]
          Length = 1479

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 96  KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +    I ++N+     + L      +   G+NL  G N +V F   W+     Q +    
Sbjct: 805 ERERLINQFNDPTNTSVSLFLLSTRAGCLGVNL-IGANRVVVFDASWNPCHDAQAV---- 859

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 860 -CRVYRYGQKKPCHIYRLVSDFTLEKKIYDRQISKQGMSDRVVDDL 904


>gi|74137169|dbj|BAE21982.1| unnamed protein product [Mus musculus]
          Length = 995

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
           ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 778 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 831

Query: 65  ------KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PL 111
                 +    P+I    +  +   ++                    +E+N+       L
Sbjct: 832 ASREKTEDKEKPLI----YKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 887

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 888 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 941

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           AQ T+++ +  R  TK ++   +++
Sbjct: 942 AQGTMEDKIYDRQVTKQSLSFRVVD 966


>gi|304314696|ref|YP_003849843.1| helicase domain related protein [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588155|gb|ADL58530.1| helicase domain related protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 774

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQL-----ANGAVYYDEEKHWKEVHDEKIKA 58
           Y   +     +++     +   ++      +L         +  D E+  K   + K+  
Sbjct: 112 YSDLEERRIWEIE----SSLEGSTLADSIPELKAEVSTLEGLIEDAERLLKSGSETKLME 167

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGK 108
           L+ I+E+     I++       +  L +              G ++D+      ++   K
Sbjct: 168 LQKILEEIGHEKILIFSESKDTVDYLLEKIESWGYSVCTIHGGMSMDERIAAEDDFRRNK 227

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +     + G G+NLQ+  +I+V + + W+    +Q + RI      +   +R V +Y
Sbjct: 228 Q--VMVATEAAGEGINLQF-CHIMVNYDIPWNPNRLEQRMGRI-----HRYKQRRDVHIY 279

Query: 169 YLIAQNTIDELVLQRLRTK 187
            L+A NT + LV++RL  K
Sbjct: 280 NLVAGNTREGLVMRRLLEK 298


>gi|281422316|ref|ZP_06253315.1| helicase, Snf2 family [Prevotella copri DSM 18205]
 gi|281403637|gb|EFB34317.1| helicase, Snf2 family [Prevotella copri DSM 18205]
          Length = 805

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 24/178 (13%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFP 89
           +++   + Y  ++K     +D K+     II          ++V   +      + K   
Sbjct: 504 MRMVCDSSYILDQKTR---YDTKVDECVNIISDIISEEGEKVVVFSQWERMTRLIAKELE 560

Query: 90  Q----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +          G   +K    +  + NE    +      +   GLNLQ     ++   L 
Sbjct: 561 KKEIGFEYLHGGVPSEKRKNLVDNFMNEPSSRVFL-STDAGSTGLNLQSAA-TIINIDLP 618

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+    +Q I RI      + G +  + V  L+  ++I++ +L +LR K+++ + +L+
Sbjct: 619 WNPAVLEQRIGRI-----YRLGQQNNIQVINLVTPDSIEQEMLGKLRFKTSMFEGVLD 671


>gi|109131301|ref|XP_001099769.1| PREDICTED: transcriptional regulator ATRX isoform 3 [Macaca mulatta]
          Length = 2452

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1963 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2019

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2020 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2075

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2076 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2129

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2130 TMEDKIYDRQVTKQSLSFRVVD 2151


>gi|323356807|ref|YP_004223203.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
 gi|323273178|dbj|BAJ73323.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
          Length = 719

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       I  +N +  + +      + G GLN+Q   N +V   L W   E  Q I+R
Sbjct: 592 QTSTARQAAIDAFNSDPDVGIAVCSLTAAGVGLNMQAASN-VVLAELSWTAAEQTQAIDR 650

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G +  V  + +IA +TID  + + + +K  +    L+ 
Sbjct: 651 V-----HRIGQEEPVTAWRIIAAHTIDTKIAELIDSKEGLAARALDG 692


>gi|119619019|gb|EAW98613.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_c [Homo sapiens]
          Length = 2446

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2003 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2059

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2060 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2115

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2116 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2169

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2170 TMEDKIYDRQVTKQSLSFRVVD 2191


>gi|1778352|gb|AAB40699.1| putative DNA dependent ATPase and helicase [Homo sapiens]
          Length = 2337

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1848 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1904

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1905 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1960

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1961 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2014

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2015 TMEDKIYDRQVTKQSLSFRVVD 2036


>gi|299470515|emb|CBN78506.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2647

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 95   DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++ +N    K  ++     + G GLNL    + ++ +   W+     Q   R  
Sbjct: 1037 NMRTAAVERFNRPQFKRFVMLLSTRAGGLGLNLTT-ADTVIIYDSDWNPHNDLQAQAR-- 1093

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 + G  +AV VY L+++ T +  +  +   K  +   +L   + E   
Sbjct: 1094 ---AHRIGQTKAVMVYRLLSKKTYEMHMFHQASLKLGLDKAVLAHARSEAQQ 1142


>gi|170058721|ref|XP_001865045.1| transcriptional regulator ATRX [Culex quinquefasciatus]
 gi|167877721|gb|EDS41104.1| transcriptional regulator ATRX [Culex quinquefasciatus]
          Length = 1268

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 99  CTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             I  +N+    +         + G G+NL  G N ++     W+    QQ I RI    
Sbjct: 192 KMITSFNDPSNKRTKCFLISAKAGGQGINL-IGANRVIILDTSWNPSNDQQNIFRIF--- 247

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G KR  +VY L+A  T++E V  R  TK  +   +++
Sbjct: 248 --RLGQKRKCYVYRLLAMGTMEEKVYSRSVTKQAMSFRVVD 286


>gi|74007779|ref|XP_538084.2| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 1 [Canis familiaris]
          Length = 2489

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2000 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2056

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2057 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2112

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2113 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2166

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2167 TMEDKIYDRQVTKQSLSFRVVD 2188


>gi|193084170|gb|ACF09835.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-207-H3]
          Length = 569

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 16/151 (10%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN 105
             I  ++ I+E      ++V  H  S    L ++  +        G++       I  + 
Sbjct: 401 HVIDFVKNIMEIEE--SVVVFCHHISIHKLLHESLQEFNPASIIGGQSDKVRQKNIDYFQ 458

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   LL A   +   G+NL      ++F  L W        + R    R  + G K  V
Sbjct: 459 NGDTKLLIAGLRAGNLGINLTR-AKYVIFAELDW-----VPAVHRQAEDRLHRIGQKNTV 512

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F YYLI + T+DE V   L  KS   D +++
Sbjct: 513 FAYYLIGKRTLDEHVANILVDKSYEIDAIMD 543


>gi|164425263|ref|XP_963002.2| hypothetical protein NCU06190 [Neurospora crassa OR74A]
 gi|157070856|gb|EAA33766.2| predicted protein [Neurospora crassa OR74A]
          Length = 1893

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 81   LARLQKAFPQGRT-LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            L ++      G+T + +    ++E+N    + +      + G GLN+  G N +V F   
Sbjct: 1365 LKKINYRKLDGKTPVSQRQAAVKEFNAVDSLDVYLISTRAGGVGLNI-PGANRVVLFDFG 1423

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   E QQ + R       + G ++ VFVY+L    T +  +      K  + + +++  
Sbjct: 1424 FTPAEEQQAVGR-----AYRIGQEKKVFVYHLKVGGTYETAIHNLAIFKRQLSERVVDKK 1478

Query: 199  KK 200
            K 
Sbjct: 1479 KP 1480


>gi|74007783|ref|XP_860017.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 3 [Canis familiaris]
          Length = 2501

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 2012 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2068

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2069 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2124

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2125 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2178

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2179 TMEDKIYDRQVTKQSLSFRVVD 2200


>gi|46121223|ref|XP_385166.1| hypothetical protein FG04990.1 [Gibberella zeae PH-1]
          Length = 1057

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 54  EKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKD 97
            K+ A   +I    + +    IIV   F      L     +                 K 
Sbjct: 832 AKLTATVEVILTWLQNSPKDKIIVFIEFTITAKALGCILEKLGLKFLYYNQIASTPARKV 891

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  N   I +L A     G GLNLQ   N+++   +W++    QQ   R+      
Sbjct: 892 KAYNEFQNNSDIRILVASIKCGGTGLNLQI-ANLVIIDDIWFNTTVEQQAFGRVN----- 945

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K+   +  ++A+ T+DE ++     K+ I   +L 
Sbjct: 946 RIGQKKETKLVRILARGTLDERLVMLQDAKAAIVSNVLQ 984


>gi|164426466|ref|XP_960853.2| hypothetical protein NCU04229 [Neurospora crassa OR74A]
 gi|157071347|gb|EAA31617.2| hypothetical protein NCU04229 [Neurospora crassa OR74A]
          Length = 1135

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLN+    N +V F   W+     Q        R  + G  R V V+ L
Sbjct: 608 VFLISTKAGGVGLNIT-SANKVVIFDPHWNPSYDLQA-----QDRAYRIGQIRDVDVFRL 661

Query: 171 IAQNTIDELVLQRLRTKSTIQD 192
           ++  TI+E+V  R   K    +
Sbjct: 662 VSAGTIEEIVYARQIYKQQQAN 683


>gi|255556614|ref|XP_002519341.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
           communis]
 gi|223541656|gb|EEF43205.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
           communis]
          Length = 674

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 81/212 (38%), Gaps = 29/212 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQ--LANGAVYYDEEKHWKEVHDEKI 56
           MK+ +   RE   ++    I+A +SA   +++K  +  + N  +Y D  +         +
Sbjct: 431 MKKINALFRE--LEVVKGKIKACSSAEEVESLKFSEKNIIN-KIYTDSAEAKIPG---VL 484

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWN 105
             L  +IE       ++  H    +  + +   + +            + +         
Sbjct: 485 DYLATVIEA--GCKFLIFAHHQPMIDSIHEFLVKKKVGCIRIDGRTPPVSRQSLVTDFQE 542

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I        + G GL L    + ++F  L W   +  Q  +R       + G   +V
Sbjct: 543 KDAIKAAVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDR-----AHRIGQVSSV 596

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +YYL+A +T+D+++   +++K      +L+ 
Sbjct: 597 NIYYLLANDTVDDIIWDVVQSKLENLGQMLDG 628


>gi|238506885|ref|XP_002384644.1| helicase, putative [Aspergillus flavus NRRL3357]
 gi|220689357|gb|EED45708.1| helicase, putative [Aspergillus flavus NRRL3357]
          Length = 602

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 73/176 (41%), Gaps = 18/176 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII---VAYHFNSDL 81
           +++K VK  ++  G +  + +     +  + +  L ++    N    +   V+ +   +L
Sbjct: 392 TSAKLVKIQEIVKGWIDENPDVKIV-IFTQFLDFLRLVGLMCNKEKWVATSVSSNLRHNL 450

Query: 82  ARLQKAFPQGRT-------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             +       RT       L     ++ ++ +E ++ +L A   + G GL++    N  +
Sbjct: 451 PLIHGGSAANRTQLHGKLSLQAREQSMDKFRDEKEVRILIASLKAGGIGLDMSM-ANKCI 509

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              LWW+    QQ   R+      + G  + V    +I +++IDE +L+    K+ 
Sbjct: 510 LVDLWWNEAIQQQAFCRL-----YRIGQSKDVEFVKIIIKDSIDEYLLKMQTRKTA 560


>gi|193678803|ref|XP_001948361.1| PREDICTED: transcription termination factor 2-like isoform 1
            [Acyrthosiphon pisum]
 gi|328713458|ref|XP_003245082.1| PREDICTED: transcription termination factor 2-like isoform 2
            [Acyrthosiphon pisum]
          Length = 1133

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 30/217 (13%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEK-----IK 57
                 +      G             K  +++ G   +  D  K+   + +EK     IK
Sbjct: 900  KNMLEDECLKTDGIQNNGD--LDIVDKLSRMSIGIPNIENDTVKNSNVIFNEKWISSKIK 957

Query: 58   ALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEW 104
            A+  ++++         ++   + S L  + K   Q     +              I E+
Sbjct: 958  AVCDMVKEKVLHTDDKAVIVSQWPSVLNLVNKQLSQYNVKTEIFSGAVPVLLRNKIISEF 1017

Query: 105  NE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++  G   +L     + G GLNL    N L    + W+ +   Q  +RI      + G +
Sbjct: 1018 DKVRGGPKILLLSLTAGGVGLNLVV-ANHLFLVDIHWNPQLEAQACDRI-----YRVGQQ 1071

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + V VY  I  NTI+  + +    K  I + +    +
Sbjct: 1072 KPVNVYKFICDNTIESSIQKIQTQKLEIANNIFGGSR 1108


>gi|189203985|ref|XP_001938328.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985427|gb|EDU50915.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1118

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 67   NAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE--WNEGKIPLLFAH 115
            N    +V   F S         D   +      G T  ++  ++ +  + +  I L    
Sbjct: 915  NGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIQERQSLMDVFYQDESIQLFMIS 974

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              S G G+NL    N ++ F   ++ ++  Q        R  + G  R V V  L+ ++T
Sbjct: 975  TKSGGAGINL-ACANKVIIFDSSFNPQDDIQA-----ENRAHRVGQTREVEVVRLVTKDT 1028

Query: 176  IDELVLQRLRTKSTIQDLL 194
            ++E +     +K  +  ++
Sbjct: 1029 VEEQIYALGVSKLELDKMV 1047


>gi|74007787|ref|XP_860092.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 5 [Canis familiaris]
          Length = 2460

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1971 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2027

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2028 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2083

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2084 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2137

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2138 TMEDKIYDRQVTKQSLSFRVVD 2159


>gi|8777308|dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1053

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           V  D+ +   +    K+  +  +++   +      Y F     R+         L     
Sbjct: 705 VDTDDFQTKNDSISCKLSFIMSLLDSLTSNG----YSFL----RIDGTTKAPDRL----K 752

Query: 100 TIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           T++E+ EG + P+        G GL L    + ++     W+     Q ++R       +
Sbjct: 753 TVEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYR 806

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G  + V VY L+   T++E + ++   K  +
Sbjct: 807 IGQTKDVIVYRLMTSATVEEKIYRKQVYKGGL 838


>gi|308273413|emb|CBX30015.1| hypothetical protein N47_D28240 [uncultured Desulfobacterium sp.]
          Length = 928

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 76/213 (35%), Gaps = 45/213 (21%)

Query: 1   MKQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------ 51
           +K+  KF+ E+     D+     EA  +             A   DEEK  KE+      
Sbjct: 456 LKKRPKFEEEVTHWALDVMESEDEAIEA------------DANIPDEEKKVKELIDLVDE 503

Query: 52  -HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF------------PQGRTL 94
             D K   L   IE    +     +I+   +   L  L++                G   
Sbjct: 504 KADRKFDTLIRAIEQIRRENKNDKMIIFTQYLETLYYLKEELGKYYPPEKIAILKGGPLE 563

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK       W+E          ++ G G+NLQ    +L  + L W+    +Q I RI   
Sbjct: 564 DKIASCESFWDESGAQ-FLISTSAGGEGINLQV-CRLLFNYDLPWNPMAVEQRIGRI--- 618

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G      VY L+A+ TI+E V + L  K
Sbjct: 619 --HRYGQTETAQVYNLVAEETIEEQVYKILEEK 649


>gi|297279766|ref|XP_001087747.2| PREDICTED: DNA repair and recombination protein RAD54-like, partial
           [Macaca mulatta]
          Length = 185

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
            +++  ++   L   +K                ++ K    ++ +N    P  +      
Sbjct: 74  KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 133

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           + G GLNL  G N LV F   W+    +Q + R+      + G K+  ++Y L++
Sbjct: 134 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVW-----RDGQKKTCYIYRLLS 182


>gi|1778307|gb|AAB49969.1| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|1778353|gb|AAB40700.1| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|225356534|gb|AAI56297.1| Alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [synthetic construct]
          Length = 2288

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1799 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1855

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1856 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1911

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1912 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 1965

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 1966 TMEDKIYDRQVTKQSLSFRVVD 1987


>gi|17538806|ref|NP_501545.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-26) [Caenorhabditis elegans]
 gi|3874525|emb|CAA90984.1| C. elegans protein C27B7.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1274

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 59  LEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------------------- 97
           LE++ E       I++     + L  L++   + +   KD                    
Sbjct: 783 LEILDESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTS 842

Query: 98  ----PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  I  +N E  + L      +   G+NL    N  +     W+     Q +    
Sbjct: 843 GADREKLINRFNSEPGLSLFLISTRAGSLGINL-VSANRCIIIDACWNPCHDAQAV---- 897

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             R  + G ++  FVY LI  N+++  +  R  +K  +Q  +++  + + 
Sbjct: 898 -CRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDA 946


>gi|238594429|ref|XP_002393482.1| hypothetical protein MPER_06777 [Moniliophthora perniciosa FA553]
 gi|215461019|gb|EEB94412.1| hypothetical protein MPER_06777 [Moniliophthora perniciosa FA553]
          Length = 207

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
              K+  L   I K        I    + S L  ++K F +                   
Sbjct: 45  PSTKMLKLIDYISKWETIGDKTICYSQWTSMLDLIEKLFSRYGIRSVRFDGKMDRTSREQ 104

Query: 100 TIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +     P ++       G GLNL    N ++   + W+     Q  +R       +
Sbjct: 105 ALSTFKSPTGPKVILISTKCGGVGLNL-VAANRVINMDVSWNFAAESQAYDR-----AHR 158

Query: 159 AGFKRAVFVYYLIAQNTIDELVL 181
            G ++ V++  L+  NTI+E +L
Sbjct: 159 IGQEKNVYIKRLVVANTIEERML 181


>gi|221481667|gb|EEE20043.1| DNA excision repair protein ERCC6, putative [Toxoplasma gondii GT1]
          Length = 1553

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 39/177 (22%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------------------------ 86
              K+  L  ++   KA    +++       L  LQ+                        
Sbjct: 1020 SGKLIVLREVLRVWKAEGRRVLLFAQTVQMLDILQRFLETCDPSVPSSSSSAPSSTIGGK 1079

Query: 87   ------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      G  +      +  +     I  L       G GLNL    + +V F   W
Sbjct: 1080 KGFSFLRLDGGVPVASRHAIVDSFQRDSSIFALLLTTRVGGVGLNLT-AADRVVIFDPDW 1138

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     Q  ER       + G  + V +Y L+   +++E V  R   K  +   +L 
Sbjct: 1139 NPMTDMQARERSW-----RIGQSKDVCIYRLLTSGSVEEKVYHRQVFKFFLSQKVLQ 1190


>gi|237832233|ref|XP_002365414.1| DNA excision repair protein, putative [Toxoplasma gondii ME49]
 gi|211963078|gb|EEA98273.1| DNA excision repair protein, putative [Toxoplasma gondii ME49]
          Length = 1555

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 39/177 (22%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK------------------------ 86
              K+  L  ++   KA    +++       L  LQ+                        
Sbjct: 1032 SGKLIVLREVLRVWKAEGRRVLLFAQTVQMLDILQRFLETCDPSVPSSSSSAPSSTLGGK 1091

Query: 87   ------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      G  +      +  +     I  L       G GLNL    + +V F   W
Sbjct: 1092 KGFSFLRLDGGVPVASRHAIVDSFQRDSSIFALLLTTRVGGVGLNLT-AADRVVIFDPDW 1150

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     Q  ER       + G  + V +Y L+   +++E V  R   K  +   +L 
Sbjct: 1151 NPMTDMQARERSW-----RIGQSKDVCIYRLLTSGSVEEKVYHRQVFKFFLSQKVLQ 1202


>gi|297304199|ref|XP_001099671.2| PREDICTED: transcriptional regulator ATRX isoform 2 [Macaca mulatta]
          Length = 2338

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1849 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1905

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1906 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1961

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1962 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2015

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2016 TMEDKIYDRQVTKQSLSFRVVD 2037


>gi|74007791|ref|XP_860168.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 7 [Canis familiaris]
          Length = 2433

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1944 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 2000

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 2001 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2056

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2057 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2110

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2111 TMEDKIYDRQVTKQSLSFRVVD 2132


>gi|15320696|ref|NP_203208.1| GTA [Epiphyas postvittana NPV]
 gi|15213164|gb|AAK85603.1| GTA [Epiphyas postvittana NPV]
          Length = 501

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 32/213 (15%)

Query: 10  ELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYD------------EEKHWKEVHDEKI 56
           ++  +  G+++ +     S   +  Q+                    E  +        +
Sbjct: 280 DVAVETDGKDLNSMQDVLSLLCRLRQMCCHPALTKCAHMFESHANIFEPTYASSKCQRVL 339

Query: 57  KALEVIIEKANAAPIIVAYH--FNSDLARLQKAFPQGRTLDKDPCTIQE-------WNEG 107
           + ++ ++   N   ++V+    F   +A L +       L      ++E       +N  
Sbjct: 340 ELIQQVLNTDNDKIVLVSQWVEFLHIIAALLRRHEILILLYTGKQRVEERIAVENQFNAA 399

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             P  +L       G GLNL  GGN +V     W+ +   Q   RI      + G K+  
Sbjct: 400 NSPYRVLLMSIKCGGVGLNL-IGGNHIVVLEPHWNPQIELQAQNRI-----HRLGQKKQT 453

Query: 166 FVYYLI--AQNTIDELVLQRLRTKSTIQDLLLN 196
           +VY ++    N+++  +  R   K T  + + +
Sbjct: 454 YVYKMLHDEDNSVERYMKTRQDNKLTFVNKVFD 486


>gi|325848756|ref|ZP_08170266.1| SNF2 family N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480400|gb|EGC83462.1| SNF2 family N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 478

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 28/202 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK--------IKALEVIIEKANAA 69
            + +             +  G +Y   +K +      K        +KA   IIE+    
Sbjct: 250 NDWKPETIYRLFNILQGITAGFIYNMTDKGYIYKTGYKDTPETNYRLKAFMDIIEEFQGK 309

Query: 70  PIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCT------IQEWNEGKIPLLFAHPA 117
            +IV   +  +   +     +          D    T      I+ +  G    L A+ +
Sbjct: 310 -VIVYCQYQIEAKTIVDLLNKNYGENSAVLFDGTINTKQRNLNIERFRNGS-RFLVANKS 367

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G  LNLQ+  N +++++  WD    +Q  +RI      + G +   +   +I   T++
Sbjct: 368 CAGFSLNLQF-CNQIIYYNNDWDYGTREQSEDRIN-----RIGQEYKCYYLDIICAGTVE 421

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E ++  L  K  + +  L  LK
Sbjct: 422 EYIMDCLSKKEALGNRFLKELK 443


>gi|298705202|emb|CBJ28633.1| SNF2 helicase [Ectocarpus siliculosus]
          Length = 2420

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 54   EKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-------LDKDPCTIQEWN 105
             KI AL   I+    +   +V   ++  L  ++ AF +           ++    ++ + 
Sbjct: 2106 TKITALVGDILALGPSDKCLVFSQWDDMLDIVELAFKENGVSYARMKGKNRSELALEAFR 2165

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             EG    L     +  HGLNL    N +       +     Q + R+      + G  R 
Sbjct: 2166 AEGGPRALMLPIKTGSHGLNLVE-ANHVFLLEPLLNAAVEAQAVNRV-----HRGGQTRP 2219

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              ++  I + TI+E + +  + K+++ 
Sbjct: 2220 TTIHRFIVRGTIEEDIERLRKKKTSLA 2246


>gi|281210112|gb|EFA84280.1| hypothetical protein PPL_03357 [Polysphondylium pallidum PN500]
          Length = 1494

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 18/150 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT--IQEWNEGKIPLLFAH 115
                 +V  H    L  L+++            G T  +   T   +  N  K  +    
Sbjct: 892  ENKKFLVFAHHTDILDGLERSIKSTGTGYMRIDGSTPAEARQTYVTRFQNSDKCRVALLS 951

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GL L    +++VF  L+W     +Q  +R+      + G +  V ++YLI +NT
Sbjct: 952  ITAAGTGLTLT-ASSLVVFVELYWTPGVLRQAEDRV-----HRIGQREDVHIHYLIGKNT 1005

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +D+ +   +  K  +    L+  ++E +H 
Sbjct: 1006 LDDKMWPTICNKLEVLGETLDG-QEEILHT 1034


>gi|120603977|ref|YP_968377.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|120564206|gb|ABM29950.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
          Length = 1131

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 27/159 (16%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTL--------DKDPCTIQE 103
            + L  I  ++     +V              LQ+ F   + L         K    +  
Sbjct: 806 FELLTDI--RSKGEKALVFVEVKHMQMILAELLQQRFDCEQVLIINGEVSGPKRQERVHA 863

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   K    +   P + G GL L    + ++  + WW+     Q  +R       + G +
Sbjct: 864 FQTRKGFDAILLSPKAAGVGLTLTAATH-VIHLNRWWNPAVEDQCTDR-----AYRIGQQ 917

Query: 163 RAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLLL 195
             V V+Y +A +      + D  + + L  K ++   LL
Sbjct: 918 HDVTVHYPMAIHPQLGDASFDVKLHELLERKRSLSRDLL 956


>gi|74007789|ref|XP_860124.1| PREDICTED: similar to transcriptional regulator ATRX isoform 2
            isoform 6 [Canis familiaris]
          Length = 2395

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1906 KDFVTDADAEILEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1962

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1963 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 2018

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 2019 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 2072

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 2073 TMEDKIYDRQVTKQSLSFRVVD 2094


>gi|295695376|ref|YP_003588614.1| helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295410978|gb|ADG05470.1| helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 572

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 17/151 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEWNEG- 107
            K++    ++ + +   +IV   + +    L     +                ++W +  
Sbjct: 363 TKVETTIDLVNQIHDK-VIVFTEYRASQDFLLYMMKRRGIPAVPFRGGFQRGKKDWMKDI 421

Query: 108 ---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  ++ A   + G GLNLQ+  N ++ F L W+    +Q I RI      + G  R 
Sbjct: 422 FSKRAQVMVA-TEAGGEGLNLQF-CNQIINFDLPWNPMRVEQRIGRI-----HRLGQTRD 474

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VF++ L   +TI++ +++ L+ K  + +L++
Sbjct: 475 VFIHNLATADTIEQYIVELLQEKIRLFELVI 505


>gi|320032945|gb|EFW14895.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1057

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALEV----IIEKANAAP------IIVAYHFNSDLARLQ-----------KAF 88
            E    K KAL       +E++   P       +V   + S L  ++              
Sbjct: 873  EGPHTKTKALISHLLGTVEESKHKPDQPPIKSVVFSSWTSHLDLIEIALQDNGIRGFTRL 932

Query: 89   PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 L +    + ++ + + I +L A   + G GLNL     + +     ++     Q 
Sbjct: 933  DGTMALKQRNVALDKFRDDENITVLLATLGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 991

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     I + +I+E + +  + K  + ++ LN  K +   +
Sbjct: 992  VDRV-----HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREM 1044


>gi|238588586|ref|XP_002391769.1| hypothetical protein MPER_08754 [Moniliophthora perniciosa FA553]
 gi|215456891|gb|EEB92699.1| hypothetical protein MPER_08754 [Moniliophthora perniciosa FA553]
          Length = 311

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 51  VHDEKIKAL-EVIIEKANAAP-------IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
           +   K+KA+ E I   A   P       + +A  + ++   L   +       K    ++
Sbjct: 149 LPSTKMKAMMEEITRLAKDKPDEKWTGCLSLASDYLTEYGILHVKYQGDMNRVKRDQAVR 208

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + ++ K P++       G GLNL    N ++   L W      Q +E     R  + G 
Sbjct: 209 VFMSKDKAPIMLMSMKCGGVGLNLTRANN-VISLDLGWS-----QAVENQAFDRVHRLGQ 262

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R V +   + +NT+++ +L     K  + D
Sbjct: 263 TRTVNIKRFVIKNTVEDRILVLQDRKQQLAD 293


>gi|303322649|ref|XP_003071316.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240111018|gb|EER29171.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1057

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALEV----IIEKANAAP------IIVAYHFNSDLARLQKAFPQGRT------ 93
            E    K KAL       +E++   P       +V   + S L  ++ A            
Sbjct: 873  EGPHTKTKALISHLLGTVEESKHKPDQPPIKSVVFSSWTSHLDLIEIALQDNGIRGFTRL 932

Query: 94   -----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 L +    + ++ + + I +L A   + G GLNL     + +     ++     Q 
Sbjct: 933  DGTMALKQRNVALDKFRDDENITVLLATLGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 991

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     I + +I+E + +  + K  + ++ LN  K +   +
Sbjct: 992  VDRV-----HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREM 1044


>gi|297835518|ref|XP_002885641.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331481|gb|EFH61900.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1122

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
            K    V+ + I  L++I+E+ +    +V      +   +     +    D+    I  +N
Sbjct: 933  KEKVLVYSQYIDTLKLIMEQLS----LVFSWK--EGEEILFMHGKVEQRDRQ-HLIDNFN 985

Query: 106  EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      +L A   +C  G++L  G + +V   + W+     Q I R       + G KR
Sbjct: 986  KPDSGSKVLLASTKACSEGISL-VGASRVVILDVVWNPSVESQAISR-----AFRLGQKR 1039

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            AVF+Y+L+ ++T +     +   K  I +L+ ++
Sbjct: 1040 AVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSS 1073


>gi|170585925|ref|XP_001897732.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158594834|gb|EDP33412.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1150

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 32/205 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAP 70
             NI   +  + T K L         D  K  +++        KIK L   ++ A      
Sbjct: 890  SNISLLDEKALTEKLL-------GEDGNKQMEQLFQKTFISTKIKKLFEQVDYALSCGDK 942

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL----DKDPCTIQEWNEGKIP--------LLFAHPAS 118
             ++   + S L  L+    + + L    +    +    N             ++     +
Sbjct: 943  CVIVSQWTSLLNILEYHLERKKILYTSINGKVSSSDRQNRANSFNMMDSGPHVMLLSL-T 1001

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G       GGN L    L W+    QQ  +RI      + G  + VF++ L+   TI+E
Sbjct: 1002 AGGVGLNLVGGNHLFLVDLHWNPALEQQACDRI-----YRIGQTKNVFIHKLVCLETIEE 1056

Query: 179  LVLQRLRTKSTIQDLLLNALKKETI 203
             VL   R K T+   +L+ +  + +
Sbjct: 1057 RVLALQRIKQTLAKDVLDGVASKKL 1081


>gi|159480254|ref|XP_001698199.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158273697|gb|EDO99484.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 797

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 32/155 (20%)

Query: 67  NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDP-----CTIQEWNEGK----- 108
               +++    +     L         +  P  R     P       I ++  G+     
Sbjct: 560 GGHRVLIFSQVSQMTEMLNVLEAYLEDRGIPAARLDGSVPWQQRMTDIADFQVGQSGTAA 619

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ-------MIERIGVTRQRQAG 160
              +      + G G+NL    + ++ +   W+  +  Q        ++R       + G
Sbjct: 620 AKDVFLLSTRAGGLGINLT-AADTVIIYDSDWNPHQDSQHPPPPPQAMDRC-----HRIG 673

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V V+ L+  N++   +L R  +K  ++ +++
Sbjct: 674 QSRPVLVFRLVTANSVGCRMLARAESKKALERIVI 708


>gi|123407009|ref|XP_001302911.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121884245|gb|EAX89981.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 2169

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPC-TIQEW--NEGKIPLLFA 114
               +++       L  L++             G   +++    I ++  N G   +   
Sbjct: 567 QGRSVLIFSQKVKVLKLLEEYCQLKRYTYEILNGNLSEQEKKEAISKFCDNSGDAFIFLI 626

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S   GLNL    N+ + F   W+ +   Q + R       + G  + V V  L+   
Sbjct: 627 STRSGAEGLNLTR-ANVTIVFDPDWNPQNDIQALGRC-----HRIGQTQKVDVIRLLTFG 680

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T +  +  R + K  + + +L   K
Sbjct: 681 TYEHEMYIRSQRKLKLWNSILGDGK 705


>gi|328849333|gb|EGF98516.1| hypothetical protein MELLADRAFT_95635 [Melampsora larici-populina
           98AG31]
          Length = 177

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           ++      T ++         +  +        + G GLN+    + +      W+ +  
Sbjct: 36  RQLHGDQSTFERTSQLNSFTKDPNVEAFVVSIEAGGVGLNMTC-ADEVYLMDAHWNPQVV 94

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           QQ ++R+      + G  + V V++++   +I++ +    + K+ +   ++
Sbjct: 95  QQAVDRL-----HRIGQAKPVRVFHVVTGQSIEQHLYNVQKRKAALAKRVI 140


>gi|307176622|gb|EFN66090.1| Transcriptional regulator ATRX [Camponotus floridanus]
          Length = 2405

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N ++ F   W+     Q I RI      + G K+  ++Y  
Sbjct: 2038 LFLISTRAGGLGINLT-AANRVIIFDASWNPSHDVQSIFRI-----YRFGQKKPCYIYRF 2091

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  T++E +  R  TK ++   +++
Sbjct: 2092 LAAGTMEEKIYNRQVTKLSLSCRVVD 2117


>gi|68075977|ref|XP_679908.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500750|emb|CAH98546.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 528

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T+++     +      + +      + G GLNL    N ++     W+        +R  
Sbjct: 445 TIERQQIIKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQA 498

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R  + G K+ V++Y L  +NTI+E VL+
Sbjct: 499 EDRVHRLGQKKEVYIYRLCCKNTIEETVLK 528


>gi|156101331|ref|XP_001616359.1| helicase [Plasmodium vivax SaI-1]
 gi|148805233|gb|EDL46632.1| helicase, putative [Plasmodium vivax]
          Length = 877

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 34  QLANGAVYYDEEKHWKEVHD------EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
           Q A+G     +E++    H        K+KA++  I          ++  H    +  + 
Sbjct: 590 QTASGIPNRGDEENVSISHLFKMTGYAKVKAIKEYITYLIDADIKFLLFCHHKLVMDEID 649

Query: 86  KAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
               + +T          ++K    I+ +     + +      +CG GLNL    N +VF
Sbjct: 650 DFLREKKTMFIRVDGLTPIEKREVYIKSFQNDDHVKIALLSLTACGIGLNLT-AANTVVF 708

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDL 193
             L+W   +  Q  +R       + G    V  ++YLIAQNTIDE+V + +  K      
Sbjct: 709 GELYWVPGQIIQAEDR-----AHRIGTTHEVVNIHYLIAQNTIDEIVWKIINRKWNTLTT 763

Query: 194 LLNALK 199
            LN ++
Sbjct: 764 ALNGME 769


>gi|282852065|ref|ZP_06261423.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
 gi|282556825|gb|EFB62429.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
          Length = 424

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA---FPQGRTL------DKDPCT 100
             +KI+ +  I   ++     +IV   F + + +L K    F     +      ++    
Sbjct: 229 DSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQRQEV 288

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++       +L     + G GLN+Q   N ++     W      Q I R       + 
Sbjct: 289 IDKFSENPNQNVLLVQIDAGGFGLNIQ-AANRVILCEPQWKPSTENQAISR-----AYRM 342

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 343 GQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 375


>gi|302680130|ref|XP_003029747.1| hypothetical protein SCHCODRAFT_58967 [Schizophyllum commune H4-8]
 gi|300103437|gb|EFI94844.1| hypothetical protein SCHCODRAFT_58967 [Schizophyllum commune H4-8]
          Length = 939

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 36/165 (21%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLA-----RLQKAFPQGRTL-- 94
           ++    +     KI  L  +++    A   +V   F S L      R  +  P  R    
Sbjct: 783 EDRTGIRAGSSAKIDQLVKLLQLNPPADKSLVFSQFTSFLDKVSCQRWMRCIPYVRFDGQ 842

Query: 95  ---DKDPCTIQEWNEGKIP----------------LLFAHPASCGHGLNLQYGGNILVFF 135
               +    I+ ++    P                ++     +   GLNL    N+    
Sbjct: 843 MSGKRREEAIRRFSVPIKPTDTAASNWLPGGVNPKVMLISLKAGALGLNLTVANNVY--- 899

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            LWW      Q I+R+      + G  + V VY +IA++T++  V
Sbjct: 900 -LWWQEGIESQAIDRVN-----RIGQTKPVHVYQMIAEDTVESKV 938


>gi|167757932|ref|ZP_02430059.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
 gi|167664364|gb|EDS08494.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
          Length = 470

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 16/149 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------KDPCTIQEWN 105
            + +IK L  I+ +      I+   + S++ ++ +  P     D      K    ++ + 
Sbjct: 291 DNPRIKMLMNILAE---EKTIIFCRYESEIEQICRIIPGAVRFDGKVPQRKRDIALRRF- 346

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G    L A+    G  LNLQ+  + +++ S  WDL +  Q  +R+      + G    V
Sbjct: 347 AGDSDYLIANRNCAGFSLNLQF-CHNIIYMSNDWDLGKRMQSEDRV-----HRLGQGHDV 400

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           ++  + A+NTIDE +L+ L  K  I + +
Sbjct: 401 YITDICAENTIDEQILKCLSRKENILECI 429


>gi|115384256|ref|XP_001208675.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196367|gb|EAU38067.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1181

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 63   IEKANAAPI--IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGK- 108
            ++ A   P+  +V   + S L  ++ A                 L      + E++    
Sbjct: 1018 LQAAGERPLKSVVFSAWTSHLDLIEIALKDNGLTGYTRLDGTMALAARNKALAEFHSNDT 1077

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +L A   + G GLNL     + +     ++     Q I+R+      + G  R V   
Sbjct: 1078 ITVLLATIGAGGVGLNLTAASKVYIM-EPQYNPAAVAQAIDRV-----HRIGQTREVTTV 1131

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + + +I+E + +  + K  + DL +N  K +   V
Sbjct: 1132 QYLMKGSIEEKIFELAKKKQQLADLSMNRGKLDKKEV 1168


>gi|317126457|ref|YP_004100569.1| helicase [Intrasporangium calvum DSM 43043]
 gi|315590545|gb|ADU49842.1| helicase domain protein [Intrasporangium calvum DSM 43043]
          Length = 726

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T  +    +  +  + ++ +      + G G+NL +  + +V   L W   E QQ I+R
Sbjct: 601 QTAKQRQEAVDAFQKDPEVSVAVCSLLAAGVGVNL-HASSNVVLSELSWTAAEQQQAIDR 659

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G    V  + ++A  T+D  + + +  K  +    L+ 
Sbjct: 660 V-----HRIGQDEPVTAWRILAAGTVDSRIAELIDAKQGLAARALDG 701


>gi|331226481|ref|XP_003325910.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309304900|gb|EFP81491.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1449

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 72   IVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWN-------EGKIPLLFAHPASCG 120
            +V   +   L ++  AF     Q + LD      +          + K  +L     + G
Sbjct: 1293 VVFSQWTKLLDKIASAFDEFNIQYKKLDGTMSRAERNRSMEALKADPKCEVLLVSLRAGG 1352

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL      +     +W+     Q ++R+      + G  + V +   I   ++++ +
Sbjct: 1353 VGLNLTC-AQRVYLMEPFWNPAVENQAVDRV-----HRLGQTKPVRMIRYIISGSVEQNM 1406

Query: 181  LQRLRTKSTIQDL 193
            L+  + K+ + ++
Sbjct: 1407 LEIQKRKTELANM 1419


>gi|294933433|ref|XP_002780713.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890749|gb|EER12508.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 318

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 30/174 (17%)

Query: 48  WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
           W++  + KI A++  ++    N   ++V  H  S L +L++       +           
Sbjct: 91  WRKTGEAKIGAVKDYLDYLLDNDCKMLVFAHHRSMLDKLEEKVEGILHIKGSSAGKNFGL 150

Query: 96  ----------KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     K P  ++++ E   I +      +C  GL L    +++VF  L+W     
Sbjct: 151 IRIDGQTPQTKRPELVKKFQEDDDIRVAVLSITACSEGLTLT-AASVVVFAELYWVPGTI 209

Query: 145 QQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q   R+      + G  ++   ++YLIA+ + DE V   L+ K      +LN 
Sbjct: 210 EQAEARV-----HRIGQTKSCVDIHYLIARGSPDEAVYACLKRKKEDTSAILNG 258


>gi|28278071|gb|AAH39796.1| Hltf protein [Mus musculus]
          Length = 163

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE---GKIPLLFAHPAS 118
           +V   F + L+ ++        +           K   +IQ +     G   ++     +
Sbjct: 9   LVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKA 68

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    + +      W+     Q  +R       + G K+ V +   I +++++E
Sbjct: 69  GGVGLNL-CAASRVFLMDPAWNPAAEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEE 122

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +L+   TK  +        K + 
Sbjct: 123 NMLKIQNTKRDLAAGAFGTKKTDA 146


>gi|322830276|gb|EFZ33358.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1114

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KAN 67
           E + + + +  +  +  +K  +   ++         +        K++ L+ ++   +  
Sbjct: 760 EYFDNDEEDETDGVDGKTKRRRGSHMS-----LRSNRLVNYSGSGKLQTLQKLLTVWQRG 814

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPA 117
              ++V       L  ++    Q                    +  +NE    +      
Sbjct: 815 GQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQELMDRFNEDDSIVAALLTT 874

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G       G N +V F   W+    +Q  ER       + G  R V VY LIA  T++
Sbjct: 875 RVGGVGVNLVGANRVVLFDPDWNPVTDEQARERAW-----RIGQTRDVGVYRLIASGTVE 929

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L+R   K+ + + +L
Sbjct: 930 EAILRRQLAKTYVTEKVL 947


>gi|322788045|gb|EFZ13883.1| hypothetical protein SINV_02167 [Solenopsis invicta]
          Length = 159

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 87  AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                 T+ +   TI ++N        +        G G+NL  G N ++ +   W+   
Sbjct: 18  RMDGTTTMSQRQQTIHKFNNVHDTSYFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPAT 76

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             Q  ER       + G  + V  Y LI   TI+E +L  L  K
Sbjct: 77  DAQAKERAW-----RIGQNKQV--YRLITAGTIEEKLL--LSNK 111


>gi|148273304|ref|YP_001222865.1| putative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831234|emb|CAN02189.1| putative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 711

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+ ++ ++     + G GLNLQ   N +V   L W   E  Q I+R+      + G +
Sbjct: 596 FQNDPEVKVVVCSLTAAGVGLNLQAASN-VVLAELSWTSAEQTQAIDRV-----HRIGQE 649

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +IA  TID  + + + +K+ +    L+ 
Sbjct: 650 EPVTAWRIIAAQTIDAKIAELIDSKAGLAARALDG 684


>gi|115438126|ref|XP_001217986.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114188801|gb|EAU30501.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1735

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT--LDKDPCTIQEWN 105
            L+ II+K+      ++V  H    L  +         +     G+T  + +   T +   
Sbjct: 1344 LDKIIDKSVRAGDKVLVFSHTLPTLDYIEHVLQQSNRKYCRLDGKTPVVSRQAATKKFNT 1403

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  + +      + G GLN+  G N ++ +   +     +Q I R       + G  + V
Sbjct: 1404 DANLEVYLISTRAGGLGLNI-PGANRVIIYDFSFSPFWEEQAIGR-----AYRLGQVKPV 1457

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +VY  I+  T +E++  +   K+ +   +++
Sbjct: 1458 YVYRFISGGTFEEVMYNKALFKTQLAHRVVD 1488


>gi|60544834|gb|AAX22755.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
          Length = 698

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 28/120 (23%)

Query: 99  CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+++++ K    +      + G G+NL    +  + +   W+ +   Q ++R      
Sbjct: 549 TSIKDFSDEKSSCSIFLLSTRAGGLGINLT-AADTCILYDSDWNPQMDLQAMDRC----- 602

Query: 157 RQAGFKRAVFVYYLIAQ--------------------NTIDELVLQRLRTKSTIQDLLLN 196
            + G  + V VY L                       NT +E +L  L+   T +D L+ 
Sbjct: 603 HRIGQTKPVHVYRLSTAQSIEIHLLSTKSPIDSLNQINTQEEDILALLKEDETAEDKLIQ 662


>gi|145551825|ref|XP_001461589.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429424|emb|CAK94216.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1225

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 20/178 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKAL--EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT- 93
            + ++   E K  K     KI A+  E    +      ++   +   +  L++ F + +  
Sbjct: 1036 SNSIEVQEIKETKWGPSSKILAVVNETKKVQLKREKCLIFTQWIQMIRLLEEKFQEEQIW 1095

Query: 94   ---------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     +++    IQ +     I  L     +   GLNL    N +     WW+   
Sbjct: 1096 CQVVTGAMSVEQRNKVIQSFEQHPSITALILSLRATSTGLNLTM-ANHVFLVDPWWNPAI 1154

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV-LQRLRTKSTIQDLLLNALKK 200
              Q I R       + G K+ V V   +  NTI+E + L   + K  I+ ++ N  KK
Sbjct: 1155 EDQAIGR-----ADRIGQKKQVNVIRFLCANTIEEKINLLHQKKKKMIRKVIANEQKK 1207


>gi|134056267|emb|CAK96395.1| unnamed protein product [Aspergillus niger]
          Length = 1151

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +V   + S L  ++ A                    +     +  N   I +L A   + 
Sbjct: 999  VVFSAWTSHLDLIEIALRDHDITGFTRLDGTMSLAARSKALEELHNNPDITVLLATIGAG 1058

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL     + +     ++     Q ++R+      + G  R V     + + +I+E 
Sbjct: 1059 GVGLNLTAASKVYIM-EPQYNPAAVAQAVDRV-----HRIGQTREVTTVQFLMKGSIEEK 1112

Query: 180  VLQRLRTKSTIQDLLLNALKKETIHV 205
            + +  + K  + DL LN  K +   V
Sbjct: 1113 IFELAKKKQQLADLSLNRGKLDKKEV 1138


>gi|74183379|dbj|BAE36571.1| unnamed protein product [Mus musculus]
          Length = 916

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIE- 64
           ++   D   E +E         + L++A      +E      V  + +     +E  +E 
Sbjct: 652 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 705

Query: 65  ------KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PL 111
                 +    P+I    +  +   ++                    +E+N+       L
Sbjct: 706 ASREKTEDKEKPLI----YKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRL 761

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +
Sbjct: 762 FIISTKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFL 815

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           AQ T+++ +  R  TK ++   +++
Sbjct: 816 AQGTMEDKIYDRQVTKQSLSFRVVD 840


>gi|326927740|ref|XP_003210048.1| PREDICTED: helicase ARIP4-like [Meleagris gallopavo]
          Length = 1470

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 37/178 (20%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------------------- 90
           +  K+  L  ++E++      I+V     S L+ +++   +                   
Sbjct: 726 NSPKMVLLFHLVEESVKLGDKILVFSQSLSTLSVIEEFLAKRPMPSPPGSDGIHNWVRNI 785

Query: 91  ------GRT-LDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                 G T   +    I ++N+     + L      +   G+NL  G N +V F   W+
Sbjct: 786 SYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNL-IGANRVVVFDASWN 844

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                Q +      R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 845 PCHDAQAV-----CRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDL 897


>gi|71410996|ref|XP_807766.1| DNA excision repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871837|gb|EAN85915.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1118

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCT 100
             K++ L+ ++   +     ++V       L  ++    Q                    
Sbjct: 802 SGKLQTLQKLLTVWQRGGQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQEL 861

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +NE    +        G       G N +V F   W+    +Q  ER       + G
Sbjct: 862 MDRFNEDDSIVAALLTTRVGGVGVNLVGANRVVLFDPDWNPVTDEQARERAW-----RIG 916

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V VY LIA  T++E +L+R   K+ + + +L
Sbjct: 917 QTRDVGVYRLIASGTVEEAILRRQLAKTYVTEKVL 951


>gi|325478692|gb|EGC81803.1| hypothetical protein HMPREF9290_0083 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 66

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             +HD K+ ALE +IE AN  P+++AY + S L R++  F       K     +EWN G 
Sbjct: 2   IRIHDIKLDALEDLIEGANGKPVLIAYWYKSYLRRIKDKFDVREF--KTNEDFKEWNRGN 59

Query: 109 IPLLFAH 115
           IP+   H
Sbjct: 60  IPVAITH 66


>gi|46123559|ref|XP_386333.1| hypothetical protein FG06157.1 [Gibberella zeae PH-1]
          Length = 1117

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 27/169 (15%)

Query: 50   EVHDEKIKAL-EVII------EKANAAP---IIVAYHFNSDLARLQ----------KAFP 89
            E    K +AL E ++      E     P    +V   + S L  ++              
Sbjct: 932  EGPHTKTRALLEDLLKSKAASEANPDEPPYKSVVFSGWTSHLDLIELALNANGIMFTRLD 991

Query: 90   QGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +  +    +  + E   + ++     + G GLNL  G ++ V     ++     Q I
Sbjct: 992  GSMSRTQRTIAMDRFREDNTVHVILVSIMAGGLGLNLTAGNSVYVM-EPQYNPAAEAQAI 1050

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R+      + G KR V     I +++ +E +L+    K  +  L ++ 
Sbjct: 1051 DRV-----HRLGQKRPVRTVRYIMRDSFEEKMLELQEKKRKLASLSMDG 1094


>gi|154686721|ref|YP_001421882.1| YqhH [Bacillus amyloliquefaciens FZB42]
 gi|154352572|gb|ABS74651.1| YqhH [Bacillus amyloliquefaciens FZB42]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
            ++  +   + K   +  +I+K N   +I+   + +    LQ    Q         G   
Sbjct: 348 MDRINQVTQNSKAIQVVDLIQKINDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFK 406

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +++   GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI   
Sbjct: 407 RGKKDWMKDLFRGKVQVLIA-TEAGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI--- 461

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 462 --HRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVV 500


>gi|261198491|ref|XP_002625647.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594799|gb|EEQ77380.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239610080|gb|EEQ87067.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1776

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDK 96
            ++  +   W      +    + IIE+  A    +++  H    L  L++   Q GRT  +
Sbjct: 1330 IFTTDMDMWSLELSHRALVADQIIERSIAAGDKVLLFSHSIPTLNYLEQVLRQAGRTYSR 1389

Query: 97   ---------DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                          + +N      +      + G GLN+  G N ++ F   ++    +Q
Sbjct: 1390 LDGKTPVATRQVATKNFNSDSNTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQ 1448

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R       + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1449 AVGR-----AYRLGQLKPVYVYRFLAGGTYEDIMHNRAVFKTQLAFRVVD 1493


>gi|154309155|ref|XP_001553912.1| hypothetical protein BC1G_07472 [Botryotinia fuckeliana B05.10]
 gi|150852515|gb|EDN27707.1| hypothetical protein BC1G_07472 [Botryotinia fuckeliana B05.10]
          Length = 1420

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 23/171 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGR----- 92
             D + ++  +   K  AL+ ++    E+A    +++   F   LAR+     +       
Sbjct: 1192 SDYDPNFPLIPSAKTTALKALLLKGFEEAPDDKVVIYVQFR-TLARIIGRMCKAEGWGFL 1250

Query: 93   ------TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +L+      +E+ N   I +L A     G GLN  +  N  +   LWW+    Q
Sbjct: 1251 YLTGDASLEHRSKATKEFRNRDDIQILIAGLKCGGLGLNFPF-ANRCISLDLWWNHAVEQ 1309

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q   RI      + G  +  ++  L+  N++D  +L     K    +  ++
Sbjct: 1310 QAFGRIF-----RIGQNKETWMTRLVVANSVDMRLLGMQNWKLKACEKAID 1355


>gi|118096755|ref|XP_414277.2| PREDICTED: similar to KIAA0809 protein [Gallus gallus]
          Length = 1473

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 38/179 (21%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-------------- 95
           +  K+  L  ++E++      I+V     S L+ +++   +    +              
Sbjct: 728 NSPKMVLLFHLVEESVKLGDKILVFSQSLSTLSVIEEFLAKRPMPNPPGSDGGVHNWVRN 787

Query: 96  -------------KDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        +    I ++N+     + L      +   G+NL  G N +V F   W
Sbjct: 788 ISYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNL-IGANRVVVFDASW 846

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +     Q +      R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L
Sbjct: 847 NPCHDAQAV-----CRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDL 900


>gi|73997422|ref|XP_867833.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 13 [Canis familiaris]
          Length = 1918

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE---------- 106
                +++       L  L+          +    G T +     I  +N           
Sbjct: 1053 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNGKGRSRFHAGS 1112

Query: 107  ----------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +         + G G+NL    + ++ +   W+     Q       +R 
Sbjct: 1113 PTWDSIQAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA-----FSRA 1166

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 1167 HRIGQNKKVMIYRFVTRASVEERITQVAKKKMML 1200


>gi|268576823|ref|XP_002643391.1| C. briggsae CBR-CSB-1 protein [Caenorhabditis briggsae]
 gi|187026766|emb|CAP34339.1| CBR-CSB-1 protein [Caenorhabditis briggsae AF16]
          Length = 1015

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 29/215 (13%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEV----HDEK 55
           + Y +F   +    +   NI+AF       K   + N   +Y   +   ++        K
Sbjct: 521 RIYQEFCGSIEVQQILERNIKAFGG---INKLGDICNHPGIYRKMKPGTEKFGRMHDSGK 577

Query: 56  IKALEVIIEKANAAP---IIVAYH---------FNSDLARLQKAFPQGR-TLDKDPCTIQ 102
           +  L  +  +    P   +++            F  D  ++      G  +L +    I+
Sbjct: 578 VVMLFRLFRRWFKNPNNRVVLFTQRLAVVDMLAFYLDKKQIAYCTLTGNNSLPERTRIIK 637

Query: 103 EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + E   I +      + G GLNL    N  V F   W+ +   Q   RI      + G 
Sbjct: 638 RFEEDLSIKVFLMTTRTGGLGLNL-ASANKAVIFDPDWNPQADNQAKMRI-----YRMGQ 691

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  V +  L++  +I++    +   K  + + LLN
Sbjct: 692 QHKVTIVRLVSNGSIEDRKYFKQIQKENLAEQLLN 726


>gi|327351004|gb|EGE79861.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1775

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDK 96
            ++  +   W      +    + IIE+  A    +++  H    L  L++   Q GRT  +
Sbjct: 1329 IFTTDMDMWSLELSHRALVADQIIERSIAAGDKVLLFSHSIPTLNYLEQVLRQAGRTYSR 1388

Query: 97   ---------DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                          + +N      +      + G GLN+  G N ++ F   ++    +Q
Sbjct: 1389 LDGKTPVATRQVATKNFNSDSNTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNPTWEEQ 1447

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R       + G  + V+VY  +A  T ++++  R   K+ +   +++
Sbjct: 1448 AVGR-----AYRLGQLKPVYVYRFLAGGTYEDIMHNRAVFKTQLAFRVVD 1492


>gi|19552849|ref|NP_600851.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390520|ref|YP_225922.1| SNF2 family DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324406|dbj|BAB99030.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325857|emb|CAF21646.1| Superfamily II DNA/RNA helicase, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
          Length = 892

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 19/154 (12%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           +   K++ +  + E+A  +    ++  +F   L  L+K   + R + +    +       
Sbjct: 696 LTSAKMQRILELFEEAEEHGRKALIFTYFLDVLDELEKHLGE-RVIGRISGDVPATKRQL 754

Query: 109 I----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +            L A   + G GLN+Q   ++ +           QQ + R+      +
Sbjct: 755 LVDALSHSKPGSALIAQITAGGVGLNIQ-SASLCIICEPQVKPTIEQQAVARV-----HR 808

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            G    V V+ LI   T DE +L+ L  K+ + D
Sbjct: 809 MGQTATVQVHRLIGDETADERMLEILAGKTHVFD 842


>gi|307266866|ref|ZP_07548387.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918113|gb|EFN48366.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 224

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 27/188 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
             K ++L        +E             K++ L  ++ +        ++  H+    A
Sbjct: 18  LQKLMELCAHPRLVRDEGEVNTFQLLSESGKLQRLIELLNEIKRRGEKAVIFTHYIKMQA 77

Query: 83  RLQKAF----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
            L+K              G         I  + E     ++     + G G+ +    N 
Sbjct: 78  ILRKVIMDVFGINCPVINGNIKGDRMSIIDRFKESSGFGVIILSTRAAGVGVTITEANN- 136

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTK 187
           ++ ++  W+    +Q  +R+      + G  R V +YY I  +    T++E + + L+ K
Sbjct: 137 VIHYTRDWNPAVEKQATDRV-----YRIGQTREVNIYYPICISSRGKTVEERLNEVLQKK 191

Query: 188 STIQDLLL 195
             + + ++
Sbjct: 192 LQLLNEVI 199


>gi|332024047|gb|EGI64265.1| Transcriptional regulator ATRX-like protein [Acromyrmex echinatior]
          Length = 2412

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N ++ F   W+     Q I RI      + G K+  +VY  
Sbjct: 2034 LFLISTRAGGLGINLT-AANRVIIFDASWNPSHDVQSIFRI-----YRFGQKKPCYVYRF 2087

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  T++E +  R  TK ++   +++
Sbjct: 2088 LAAGTMEEKIYNRQVTKLSLSCRVVD 2113


>gi|530788|gb|AAA20872.1| X-linked nuclear protein [Homo sapiens]
 gi|1588601|prf||2209217A ATR-X gene
          Length = 1298

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 864  KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELADK 920

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               K    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 921  SREKTEDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 976

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 977  STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 1030

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 1031 TMEDKIYDRQVTKQSLSFRVVD 1052


>gi|237643583|ref|YP_002884273.1| GTA [Bombyx mandarina nucleopolyhedrovirus]
 gi|229358129|gb|ACQ57224.1| GTA [Bombyx mandarina nucleopolyhedrovirus]
          Length = 506

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 34/196 (17%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEK------------IKALEVIIEKANAAPIIVAY 75
             +K  Q+          ++  E  D              +  ++ I+  ++   I+V  
Sbjct: 303 LILKLRQICCHPYLAMHGRNLLETDDCFKMDYMSSKCKRVLDLVDDILNTSDDKIILV-S 361

Query: 76  HFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHG 122
            +   L   +  F Q            +  D+        N       +L       G G
Sbjct: 362 QWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILADTTFNNAADTQHRILLLSIKCGGVG 421

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTIDELV 180
           LNL  GGN +V     W+ +   Q  +RI      + G  +  +VY +  +  N+I++ +
Sbjct: 422 LNL-IGGNHIVMLEPHWNPQIELQAQDRIS-----RMGQTKNTYVYKMLNVEDNSIEKYI 475

Query: 181 LQRLRTKSTIQDLLLN 196
            QR   K    + +  
Sbjct: 476 KQRQDKKIAFVNTVFE 491


>gi|224110292|ref|XP_002315473.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864513|gb|EEF01644.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 670

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKA 58
           MKQ +   REL          A +   +++K  +  L N  +Y D     +      +  
Sbjct: 428 MKQINTLFRELEVVKGKIKACASDEEVESLKFTEKNLIN-KIYTDS---AEAKISGVLDY 483

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
           L  +IE       ++  H  S +  + +   +         G+T        + ++ E  
Sbjct: 484 LGTVIEA--GCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGKTAAASRQALVTDFQEKD 541

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I        + G GL L    + ++F  L W   +  Q  +R       + G   +V +
Sbjct: 542 AIKAAVLSIRAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDR-----AHRIGQVSSVNI 595

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           YYL+A +T+D+++   +++K      +L+  +K
Sbjct: 596 YYLLANDTVDDIIWDVVQSKLENLGQMLDGQEK 628


>gi|268564201|ref|XP_002639041.1| C. briggsae CBR-XNP-1 protein [Caenorhabditis briggsae]
 gi|187022150|emb|CAP38921.1| CBR-XNP-1 protein [Caenorhabditis briggsae AF16]
          Length = 1333

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 74/190 (38%), Gaps = 30/190 (15%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLAR 83
            S + K + L       +E      V  + +++L +I   +E            F+ D   
Sbjct: 919  SLSNKLVLLMAIIKKCEEIGDKLLVFSQSLESLALIRRMLEYMAGTGQ----WFSDDHEA 974

Query: 84   LQK-----AFPQGR---TLDKDPCTIQE------WNEGKI---PLLFAHPASCGHGLNLQ 126
            L       ++ +G    T+D    +++       +N+ +     L+     +   G N+ 
Sbjct: 975  LNAEGETWSWLEGEDYMTIDGSVQSVKRDAVQTQFNDPENLRARLMLISTRAGSLGTNM- 1033

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               N +V F   W+     Q + R+      + G  + V++Y  IAQ T++E + +R  T
Sbjct: 1034 VAANRVVIFDACWNPSHDTQSLFRV-----YRFGQTKPVYIYRFIAQGTMEERIYKRQVT 1088

Query: 187  KSTIQDLLLN 196
            K +    +++
Sbjct: 1089 KESTSMRVVD 1098


>gi|311110806|ref|ZP_07712203.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
 gi|311065960|gb|EFQ46300.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
          Length = 761

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT 100
             +KI+ +  I   ++     +IV   F + + +L K               + ++    
Sbjct: 566 DSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQRQEV 625

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++       +L     + G GLN+Q   N ++     W      Q I R       + 
Sbjct: 626 IDKFSENPNQNVLLVQIDAGGFGLNIQ-AANRVILCEPQWKPSTENQAISR-----AYRM 679

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 680 GQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 712


>gi|47209419|emb|CAF93109.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1232

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 34/162 (20%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEWNEGKIPLLFAHPA 117
              +++       L  +Q              G    ++    ++ ++   I        
Sbjct: 351 GHRVLLFSQMTRMLDIVQDYMEYRGYSYERLDGSIRGEERNLAVKNFSSNDIFAFLLSTK 410

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ------------------- 158
           + G GLNL    + ++F    ++     Q   R     Q +                   
Sbjct: 411 AGGVGLNLT-AADTVIFIDSDFNPHNDLQAAARCHRIGQDRWCSGTTVVTTWAGPQPDVL 469

Query: 159 ----AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   R V V  LI ++T++E++  R  +K  +   ++ 
Sbjct: 470 TITTVTHSRPVKVIRLIGRDTVEEIMYCRAASKLNLTKTVME 511


>gi|606833|gb|AAC50069.1| helicase II [Homo sapiens]
          Length = 1641

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   D   E +E         + L++A       ++          +  +E  +E    
Sbjct: 1145 KDFVTDADAEVLEHSGKMVLLFEILRMAEE---IGDKVLVFSQSLISLDLIEDFLELASR 1201

Query: 65   ---KANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKI---PLLFA 114
               +    P+I    +  +   L+           T        +E+N+       L   
Sbjct: 1202 EKTEDKDKPLI----YKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFII 1257

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G+NL    N ++ F   W+     Q I R+      + G  + V+VY  +AQ 
Sbjct: 1258 STKAGSLGINL-VAANRVIIFDASWNPSYDIQSIFRV-----YRFGQTKPVYVYRFLAQG 1311

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T+++ +  R  TK ++   +++
Sbjct: 1312 TMEDKIYDRQVTKQSLSFRVVD 1333


>gi|82596817|ref|XP_726418.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481821|gb|EAA17983.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 875

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
            K+KA++  I          ++  H    +  + +   + +           +DK    I
Sbjct: 576 AKVKAIKEYITYLIDADIKFLLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYI 635

Query: 102 QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +    KI +      +CG GLNL    N +VF  L+W   +  Q  +R       + G
Sbjct: 636 KNFQSDEKIRIALLSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDR-----AHRIG 689

Query: 161 FKR-AVFVYYLIAQNTIDELVLQRLRTK 187
                V ++YL+AQNTIDE+V + +  K
Sbjct: 690 TTHDTVNIHYLVAQNTIDEVVWKIINRK 717


>gi|116629551|ref|YP_814723.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095133|gb|ABJ60285.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 917

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT 100
             +KI+ +  I   ++     +IV   F + + +L K               + ++    
Sbjct: 722 DSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQRQEV 781

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++       +L     + G GLN+Q   N ++     W      Q I R       + 
Sbjct: 782 IDKFSENPNQNVLLVQIDAGGFGLNIQ-AANRVILCEPQWKPSTENQAISR-----AYRM 835

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 836 GQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 868


>gi|157126395|ref|XP_001654617.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108873303|gb|EAT37528.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 2905

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +     I  +N+    +         + G G+NL  G N ++     W+  
Sbjct: 1866 YRLDGKTQKNLRHRMITSFNDPSNKRTKCFLISAKAGGQGINL-IGANRVIILDTSWNPS 1924

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              QQ I RI      + G K+  FVY L+A  T++E V  R  TK  +   +++
Sbjct: 1925 NDQQNIFRIF-----RLGQKKKCFVYRLLAMGTMEEKVYSRSVTKQAMSFRVVD 1973


>gi|320528040|ref|ZP_08029206.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320131666|gb|EFW24230.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 706

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--N 67
           + +C +  + I ++  A ++   + +            W  ++  K + +  +  +A   
Sbjct: 495 DEWCMMNEDEINSYRKAVESENFMAM--------RRVSWNSLNSTKAERMTELCLQALSE 546

Query: 68  AAPIIVAYHFNSDLA-----RLQKAFPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASC 119
              +I+  +F   L+      L KA P      +L+K    + +++E    +L     + 
Sbjct: 547 GRKVIIFSYFLDTLSFVSDLLLGKALPVISGKLSLEKRQDILHQFDEPIARVLPIQIHAG 606

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLN+Q    I++         +  Q I R+      + G    VFVY L++ +TIDE 
Sbjct: 607 GIGLNIQT-AEIVILCEPQLKPSDEMQAISRV-----YRMGQVNHVFVYRLLSADTIDET 660

Query: 180 VLQRLRTKSTIQDLLLN 196
           +++RL  K  I D   +
Sbjct: 661 LVKRLHEKQNIFDQFAD 677


>gi|15613532|ref|NP_241835.1| SNF2 helicase [Bacillus halodurans C-125]
 gi|10173584|dbj|BAB04688.1| SNF2 helicase [Bacillus halodurans C-125]
          Length = 577

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 9   RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
           ++   DL   GE I A + A + +K L+        DE+      +   I  L  ++E+ 
Sbjct: 347 KKNCLDLIQLGERITAPSKAIELLKLLK------QSDEQAIVYSEYRVTIDLLSELLEEH 400

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           +       +   +   RL     Q         +I+ +   +  +      S G GLNLQ
Sbjct: 401 D-------FTVTTYHGRLSSREKQ--------QSIERFKNKEAQVF-ISSESGGQGLNLQ 444

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           +    L+ F L W+    +Q I R+      + G    V +Y +  +  IDE +L  L +
Sbjct: 445 F-CRRLINFDLPWNPMRIEQRIGRV-----HRFGQVNDVEIYTMPTKGAIDEYLLYTLTS 498

Query: 187 KSTIQDLLL 195
           K  + ++++
Sbjct: 499 KVNLFEVVI 507


>gi|328554198|gb|AEB24690.1| RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens TA208]
 gi|328912591|gb|AEB64187.1| putative RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens LL3]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
            ++  +   + K   +  +I+K N   +I+   + +    LQ    Q         G   
Sbjct: 348 MDRINQVTQNSKAIQVVDLIQKINDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFK 406

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +++   GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI   
Sbjct: 407 RGKKDWMKDLFRGKVQVLIA-TEAGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI--- 461

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 462 --HRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVV 500


>gi|159164912|gb|ABV80241.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNEG 107
            + +A    +++   F   L  +++   +              G+ L +    +I+ +N  
Sbjct: 1226 LSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNP 1285

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ V
Sbjct: 1286 NNDSRVLLASTRACCEGISLT-GASRIVLLDVVWN-----PAVGRQAISRAFRIGQKKFV 1339

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + Y LI   T +     R   K  +  L+ +
Sbjct: 1340 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|159164909|gb|ABV80238.2| required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNEG 107
            + +A    +++   F   L  +++   +              G+ L +    +I+ +N  
Sbjct: 1226 LSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNP 1285

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ V
Sbjct: 1286 NNDSRVLLASTRACCEGISLT-GASRIVLLDVVWN-----PAVGRQAISRAFRIGQKKFV 1339

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + Y LI   T +     R   K  +  L+ +
Sbjct: 1340 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|159164908|gb|ABV80237.2| required to maintain repression 1 [Zea mays]
 gi|159164910|gb|ABV80239.2| required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNEG 107
            + +A    +++   F   L  +++   +              G+ L +    +I+ +N  
Sbjct: 1226 LSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNP 1285

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ V
Sbjct: 1286 NNDSRVLLASTRACCEGISLT-GASRIVLLDVVWN-----PAVGRQAISRAFRIGQKKFV 1339

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + Y LI   T +     R   K  +  L+ +
Sbjct: 1340 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|159164914|gb|ABV80243.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNEG 107
            + +A    +++   F   L  +++   +              G+ L +    +I+ +N  
Sbjct: 1226 LSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNP 1285

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ V
Sbjct: 1286 NNDSRVLLASTRACCEGISLT-GASRIVLLDVVWN-----PAVGRQAISRAFRIGQKKFV 1339

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + Y LI   T +     R   K  +  L+ +
Sbjct: 1340 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|88855390|ref|ZP_01130054.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88815297|gb|EAR25155.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 714

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  + N+ ++ ++ A   + G GLNLQ   N +V   L W   E  Q I+R+  
Sbjct: 591 KARQNAIDSFANDPEVAVVVASLTAAGVGLNLQAASN-VVLAELSWTNAEQTQAIDRV-- 647

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               + G +  V  + +IA +TID  + + + +K+ +    L+   ++ I
Sbjct: 648 ---HRIGQELPVTAWRIIAAHTIDARIAELIDSKAGLAARALDGSDEDVI 694


>gi|281206497|gb|EFA80683.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1959

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 86   KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      +    I ++N+   +  L      +   G NL   G  ++   L W+   
Sbjct: 1736 YRLDGAVRPQERQNLINKFNDTGNQCKLFIISTKAGSLGTNLT-AGTRVILMDLLWNPVH 1794

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +Q + R       + G  + V+VY LI   +++E +  RL  K ++    ++
Sbjct: 1795 ERQAVYRCF-----RIGQTKPVYVYTLIIAGSLEENIYNRLVFKQSLAKRAID 1842


>gi|198430961|ref|XP_002124279.1| PREDICTED: similar to MGC115661 protein [Ciona intestinalis]
          Length = 831

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 33/197 (16%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           ++ L       N +  ++A K    LQ      Y++E   +K +   K   L  ++E   
Sbjct: 515 RKLLEASQSAVNQKGLSAAEKHGILLQ------YFNETAKFK-LPGIKSYVL-DLLE--G 564

Query: 68  AAPIIVAYHFNS--------------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               ++  H  S              D  R+  + P  R   +     +        +  
Sbjct: 565 GHKFLLFAHHKSVLDSVETDLNKKGCDYIRIDGSTPSER---RQTEVARFQENSSCKVAL 621

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+ L +  +++VF  L+W+     Q  +R       + G +  V V+YLIA+
Sbjct: 622 LSITAANMGITL-HSASLVVFAELFWNPGILVQAEDRC-----YRIGQRDVVNVHYLIAK 675

Query: 174 NTIDELVLQRLRTKSTI 190
           NT D+L+ Q ++ K  +
Sbjct: 676 NTADDLIWQMIKKKLEV 692


>gi|71651388|ref|XP_814373.1| DNA excision/repair protein SNF2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70879339|gb|EAN92522.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 729

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 51  VHDEKIK-ALEVIIEK-ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
           ++  KI  AL ++++        +V       L  L                    ++  
Sbjct: 414 LNSSKISSALALVVKCIGEQRKTLVFSRSKRLLDLLAVALRCWLIDFARLDGDVPAEERL 473

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T+Q +N+ + + +        G GL ++    +++     W+     Q I+R+      
Sbjct: 474 KTVQGFNQSERLLVCLLTTQVGGVGLTVEAASAVIIM-DPSWNPSSDAQAIDRV-----H 527

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G  R V VY LI   T++E V +    K      
Sbjct: 528 RIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 563


>gi|322823065|gb|EFZ28912.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 737

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 51  VHDEKIK-ALEVIIEK-ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
           ++  KI  AL ++++        +V       L  L                    ++  
Sbjct: 422 LNSSKISSALALVVKCIGEQRKTLVFSRSKRLLDLLAVALRCWLIDFARLDGDVPAEERL 481

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T+Q +N+ + + +        G GL ++    +++     W+     Q I+R+      
Sbjct: 482 KTVQGFNQSERLLVCLLTTQVGGVGLTVEAASAVIIM-DPSWNPSSDAQAIDRV-----H 535

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G  R V VY LI   T++E V +    K      
Sbjct: 536 RIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 571


>gi|302895297|ref|XP_003046529.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI 77-13-4]
 gi|256727456|gb|EEU40816.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI 77-13-4]
          Length = 1111

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 26/206 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +  +  L    ++A +      K     N    +D+           I+ L      + A
Sbjct: 892  KHAFVQLHRREVDAEHDGPAKTKSR---NSVKNFDKYDGPHTKTRALIEELLQHKAASEA 948

Query: 69   API------IVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGK-IPL 111
             P       +V   + S L  ++ A                       + ++ E   + +
Sbjct: 949  NPSEPPYKSVVFSGWTSHLDLIELALNAAGIKFTRLDGSMSRTLRTSAMDKFREDNTVHV 1008

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G GLNL  G ++ V     ++     Q I+R+      + G KR V     I
Sbjct: 1009 ILVSIMAGGLGLNLTAGNSVYVM-EPQYNPAAEAQAIDRV-----HRLGQKRPVRTVRYI 1062

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++ +E +L+    K  +  L ++ 
Sbjct: 1063 MRDSFEEKMLELQEKKMKLASLSMDG 1088


>gi|300708724|ref|XP_002996536.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
 gi|239605845|gb|EEQ82865.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
          Length = 594

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 19/177 (10%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAF 88
           K + L    V       ++E   +K++ +++ I+      I  I+  H  S +  L    
Sbjct: 396 KNISLVGDNVEQTAMGMYREAATQKLEPVKMYIDTILEKNIKFIIFAHHLSMMEGLSSYL 455

Query: 89  PQGR-----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              +           T  +     +  N G + +      +C  GL L     ++VF  L
Sbjct: 456 ADKKVNFIKMDGSVITSHRQRLVNEFQNNGNVRVALLSVTACNTGLTLT-AAKLVVFAEL 514

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +W+     Q  +RI      + G   +V ++YL+ + T+DE V   L  K  +   L
Sbjct: 515 YWNPGTLLQAEDRI-----HRIGQSSSVDIHYLVCKGTVDEYVWPILLKKLNVLQSL 566


>gi|2281697|gb|AAB64175.1| transcription factor [Mus musculus]
          Length = 1002

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 22/180 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALE-VIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL 94
           A   D+E   +     KI AL   +IE     P    +V   F + L+ ++        +
Sbjct: 812 ACDSDKESSMEWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFV 871

Query: 95  ----------DKDPCTIQEWNEGKIPLLFAH--PASCGHGLNLQYGGNILVFFSLWWDLE 142
                      K   +IQ +   +           + G GLNL    + +      W+  
Sbjct: 872 FTRLDGSMAQKKRVESIQRFQNTEAGSPTISTVLKAGGVGLNL-CARSRVFLMDPAWNPA 930

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Q  +R       + G K+ V +   I +++++E +L+   TK  +        K + 
Sbjct: 931 AEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFATKKTDA 985


>gi|238570323|ref|XP_002386825.1| hypothetical protein MPER_14768 [Moniliophthora perniciosa FA553]
 gi|215439877|gb|EEB87755.1| hypothetical protein MPER_14768 [Moniliophthora perniciosa FA553]
          Length = 91

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    +I+V +   W+ +   Q ++R       + G  + V+V+  
Sbjct: 4   IFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQADLQAMDR-----AHRIGQTKQVYVFRF 57

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I + +++E +L+R   K  +  L++   + +
Sbjct: 58  ITEGSVEERMLERAAQKLRLDQLVIQQGRTQ 88


>gi|311268976|ref|XP_003132292.1| PREDICTED: helicase ARIP4-like, partial [Sus scrofa]
          Length = 225

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 96  KDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +    I ++N+       L      +   G+NL  G N +V F   W+     Q +    
Sbjct: 9   ERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNPCHDAQAV---- 63

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L
Sbjct: 64  -CRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDL 108


>gi|324522288|gb|ADY48028.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Ascaris
           suum]
          Length = 147

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +  RL  + P    +++            + +      + G G+NL    +I++   + 
Sbjct: 14  HEYCRLDGSTP---VMERQERINAFNASNDLFVFLLSTKAGGMGINLTAANHIILH-DID 69

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++    +Q  +R       + G K+ VFV  LI+  +++E +L   R K  ++  +  A
Sbjct: 70  FNPYNDKQAEDRC-----HRMGQKKEVFVVRLISAGSVEEGMLSVARKKLELEKEVTGA 123


>gi|71001130|ref|XP_755246.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66852884|gb|EAL93208.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159129330|gb|EDP54444.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 2115

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT 93
            + + A    EE    +    K+  L  I+++  N    I+   F   +    KAF   + 
Sbjct: 1920 MISAASLGFEEDRSTQYGGRKMDKLVEIVKEIPNQERAILFIQFPELIDVASKAFDLAKI 1979

Query: 94   LD-----KDPCTIQEWNEGKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-Q 146
                   +D   I+E+ +G   +      S    GLNLQ   N ++F S      ++   
Sbjct: 1980 THAVITARDTKKIEEFKKGNEKVAILQLGSETAAGLNLQC-TNHVIFLSPMLAETQYDYD 2038

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK----STIQDLLLNA 197
                  + R  + G  R V VY+L+ + TID  +LQ  R K       Q +L+ A
Sbjct: 2039 SSMTQAIGRALRYGQTRRVHVYHLLMKRTIDVNILQERRGKILVERNGQAVLVKA 2093


>gi|164660184|ref|XP_001731215.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
 gi|159105115|gb|EDP44001.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
          Length = 713

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAA---PIIVAYHFNSDL---ARLQK-------AFPQ 90
           + ++       K+  LE  +    A     I++  ++   L    RL +           
Sbjct: 571 DRRNVAVGLSGKLAVLERFLTSMRAKTDDKIVLISNYTQTLDLFERLCRSRRWGFFRLDG 630

Query: 91  GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              ++K    +  +N  EG   +      + G GLNL  G N LV F   W+    QQ +
Sbjct: 631 TMNINKRQNLVDRFNNPEGSEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPASDQQAL 689

Query: 149 ERIGVTRQRQAGFKRAVFV 167
            R+      + G K++   
Sbjct: 690 ARVW-----RDGQKKSCTY 703


>gi|302413912|ref|XP_003004788.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
 gi|261355857|gb|EEY18285.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
          Length = 868

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 59  LEVIIEKANAA---------PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
           LE +++                +V   + + L  ++ A                 +    
Sbjct: 693 LEDLLKSEAETAANPTLPPFKSVVFSSWTTHLDLIEMALDSVGITYSRLDGKMSRNARTK 752

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+ +   I ++     +   GLNL  G N+ V     ++     Q ++R+      +
Sbjct: 753 AMDEFRDNPSIHVILVSIMAGSLGLNLTSGNNVYVM-EPQYNPAAEAQAVDRV-----HR 806

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G KR V     I +N+ +E +++    K  +  L ++ 
Sbjct: 807 LGQKRPVQTVRYIMRNSFEEKMIELQDKKKKLASLSMDG 845


>gi|258574015|ref|XP_002541189.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901455|gb|EEP75856.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 256

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 36/208 (17%)

Query: 13  CDLQGENIEAFNSA-SKTVKCLQLANGAVYY---------DEEKHWKEV-----HDEKIK 57
           C   G+    + S  +     L+  N  V            EE  W  +        K+ 
Sbjct: 12  CSSSGQEFTFYQSLPALYNNILERQNHPVQISGNETSITDQEENDWISLAGHLMPSAKLT 71

Query: 58  ALEVII----EKANAAPIIVAYHFNSDLARLQK-AFPQG---------RTLDKDPCTIQE 103
           A++  +      +    + +   F   +  L      QG             +    I+E
Sbjct: 72  AIQSCVANWLTNSPGTKVTIFTQFRGMVRILSNMCIKQGWGHTTLTGNAPPSERHRDIEE 131

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +  + +L +   + G GLNL    +  +   LWW+    QQ   R+      + G  
Sbjct: 132 FRVDPTVRVLISSLKAGGTGLNLTM-ADKCILVDLWWNEAIEQQAFCRLF-----RYGQT 185

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + V +  +  +N+ID+ +      KST 
Sbjct: 186 KEVEIVRISVKNSIDDRIQLIQHEKSTS 213


>gi|237717088|ref|ZP_04547569.1| helicase [Bacteroides sp. D1]
 gi|294647817|ref|ZP_06725369.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|229443071|gb|EEO48862.1| helicase [Bacteroides sp. D1]
 gi|292636725|gb|EFF55191.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
          Length = 829

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +   Q+    +     D++  +    +E +  L  + E  +   +++   +      +
Sbjct: 489 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEK-VVIFSQWERMTRLI 547

Query: 85  QKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            K         +                 + E     +F    +   GLNLQ   +IL+ 
Sbjct: 548 AKELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFLSTDAGSTGLNLQV-ASILIN 606

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 607 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 661

Query: 195 LN 196
           L+
Sbjct: 662 LD 663


>gi|123455548|ref|XP_001315517.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121898196|gb|EAY03294.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1579

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 21/161 (13%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           K LE +  K     +++       L  L++              +   ++K     +   
Sbjct: 613 KVLEEL--KRENHKVLIFSQKVQLLHILREFCMLSGYNNELLIGEMSDIEKADAIDRYSK 670

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      +   GLNL    +  + F   W+ +   Q   R+      + G  + V
Sbjct: 671 NPDSFVFLISTRAGSEGLNLTV-ADTAIIFDPDWNPQNDLQAQARV-----HRIGQTQKV 724

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETIH 204
            V  LI  NT +  +  R + K  +   LL  NA K + I 
Sbjct: 725 DVLRLITYNTYEHEMFIRAQKKLGLWMDLLGENATKNDGIQ 765


>gi|331225801|ref|XP_003325571.1| hypothetical protein PGTG_07404 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309304561|gb|EFP81152.1| hypothetical protein PGTG_07404 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 371

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 55  KIKALEVIIEKANAA--PIIVAYHFNSDLARL----QKAFPQGRTLDKDPCTIQEWN--- 105
           K K L+ ++E+   A   +++       +  L    Q+ FP+   LD      + +    
Sbjct: 44  KWKVLKPLLEQWKKAQFKVLLFSQSTKMMDILEYWLQQDFPEFVRLDGSVAIRERFKRVD 103

Query: 106 ----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +    +  A   + G GLNL     ++      W+     Q ++R+      + G 
Sbjct: 104 EFQTDPSKFIFLASIKAAGVGLNLTAANKVV----PSWNPSHDAQAMDRVV-----RIGQ 154

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           KR V    LI+  T +EL+  R   K  + +
Sbjct: 155 KREVECIRLISSGTTEELIYHRQLYKQGLSE 185


>gi|206599758|ref|YP_002241947.1| gp54 [Mycobacterium phage Gumball]
 gi|206282972|gb|ACI06426.1| gp52 [Mycobacterium phage Gumball]
          Length = 647

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 74/230 (32%), Gaps = 39/230 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           +K Y    ++    L+   + A    ++  +  Q+A    Y D       E+     +  
Sbjct: 412 LKAYQAMVKDAAVKLESGVLSANGVLAEMTRLKQMACS--YGDLAIAPTGEQTFRPSLPS 469

Query: 54  EKIKALEVIIEKAN--------AAPIIVAYHFNSDLAR---------LQKAFPQGRTLDK 96
            K   L  ++               +IVA  F   L           ++     G T +K
Sbjct: 470 NKFDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYAELNKLGIKCHLLTGATSEK 529

Query: 97  DP-CTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +       +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R
Sbjct: 530 ERVRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDR 588

Query: 151 IGVTRQRQAGF-KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +       V ++ L +  +I+E +      +      +++  +
Sbjct: 589 -----AHRISRTDHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGAR 633


>gi|322493268|emb|CBZ28553.1| DNA repair protein-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 909

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 698 DMNNWSLQLSSKTQYLIDTIRSLPVEDKVVVFSTFLTYL-RCAQHWLQAAGVSCALYSGS 756

Query: 93  -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 757 MTMKQRQSLLELFHDAARPGSPRVLLATISSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 815

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + RI      + G  + V    LIA+ TI++ + Q    K  + 
Sbjct: 816 LNRI-----YRIGQTKPVTFTKLIAEGTIEQNISQLCERKRALS 854


>gi|294806211|ref|ZP_06765058.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294446467|gb|EFG15087.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 827

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +   Q+    +     D++  +    +E +  L  + E  +   +++   +      +
Sbjct: 487 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEK-VVIFSQWERMTRLI 545

Query: 85  QKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            K         +                 + E     +F    +   GLNLQ   +IL+ 
Sbjct: 546 AKELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFLSTDAGSTGLNLQV-ASILIN 604

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 605 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 659

Query: 195 LN 196
           L+
Sbjct: 660 LD 661


>gi|302144116|emb|CBI23221.3| unnamed protein product [Vitis vinifera]
          Length = 135

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLL 112
           ++E   +A  +V   F S L  +  +  +         G    ++    + +N+    +L
Sbjct: 1   MVETDGSAKALVFSQFVSFLDLIDYSLQKSQINCVKLVGDVAARNALVSRFFNDSDCRIL 60

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G  LNL    + +     ++      Q  +        + G  +AV +   + 
Sbjct: 61  LTTSEAGGLSLNLSV-ASYVFLMEPFFSSAVELQACD-----GVYRIGQHKAVRIVKFVT 114

Query: 173 QNTIDELVLQRLRTKS 188
           +NTI+E +L+    K+
Sbjct: 115 ENTIEERILELQAKKN 130


>gi|71001976|ref|XP_755669.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66853307|gb|EAL93631.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159129727|gb|EDP54841.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1200

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKAL-EVIIEKANAAPII---------VAYHFNSDLARLQKAFPQGR------- 92
            E    K KAL   + E A  +  +         V   + S L  ++ A            
Sbjct: 1016 EGPHTKTKALLAHLSESAEESKRLNAEPPIKSVVFSAWTSHLDLIEIALKDRGMTGFTRL 1075

Query: 93   ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +L      ++++       +L A   + G GLNL     + +     ++     Q 
Sbjct: 1076 DGTMSLAARNKALEDFHTNDNTTILLATIGAGGVGLNLTSASKVYIM-EPQYNPAAVAQA 1134

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I+R+      + G  R V     I + +I+E + +  + K  + D+ +N  K +   +
Sbjct: 1135 IDRV-----HRLGQTREVTTVQFIMKGSIEEKIFELAKKKQQLADMSMNRGKLDKKEI 1187


>gi|188536006|ref|NP_001120938.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Danio rerio]
 gi|221222756|sp|B2ZFP3|SMAL1_DANRE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|187373311|gb|ACD03327.1| Smarcal1 [Danio rerio]
          Length = 807

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 25/206 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----KEVHDEKIKALEVI 62
           ++     +  + I +   A+      +LA G     +EK           + KI+A+   
Sbjct: 561 KQRKVVTVTTDGINSRTKAALNAAARELAKGYHNKSQEKEALLVFFNHTAEAKIRAIMEY 620

Query: 63  IEKA---NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWNEGKI 109
           I           +V  H    L  + K             G T   +   + + +   + 
Sbjct: 621 ISDMLECGREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQ 680

Query: 110 P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      +   GL L +   ++VF  L+W+     Q  +R+      + G    V ++
Sbjct: 681 SCVAVLSITAANMGLTL-HSAALVVFAELFWNPGVLIQAEDRV-----HRIGQTSNVDIH 734

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLL 194
           YL+A+ T D+ +   ++ K  + + +
Sbjct: 735 YLVAKGTADDYLWPMIQAKMNVLEQV 760


>gi|257481637|ref|ZP_05635678.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 629

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 482 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDA 541

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 542 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 595

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 596 RVVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 629


>gi|328863835|gb|EGG12934.1| hypothetical protein MELLADRAFT_87196 [Melampsora larici-populina
           98AG31]
          Length = 347

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +       ++   + S +  +           ++      T ++         +  +   
Sbjct: 174 KSHGGGKSVIYTQWKSFIDWIIMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAF 233

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    + +      W+ +  QQ ++R+      + G  ++V V++++ 
Sbjct: 234 VVSIEAGGVGLNMTC-ADEVYLMDAHWNPQVVQQAVDRL-----HRIGQAKSVRVFHVVT 287

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
             +I++ +    + K+ +   ++
Sbjct: 288 GQSIEQHLYNVQKRKAALAKRVI 310


>gi|319651521|ref|ZP_08005649.1| DNA/RNA helicase protein [Bacillus sp. 2_A_57_CT2]
 gi|317396836|gb|EFV77546.1| DNA/RNA helicase protein [Bacillus sp. 2_A_57_CT2]
          Length = 562

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEWNEG 107
           + K +    II+  N   +I+   + +    LQ    Q                ++W   
Sbjct: 358 NSKAQKALEIIQNINDK-VIIFTEYRATQMYLQWFLKQYGITSVPFRGGFKRGKKDWMRE 416

Query: 108 ---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K   +     + G G+NLQ+  N ++ F L W+    +Q I RI      + G ++ 
Sbjct: 417 LFQKNAQVLIATEAGGEGINLQF-CNHIINFDLPWNPMRLEQRIGRI-----HRLGQEKD 470

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V +Y    ++T++E V++ L  K  + + ++
Sbjct: 471 VMIYNFATKDTVEEHVMKLLYEKIHLFEKVI 501


>gi|126665998|ref|ZP_01736978.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
 gi|126629320|gb|EAZ99937.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
          Length = 942

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 68/169 (40%), Gaps = 23/169 (13%)

Query: 28  KTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +     +L + A    D+++  +   D+ I     I+   +   +++   + +  A +++
Sbjct: 496 ELEHLDELISEAGALRDDDRKLQGFADQLIAK---ILTPNSKEKVLIFTEYRATQAYIRE 552

Query: 87  AFPQ------GRTLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
              +         ++      +    I  + EG          + G G+NLQ   +I+V 
Sbjct: 553 ILEKRFGEGSVELINGSMPHAQRRDAIARFEEGAN--FLVSTEAGGEGINLQRKCHIMVN 610

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           + L W+     Q I R+      + G K+ V V+ L + +T DE V++ 
Sbjct: 611 YDLPWNPMRLVQRIGRL-----YRYGQKKRVVVFNLHSPDTADEQVMEL 654


>gi|9627784|ref|NP_054071.1| global transactivator-like protein [Autographa californica
           nucleopolyhedrovirus]
 gi|1170083|sp|P41447|GTA_NPVAC RecName: Full=Probable global transactivator; AltName:
           Full=ATP-dependent helicase GTA
 gi|559111|gb|AAA66672.1| global transactivator-like protein [Autographa californica
           nucleopolyhedrovirus]
          Length = 506

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 54/237 (22%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSAS----------KTVKCLQLANGAVYYDEEK 46
            Y K +    C+ +   ++A       N+ S            +K  Q+          K
Sbjct: 266 LYDKLK----CESEEAYVKAVAARENENALSRLQQMQHVLWLILKLRQICCHPYLAMHGK 321

Query: 47  HWKEVHDEK------------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---G 91
           +  E +D              +  ++ I+  +N   I+V   +   L   +  F Q    
Sbjct: 322 NILETNDCFKMDYMSSKCKRVLDLVDDILNTSNDKIILV-SQWVEYLKIFENFFKQKNIA 380

Query: 92  RTLDKDPCTIQE-------WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             +      +++       +N+       +L       G GLNL  GGN +V     W+ 
Sbjct: 381 TLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKCGGVGLNL-IGGNHIVMLEPHWNP 439

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   Q  +RI      + G  +  +VY +  +  N+I++ + QR   K    + +  
Sbjct: 440 QIELQAQDRIS-----RMGQTKNTYVYKMLNVEDNSIEKYIKQRQDKKIAFVNTVFE 491


>gi|225432202|ref|XP_002269671.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736823|emb|CBI26024.3| unnamed protein product [Vitis vinifera]
          Length = 677

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 25/210 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKA 58
           MKQ +   REL               ++++K  +  L N  +Y D     +      +  
Sbjct: 434 MKQINALFRELEVVKSKIKASKSKEEAESLKFSEKNLIN-KIYTDS---AQAKIPAVLDY 489

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
           L  ++E       ++  H    +  + +   +         G T        + ++ E  
Sbjct: 490 LGTVVEA--GCKFLIFAHHQPMIDSIFQFLVKKKVGCIRIDGSTPSSSRQAFVTDFQEKD 547

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I        + G GL L    + ++F  L W   +  Q  +R+      + G   +V +
Sbjct: 548 TIKAAVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDRV-----HRIGQVSSVNI 601

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +YL+A +T+D+++   +++K      +L+ 
Sbjct: 602 HYLLANDTVDDIIWDVVQSKLENLGQMLDG 631


>gi|109522826|ref|YP_655246.1| gp50 [Mycobacterium phage PBI1]
 gi|189043204|ref|YP_001936143.1| gp52 [Mycobacterium phage Adjutor]
 gi|206599671|ref|YP_002241550.1| gp52 [Mycobacterium phage Butterscotch]
 gi|206599847|ref|YP_002241467.1| gp53 [Mycobacterium phage Troll4]
 gi|88910539|gb|ABD58466.1| gp50 [Mycobacterium phage PBI1]
 gi|188090855|gb|ACD49637.1| gp52 [Mycobacterium phage Adjutor]
 gi|206282853|gb|ACI06340.1| gp52 [Mycobacterium phage Butterscotch]
 gi|206283089|gb|ACI06514.1| gp53 [Mycobacterium phage Troll4]
          Length = 647

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 74/230 (32%), Gaps = 39/230 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           +K Y    ++    L+   + A    ++  +  Q+A    Y D       E+     +  
Sbjct: 412 LKAYQAMVKDAAVKLESGILSANGVLAEMTRLKQMACS--YGDLAIAPTGEQTFRPSLPS 469

Query: 54  EKIKALEVIIEKAN--------AAPIIVAYHFNSDLAR---------LQKAFPQGRTLDK 96
            K   L  ++               +IVA  F   L           ++     G T +K
Sbjct: 470 NKFDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYTELNKLGIRCHLLTGATSEK 529

Query: 97  DP-CTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +       +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R
Sbjct: 530 ERVRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDR 588

Query: 151 IGVTRQRQAGF-KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +       V ++ L +  +I+E +      +      +++  +
Sbjct: 589 -----AHRISRTDHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGAR 633


>gi|326333794|ref|ZP_08200027.1| SNF2 domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325948376|gb|EGD40483.1| SNF2 domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 905

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDP 98
           +     K++ L  I+ +A  N   +IV  HF   L  L    P             ++  
Sbjct: 706 QGTSSAKVERLIEIVGEAEENGRRVIVFSHFRKVLDDLVTLLPGEVFGPLTGSVPAEERQ 765

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E++  G   +L     + G GLN+Q   +++V            Q I R      R
Sbjct: 766 QMVDEFSAAGHGAVLVTQIVAGGVGLNIQ-AASVVVICEPQLKPTIEWQAIAR-----AR 819

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G  ++V V+ L+++  +D+ V   L  K+ + D 
Sbjct: 820 RMGQLQSVQVHRLLSEVGVDQRVHDILAAKAELFDD 855


>gi|313227060|emb|CBY22207.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I+++ +  +P +L     +   G+N+      +V F + W+     Q + RI   
Sbjct: 11  EREKIIKKFTDFPLPSILIISTRAGCVGINVT-AATRVVMFDVSWNPVHDAQAVCRI--- 66

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++A F+Y L+A   ++  + +R   K+++   +++
Sbjct: 67  --YRIGQEKACFIYRLVADGCMERAIYERQVAKTSLSRRIVD 106


>gi|313218173|emb|CBY41468.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I+++ +  +P +L     +   G+N+      +V F + W+     Q + RI   
Sbjct: 11  EREKIIKKFTDFPLPSILIISTRAGCVGINVT-AATRVVMFDVSWNPVHDAQAVCRI--- 66

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G ++A F+Y L+A   ++  + +R   K+++   +++
Sbjct: 67  --YRIGQEKACFIYRLVADGCMERAIYERQVAKTSLSRRIVD 106


>gi|262405856|ref|ZP_06082406.1| helicase [Bacteroides sp. 2_1_22]
 gi|262356731|gb|EEZ05821.1| helicase [Bacteroides sp. 2_1_22]
          Length = 801

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +   Q+    +     D++  +    +E +  L  + E  +   +++   +      +
Sbjct: 461 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEK-VVIFSQWERMTRLI 519

Query: 85  QKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            K         +                 + E     +F    +   GLNLQ   +IL+ 
Sbjct: 520 AKELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFLSTDAGSTGLNLQV-ASILIN 578

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 579 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 633

Query: 195 LN 196
           L+
Sbjct: 634 LD 635


>gi|297852448|ref|XP_002894105.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339947|gb|EFH70364.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 673

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
           +Y D            +  L  ++E       +V  H  S L  + +   + +       
Sbjct: 461 IYTDSAGAKIP---AVLDYLGTVLEA--GCKFLVFAHHQSMLDAIHQFLKKKKVGCIRID 515

Query: 94  ----LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      + ++ +  +I        + G G+ L    + ++F  L W   +  Q  
Sbjct: 516 GSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLT-AASTVIFAELAWTPGDLIQAE 574

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G   +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 575 DR-----AHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 618


>gi|326476932|gb|EGE00942.1| chromodomain helicase DNA binding protein [Trichophyton tonsurans
           CBS 112818]
          Length = 423

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           K    I  +N    +         + G G+NL    + ++     ++  +  Q + R   
Sbjct: 30  KKQKNIDAYNAPGSEYFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQDIQALSR--- 85

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               + G K+ V V+ L+ + + +E ++Q  + K  +  +L+  +
Sbjct: 86  --AHRIGQKKKVMVFQLMTRGSAEEKIMQIGKKKMALDHVLIERM 128


>gi|13543768|gb|AAH06035.1| Chd4 protein [Mus musculus]
          Length = 829

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +    G T +     I  +N    +         + G G+NL    + ++ +   W+   
Sbjct: 1   ERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHN 59

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             Q       +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 60  DIQA-----FSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMML 101


>gi|295674753|ref|XP_002797922.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280572|gb|EEH36138.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1797

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DPCTIQEWNEGK-IPLLFAHP 116
               +++  H    L  L+    Q GRT  +            + + +N G    +     
Sbjct: 1356 GDKVLLFSHSIPTLNYLEHVLRQAGRTYSRLDGKTPIATRQISTKNFNSGSYTQVYLIST 1415

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLN+  G N ++ F   ++    +Q + R       + G ++ VFVY  +A  T 
Sbjct: 1416 RAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR-----AYRLGQRKPVFVYRFLAGGTF 1469

Query: 177  DELVLQRLRTKSTIQDLLLNAL 198
            ++++  +   K+ +   +++ +
Sbjct: 1470 EDIMHNKAVFKTQLSYRVIDKM 1491


>gi|161528234|ref|YP_001582060.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
 gi|160339535|gb|ABX12622.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
          Length = 574

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I ++ +G+  L+ A   +   G+NL      ++F  L W    H+Q  +R+     
Sbjct: 455 RQDQIDKFQKGESKLMIAGIRAGNVGINLTR-AKYVIFAELDWSPAIHRQAEDRL----- 508

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +  VF YYLI   T+D+ V   L  KS   D +++
Sbjct: 509 HRIGQQNTVFAYYLIGNGTLDDHVANVLVDKSYEIDEIMD 548


>gi|119189989|ref|XP_001245601.1| hypothetical protein CIMG_05042 [Coccidioides immitis RS]
          Length = 1056

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 50   EVHDEKIKALEV----IIEKANAAP------IIVAYHFNSDLARLQKAFPQGRT------ 93
            E    K KAL       +E++   P       +V   + S L  ++ A            
Sbjct: 872  EGPHTKTKALISHLLGTVEESKHNPDQPPIKSVVFSSWTSHLDLIEIALQDNGIRGFTRL 931

Query: 94   -----LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 L +    + ++ +   I +L A   + G GLNL     + +     ++     Q 
Sbjct: 932  DGTMALKQRNVALDKFRDDDNITVLLATLGAGGVGLNLTSASRVYIM-EPQYNPAAVAQA 990

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++R+      + G  R V     I + +I+E + +  + K  + ++ LN  K +   +
Sbjct: 991  VDRV-----HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREM 1043


>gi|50954487|ref|YP_061775.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950969|gb|AAT88670.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 721

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N +  + +      + G GLNLQ   N +V   L W   E  Q I+R+    
Sbjct: 601 RQKEIDAFNTDPGVSVAVCSLTAAGVGLNLQAASN-VVLAELSWTAAEQTQAIDRV---- 655

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +  V  + +IA  TID  + + +  K  +    L+ 
Sbjct: 656 -HRIGQEEPVTAWRIIAAQTIDSKIAELIDAKQGLAARALDG 696


>gi|116196398|ref|XP_001224011.1| hypothetical protein CHGG_04797 [Chaetomium globosum CBS 148.51]
 gi|88180710|gb|EAQ88178.1| hypothetical protein CHGG_04797 [Chaetomium globosum CBS 148.51]
          Length = 1110

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 17/136 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEG-KIPLLFAHPASCG 120
            +V   + S L  +Q A               T       +  + +   + ++     + G
Sbjct: 955  VVFSGWTSHLDLIQIALDNAGITYTRLDGKMTRTARNAAMDAFRDDHSVQVILVSIMAGG 1014

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G ++ V     ++     Q ++R+      + G  RAV     I +++ +E +
Sbjct: 1015 LGLNLTAGNSVYVM-EPQFNPAAEAQAVDRV-----HRLGQTRAVRTVRFIMKDSFEEKM 1068

Query: 181  LQRLRTKSTIQDLLLN 196
            LQ    K  +  L ++
Sbjct: 1069 LQLQDKKKKLASLSMD 1084


>gi|289647486|ref|ZP_06478829.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 564

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 402 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLIGSDSPKKRQKAIDA 461

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 462 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 515

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 516 RVVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 549


>gi|170039496|ref|XP_001847569.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863046|gb|EDS26429.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 959

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     + G GLNL  G N L+   L W+ +   Q  +R+      + G K+ V+++  
Sbjct: 860 IMLLSLTAGGVGLNL-VGANHLMLLDLHWNPQLEAQAQDRV-----YRVGQKKPVYIWKF 913

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +  +T+++ ++   + K  +    L   K
Sbjct: 914 MCTDTVEQKIMGLQQKKLDLATQALTGTK 942


>gi|149182929|ref|ZP_01861387.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. SG-1]
 gi|148849378|gb|EDL63570.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. SG-1]
          Length = 565

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 79/201 (39%), Gaps = 23/201 (11%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            QRE     +       N   +T +   QL N      ++    + + +  +AL+ II+ 
Sbjct: 312 LQREACSSREAVFYTLKNMLQRTDQPSAQLTNSVNALMKKVEAVQTNSKAQEALK-IIQS 370

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEW------NEGKIPLLFA 114
            N   +I+   + +    LQ    Q                ++W      N  ++     
Sbjct: 371 VNDK-VIIFTEYRATQLYLQWFLKQNGITSVPFRGGFKRGKKDWMRELFKNHAQV---LI 426

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ+  + ++ F L W+    +Q I R+      + G    V +Y    ++
Sbjct: 427 ATEAGGEGINLQF-CHHIINFDLPWNPMRLEQRIGRV-----HRLGQTEDVHIYNFATRD 480

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T++E +L+ L  K ++ + ++
Sbjct: 481 TVEEHILKLLYEKISLFEKVI 501


>gi|47216738|emb|CAG01012.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 381

 Score = 75.7 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 17/143 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIPLLFAHP 116
               +V  H  + L    +A  + +             ++     +  N+ +  +     
Sbjct: 6   EKKFLVFAHHLTMLQACTEAVIEAKVGYIRIDGSVPSSERIQLVHKFQNDPETRVAVLSI 65

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GL      + +VF  L+W+    +Q  +R       + G   ++ V+YLIA+ T 
Sbjct: 66  QAAGQGLTFT-AASHVVFAELYWNPGHIKQAEDR-----AHRIGQTSSINVHYLIAKGTF 119

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           D ++   L  K T+    LN  K
Sbjct: 120 DTVMWSMLNRKETVTGTTLNGKK 142


>gi|156061829|ref|XP_001596837.1| hypothetical protein SS1G_03060 [Sclerotinia sclerotiorum 1980]
 gi|154700461|gb|EDO00200.1| hypothetical protein SS1G_03060 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1081

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 17/135 (12%)

Query: 74   AYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCGHG 122
               F + L     RL++A      LD      Q          +  +        + G  
Sbjct: 933  FSQFTTMLQLVEWRLRRAGITTVMLDGSMTPAQRQASINHFMTDVNVECFLVSLKAGGVA 992

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    N +     WW+     Q  +R       + G  R   +  L  +++++  ++ 
Sbjct: 993  LNLTE-ANKVFIVDPWWNPAAEWQSADRC-----HRIGQARPCSITRLCIEDSVESRMVL 1046

Query: 183  RLRTKSTIQDLLLNA 197
                K+ +    +NA
Sbjct: 1047 LQEKKANMIHSTINA 1061


>gi|154311656|ref|XP_001555157.1| hypothetical protein BC1G_06287 [Botryotinia fuckeliana B05.10]
 gi|150850798|gb|EDN25991.1| hypothetical protein BC1G_06287 [Botryotinia fuckeliana B05.10]
          Length = 1081

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 17/135 (12%)

Query: 74   AYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCGHG 122
               F + L     RL++A      LD      Q          +  +        + G  
Sbjct: 933  FSQFTTMLQLVEWRLRRAGITTVMLDGSMTPAQRQASINHFMTDVNVECFLVSLKAGGVA 992

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    N +     WW+     Q  +R       + G  R   +  L  +++++  ++ 
Sbjct: 993  LNLTE-ANKVFIVDPWWNPAAEWQSADRC-----HRIGQARPCSITRLCIEDSVESRMVL 1046

Query: 183  RLRTKSTIQDLLLNA 197
                K+ +    +NA
Sbjct: 1047 LQEKKANMIHSTINA 1061


>gi|194867550|ref|XP_001972094.1| GG15331 [Drosophila erecta]
 gi|190653877|gb|EDV51120.1| GG15331 [Drosophila erecta]
          Length = 1272

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 24/175 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
              K        KI ++  ++ K         II+   + + L  + +A        ++ C
Sbjct: 1097 AHKSIIGDFSTKISSIVELVLKIKGDNEMEKIIIFSQWQAILIEIARALSLNGIRFRNKC 1156

Query: 100  TIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            T +++ + K P+     L    +    GLNL    + +       +  +  Q I RI   
Sbjct: 1157 TNKDFEDFKNPVSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPSDEHQAIGRI--- 1212

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
               + G K+   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1213 --HRFGQKKPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1265


>gi|299472392|emb|CBN77580.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 991

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 18/148 (12%)

Query: 62  IIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE--WNEGKI 109
           + ++     I+V  H  + L           R++     GRT  KD   + +   +   +
Sbjct: 574 LADEMTGGKILVFAHHRNVLDALEQSVVRTGRVEYIRIDGRTKPKDRQDLVDTFQSNPSV 633

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+ L    + +VF  L+W   +  Q  +R       + G    V V Y
Sbjct: 634 RVALLGLTAAGIGITLT-AASRVVFAELYWTPAQLLQAEDRC-----HRIGQATVVKVQY 687

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           L+A+ ++D+ +   ++ K  +   ++  
Sbjct: 688 LVAKGSLDDALWPLIQEKIKLLGEMVEG 715


>gi|197308160|gb|ACH60431.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           macrocarpa]
          Length = 73

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+      +      + G G+NL    +  + +   W+ +   Q ++R       +
Sbjct: 1   IKDFNDPDSKFCIFLLSTRAGGLGINLT-AADTCIIYDSDWNPQMDMQAMDRC-----HR 54

Query: 159 AGFKRAVFVYYLIAQNTID 177
            G  + V V  LI  ++++
Sbjct: 55  IGQTKPVHVSRLITAHSVE 73


>gi|289628760|ref|ZP_06461714.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 602

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 440 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLIGSDSPKKRQKAIDA 499

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 500 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 553

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 554 RVVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 587


>gi|114596227|ref|XP_001144339.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 2 [Pan troglodytes]
          Length = 955

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    ++++ +   W+ +   Q ++R       + G  + V V+  I  NT++E
Sbjct: 465 GGLGINL-ATADVVILYDSDWNPQVDLQAMDR-----AHRIGQTKTVRVFRFITDNTVEE 518

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++R   K  +  +++ 
Sbjct: 519 RIVERAEMKLRLDSIVIQ 536


>gi|290970736|ref|XP_002668235.1| predicted protein [Naegleria gruberi]
 gi|284081521|gb|EFC35491.1| predicted protein [Naegleria gruberi]
          Length = 273

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            F      D+    I + N+    I +L     +   G+NL  G N +    + W+    
Sbjct: 2   RFDGSTPFDQRQSCIDKINDNTNNITVLLISTLAGCEGINL-MGANRVALIDVNWNPSHD 60

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + +      R  + G  + V++Y  I +NT+++LVL+R   K  + + +++
Sbjct: 61  SEAV-----CRVFRIGQLKPVYIYRFICENTMEDLVLKRQLQKENLSNWIVD 107


>gi|68065662|ref|XP_674815.1| PfSNF2L [Plasmodium berghei strain ANKA]
 gi|56493633|emb|CAH95809.1| PfSNF2L, putative [Plasmodium berghei]
          Length = 714

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +I++ F   ++ +   Q ++R       + G K+ V VY  + 
Sbjct: 1   LLSTRAGGIGINLTT-ADIVILFDSDYNPQMDIQAMDR-----AHRIGQKKRVIVYRFVT 54

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           QN+++E +++R   K  +  L++ 
Sbjct: 55  QNSVEEKIVERAAKKLKLDSLIIQ 78


>gi|115463703|ref|NP_001055451.1| Os05g0392400 [Oryza sativa Japonica Group]
 gi|113579002|dbj|BAF17365.1| Os05g0392400 [Oryza sativa Japonica Group]
          Length = 450

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNE 106
           + E      +++   F   L  +++   +              G+ L +    +I+ +N 
Sbjct: 239 LCEALKEK-VLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNN 297

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ 
Sbjct: 298 PDSDARVLLASTRACCEGISLT-GASRVVLLDVVWN-----PAVGRQAISRAFRIGQKKF 351

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ Y LI   T +     R   K  +  L+ +
Sbjct: 352 VYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 383


>gi|54287520|gb|AAV31264.1| unknown protein [Oryza sativa Japonica Group]
 gi|260401074|gb|ACX37088.1| helicase superfamily C-terminal domain containing protein [Oryza
           sativa Japonica Group]
          Length = 446

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNE 106
           + E      +++   F   L  +++   +              G+ L +    +I+ +N 
Sbjct: 235 LCEALKEK-VLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNN 293

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ 
Sbjct: 294 PDSDARVLLASTRACCEGISLT-GASRVVLLDVVWN-----PAVGRQAISRAFRIGQKKF 347

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ Y LI   T +     R   K  +  L+ +
Sbjct: 348 VYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 379


>gi|169826381|ref|YP_001696539.1| ATP-dependent helicase yqhH [Lysinibacillus sphaericus C3-41]
 gi|168990869|gb|ACA38409.1| Hypothetical ATP-dependent helicase yqhH [Lysinibacillus sphaericus
           C3-41]
          Length = 504

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 20/197 (10%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            Q+E+    +   +   N   +  +  ++          K      + K +    IIE+A
Sbjct: 306 LQKEMCSSKEATALTITNMLKEHGQSQEME-----DILAKLMALEVNSKAEKTIEIIEQA 360

Query: 67  NAAPIIVAYHFNSDLARLQ-KAFPQG-------RTLDKDPCTIQEWNEGKIPLLFAHPAS 118
               +I+   + +    LQ     +G          +K      +    +   +     +
Sbjct: 361 KDK-VIIFTEYRATQIYLQWYLHSKGISSVLFNGKFNKSKRDYMKHLFKERAQVLIATEA 419

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NLQ+  + ++ + L W+  + +Q I R+      + G +  V +Y L  ++TI+E
Sbjct: 420 GGEGINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEHDVHIYNLAIEDTIEE 473

Query: 179 LVLQRLRTKSTIQDLLL 195
            +L+ L TK  + + ++
Sbjct: 474 KILELLHTKIDVFEKVV 490


>gi|302831510|ref|XP_002947320.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
           nagariensis]
 gi|300267184|gb|EFJ51368.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
           nagariensis]
          Length = 986

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 48  WKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK------AFPQGRTLDKDP 98
           W++  + K  A+        +A+ A  ++  H    L  ++           G + D   
Sbjct: 680 WRDTAEIKKTAVAEYCSDLLEADGAKFLLFAHHKVLLDAVKSLKARYIRIDGGTSGDDRG 739

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++ E   + +      + G GL +    +++VF  L W   + QQ  +R       
Sbjct: 740 RLVKQFQEDADVKVAILSIKAAGVGLTMT-ASSLVVFAELSWVPGDIQQAEDRC-----H 793

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G   +V +++L+ + +IDEL+   L+ K +    +L+ 
Sbjct: 794 RIGQHTSVNIHFLLVRGSIDELMWDTLQNKLSDVGKVLDG 833


>gi|269795481|ref|YP_003314936.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097666|gb|ACZ22102.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 690

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       I  +  + ++ ++     + G GLNLQ   N LV   L W   E  Q I+R
Sbjct: 559 QTPKVREKNITAFVEDPEVQVVVCSLTAAGVGLNLQVASN-LVLAELSWTYAEQTQAIDR 617

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I      + G    V  + +IA  T+D  + + + +KS +    L+ 
Sbjct: 618 I-----HRIGQAEPVTAWRIIAAQTVDSRIAELIDSKSGLAARALDG 659


>gi|298530049|ref|ZP_07017451.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509423|gb|EFI33327.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 638

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 32  CLQL--ANGAVYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK 86
            LQ+     + Y  +          K+K LE I+++    +   +++   + +    + K
Sbjct: 299 LLQMRRVCDSTYLVDRNTRI---SPKLKELEGILDEIVVQSGRKMVIFSEWTTMTYLIAK 355

Query: 87  AFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              +             + K    I E+ N  +  +      S G GLNLQ   + ++ F
Sbjct: 356 QLSRMGINFVELSGKIPVHKRQALIDEFTNNPECKVFL-STDSGGTGLNLQ-AADCVLNF 413

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            L W+     Q I R+      + G     + V  L+++N+I+E +L  +  K+ +   +
Sbjct: 414 ELPWNPARLNQRIGRVN-----RIGQTSTSINVINLVSKNSIEEKILAGIHLKTELFSGV 468

Query: 195 LNA 197
            + 
Sbjct: 469 FDG 471


>gi|322500523|emb|CBZ35600.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1265

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
            +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 1054 DMNNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYL-RCAQHWLQAAGVSCALYSGS 1112

Query: 93   -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 1113 MTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 1171

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + RI      + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 1172 LNRI-----YRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 1210


>gi|146092157|ref|XP_001470221.1| DNA repair protein-like protein [Leishmania infantum]
 gi|134085015|emb|CAM69416.1| DNA repair protein-like protein [Leishmania infantum JPCM5]
          Length = 1265

 Score = 75.4 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
            +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 1054 DMNNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYL-RCAQHWLQAAGVSCALYSGS 1112

Query: 93   -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 1113 MTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 1171

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + RI      + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 1172 LNRI-----YRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 1210


>gi|149730550|ref|XP_001489638.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Equus
           caballus]
          Length = 1072

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR 92
           A   V     + +K+    K  A++  I+   + ++   +V  H  S L    +A  + +
Sbjct: 303 ATETVMGLITRIFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENK 362

Query: 93  TL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           T            ++     Q   + +  +      + G GL      + +VF  L+WD 
Sbjct: 363 TRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATH-VVFAELYWDP 421

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +Q  +R       + G   +V ++YLIA+ T+D L+   L  K+ +    LN  K++
Sbjct: 422 GHIKQAEDR-----AHRIGQCSSVNIHYLIAKGTLDTLMWGMLNRKAQVTGSTLNGRKEQ 476


>gi|258565611|ref|XP_002583550.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907251|gb|EEP81652.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1056

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGK-IPLLFAHPASC 119
            +V   + S L  ++ A                 L +    +  + +   I +L A   + 
Sbjct: 904  VVFSAWTSHLDLIEIALQDSGITGFTRLDGTMSLKQRNAALDAFRDDDNITVLLATLGAG 963

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL     + V     ++     Q I+R+      + G  R V     I + +I+E 
Sbjct: 964  GVGLNLTSASRVYVM-EPQYNPAAVAQAIDRV-----HRLGQTREVTTVQFIMKESIEEK 1017

Query: 180  VLQRLRTKSTIQDLLLNALKKE 201
            + +  + K  + ++ LN  K +
Sbjct: 1018 IAELAKKKQQLANMSLNRGKSD 1039


>gi|68637851|emb|CAI36056.1| superfamily II DNA/RNA helicase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 652

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|157871832|ref|XP_001684465.1| DNA repair protein-like protein [Leishmania major]
 gi|68127534|emb|CAJ05555.1| DNA repair protein-like protein [Leishmania major strain Friedlin]
          Length = 922

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           +  +W      K + L   I        ++V   F + L R  + + Q            
Sbjct: 712 DMSNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYL-RCAQHWLQAAGVSCALYSGS 770

Query: 93  -TLDKDPCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            T+ +    ++ +++   P    +L A  +SCG GLNL    N        W+    +Q 
Sbjct: 771 MTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLTC-ANHCFLMEPSWNPGTEEQA 829

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + RI      + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 830 LNRI-----YRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 868


>gi|296333385|ref|ZP_06875838.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675109|ref|YP_003866781.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149583|gb|EFG90479.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413353|gb|ADM38472.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 557

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           ++  +   + K   +  +I+K +   +I+   + +    LQ    Q         G    
Sbjct: 350 DRINQVTQNSKALQVIDLIKKIDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKR 408

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +++   GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI    
Sbjct: 409 GKKDWMKDLFRGKVQVLIA-TEAGGEGINLQF-CNHMINYDLPWNPMRLEQRIGRI---- 462

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 463 -HRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVV 501


>gi|323455652|gb|EGB11520.1| hypothetical protein AURANDRAFT_17567 [Aureococcus anophagefferens]
          Length = 100

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L       G GLNL    N +     WW+    +Q ++R+      + G  R V    L
Sbjct: 1   VLLVSLKCGGTGLNLTR-ANHVFLLDTWWNAAVEEQAMDRV-----HRLGQTRPVTAVRL 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +A  T++  +L   + K+ +    L  L  + +
Sbjct: 55  VADKTVESRILDIQQAKTLVSAGALARLSADEV 87


>gi|146229770|gb|ABQ12335.1| global transactivator-like protein [Antheraea pernyi
           nucleopolyhedrovirus]
          Length = 495

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 31/194 (15%)

Query: 28  KTVKCLQLANG---AVYYDEEKHWKEVHD---------EKIKALEVIIEKANAAPIIVAY 75
              +  Q+      A   D  K    + +           ++ ++ +++  +   ++V+ 
Sbjct: 293 LLCRLRQMCCHPALAKCADLFKEQAHIFEPGYKSSKCRRALELVQRVLDSPDDKVVLVSQ 352

Query: 76  H--FNSDLARLQKAFP------QGRTLDKDPCTIQ-EWNEGKIP--LLFAHPASCGHGLN 124
              F   +A   +A         GR   ++   ++  +N+   P  +L       G GLN
Sbjct: 353 WVEFLHIVAEQLRALSVPVLLYTGRLRTEERAAVENRFNDADSPYRVLLMSIKCGGVGLN 412

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQ 182
           L  GGN LV     W+ +   Q   RI      + G ++   VY ++   +N+++  +  
Sbjct: 413 LT-GGNHLVLLEPHWNPQVELQAQGRI-----HRLGQRKRAHVYKMLVDEENSVERYMKT 466

Query: 183 RLRTKSTIQDLLLN 196
           R   K    D + +
Sbjct: 467 RQDKKLEFVDKVFD 480


>gi|125552219|gb|EAY97928.1| hypothetical protein OsI_19844 [Oryza sativa Indica Group]
          Length = 1367

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNE 106
            + E      +++   F   L  +++   +              G+ L +    +I+ +N 
Sbjct: 1156 LCEALKEK-VLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNN 1214

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ 
Sbjct: 1215 PDSDARVLLASTRACCEGISLT-GASRVVLLDVVWN-----PAVGRQAISRAFRIGQKKF 1268

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1269 VYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1300


>gi|40882176|emb|CAF06002.1| related to protein RIS1 [Neurospora crassa]
          Length = 1226

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 43   DEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
            D +         K   L+ II    + A    IIV  H+   L R+     Q   +D   
Sbjct: 990  DRKHTVNMTPSAKTTRLKDIILEWQKDAPDDKIIVFTHWIL-LGRILGRVLQQEKIDFLY 1048

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     ++          +I +L +     G  LNL    N +V    WW+    +Q
Sbjct: 1049 LFGGMGPTVREDQIKAFQTNPRIKVLVSSLRVGGQSLNL-AAANRVVILDAWWNNGMEKQ 1107

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               R+      + G K+  +   ++A+NTID+ ++     K
Sbjct: 1108 AFGRVF-----RFGQKKESWFTRILAKNTIDKRIIDLQEDK 1143


>gi|16079514|ref|NP_390338.1| RNA polymerase-associated helicase protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310381|ref|ZP_03592228.1| hypothetical protein Bsubs1_13471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314705|ref|ZP_03596510.1| hypothetical protein BsubsN3_13392 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319628|ref|ZP_03600922.1| hypothetical protein BsubsJ_13313 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323904|ref|ZP_03605198.1| hypothetical protein BsubsS_13442 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731040|sp|P54509|YQHH_BACSU RecName: Full=Uncharacterized ATP-dependent helicase yqhH
 gi|1303889|dbj|BAA12545.1| YqhH [Bacillus subtilis]
 gi|2634892|emb|CAB14389.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 557

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           ++  +   + K   +  +I+K +   +I+   + +    LQ    Q         G    
Sbjct: 350 DRINQVTQNSKALQVVDLIKKIDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKR 408

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +++   GKI +L A   + G G+NLQ+  N ++ + L W+    +Q I RI    
Sbjct: 409 GKKDWMKDLFRGKIQVLIA-TEAGGEGINLQF-CNHMINYDLPWNPMRLEQRIGRI---- 462

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 463 -HRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVV 501


>gi|152976625|ref|YP_001376142.1| SNF2-related protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025377|gb|ABS23147.1| SNF2-related protein [Bacillus cytotoxicus NVH 391-98]
          Length = 560

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 21/167 (12%)

Query: 41  YYD--EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
           Y D   EK      + K      +I+K N   +++   + +    LQ    Q        
Sbjct: 344 YIDVLMEKINHISFNSKANQTLELIKKINDK-VVIFTEYRASQMYLQWFLKQHGISSVPF 402

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    K     + + +     +     + G G+NLQ+  N ++ + L W+    +Q I
Sbjct: 403 RGGFKRGKKDWMKELFQQHAQ--VLIATEAGGEGINLQF-CNHMINYDLPWNPMRLEQRI 459

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 460 GRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|331700042|ref|YP_004336281.1| helicase domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954731|gb|AEA28428.1| helicase domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 716

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              Q RT       +  +  +  + +      + G GLNLQ   +I V   L W   E  
Sbjct: 581 RGEQSRT--ARQQNVDAFVEDPDVAIAVCSLTAAGVGLNLQVASDI-VLAELSWTAAEQT 637

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I+R       + G    V  + +IA  TID  + + +  K  +    L+ 
Sbjct: 638 QAIDRC-----HRIGQTEPVTAWRIIAAQTIDARIAELIDDKGNLAAQALDG 684


>gi|9630851|ref|NP_047448.1| GTA [Bombyx mori NPV]
 gi|3745870|gb|AAC63717.1| GTA [Bombyx mori NPV]
          Length = 506

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 34/196 (17%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEK------------IKALEVIIEKANAAPIIVAY 75
             +K  Q+          ++  E +D              +  ++ I+  ++   I+V  
Sbjct: 303 LILKLRQICCHPYLAMHGRNLLETNDCFKMDYMSSKCKRVLDLVDDILNTSDDKIILV-S 361

Query: 76  HFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHG 122
            +   L   +  F Q            +  D+        N       +L       G G
Sbjct: 362 QWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVG 421

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTIDELV 180
           LNL  GGN +V     W+ +   Q  +RI      + G  +  +VY +  +  N+I++ +
Sbjct: 422 LNL-IGGNHIVMLEPHWNPQIELQAQDRIS-----RMGQTKNTYVYKMLNVEDNSIEKYI 475

Query: 181 LQRLRTKSTIQDLLLN 196
            QR   K    + +  
Sbjct: 476 KQRQDKKIAFVNTVFE 491


>gi|291484902|dbj|BAI85977.1| hypothetical protein BSNT_03666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 557

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           ++  +   + K   +  +I+K +   +I+   + +    LQ    Q         G    
Sbjct: 350 DRINQVTQNSKALQVVDLIKKIDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKR 408

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +++   GKI +L A   + G G+NLQ+  N ++ + L W+    +Q I RI    
Sbjct: 409 GKKDWMKDLFRGKIQVLIA-TEAGGEGINLQF-CNHMINYDLPWNPMRLEQRIGRI---- 462

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 463 -HRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVV 501


>gi|66044767|ref|YP_234608.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255474|gb|AAY36570.1| SNF2-related:Helicase, C-terminal [Pseudomonas syringae pv.
           syringae B728a]
          Length = 650

 Score = 75.4 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|312072535|ref|XP_003139110.1| hypothetical protein LOAG_03525 [Loa loa]
 gi|307765725|gb|EFO24959.1| hypothetical protein LOAG_03525 [Loa loa]
          Length = 770

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           Q     +      + N  +  L+     +   G N+    N +V F   W+     Q + 
Sbjct: 408 QTSKRHEIQTKFNDPNNLRARLMLISTRAGSLGTNM-VAANRVVIFDACWNPSHDTQSLF 466

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R+      + G  + V++Y  IAQ T++E + +R  TK +    +++  + E
Sbjct: 467 RV-----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIE 513


>gi|96979867|ref|YP_611073.1| global transactivator [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983400|gb|ABF50340.1| global transactivator [Antheraea pernyi nucleopolyhedrovirus]
          Length = 495

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 31/194 (15%)

Query: 28  KTVKCLQLANG---AVYYDEEKHWKEVHD---------EKIKALEVIIEKANAAPIIVAY 75
              +  Q+      A   D  K    + +           ++ ++ +++  +   ++V+ 
Sbjct: 293 LLCRLRQMCCHPALAKCADLFKEQAHIFEPGYKSSKCRRALELVQRVLDSPDDKVVLVSQ 352

Query: 76  H--FNSDLARLQKAFP------QGRTLDKDPCTIQ-EWNEGKIP--LLFAHPASCGHGLN 124
              F   +A   +A         GR   ++   ++  +N+   P  +L       G GLN
Sbjct: 353 WVEFLHIVAEQLRALSVPVLLYTGRLRTEERAAVENRFNDADSPYRVLLMSIKCGGVGLN 412

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQ 182
           L  GGN LV     W+ +   Q   RI      + G ++   VY ++   +N+++  +  
Sbjct: 413 LT-GGNHLVLLEPHWNPQVELQAQGRI-----HRLGQRKRAHVYKMLVDEENSVERYMKT 466

Query: 183 RLRTKSTIQDLLLN 196
           R   K    D + +
Sbjct: 467 RQDKKLEFVDKVFD 480


>gi|321311942|ref|YP_004204229.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis BSn5]
 gi|320018216|gb|ADV93202.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis BSn5]
          Length = 557

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           ++  +   + K   +  +I+K +   +I+   + +    LQ    Q         G    
Sbjct: 350 DRINQVTQNSKALQVVDLIKKIDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKR 408

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +++   GKI +L A   + G G+NLQ+  N ++ + L W+    +Q I RI    
Sbjct: 409 GKKDWMKDLFRGKIQVLIA-TEAGGEGINLQF-CNHMINYDLPWNPMRLEQRIGRI---- 462

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 463 -HRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVV 501


>gi|222631484|gb|EEE63616.1| hypothetical protein OsJ_18433 [Oryza sativa Japonica Group]
          Length = 1364

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNE 106
            + E      +++   F   L  +++   +              G+ L +    +I+ +N 
Sbjct: 1153 LCEALKEK-VLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNN 1211

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ 
Sbjct: 1212 PDSDARVLLASTRACCEGISLT-GASRVVLLDVVWN-----PAVGRQAISRAFRIGQKKF 1265

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1266 VYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1297


>gi|237801981|ref|ZP_04590442.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024839|gb|EGI04895.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 651

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|289615990|emb|CBI57341.1| unnamed protein product [Sordaria macrospora]
          Length = 1811

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            L K       + K    I+++N +  + +      + G GLN+  G N +V F   +   
Sbjct: 1373 LHKRLDGSTPVGKRQAAIKDFNTDNSLDVYLISTKAGGVGLNI-PGANRVVLFDFGFTPA 1431

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            E QQ + R       + G K+ VFVY+L    T +  +
Sbjct: 1432 EEQQAVGR-----AYRIGQKKDVFVYHLKVGGTYETAI 1464


>gi|159164911|gb|ABV80240.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNEG 107
            + +A    +++   F   L  +++   +              G+ L +    +I+ +N  
Sbjct: 1226 LSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNP 1285

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ V
Sbjct: 1286 NNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNPV-----VGRQAISRAFRIGQKKFV 1339

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + Y LI   T +     R   K  +  L+ +
Sbjct: 1340 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|224541746|ref|ZP_03682285.1| hypothetical protein CATMIT_00918 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525350|gb|EEF94455.1| hypothetical protein CATMIT_00918 [Catenibacterium mitsuokai DSM
           15897]
          Length = 716

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 16/157 (10%)

Query: 50  EVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCT 100
               +  + LE+I E       +IV   +   + ++ K              +       
Sbjct: 536 HDSSKACRMLEIIQEAKEEGRKVIVFSFYLDTIRKISKLLGNQCTEIINGSVSPKHRQEI 595

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I E+       +L +   + G GLN+Q   ++++            Q I R       + 
Sbjct: 596 IDEFESAPAGSVLLSQIMAGGTGLNIQ-SASVVIICEPQIKPSIESQAISR-----AYRM 649

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  R V VY L+  +TIDE +   L  K+ + +   +
Sbjct: 650 GQSRNVLVYRLLCNDTIDERITDILTRKTNVFNAFAD 686


>gi|109522620|ref|YP_655432.1| gp53 [Mycobacterium phage PLot]
 gi|88910727|gb|ABD58652.1| gp53 [Mycobacterium phage PLot]
          Length = 647

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 39/230 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHD 53
           +K Y    ++    L+   + A    ++  +  Q+A    Y D       E+     +  
Sbjct: 412 LKAYQAMVKDAAVKLESGVLSANGVLAEMTRLKQMACS--YGDLAIAPTGEQTFRPSLPS 469

Query: 54  EKIKALEVIIEKAN--------AAPIIVAYHFNSDLAR---------LQKAFPQGRTLDK 96
            K   L  ++               +IVA  F   L           ++     G   +K
Sbjct: 470 NKFDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYAELNKLGIKCHLLTGAISEK 529

Query: 97  DP-CTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +       +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R
Sbjct: 530 ERVRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDR 588

Query: 151 IGVTRQRQAGF-KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +       V ++ L +  +I+E +      +      +++  +
Sbjct: 589 -----AHRISRTDHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGAR 633


>gi|190352247|gb|ACE76519.1| Smarca4-like protein [Sus scrofa]
          Length = 244

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +NE   +  +      + G GLNLQ   + ++ F   W+  +  Q      
Sbjct: 5   EDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNPHQDLQA----- 58

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L   N+++E  L   + K  +   ++ A
Sbjct: 59  QDRAHRIGQQNEVRVLRLCTVNSVEEKFLAAAKYKLNVDQKVIQA 103


>gi|71653576|ref|XP_815423.1| DNA excision/repair protein SNF2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70880477|gb|EAN93572.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 773

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           D ARL    P    L     T+Q +N+ + + +        G GL ++    +++     
Sbjct: 503 DFARLDGDVPAEERL----KTVQGFNQSERLLVCLLTTQVGGVGLTVEAASAVIIM-DPS 557

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           W+     Q I+R+      + G  R V VY LI   T++E V +    K      
Sbjct: 558 WNPSSDAQAIDRV-----HRIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 607


>gi|330841728|ref|XP_003292844.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
 gi|325076886|gb|EGC30638.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
          Length = 931

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 26/180 (14%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG-- 91
           +NG V     + ++E    K+K+    I K        ++  H +  +  L+ A  +   
Sbjct: 75  SNGLVKGQIMELYRETGKAKLKSSCEYISKLIKEKEKFLIFAHHSDIMDGLESAIQKSKA 134

Query: 92  ---RTLDKDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              R     P  +++             +      + G GL L    N++VF  L+W   
Sbjct: 135 GYIRIDGSTPAVLRQTYVNKFQTNSSCQVALLSITAAGTGLTLT-ASNLVVFVELYWTPG 193

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV-------LQRLRTKSTIQDLLL 195
             +Q  +R+      + G  + V+++YLI +NT+D+ +       L+ L      Q+ +L
Sbjct: 194 VLRQAEDRV-----HRIGQTKDVYIHYLIGKNTLDDRIWPIICNKLEVLGETLDGQEEIL 248


>gi|284991028|ref|YP_003409582.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284064273|gb|ADB75211.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 714

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + N+  + +      + G GLNLQ   NI V   L W   E  Q I+R    
Sbjct: 585 SRQRNIDAFVNDPDVAVAVCSLTAAGVGLNLQVASNI-VLAELSWTDAEQTQAIDR---- 639

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G    V  + +IA  TID  + + + +K+ +    L+ 
Sbjct: 640 -SHRIGQTEPVTAWRIIAAQTIDARIAELIDSKAGLAARALDG 681


>gi|163941989|ref|YP_001646873.1| non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864186|gb|ABY45245.1| Non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 560

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +IE+ +   +I+   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIEEVDDK-VIIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|327260656|ref|XP_003215150.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Anolis carolinensis]
          Length = 1095

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 21/170 (12%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + +    +V  H  S L    +A  + +T            
Sbjct: 314 KQTAIAKAGAVKDYIKMLLENDNLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVASS 373

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 374 ERINLVNQFQKDPDTRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR---- 428

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  KKE + 
Sbjct: 429 -AHRIGQCSSVNIHYLIANGTMDPLMWAMLNRKARVTGTTLNG-KKEKLQ 476


>gi|66812928|ref|XP_640643.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60468538|gb|EAL66541.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 1021

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 22/153 (14%)

Query: 60  EVIIEKANAAPIIVAYHFN-------SDLARLQKAFPQGRTL---------DKDPCTIQE 103
           E +++       ++  H           L +++    +   +         +++      
Sbjct: 638 EKLVDAPIDQKFLIFAHHKEVINGIVHMLGKIKVDKKKLEFIKIDGSTPAQNRNDYVNDF 697

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+    +      + G GL L      ++F  L W      Q  +R       + G   
Sbjct: 698 QNDPNCRVAVLSITAAGTGLTLT-AATCVIFAELSWTPGVLFQAEDR-----AHRYGQTS 751

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +V V YLIA  T+DE++   + +K T+   +L+
Sbjct: 752 SVLVQYLIALGTVDEMIWSLVESKKTLLGRVLD 784


>gi|326478247|gb|EGE02257.1| SNF2 family helicase [Trichophyton equinum CBS 127.97]
          Length = 979

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC 99
             K++A+++ +    +++    I +   F   +  +         +     G+   +   
Sbjct: 748 SAKLRAVKLFVSKWLKESPNIKITIFTQFLGMIGAISSICEAEGWRYITLCGKLHHRTRH 807

Query: 100 T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ + E  + +L +   + G GLNL    +  +   LWW+    QQ   R+      +
Sbjct: 808 ANIKRFREENVSILISSLKAGGVGLNLTM-ASKCILVDLWWNEAIEQQAFCRLF-----R 861

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            G K  V +  +  +NT+D+ +      KS 
Sbjct: 862 IGQKNDVEIVRICVENTVDDRLQLIQSRKSE 892


>gi|85085493|ref|XP_957522.1| hypothetical protein NCU04445 [Neurospora crassa OR74A]
 gi|28918614|gb|EAA28286.1| predicted protein [Neurospora crassa OR74A]
          Length = 1139

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 43   DEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
            D +         K   L+ II    + A    IIV  H+   L R+     Q   +D   
Sbjct: 903  DRKHTVNMTPSAKTTRLKDIILEWQKDAPDDKIIVFTHWIL-LGRILGRVLQQEKIDFLY 961

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     ++          +I +L +     G  LNL    N +V    WW+    +Q
Sbjct: 962  LFGGMGPTVREDQIKAFQTNPRIKVLVSSLRVGGQSLNL-AAANRVVILDAWWNNGMEKQ 1020

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               R+      + G K+  +   ++A+NTID+ ++     K
Sbjct: 1021 AFGRVF-----RFGQKKESWFTRILAKNTIDKRIIDLQEDK 1056


>gi|134081676|emb|CAK46610.1| unnamed protein product [Aspergillus niger]
          Length = 1189

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 24/171 (14%)

Query: 43   DEEKHWK-----EVHDEKIKALEVIIEK--ANAAP--IIVAYHFNSDLARLQ-----KAF 88
            DE+  W       +   K+  +  I+ +  A  +P  I++   F   +  L      + +
Sbjct: 962  DEDTDWIKACARHMPSAKLTKIREILTEWLAQDSPGKIVIFTQFLDFVQILATMCQAENW 1021

Query: 89   PQGRTLDKDPCTIQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            P      K    ++E N       + +  ++ A   + G GL+L    N  +   LWW+ 
Sbjct: 1022 PYVLLTGKLSLAVRENNMTLFSDKDSEKRIMIASLKAGGTGLDL-SAANKCILVDLWWNE 1080

Query: 142  EEHQQ--MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +Q   +      R  + G +  V    LI +N+ID+ +L     K+ I
Sbjct: 1081 AIQEQLLTLPFQAFCRLFRIGQESEVEFVKLIIENSIDDYLLNLQTHKTAI 1131


>gi|308498547|ref|XP_003111460.1| CRE-XNP-1 protein [Caenorhabditis remanei]
 gi|308241008|gb|EFO84960.1| CRE-XNP-1 protein [Caenorhabditis remanei]
          Length = 1391

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 95   DKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K       +N  +     L+     +   G N+    N ++ F   W+     Q + R+
Sbjct: 1052 GKRDSVQTHFNSPENLRARLMLISTRAGSLGTNM-VAANRVIIFDACWNPSHDTQSLFRV 1110

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1111 -----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD 1150


>gi|326923079|ref|XP_003207769.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
           domain-containing protein 3-like [Meleagris gallopavo]
          Length = 1262

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 46  KHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-------- 94
           + +KE    K  A++  I    + +    +V  H  S L    +A  + +          
Sbjct: 480 RMYKETAIAKAGAVKDYIRMMLENDKLKFLVFAHHLSMLQACAEAVIENKVRYIRIDGSV 539

Query: 95  ---DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R 
Sbjct: 540 PSAERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR- 597

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 + G   +V +++LIA+ T+D L+   L  K+ +    LN  K+  
Sbjct: 598 ----AHRIGQCSSVNIHFLIAKGTLDPLMWAMLNRKAKVTGSTLNGKKERM 644


>gi|226290585|gb|EEH46069.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1761

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DPCTIQEWNEGK-IPLLFAHP 116
               +++  H    L  L+    Q GRT  +            + + +N G    +     
Sbjct: 1356 GDKVLLFSHSIPTLNYLEHVLRQAGRTYSRLDGKTPIATRQISTKNFNSGSYTQVYLIST 1415

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLN+  G N ++ F   ++    +Q + R       + G ++ VFVY  +A  T 
Sbjct: 1416 RAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR-----AYRLGQRKPVFVYRFLAGGTF 1469

Query: 177  DELVLQRLRTKSTIQDLLLNAL 198
            ++++  +   K+ +   +++ +
Sbjct: 1470 EDIMHNKAVFKTQLSYRVVDKM 1491


>gi|296809167|ref|XP_002844922.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma otae CBS
            113480]
 gi|238844405|gb|EEQ34067.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma otae CBS
            113480]
          Length = 1771

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 18/152 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            H  +I+ +  I++++      +++   +   L  +         +     G+T +     
Sbjct: 1308 HSRRIQMVGQIVDESIKAGDKVLIFSGYLYTLTYIGTMLAAKGQKFCRLDGKTPIATRQA 1367

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + ++     +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1368 ATKSFSNSDSQVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1421

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            G  + VFVY  +   T +EL+ ++   K  + 
Sbjct: 1422 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMA 1453


>gi|225678359|gb|EEH16643.1| XNP-1 [Paracoccidioides brasiliensis Pb03]
          Length = 1657

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DPCTIQEWNEGK-IPLLFAHP 116
               +++  H    L  L+    Q GRT  +            + + +N G    +     
Sbjct: 1256 GDKVLLFSHSIPTLNYLEHVLRQAGRTYSRLDGKTPIATRQISTKNFNSGSYTQVYLIST 1315

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLN+  G N ++ F   ++    +Q + R       + G ++ VFVY  +A  T 
Sbjct: 1316 RAGGLGLNI-PGANRVIIFDFQFNPTWEEQAVGR-----AYRLGQRKPVFVYRFLAGGTF 1369

Query: 177  DELVLQRLRTKSTIQDLLLNAL 198
            ++++  +   K+ +   +++ +
Sbjct: 1370 EDIMHNKAVFKTQLSYRVVDKM 1391


>gi|195152255|ref|XP_002017052.1| GL22086 [Drosophila persimilis]
 gi|194112109|gb|EDW34152.1| GL22086 [Drosophila persimilis]
          Length = 1712

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 64   EKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKI 109
            E  +    ++     + L  ++                       +    +  +N +  I
Sbjct: 1498 ESVSQHRALIFCQLKAMLDIVEHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSI 1557

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L       G GLNL  G + ++F    W+  +  Q ++R       + G K+ V VY 
Sbjct: 1558 DVLLLTTLVGGLGLNLT-GADTVIFVEHDWNPMKDLQAMDR-----AHRIGQKKVVNVYR 1611

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI +N+++E ++   + K    + +++A
Sbjct: 1612 LITRNSLEEKIMGLQKFKILTANTVVSA 1639


>gi|330894793|gb|EGH27454.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 650

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMDVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|168000545|ref|XP_001752976.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162695675|gb|EDQ82017.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 653

 Score = 75.0 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKA------FPQGRTLDK- 96
                    K++ +  ++++ N A   +++   +   LA ++        + +G  + + 
Sbjct: 447 GDVDVKAGAKLRWVLDMVQQCNDAKEKLLIFSEYLYSLALIENMAVQRMKWSKGLQILRL 506

Query: 97  --------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                         ++N + ++ +L A   +CG G++L  G + ++   + W+    +Q 
Sbjct: 507 DGSLPPQERERVQHKFNTDPEVRVLCASIKACGEGISL-VGASRVILLEVLWNPSVPRQA 565

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLN 196
           I R       + G +R V VY LIA  T +E  +      K  +  LL +
Sbjct: 566 ISR-----AFRIGQQRKVVVYRLIAAGTYEEMNMHAAATRKEWLSRLLFD 610


>gi|242060152|ref|XP_002451365.1| hypothetical protein SORBIDRAFT_04g000808 [Sorghum bicolor]
 gi|241931196|gb|EES04341.1| hypothetical protein SORBIDRAFT_04g000808 [Sorghum bicolor]
          Length = 160

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           PL        G G+NL    + ++      +  +  Q ++R       + G  R V VY 
Sbjct: 39  PLFLLTTKVGGVGINLT-AASRVIIIDPSDNPCDDNQAVDR-----TYRIGQVRDVIVYR 92

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           L+   TI+E   ++   K    + +L  
Sbjct: 93  LVTCGTIEEHTYRQQTLKVETSNDVLEG 120


>gi|170781504|ref|YP_001709836.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156072|emb|CAQ01209.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 688

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +        N+ ++ ++     + G GLNLQ   N +V   L W   E  Q I+R+    
Sbjct: 566 RQNAIDSFQNDPEVKVVVCSLTAAGVGLNLQAASN-VVLAELSWTSAEETQAIDRV---- 620

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +  V  + +IA  TID  + + +  K+ +    L+ 
Sbjct: 621 -HRIGQEEPVTAWRIIAAQTIDAKLAELIDGKAGLAARALDG 661


>gi|309355669|emb|CAP38453.2| CBR-RAD-26 protein [Caenorhabditis briggsae AF16]
          Length = 1340

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 58   ALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------------- 97
            ALE++ E       I++     + L  L++   + + + K+                   
Sbjct: 849  ALEILDESTKIGEKILIFSQNLTALDMLEEILRKRQVVKKEKSEHQERWEKNRNYLRLDG 908

Query: 98   -------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      I  +N E  + L      +   G+NL    N  +     W+     Q + 
Sbjct: 909  TTSGADREKLINRFNSEPGLHLFLISTRAGSLGINL-VSANRCIIIDACWNPCHDAQAV- 966

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 R  + G ++  FVY LI  N+++  +  R  +K  +Q  +++  + + 
Sbjct: 967  ----CRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDA 1015


>gi|302851167|ref|XP_002957108.1| hypothetical protein VOLCADRAFT_107529 [Volvox carteri f.
            nagariensis]
 gi|300257515|gb|EFJ41762.1| hypothetical protein VOLCADRAFT_107529 [Volvox carteri f.
            nagariensis]
          Length = 1252

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+CGHG       + ++    WW+    QQ  +RI      + G  + + V   +   TI
Sbjct: 951  AACGHGFCRTCVIDHVMLMDPWWNPAVEQQAQDRI-----HRLGQYKPITVVRFVIAGTI 1005

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +E +L+    K  + +   + ++  T+ V
Sbjct: 1006 EERILKLQEKKQLVFEG-CSGVQGRTMAV 1033


>gi|315048351|ref|XP_003173550.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
            CBS 118893]
 gi|311341517|gb|EFR00720.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
            CBS 118893]
          Length = 1808

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 18/152 (11%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRT-LDKDPC 99
            +  + + +  I++++      +++   +   L  L         +     G+T +     
Sbjct: 1314 NSHRTQMVGRIVDESIKTGDKVLIFSGYLHTLTYLGSMLEARGQKFCRLDGKTPIATRQT 1373

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + +++    +      +   GLN+  G N ++ F   ++    +Q I R       + 
Sbjct: 1374 ATKNFSDSDAHVYLISTKAGALGLNI-IGANRVIIFESEYNPTWEEQAIGR-----AYRL 1427

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            G  + VFVY  +   T +EL+ ++   K  + 
Sbjct: 1428 GQAKDVFVYRFVMGGTFEELIHEKGVFKKNMA 1459


>gi|145546039|ref|XP_001458703.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426524|emb|CAK91306.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1228

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLF 113
            +      ++   +   +  L++ F +             +++    IQ +        L 
Sbjct: 1069 QLKREKCLIFTQWIDMIRLLEEKFQEEEIWCQVVTGAMSVEQRNKVIQSFEQHPAFTALI 1128

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   GLNL    N +     WW+     Q I R       + G K+ V V   +  
Sbjct: 1129 LSLRATSTGLNLTM-ANHVFLVDPWWNPAIEDQAIGR-----ADRIGQKKQVNVIRFLCA 1182

Query: 174  NTIDELV-LQRLRTKSTIQDLLLNALKK 200
            NTI+E + L   + K  I+ ++ N  KK
Sbjct: 1183 NTIEEKINLLHQKKKKMIRKVIANDQKK 1210


>gi|297800006|ref|XP_002867887.1| hypothetical protein ARALYDRAFT_914628 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313723|gb|EFH44146.1| hypothetical protein ARALYDRAFT_914628 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 94

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + +     WW+    +Q I RI      + G KR VFV   I ++
Sbjct: 2   SLKAGGVGLNLT-ATSSVFLMDPWWNPAVEEQAIMRI-----HRIGQKRTVFVRRFIVKD 55

Query: 175 TIDELVLQRLRTKSTIQD 192
           T++E + Q    K  + D
Sbjct: 56  TVEERMQQVQARKQRMID 73


>gi|229086801|ref|ZP_04218964.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-44]
 gi|228696522|gb|EEL49344.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-44]
          Length = 560

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 41  YYD--EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRT 93
           Y D   +K      + K      +I++ +   +++   + +    LQ    Q        
Sbjct: 344 YIDVLMDKINHIPFNSKANQALELIKEIDDK-VVIFTEYRATQMYLQWFLKQHGISSVPF 402

Query: 94  LDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q 
Sbjct: 403 RGGFKRGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQR 458

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 459 IGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|209881905|ref|XP_002142390.1| helicase  [Cryptosporidium muris RN66]
 gi|209557996|gb|EEA08041.1| helicase conserved C-terminal domain-containing protein
           [Cryptosporidium muris RN66]
          Length = 836

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
           D++      H E + A+E I+ K      +   + +    R+    P  +   ++    +
Sbjct: 676 DDKFVIFGHHHEMLDAIETILVKRKRNKSLSEINKHFVYIRIDGKTPGNK---REEYVKE 732

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N     +      +CG GLNL   G  ++F  L+W      Q  +R       + G +
Sbjct: 733 FQNNINCKVAVLSITACGQGLNLTSAG-TVIFAELYWVPGFMLQAEDRC-----HRMGTQ 786

Query: 163 RAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   ++YL+A+NT+D+ +   L  K  I    L+ +
Sbjct: 787 YSCINIHYLVAENTLDDKMWGILYKKQKIMASTLDGI 823


>gi|14334972|gb|AAK59663.1| putative chromatin remodelling complex ATPase chain ISWI
           [Arabidopsis thaliana]
          Length = 538

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+   +I+ +N+   +  +      + G G+NL    ++++ +   W+ +   Q      
Sbjct: 17  DERDASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQA----- 70

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+ V V+    +N I+  V++R   K  +  L++ 
Sbjct: 71  QDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 114


>gi|228992971|ref|ZP_04152895.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus
           pseudomycoides DSM 12442]
 gi|228999020|ref|ZP_04158602.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock3-17]
 gi|229006568|ref|ZP_04164204.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock1-4]
 gi|228754707|gb|EEM04116.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock1-4]
 gi|228760637|gb|EEM09601.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock3-17]
 gi|228766828|gb|EEM15467.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus
           pseudomycoides DSM 12442]
          Length = 560

 Score = 74.6 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 41  YYD--EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRT 93
           Y D   +K      + K      +I++ +   +++   + +    LQ    Q        
Sbjct: 344 YIDVLMDKINHIPFNTKANQALELIKEIDDK-VVIFTEYRATQMYLQWFLKQHGISSVPF 402

Query: 94  LDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q 
Sbjct: 403 RGGFKRGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQR 458

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 459 IGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|322499423|emb|CBZ34496.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1273

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 76/204 (37%), Gaps = 15/204 (7%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN- 67
            EL                K +  ++L   A+  DE+     +  + +  LE +I K N 
Sbjct: 780 EELCVPPSLNYTPLLEDGVKLLVAIKLVAAAMARDEKVLLFSLSTQLLTFLESMIAKVNI 839

Query: 68  --AAPII-VAYHFNSDL-ARLQKAFPQGRT-LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
               P+  +    +  L  R++     G     +    +++++    P L      + G 
Sbjct: 840 EWRRPVAALQRQQHPQLPRRIRYCRLDGSHSAAQRAAMLEDFDRPDGPELFLLSTKAGGV 899

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+ +      ++     ++  + QQ I R       + G  R V+VY L+   T++  + 
Sbjct: 900 GITVT-AATRVILVDTSFNPADDQQAIGR-----AYRYGQTRPVYVYRLMCYPTLEYSIF 953

Query: 182 QRLRTKSTIQDLLLN--ALKKETI 203
            +   K  +   ++   ++K++ +
Sbjct: 954 VQKLAKEWLFKTVIEESSVKRDGL 977


>gi|154302115|ref|XP_001551468.1| hypothetical protein BC1G_09738 [Botryotinia fuckeliana B05.10]
 gi|150855512|gb|EDN30704.1| hypothetical protein BC1G_09738 [Botryotinia fuckeliana B05.10]
          Length = 1176

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 21/206 (10%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAV--YYDEEKHWKEVHDEKIKALEVIIEKANA 68
            ++  L+ E ++    +    K    A   +  Y         +  + + + +    + N 
Sbjct: 957  MFFSLKQEEVDKEEESRLKTKESAKAGKDLSNYGGPHTKTIALIHDLLASRKESQARPNE 1016

Query: 69   API--IVAYHFNSDLARLQ-----KAFPQGR-----TLDKDPCTIQEW-NEGKIPLLFAH 115
             PI  +V   + + L  +Q        P  R     T       ++ +  +  I ++   
Sbjct: 1017 PPIKSVVFSGWTTHLDLIQLALQENNIPYTRLDGKMTRIARSMAMENFREDPSIVVILVS 1076

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             A+ G GLNL     + V     ++     Q I+R+      + G KR V     I   +
Sbjct: 1077 IAAGGLGLNLTTANKVYVM-EPQFNPAAEAQAIDRV-----HRLGQKREVQTVRFIMNKS 1130

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKE 201
             +E +LQ    K  +  L +++ K  
Sbjct: 1131 FEEKMLQIQDKKQKLASLSMDSQKGR 1156


>gi|124513860|ref|XP_001350286.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23615703|emb|CAD52695.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 906

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 20/160 (12%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
            K+KA++  I          ++  H    +  ++    + +           ++K    I
Sbjct: 644 AKVKAIKEYISYLIDADIKFLLFCHHKLVMDEVETFLKEQKCSYIRVDGLTPMEKREIYI 703

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + + N+  + +      +CG GLNL    N +VF  L+W   +  Q  +R       + G
Sbjct: 704 KNFQNDDNVKIALLSITACGMGLNLT-AANTVVFGELFWVPGQIIQAEDR-----AHRIG 757

Query: 161 FKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               V  ++YLIAQNTIDE+V + +  K       LN ++
Sbjct: 758 TAHDVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGIE 797


>gi|154283191|ref|XP_001542391.1| hypothetical protein HCAG_02562 [Ajellomyces capsulatus NAm1]
 gi|150410571|gb|EDN05959.1| hypothetical protein HCAG_02562 [Ajellomyces capsulatus NAm1]
          Length = 1128

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    N +     WW      Q I+R+      + G  + V V   I +++
Sbjct: 936  LRAGGVGLNLT-AANQVFMMDPWWSFATEAQAIDRV-----HRMGQLKDVTVTRFIVKDS 989

Query: 176  IDELVLQRLRTKSTIQDLL 194
            I+  +L+    K  I   L
Sbjct: 990  IEGRILRIQERKMMIAGSL 1008


>gi|291391484|ref|XP_002712469.1| PREDICTED: zinc finger, RAN-binding domain containing 3
           [Oryctolagus cuniculus]
          Length = 1062

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 282 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSS 341

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 342 ERIRLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 396

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K+ 
Sbjct: 397 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKER 442


>gi|239977350|sp|Q4QFY1|JBP2_LEIMA RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
          Length = 1098

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K++ L  I+   +A    +IV   +      + +     R            D+    
Sbjct: 892  SGKMRVLVDIVLRVQARKEKLIVFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 951

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 952  MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 1005

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 1006 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 1040


>gi|301608898|ref|XP_002934016.1| PREDICTED: zinc finger Ran-binding domain-containing protein
           3-like, partial [Xenopus (Silurana) tropicalis]
          Length = 489

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + +    +V  H  S L    +A  + +             
Sbjct: 343 KQTALAKAGAVKDYIKMMLENDKLKFLVFAHHLSMLQACTEAAIESKARYIRIDGSVPSS 402

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q  N+ +  +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 403 ERIHLVHQFQNDPETRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR---- 457

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G   +V ++YLIA+ T+D L+   L  K
Sbjct: 458 -AHRIGQCSSVHIHYLIARGTMDTLMWGMLNRK 489


>gi|118390229|ref|XP_001028105.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89309875|gb|EAS07863.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1895

 Score = 74.6 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 29/144 (20%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWNEG-KIPLL 112
            N   +++   F   L  +                      + K    I ++NE  +  ++
Sbjct: 1701 NKNKVLIFSRFKETLQLICDQLLNTEFSHIKYLKLDGNVQVSKRYAIINKFNEDSECKIM 1760

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +  G GLNL    N+++ F   ++     Q I+R       + G         +I 
Sbjct: 1761 LLTTSVGGLGLNLT-SANVVIMFDHNYNPMNDLQAIDR-----AHRIG---------MIT 1805

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            ++T++E ++   R K  I + ++N
Sbjct: 1806 KDTLEERIMGIQRFKINIANAIIN 1829


>gi|328862456|gb|EGG11557.1| hypothetical protein MELLADRAFT_91139 [Melampsora larici-populina
           98AG31]
          Length = 152

 Score = 74.6 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T  +     +  N  KI        + G GLN+    + +      W+ +  QQ I+R+
Sbjct: 19  KTQQRTWQLTRFQNNIKIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQQAIDRL 77

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 Q G    V VY+++A  ++++ +    + ++++   ++
Sbjct: 78  -----HQIGQTHPVKVYHVVAGESVEQHLFNVQKKEASLARKVI 116


>gi|315052578|ref|XP_003175663.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
 gi|311340978|gb|EFR00181.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
          Length = 1073

 Score = 74.6 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 21/154 (13%)

Query: 51   VHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKD 97
            +   K++A++  +    +++    I +   F   ++ L               G+   + 
Sbjct: 863  IPSAKLRAVKTFVSRWLKESPGTKITIFTQFIGMISALCTLCDVEGWGYTTLCGKIHHRT 922

Query: 98   PCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + I+ + E K   +L +   + G GLNL    N  +   LWW+    QQ   R+    
Sbjct: 923  RHSNIKRFREDKNTSILISSLKTGGVGLNLTM-ANKCILVDLWWNEAIEQQAFCRLF--- 978

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + G ++ V +  +  +NT+D+ +      K+ 
Sbjct: 979  --RIGQEKDVEIVRICVENTVDDRLQLIQSVKTK 1010


>gi|149915099|ref|ZP_01903627.1| helicase/SNF2 family domain protein [Roseobacter sp. AzwK-3b]
 gi|149810820|gb|EDM70659.1| helicase/SNF2 family domain protein [Roseobacter sp. AzwK-3b]
          Length = 871

 Score = 74.6 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 34/179 (18%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCT 100
           K   + K+  L  +IE   A   P++    + +  A + K   +         ++ D   
Sbjct: 432 KVESETKVTKLVDLIETRLAPEEPVLFFTEYKATQALVHKTLEEKFGKGCVGFINGDERL 491

Query: 101 I-------------------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +                   +++N G+         + G G++LQ     LV   L W+ 
Sbjct: 492 VVSGPNDQETILQYPRDKAAEDFNGGRTR-FLISTEAGGEGIDLQDRCATLVHVDLPWNP 550

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNALK 199
               Q + R+      + G KRAV VY +    T++  +   L  K   IQ  L  +++
Sbjct: 551 MRLHQRVGRLN-----RYGQKRAVQVYLMRNPETVEARIWALLEEKLGRIQAALSASME 604


>gi|224009872|ref|XP_002293894.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970566|gb|EED88903.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 718

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 69  APIIVAYHFNSDLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
             ++V  H    +  L +AF               +     +  N+    L      + G
Sbjct: 372 EKVVVFAHHRQLIMDLVEAFGDSCVHIIGGMDAKSRAEAVQRFQNDASCRLFIGSIRAAG 431

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    + +VF  L W      Q  +R       + G + +V V Y + + ++DE +
Sbjct: 432 VGLTLTASSH-VVFLELDWSPSIMTQAEDRC-----HRVGQQDSVLVEYFVFKGSLDEWM 485

Query: 181 LQRLRTKS 188
            ++L  KS
Sbjct: 486 ARQLAEKS 493


>gi|167539902|ref|XP_001741408.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894110|gb|EDR22194.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 956

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----LDK------DPCT 100
             K+K +   ++K       ++V  H    L  ++    +       +D           
Sbjct: 401 TAKLKGVCSFLDKMIIEGKKLLVFGHHQEMLDGIENYIKESNIEYIRIDGSTNASLRAKY 460

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  + + K I +      + G G+ L +  + +VF  L+W     +Q  +R+      + 
Sbjct: 461 VDRFQKEKRIRIAILSVTAAGTGITL-HSADTVVFAELYWTPGVLRQAEDRV-----HRI 514

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V ++YLI + T+D+L+   L  K  I    L+ 
Sbjct: 515 GQKNDVRIFYLIGKQTVDDLIWPLLEKKLKISGETLDG 552


>gi|311030891|ref|ZP_07708981.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 565

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 17/160 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           EK      + K + +  +I+K     +I+   + +    LQ    Q         G    
Sbjct: 352 EKIDLVGRNSKAEKVLELIQKVKDK-VIIFTEYRATQMYLQWFLKQNGITSVPFRGGFKR 410

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++E  +  + +L A   + G G+NLQ+  N ++ F L W+    +Q I RI    
Sbjct: 411 GKKDWMRELFKNHVQVLIA-TEAGGEGINLQF-CNHIINFDLPWNPMRLEQRIGRI---- 464

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G +R V +Y     NT++E +L+ L  K  + + ++
Sbjct: 465 -HRLGQERDVNIYNFATNNTVEEHILKLLYEKINLFERVI 503


>gi|224056086|ref|XP_002194081.1| PREDICTED: zinc finger, RAN-binding domain containing 3
           [Taeniopygia guttata]
          Length = 1026

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 20/171 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL-------- 94
           + +KE    K  A++  I+     +    +V  H  S L    +A  + +          
Sbjct: 314 RMYKETAIAKAGAVKDYIKMMLDNDKLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSV 373

Query: 95  ---DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++     Q   + +  +      + G GL      + +VF  L+WD    +Q  +R 
Sbjct: 374 PSAERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR- 431

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 + G   +V +++LIA+ T+D L+   L  K+ +    LN  K++ 
Sbjct: 432 ----AHRIGQCSSVNIHFLIAKGTMDTLMWAMLNRKAKVTGSTLNGKKEKM 478


>gi|157866423|ref|XP_001687603.1| j-binding protein [Leishmania major strain Friedlin]
 gi|68125217|emb|CAJ02566.1| putative j-binding protein [Leishmania major strain Friedlin]
          Length = 1022

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K++ L  I+   +A    +IV   +      + +     R            D+    
Sbjct: 816 SGKMRVLVDIVLRVQARKEKLIVFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 875

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 876 MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 929

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 930 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 964


>gi|167395605|ref|XP_001741658.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165893723|gb|EDR21860.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 837

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----DKDPCT------IQEWNE-GKIP 110
           + EK N   +++   +   L  +         L    D D         ++ +N      
Sbjct: 464 MCEKTNEK-VLLFSQYQRTLDSISDLLQSKDILFLRIDGDLDDGLRKERLRRFNHMSSWG 522

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L         GLN+  G + +V F   W        I    V R  + G K+ V  Y +
Sbjct: 523 VLLMTIRVGACGLNIT-GASRVVIFDEGWS------TIGNQAVDRAYRIGQKKDVVTYRI 575

Query: 171 IAQNTIDELVLQRLRTK 187
           ++  T++E + +R   K
Sbjct: 576 VSCGTVEEKMYRRQVHK 592


>gi|156062442|ref|XP_001597143.1| hypothetical protein SS1G_01337 [Sclerotinia sclerotiorum 1980]
 gi|154696673|gb|EDN96411.1| hypothetical protein SS1G_01337 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1130

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 72   IVAYHFNSDLARLQ-----KAFPQGR-----TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            +V   + S L  +Q        P  R     T       ++ +  +  I ++    ++ G
Sbjct: 976  VVFSGWTSHLDLIQFALQENNIPYTRLDGKMTRIARSNAMENFREDPTIVVILVSISAGG 1035

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL     + V     ++     Q I+R+      + G +R V     I  N+ +E +
Sbjct: 1036 LGLNLTTANKVYVM-EPQFNPAAEAQAIDRV-----HRLGQRREVQTVRFIMNNSFEEKM 1089

Query: 181  LQRLRTKSTIQDLLLNALKKE 201
            L+    K  +  L +++ K  
Sbjct: 1090 LKIQDKKQKLASLSMDSQKGR 1110


>gi|154315820|ref|XP_001557232.1| hypothetical protein BC1G_04482 [Botryotinia fuckeliana B05.10]
 gi|150846878|gb|EDN22071.1| hypothetical protein BC1G_04482 [Botryotinia fuckeliana B05.10]
          Length = 1660

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 91  GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             TL+K    I  +N    ++        + G G+NL    + ++     ++  +  Q +
Sbjct: 745 VSTLEKQKR-IDAFNAPNSELFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQDIQAL 802

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R       + G K+ V V+ L+ +++ +E ++Q  R K  +   L+ ++
Sbjct: 803 SR-----AHRIGQKKKVLVFQLVTKDSAEEQIVQVGRKKMALDQALIESI 847


>gi|322787016|gb|EFZ13240.1| hypothetical protein SINV_08607 [Solenopsis invicta]
          Length = 1002

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 18/171 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH------FNSDLARLQKA----FPQGRT 93
           ++        + +  ++ I++K N   IIV+          S L+ ++ A    F     
Sbjct: 824 DDDRISSKMRKLLDTVKEILQKGNDKLIIVSQWAMLLEVIASHLSSIKGATYSKFTGSVA 883

Query: 94  LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +      I+ +N       +L     + G       GGN L+ F + W+ +   Q  +RI
Sbjct: 884 IKDRQNVIESFNRPNSGPRILLLSL-TAGGVGLNLVGGNYLLLFDIHWNPQLESQAQDRI 942

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 + G K+ V+VY  +  NTI+E +      K  I   +L   K   
Sbjct: 943 -----YRFGQKKNVYVYKFVCVNTIEERIKALQERKLEIAKNVLTGDKAAV 988


>gi|239977351|sp|A4HVU6|JBP2_LEIIN RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
          Length = 1098

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 892  SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 951

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 952  MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 1005

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 1006 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 1040


>gi|268535648|ref|XP_002632959.1| C. briggsae CBR-RAD-26 protein [Caenorhabditis briggsae]
          Length = 1382

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 58   ALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------------- 97
            ALE++ E       I++     + L  L++   + + + K+                   
Sbjct: 891  ALEILDESTKIGEKILIFSQNLTALDMLEEILRKRQVVKKEKSEHQERWEKNRNYLRLDG 950

Query: 98   -------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      I  +N E  + L      +   G+NL    N  +     W+     Q + 
Sbjct: 951  TTSGADREKLINRFNSEPGLHLFLISTRAGSLGINL-VSANRCIIIDACWNPCHDAQAV- 1008

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 R  + G ++  FVY LI  N+++  +  R  +K  +Q  +++  + + 
Sbjct: 1009 ----CRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDA 1057


>gi|26340760|dbj|BAC34042.1| unnamed protein product [Mus musculus]
          Length = 904

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 6   KFQRELYCDLQGENIEAFNSA-SKTVKCLQLANG----AVYYDEEKHWKEVHDEKIKALE 60
           K ++ +  DL    ++  N++  +  K ++  N      V     + +K+    K  A++
Sbjct: 103 KVRQRIPFDLPPAAVKELNASFEEWQKLMRAPNSGAMETVMGLMTRMFKQTAIAKAGAVK 162

Query: 61  VIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNE 106
             I+   + ++   +V  H  S L    +A  + ++            ++     Q   +
Sbjct: 163 DYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKD 222

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GL      + +VF  L+WD    +Q  +R       + G   +V 
Sbjct: 223 PDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR-----AHRIGQCSSVN 276

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 277 IHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 311


>gi|146081173|ref|XP_001464187.1| j-binding protein [Leishmania infantum JPCM5]
 gi|134068278|emb|CAM66564.1| putative j-binding protein [Leishmania infantum JPCM5]
          Length = 1022

 Score = 74.2 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 816 SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 875

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 876 MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 929

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 930 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 964


>gi|330900255|gb|EGH31674.1| SNF2-related:helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 244

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 82  KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKLGVGCVTLVGSDSPKKRQKAIDA 141

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 142 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 195

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 196 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 229


>gi|308468126|ref|XP_003096307.1| CRE-RAD-26 protein [Caenorhabditis remanei]
 gi|308243350|gb|EFO87302.1| CRE-RAD-26 protein [Caenorhabditis remanei]
          Length = 1304

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 33/178 (18%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK------------- 96
           +  KI     I++++      I++     + L  L++   + +   K             
Sbjct: 807 NGYKIVVALEILDESTCIGEKILIFSQNLTALDMLEEILRKRQINGKNGPGERWEKNRNY 866

Query: 97  -----------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +N E  + L      +   G+NL    N  +     W+    
Sbjct: 867 LRLDGTTSGADREKLINRFNSEPGLHLFLISTRAGSLGINL-VSANRCIIIDACWNPCHD 925

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            Q +      R  + G ++  FVY LI  N+++  +  R  +K  +Q  +++  + + 
Sbjct: 926 AQAV-----CRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDA 978


>gi|322497591|emb|CBZ32664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1022

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 816 SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 875

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 876 MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 929

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 930 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 964


>gi|297745316|emb|CBI40396.3| unnamed protein product [Vitis vinifera]
          Length = 1981

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 82   ARLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             RL      G T L+     I ++N       +      + G GLNLQ   + +V +   
Sbjct: 1248 RRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQ-SADTVVIYDPD 1306

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + +  +Q + R       + G  R V V Y+ A + I   +    + K  + D ++NA 
Sbjct: 1307 PNPKNEEQAVAR-----AHRIGQTREVKVIYMEAVSLIRNNI---QQYKIDMADEVINAG 1358

Query: 199  K 199
            +
Sbjct: 1359 R 1359


>gi|224127712|ref|XP_002320143.1| hypothetical protein POPTRDRAFT_244585 [Populus trichocarpa]
 gi|222860916|gb|EEE98458.1| hypothetical protein POPTRDRAFT_244585 [Populus trichocarpa]
          Length = 434

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 31/195 (15%)

Query: 27  SKTVKCLQL---ANGAV-----YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
           +   +C++L    N  +     + D  K +      K+  L+ I+ K       +++   
Sbjct: 194 TLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVQSCGKLWILDRILIKLQRTGHRVLLFST 253

Query: 77  FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLN 124
               L          RL      G T L+     I ++N  +    +      + G GLN
Sbjct: 254 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 313

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   + ++ +    + +  +Q + R       + G  R V V Y+ A + I + +    
Sbjct: 314 LQ-SADTVIIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYMEAVSLIRKNI---Q 364

Query: 185 RTKSTIQDLLLNALK 199
           + K  + D ++NA +
Sbjct: 365 QYKIDMADEVINAGR 379


>gi|66357602|ref|XP_625979.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
 gi|46227244|gb|EAK88194.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
          Length = 908

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 45/222 (20%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K   +   +  C ++  N +  +S+S      +L                 + KI  ++
Sbjct: 693 IKMIKELLADPNCQVELSNFDEDDSSSSMCNLHKLTC---------------EIKINPVQ 737

Query: 61  VIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-------------------DKDP 98
             IE   + N    ++  H +  L  ++    + R                     +K  
Sbjct: 738 EYIEYLLEYNDEKYVIFGHHHVMLDAIESVLLKKRKTACNSGGPFLFIRIDGKTPGNKRE 797

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++E+ N     +      +CG GLNL   G  ++F  L+W      Q  +R       
Sbjct: 798 EYVKEFQNNENCKVALLSITACGQGLNLTSAG-TVIFAELYWVPGTMLQAEDRC-----H 851

Query: 158 QAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G + +   ++YLIA+ T+D+ +   L  K  I    L+ +
Sbjct: 852 RIGTQYSCINIHYLIAEETLDDKMWGTLCRKQKIMASTLDGI 893


>gi|297737996|emb|CBI27197.3| unnamed protein product [Vitis vinifera]
          Length = 1638

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+ K   +      SCG G+NL    + ++ +   ++     Q + R    
Sbjct: 572 DRQAAIARFNQDKTRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNPHADIQAMNR---- 626

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 627 -AHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 667


>gi|330966658|gb|EGH66918.1| SNF2-related:helicase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 652

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALARDLID 635


>gi|168205333|ref|ZP_02631338.1| putative helicase with SNF2 domain [Clostridium perfringens E str.
           JGS1987]
 gi|170663173|gb|EDT15856.1| putative helicase with SNF2 domain [Clostridium perfringens E str.
           JGS1987]
          Length = 1015

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTI 101
           +  EK+K+   + E        +++  ++     + +  F            + +    I
Sbjct: 841 LAKEKVKSTISLAENLLLENEKVVIFTNYTEPAEKFKNHFKNKAVLINGDVPIKERQKII 900

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++  G+  +   +  +   G+ L    NI++F    +    H Q  ERI      + G 
Sbjct: 901 EDFQNGESKVFIGNLKAASVGITLTK-ANIVIFNDFDYVPATHIQAEERI-----HRIGQ 954

Query: 162 KRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLN 196
            +   ++Y  A+N  IDE + + L  K  +   +++
Sbjct: 955 DKECNIFYNYAENIEIDEWIAEMLEKKFNMISKIVD 990


>gi|170070634|ref|XP_001869654.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167866544|gb|EDS29927.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 104

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     + G GLNL  G N L+   L W+ +   Q  +R+      + G K+ V+++  
Sbjct: 5   IMLLSLTAGGVGLNL-VGANHLMLLDLHWNPQLEAQAQDRV-----YRVGQKKPVYIWKF 58

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +  +T+++ ++   + K  +    L   K
Sbjct: 59  MCTDTVEQKIMGLQQKKLDLATQALTGTK 87


>gi|145607271|ref|XP_361651.2| hypothetical protein MGG_12155 [Magnaporthe oryzae 70-15]
 gi|145014859|gb|EDJ99427.1| hypothetical protein MGG_12155 [Magnaporthe oryzae 70-15]
          Length = 1430

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 26/159 (16%)

Query: 50   EVHDEKIKAL-EVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL----------- 94
                 K  A+   ++E  +  P   II+  H+   LAR+     +   +           
Sbjct: 1056 VTPSAKTTAIKMQVLEWLHKYPDDKIIIFTHWVP-LARILGRVFEAEKIRFLYYFGSMGM 1114

Query: 95   DKDPCTIQEWNEGKIPL----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +    ++++     PL    L A     G  LNL    N ++   LWW+       +ER
Sbjct: 1115 GQRKTAVEKFTTIIGPLAPKLLIASSRCGGQALNLT-AANRVILVDLWWNT-----AVER 1168

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                R  + G  +  +   ++ + TIDE +L     K  
Sbjct: 1169 QAFGRVHRIGQTKDTYYVKIVTRKTIDERLLDMQDEKDA 1207


>gi|322489605|emb|CBZ24862.1| putative j-binding protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1022

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 816 SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 875

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 876 MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 929

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++ V VY LI+  T ++ VL+    K  +   +L
Sbjct: 930 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIL 964


>gi|146087881|ref|XP_001465933.1| helicase  [Leishmania infantum JPCM5]
 gi|134070034|emb|CAM68366.1| putative helicase-like protein [Leishmania infantum JPCM5]
          Length = 1273

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN- 67
            EL                K +  ++L   A+  DE+     +  + +  LE +I K N 
Sbjct: 780 EELCVPPSLNYTPLLEDGVKLLVAIKLVAAAMARDEKVLLFSLSTQLLTFLESMIAKVNI 839

Query: 68  --AAPIIVAYHFNSDL--ARLQKAFPQGRT-LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
               P+             R++     G     +    +++++    P L      + G 
Sbjct: 840 EWRRPVAALQRQQHPQLPRRIRYCRLDGSHSAAQRAAMLEDFDRPDGPELFLLSTKAGGV 899

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+ +      ++     ++  + QQ I R       + G  R V+VY L    T++  + 
Sbjct: 900 GITVT-AATRVILVDTSFNPADDQQAIGR-----AYRYGQTRPVYVYRLTCYPTLEYSIF 953

Query: 182 QRLRTKSTIQDLLLN--ALKKETI 203
            +   K  +   ++   ++K++ +
Sbjct: 954 VQKLAKEWLFKTVIEESSVKRDGL 977


>gi|126011014|ref|YP_001039764.1| hypothetical protein BcepF1.080 [Burkholderia ambifaria phage
           BcepF1]
 gi|119712590|gb|ABL96811.1| unknown [Burkholderia ambifaria phage BcepF1]
          Length = 525

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 72/182 (39%), Gaps = 17/182 (9%)

Query: 31  KCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKANAAPII----------VAYHFNS 79
           K  Q+ +G +  + E       ++ ++K     +E  +   I+          VA    S
Sbjct: 349 KMKQVVSGFINVEGEPVLIDPENNPRMKLFSEYMEGVDGQTIVWCLYEVEILQVAEKLRS 408

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              R+   + + +  +     I ++  G I  +  H A+ G GL L       +++S   
Sbjct: 409 MGRRVATYYGKTKKGETREKIIDDFQNGLIDDIVGHAAALGIGLTLT-AATTSLYYSCDR 467

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + E   Q        R  + G  ++      IA++TIDE  ++    K+ + +++++   
Sbjct: 468 NNELRLQ-----SEDRNHRIGTVKSPVYVDFIAEDTIDEDDMRGRAFKTELANIVIDRTA 522

Query: 200 KE 201
           ++
Sbjct: 523 RK 524


>gi|154286186|ref|XP_001543888.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150407529|gb|EDN03070.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 219

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + +   +I+E+  + +I +L     + G GL+L    N  +F  LWW+    QQ   R+
Sbjct: 2   PIRQREKSIEEFSKDPEIRILVCSLRTAGTGLDLT-AANKCIFVDLWWNEAIEQQAFFRL 60

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 +   KR V    ++ +N+ID+ +      KS   D +L
Sbjct: 61  F-----RINQKRKVEFVRVVVRNSIDDRLQLLQEDKSNNIDGVL 99


>gi|68076919|ref|XP_680379.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56501303|emb|CAH95084.1| DNA helicase, putative [Plasmodium berghei]
          Length = 835

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
            K+KA++  I          ++  H    +  + +   + +           +DK    I
Sbjct: 577 AKVKAIKEYITYLIDADIKFLLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYI 636

Query: 102 QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +    KI +      +CG GLNL    N +VF  L+W   +  Q  +R       + G
Sbjct: 637 KNFQSDEKIRIALLSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDR-----AHRIG 690

Query: 161 FKR-AVFVYYLIAQNTIDELVLQRLRTK 187
                + ++YL+AQNTIDE+V + +  K
Sbjct: 691 TTHDTINIHYLVAQNTIDEVVWKIINRK 718


>gi|209489463|gb|ACI49222.1| hypothetical protein Csp3_JD05.007 [Caenorhabditis sp. PS1010]
          Length = 1195

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 95  DKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            K       +N+       L+     +   G N+    N +V F   W+     Q + R+
Sbjct: 854 GKRDAVQTHFNDADNHRARLMLISTRAGSLGTNM-VSANRVVIFDACWNPSHDTQSLFRV 912

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V++Y  IAQ T++E + +R  TK +    +++
Sbjct: 913 -----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD 952


>gi|25028310|ref|NP_738364.1| hypothetical protein CE1754 [Corynebacterium efficiens YS-314]
 gi|259507368|ref|ZP_05750268.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           efficiens YS-314]
 gi|23493595|dbj|BAC18564.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165079|gb|EEW49633.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           efficiens YS-314]
          Length = 886

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
              K+K +  ++++A  +    ++   F   L  L +     R + +   ++      ++
Sbjct: 703 TSAKMKRIIELLDEAEEHGRKTLIFTFFLDILDEL-EHVLGARVIGRIDGSVPAARRQEL 761

Query: 110 ----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                       L +   + G GLN+Q    +++           QQ + R+      + 
Sbjct: 762 VDALADAPAGSALISQITAGGVGLNIQSASQVII-CEPQVKPTIEQQAVARV-----HRM 815

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           G    V V+ LI  +T DE +L+ L  K+ I D
Sbjct: 816 GQTATVNVHRLIGDDTADERMLEILAGKTQIFD 848


>gi|328871601|gb|EGG19971.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1331

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R+  + P      ++    +  N+ K  +      + G GL L    +++VF  L+W   
Sbjct: 870 RIDGSTPPAV---REANVTRFQNQPKCQVALLSITAAGTGLTLT-ASSLVVFAELYWTPG 925

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Q  +R+      + G K  V ++YLI + T+D+ +   +  K  +    L+ 
Sbjct: 926 VLRQAEDRV-----HRIGQKNEVNIHYLIGKGTLDDRIWPMICNKLEVIGETLDG 975


>gi|328848317|gb|EGF97545.1| hypothetical protein MELLADRAFT_85092 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +  PQ RTL       +  N   I        + G GLN+    + +      W+ +  Q
Sbjct: 85  EMTPQERTL----QLNRFQNNNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDADWNPQIVQ 139

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           Q I+R+      + G    V VY+++A  ++++ +
Sbjct: 140 QAIDRL-----HRIGQTHPVKVYHVVAGGSVEQHL 169


>gi|322792699|gb|EFZ16567.1| hypothetical protein SINV_11659 [Solenopsis invicta]
          Length = 81

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++F+   W+    QQ ++R       + G  + V VY LI + TI+E +LQR R KS +
Sbjct: 20  VIFYDSDWNPTVDQQAMDR-----AHRLGQTKQVTVYRLICKGTIEERILQRAREKSEV 73


>gi|17367114|sp|Q9U7E0|ATRX_CAEEL RecName: Full=Transcriptional regulator ATRX homolog; AltName:
            Full=ATP-dependent helicase xnp-1; AltName: Full=X-linked
            nuclear protein 1
 gi|5901659|gb|AAD55361.1|AF134186_1 XNP-1 [Caenorhabditis elegans]
          Length = 1359

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 95   DKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K       +N+    +  L+     +   G N+    N ++ F   W+     Q + R+
Sbjct: 1026 GKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNM-VAANRVIIFDACWNPSHDTQSLFRV 1084

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1085 -----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD 1124


>gi|288927483|ref|ZP_06421330.1| helicase, Snf2 family [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330317|gb|EFC68901.1| helicase, Snf2 family [Prevotella sp. oral taxon 317 str. F0108]
          Length = 859

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 76/188 (40%), Gaps = 24/188 (12%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSD 80
           N   K +  +++   + Y  ++K      D K+  +  I+    ++    ++V   +   
Sbjct: 423 NKLMKYLSQMRMLCDSTYILDQKTR---FDTKVTEVINIVRNVIESGDEKLVVFSQWERM 479

Query: 81  LARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGG 129
              + K   +          G    +    +  + +E    +      +   GLNLQ   
Sbjct: 480 TRLVAKELEKEGIGFEYLHGGIPSIRRKDLVNNFMDEPHCRVFL-STDAGSTGLNLQ-AA 537

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +++V   L W+    +Q I R+      + G KR + V  L++  T +E +L +L+ KS+
Sbjct: 538 SVVVNVDLPWNPAVLEQRIARV-----YRLGQKRNIQVINLVSAGTFEEDMLDKLKFKSS 592

Query: 190 IQDLLLNA 197
           + + +L+ 
Sbjct: 593 LFEGVLDG 600


>gi|71980419|ref|NP_001020958.1| human XNP gene related family member (xnp-1) [Caenorhabditis elegans]
 gi|3253105|gb|AAC24256.1| Human xnp gene related protein 1, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1359

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 95   DKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K       +N+    +  L+     +   G N+    N ++ F   W+     Q + R+
Sbjct: 1026 GKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNM-VAANRVIIFDACWNPSHDTQSLFRV 1084

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + G  + V++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1085 -----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD 1124


>gi|299756092|ref|XP_001829083.2| SHREC complex subunit Mit1 [Coprinopsis cinerea okayama7#130]
 gi|298411519|gb|EAU92718.2| SHREC complex subunit Mit1 [Coprinopsis cinerea okayama7#130]
          Length = 1782

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHG 122
            A    +++                 G T   +    + E+N+   +  +      + G G
Sbjct: 1185 ARGHRVLLFSQ-------------DGSTKGTERQKCMDEFNKPNSEYFIFLLTTRAGGVG 1231

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL +  + ++ F   ++  +  Q I R       + G K    V+ L+ +++ +E ++Q
Sbjct: 1232 INL-FTADTVIIFDPDFNPHQDLQAIAR-----AYRYGQKNTCLVFKLMVKDSAEERIMQ 1285

Query: 183  RLRTKSTIQDLLLNAL 198
              + K  +  L++  +
Sbjct: 1286 IGKKKLVLDHLIVQKM 1301


>gi|302392306|ref|YP_003828126.1| helicase domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204383|gb|ADL13061.1| helicase domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 500

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 65/152 (42%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           ++K++ +E ++++ +   + +   + +    +     Q         G   D      + 
Sbjct: 313 NQKVQVVEELLKEIDGQAV-IFTEYLATQNYICYYLYQRGLMPVKFDGTLNDTQKERAKR 371

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   +  +     A+   G+NLQ+  N+++ + L W+  + +Q I R+      + G   
Sbjct: 372 FFAEQGDV-LVSTAAGRQGINLQF-CNVIINYDLPWNPMKLEQRIGRV-----HRLGQTE 424

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  + TI+E ++  L  K  + + ++
Sbjct: 425 EVKIYNLCTKGTIEEKIVNVLHDKINLFESVV 456


>gi|317035065|ref|XP_003188905.1| hypothetical protein ANI_1_1382124 [Aspergillus niger CBS 513.88]
          Length = 282

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 27/169 (15%)

Query: 43  DEEKHWK-----EVHDEKIKALEVIIEK--ANAAP--IIVAYHFNSDLARLQ-----KAF 88
           DE+  W       +   K+  +  I+ +  A  +P  I++   F   +  L      + +
Sbjct: 62  DEDTDWIKACARHMPSAKLTKIREILTEWLAQDSPGKIVIFTQFLDFVQILATMCQAENW 121

Query: 89  PQGRTLDKDPCTIQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           P      K    ++E N       + +  ++ A   + G GL+L    N  +   LWW+ 
Sbjct: 122 PYVLLTGKLSLAVRENNMTLFSDKDSEKRIMIASLKAGGTGLDL-SAANKCILVDLWWNE 180

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +Q   R+      + G +  V    LI +N+ID+ +L     K+ I
Sbjct: 181 AIQEQAFCRLF-----RIGQESEVEFVKLIIENSIDDYLLNLQTHKTAI 224


>gi|156396819|ref|XP_001637590.1| predicted protein [Nematostella vectensis]
 gi|156224703|gb|EDO45527.1| predicted protein [Nematostella vectensis]
          Length = 1438

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 18/153 (11%)

Query: 48   WKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
             K  H  K++A    L  I  + N+A  +V   +   L  + KA  +     +       
Sbjct: 1250 VKGSHSTKVEAVVRALLGIRAEDNSAKCLVFSTWQDVLDVIAKALAENDVYFRHITTSRK 1309

Query: 98   -PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             P  +  +  +  I +L     S  +GLN+    ++L       +     Q + R+    
Sbjct: 1310 LPEDLHAFKVDPDISVLLLPLQSGSNGLNIIEATHVL-LVEPALNPAHELQALGRV---- 1364

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + G  +   VY  I Q T++  +   L+ K+
Sbjct: 1365 -HRIGQTKPTHVYRFIIQGTVESRMYTLLKGKA 1396


>gi|148228350|ref|NP_001084942.1| transcription termination factor, RNA polymerase II [Xenopus laevis]
 gi|47122916|gb|AAH70581.1| MGC81081 protein [Xenopus laevis]
          Length = 1187

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQ 102
               +  L+ I   + A   ++   + S L  +               G    K     ++
Sbjct: 1018 SSLVSELKTIRSSSEAQKSVIVSQWTSMLKIVAVHLKLIGLSCATIDGSVNPKQRMDMVE 1077

Query: 103  EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N       ++     + G GLNL  G + L    + W+     Q  +RI      + G
Sbjct: 1078 DFNNNPKGPQVMLVSLCAGGVGLNLVGGNH-LFLMDMHWNPALEDQACDRI-----YRVG 1131

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++ V ++  +   T++E + Q    K  +   +L+ 
Sbjct: 1132 QQKDVVIHRFVCLGTVEEKISQLQEKKKDLAKKVLSG 1168


>gi|170585466|ref|XP_001897504.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158595051|gb|EDP33626.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1327

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 46/189 (24%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA----------------------- 87
              K+  L  II+K+      ++V       ++ +++                        
Sbjct: 911  SNKLMLLVEIIKKSEEIGDKLLVFSQSIESISLIKRMLQYMDENGVWFTDGHEAMKAANE 970

Query: 88   ---FPQGR---TLDKDPCTIQE------WNEGKI---PLLFAHPASCGHGLNLQYGGNIL 132
               + +GR    +D    T +       +N+       L+     +   G N+    N +
Sbjct: 971  TWGWKEGRDYMVIDGQVQTSKRHEIQTKFNDPNNLRSRLMLISTRAGSLGTNM-VAANRV 1029

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V F   W+     Q + R+      + G  + V++Y  IAQ T++E + +R  TK +   
Sbjct: 1030 VIFDACWNPSHDTQSLFRV-----YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSM 1084

Query: 193  LLLNALKKE 201
             +++  + E
Sbjct: 1085 RVVDEAQIE 1093


>gi|293352708|ref|XP_002728046.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Rattus
           norvegicus]
          Length = 1069

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +             
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELFWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|168041184|ref|XP_001773072.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162675619|gb|EDQ62112.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2529

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 30/174 (17%)

Query: 26   ASKTVKCLQL--ANGAVYYD------EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAY 75
            A    KC++L       Y +       +         K+  L+ I+ K +     +++  
Sbjct: 1494 APLQNKCMELRKVCNHPYLNYPPRYHSQGDMIVRTCGKLWILDRILVKLHKTGHRVLLFS 1553

Query: 76   HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGL 123
                 L  L+          +      TL+     I E+N       +      + G GL
Sbjct: 1554 TMTRLLDILEDYLQWRRLVYRRIDGMTTLEARESAIVEFNRPNSDCFIFLLSIRAAGRGL 1613

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNT 175
            NLQ   + ++ +    + +  +Q + R       + G KR V V Y+  + +NT
Sbjct: 1614 NLQT-ADTVIVYDPDPNPKNEEQAVAR-----AHRIGQKREVRVLYMEAVVENT 1661


>gi|124359580|gb|ABN05984.1| HMG-I and HMG-Y, DNA-binding; Bromodomain; Helicase, C-terminal
           [Medicago truncatula]
          Length = 1069

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 28/168 (16%)

Query: 27  SKTVKCLQL--------ANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
           +   +C++L         N   + D  K +      K+  L+ I+ K       +++   
Sbjct: 131 TLNNRCMELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFST 190

Query: 77  FNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLN 124
               L  L+          +       L+     I ++N       +      + G GLN
Sbjct: 191 MTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLN 250

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           LQ   + +V +    + +  +Q + R       + G KR V V Y+ A
Sbjct: 251 LQ-SADTVVIYDPDPNPKNEEQAVAR-----AHRIGQKREVKVIYMEA 292


>gi|312075594|ref|XP_003140486.1| hypothetical protein LOAG_04901 [Loa loa]
 gi|307764349|gb|EFO23583.1| hypothetical protein LOAG_04901 [Loa loa]
          Length = 698

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 32/196 (16%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDE-----KIKALEVIIEKAN--AAPIIVAYHFNS 79
           + T K L         D  K  +++ ++     K+K L   ++ A       ++   + S
Sbjct: 470 ALTEKLLD-------DDGNKQIEQLFEKNFLSMKLKKLFEHMDYALSCGDKCVIVSQWTS 522

Query: 80  DLARLQKAF---------PQGRTLDKDPCTIQE-WNEGKI--PLLFAHPASCGHGLNLQY 127
            L  L+              G+    D  +    +N+      ++     + G       
Sbjct: 523 LLNILEHHLRRKEILYTSINGKVSSSDRQSRANSFNKIDSGPRVMLLSL-TAGGVGLNLV 581

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           GGN L    L W+    QQ  +RI      + G  + VF++ L+   TI+E VL   R K
Sbjct: 582 GGNHLFLVDLHWNPALEQQACDRI-----YRIGQTKNVFIHKLVCLETIEERVLALQRIK 636

Query: 188 STIQDLLLNALKKETI 203
            T+   +L  +  + +
Sbjct: 637 QTLAKDVLEGVASKKL 652


>gi|157870139|ref|XP_001683620.1| helicase-like protein  [Leishmania major strain Friedlin]
 gi|68126686|emb|CAJ04698.1| putative helicase-like protein [Leishmania major strain Friedlin]
          Length = 1274

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 77/204 (37%), Gaps = 15/204 (7%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN- 67
            EL                K +  ++L   A+  DE+     +  + +  LE +I K N 
Sbjct: 781 EELCVPPSLNYTPLLEDGVKLLVAIKLVAAAMARDEKVLLFSLSTQLLTFLEHMIAKVNI 840

Query: 68  --AAPII-VAYHFNSDLAR-LQKAFPQGRT-LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
               P+  +    +  L+R ++     G     +    +++++    P L      + G 
Sbjct: 841 EWRRPVAALQRQRHPQLSRPIRYCRLDGSHSAAQRAAMLEDFDRPDGPALFLLSTKAGGV 900

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+ +      ++     ++  + QQ I R       + G  R V+VY L+   T++  + 
Sbjct: 901 GITVT-AATRVILVDTSFNPADDQQAIGR-----AYRYGQTRPVYVYRLMCYPTLEYSIF 954

Query: 182 QRLRTKSTIQDLLLN--ALKKETI 203
            +   K  +   ++   ++K++ +
Sbjct: 955 VQKLAKEWLFKTVIEESSVKRDGL 978


>gi|221106342|ref|XP_002157301.1| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency complementation group 6, partial
           [Hydra magnipapillata]
          Length = 1132

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 18/138 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEG-KIPLL 112
           KA     ++       L  +QK   +   L                 + ++ E  +  +L
Sbjct: 386 KAENHRTVIFSQSIKMLDIIQKVLSELGHLILRVDGRMKNPQDRENVLDKFKEDLRYNVL 445

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                    G+ L    N LV F   W+     Q ++R+      + G ++ V VY L+ 
Sbjct: 446 LMTTQIGSVGITLTC-ANRLVIFDPSWNPGTDAQAVDRV-----YRIGQEKDVVVYRLVT 499

Query: 173 QNTIDELVLQRLRTKSTI 190
             +++E + ++   K+ I
Sbjct: 500 CGSVEEKIYRKQIFKNAI 517


>gi|242023012|ref|XP_002431930.1| helicase, putative [Pediculus humanus corporis]
 gi|212517281|gb|EEB19192.1| helicase, putative [Pediculus humanus corporis]
          Length = 882

 Score = 73.8 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             KIK +  ++E+A      II+   +   L +L+      +T          +   P  
Sbjct: 707 STKIKTVVKLVEEALEADDKIIIVSQWAGLLQKLKTHILSLKTGVVTLDGSVPVKFRPKI 766

Query: 101 IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I ++N  K  I ++     + G       GGN LV     W+ +   Q  +RI      +
Sbjct: 767 IDDFNNPKTGIKVMLLSL-TAGGVGLNLVGGNRLVIIEPHWNPQLESQACDRI-----YR 820

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V+VY +I Q TI+E +    + K  + + +L  
Sbjct: 821 VGQKKPVYVYKIICQETIEERIELLQKKKLEVAETVLKG 859


>gi|220931728|ref|YP_002508636.1| helicase domain protein [Halothermothrix orenii H 168]
 gi|219993038|gb|ACL69641.1| helicase domain protein [Halothermothrix orenii H 168]
          Length = 467

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----DKDPCTIQEWNE 106
            + KIK +E I++  +    I+   + +    +     +              + +EW +
Sbjct: 270 TNAKIKEVEKILKGIDGQ-AIIFTEYRATQEFIAHYLEKRGYKTILFNGALSSSGKEWIK 328

Query: 107 G---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               +   +     +   GLNLQ+  N+++ + L W+  + +Q I R+      + G  +
Sbjct: 329 YIFQQKKDVLISTEAGSQGLNLQF-CNVIINYDLPWNPMKIEQRIGRV-----HRLGQTK 382

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  ++TI+E +L  L  K  +   ++
Sbjct: 383 DVLIYNLATKDTIEEKILNLLYNKINLFKEII 414


>gi|212530198|ref|XP_002145256.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210074654|gb|EEA28741.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1117

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGK-IP 110
            I++      +V   + S L  ++ A                TL      +  + E   I 
Sbjct: 956  IKEGPPIKSVVFSAWTSHLDLIEIALKDNGLDGFTRIDGTMTLAARKTALNNFAEDDSIT 1015

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   + G GLNL     + +     ++     Q ++R+      + G  R V     
Sbjct: 1016 ILLATIGAGGVGLNLTSASRVYIM-EPQYNPAAVAQAVDRV-----HRLGQTREVTTVQF 1069

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + +I+E + +  + K  + +  +   K +   V
Sbjct: 1070 IMKASIEEKIFEMAKKKQQLAEDSMARGKLDKREV 1104


>gi|261329633|emb|CBH12615.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
            DAL972]
          Length = 1077

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 53   DEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K+ AL  I+          ++   +      + +     +             +    
Sbjct: 869  SGKLTALISILHSIFEKMEKAVIFSQYIGSQDFIARTLTAYKISVVTIRGKDCQQRRRRV 928

Query: 101  IQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++ + + K  L L        +GL+L    +++++   WW+ +   Q I R       + 
Sbjct: 929  VEMFRDDKNVLCLVVSTQIGAYGLDLTAANHVILW-DTWWNPQVESQAIARC-----YRQ 982

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +AV  Y L A    D  VL+    K  +   L+N    + +
Sbjct: 983  NQSKAVIAYKL-ASGFEDATVLKAQARKRALFKCLINEETSQVV 1025


>gi|72391588|ref|XP_846088.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|74997988|sp|Q57X81|JBP2_TRYBB RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Short=TbJBP2;
            Includes: RecName: Full=Probable DNA helicase JBP2;
            Includes: RecName: Full=Thymine dioxygenase JBP2
 gi|62175656|gb|AAX69788.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
 gi|70802624|gb|AAZ12529.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1077

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 53   DEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K+ AL  I+          ++   +      + +     +             +    
Sbjct: 869  SGKLTALISILHSIFEKMEKAVIFSQYIGSQDFIARTLTAYKISVVTIRGKDCQQRRRRV 928

Query: 101  IQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++ + + K  L L        +GL+L    +++++   WW+ +   Q I R       + 
Sbjct: 929  VEMFRDDKNVLCLVVSTQIGAYGLDLTAANHVILW-DTWWNPQVESQAIARC-----YRQ 982

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +AV  Y L A    D  VL+    K  +   L+N    + +
Sbjct: 983  NQSKAVIAYKL-ASGFEDATVLKAQARKRALFKCLINEETSQVV 1025


>gi|226311883|ref|YP_002771777.1| hypothetical protein BBR47_22960 [Brevibacillus brevis NBRC 100599]
 gi|226094831|dbj|BAH43273.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 568

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 21/146 (14%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW------NEGKI 109
            +I++ N   +I+   + +    LQK                  + ++W      N  ++
Sbjct: 371 ELIQQINDK-VIIFTEYRATQNYLQKYLHDHGITSVPFRGGFKRSKKDWMTDLFQNRAQV 429

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G G+NLQ+  N ++ + + W+    +Q I R+      + G KR V +Y 
Sbjct: 430 ---LIATEAGGEGINLQF-CNQVINYDMPWNPMRVEQRIGRV-----HRLGQKRDVHIYN 480

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           L    TI+E +L+ L  K  + ++++
Sbjct: 481 LSTTGTIEEHILKLLYEKIDLFEMVI 506


>gi|293341309|ref|XP_002724934.1| PREDICTED: zinc finger, RAN-binding domain containing 3-like
           [Rattus norvegicus]
          Length = 1037

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +             
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELFWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|289650008|ref|ZP_06481351.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 650

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|162448815|ref|YP_001611182.1| helicase, putative [Sorangium cellulosum 'So ce 56']
 gi|161159397|emb|CAN90702.1| helicase, putative [Sorangium cellulosum 'So ce 56']
          Length = 420

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 18/139 (12%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTI 101
              K  AL  ++ +A+   ++V   F   L+ ++ A  +                    +
Sbjct: 207 ASRKGGALVDLV-RAHDEQVLVFTRFRDTLSTIEAALREAGVEPVAFHGGLSAADKRAAL 265

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             + +G+  +      + G G NL +  ++LV F L ++    +Q I R+      + G 
Sbjct: 266 SAFRDGRARV-LVSTDAGGEGHNLHH-CHVLVNFDLPYNPMLIEQRIGRL-----HRMGQ 318

Query: 162 KRAVFVYYLIAQNTIDELV 180
           +  V VY L A+ T +E V
Sbjct: 319 REEVRVYNLCARGTAEERV 337


>gi|84498682|ref|ZP_00997435.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381019|gb|EAP96906.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 721

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       I+ +  + +I ++     + G GLNLQ   N +V   L W   E  Q I+R
Sbjct: 582 QTPKVRKANIEAFLTDPEISVVVCSLTAAGVGLNLQVASN-VVLAELSWTSAEQTQAIDR 640

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G    V  + +IA  TID  + + +  K+ +    L+ 
Sbjct: 641 V-----HRIGQTEPVTAWRIIAAQTIDSRLAELIDDKAGLAARALDG 682


>gi|68064412|ref|XP_674191.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56492586|emb|CAI00653.1| DNA helicase, putative [Plasmodium berghei]
          Length = 467

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 47/236 (19%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANG---AVYYDEEKHWKEVHDEKIKA 58
            Y + + + +  +     +   +  +  ++  ++ N      Y  +   +      K + 
Sbjct: 145 LYKQIENKSFKQVNSDGTLNTKSFQNTIMQLRKVVNHPFLFTYNYDINDFIIKSSGKFEV 204

Query: 59  LEVIIEKA--NAAPIIVAYHFN------SDLARLQK----AFPQGRTLDKDPCTIQEWNE 106
           L+ +I K       I++           SD   L+           +L      I  +NE
Sbjct: 205 LDRMIPKLLKFKHKILLFCQMTKLMDILSDYFELRGYKYHRLDGSVSLSNRREIIDNFNE 264

Query: 107 -------------------------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                                     +  +      S   GLNLQ   + ++ F   ++ 
Sbjct: 265 SMFVNNSEEIFKNKDSDLLTQESKLDEPMIFILSTRSGSLGLNLQ-AADTVIIFDSDFNP 323

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q + R       + G K  V V+  I  ++++ELV Q+ + K  I D ++ A
Sbjct: 324 HQDIQAMCRC-----HRIGQKNIVKVFRFITISSVEELVFQKAKDKLNINDKVIQA 374


>gi|307203054|gb|EFN82245.1| Transcriptional regulator ATRX-like protein [Harpegnathos saltator]
          Length = 2019

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N ++ F   W+     Q I RI      + G K+  +VY  
Sbjct: 1738 LFLISTRAGGLGINLT-AANRVIIFDASWNPSHDVQSIFRI-----YRFGQKKPCYVYRF 1791

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A  T++E +  R  TK ++   +++
Sbjct: 1792 LAAKTMEEKIYNRQVTKLSLSCRVVD 1817


>gi|260666103|gb|ACX47901.1| Dbuz/Dlh [Drosophila buzzatii]
          Length = 517

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 51  VHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLD------------ 95
               KI     II +        IIV     + L  L K   +  T              
Sbjct: 343 TPSTKISRAIEIINEHVLLEKKKIIVVSQSVALLEILNKHLYKDSTRQLKIMTLTGRTPQ 402

Query: 96  -KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ-MIERIG 152
            K    I ++NE   P +L         GLNL  G   L+F  L W+     Q  I R+G
Sbjct: 403 HKIGELISDFNESVKPCILLISLKLAETGLNL-NGAKYLLFMDLHWNPHLEPQSAIHRLG 461

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                       V V+  + ++T+D+ + Q  +TK ++ 
Sbjct: 462 -------QQNENVIVFQFVCKDTVDDHIQQVQQTKLSLA 493


>gi|118372610|ref|XP_001019500.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89301267|gb|EAR99255.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 731

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT-IQE 103
           + +  LE +++  +   +IV       L  ++K             G   D++    +Q 
Sbjct: 425 QVLNYLEELLKSVD--KVIVFAEHIQILDNIEKFANDRKKKYIRIDGSVRDEEKSIRVQS 482

Query: 104 W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + N   I +      +   G+ L    NIL F  + W     +Q  +R       + G K
Sbjct: 483 FENNKNISIAILSFGAASLGITLTSASNIL-FAEMHWTPAIMEQAEDR-----AHRIGQK 536

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  +YLI + T+D ++ +++  K  I   +L+ 
Sbjct: 537 NPVTCHYLIGEGTLDNMLYKKILEKQQIVGAILDG 571


>gi|296128669|ref|YP_003635919.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020484|gb|ADG73720.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 737

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       +  +  + ++ ++     + G GLNLQ   N LV   L W   E  Q I+R
Sbjct: 585 QTPRARAKAVAAFTEDPEVQIVVCSLMAAGVGLNLQVASN-LVLAELSWTDAEQTQAIDR 643

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I      + G +  V  + +IA  TID  + + + +KS +    L+   ++
Sbjct: 644 I-----HRIGQEEPVTAWRVIAAQTIDARIAELIDSKSGLAARALDGASED 689


>gi|66519055|ref|XP_393754.2| PREDICTED: transcription termination factor 2 [Apis mellifera]
          Length = 954

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
           ++ ++ I+EK +   +I+   + S L  +              F     + +    +  +
Sbjct: 788 LEKVKEILEKND--KLIIVSQWTSTLNIIASCLSSIKDASFDMFTGSVPIKERQGIMDSF 845

Query: 105 N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N    K  +L     + G       GGN L+   + W+ +   Q  +RI      + G K
Sbjct: 846 NTSNNKPKILLLSL-TAGGVGLNLVGGNHLLLIDIHWNPQLEVQAQDRI-----YRFGQK 899

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + VF+Y  I ++TI+E +      K  I   +L+  K  T+
Sbjct: 900 KNVFIYKFICKDTIEERIKHLQERKMEIAQNVLSGDKNSTV 940


>gi|290988684|ref|XP_002677026.1| predicted protein [Naegleria gruberi]
 gi|284090631|gb|EFC44282.1| predicted protein [Naegleria gruberi]
          Length = 822

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
           E H K     ++K L+ ++ +        ++V        + + K   +  T+       
Sbjct: 595 ESHPKLTGSTRVKILKNLVSRIVGGKKEKVVVFSGLVCYNSVIVKELSKDNTIKIGVFTG 654

Query: 96  -----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                K    I ++N G I  L     + G G++L    N +V F+L ++  +  Q I R
Sbjct: 655 DTSSPKRAEIINQFNRGIINTLLISKNAGGVGIDLTTATN-VVLFNLDFNFAKDDQAICR 713

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +      +   K  V ++ L+ + ++D  V +    K+ I D LL+ +
Sbjct: 714 LV-----RKNQKEQVKIFRLVCRESVDVAVKELQAHKTVIFDKLLDDI 756


>gi|15230098|ref|NP_189077.1| chr40 (chromatin remodeling 40); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|11994696|dbj|BAB02934.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1132

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDP 98
            K K L   I  +      ++V   +   L  + +                  G+   +D 
Sbjct: 928  KTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDR 987

Query: 99   C-TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N+      +L A   +C  G++L  G + +V   + W+     Q I R     
Sbjct: 988  QHMIDNFNKPDSGSKVLLASTKACSEGISL-VGASRVVILDVVWNPSVESQAISR----- 1041

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G KRAVF+Y+L+ ++T +     +   K  I +L+ ++
Sbjct: 1042 AFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSS 1083


>gi|67465792|ref|XP_649054.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56465406|gb|EAL43665.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 837

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 19/137 (13%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----DKDPCT------IQEWNE-GKIP 110
           + EK N   +++   +   L  +         L    D D         ++ +N      
Sbjct: 464 MCEKTNEK-VLLFSQYQRTLDSIADLLQSKDILFLRIDGDLDDGLRKERLRRFNHMSSWG 522

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L         GLN+  G + +V F   W        I    V R  + G K+ V  Y +
Sbjct: 523 VLLMTIRVGACGLNIT-GASRVVIFDEGWS------TIGNQAVDRAYRIGQKKDVVSYRI 575

Query: 171 IAQNTIDELVLQRLRTK 187
           +   T++E + +R   K
Sbjct: 576 VTCGTLEEKMYRRQVHK 592


>gi|311272141|ref|XP_003133319.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
           domain-containing protein 3-like [Sus scrofa]
          Length = 1044

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 20/180 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR 92
           A  ++     + +K+    K  A+   I+   + ++   +V  H  S L    +A  + +
Sbjct: 293 ATESIMGLITRMFKQTAIAKAGAVRDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIESK 352

Query: 93  TL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           T            ++     Q   + +  +      + G GL      + +VF  L+WD 
Sbjct: 353 TRYVRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATH-VVFAELYWDP 411

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +Q  +R       + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 412 GHIKQAEDR-----AHRIGQCSSVNIHYLIANGTLDTLMWAMLNRKAQVTGSTLNGRKEK 466


>gi|322505021|emb|CAM42238.2| putative DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1096

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 30/219 (13%)

Query: 2   KQYHKFQRELYC---DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+    ++++      L   +  A NSA   V        A   +  +        KI A
Sbjct: 407 KEKKALEKQIIALRHSLSSTSTAAANSAFSLVDNSAGDCAARAPNVFEMKMATARAKIPA 466

Query: 59  LEV----IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD---------------KD 97
           ++     I+E+   +   +I+  H    +  L+ A    + L                ++
Sbjct: 467 VQDYVSGIVEQHLHSGEKLILFAHHQCMMEALRSAVEAVQPLKPIDYIYISGDTPPAQRE 526

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           P       E    +      S G G N     + +VF  L W+   H Q  +R+      
Sbjct: 527 PAAEHFRTEATCTVAILSMQSSGTGHNFTC-ASTVVFTELDWNPSTHLQCEDRV-----H 580

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  +   + YL+A+ T D ++   L+ K ++   +L 
Sbjct: 581 RIGQAQPCRIKYLLAEGTSDSVIWPLLQAKLSVTTAMLE 619


>gi|238602372|ref|XP_002395662.1| hypothetical protein MPER_04252 [Moniliophthora perniciosa FA553]
 gi|215466782|gb|EEB96592.1| hypothetical protein MPER_04252 [Moniliophthora perniciosa FA553]
          Length = 167

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
             +V   + + L +++ A                  D+   T    ++    +L     +
Sbjct: 15  KTVVFSQWTTMLDKVEDALEVAGIRYARLDGTMKRDDRTRATEALKHDPGREVLVVTLRA 74

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL     + V    +W+     Q + RI      + G  R V    LI Q  I++
Sbjct: 75  GGVGLNLNVDQRVYVM-DPYWNPAVENQAVARIL-----RLGQTRPVTTVKLITQGAIED 128

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L+  + K+ + +L L  
Sbjct: 129 RILEVQKMKTELANLTLGG 147


>gi|154338209|ref|XP_001565329.1| DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1096

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 30/219 (13%)

Query: 2   KQYHKFQRELYC---DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+    ++++      L   +  A NSA   V        A   +  +        KI A
Sbjct: 407 KEKKALEKQIIALRHSLSSTSTAAANSAFSLVDNSAGDCAARAPNVFEMKMATARAKIPA 466

Query: 59  LEV----IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD---------------KD 97
           ++     I+E+   +   +I+  H    +  L+ A    + L                ++
Sbjct: 467 VQDYVSGIVEQHLHSGEKLILFAHHQCMMEALRSAVEAVQPLKPIDYIYISGDTPPAQRE 526

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           P       E    +      S G G N     + +VF  L W+   H Q  +R+      
Sbjct: 527 PAAEHFRTEATCTVAILSMQSSGTGHNFTC-ASTVVFTELDWNPSTHLQCEDRV-----H 580

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  +   + YL+A+ T D ++   L+ K ++   +L 
Sbjct: 581 RIGQAQPCRIKYLLAEGTSDSVIWPLLQAKLSVTTAMLE 619


>gi|124430705|ref|NP_081954.1| zinc finger Ran-binding domain-containing protein 3 [Mus musculus]
 gi|81885066|sp|Q6NZP1|ZRAB3_MOUSE RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|42406402|gb|AAH66035.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
          Length = 1069

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 87/215 (40%), Gaps = 25/215 (11%)

Query: 6   KFQRELYCDLQGENIEAFNSA-SKTVKCLQLAN-GAVYYDEE---KHWKEVHDEKIKALE 60
           K ++ +  DL    ++  N++  +  K ++  N GA+        + +K+    K  A++
Sbjct: 268 KVRQRIPFDLPPAAVKELNASFEEWQKLMRAPNSGAMETVMGLITRMFKQTAIAKAGAVK 327

Query: 61  VIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNE 106
             I+   + ++   +V  H  S L    +A  + ++            ++     Q   +
Sbjct: 328 DYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKD 387

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GL      + +VF  L+WD    +Q  +R       + G   +V 
Sbjct: 388 PDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR-----AHRIGQCSSVN 441

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 442 IHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|148707810|gb|EDL39757.1| mCG13937, isoform CRA_a [Mus musculus]
          Length = 1073

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 320 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 379

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 380 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 434

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 435 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 480


>gi|311069060|ref|YP_003973983.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
 gi|310869577|gb|ADP33052.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
          Length = 556

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
            ++  +   + K   +  +I+K +   +I+   + +    LQ    Q         G   
Sbjct: 349 MDRINEVTQNSKAIQVVDLIKKIDDK-VIIFTEYRATQIYLQWFLQQNGISSVPFRGGFK 407

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +++   GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI   
Sbjct: 408 RGKKDWMKDLFRGKVQVLIA-TEAGGEGINLQF-CNNIINYDLPWNPMRLEQRIGRI--- 462

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G +R V +Y +  ++T++E +L+ L  K  + + ++
Sbjct: 463 --HRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVV 501


>gi|109730809|gb|AAI17923.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
 gi|109731403|gb|AAI17922.1| Zranb3 protein [Mus musculus]
          Length = 1069

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|25013144|gb|AAN71685.1| SD19050p [Drosophila melanogaster]
          Length = 1285

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 24/175 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
              K        KI ++  ++ K         IIV   + + L  + +A        ++ C
Sbjct: 1110 AHKSIIGDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKC 1169

Query: 100  TIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            T +++++ K PL     L    +    GLNL    + +       +  + +Q I RI   
Sbjct: 1170 TNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI--- 1225

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
               + G KR   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1226 --HRFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1278


>gi|229163175|ref|ZP_04291130.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           R309803]
 gi|228620238|gb|EEK77109.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           R309803]
          Length = 560

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ N   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKATKALELIQEINDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|242214471|ref|XP_002473058.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727888|gb|EED81795.1| predicted protein [Postia placenta Mad-698-R]
          Length = 67

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ F   W+ +   Q I R       + G  + V VY LI Q ++++
Sbjct: 1   GGLGINLTR-ASTVIMFDSDWNPQNDMQAIAR-----AHRIGQTKVVKVYRLICQGSVED 54

Query: 179 LVLQRLRTK 187
            +L R+R K
Sbjct: 55  QMLDRIRRK 63


>gi|170085497|ref|XP_001873972.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164651524|gb|EDR15764.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1754

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-T 100
              K++ L+ ++ K  A    +++   F   L  ++              G T   +    
Sbjct: 1179 SAKLRFLKALLPKLKARGHRVLLFSQFVIALNVIEDFLQGEGYKFLRLDGDTKGSERQKG 1238

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N       +      + G G+NL Y  + ++ F   ++     Q I R       +
Sbjct: 1239 MDEFNRPGSDYFVYLLTTRAGGVGINL-YTADTVIIFDPDFNP---HQAIAR-----AYR 1289

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K+   V+ L+ +++ +E ++Q  + K  +  L++  +
Sbjct: 1290 YGQKKTCLVFKLMVKDSAEERIMQIGKKKLVLDHLIVQKM 1329


>gi|75758379|ref|ZP_00738502.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904786|ref|ZP_04068840.1| Superfamily II DNA/RNA helicase, SNF2 [Bacillus thuringiensis IBL
           4222]
 gi|74494105|gb|EAO57198.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854800|gb|EEM99404.1| Superfamily II DNA/RNA helicase, SNF2 [Bacillus thuringiensis IBL
           4222]
          Length = 595

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 25  SASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSD 80
           ++S     LQ+  +G   +  E   + V   K+  L  I ++   A    I++   F   
Sbjct: 391 ASSDHPALLQMGQSGMSKHYLEHIPENVKSPKLTELVDICKERIEAGINKIVIFTQFAKM 450

Query: 81  LARLQKAFP---QGRTLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              + +      +   L+      +    ++ +        F    +  +GLN+Q+  N 
Sbjct: 451 QTLIDEELSTLGKVALLNGSMSSAQRQEQLETFKADPEYKFFVLTDAGNYGLNIQF-ANT 509

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTI 190
           L+ +   W+    +Q   R+      + G    V  +  L+   TIDE + + L  K  +
Sbjct: 510 LINYDSPWNPATFEQRAGRV-----HRIGSTHNVVDIISLVTMGTIDEKIQETLEEKRKL 564

Query: 191 QDLLLNALKKE 201
              ++   + E
Sbjct: 565 GVAVIERNQSE 575


>gi|312213815|emb|CBX93817.1| similar to DNA repair protein rad5 [Leptosphaeria maculans]
          Length = 1207

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 66/204 (32%), Gaps = 28/204 (13%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------KEVHDEKIKALE-VIIEKA 66
            D      +   S ++  K  Q    A   D  K W        +   K  A++  I+   
Sbjct: 956  DTPEAVAQGTRSKARRKKNSQQVC-AGQEDIAKDWLVAQGDDVLPSAKTIAIKAQIMNWT 1014

Query: 67   NAAP---IIVAYHF---NSDLARLQKAFP-------QGRTLDKDPCTIQEW-NEGKIPLL 112
               P   II+   F    S LAR+             G TL      I  +  +  I ++
Sbjct: 1015 RKNPQVKIIIYTQFLAMISILARICHNEKWKIEQYHGGMTLHARDKAIASFAEDPDIRIM 1074

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             A     G GLNL    + ++    WW+    QQ        R  + G      +  L  
Sbjct: 1075 LASLRCGGLGLNLTM-ASKVIMMDPWWNSASEQQA-----FCRVFRIGQLEETSMSRLCV 1128

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
             NT+D+ ++     K      ++ 
Sbjct: 1129 NNTVDKQLIAMQERKDAEIKSVME 1152


>gi|154334093|ref|XP_001562198.1| j-binding protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|239977156|sp|A4H7G5|JBP2_LEIBR RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
 gi|134060314|emb|CAM37473.1| putative j-binding protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1098

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 892  SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 951

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+     + +L        +GL      N +V F  WW+ +   Q I R       + 
Sbjct: 952  MHEFSENKDLTVLVLSTKIAAYGLEFT-AANHVVLFDSWWNPQADAQAIAR-----AYRR 1005

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              ++ V VY LI+  T ++ VL+    K  +   + +  K+ T  
Sbjct: 1006 NQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIFH--KRTTRQ 1047


>gi|148707811|gb|EDL39758.1| mCG13937, isoform CRA_b [Mus musculus]
          Length = 1097

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 344 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 403

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 404 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 458

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 459 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 504


>gi|330878665|gb|EGH12814.1| SNF2-related:helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 650

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|229174905|ref|ZP_04302425.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus MM3]
 gi|228608573|gb|EEK65875.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus MM3]
          Length = 560

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +I+   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VIIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|198429753|ref|XP_002130424.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
           actin-dependent regulator of chromatin, subfamily a,
           containing DEAD/H box 1 [Ciona intestinalis]
          Length = 747

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP--- 89
           L++ A+   + +    +   K+  L+ ++ K  +    +++   F   +  L+       
Sbjct: 561 LSSRALSTMKLQESSLIDSGKMAHLDEMLPKFKSQNKRVLLFSQFTMMMDILEVYLKLRG 620

Query: 90  ------QGRT-LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+T + +    I  +N+   + +      + G G+NL    +++V   +  + 
Sbjct: 621 HRFLRLDGQTPVQERLSYIDSFNKDDSVFIFLLSTKAGGLGINLT-SASVVVLHDIDCNP 679

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +Q  +R       + G  + V V  LI+ N+++E + +  ++K  ++  +
Sbjct: 680 YNDKQAEDRC-----HRLGQTKKVEVVKLISVNSVEEGMFKTAQSKLQLEKDM 727


>gi|229019449|ref|ZP_04176271.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1273]
 gi|229025691|ref|ZP_04182096.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1272]
 gi|228735630|gb|EEL86220.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1272]
 gi|228741861|gb|EEL92039.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1273]
          Length = 560

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +I+   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VIIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|212529714|ref|XP_002145014.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Penicillium marneffei ATCC 18224]
 gi|210074412|gb|EEA28499.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Penicillium marneffei ATCC 18224]
          Length = 900

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 20/155 (12%)

Query: 52  HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLD--KD 97
              K  ALE +++     N   +++   F+  L           +      G T    + 
Sbjct: 424 TSSKFIALERLLDHEVIQNNKKMLIFAGFDYALDCCQSLLHAMNISHLRLDGNTPYAMRK 483

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +   + K  +      + G  + L     ++VF    W+     Q   R       
Sbjct: 484 LNVHRFQKQDKHRVFVIAMRAGGEDITLT-SAEVIVFMDFDWNPSIMAQAEAR-----AH 537

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + G  +AV V  L  + T++  +L+RL  K  +  
Sbjct: 538 RIGQTKAVTVVKLCTRGTVESQMLERLNNKLYLAS 572


>gi|302063910|ref|ZP_07255451.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           K40]
          Length = 331

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 169 KVRIVADLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDA 228

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 229 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 282

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 283 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 316


>gi|291235012|ref|XP_002737441.1| PREDICTED: chromodomain helicase DNA binding protein 1-like
           [Saccoglossus kowalevskii]
          Length = 834

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 35/148 (23%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
              K+  L+ ++   N  A  +++       L  +Q                        
Sbjct: 251 ASAKLHLLDQLLSFLNSRAHKVLLFSQMTRMLDIIQDYLGYR------------------ 292

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                     G GLNL    + ++F    ++ +   Q   R       + G  + V +  
Sbjct: 293 ---------GGQGLNL-ASADTVIFVDSDFNPQNDLQAAAR-----AHRIGQTKPVKIIR 337

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           L+ ++T++E++L+R   K ++ + ++  
Sbjct: 338 LVGRDTVEEIILKRADEKLSLTNTVIEG 365


>gi|289549357|ref|YP_003474345.1| helicase [Thermocrinis albus DSM 14484]
 gi|289182974|gb|ADC90218.1| helicase domain protein [Thermocrinis albus DSM 14484]
          Length = 1107

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K  + +Q A   V  ++E    E+     K  E I +      I++       L  L K 
Sbjct: 443 KLGELIQKAEKIVKSEKEVKLSELKTAIEKGFEEIRKMGGNPKILIFTESRDTLEYLVKK 502

Query: 88  FPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          T+D+     + +   +  ++ A   + G G+NLQ+  +I++ + +
Sbjct: 503 ISGWGYTVNYIHGDMTIDERIKEEKRF-RDETQIMVA-TEAAGEGINLQF-CHIMINYDI 559

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            W+    +Q + RI      + G ++ V ++ L+A++TI+  VL +L  K
Sbjct: 560 PWNPNRLEQRMGRI-----HRYGQQKDVHIFNLVAEDTIEGQVLVKLFEK 604


>gi|194288961|ref|YP_002004868.1| hypothetical protein RALTA_A0827 [Cupriavidus taiwanensis LMG 19424]
 gi|193222796|emb|CAQ68799.1| conserved hypothetical protein, putative DNA-binding ATP-binding
            helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 1097

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 29/165 (17%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFN---SDLARLQKAF-------------PQGRTLDKD 97
            E++KAL    E++    +IV   F      L R+  AF                R     
Sbjct: 928  ERLKALA--AERSGNHKVIVFCEFRELQLLLQRVIAAFFGFAPDIVNGDTSADPRVAHSR 985

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  + +      +   P + G G+N+Q   N +V F+  W+  +  Q   R      
Sbjct: 986  QRLIDRFQDQPGFHAIILSPLAVGFGVNIQ-AANHVVHFTRTWNPAKEDQATAR-----A 1039

Query: 157  RQAGFKRAVFVYY---LIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R V VYY   + AQ  + D  +   L  K  +   +LN 
Sbjct: 1040 YRIGQTRTVTVYYPGVISAQFPSFDVRLDALLGRKRELAADMLNG 1084


>gi|66805677|ref|XP_636560.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60464943|gb|EAL63058.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 1332

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
           + H   +  + +K LE           I+  H      R+  +    +   K    I  +
Sbjct: 821 DGHRVLMFSQSVKMLEDF--------EILLDHLGLTYLRIDGSISSTK---KRQEIIDLY 869

Query: 105 NEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N                 GLNL     +L+     W+       I+   V R  + G K+
Sbjct: 870 NTDMSYFAFIMTIQVGALGLNLTSADRVLIL-DPSWN------TIDNQAVDRAYRIGQKK 922

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY L++  TI+E + ++   K ++   +LN
Sbjct: 923 DVVVYRLMSCGTIEEKIYRKQVFKGSLMKTMLN 955


>gi|66800837|ref|XP_629344.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462710|gb|EAL60912.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2205

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            D  RL  + P           I ++N+    I L      +   G NL  GG  ++   L
Sbjct: 1938 DYFRLDGSTPT----KTRQRLIDQFNDMANDIKLFLISTKAGSLGTNLT-GGTRVILMDL 1992

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+    +Q + R       + G K  V VY L+   T ++    ++  K T+    +++
Sbjct: 1993 SWNPVHDRQAVYRC-----YRMGQKNQVHVYTLVMAGTGEQKTYTQMIYKQTLSKRAVDS 2047


>gi|239977150|sp|B6EU02|JBP2_LEITA RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Short=LtJBP2;
            Includes: RecName: Full=Probable DNA helicase JBP2;
            Includes: RecName: Full=Thymine dioxygenase JBP2
 gi|209407460|emb|CAR82639.1| J-binding protein 2 [Leishmania tarentolae]
          Length = 1098

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
              K++ L  I+   +A    +I+   +      + +     R            D+    
Sbjct: 892  SGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRA 951

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +QE+     + +L        +GL+     N +V F  WW+ +   Q I R       + 
Sbjct: 952  MQEFSENKDLIVLVLSTKIAAYGLDFT-AANHVVLFDSWWNPQVDAQAIAR-----AYRR 1005

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++ V VY LI+  T ++ VL     K  +   +L
Sbjct: 1006 NQRKPVTVYRLISA-TENKFVLSSQTRKIALFKCIL 1040


>gi|4056415|gb|AAC97989.1| Similar to the end of DNA repair protein gb|X74615 (rad8) gene
           [Arabidopsis thaliana]
          Length = 95

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G  LNL    ++ +    WW+       +ER    R  + G  + + V   I +NT
Sbjct: 1   LKAGGVALNLTVASHVFMM-DPWWN-----PAVERQAQDRIHRIGQYKPIRVVRFIIENT 54

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           ++E +L+  + K  + +  +  
Sbjct: 55  VEERILRLQKKKELVFEGTVGG 76


>gi|322487766|emb|CBZ23007.1| putative DNA excision/repair protein SNF2 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 927

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++    ++ +N +  + +        G GL      + +V     W+     Q ++R+  
Sbjct: 533 ERRCAEVERFNKDAGVWVCLLTTQVGGVGLTF-NAASAVVLLDPSWNPSADAQAVDRV-- 589

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G +R V V+ L+   T++E V +    K       L ++K
Sbjct: 590 ---HRIGQRRDVVVFRLVTCGTVEEKVYRNQIFKRMAA---LQSMK 629


>gi|183233301|ref|XP_654593.2| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801642|gb|EAL49206.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 956

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK-DPCT 100
             K+K +   ++K       ++V  H    L  ++    +         G T        
Sbjct: 401 TAKLKGVCSFLDKMIIEGKKLLVFGHHQEMLDGIETYIKENNIEYIRIDGSTNASLRAKY 460

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  + + K I +      + G G+ L +  + +VF  L+W     +Q  +R+      + 
Sbjct: 461 VDRFQKEKRIRIAILSVTAAGTGITL-HSADTVVFAELYWTPGVLRQAEDRV-----HRI 514

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V ++YLI + T+D+L+   L  K  I    L+ 
Sbjct: 515 GQKNDVRIFYLIGKQTVDDLIWPLLEKKLKISGETLDG 552


>gi|157878809|ref|XP_001687416.1| DNA excision/repair protein SNF2 [Leishmania major strain Friedlin]
 gi|321438075|emb|CBZ11827.1| putative DNA excision/repair protein SNF2 [Leishmania major strain
           Friedlin]
          Length = 925

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 58  ALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
           AL++++   +     +V       L  L     + R            ++    +  +N 
Sbjct: 485 ALQLLLHCVSEQRKTLVFSRSRRILRLLSFLLQEWRLTHTQVDGDTPSERRCAEVDRFNN 544

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +        G GL      + +V     W+     Q ++R+      + G +R V
Sbjct: 545 DAGVWVCLLTTQVGGVGLTF-NAASAVVLLDPSWNPSADAQAVDRV-----HRIGQRRDV 598

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V+ L+  +T++E V +    K       L ++K
Sbjct: 599 VVFRLVTCDTVEEKVYRNQIFKRMAA---LQSMK 629


>gi|322496039|emb|CBZ31111.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 776

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 20/145 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK-IPLLFA 114
           +     +V       L  L     + R            ++    ++ +N    + +   
Sbjct: 347 SEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAEVERFNNDAGVWVCLL 406

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL      + +V   + W+     Q I+R+      + G +R V V+ L+   
Sbjct: 407 TTQVGGVGLTF-NAASAVVLLDISWNPSADAQAIDRV-----HRIGQRRDVVVFRLVTCG 460

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T++E V +    K       L ++K
Sbjct: 461 TVEEKVYRNQIFKRMAA---LQSMK 482


>gi|321398837|emb|CAM65175.2| putative DNA excision/repair protein SNF2 [Leishmania infantum
           JPCM5]
          Length = 776

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 20/145 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK-IPLLFA 114
           +     +V       L  L     + R            ++    ++ +N    + +   
Sbjct: 347 SEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAEVERFNNDAGVWVCLL 406

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL      + +V   + W+     Q I+R+      + G +R V V+ L+   
Sbjct: 407 TTQVGGVGLTF-NAASAVVLLDISWNPSADAQAIDRV-----HRIGQRRDVVVFRLVTCG 460

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T++E V +    K       L ++K
Sbjct: 461 TVEEKVYRNQIFKRMAA---LQSMK 482


>gi|229013447|ref|ZP_04170584.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides DSM
           2048]
 gi|229061920|ref|ZP_04199248.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH603]
 gi|229135050|ref|ZP_04263855.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST196]
 gi|229168972|ref|ZP_04296689.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH621]
 gi|228614564|gb|EEK71672.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH621]
 gi|228648435|gb|EEL04465.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST196]
 gi|228717363|gb|EEL69033.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH603]
 gi|228747859|gb|EEL97725.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides DSM
           2048]
          Length = 560

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +I+   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEVDDK-VIIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|163854526|ref|YP_001628824.1| helicase, putative [Bordetella petrii DSM 12804]
 gi|163258254|emb|CAP40553.1| helicase, putative [Bordetella petrii]
          Length = 1246

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 29/166 (17%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------------GRTLDK 96
            D  ++ L++I  +     +I+   F +    L+    +                    D 
Sbjct: 916  DWLLEQLKLI--QKKDEKVIIFCEFRNIQRLLRHYIEEQFNIFPPIINGDTSATAGHADS 973

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I+++ E      +   P + G G+N+Q   N ++ ++  W+  +  Q  +R     
Sbjct: 974  RQRQIKKFQEAAGFGAIILSPVAVGFGVNIQ-AANHVIHYTRTWNPAKEDQATDR----- 1027

Query: 156  QRQAGFKRAVFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ V+VYY + +     T D  + Q L  K  +   +LN 
Sbjct: 1028 AYRIGQKKDVYVYYPVVKADDFATFDVKLDQLLTRKRELAGDMLNG 1073


>gi|108756908|ref|YP_635362.1| SNF2 domain/helicase domain-containing protein [Myxococcus xanthus
           DK 1622]
 gi|108460788|gb|ABF85973.1| SNF2 domain/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 994

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHP 116
           A++ ++ +      ++A  F      +    P  R        I  ++  K   +L   P
Sbjct: 841 AMQDLLAQ------LIAERFRLGRVDIVNGEPDSR--KAALQNIDAFSRAKGFQVLILSP 892

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY--LIAQN 174
            + G GLN+    N ++ +  WW+  +  Q  +R       + G  R V VYY  L  Q 
Sbjct: 893 LAAGAGLNI-VAANHVIHYGRWWNPAKEDQATDR-----AHRIGQVRPVHVYYPLLHRQG 946

Query: 175 TIDE----LVLQRLRTKSTIQDLLLNALKKETIH 204
             D      +   +  K  I    L+    +T  
Sbjct: 947 RPDMGFDLRLHDLVERKRAIARDFLSPTNDDTQQ 980


>gi|242087829|ref|XP_002439747.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
 gi|241945032|gb|EES18177.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
          Length = 1535

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTLDK-DPCTIQEWNE 106
            + E      +++   +   L  +++   +              G+ L +    +I+ +N 
Sbjct: 1326 LCEAL-REKVLIFSQYIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNN 1384

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L A   +C  G++L  G + +V   + W+       + R  ++R  + G K+ 
Sbjct: 1385 PNNESRVLLASTRACCEGISLT-GASRVVLLDVVWN-----PAVGRQAISRAFRIGQKKF 1438

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1439 VYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1470


>gi|229031878|ref|ZP_04187866.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1271]
 gi|228729496|gb|EEL80485.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1271]
          Length = 560

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|212539075|ref|XP_002149693.1| alpha-1,6-mannosyltransferase subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210069435|gb|EEA23526.1| alpha-1,6-mannosyltransferase subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1874

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGKIPLLFAHP 116
               +V   +   L  ++    Q +             +    I ++  +  + +L    
Sbjct: 841 DVKSVVFSTWRMSLDVVESGLKQAQIPCLRFDGKVPQKERKSVIDKFKHDPSVSVLLLTL 900

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           +    GL L    +        W+    +Q + RI      + G K+ V       ++T 
Sbjct: 901 SCGAVGLTLTE-ASCAYLMEPHWNPTVEEQALARI-----HRLGQKKEVTTVRFYIKDTF 954

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E V++  R+K  +   L ++
Sbjct: 955 EERVMELQRSKDELAGTLFSS 975


>gi|218905364|ref|YP_002453198.1| putative helicase [Bacillus cereus AH820]
 gi|229123746|ref|ZP_04252941.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           95/8201]
 gi|218536349|gb|ACK88747.1| putative helicase [Bacillus cereus AH820]
 gi|228659881|gb|EEL15526.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           95/8201]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|217961719|ref|YP_002340289.1| putative helicase [Bacillus cereus AH187]
 gi|229140962|ref|ZP_04269506.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST26]
 gi|217067475|gb|ACJ81725.1| putative helicase [Bacillus cereus AH187]
 gi|228642538|gb|EEK98825.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST26]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|118479411|ref|YP_896562.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|118418636|gb|ABK87055.1| helicase, SNF2 family [Bacillus thuringiensis str. Al Hakam]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|117646930|emb|CAL37580.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 316 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  +KE I 
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNG-RKEKIQ 478


>gi|62860046|ref|NP_115519.2| zinc finger Ran-binding domain-containing protein 3 [Homo sapiens]
 gi|74741477|sp|Q5FWF4|ZRAB3_HUMAN RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|66840172|gb|AAH89429.2| Zinc finger, RAN-binding domain containing 3 [Homo sapiens]
          Length = 1079

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 316 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  +KE I 
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNG-RKEKIQ 478


>gi|30264301|ref|NP_846678.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47529745|ref|YP_021094.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187129|ref|YP_030381.1| helicase [Bacillus anthracis str. Sterne]
 gi|49480946|ref|YP_038291.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141268|ref|YP_085562.1| SNF2 family helicase [Bacillus cereus E33L]
 gi|165873273|ref|ZP_02217882.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167634666|ref|ZP_02392986.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167638582|ref|ZP_02396858.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170687388|ref|ZP_02878605.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170709332|ref|ZP_02899748.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177655894|ref|ZP_02937086.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190566152|ref|ZP_03019071.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|196041595|ref|ZP_03108887.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196046379|ref|ZP_03113605.1| putative helicase [Bacillus cereus 03BB108]
 gi|225866210|ref|YP_002751588.1| putative helicase [Bacillus cereus 03BB102]
 gi|227817002|ref|YP_002817011.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|228929272|ref|ZP_04092299.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947944|ref|ZP_04110231.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093287|ref|ZP_04224403.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-42]
 gi|229186470|ref|ZP_04313633.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus BGSC
           6E1]
 gi|229601677|ref|YP_002868519.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254683989|ref|ZP_05147849.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254721823|ref|ZP_05183612.1| putative helicase [Bacillus anthracis str. A1055]
 gi|254736337|ref|ZP_05194043.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741375|ref|ZP_05199062.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254753990|ref|ZP_05206025.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254757861|ref|ZP_05209888.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|301055721|ref|YP_003793932.1| putative helicase [Bacillus anthracis CI]
 gi|30258946|gb|AAP28164.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47504893|gb|AAT33569.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181056|gb|AAT56432.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|49332502|gb|AAT63148.1| possible helicase, SNF2 family [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974737|gb|AAU16287.1| possible helicase, SNF2 family [Bacillus cereus E33L]
 gi|164710990|gb|EDR16558.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167513430|gb|EDR88800.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167530118|gb|EDR92853.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170125758|gb|EDS94669.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170668583|gb|EDT19329.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172079927|gb|EDT65032.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190563071|gb|EDV17037.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|196022849|gb|EDX61530.1| putative helicase [Bacillus cereus 03BB108]
 gi|196027583|gb|EDX66198.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|225789095|gb|ACO29312.1| putative helicase [Bacillus cereus 03BB102]
 gi|227007674|gb|ACP17417.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|228596984|gb|EEK54641.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus BGSC
           6E1]
 gi|228690092|gb|EEL43888.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-42]
 gi|228811931|gb|EEM58265.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830562|gb|EEM76172.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229266085|gb|ACQ47722.1| putative helicase [Bacillus anthracis str. A0248]
 gi|300377890|gb|ADK06794.1| possible helicase, SNF2 family [Bacillus cereus biovar anthracis
           str. CI]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|323454846|gb|EGB10715.1| hypothetical protein AURANDRAFT_62160 [Aureococcus anophagefferens]
          Length = 734

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GL L  G + L+ F   W+  +  Q   R+      + G  R  F+Y L   +++
Sbjct: 582 KAGGVGLTLT-GASRLILFEPSWNPADDDQAAARVW-----RDGQTRPTFIYTLATAHSL 635

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           +E VL+R   K  +   + +A +
Sbjct: 636 EEHVLKRQAAKRNLAGRVRHAQR 658


>gi|310796546|gb|EFQ32007.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1262

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 26/173 (15%)

Query: 47   HWKEVHDEKIKALEVII----EKANAAPIIVAYHF---------NSDLARLQKAFPQGR- 92
            +       K+ AL+  +     +A    II+   F           +   +  A+  G+ 
Sbjct: 1032 NVPLTPSAKMTALKETVLRWQAEAPEDKIIIFSQFAVVMKIIGRVLESEGICFAYLSGKQ 1091

Query: 93   -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             T  ++    +  N  ++ +L     + G  LNL+ G N ++   LWW+    QQ   R+
Sbjct: 1092 NTEQRNKAVSEFQNGEEVKVLIVSLRAGGQCLNLERG-NRVILMELWWNHAVEQQAFARV 1150

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-----STIQDLLLNALK 199
                  + G  +       + +  I+  +L+    K     + +QD  + A K
Sbjct: 1151 F-----RIGQSKETHFLRFVVKTPIENRMLEMQVGKILAIDNALQDETVRAPK 1198


>gi|297471769|ref|XP_002685457.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Bos
           taurus]
 gi|296490526|gb|DAA32639.1| zinc finger, RAN-binding domain containing 3 [Bos taurus]
          Length = 1074

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 20/180 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGR 92
           A   V     + +K+    K  A++  I+   + ++   +V  H  S L    +A  + +
Sbjct: 303 ATETVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENK 362

Query: 93  TL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           T            ++     Q   + +  +      + G GL      + +VF  L+WD 
Sbjct: 363 TRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATH-VVFAELYWDP 421

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +Q  +R       + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 422 GHIKQAEDR-----AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEK 476


>gi|114581132|ref|XP_515805.2| PREDICTED: zinc finger, RAN-binding domain containing 3 [Pan
           troglodytes]
          Length = 977

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 508 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 567

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 568 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 622

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  +KE I 
Sbjct: 623 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNG-RKEKIQ 670


>gi|228916862|ref|ZP_04080425.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842785|gb|EEM87870.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MEKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|117646914|emb|CAL37572.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 316 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|297668526|ref|XP_002812483.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Pongo abelii]
          Length = 1024

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 261 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 320

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 321 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 375

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 376 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|242066540|ref|XP_002454559.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
 gi|241934390|gb|EES07535.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
          Length = 1484

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTL---------DKDPCTIQEWNE 106
            + E  N   ++V   +   L+ + +       + +G+ +               ++ +N+
Sbjct: 1201 LCEALNER-VLVFSQYLGPLSLIMEQLKAKFNWAEGKEILLMSGKVPVKNRQTMMEVFND 1259

Query: 107  --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  ++ A   +C  G+ L  G + +V   + W+       + R  + R  + G ++ 
Sbjct: 1260 MKSKAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIGRAYRIGQEKI 1313

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LIAQ T ++        K  +  LL +
Sbjct: 1314 VYTYNLIAQGTREKSKYDTQAKKEHMSKLLFS 1345


>gi|224000229|ref|XP_002289787.1| hypothetical protein THAPSDRAFT_268687 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974995|gb|EED93324.1| hypothetical protein THAPSDRAFT_268687 [Thalassiosira pseudonana
           CCMP1335]
          Length = 446

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----GRTL------DKDPCTI 101
            K+ A   + +        I++   F      +Q+        G  L       K    I
Sbjct: 268 AKMDATVALADSILKEEESIVIFSSFVDVAKGVQRCLQDRGWNGELLTGEVPSSKRQAMI 327

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++  G  P+      + G GL L      ++     W   +  Q  +R+     R+ G 
Sbjct: 328 DDFQSGVSPVFVCTYGAGGVGLTLT-AACTVILIDRPWTPGDVNQAEDRV-----RRIGQ 381

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R V   ++ A   IDE +   L  K       ++ +K
Sbjct: 382 TRPVRSIWIQAF-PIDEQIDALLDHKEVNSVTAVDGIK 418


>gi|196034943|ref|ZP_03102350.1| putative helicase [Bacillus cereus W]
 gi|195992482|gb|EDX56443.1| putative helicase [Bacillus cereus W]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|168008489|ref|XP_001756939.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162691810|gb|EDQ78170.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2486

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 28/169 (16%)

Query: 26   ASKTVKCLQL--ANGAVYYDEEKHWKEVHD------EKIKALEVIIEKAN--AAPIIVAY 75
            A    KC++L       Y +    +    D       K+  L+ I+ K +     +++  
Sbjct: 1448 APLQNKCMELRKVCNHPYLNYPPRYHIQGDMTVRTCGKLWILDRILVKLHKTGHRVLLFS 1507

Query: 76   HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGL 123
                 L  L+          +      TL+     I E+N       +      + G GL
Sbjct: 1508 TMTRLLDILEDYLQWRRLIYRRIDGMTTLEARESAIVEFNRPDSDCFIFLLSIRAAGRGL 1567

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            NLQ   + ++ +    + +  +Q + R       + G KR V V Y+ A
Sbjct: 1568 NLQT-ADTVIVYDPDPNPKNEEQAVAR-----AHRIGQKREVRVIYMEA 1610


>gi|149058725|gb|EDM09882.1| rCG46237 [Rattus norvegicus]
          Length = 716

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +             
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELFWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|228935549|ref|ZP_04098365.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228987419|ref|ZP_04147539.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157827|ref|ZP_04285902.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           4342]
 gi|228625784|gb|EEK82536.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           4342]
 gi|228772391|gb|EEM20837.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824087|gb|EEM69903.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MEKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|228954512|ref|ZP_04116537.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805169|gb|EEM51763.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|154305729|ref|XP_001553266.1| hypothetical protein BC1G_07679 [Botryotinia fuckeliana B05.10]
 gi|150853198|gb|EDN28390.1| hypothetical protein BC1G_07679 [Botryotinia fuckeliana B05.10]
          Length = 537

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 21/181 (11%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-KIKALEVII-----EKANAAPIIVAYH 76
           FN  S   +   + N  +          V    ++ A   +      E+    P      
Sbjct: 349 FNGLSLLNRLRLICNHGILQLTSTTDHVVSQGIEVVACCSMCGDYLQEEVFGGPFPSGIR 408

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +     R+    P    L +    +  + NE  + ++       G GL+L  G +     
Sbjct: 409 YT----RIDGTMP----LSRRNEALGAFKNEDTVRVILVSVTCGGAGLDLTTG-SRAYLL 459

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+    +Q      + R  +   KR V     +  N+ +E +++  + K  + D   
Sbjct: 460 EPHWNPMIEEQA-----LCRVHRISQKRKVTTIRYLMHNSFEEQIVELQKRKKMLADATF 514

Query: 196 N 196
           +
Sbjct: 515 S 515


>gi|30022310|ref|NP_833941.1| SNF2 family DNA/RNA helicase [Bacillus cereus ATCC 14579]
 gi|206971150|ref|ZP_03232101.1| putative helicase [Bacillus cereus AH1134]
 gi|218232045|ref|YP_002369033.1| putative helicase [Bacillus cereus B4264]
 gi|228910061|ref|ZP_04073881.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 200]
 gi|228922980|ref|ZP_04086273.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229071731|ref|ZP_04204946.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           F65185]
 gi|229081486|ref|ZP_04213985.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-2]
 gi|229129507|ref|ZP_04258478.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-Cer4]
 gi|229152428|ref|ZP_04280620.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1550]
 gi|229180505|ref|ZP_04307847.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           172560W]
 gi|29897867|gb|AAP11142.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus cereus ATCC
           14579]
 gi|206733922|gb|EDZ51093.1| putative helicase [Bacillus cereus AH1134]
 gi|218160002|gb|ACK59994.1| putative helicase [Bacillus cereus B4264]
 gi|228602929|gb|EEK60408.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           172560W]
 gi|228631036|gb|EEK87673.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1550]
 gi|228654112|gb|EEL09979.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-Cer4]
 gi|228701793|gb|EEL54280.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-2]
 gi|228711326|gb|EEL63286.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           F65185]
 gi|228836613|gb|EEM81961.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228849578|gb|EEM94412.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 200]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|47567784|ref|ZP_00238492.1| helicase/SNF2 family domain protein [Bacillus cereus G9241]
 gi|47555461|gb|EAL13804.1| helicase/SNF2 family domain protein [Bacillus cereus G9241]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 349 MEKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 407

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 408 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 462

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 463 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|189239152|ref|XP_971094.2| PREDICTED: similar to Transcriptional regulator ATRX homolog
            (ATP-dependent helicase XNP) (X-linked nuclear protein)
            (dXNP) (d-xnp) [Tribolium castaneum]
          Length = 1220

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 24/164 (14%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------------TL 94
              KIK +  II +   N   +++   +  +L  ++    Q R                  
Sbjct: 952  STKIKLILDIISECMRNNEKVLIFGQYLVELDIVEHFLKQFRNWRPNVDYYRMDGDTSVE 1011

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++D    +  +     +        G GLNL  G N ++      +     Q      + 
Sbjct: 1012 NRDILCKKFNSNPTSKVFLLTHKVGGLGLNLT-GANRVILIGSNHNPSHDSQ-----SLY 1065

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G +R  +VY L++  T++E +  R   K +I   +++ L
Sbjct: 1066 RVYRFGQERKCYVYRLVSLGTMEEKIYHRCVLKLSISGTVVDKL 1109


>gi|169146048|emb|CAQ14040.1| novel protein similar to vertebrate SWI/SNF-related,
           matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1
           (SMARCAD1, zgc:113183) [Danio rerio]
          Length = 972

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCT-----IQEWN-EGKIPLLF 113
           K     +++   F   L  ++           R     P       I ++N   +I +  
Sbjct: 814 KEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFL 873

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    N ++   +  +    +Q  +R       + G  R V V  LI++
Sbjct: 874 LSTRAGGQGINL-ASANTVILHDIDCNPFNDKQAEDRC-----HRMGQTRTVQVIKLISK 927

Query: 174 NTIDELVLQRLRTKSTI-QDLLLN 196
           ++I++ +L+  + K  + QD+  +
Sbjct: 928 DSIEDCMLRVGQEKLKLEQDMTTD 951


>gi|145477881|ref|XP_001424963.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392030|emb|CAK57565.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1215

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 19/149 (12%)

Query: 53   DEKIKAL--EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
              K++A+  E  + K     +++   +   +  L+  F              T+DK    
Sbjct: 1046 SSKLEAVIKETKVIKQKKEKVLIFTQWIEMIGLLENQFKDSGIIAYRITGSMTVDKREKI 1105

Query: 101  IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ + E   +  L     +   GLNL    N +     WW+     Q I R       + 
Sbjct: 1106 IKNFKEQQDVTALILSLRATSTGLNLTMASN-VFLVDPWWNPAIEDQAIGR-----ADRI 1159

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G +  V V   + +NTI++ +    + K 
Sbjct: 1160 GQQNQVKVVRFLCRNTIEQQINLLHQKKK 1188


>gi|322504140|emb|CAM36456.2| putative DNA excision/repair protein SNF2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 731

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 58  ALEVIIEK-ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DKDPCTIQEWN- 105
           AL++I+   +     +V       L          RL      G T  ++    +  +N 
Sbjct: 372 ALQLILRCVSERRKTLVFSRSKRLLHLLSFLLREWRLTHTQVDGGTPSERRCAEVDRFNS 431

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +        G GL      + +V     W+     Q ++R+      + G +R V
Sbjct: 432 NAGVWVCLLTTQVGGVGLTF-SAASAVVLLDPSWNPSADAQAVDRV-----HRIGQQRNV 485

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQ 191
            V+ L+   T++E V +    K    
Sbjct: 486 VVFRLVTCGTVEEKVYRNQIFKRMAA 511


>gi|312104297|ref|XP_003150368.1| hypothetical protein LOAG_14827 [Loa loa]
 gi|307754467|gb|EFO13701.1| hypothetical protein LOAG_14827 [Loa loa]
          Length = 156

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +D           + +      + G G+NL    +I+VF  L W+    +Q  +R   
Sbjct: 23  RSRDEQCRLFQENDDVMVAVLSITAAGIGVNLT-AASIVVFAELHWNPGTLKQAEDR--- 78

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 79  --AHRLGQKDSVFVQYLIAKGTADDVLWPLIQKKLDV 113


>gi|229192438|ref|ZP_04319401.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           10876]
 gi|228591015|gb|EEK48871.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           10876]
          Length = 545

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            +K      + K      +I++ +   +++   + +    LQ    Q             
Sbjct: 334 MDKINHIPFNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK 392

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI 
Sbjct: 393 RGKKDWMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI- 447

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 448 ----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 486


>gi|167860150|ref|NP_001018610.2| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Danio
           rerio]
          Length = 972

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCT-----IQEWN-EGKIPLLF 113
           K     +++   F   L  ++           R     P       I ++N   +I +  
Sbjct: 814 KEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFL 873

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    N ++   +  +    +Q  +R       + G  R V V  LI++
Sbjct: 874 LSTRAGGQGINL-ASANTVILHDIDCNPFNDKQAEDRC-----HRMGQTRTVQVIKLISK 927

Query: 174 NTIDELVLQRLRTKSTI-QDLLLN 196
           ++I++ +L+  + K  + QD+  +
Sbjct: 928 DSIEDCMLRVGQEKLKLEQDMTTD 951


>gi|154331301|ref|XP_001561469.1| DNA excision/repair protein SNF2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 731

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 58  ALEVIIEK-ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTL-DKDPCTIQEWN- 105
           AL++I+   +     +V       L          RL      G T  ++    +  +N 
Sbjct: 372 ALQLILRCVSERRKTLVFSRSKRLLHLLSFLLREWRLTHTQVDGGTPSERRCAEVDRFNS 431

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +        G GL      + +V     W+     Q ++R+      + G +R V
Sbjct: 432 NAGVWVCLLTTQVGGVGLTF-SAASAVVLLDPSWNPSADAQAVDRV-----HRIGQQRNV 485

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQ 191
            V+ L+   T++E V +    K    
Sbjct: 486 VVFRLVTCGTVEEKVYRNQIFKRMAA 511


>gi|119632034|gb|EAX11629.1| zinc finger, RAN-binding domain containing 3, isoform CRA_a [Homo
           sapiens]
          Length = 1030

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 261 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 320

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 321 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 375

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 376 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|119632036|gb|EAX11631.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
 gi|119632038|gb|EAX11633.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
          Length = 1019

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 256 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 315

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 316 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 370

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 371 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 417


>gi|109104419|ref|XP_001101449.1| PREDICTED: zinc finger Ran-binding domain-containing protein
           3-like, partial [Macaca mulatta]
          Length = 958

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 196 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGGVSSS 255

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 256 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 310

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 311 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 357


>gi|325094197|gb|EGC47507.1| DNA repair helicase rad5,16 [Ajellomyces capsulatus H88]
          Length = 1113

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAV-YYDEEKHW-----KEVHDEKIKA----LEVII 63
            L+G  +   NS  K+ K        V   +E+ +W       +   K+ A    L    
Sbjct: 735 QLEGNPVGMVNSHKKSRKKTDRKGSEVESSNEDMNWVACVGHLMPGAKLTAISSCLVNWF 794

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLL 112
           + +    +++   F      L     + R           + +   +I+E+  +  I +L
Sbjct: 795 KNSVETKVVIFTQFLGMAHVLGSMCQENRWGHLSLTGKMPIRQREKSIEEFSKDPAIRIL 854

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL+L    N  +   LWW+    QQ   R+      +   KR V    ++ 
Sbjct: 855 VCSLRTAGTGLDLT-AANKCILVDLWWNEAIEQQAFFRLF-----RINQKRKVEFVRVVV 908

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +N+ID+ +      KS   D +L
Sbjct: 909 RNSIDDRLQLIQEDKSNNIDRVL 931


>gi|119632040|gb|EAX11635.1| zinc finger, RAN-binding domain containing 3, isoform CRA_f [Homo
           sapiens]
          Length = 1017

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 256 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 315

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 316 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 370

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 371 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 417


>gi|3702343|gb|AAC62900.1| putative SNF2 subfamily transcriptional activator [Arabidopsis
           thaliana]
          Length = 1245

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 27  SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
           +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 325 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 384

Query: 77  FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
               L          RL      G T L+     I ++N+      +      + G GLN
Sbjct: 385 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 444

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   + +V +    + +  +Q + R       + G  R V V Y+       E V+++L
Sbjct: 445 LQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYM-------EAVVEKL 491

Query: 185 RT 186
            +
Sbjct: 492 SS 493


>gi|146074911|ref|XP_001462637.1| DNA excision/repair protein SNF2 [Leishmania infantum JPCM5]
          Length = 699

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 20/145 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK-IPLLFA 114
           +     +V       L  L     + R            ++    ++ +N    + +   
Sbjct: 347 SEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAEVERFNNDAGVWVCLL 406

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL      + +V   + W+     Q I+R+      + G +R V V+ L+   
Sbjct: 407 TTQVGGVGLTF-NAASAVVLLDISWNPSADAQAIDRV-----HRIGQRRDVVVFRLVTCG 460

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T++E V +    K       L ++K
Sbjct: 461 TVEEKVYRNQIFKRMAA---LQSMK 482


>gi|26351357|dbj|BAC39315.1| unnamed protein product [Mus musculus]
          Length = 616

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|312219363|emb|CBX99307.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1120

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 23/170 (13%)

Query: 48   WKEVHDEKIKALEVIIEKANAAP------IIVAYHFNSDLARLQ-----KAFPQGRTLDK 96
                    +  L+   E +   P       IV   + + L  ++           R   +
Sbjct: 939  PHTKTQALLNDLKEFHEWSENNPHERPIKSIVFSSWTTHLDLIEIALQAHNHTYVRLDGR 998

Query: 97   DPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                 ++        +  + ++     + G GLNL    N +      ++     Q ++R
Sbjct: 999  MSRDARDKSMQRLREDPSVRVMLVSIGAGGLGLNLTT-ANKVFMMEPQFNPAAEAQAVDR 1057

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +      + G  R V +   I   + +E +L   + K  + DL +   +K
Sbjct: 1058 V-----HRLGQDRDVTIKRFIMDKSFEEKMLVMQKKKKDLADLTMARERK 1102


>gi|302135049|ref|ZP_07261039.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 650

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
               + +   K++ +  ++ + +    +I+   +   +A L++   +             
Sbjct: 478 GGLRQLLERVKVRIVSDLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDS 537

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             K    I  +  +    +     ++ G G NL    N + F  L W      Q  +R  
Sbjct: 538 PKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-- 594

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                + G  R V V   +A +TID+ + Q L  K  +   L++
Sbjct: 595 ---AYRNGQLRMVVVKIPLADDTIDQQLWQMLMDKRALASDLID 635


>gi|229047922|ref|ZP_04193498.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH676]
 gi|228723379|gb|EEL74748.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH676]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|218899388|ref|YP_002447799.1| putative helicase [Bacillus cereus G9842]
 gi|218544732|gb|ACK97126.1| putative helicase [Bacillus cereus G9842]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|228941387|ref|ZP_04103939.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974320|ref|ZP_04134889.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980912|ref|ZP_04141216.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           Bt407]
 gi|228778848|gb|EEM27111.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           Bt407]
 gi|228785370|gb|EEM33380.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818313|gb|EEM64386.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942008|gb|AEA17904.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|228960494|ref|ZP_04122144.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228967268|ref|ZP_04128304.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|229111701|ref|ZP_04241249.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-15]
 gi|296504708|ref|YP_003666408.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis BMB171]
 gi|228671695|gb|EEL26991.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-15]
 gi|228792637|gb|EEM40203.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228799191|gb|EEM46158.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325760|gb|ADH08688.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis BMB171]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKELFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|229146796|ref|ZP_04275161.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST24]
 gi|228636624|gb|EEK93089.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST24]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKEIFQNRAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|193785976|dbj|BAG54763.1| unnamed protein product [Homo sapiens]
          Length = 827

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 64  KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 123

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 124 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 178

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 179 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 225


>gi|156031219|ref|XP_001584934.1| hypothetical protein SS1G_14031 [Sclerotinia sclerotiorum 1980]
 gi|154699433|gb|EDN99171.1| hypothetical protein SS1G_14031 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1393

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 51   VHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLD 95
            +   K  AL+ ++    E+A    +++   F   LAR+                   +L+
Sbjct: 1172 LPSAKTTALKALLLKGFEEAPDDKVVIYVQFR-TLARIIGRMCAAEGWGFLYLTGDASLE 1230

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 ++E+  +  I +L A     G GLN  +  N  +   LWW+    QQ   RI   
Sbjct: 1231 HRTKAVKEFRIQDNIQILIAGLKCGGLGLNFPF-ANRCISLDLWWNYGVEQQAFGRIF-- 1287

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G  +  ++  L+ +N++D  +L     K
Sbjct: 1288 ---RIGQNKETWMTRLVVRNSVDMRLLGMQDWK 1317


>gi|324328140|gb|ADY23400.1| helicase, putative [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW-- 104
            + K      +I++ +   +++   + +    LQ    Q                ++W  
Sbjct: 357 FNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMK 415

Query: 105 ----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      + G
Sbjct: 416 ELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 467 QKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|291615513|ref|YP_003522621.1| helicase domain protein [Nitrosococcus halophilus Nc4]
 gi|291582575|gb|ADE17031.1| helicase domain protein [Nitrosococcus halophilus Nc4]
          Length = 938

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 24/150 (16%)

Query: 52  HDEKIKA-----LEVIIEKANAAPIIVAYHFNSDLARLQKAFP------------QGRTL 94
            D K++A     LE ++ K     +++   + +    L++                G++ 
Sbjct: 510 DDRKLQAFQSGLLEQVLTKNPDEKVLIFTEYRATQDYLRETLVARFGADKVEIICGGQSQ 569

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    I  + +           + G G+NLQ   +++  F L W+     Q I R+   
Sbjct: 570 DERRAAIARFEDKGQ--FLVSTEAGGEGINLQRYCHVVFNFDLPWNPMRLVQRIGRL--- 624

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
              + G  + V V+ + A +T+D  ++  L
Sbjct: 625 --YRYGQDKRVIVFNVHAPDTLDAQIMDTL 652


>gi|229198355|ref|ZP_04325061.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1293]
 gi|228585055|gb|EEK43167.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1293]
          Length = 560

 Score = 72.7 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW-- 104
            + K      +I++ +   +++   + +    LQ    Q                ++W  
Sbjct: 357 FNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMK 415

Query: 105 ----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      + G
Sbjct: 416 ELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 467 QKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|42571243|ref|NP_973695.1| transcription regulatory protein SNF2, putative [Arabidopsis
            thaliana]
 gi|75122353|sp|Q6EVK6|BRM_ARATH RecName: Full=ATP-dependent helicase BRM; Short=AtBRM; AltName:
            Full=Protein BRAHMA
 gi|49658966|emb|CAG28313.1| putative SNF2 subfamily ATPase [Arabidopsis thaliana]
 gi|330255538|gb|AEC10632.1| ATP-dependent helicase BRM [Arabidopsis thaliana]
          Length = 2193

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1273 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 1332

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N+      +      + G GLN
Sbjct: 1333 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 1392

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            LQ   + +V +    + +  +Q + R       + G  R V V Y+       E V+++L
Sbjct: 1393 LQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYM-------EAVVEKL 1439

Query: 185  RT 186
             +
Sbjct: 1440 SS 1441


>gi|71422266|ref|XP_812080.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|122021396|sp|Q4DCH3|JBP2_TRYCR RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
 gi|70876818|gb|EAN90229.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 1086

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF---NSDLA 82
               +CL L N     +           K+  L  I+          I+   +      ++
Sbjct: 858  LIDECLSLVNSGFLTE-----FVGLSGKMTVLISILHSIREKKEKAIIFSQYVGSQDFIS 912

Query: 83   RLQKAFPQGRTL-------DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVF 134
            R   +F    +        ++   TI+++ E  KI  L        +GL+     +++++
Sbjct: 913  RTLTSFDIVSSTIRGRDCHERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTAANHVILW 972

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQD 192
               WW+ +   Q I R       +    RAV VY L +  ++TI   VL+    K  +  
Sbjct: 973  -DSWWNPQVESQAIAR-----AYRRNQTRAVIVYRLASEFEDTI---VLKTQIRKLALFR 1023

Query: 193  LLLN 196
             ++N
Sbjct: 1024 CIMN 1027


>gi|67587278|ref|XP_665245.1| DNA helicase [Cryptosporidium hominis TU502]
 gi|54655812|gb|EAL35016.1| DNA helicase [Cryptosporidium hominis]
          Length = 405

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 45/222 (20%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K   +   +  C ++  N +   S+S      +L                 + KI  ++
Sbjct: 190 IKMIKELLADPNCQVELSNFDEDESSSSMCNLHKLTC---------------EIKINPVQ 234

Query: 61  VIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-------------------DKDP 98
             IE   + N    ++  H +  L  ++    + R                     +K  
Sbjct: 235 EYIEYLLEYNDEKYVIFGHHHVMLDAIESVLLKKRKTACNSGGPFLFIRIDGKTPGNKRE 294

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++E+ N     +      +CG GLNL   G  ++F  L+W      Q  +R       
Sbjct: 295 EYVKEFQNNENCKVALLSITACGQGLNLTSAG-TVIFAELYWVPGTMLQAEDRC-----H 348

Query: 158 QAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G + +   ++YLIA+ T+D+ +   L  K  I    L+ +
Sbjct: 349 RIGTQYSCINIHYLIAEETLDDKMWGTLCRKQKIMASTLDGI 390


>gi|281207937|gb|EFA82116.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1139

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----ARLQKAFPQGRTL--- 94
             D     +E+   K+  ++  IE+ +   II+   FN  L      ++   PQ R L   
Sbjct: 867  IDSSHKNQEIQSSKLNYIKKRIEEIDGQ-IIIFSQFNEMLYDIIFMIKSDMPQLRFLQYH 925

Query: 95   ------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  ++    +         ++  +     +G+N+    +IL+      +L       
Sbjct: 926  TGISKKERADAILTFQTNQDYKVIVMNTDLAAYGINITKATHILI-VDPIMNL-----AK 979

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            ER  + R  + G  + V+V  L+  +++DE++
Sbjct: 980  ERQAIKRAHRIGQTKPVYVEKLVTTDSVDEVI 1011


>gi|238588607|ref|XP_002391776.1| hypothetical protein MPER_08746 [Moniliophthora perniciosa FA553]
 gi|215456905|gb|EEB92706.1| hypothetical protein MPER_08746 [Moniliophthora perniciosa FA553]
          Length = 219

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           Q      D   +  +   KI     H  + G GLNL  G N +V F   W+     Q ++
Sbjct: 37  QRVEKGPDEQGVDFY---KIKTPTGHAGAGGVGLNLT-GANRVVIFDPNWNPAHDLQAMD 92

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           R       + G  R V+VY L+    ++EL+  R   K 
Sbjct: 93  R-----AFRFGQWRDVYVYRLLGAGAMEELIYARQLLKQ 126


>gi|169620129|ref|XP_001803476.1| hypothetical protein SNOG_13266 [Phaeosphaeria nodorum SN15]
 gi|160703967|gb|EAT79150.2| hypothetical protein SNOG_13266 [Phaeosphaeria nodorum SN15]
          Length = 1106

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
            +V   + + L  ++ A    +             ++D        +  I ++     + G
Sbjct: 955  VVFSCWTTHLDLIELALKDHQHRYCRLDGRMSRQNRDESMRVFREDPTIIVMLVSIGAGG 1014

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    N +      ++     Q ++R+      + G  R V +   I  N+ +E +
Sbjct: 1015 LGLNLTT-ANKVFMMEPQFNPAAEAQAVDRV-----HRLGQDREVMIKRFIMDNSFEEKM 1068

Query: 181  LQRLRTKSTIQDLLL 195
            ++  + K  + DL L
Sbjct: 1069 VELQQKKKKLADLTL 1083


>gi|119480763|ref|XP_001260410.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
            NRRL 181]
 gi|119408564|gb|EAW18513.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
            NRRL 181]
          Length = 2130

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 13/175 (7%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT 93
            + + A    E     +    K+  L  I++   N    I+   F   +    KAF     
Sbjct: 1935 MISAASLGFEGDRSTQYGGRKMDRLVEIVKGIPNQERAILFIQFRELIDVASKAFDLANI 1994

Query: 94   LD-----KDPCTIQEWNEGKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-Q 146
                   +D   I+E+  G   ++  +  S    GLNLQ   N ++F S      ++   
Sbjct: 1995 THTVITARDTKKIEEFKRGNGKVVILNLGSETAAGLNLQC-TNHVIFLSPMLAETQYDYD 2053

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK----STIQDLLLNA 197
                  + R  + G  R V VY+L+ + TID  + Q  R K       Q +L+NA
Sbjct: 2054 SSMTQAIGRALRYGQTRRVHVYHLLMKRTIDINIFQERRRKILVERNGQAVLVNA 2108


>gi|42569958|ref|NP_182126.2| transcription regulatory protein SNF2, putative [Arabidopsis
            thaliana]
 gi|330255539|gb|AEC10633.1| ATP-dependent helicase BRM [Arabidopsis thaliana]
          Length = 2192

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1272 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 1331

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N+      +      + G GLN
Sbjct: 1332 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 1391

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            LQ   + +V +    + +  +Q + R       + G  R V V Y+       E V+++L
Sbjct: 1392 LQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYM-------EAVVEKL 1438

Query: 185  RT 186
             +
Sbjct: 1439 SS 1440


>gi|327396325|dbj|BAK13747.1| hypothetical protein PAJ_3668 [Pantoea ananatis AJ13355]
          Length = 1042

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 33/171 (19%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAY-----HFNSD--------LARLQKAFPQGRTLD 95
               ++ A   I+ +  A    ++V        F           L  +         + 
Sbjct: 823 DASARLNACFDILHRIKAKGERVLVFIEHRKMQFRFMELARQEFGLEHI-DHINGDTPIQ 881

Query: 96  KDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           K    ++ +      +G   LL   P + G GL L    + ++  S WW+    +Q  +R
Sbjct: 882 KRQAIVRRFQHHLEQDGGFDLLVLGPKAAGTGLTLTAATH-VIHLSRWWNPAVEEQCNDR 940

Query: 151 IGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
           +      + G +  V ++  +A      +++ D L+   +  K ++    L
Sbjct: 941 V-----HRIGQQHPVQIHMPMAIHAGYQEHSFDCLLQGLMSRKRSLARAAL 986


>gi|270010822|gb|EFA07270.1| hypothetical protein TcasGA2_TC013301 [Tribolium castaneum]
          Length = 1294

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 24/164 (14%)

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------------TL 94
              KIK +  II +   N   +++   +  +L  ++    Q R                  
Sbjct: 1026 STKIKLILDIISECMRNNEKVLIFGQYLVELDIVEHFLKQFRNWRPNVDYYRMDGDTSVE 1085

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++D    +  +     +        G GLNL  G N ++      +     Q      + 
Sbjct: 1086 NRDILCKKFNSNPTSKVFLLTHKVGGLGLNLT-GANRVILIGSNHNPSHDSQ-----SLY 1139

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G +R  +VY L++  T++E +  R   K +I   +++ L
Sbjct: 1140 RVYRFGQERKCYVYRLVSLGTMEEKIYHRCVLKLSISGTVVDKL 1183


>gi|42783352|ref|NP_980599.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|206978444|ref|ZP_03239310.1| putative helicase [Bacillus cereus H3081.97]
 gi|222097673|ref|YP_002531730.1| helicase, putative [Bacillus cereus Q1]
 gi|42739280|gb|AAS43207.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|206743342|gb|EDZ54783.1| putative helicase [Bacillus cereus H3081.97]
 gi|221241731|gb|ACM14441.1| helicase, putative [Bacillus cereus Q1]
          Length = 560

 Score = 72.3 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW-- 104
            + K      +I++ +   +++   + +    LQ    Q                ++W  
Sbjct: 357 FNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMK 415

Query: 105 ----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      + G
Sbjct: 416 ELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 467 QKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|296204912|ref|XP_002749531.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
           [Callithrix jacchus]
          Length = 1080

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 86/216 (39%), Gaps = 25/216 (11%)

Query: 6   KFQRELYCDLQGENIEAFNSA-SKTVKCLQLAN-GAVYYDEE---KHWKEVHDEKIKALE 60
           K ++ +  DL     +  N++  +  K +++ N GA+        + +K+    K  A++
Sbjct: 268 KIRQRIPFDLPSAAAKELNTSFEEWKKLMRMPNSGAMETVMGLITRMFKQTAIAKAGAVK 327

Query: 61  VIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNE 106
             I+   + ++   +V  H  S L    +A  + +             ++     Q   +
Sbjct: 328 DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKIRYIRIDGSVSSSERIHLVNQFQKD 387

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GL      + +VF  L+WD    +Q  +R       + G   +V 
Sbjct: 388 PDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR-----AHRIGQCSSVN 441

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 442 IHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|229543866|ref|ZP_04432925.1| SNF2-related protein [Bacillus coagulans 36D1]
 gi|229325005|gb|EEN90681.1| SNF2-related protein [Bacillus coagulans 36D1]
          Length = 567

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 21/200 (10%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            QRE     +   +   N   KT +   +    V    +K      + K +    +I+  
Sbjct: 312 LQREACSSREAVFVTLKNLLKKTEQPSPVLEETVAALIQKIEAVKTNSKAEKALELIQNI 371

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW------NEGKIPLLFAH 115
           +   +I+   + +    LQ    Q                ++W      N  ++      
Sbjct: 372 DDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMRQLFENHAQV---LIA 427

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ+  + ++ F L W+    +Q I R+      + G ++ V +Y    +NT
Sbjct: 428 TEAGGEGINLQF-CHHMINFDLPWNPMRLEQRIGRV-----HRLGQEKDVHIYNFATKNT 481

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E +L+ L  K  + + ++
Sbjct: 482 VEEHILKLLYEKIHLFERVI 501


>gi|30044094|ref|NP_835691.1| similar to DNA helicase [Rhodothermus phage RM378]
          Length = 670

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKI 109
            ++++     ++V  H + D+  + +   + + +            +    ++++  GK+
Sbjct: 417 SLVKEEEVDGLVVFAH-HHDVFEIIQKVLEAKGITYARITGEENVVQRQKAVEDFQSGKV 475

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVY 168
            ++     + G G+ L       VF  L W      Q  +R+      + G +   V ++
Sbjct: 476 DVVLCSILAAGVGITLTR-AKTAVFVELDWVPGNILQAEDRL-----HRIGQEAECVDIH 529

Query: 169 YLIAQNTIDELVLQRLRTK 187
           Y++A++T+DE     L  K
Sbjct: 530 YIVARHTLDENFADYLTRK 548


>gi|89099218|ref|ZP_01172096.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. NRRL B-14911]
 gi|89086064|gb|EAR65187.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. NRRL B-14911]
          Length = 562

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 17/198 (8%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            QRE     +       N  S+      +    + +   K  K   + K +    +I+  
Sbjct: 312 LQREACSSREAVFYTLRNMVSRQEAPSDMFQEQIQFLVSKVEKVQRNSKAEKALELIKGI 371

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +   +I+   + +    LQ    Q         G         ++E  +  + +L A   
Sbjct: 372 DDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMRELFKNNVQVLIA-TE 429

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ+  N ++ + L W+    +Q I RI      + G ++ V +Y    ++T++
Sbjct: 430 AGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI-----HRLGQEKDVMIYNFAVKDTVE 483

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L+ L  K  + + ++
Sbjct: 484 EHILKLLYEKIHLFEKVI 501


>gi|23099360|ref|NP_692826.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22777589|dbj|BAC13861.1| helicase (Snf2/Rad54 family) [Oceanobacillus iheyensis HTE831]
          Length = 556

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 34/202 (16%)

Query: 22  AFNSASKTVKCLQLANG--AVY----------YDEEKHWKEVHDE--------KIKALEV 61
             +S SK     +  +   A Y           DEE   K++  +        K + +  
Sbjct: 299 GMSSFSKITYLREFCSSREACYMSLVKFVKDIEDEEHPLKQIISDLESLEQHIKAEQMVK 358

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLF 113
           +I+      +IV   + +    LQ    Q             +      +        + 
Sbjct: 359 LIQSLGDEKVIVFTEYRATQYYLQWFLQQHGITSVPFRGGFKRGKKDWMKQLFRDHAQVL 418

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NLQ+  + ++ + L W+    +Q I RI      + G ++ V +Y L+ +
Sbjct: 419 IATEAGGEGINLQF-CHNMINYDLPWNPMRLEQRIGRI-----HRFGQEKDVQIYNLVIK 472

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           NTI+E +L  L  K  +   ++
Sbjct: 473 NTIEEHMLSLLYEKIDLFQNVI 494


>gi|78045450|ref|YP_361700.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78033954|emb|CAJ19953.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 675

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 37/189 (19%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFN 78
           +  + +K  +  Q                +  +K   L   I   E ++ A I+    F 
Sbjct: 471 SLTALAKIGRLRQY---------------LERQKADWLIETIAGFEPSDKALIMC--EFQ 513

Query: 79  SDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
             +  L + F +               +    I  +  E  +        + G G  L  
Sbjct: 514 DTVEYLAEEFAKAGIEVVTFLGKHSKARKQQAIDRFQSEPTVRCFIGTTKAAGVGHTLT- 572

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NI+ F SL W     +Q  +R       + G KR V V   +   TIDE  +  ++ K
Sbjct: 573 AANIVCFASLPWTNALKKQAEDRAW-----RYGQKRVVTVLVPLFAGTIDEQAMALIQHK 627

Query: 188 STIQDLLLN 196
           + I++ LL 
Sbjct: 628 AAIENDLLE 636


>gi|12855912|dbj|BAB30499.1| unnamed protein product [Mus musculus]
          Length = 530

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 320 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 379

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 380 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 434

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 435 -AHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 480


>gi|70944659|ref|XP_742238.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521100|emb|CAH78659.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 437

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
            K+KA++  I          ++  H    +  + +   + +           +DK    I
Sbjct: 171 AKVKAIKEYITYLIDADIKFLLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREVYI 230

Query: 102 QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +    KI +      +CG GLNL    N +VF  L+W   +  Q  +R       + G
Sbjct: 231 KNFQSDEKIRIAILSITACGVGLNLT-AANTVVFGELYWVPGQMIQAEDR-----AHRIG 284

Query: 161 FKR-AVFVYYLIAQNTIDELVLQRLRTK 187
                + ++YL+AQNTIDE+V + +  K
Sbjct: 285 TTHDTINIHYLVAQNTIDEVVWKIINRK 312


>gi|119715910|ref|YP_922875.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119536571|gb|ABL81188.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 723

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ ++ ++     + G G+NLQ   N +V   L W   E  Q I+R+      + G +  
Sbjct: 603 NDPEVAVIVCSLTAAGVGVNLQVASN-VVLAELSWTDAEQTQAIDRV-----HRIGQEEP 656

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V  + +IA  TID  V + + +K+ +  + L+ 
Sbjct: 657 VTAWRIIASQTIDTRVAELIDSKAGLAAVALDG 689


>gi|224499223|ref|ZP_03667572.1| hypothetical protein LmonF1_05832 [Listeria monocytogenes Finland
           1988]
          Length = 966

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +    K Q +L         E     +   +  Q+      + E     +    K+  L 
Sbjct: 824 LAYLEKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVEN---YQGESGKLLQLF 880

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWNEGK 108
             I+ A  N   I++   F   L+ +++   +         G+T  K     +  +NEG+
Sbjct: 881 DTIQTARENGKRILIFSQFTGMLSIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGE 940

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVF 134
             +      + G GLNL  G + ++F
Sbjct: 941 NDIFLISLKAGGTGLNL-VGADTVIF 965


>gi|311742523|ref|ZP_07716332.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311314151|gb|EFQ84059.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 710

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +  +  + ++    ++ G GLNL    NI V   L W   E  Q I+R+    
Sbjct: 586 RQQNIDAFVEDPDVAVVVCSLSAAGVGLNLHVASNI-VLAELSWTDAEQTQAIDRV---- 640

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +  V  + +IA  TID  +++ + +K+ +    L+ 
Sbjct: 641 -HRIGQEEPVTAWRIIAAQTIDTKIVELIDSKAGLAARALDG 681


>gi|75760928|ref|ZP_00740938.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228902741|ref|ZP_04066888.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 4222]
 gi|74491598|gb|EAO54804.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228856928|gb|EEN01441.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 4222]
          Length = 560

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQE 103
              + +  KALE+I E  +   +++   + +    LQ    Q                ++
Sbjct: 355 IPFNSKATKALELIKEIDD--KVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKD 412

Query: 104 W------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           W      N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      
Sbjct: 413 WMKELFQNHAQV---LIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----H 463

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G K  V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 464 RLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|320326123|gb|EFW82179.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 650

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|229075933|ref|ZP_04208909.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-18]
 gi|229098700|ref|ZP_04229640.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-29]
 gi|229117725|ref|ZP_04247094.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-3]
 gi|228665702|gb|EEL21175.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-3]
 gi|228684779|gb|EEL38717.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-29]
 gi|228707248|gb|EEL59445.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-18]
          Length = 560

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNE 106
            + K      +I++ +   +++   + +    LQ    Q                ++W +
Sbjct: 357 FNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMK 415

Query: 107 G---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               K   +     + G G+NLQ+  + ++ + L W+    +Q I RI      + G K 
Sbjct: 416 ELFQKHAQVLIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLGQKN 469

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 470 DVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|229104857|ref|ZP_04235517.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-28]
 gi|228678574|gb|EEL32791.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-28]
          Length = 560

 Score = 72.3 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNE 106
            + K      +I++ +   +++   + +    LQ    Q                ++W +
Sbjct: 357 FNSKANKALELIKEIDDK-VVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMK 415

Query: 107 G---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               K   +     + G G+NLQ+  + ++ + L W+    +Q I RI      + G K 
Sbjct: 416 ELFQKHAQVLIATEAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLGQKN 469

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  ++T++E +L+ L  K  + + ++
Sbjct: 470 DVHIYNLATKHTVEEHILKLLYEKINLFERVI 501


>gi|224139690|ref|XP_002323229.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867859|gb|EEF04990.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 743

 Score = 71.9 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH----FNSDLARLQKAFPQGRTL---- 94
           +  K        K+ AL  ++++++             F+  L  L++            
Sbjct: 563 ENTKKTSRTTPSKVSALIELLKESSVVNSSSKSVVFSLFDKMLVLLEEPLKDAGFNTLQL 622

Query: 95  ------DKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       I+E+   +   +L A   +   G+NL    + +     WW+  + ++ 
Sbjct: 623 DASTDERGQAEIIKEFGSARPGTVLLASLKTSVFGINLT-AASKVYLLEPWWNSADEERA 681

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           I         + G K  V +  LIAQN+I+E +L+    K    +      +KE   V
Sbjct: 682 I-----NCVHRYGQKENVRIVRLIAQNSIEERILEMQERKKLASEAFRRQGQKERREV 734


>gi|224064045|ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2222

 Score = 71.9 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 27   SKTVKCLQL---ANGAV-----YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +     + D  K +      K+  L+ I+ K       +++   
Sbjct: 1278 TLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGHRVLLFST 1337

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N       +      + G GLN
Sbjct: 1338 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLN 1397

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1398 LQ-SADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYMEA 1439


>gi|225558413|gb|EEH06697.1| DNA repair helicase rad5,16 [Ajellomyces capsulatus G186AR]
          Length = 1118

 Score = 71.9 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAV-YYDEEKHW-----KEVHDEKIKA----LEVII 63
            L+G  +   NS  K+ K        V   +E+ +W       +   K+ A    L    
Sbjct: 734 QLEGNPVGMVNSHKKSRKKTDRKGSEVESSNEDMNWVACVGHLMPGAKLTAISSCLVNWF 793

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLL 112
           + +    +++   F      L     + R           + +    I+E+  +  I +L
Sbjct: 794 KNSVETKVVIFTQFLGMAHVLGSMCQENRWGHLSLTGKMPIRQREKCIEEFSKDPAIRIL 853

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL+L    N  +   LWW+    QQ   R+      +   KR V    ++ 
Sbjct: 854 VCSLRTAGTGLDLT-AANKCILVDLWWNEAIEQQAFFRLF-----RINQKRKVEFVRVVV 907

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +N+ID+ +      KS   D +L
Sbjct: 908 RNSIDDRLQLIQEDKSNNIDRVL 930


>gi|47221566|emb|CAF97831.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1989

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 71/216 (32%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            E +       K+  L+ ++ K       ++V       L  L+          +    G 
Sbjct: 999  EGNSLVKSSGKLMLLQKMMRKLKEGGHRVLVFSQMTKMLDLLEDFLENEGYKYERIDGGV 1058

Query: 93   TLDKDPCTIQEWNE----------------------------------GKIPLLFAHPAS 118
            T +     I  +N                                              +
Sbjct: 1059 TGNMRQEAIDRFNGEFKAVVCLDFKTQLQRSNNVLTFCLLSSSFTAPGAPQFAFLLSTRA 1118

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQ---MIERI---------------------GVT 154
             G G+NL    + ++ +   W+     Q      RI                       +
Sbjct: 1119 GGLGINL-ASADTVIIYDSDWNPHNDIQVCSATARICVFVSDRIKEDNAVCFVGALQAFS 1177

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R  + G  R V +Y  + + +++E + Q  + K  +
Sbjct: 1178 RAHRIGQNRKVMIYRFVTKASVEERITQVAKKKMML 1213


>gi|114680096|ref|YP_758509.1| global transactivator [Plutella xylostella multiple
           nucleopolyhedrovirus]
 gi|91982160|gb|ABE68428.1| global transactivator [Plutella xylostella multiple
           nucleopolyhedrovirus]
          Length = 506

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 34/196 (17%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEK------------IKALEVIIEKANAAPIIVAY 75
             +K  Q+          K+  E +D              +  ++ I+  ++   I+V  
Sbjct: 303 LILKLRQICCHPYLAMHCKNILETNDCFKMDYMSSKCKRVLDLVDDILNTSDDKIILV-S 361

Query: 76  HFNSDLARLQKAFPQ---GRTLDKDPCTIQE-------WNEGKIP---LLFAHPASCGHG 122
            +   L   +  F Q      +      +++       +N+       +L       G G
Sbjct: 362 QWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKCGGVG 421

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTIDELV 180
           LNL  GGN +V     W+ +   Q  +RI      + G  +  +VY +  +  N+I++ +
Sbjct: 422 LNL-IGGNHIVMLEPHWNPQIELQAQDRIS-----RMGQTKNTYVYKMLNVEDNSIEKYI 475

Query: 181 LQRLRTKSTIQDLLLN 196
            QR   K    + +  
Sbjct: 476 KQRQDKKIAFVNTVFE 491


>gi|302883508|ref|XP_003040654.1| hypothetical protein NECHADRAFT_79818 [Nectria haematococca mpVI
           77-13-4]
 gi|256721542|gb|EEU34941.1| hypothetical protein NECHADRAFT_79818 [Nectria haematococca mpVI
           77-13-4]
          Length = 895

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 27/150 (18%)

Query: 50  EVHDEKIKALE-----VIIEKANA---API--IVAYHFNSDLARLQKAFPQG-------- 91
                K++AL        +E  N     P+  +V  ++   L  +Q AF Q         
Sbjct: 686 HHPSAKVEALIRNLGNEQVENQNGSEARPVKSVVFSYWTKMLDLVQIAFRQSGYSYERID 745

Query: 92  ---RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +     +  N     +L A   S G G++L    N +      W+    +Q I
Sbjct: 746 GQSSLRQRHRAMSKFNNNPACTVLLATIGSAGEGIDLT-AANHVHLMEPHWNPMAEEQAI 804

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            R+      + G +R V     I   +I+E
Sbjct: 805 ARV-----HRIGQRRPVIATKYITPRSIEE 829


>gi|229821239|ref|YP_002882765.1| helicase [Beutenbergia cavernae DSM 12333]
 gi|229567152|gb|ACQ81003.1| helicase domain protein [Beutenbergia cavernae DSM 12333]
          Length = 672

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           ++         +    ++E N      + ++ ++     + G G+NLQ   + LV   L 
Sbjct: 524 RRGLRYASIRGEQTTAVRERNVTAFLEDPEVAVVVCSLTAAGVGINLQVASD-LVLAELS 582

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W   E  Q I+R+      + G  + V  + +IA  TID  + + +  K+ +    L+ 
Sbjct: 583 WTDAEQTQAIDRV-----HRIGQSQPVTAWRIIAAQTIDARIAELIDAKAGLAARALDG 636


>gi|146294462|ref|YP_001184886.1| helicase domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145566152|gb|ABP77087.1| helicase domain protein [Shewanella putrefaciens CN-32]
          Length = 877

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 52  HDEKIKALEV-----IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQ 102
           HD+K+          +++      I++   + +    +++A    F + + +        
Sbjct: 446 HDDKLSRFMDTLLKQLLKDNPNEKILIFSEYRATQEYIKEAITGQFGEDKVVLLHGGMSH 505

Query: 103 E------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +      W             + G G+NLQ   + +V + L W+     Q I R+     
Sbjct: 506 DERRDVIWQFDNEVQFLISTEAGGEGINLQQHCHTMVNYDLPWNPMRLVQRIGRL----- 560

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G ++ V V  + +  T+DE ++  +  +       + A++ +
Sbjct: 561 YRYGQQKKVVVLNVNSPGTVDEQIIALMYQRIEQVVSDMAAVQGD 605


>gi|261415452|ref|YP_003249135.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371908|gb|ACX74653.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 876

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 37/226 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +RE +     E   +  + ++ +K ++     +    EK  K   + +I  + 
Sbjct: 394 LSNYGEDEREGF---DDEATISVQTLAEPLKLMENEIDHINLLLEKATKVTSETRINRIV 450

Query: 61  VII-EKANAAPIIVAYHFNSDLARLQ------------------KAFPQGRTLDKDPCTI 101
            II EK     +++   +    + +                   ++       D     I
Sbjct: 451 EIIKEKYPNDQVLLFTEYKRTQSLMMTELMKVWGDNSVTIINGDESLKDVVYPDGCSRDI 510

Query: 102 --------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   +++N G++        + G G++LQ   ++L+   L W+     Q + R+  
Sbjct: 511 SISRNDACEKFNNGEVR-FLISTEAAGEGIDLQKNCHVLIHIDLPWNPMRLHQRVGRV-- 567

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNAL 198
               + G    V V  +   + I+  +   L  K   IQ +L  ++
Sbjct: 568 ---HRLGQTHDVEVVSVRNPDNIESKIWGYLEEKIDQIQKMLSESM 610


>gi|149637050|ref|XP_001510449.1| PREDICTED: similar to zinc finger, RAN-binding domain containing 3
           [Ornithorhynchus anatinus]
          Length = 1115

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           KE    K  A++  I+   +  +   +V  H  S L    +A  + +             
Sbjct: 344 KETTLAKAGAVKDYIKLMLQNESLKFLVFAHHLSMLQACTEAAVENKVRYIRIDGSVPSS 403

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 404 ERMHLVQQFQKDPDTRMAVLSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR---- 458

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YLIA  T+D ++   L  K+ I    LN  K+ 
Sbjct: 459 -AHRIGQCSSVNIHYLIANGTLDSVMWGMLNRKAGITGSTLNGRKER 504


>gi|170727301|ref|YP_001761327.1| helicase domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169812648|gb|ACA87232.1| helicase domain protein [Shewanella woodyi ATCC 51908]
          Length = 937

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 26/149 (17%)

Query: 52  HDEKIKALEV-----IIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTL 94
           HD K K         I++      +++   + S    L K   Q            G  L
Sbjct: 508 HDNKSKQFIDTIITKILKNNPKEKVLIFTEYRSTQQYLAKTLQQKIGADSVNLIYGGMKL 567

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D+    I ++ N G+         + G G+NLQ   +I++ + L W+     Q + R+  
Sbjct: 568 DERKQQIYDFENTGQ---FLISTEAGGEGINLQEHCHIMINYDLPWNPMRLVQRVGRL-- 622

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
               + G  + V V+ + + +++DE VL+
Sbjct: 623 ---YRYGQLKRVVVFNINSSDSLDEKVLE 648


>gi|198411801|ref|XP_002126705.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
          Length = 158

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+    +Q + R+      + G K+  F+Y L+   TI+E + QR   K  +   +
Sbjct: 2   FDPDWNPANDEQAMARVW-----RDGQKKPCFIYRLLGTGTIEEKIFQRQAHKKALSSCV 56

Query: 195 LNALKKETIH 204
           ++  +    H
Sbjct: 57  VDQEEDVARH 66


>gi|221052999|ref|XP_002257874.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|193807706|emb|CAQ38410.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1578

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++ DP         +  +      S   GLNLQ   + ++ F   ++  +  Q + R   
Sbjct: 1114 IEGDPLDEPNGGNDEAMIFMLSTRSGSLGLNLQ-SADTVIIFDSDFNPHQDIQAMCRC-- 1170

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V+  I  + ++EL+ QR + K TI D ++ A
Sbjct: 1171 ---HRIGQKNIVKVFRFITLSGVEELIFQRAQDKLTINDKVIQA 1211


>gi|156741590|ref|YP_001431719.1| helicase domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232918|gb|ABU57701.1| helicase domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 1129

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 23/162 (14%)

Query: 48  WKEVHDEKI----KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
            ++ ++ K+    +AL  + E+   A I++       L  L++              G  
Sbjct: 468 IEQENEVKLRHFRQALRTLQEQDPGAKILIFTESRDTLDYLERRMRDWGYRVCTIHGGMP 527

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           LD      + +   +  ++ A   + G G+NLQ+  ++++ + + W+    +Q + RI  
Sbjct: 528 LDARIEAEKTFKN-EAQVMVA-TEAAGEGINLQF-CHLMINYDIPWNPNRLEQRMGRI-- 582

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
               + G  R V ++ L+A +T +  VL RL  K   I+  L
Sbjct: 583 ---HRYGQTREVTIFNLVAADTREGRVLHRLFEKLDEIRSAL 621


>gi|311899397|dbj|BAJ31805.1| hypothetical protein KSE_60370 [Kitasatospora setae KM-6054]
          Length = 776

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 27/161 (16%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL---------------- 94
             K++ L  +  +A  +   ++V  +F   LA ++ A                       
Sbjct: 582 SAKLRRLRELTAEAAESGHKVVVFSYFREVLAAVRDALGAAGGGDSGSGSTVVGTIAGSL 641

Query: 95  --DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             ++    + E+   +   +L     + G GLNLQ   N+++            Q + R 
Sbjct: 642 PAEQRQELVDEFTAVQGHAVLLCQIQAGGLGLNLQ-AANVVILCEPQLKPTLEDQAVAR- 699

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                ++ G  R V V+ L+A +++D  +++ L+ K+ + D
Sbjct: 700 ----AQRMGQIRRVRVHRLLASDSLDHRLVELLKGKAELFD 736


>gi|255541636|ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis]
 gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis]
          Length = 2248

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 28/168 (16%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1299 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 1358

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGK--IPLLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N       +      + G GLN
Sbjct: 1359 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLN 1418

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + ++ +    + +  +Q + R       + G KR V V Y+ A
Sbjct: 1419 LQ-SADTVIIYDPDPNPKNEEQAVAR-----AHRIGQKREVKVIYMEA 1460


>gi|195492235|ref|XP_002093904.1| GE21549 [Drosophila yakuba]
 gi|194180005|gb|EDW93616.1| GE21549 [Drosophila yakuba]
          Length = 1272

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 24/175 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
              K        KI ++  ++ K         II+   + + L  + +A        ++ C
Sbjct: 1096 AHKSIIGDFSTKISSVVELVLKIKGDNEQEKIIIFSQWQAILIEIARALSLNGIHFRNKC 1155

Query: 100  TIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            T +++ + K P      L    +    GLNL    + +       +  + +Q I RI   
Sbjct: 1156 TNKDFEDFKNPFSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI--- 1211

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
               + G K+   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1212 --HRFGQKKPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1264


>gi|73984292|ref|XP_533335.2| PREDICTED: similar to zinc finger, RAN-binding domain containing 3
           [Canis familiaris]
          Length = 1075

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 317 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIESKTRYIRIDGSVPSS 376

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL        +VF  L+WD    +Q  +R    
Sbjct: 377 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AATYVVFAELYWDPGHIKQAEDR---- 431

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YL+A  T+D L+   L  K+ +    LN  K++
Sbjct: 432 -AHRIGQCSSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQ 477


>gi|307111780|gb|EFN60014.1| hypothetical protein CHLNCDRAFT_56509 [Chlorella variabilis]
          Length = 1238

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 37/178 (20%)

Query: 26  ASKTVKCLQL---ANGAVYYDEEKHWKEVHD-----EKIKALEVIIEKAN--AAPIIVAY 75
           AS   KC++L    N  +     + W           K+  L+ ++ K       +++  
Sbjct: 713 ASLNNKCMELRKVCNHPMLSYPPETWAVGDAIVRQCGKMLVLDRLLVKMKVTGHRVLLFS 772

Query: 76  HFNSDLARL------------------QKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFA 114
                L  L                  Q     G T L+     IQ++N    P  +   
Sbjct: 773 TMTKLLDLLEVYLRWRQLPEHLGGGTMQYLRIDGSTALEDRESAIQQFNAKDSPAFIFLL 832

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              + G GLNLQ   + +V +    + +  +Q I R       + G  + V V +L A
Sbjct: 833 SIRAAGRGLNLQ-SSDTVVIYDPDPNPKNEEQAIAR-----SHRIGQTKEVRVIHLEA 884


>gi|226225594|ref|YP_002759700.1| helicase [Gemmatimonas aurantiaca T-27]
 gi|226088785|dbj|BAH37230.1| helicase [Gemmatimonas aurantiaca T-27]
          Length = 1150

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              P   G GL L    N +V +  WW+     Q  +R       + G  + V VYYL+ 
Sbjct: 909 VLSPFVAGVGLTLTE-ANHVVHYGRWWNPAIENQATDR-----AHRIGQTKPVHVYYLLG 962

Query: 173 ------QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 Q + DE +   LR +  +    L+ + ++ 
Sbjct: 963 TYRAPEQRSFDEALDDLLRERRDLAHDFLSPVTEDA 998


>gi|242762396|ref|XP_002340369.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218723565|gb|EED22982.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 534

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDL---------ARLQKAFPQGRT-LDKDPC 99
             K   L+ ++E+    +   I++   F+  L           +      G T       
Sbjct: 401 SSKFILLKRLLEQEVTKDRKKILIFSGFDYALNCCEALLAAMGISCLRLDGNTCYSLRRY 460

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  + NE +  +      + G G+ L     ++VF  + W+ +   Q   R       +
Sbjct: 461 NIHRFRNESECKVFIMATRAGGEGITLT-AAEVVVFLDMDWNPQVTAQAEAR-----AYR 514

Query: 159 AGFKRAVFVYYLIAQNTIDE 178
            G  + V +Y L    T++E
Sbjct: 515 LGQTKPVTIYKLCTSGTVEE 534


>gi|19074332|ref|NP_585838.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19068974|emb|CAD25442.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 556

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 19/147 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCT-----IQEWNEGK 108
           L  ++EK      +V  H    +  L+  F     P  R     P T     ++++ E +
Sbjct: 387 LATMVEK--GMKFVVFCHHTEMMESLEGFFAERNVPMIRIDGSVPSTSRHLLVKKFQENE 444

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +      +C  GL L   G  +VF  L+W+     Q  +RI      + G K +V +
Sbjct: 445 EVMVALLSITACSTGLTLT-AGRAVVFAELYWNPGVLLQAEDRI-----HRIGQKSSVDI 498

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
            YL+A+ TIDE V  +L +K  + + L
Sbjct: 499 IYLVAKGTIDEYVWPKLLSKLNVLESL 525


>gi|46126713|ref|XP_387910.1| hypothetical protein FG07734.1 [Gibberella zeae PH-1]
          Length = 918

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           QL   AV     K    V D K+   E           +V   +   L  ++    Q   
Sbjct: 732 QLRTAAV-APPSKIRSLVDDIKLSPPE--------TKCVVFSTWRLTLDLVKGVLDQEGI 782

Query: 91  ------GRTLDKDPC-TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G+   KD    ++ +  +  I ++         GL L             W+  
Sbjct: 783 QSIRFDGKVPQKDRQSVVKRFESDPNIRIMLLTLTCGAVGLTLT-AACRAYLMEPHWNPT 841

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +Q + RI      + G  + V    L  +++ +E V+    +K  +  +LL+
Sbjct: 842 LEEQALARI-----HRLGQTKNVTTIRLYIRDSFEEQVMNVQESKKQLAGVLLS 890


>gi|322830312|gb|EFZ33384.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 1086

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF---NSDLA 82
               +CL L +     +           K+  L  I+          I+   +      ++
Sbjct: 858  LIDECLSLVSSGFLTE-----FVGLSGKMTVLISILHSIREKKEKAIIFSQYVGSQDFIS 912

Query: 83   RLQKAFPQGRTL-------DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVF 134
            R   +F    +        ++   TI+++ E  KI  L        +GL+     +++++
Sbjct: 913  RTLTSFDIVSSTIRGRDCHERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTAANHVILW 972

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQD 192
               WW+ +   Q I R       +    RAV VY L +  ++TI   VL+    K  +  
Sbjct: 973  -DSWWNPQVESQAIAR-----AYRRNQTRAVIVYRLASEFEDTI---VLKTQIRKLALFR 1023

Query: 193  LLLN 196
             ++N
Sbjct: 1024 CIMN 1027


>gi|219883149|ref|YP_002478311.1| helicase domain protein [Cyanothece sp. PCC 7425]
 gi|219867274|gb|ACL47612.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 894

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               IQ +NEG+         + G G++LQ   + L+   + W+     Q + R+     
Sbjct: 519 RERAIQLFNEGEAR-FLVSTEAAGEGVDLQQNCHTLIHVDIPWNPMRLHQRVGRL----- 572

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
            + G    V V  L   +TI+  + +RL  K   IQ  L
Sbjct: 573 YRYGQTHKVEVVTLRNPDTIEATIWERLEEKMQRIQLAL 611


>gi|308811198|ref|XP_003082907.1| SNF2 domain-containing protein / helicase domain-containing protein
           (ISS) [Ostreococcus tauri]
 gi|116054785|emb|CAL56862.1| SNF2 domain-containing protein / helicase domain-containing protein
           (ISS) [Ostreococcus tauri]
          Length = 596

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
           +     LE +I+ + +   I   H    L  +     + +                  + 
Sbjct: 363 NAVCDYLETLIDGSASEKFIFFAHHGVMLDAVSAFLEKKKCKHIRIDGSTPSAARGDLVN 422

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++       +      + G GL L    + ++F  + W   +  Q  +R       + G 
Sbjct: 423 KFQRDDSTRIAVLSIKAAGMGLTLT-AASTVIFGEMVWTPGDLIQAEDR-----AHRIGQ 476

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +V V YL A++TIDE++ Q +R K      +LN    + +
Sbjct: 477 ASSVLVQYLHARDTIDEIIWQTIRRKLDTLGTVLNGQSGDHL 518


>gi|24659216|ref|NP_648034.1| CG7376 [Drosophila melanogaster]
 gi|7295362|gb|AAF50680.1| CG7376 [Drosophila melanogaster]
          Length = 1270

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 24/175 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
              K        KI ++  ++ K         IIV   + + L  + +A        ++ C
Sbjct: 1095 AHKSIIGDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKC 1154

Query: 100  TIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            T +++++ K PL     L    +    GLNL    + +       +  + +Q I RI   
Sbjct: 1155 TNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI--- 1210

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
               + G KR   V+  I   TI+E +L  + +            ++++ L++LKK
Sbjct: 1211 --HRFGQKRPTKVHRFIVNETIEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1263


>gi|119479149|ref|XP_001259603.1| helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119407757|gb|EAW17706.1| helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 565

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 30/200 (15%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE-----VHDEKIKALEVIIE----KANAAPIIVAY 75
           +A++  +  Q  +     DEE  W       +   K+  +  ++     +   A ++V  
Sbjct: 294 TAAQRSRMKQTGDEQQNEDEELDWISAAQGGMPGAKVDKVRELVANWVREDPDAKVVVFT 353

Query: 76  HFNSDLARL------------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            F  D  R+             +   +     +D    +   + ++ ++ A   + G GL
Sbjct: 354 QF-LDFVRIFSSICTKEGWAHCRLTGKMSIGARDSSMNEFREKREVKVMIASLMAGGTGL 412

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           ++    N  +   LWW+    QQ   R+      + G ++ V V  +I QNTID+ +LQ 
Sbjct: 413 DMSM-ANKCILVDLWWNEAVQQQAFCRL-----YRIGQEKVVEVVKIIVQNTIDDYILQL 466

Query: 184 LRTKSTIQDLLL--NALKKE 201
              KS   +  +   AL+K 
Sbjct: 467 QTKKSANINSTIGEEALQKR 486


>gi|148549817|ref|YP_001269919.1| non-specific serine/threonine protein kinase [Pseudomonas putida F1]
 gi|148513875|gb|ABQ80735.1| Non-specific serine/threonine protein kinase [Pseudomonas putida F1]
          Length = 1082

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 31/209 (14%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAA 69
             ++ +  +  +     +  L+L     Y  +       +  K++     LE I    N  
Sbjct: 864  QIEEQLDQKTSGMLGLLHRLKLICAHPYSVQPDTRLRDNSPKLQWLIQTLESIKRAGNGD 923

Query: 70   PIIVAYHFNSDLARLQKAFPQ----------------GRTLDKDPCTIQEWNE-GKIPLL 112
             +IV          LQ A  Q                 ++ +     I ++ E     ++
Sbjct: 924  KVIVFTELRDIQRELQHAIQQHFGFRATVINGDTSTSSQSANSRQRLIDQFQELPGFAVI 983

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+N+Q   N ++ F+  W+  +  Q  +R       + G ++ V+VYY   
Sbjct: 984  ILSTIAVGFGVNVQ-AANHVIHFTRCWNPAKEDQATDR-----AYRIGQQKDVYVYYPTV 1037

Query: 173  QN----TIDELVLQRLRTKSTIQDLLLNA 197
            ++    T +  + + L  +  +   +L+ 
Sbjct: 1038 RDAAMPTFEATLDELLSKRRALARDMLSG 1066


>gi|301384370|ref|ZP_07232788.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           Max13]
          Length = 222

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 60  KVRIVADLMAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDA 119

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 120 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 173

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 174 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 207


>gi|284029135|ref|YP_003379066.1| helicase domain-containing protein [Kribbella flavida DSM 17836]
 gi|283808428|gb|ADB30267.1| helicase domain protein [Kribbella flavida DSM 17836]
          Length = 708

 Score = 71.5 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  + N+  + +      + G GLNLQ   N +V   L W   E  Q I+R+    
Sbjct: 585 RQKNIDAFVNDAGVAIAVCSLLTAGVGLNLQVASN-VVLAELSWTNAEQTQAIDRV---- 639

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +  V  + +IA  TID  +   +  K+ +  + L+ 
Sbjct: 640 -HRIGQEEPVTAWRIIAAQTIDTRIADLIDAKAGLAAMALDG 680


>gi|262113299|emb|CBH29315.1| superfamily II DNA/RNA helicase, SNF2 family [uncultured bacterium]
          Length = 129

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L  +  ++  G+T ++     Q  N+ +I +      + G GLNL    + +     WW+
Sbjct: 11  LRDIPFSYLTGQTTNRSKVVEQFQNDDQIRVFLISLKAGGIGLNLTQ-ADYVYLIDPWWN 69

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                Q I+R+      + G ++ V    L
Sbjct: 70  PAVENQAIDRV-----YRIGQQKNVVAVRL 94


>gi|242063742|ref|XP_002453160.1| hypothetical protein SORBIDRAFT_04g001010 [Sorghum bicolor]
 gi|241932991|gb|EES06136.1| hypothetical protein SORBIDRAFT_04g001010 [Sorghum bicolor]
          Length = 2166

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 28   KTVKCLQL---ANGAVYY----DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
               KC++L    N  +      +  K +      K+  L+ I+ K +     +++     
Sbjct: 1258 LNNKCMELRKVCNHPLLTYPFLNHGKDFMIRSCGKLWNLDRILIKLHKAGHRVLLFSTMT 1317

Query: 79   SDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQ 126
              L          RL      G T L+     I ++N       +      + G GLNLQ
Sbjct: 1318 KLLDIMEDYLQWRRLVYRRIDGTTSLEDRESAIVDFNRPGSDCFIFLLSIRAAGRGLNLQ 1377

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
               + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1378 -SADTVVIYDPDPNPQNEEQAVAR-----AHRIGQTREVKVIYMEA 1417


>gi|260823378|ref|XP_002604160.1| hypothetical protein BRAFLDRAFT_119758 [Branchiostoma floridae]
 gi|229289485|gb|EEN60171.1| hypothetical protein BRAFLDRAFT_119758 [Branchiostoma floridae]
          Length = 761

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 35/148 (23%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
              K+  L+ ++   K     ++V       L  LQ                        
Sbjct: 251 ASGKLFLLDQLLSYLKKKGHKVLVFSQMTRVLDILQDYLGYR------------------ 292

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                     G GLNL    + ++F    ++ +   Q   R       + G  R V +  
Sbjct: 293 ---------GGQGLNL-ASADTVIFMDSDFNPQNDLQAAAR-----AHRIGQTRPVKIIR 337

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           LI ++T++E++L+R   K  + + ++  
Sbjct: 338 LIGRSTVEEIILKRAEAKLKLTNSVIEG 365


>gi|16197925|gb|AAL13727.1| LD03886p [Drosophila melanogaster]
          Length = 558

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 24/175 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
             K        KI ++  ++ K         IIV   + + L  + +A        ++ C
Sbjct: 383 AHKSIIGDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKC 442

Query: 100 TIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           T +++++ K PL     L    +    GLNL    + +       +  + +Q I RI   
Sbjct: 443 TNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI--- 498

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
              + G KR   V+  I   TI+E +L  + +            ++++ L++LKK
Sbjct: 499 --HRFGQKRPTKVHRFIVNETIEENILSLITSADDTTTLSTHWDLENMTLDSLKK 551


>gi|119632037|gb|EAX11632.1| zinc finger, RAN-binding domain containing 3, isoform CRA_d [Homo
           sapiens]
          Length = 458

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +T            
Sbjct: 261 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSS 320

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 321 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 375

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 376 -AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|297849318|ref|XP_002892540.1| hypothetical protein ARALYDRAFT_888252 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338382|gb|EFH68799.1| hypothetical protein ARALYDRAFT_888252 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 598

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 18/160 (11%)

Query: 43  DEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---- 94
           D           KI+AL      ++    +A  ++   + S L  +++   +        
Sbjct: 420 DTNSIILRSSCTKIEALREEITWMLGTDESAKAVIFSRYKSFLELIERQLTKSGLRCVKL 479

Query: 95  ----DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               D      +   +G+  +L       G  L+L    + +      W+    +Q + R
Sbjct: 480 SESADGKAALQRFKEDGQCKILLTTFEIVGDLLDLSVASH-VFLMDPGWNPITDRQALAR 538

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +   R       +   +   I++ TI+E ++  L+ K   
Sbjct: 539 VQTVR-----QSKPTRMVKFISKGTIEEKIIDVLQEKQNT 573


>gi|145348662|ref|XP_001418764.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578994|gb|ABO97057.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1156

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFA 114
            L  ++E       +       D   L+     G T L++    I ++N       +   
Sbjct: 813 KLLDLLE-----NYLQWRWTTPDGQDLKYCRIDGNTSLEQREIAINDFNAPHSDKFIFLL 867

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNLQ   + +V +    + +  +Q I R       + G  R V V +  A  
Sbjct: 868 SIRAAGRGLNLQT-ADTVVVYDPDPNPKNEEQAIAR-----AHRIGQTREVRVIHFEA-- 919

Query: 175 TIDELVLQRLR--TKSTI 190
            +D+ ++Q+ +   K  +
Sbjct: 920 -VDDDIVQKKKGSKKEEV 936


>gi|289618249|emb|CBI54973.1| unnamed protein product [Sordaria macrospora]
          Length = 273

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 30/178 (16%)

Query: 28  KTVKCLQL---ANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYH--FN 78
           +T KCL L       +Y       ++++D  +     AL+ I+   N    +  Y+  F 
Sbjct: 96  RTDKCLDLPPSTATTIYQTLSDQEQKLYDAILSRAKWALDDIV-SGNDKGALKLYNVLFT 154

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           + L    +     +           +      +  AHP      LNL    ++ V     
Sbjct: 155 ATLK--MRMMKAAKIFSSAQTAAVLF------VPIAHP------LNLTAASHVHV-VEPH 199

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+     Q I R       + G  + V V   I + T++E ++     K T+  L  +
Sbjct: 200 WNPSVEAQAIAR-----AIRMGQMKNVIVTRYIMKGTVEESIVALQTKKQTLAKLTFD 252


>gi|156093697|ref|XP_001612887.1| helicase [Plasmodium vivax SaI-1]
 gi|148801761|gb|EDL43160.1| helicase, putative [Plasmodium vivax]
          Length = 1618

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              +  +      S   GLNLQ   + ++ F   ++  +  Q + R       + G K  V
Sbjct: 1118 HDETMIFMLSTRSGSLGLNLQT-ADTVIIFDSDFNPHQDIQAMCRC-----HRIGQKNVV 1171

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+  I  + ++EL+ QR + K TI D ++ A
Sbjct: 1172 KVFRFITLSGVEELIFQRAQDKLTINDKVIQA 1203


>gi|297824661|ref|XP_002880213.1| ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata]
 gi|297326052|gb|EFH56472.1| ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata]
          Length = 2186

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 28/168 (16%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1266 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 1325

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N+      +      + G GLN
Sbjct: 1326 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 1385

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1386 LQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYMEA 1427


>gi|40882196|emb|CAF06022.1| related to regulator of chromatin [Neurospora crassa]
          Length = 451

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 51  VHDEKIKAL-EVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           +   K+KA+ + ++E          VA         + +     RT   DP         
Sbjct: 297 LFSTKLKAVRKQVLEAGTGTKQDAGVAALLVHGKTSISERTRLIRTFQGDPQAF------ 350

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L     +   GLNL    ++ V     W+     Q I R       + G  + V V
Sbjct: 351 ---ILIMSVGTGAVGLNLTAASHVHV-VEPHWNPSVEAQAIAR-----AVRMGQTKNVLV 401

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              I + T+++ ++     K T+  L  +
Sbjct: 402 TRYIMKRTVEDNIVALQTKKQTLAKLTFD 430


>gi|313901547|ref|ZP_07834991.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
 gi|313468186|gb|EFR63656.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
          Length = 524

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
           + K   LE ++EK +  P++V   F +    L +   +               +      
Sbjct: 318 NHKALMLERLVEKLDE-PVVVFTEFRATQDYLARRLRRAGVETVIYHGAMGACERDAAKA 376

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +G    +       G GLNLQ+  N +V + L W+    +Q I R+      + G +
Sbjct: 377 RFRKGAR--VLISTECGGQGLNLQFCRN-VVNYDLPWNPMRVEQRIGRV-----HRLGQE 428

Query: 163 -RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              V V+ L A+ TI+E +L+ L  K  +   ++
Sbjct: 429 AETVRVFNLYARRTIEEYILRLLDEKINLFRQVI 462


>gi|117926000|ref|YP_866617.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609756|gb|ABK45211.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 1170

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 22/196 (11%)

Query: 17  GENIEAFNSASKTVKCLQL-ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            + I+   +  +T++ L++ A   V+  +++ W+E+     +  E+     +   +I+  
Sbjct: 455 AQTIQELEAEIETLRLLEMQAKLVVHSGKDRKWEELSSLLQEKPEMFSASGHRRKMIIFT 514

Query: 76  HFNSDLARLQKAFP-------------QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGH 121
                L  L++                 G   D      +E+ N   + +L A   + G 
Sbjct: 515 EHKDTLNYLRERIGSLLGAPGAVVVIHGGVNRDDRRKIQEEFRNNPDVLILLA-TDAAGE 573

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   N++V + L W+    +Q   RI      + G      ++ ++A  T +  V 
Sbjct: 574 GVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNIVAHGTREGEVF 627

Query: 182 QRLRTKSTIQDLLLNA 197
            +L  K  I+   L  
Sbjct: 628 TKLLEKLEIERAALGG 643


>gi|71662347|ref|XP_818182.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70883417|gb|EAN96331.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 986

 Score = 71.5 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF---NSDLA 82
              +CL L +     +           K+  L  I+          I+   +      ++
Sbjct: 758 LIDECLSLVSSGFLTE-----FVGLSGKMTVLISILHSIREKKEKAIIFSQYVGSQDFIS 812

Query: 83  RLQKAFPQGRTL-------DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
           R   +F    +        ++   TI+++ E + I  L        +GL+     +++++
Sbjct: 813 RTLTSFDIVSSTIRGRDCHERRRRTIEKFREDENITCLLLSTQIGAYGLDFTAANHVILW 872

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQD 192
              WW+ +   Q I R       +    RAV VY L +  ++TI   VL+    K  +  
Sbjct: 873 -DSWWNPQVESQAIAR-----AYRRNQTRAVIVYRLASEFEDTI---VLKTQIRKLALFR 923

Query: 193 LLLN 196
            ++N
Sbjct: 924 CIMN 927


>gi|257486838|ref|ZP_05640879.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 650

 Score = 71.1 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|302325491|gb|ADL24692.1| SNF2/helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 749

 Score = 71.1 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 37/226 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +RE +     E   +  + ++ +K ++     +    EK  K   + +I  + 
Sbjct: 394 LSNYGEDEREGF---DDEATISVQTLAEPLKLMENEIDHINLLLEKATKVTSETRINRIV 450

Query: 61  VII-EKANAAPIIVAYHFNSDLARLQ------------------KAFPQGRTLDKDPCTI 101
            II EK     +++   +    + +                   ++       D     I
Sbjct: 451 EIIKEKYPNDQVLLFTEYKRTQSLMMTELMKVWGDNSVTIINGDESLKDVVYPDGCSRDI 510

Query: 102 --------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   +++N G++        + G G++LQ   ++L+   L W+     Q + R+  
Sbjct: 511 SISRNDACEKFNNGEVR-FLISTEAAGEGIDLQKNCHVLIHIDLPWNPMRLHQRVGRV-- 567

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNAL 198
               + G    V V  +   + I+  +   L  K   IQ +L  ++
Sbjct: 568 ---HRLGQTHDVEVVSVRNPDNIESKIWGYLEEKIDQIQKMLSESM 610


>gi|330885778|gb|EGH19927.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 652

 Score = 71.1 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|15615380|ref|NP_243683.1| Snf2/Rad54 family helicase [Bacillus halodurans C-125]
 gi|10175438|dbj|BAB06536.1| helicase (Snf2/Rad54 family) [Bacillus halodurans C-125]
          Length = 566

 Score = 71.1 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 21/153 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEW---- 104
            K +    +I++ N   +I+   + +    LQ    Q                ++W    
Sbjct: 357 AKAEKALELIQQINDK-VIIFTEYRATQLYLQWYLKQHGISSVPFRGGFKRGKKDWMRQL 415

Query: 105 --NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N  ++        + G G+NLQ+  + ++ + L W+    +Q I RI      + G  
Sbjct: 416 FENRAQV---LIATEAGGEGINLQF-CHHIINYDLPWNPMRIEQRIGRI-----HRLGQT 466

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V +Y    ++TI+E +L  L  K  + + ++
Sbjct: 467 EDVRIYNFAVKDTIEEQILTLLYEKIQLFERVV 499


>gi|289625868|ref|ZP_06458822.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 652

 Score = 71.1 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|195337877|ref|XP_002035552.1| GM14768 [Drosophila sechellia]
 gi|194128645|gb|EDW50688.1| GM14768 [Drosophila sechellia]
          Length = 1208

 Score = 71.1 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 24/174 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             K        KI ++  ++ K         IIV   + + L  + +A        ++ CT
Sbjct: 1034 HKSIIGDFSTKIASIVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCT 1093

Query: 101  IQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +++++ K P      L    +    GLNL    + +       +  + +Q I RI    
Sbjct: 1094 NKDFDDFKNPYSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI---- 1148

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
              + G KR   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1149 -HRFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLGTHWDLENMTLDSLKK 1201


>gi|23577840|ref|NP_703032.1| global transactivator [Rachiplusia ou MNPV]
 gi|23476485|gb|AAN28032.1| global transactivator [Rachiplusia ou MNPV]
          Length = 505

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 53/236 (22%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSAS----------KTVKCLQLANGAVYYDEEK 46
            Y K +    C+ +   ++A       N+ S            +K  Q+         +K
Sbjct: 266 LYDKLK----CESEEAYVKAVAARETENALSRLQQMQHVLWLILKLRQICCHPYLAMHDK 321

Query: 47  HWKEVH------------DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---G 91
           +  E +               +  ++ I+  ++   I+V   +   L   +  F Q    
Sbjct: 322 NILETNGCFKMDYMSSKCKRVLDLVDNILNTSDDKIILV-SQWVEYLKIFENFFKQKNIA 380

Query: 92  RTLDKDPCTIQE-------WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             +      +++       +N+      +L       G GLNL  GGN +V     W+ +
Sbjct: 381 TLMYTGQLKVEDRILAETTFNDATNTHRILLLSIKCGGVGLNL-IGGNHIVMLEPHWNPQ 439

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q  +RI      + G  +   VY +  +  N+I++ + QR   K    + +  
Sbjct: 440 IELQAQDRIS-----RMGQTKNTHVYKMLNVEDNSIEKYIKQRQDKKIAFVNTVFE 490


>gi|302775146|ref|XP_002970990.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
 gi|300160972|gb|EFJ27588.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
          Length = 692

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 55  KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTI------- 101
           K+ A++  +          +V  H ++ +  + +   +       +D D   +       
Sbjct: 471 KVPAVQDYLSTMLETNCKFLVFAHHHTMVNGIDEHLKKKNVEFIRIDGDTSPVIRQSMVD 530

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  N  K+        + G GL L    + ++F  + W   +  Q  +R       + G 
Sbjct: 531 KFQNNEKVRAAVLSIRAAGLGLTLT-SASTVIFAEMTWTPGDLIQAEDR-----AHRIGQ 584

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +V +YYL A +TID+ + + +  K      +LN  ++ET+ V
Sbjct: 585 RSSVNIYYLHAPDTIDDFIWETIHRKLGNLGQVLNG-REETMRV 627


>gi|296808231|ref|XP_002844454.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238843937|gb|EEQ33599.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1172

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 47   HWKEVHDEKI-KALEVIIEKANAAPIIVAY-------HFNSDLARL-QKAFPQGRTLD-- 95
                    K+   LE ++E  ++  II+ Y            L  L         TL   
Sbjct: 867  RVIGTVSAKLTYLLEKVLEFQDSEKIIIFYESENTAFWIAEGLELLGTDFRIYASTLKPS 926

Query: 96   KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    +  +NEG+ + +L        HGL++    + +   +  WD     Q I+R    
Sbjct: 927  QKSEYLSVFNEGESVRVLLMDLRQAAHGLHI-AAASRVYIVNPIWDPNIESQAIKR---- 981

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
               +    R V+V  L+ + T++E +L+R +           K  + D  ++ +
Sbjct: 982  -AHRISQSRPVYVETLVLKGTLEEKMLKRRKQMSSTEMQHAEKDMLDDNTMSYI 1034


>gi|168009588|ref|XP_001757487.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691181|gb|EDQ77544.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 952

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 29/184 (15%)

Query: 36  ANGA--VYYDE--EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP 89
           ANG      D   +         K+K +  +++   A    +++   +   LA ++    
Sbjct: 732 ANGCKRTQKDPRLKGDVDVKAGVKLKWVLDLVQLCDAAKEKVLIFSEYLYSLALIENMTM 791

Query: 90  QGRTLDKDPCTIQ---------------EWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
           Q     +    ++               ++N + +  +L A   +CG G++L  G + +V
Sbjct: 792 QRMNWSRGSQILRLDGSLPPQEREMVQHKFNTDPEAKMLCASIKACGEGISL-VGASRVV 850

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR-LRTKSTIQD 192
              + W+    +Q I R       + G +R V VY LIA +T +   +      K  +  
Sbjct: 851 LLEVHWNPSVPRQAISR-----AFRIGQQRKVVVYRLIAADTYEATNMHAVATRKEWLSR 905

Query: 193 LLLN 196
           LL +
Sbjct: 906 LLFD 909


>gi|218531254|ref|YP_002422070.1| non-specific serine/threonine protein kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523557|gb|ACK84142.1| Non-specific serine/threonine protein kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1033

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 21/131 (16%)

Query: 53  DEKIKALEVIIEKANAAPIIVA-YHFNS---DLARLQKAFPQGRTLD------KDPCTIQ 102
               + L VI E+   A + V          +LAR +   P+   ++      +    + 
Sbjct: 820 SAVFEILGVIAERRERALVFVEHRRMQHRLVELARARFNLPRVDLINGDTPISRRQAIVN 879

Query: 103 EWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +      E    +L   P + G GL L    + ++  S WW+    +Q  +R+      
Sbjct: 880 RFQRHLEGEPAFDVLVLGPKAAGTGLTLTAATH-VIHLSRWWNPAVEEQCNDRV-----H 933

Query: 158 QAGFKRAVFVY 168
           + G  R V ++
Sbjct: 934 RLGQTRPVTIH 944


>gi|56475577|ref|YP_157166.1| helicase/SNF2 domain-containing protein [Aromatoleum aromaticum
           EbN1]
 gi|56311620|emb|CAI06265.1| helicase/SNF2 family domain protein [Aromatoleum aromaticum EbN1]
          Length = 883

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 38/204 (18%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEVIIE-KANAA 69
           +L+    E  + + +  K L + N A +  +     H  +V + +I+ +  IIE +    
Sbjct: 404 ELEHALWEW-SRSDRQGKILLMENEAEHLSDLIAAAHAVKV-ETRIQRVIEIIETRFPGR 461

Query: 70  PIIVAYHFNSDLARLQKA-----------------------FPQGRTLDK---DPCTIQE 103
            +++   +    A L  A                       F  GRTL K          
Sbjct: 462 SVLLFTEYKRTQALLMSALIAHFGDDCVGFINGDNRLDGVVFADGRTLSKSALREDVCDA 521

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +N G+I        + G G++LQ   + L+   L W+     Q + R+      + G  +
Sbjct: 522 FNAGEIR-FLISTEAGGEGIDLQEHCSALIHVDLPWNPMRLHQRVGRLN-----RYGQTQ 575

Query: 164 AVFVYYLIAQNTIDELVLQRLRTK 187
           +V V  L   +T++ ++ ++L  K
Sbjct: 576 SVEVVSLRNPHTVESMIWEKLEEK 599


>gi|299537022|ref|ZP_07050327.1| ATP-dependent helicase yqhH [Lysinibacillus fusiformis ZC1]
 gi|298727602|gb|EFI68172.1| ATP-dependent helicase yqhH [Lysinibacillus fusiformis ZC1]
          Length = 502

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQE 103
           + K +    I+++AN   +I+   + +    LQ              G+        ++ 
Sbjct: 345 NSKAEKTLEIVKQANDK-VIIFTEYRATQIYLQWYLHSNGISSVLFNGKFNKSKRDYMKH 403

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + +  +L A   + G G+NLQ+  + ++ + L W+  + +Q I R+      + G + 
Sbjct: 404 LFKERAQVLIA-TEAGGEGINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEH 456

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  ++TI+E +L+ L TK  + + ++
Sbjct: 457 DVHIYNLAIEHTIEEKILELLHTKIDVFEKVV 488


>gi|298488366|ref|ZP_07006398.1| DNA helicase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157188|gb|EFH98276.1| DNA helicase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 650

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 488 KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLARGVGCVTLVGSDSPKKRQKAIDA 547

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 548 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 601

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 602 RLVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 635


>gi|258511218|ref|YP_003184652.1| helicase domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477944|gb|ACV58263.1| helicase domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1170

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 26/219 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +Y + + E+          A          +   LA+  V  +++  W ++        E
Sbjct: 436 EYEELEDEIASQATAAQTIAELEQEIRTLERLEALAHQLVLSNQDSKWTQLSTLLHDEPE 495

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQE--WNE 106
           +  +  N   +I+       L  LQ+                G T   +   IQE  W++
Sbjct: 496 MRDKSGNRRKLIIFTEHRDTLNYLQRKMEGFLGRPDAIVAIHGGTKRDERRKIQEKFWHD 555

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +L A   + G G+NLQ   N+L+ + L W+    +Q   RI      + G     +
Sbjct: 556 PDTLILLA-TDAAGEGVNLQN-ANLLINYDLPWNPNRLEQRFGRI-----HRIGQTEVCY 608

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           ++ L+A  T +  V QRL  K  ++     ALK     +
Sbjct: 609 MWNLVAAKTREGEVFQRLFEKLKVER---EALKGRVFDI 644


>gi|269860391|ref|XP_002649917.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066677|gb|EED44151.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 568

 Score = 71.1 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA------- 87
              V  D  K +K   + K +++   I+K   N    +V  H  + +  L+         
Sbjct: 379 GNTVEDDVIKAYKLAAEIKQESVINYIKKMITNNDKFLVFAHHQTMINELENCCQNCNIY 438

Query: 88  --FPQGRT-LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                GRT   K    ++ +    +  +      +   GL L    + +VF  L+W+   
Sbjct: 439 YIRIDGRTGKQKRYELVELFQTNTEYQVAILSLTAASTGLTLTAAKS-VVFAELYWNPGT 497

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             Q  +RI      + G    V +YYLI + TIDE+V   L  K  I + +
Sbjct: 498 LMQAEDRI-----HRIGQTTPVDIYYLICKKTIDEIVWPYLLKKLNILEKI 543


>gi|169611232|ref|XP_001799034.1| hypothetical protein SNOG_08724 [Phaeosphaeria nodorum SN15]
 gi|111062772|gb|EAT83892.1| hypothetical protein SNOG_08724 [Phaeosphaeria nodorum SN15]
          Length = 1369

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              K  +L A     G GLNL    + ++    WW+    QQ        R  + G K   
Sbjct: 1230 NDKCNILLASLRCGGLGLNLTM-ASRVIMVDPWWNEASEQQA-----FCRVFRIGQKEET 1283

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            F+  L  +NT+D  +++    K+     ++ 
Sbjct: 1284 FMSRLCVKNTVDSKLIEMQERKTKEIGEIME 1314


>gi|82914730|ref|XP_728823.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485366|gb|EAA20388.1| Arabidopsis thaliana BRAHMA ortholog-related [Plasmodium yoelii
            yoelii]
          Length = 1529

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNE----------GKIPLLFAHPASCGHGLNLQYG 128
            SD   +  +F Q + +     + Q  N+              +      S   GLNLQ  
Sbjct: 1004 SDRRDIIDSFNQNKFVKNSDNSSQNKNDSLLLDPASKLDDTMIFILSTRSGSLGLNLQ-A 1062

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++ F   ++  +  Q + R       + G K  V V+  I  ++++EL+ Q+ + K 
Sbjct: 1063 ADTVIIFDSDFNPHQDIQAMCRC-----HRIGQKNVVKVFRFITLSSVEELIFQKAKDKL 1117

Query: 189  TIQDLLLNA 197
             I D ++ A
Sbjct: 1118 NINDKVIQA 1126


>gi|281207984|gb|EFA82162.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 498

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTI 101
           K+ A+   IE    + +  ++  H  + +  +++   + +              +     
Sbjct: 106 KMAAISKFIEDKLEDNSKFLIFAHHKTVMDGIEQLVKKKKVEYIKIDGTTPAHARSNLVN 165

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               + KI +      + G GL L    ++ +F  L+W      Q   R+      + G 
Sbjct: 166 IFQTDEKIKVAILSITAAGTGLTLT-AASVAIFAELYWTPGVLMQAEARV-----HRFGQ 219

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R+V + YL+  NTIDE +   L +K  +   +L+ 
Sbjct: 220 NRSVLIQYLVGINTIDESIWSMLESKKDVLGRILDG 255


>gi|195588190|ref|XP_002083841.1| GD13945 [Drosophila simulans]
 gi|194195850|gb|EDX09426.1| GD13945 [Drosophila simulans]
          Length = 1270

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 24/174 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             K        KI ++  ++ K         IIV   + + L  + +A        ++ CT
Sbjct: 1096 HKSIIGDFSTKIASIVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCT 1155

Query: 101  IQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +++++ K P      L    +    GLNL    + +       +  + +Q I RI    
Sbjct: 1156 NKDFDDFKNPYSNVTCLLMPLSKGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI---- 1210

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
              + G KR   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1211 -HRFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLGTHWDLENMTLDSLKK 1263


>gi|9629985|ref|NP_046203.1| global transactivator [Orgyia pseudotsugata MNPV]
 gi|2493353|sp|O10302|GTA_NPVOP RecName: Full=Probable global transactivator; AltName:
           Full=ATP-dependent helicase GTA
 gi|7514943|pir||T10316 global transactivator - Orgyia pseudotsugata nuclear polyhedrosis
           virus
 gi|1911293|gb|AAC59046.1| global transactivator [Orgyia pseudotsugata MNPV]
          Length = 498

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS------KTVKCLQLANG------AVYYDEEKHWK 49
           + Y++ +             A  +           +  Q+         A  + E  H  
Sbjct: 264 RVYNELKSASQRAYDDAVASADKAGGMQDVLWLLCRLRQVCCHPALTKCAAMFPEHAHIF 323

Query: 50  EVH--DEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           E      K +    ++++    P   +++   +   L  +     +         G+   
Sbjct: 324 EPAYESSKCRRALELVQRVLDTPDDKVVLVSQWVEFLQLVAGLLRRRGVPILLYTGQLRV 383

Query: 96  KDPCTIQ-EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++   ++ ++N    P  +L       G GLNL  G N ++     W+ +   Q  +RI 
Sbjct: 384 EERTAVENQFNAADSPYRVLLMSIKCGGVGLNLTGG-NHIIMLEPHWNPQIELQAQDRI- 441

Query: 153 VTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
                + G K+  +VY +I   +N+I+  +  R   K T  + + +
Sbjct: 442 ----HRMGQKKRTYVYKMIVDEENSIERYMKARQDKKLTFVNKVFD 483


>gi|134287906|ref|YP_001110070.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132556|gb|ABO60182.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 682

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 19/168 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRT-----------LDK 96
           +E+   K++ +  +I+  N    +++   F  ++A  ++A  +                +
Sbjct: 508 RELESYKVRPIVEMIKDLNGDDKVLLFCEFKENVALFKQALDEVGIGYSVLTGDMSSPTR 567

Query: 97  DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I E+    +  +     A+ G G NL    N +   SL W      Q  +R     
Sbjct: 568 RQRAIDEFQSDPLKRVFITTTAAGGVGHNLT-AANYVFLVSLPWTPGLAAQAEDR----- 621

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G  R V V   + +NTID  +++  R K +I   +L+  + E +
Sbjct: 622 AFRNGQLRLVIVLIPLVENTIDMDLVEMHRNKQSIAAEILDPEEAERL 669


>gi|331028076|ref|YP_004421790.1| helicase [Roseobacter phage RDJL Phi 1]
 gi|301341539|gb|ADK73423.1| helicase [Roseobacter phage RDJL Phi 1]
          Length = 512

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 25/209 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALE 60
             Y         ++  + I         VK  Q+ +G +  +  ++H     + ++ AL 
Sbjct: 299 AVYRDLIASTILEVGDQEISLGEYPPGLVKFQQIVSGYLVDEFGDEHTIPGGNPRLDALV 358

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQ------EWN----E 106
             +E+ N   ++    F  D+ ++  A      +  T        +      E+     +
Sbjct: 359 DEVERTNGRTVVWCA-FRRDMDQVVAALKATGRKVLTYHGRSTDAEKALARKEFAPDKLD 417

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K   L  HP S G GLNL  G + ++++S   D     Q  ER         G    V 
Sbjct: 418 SKYDDLVGHPKSGGRGLNL-SGADKIIWYSHTTDAVVRFQADERATEV----GGQNVPVV 472

Query: 167 VYYLIAQNTIDELVL-QRLRTKSTIQDLL 194
               IA   +DE +L   L  K+   + +
Sbjct: 473 --NFIAPG-VDEYILDDILAPKAETAEDV 498


>gi|311269513|ref|XP_003132519.1| PREDICTED: helicase-like transcription factor-like [Sus scrofa]
          Length = 125

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 95  DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            K   +IQ +     G   ++     + G GLNL    + +      W+     Q  +R 
Sbjct: 4   KKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC 62

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 + G K+ V +   I +++++E +L+   TK  + 
Sbjct: 63  -----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELA 97


>gi|317128397|ref|YP_004094679.1| helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473345|gb|ADU29948.1| helicase domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 542

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQE 103
            + K + +  +I++++   +I+   + +    LQ        K+ P      +      +
Sbjct: 353 TNSKAEQVLKLIQQSDDK-VIIFTEYRATQLYLQWFLAQNGIKSVPFRGGFKRSKKDWMK 411

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +     + G G+NLQ+  + ++ + L W+    +Q I RI      + G ++
Sbjct: 412 QLFKDQAQVLIATEAGGEGINLQF-CHRMINYDLPWNPMRIEQRIGRI-----HRLGQEK 465

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y    ++T+++ +L+ L  K  + + ++
Sbjct: 466 DVEIYNFAVKDTVEDHILKLLYKKIGLFEGVI 497


>gi|157873415|ref|XP_001685219.1| helicase  [Leishmania major strain Friedlin]
 gi|68128290|emb|CAJ08421.1| helicase-like protein [Leishmania major strain Friedlin]
          Length = 949

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + L      + G GLNL  G + ++     ++     Q ++R       + G +  V VY
Sbjct: 783 VFLFLISTRAGGTGLNLT-GADTVILLDSDFNPHNDLQAVDRC-----HRIGQRNPVAVY 836

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
            L++ +T+ DE     +  K  ++ L+L  
Sbjct: 837 RLVSPHTVEDEWHSGIVDRKLKLEHLVLGG 866


>gi|125583090|gb|EAZ24021.1| hypothetical protein OsJ_07744 [Oryza sativa Japonica Group]
          Length = 1360

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTL---------DKDPCTIQEWNE 106
            + E      ++V   +   L+ +         + +G  +               ++ +N+
Sbjct: 1175 LCEAMKER-VLVFSQYLEPLSLIMDQLSKMFNWIEGEEILLMSGNVLVQNREALMEAFND 1233

Query: 107  --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  ++ A   +C  G+ L  G + +V   + W+       + R  + R  + G ++ 
Sbjct: 1234 MKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIGRAYRIGQEKI 1287

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LI + T ++    R   K  +  LL +
Sbjct: 1288 VYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 1319


>gi|296448804|ref|ZP_06890651.1| helicase domain protein [Methylosinus trichosporium OB3b]
 gi|296253690|gb|EFH00870.1| helicase domain protein [Methylosinus trichosporium OB3b]
          Length = 949

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 29  TVKCLQLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            + C+++        D         +E  K L  ++++     +IV   +   L  +++ 
Sbjct: 516 LLACMRMVCDTPAILDPTCRISPKLEELEKILADLLDEPERK-VIVFSEWERMLTMVREL 574

Query: 88  FPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             +              ++    I  +       LF    S   GLNLQ   + +V   L
Sbjct: 575 AGEMGVEAAWHTGSLPQERRRAEINRFKRDPACRLFFSTDSGSVGLNLQV-ASAVVNVDL 633

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+  + +Q I R       +    R+V V  L+ + +I+  +L  +  K  + D +L+ 
Sbjct: 634 PWNPAKLEQRIARAW-----RKNQPRSVSVVNLVTEGSIEHSILHLIGQKQALADGVLDG 688


>gi|254283195|ref|ZP_04958163.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR51-B]
 gi|219679398|gb|EED35747.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR51-B]
          Length = 1184

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 76/211 (36%), Gaps = 28/211 (13%)

Query: 8   QRELYCDLQGENIEAFN------SASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALE 60
           + ELY D   +   A        +    +K L+  A G V    +K W+E+        E
Sbjct: 448 EYELYADQVVDQATAAETIPELEAEILILKDLEHQALGVVQSGNDKKWEELSHLLQDRPE 507

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEW-NE 106
           +  E  +   +I+       L  L                   G   D      +E+ N 
Sbjct: 508 MYTESGSRRKLIIFTEHKDTLNYLVGRIRGMLGNPEAVITIHGGVNRDDRRKAQEEFRNN 567

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A   + G G+NLQ   N++V + L W+    +Q   RI      + G      
Sbjct: 568 RDVQVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCH 620

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++ LIA  T +  V QRL  K  I+   L  
Sbjct: 621 LWNLIASETREGEVFQRLFDKIEIEKQALGG 651


>gi|327268904|ref|XP_003219235.1| PREDICTED: transcription termination factor 2-like [Anolis
            carolinensis]
          Length = 1233

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI 101
              K+  L   ++         ++   + S L           L+ A   G    K    +
Sbjct: 1062 STKLSHLLNELKAIQGHSQKSVIVSQWTSMLKVVAVHLKKLGLKYATVDGSVNPKQRMDV 1121

Query: 102  --QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N  K P ++     + G GLNL  G + L    + W+     Q  +RI      +
Sbjct: 1122 VEEFNNNPKGPEVMLISLLAGGVGLNLVGGNH-LFLLDMHWNPALEDQACDRI-----YR 1175

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G +  V ++  + + T++E + +    K  +   +L+ 
Sbjct: 1176 VGQRNDVTIHRFVCKRTVEEKISELQTKKKELAQKVLSG 1214


>gi|240274844|gb|EER38359.1| DNA repair helicase RAD5,16 [Ajellomyces capsulatus H143]
          Length = 1112

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 49  KEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TL 94
             +   K+ A    L    + +    +++   F      L     + R           +
Sbjct: 775 HLMPGAKLTAISSCLVNWFKNSVETKVVIFTQFLGMAHVLGSMCQENRWGHLSLTGKMPI 834

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +   +I+E+  +  I +L     + G GL+L    N  V   LWW+    QQ   R+  
Sbjct: 835 RQREKSIEEFSKDPAIRILVCSLRTAGTGLDLT-AANKCVLVDLWWNEAIEQQAFFRLF- 892

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +   KR V    ++ +N+ID+ +      KS   D +L
Sbjct: 893 ----RINQKRKVEFVRVVVRNSIDDRLQLIQEDKSNNIDRVL 930


>gi|170592285|ref|XP_001900899.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158591594|gb|EDP30199.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 741

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARL-----QKAFPQGRT------LDKDPCTIQEWNEGKIPLL 112
           + A    +++  H    L  +     +K     R         +D           + + 
Sbjct: 567 DGAPKKKVLIFAHHQVVLDMISIDVAKKGLRSIRIDGTTASRLRDEQCRLFQENDDVMVA 626

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+ L    +++VF  L W+    +Q  +R       + G K +VFV YLIA
Sbjct: 627 VLSITAAGIGVTLT-AASVVVFAELHWNPGTLKQAEDR-----AHRLGQKDSVFVQYLIA 680

Query: 173 QNTIDELVLQRLRTKSTI 190
           + T D+++   ++ K  +
Sbjct: 681 KGTADDILWPLIQKKLDV 698


>gi|326437103|gb|EGD82673.1| hypothetical protein PTSG_03334 [Salpingoeca sp. ATCC 50818]
          Length = 884

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 30/173 (17%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           T+K  Q    A          ++       LE +   A    +++  H    +  L +A 
Sbjct: 520 TLKLFQATGQA----------KLAACVTYVLEQL---AKGVKMLLFAHHQPVMDGLMQAL 566

Query: 89  PQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +                ++    +   +    +      + G GL L +   ++VF  L
Sbjct: 567 CEKSIRHVRIDGSTPSSLRNELATRFQTDETCRVALLSITAAGTGLTL-HAATLVVFAEL 625

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +W+  +  Q  +R       + G + AV V YLI +NT+DE + +++  K  +
Sbjct: 626 FWNPGQLLQAEDR-----AHRVGQQCAVDVKYLICRNTLDESMWEKVERKMAV 673


>gi|158296666|ref|XP_317019.4| AGAP008426-PA [Anopheles gambiae str. PEST]
 gi|157014820|gb|EAA12838.4| AGAP008426-PA [Anopheles gambiae str. PEST]
          Length = 722

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL-DKDPCTIQEWNE-G 107
           L+ ++++      IV  H +  L  ++K+  +         G T  D     ++ +    
Sbjct: 496 LKEVVKEN--KKFIVFAHHHVMLDAIEKSLSKQNVDFIRIDGSTRSDLRGALVERFQSKA 553

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                     +C  G+ L    ++++F  L W+     Q       +R  + G    V V
Sbjct: 554 TCRAAVLSLKACNAGITLT-AAHLVLFAELDWNPSTLAQA-----ESRAHRIGQADNVTV 607

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A+ T D+++   L+ K   
Sbjct: 608 RYLLAKKTADDIIWTMLQRKQET 630


>gi|242222574|ref|XP_002477001.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723673|gb|EED77797.1| predicted protein [Postia placenta Mad-698-R]
          Length = 430

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N+      +      + G G+N+    +I+V +    +     Q ++R       
Sbjct: 2   AIDEYNKPDSDKFIFLLTTRAGGLGINVTT-ADIVVLYDSDLNSRADLQAMDR-----AH 55

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  + V+V+  I + +++E +L+R      +  L++   + +   
Sbjct: 56  RIGQTKQVYVFRFITEGSVEERMLERTAQALRLDQLVMQQGRMQHTK 102


>gi|159482707|ref|XP_001699409.1| hypothetical protein CHLREDRAFT_152316 [Chlamydomonas reinhardtii]
 gi|158272860|gb|EDO98655.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1513

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 53   DEKIKALEV----IIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTL-------DKD 97
            + K++AL      + E    A  +V   F+  L     RLQ      RT+        + 
Sbjct: 1315 ESKLRALMAELRAMREADPTAKALVFTQFSQALEWLRSRLQAEGFGHRTITGDMPPKRRT 1374

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   N+    +      +   G+NL    N +       +     Q I R       
Sbjct: 1375 EAITSFQNDPNTCVFLLSVRAGAVGINLT-AANHVFLLEPCMNPATEHQAIGRAW----- 1428

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQ 182
            + G  R V V  L  + +++E++++
Sbjct: 1429 RMGQSRPVTVKRLFVKGSVEEVIMK 1453


>gi|312074223|ref|XP_003139874.1| hypothetical protein LOAG_04289 [Loa loa]
 gi|307764965|gb|EFO24199.1| hypothetical protein LOAG_04289 [Loa loa]
          Length = 879

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEW-------NEGKIPLLFA 114
           A    +++    +  L   Q          R LD      + +          +I     
Sbjct: 336 AKGHRVLIFSQMSRVLDIAQDYLIYKGYNYRRLDGSVRAEERFVAVNRFQTNSEIFCFLL 395

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL   G+ ++F    ++ +   Q   R       + G  + V V  LIA+ 
Sbjct: 396 STRAGGLGLNLT-AGDTVIFLDSDFNPQNDIQAAARC-----HRIGQMKPVKVIRLIARY 449

Query: 175 TIDELV 180
           T+++++
Sbjct: 450 TVEDMI 455


>gi|218191274|gb|EEC73701.1| hypothetical protein OsI_08293 [Oryza sativa Indica Group]
          Length = 1363

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQG---------------RTLDKDPCTIQEWNE 106
            + E      ++V   +   L+ +     +                  +      ++ +N 
Sbjct: 1178 LCEAMKER-VLVFSQYLEPLSLIMDQLSKMFNWTEGEEILLMSGNVLVQNREALMEAFNN 1236

Query: 107  --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  ++ A   +C  G+ L  G + +V   + W+       + R  + R  + G ++ 
Sbjct: 1237 MKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIGRAYRIGQEKI 1290

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ Y LI + T ++    R   K  +  LL +
Sbjct: 1291 VYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 1322


>gi|317121963|ref|YP_004101966.1| helicase [Thermaerobacter marianensis DSM 12885]
 gi|315591943|gb|ADU51239.1| helicase domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 524

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
           + K   LE ++++    P++V   F +    L +   +               +      
Sbjct: 318 NHKALMLERLVQRL-GEPVVVFTEFRATQDYLARRLRRAGVETVVYHGAMGTGERDAAKA 376

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +G    +       G GLNLQ+  N +V + L W+    +Q I RI      + G +
Sbjct: 377 RFRQGAR--VLISTECGGQGLNLQFCRN-VVNYDLPWNPMRVEQRIGRI-----HRLGQE 428

Query: 163 R-AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +V V+ L A+ TI+E +L+ L  K  +   ++
Sbjct: 429 AASVRVFNLYARRTIEEYILRLLDEKINLFRQVI 462


>gi|330795379|ref|XP_003285751.1| hypothetical protein DICPUDRAFT_97160 [Dictyostelium purpureum]
 gi|325084299|gb|EGC37730.1| hypothetical protein DICPUDRAFT_97160 [Dictyostelium purpureum]
          Length = 1743

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 70   PIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
             +I+   +   L  + +A  +         +  +     I ++     I +L        
Sbjct: 1594 KVIIFSQWMDLLEIISRALKENDIEFAKISKKPNSFESAINQFRKNPNINVLLLPIQRGA 1653

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    ++ +      +     Q I R+      + G  +  FV+  I +NTI+E V
Sbjct: 1654 SGLNLIEATHVFI-VEPILNPSVEAQAINRV-----HRFGQSKETFVHRFIIKNTIEEKV 1707

Query: 181  LQRLRTKSTIQDLLLNALKKE 201
             Q  + K    D  L + K +
Sbjct: 1708 AQMNKKKEKELDWKLASNKND 1728


>gi|322493998|emb|CBZ29290.1| helicase-like protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 991

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + L      + G GLNL  G + ++     ++     Q ++R       + G +  V VY
Sbjct: 825 VFLFLISTRAGGTGLNLT-GADTVILLDGDFNPHNDLQAVDRC-----HRIGQQNPVAVY 878

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
            L++ +T+ DE   + +  K  ++ L+L  
Sbjct: 879 RLVSPHTVEDERHSRIVDGKLKLEHLVLGG 908


>gi|145542730|ref|XP_001457052.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424866|emb|CAK89655.1| unnamed protein product [Paramecium tetraurelia]
          Length = 767

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            KIKA++  I     N    +   H    L  +Q+   Q                +    
Sbjct: 423 AKIKAIKDYICTLFENEIKFLFFAHHQDVLDAVQEYCVQNEIQYMRIDGNVGVEQRHLNV 482

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N  +I +      S  +G+ L    + +VF  + W      Q  +R       + G
Sbjct: 483 QMFQNNDEIRIAILSVTSANYGITLT-AASTIVFGEMHWTPAIMLQAEDR-----AHRIG 536

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V  +YLI   T+D+ +  ++  K       ++  K
Sbjct: 537 QVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFIDGQK 575


>gi|299117109|emb|CBN73880.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2864

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 95   DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    I  +N+ +     +      +   G+NL    N +V     W+     Q + R 
Sbjct: 2548 KKRQQLISRFNDPERKSTGVFLLSTKAGNMGINL-VAANRVVLMDTSWNPANDLQAMFRC 2606

Query: 152  GVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRLRTKSTIQDLLLNA 197
                  + G K+ V V+ L+  N +++  +  +   K  +   +++A
Sbjct: 2607 -----YRFGQKKPVQVFRLVMGNKSLEYKIHNKQVAKHALAGRVVDA 2648


>gi|326675456|ref|XP_003200358.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Danio rerio]
          Length = 1644

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 28/190 (14%)

Query: 26   ASKTVKCLQLANGA----VYYDEEKH------WKEVHDEKIKALEVIIEKAN----AAPI 71
            A K   C Q  + A    V+  +  H       K  H  K++A+  +++K       A  
Sbjct: 1433 AIKCAICRQTTSHAEISYVFTTQNNHQGQDIPVKGSHSTKVEAVVRVLKKVQMTDPGAKS 1492

Query: 72   IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--------KIPLLFAHPASCGHGL 123
            +V   +   L  + KA             I ++ E         KI +L     +  +GL
Sbjct: 1493 LVFSTWQGVLDIIAKALFDNNMEFAQINGIHKFQENLSAFKYEEKINILLLPLHTGSNGL 1552

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N+    ++L       +     Q I R+      + G  +  FV+  + ++TI+E +   
Sbjct: 1553 NIIEATHVL-LVEPILNPAHELQAIGRV-----HRIGQTKPTFVHRFLIKSTIEERMQAM 1606

Query: 184  LRTKSTIQDL 193
            L+T       
Sbjct: 1607 LKTAEKSHSS 1616


>gi|323452688|gb|EGB08561.1| hypothetical protein AURANDRAFT_71563 [Aureococcus anophagefferens]
          Length = 1637

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL  G  +L+     W+     Q   R+      + G  R   V  L
Sbjct: 1374 VLLLSSRAGGAGLNL-PGACVLILLEPDWNPAVDDQTCARVW-----RPGQGRRTRVLRL 1427

Query: 171  IAQNTIDELVLQRLRTKSTI 190
             A  T++E VL R   K  +
Sbjct: 1428 AAAGTLEETVLARQAEKQAL 1447


>gi|301770701|ref|XP_002920769.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Ailuropoda melanoleuca]
          Length = 1087

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +             
Sbjct: 331 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSS 390

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 391 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR---- 445

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YL+A  T+D L+   L  K+ +    LN  K++
Sbjct: 446 -AHRIGQCTSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQ 491


>gi|294083751|ref|YP_003550508.1| hypothetical protein SAR116_0181 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663323|gb|ADE38424.1| hypothetical protein SAR116_0181 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1130

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 29/187 (15%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA-LEVIIEKANAAPIIVAY 75
            E I+A    SKT + L+     ++   EK    +   K +  L  ++ +          
Sbjct: 811 DEYIKASARLSKTFEILE----RIHKQNEKVLIFLESRKFQVVLASLVRE---------- 856

Query: 76  HFNSDLA-RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F  D +  +      G    +   T Q    G   ++   P + G GL L    N ++ 
Sbjct: 857 KFKMDHSPLIINGLISGEARQERVNTFQSNPIG-FDVMIISPKAGGVGLTLT-AANNVIH 914

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN------TIDELVLQRLRTKS 188
              WW+     Q  +R       + G  + V VY  IA+N      + D ++ + L  K 
Sbjct: 915 LERWWNPAVEDQCTDR-----AYRIGQTKTVNVYTPIAKNGSFGEKSFDCILDRLLNEKR 969

Query: 189 TIQDLLL 195
           +I   L 
Sbjct: 970 SIAKGLF 976


>gi|157870051|ref|XP_001683576.1| DNA helicase [Leishmania major strain Friedlin]
 gi|68126642|emb|CAJ04339.1| putative DNA helicase [Leishmania major strain Friedlin]
          Length = 1029

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 27/176 (15%)

Query: 51  VHDEKIKALEV----IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
               KI A++     I+E+   +   +I+  H    +  L+ A    R            
Sbjct: 459 TARAKIPAVQDYVSGIVEQHLDSGEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISG 518

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++P       E    +      S G G N     + +VF  L W+   H Q  +
Sbjct: 519 DTPPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFTC-ASTVVFTELDWNPSTHLQCED 577

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R+      + G  +   + YL+A+ T D ++   L+TK ++   +    K     V
Sbjct: 578 RV-----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFETSKMTGAEV 628


>gi|294676841|ref|YP_003577456.1| SNF2 family helicase [Rhodobacter capsulatus SB 1003]
 gi|294475661|gb|ADE85049.1| helicase, SNF2 family [Rhodobacter capsulatus SB 1003]
          Length = 1030

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 27/137 (19%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVA-------YHFNSD------LARLQKAFPQGRTLDK 96
              ++ A   I+ +  A     +V        Y F         LAR+         + +
Sbjct: 811 ASARLSATFDILRQIRARGERALVFIENRQMQYRFIEIARAEFGLARI-DLINGDTPIAQ 869

Query: 97  DPCTIQEWNE-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +  +       G   LL   P + G GL L    + ++  S WW+    +Q  +R+
Sbjct: 870 RQQIVNRFQAHLEDGGGFDLLVLGPKAAGTGLTLTAATH-VIHLSRWWNPAVEEQCNDRV 928

Query: 152 GVTRQRQAGFKRAVFVY 168
                 + G  R V ++
Sbjct: 929 -----HRLGQTRPVQIH 940


>gi|224101205|ref|XP_002312184.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222852004|gb|EEE89551.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1234

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
             ++  E I        I+V      +L      F +GR +DK          G   +L A
Sbjct: 1067 FLELFENIFRWQQGKEILV---LTGELE----LFERGRVMDKFEEL-----GGPSRVLLA 1114

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +C  G++L    + ++     W+  + +Q I R       + G ++ V+VY L+A  
Sbjct: 1115 SITACAEGISLT-AASRVILLDSEWNPSKTKQAIAR-----AFRPGQQKMVYVYQLLATG 1168

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E   +R   K  +  ++ +
Sbjct: 1169 TVEEDKYRRTAWKEWVSRMIFS 1190


>gi|303312659|ref|XP_003066341.1| Helicase conserved C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106003|gb|EER24196.1| Helicase conserved C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 458

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+E+  +  I +L +   + G GL+L       +   LWW+    QQ   R+      
Sbjct: 329 RDIEEFRTDPSIRVLISSLKAGGTGLSLTM-AEKCILIDLWWNEAMEQQAFCRLF----- 382

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + G K+ V +  +  +N+ID+ +      KS+
Sbjct: 383 RYGQKKEVEIVRITVKNSIDDRIQLIQNAKSS 414


>gi|30387275|ref|NP_848354.1| global transactivator [Choristoneura fumiferana MNPV]
 gi|4097928|gb|AAD10317.1| global transactivator [Choristoneura fumiferana MNPV]
          Length = 497

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 33/195 (16%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHD------------EKIKALEVIIEKANAAPIIVAY 75
              +  Q+            +KE                 ++ ++ +++  +   ++V  
Sbjct: 295 LLCRLRQMCCHPALTKCSAMFKEHARIFEPAYESSKCRRVLELVQGVLDTMDDKVVLV-S 353

Query: 76  HFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK--IPLLFAHPASCGHGL 123
            +   L  +     Q             +++      ++N       +L       G GL
Sbjct: 354 QWVEFLQLVAGLLRQRGVPVLLYTGTLRVEERTAVENQFNAADSRYRVLLMSIKCGGVGL 413

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVL 181
           NL  G N ++     W+ +   Q  +RI      + G K+  FVY ++   +N+I+  + 
Sbjct: 414 NLTGG-NHIIMLEPHWNPQIELQAQDRI-----HRMGQKKRTFVYKMLVDEENSIERYMK 467

Query: 182 QRLRTKSTIQDLLLN 196
            R   K T  + + +
Sbjct: 468 ARQDKKLTFVNKVFD 482


>gi|149184885|ref|ZP_01863202.1| hypothetical protein ED21_17567 [Erythrobacter sp. SD-21]
 gi|148830996|gb|EDL49430.1| hypothetical protein ED21_17567 [Erythrobacter sp. SD-21]
          Length = 1270

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           K    +  +        +L   P + G GL +    N ++  S WW+     Q  +R   
Sbjct: 856 KRQEMVTAFQSSPASFDVLILSPKAGGVGLTIT-AANNVIHLSRWWNPAVEDQATDR--- 911

Query: 154 TRQRQAGFKRAVFVY--------YLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G  R V ++          I  ++ D+ +   +  K ++   LL
Sbjct: 912 --AYRIGQTRPVTIHIPMAVHPDEAIGPSSFDQRLDALMERKRSLSRGLL 959


>gi|121582847|ref|YP_973289.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
 gi|120596109|gb|ABM39547.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
          Length = 1259

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 27/154 (17%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------------PCTIQEWNE-G 107
            ++     I+   F +    LQ    +   L  D                   I+ +    
Sbjct: 935  QSQGEKAIIFCEFRNIQRLLQHYIEEVFALQADIINGDTSASASHSASRQKRIKAFQAKP 994

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               ++   P + G G+N+Q   N +V ++  W+  +  Q  +R       + G  R V+V
Sbjct: 995  GFGVIILSPVAVGFGVNIQ-AANHVVHYTRTWNPAKEDQASDRAW-----RIGQTRDVYV 1048

Query: 168  YYLI--AQN--TIDELVLQRLRTKSTIQDLLLNA 197
            Y  +  AQ+  T D  + Q L  K ++   +LN 
Sbjct: 1049 YCPVVAAQDFTTFDVKLDQLLERKRSLAGDMLNG 1082


>gi|218189914|gb|EEC72341.1| hypothetical protein OsI_05562 [Oryza sativa Indica Group]
          Length = 2184

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 28/167 (16%)

Query: 28   KTVKCLQL---ANGAVYYDE-----EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHF 77
               KC++L    N  +          K +      K+  L+ I+ K +     +++    
Sbjct: 1259 LNNKCMELRKVCNHPLLSYPFMNYYGKDFIIRSCGKLWNLDRILIKLHRSGHRVLLFSTM 1318

Query: 78   NSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNL 125
               L  L+          +      +L+     I ++N       +      + G GLNL
Sbjct: 1319 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNL 1378

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            Q   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1379 Q-SADTVVIYDPDPNPQNEEQAVAR-----AHRIGQTRDVKVIYMEA 1419


>gi|145498258|ref|XP_001435117.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402246|emb|CAK67720.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1210

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 43   DEEKHWKEVHDEKIKAL--EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------ 94
            ++ K  K     K++A+  +  I +     +++       +  +   F +   +      
Sbjct: 1031 EDLKTLKFGLSSKLEAILNKTKIVQQQKEKVLIFTQSVDMIQLIDNLFQENGIVAFRITG 1090

Query: 95   ----DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +K    I+++ E +  + L     +   GLNL    N +     WW+     Q I 
Sbjct: 1091 QMSVEKREKVIKQFKESQDAIALLLSLRATSTGLNLTMANN-VFLVDPWWNPAIEDQAIG 1149

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            R       + G +  V V   + +NTI++ +    + K 
Sbjct: 1150 R-----ADRIGQQNQVKVVRFLCRNTIEQSINLLHQKKK 1183


>gi|256073537|ref|XP_002573086.1| harp (smarcal1)-related [Schistosoma mansoni]
 gi|238658258|emb|CAZ29318.1| harp (smarcal1)-related [Schistosoma mansoni]
          Length = 695

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 49  KEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
            E    K+ A+E     +IE       ++  H    L  L K   +         GRT  
Sbjct: 460 HETGSVKLPAIEQYVLDLIEC--GHKFLLFAHHTDVLDSLDKLLSEKSIRFIRIDGRTNS 517

Query: 96  KDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +      E    +      + G GL+L    N+++F  L+W+     Q  +R   
Sbjct: 518 EQRSVVCQIFQKEDDCRVALLSITAAGTGLHLT-AANLVIFAELFWNPGALVQAEDR--- 573

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G   +V + YLIA+ T D+ +   +  K  +
Sbjct: 574 --AYRIGQMDSVLIRYLIAEQTADDFIWPLVERKLDV 608


>gi|325115083|emb|CBZ50639.1| aar147wp, related [Neospora caninum Liverpool]
          Length = 1866

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            D   +Q    G+  +L     +   GLNL    +       WW+ +   Q ++RI     
Sbjct: 1617 DGRALQRQPGGEGRILLCSLKAGNVGLNLTR-ASRCYLMDGWWNPQVENQAMKRIW---- 1671

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + G  + V V   +   T++E + +    K
Sbjct: 1672 -RFGQDKPVKVVRFVCVRTVEERLEEIKEFK 1701


>gi|299531998|ref|ZP_07045397.1| helicase, putative [Comamonas testosteroni S44]
 gi|298720034|gb|EFI60992.1| helicase, putative [Comamonas testosteroni S44]
          Length = 188

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +              +L   P + G G+N+Q   N +V ++  W+  +  Q  +R     
Sbjct: 29  RQKRIKAFQEAPGFGVLVLSPVAVGFGVNIQ-AANHVVHYTRTWNPAKEDQATDR----- 82

Query: 156 QRQAGFKRAVFVYYLI--AQN--TIDELVLQRLRTKSTIQDLLLNA 197
             ++G K+ V+VYY +  A++  T D  + + L  K  + + +LN 
Sbjct: 83  AYRSGQKKDVYVYYPVVWAEDFTTFDVKLDRLLTYKRGLAEDMLNG 128


>gi|207343185|gb|EDZ70726.1| YLR032Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1126

 Score = 70.4 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 23/135 (17%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDP 98
               +K L+++ + +    +++   F++ L  L+K               F    +L +  
Sbjct: 998  TALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERT 1057

Query: 99   CTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + ++         +L     + G GLNL    +  +    WW      Q I+R+    
Sbjct: 1058 SVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMM-DPWWSPSMEDQAIDRL---- 1112

Query: 156  QRQAGFKRAVFVYYL 170
              + G   +V V   
Sbjct: 1113 -HRIGQTNSVKVMRF 1126


>gi|56964261|ref|YP_175992.1| DNA/RNA helicase [Bacillus clausii KSM-K16]
 gi|56910504|dbj|BAD65031.1| SNF2 family DNA/RNA helicase [Bacillus clausii KSM-K16]
          Length = 559

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 16/197 (8%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            +REL    +   +   N   K  +  +   GA+     +        K +    +I+K 
Sbjct: 307 LKRELCSSREAVFVTLKNMIDKYEQ-EEKETGAIVELLNEATAVDGHAKAEKALELIQKI 365

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNEG---KIPLLFAHPAS 118
           +   +I+   + +    LQ    Q                ++W      K   +     +
Sbjct: 366 DDK-VIIFTEYRATQLYLQWFLKQHGITSVPFRGGFKRGKKDWMRELFQKHAQVLIATEA 424

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NLQ+  + ++ + L W+    +Q I R+      + G +  V +Y    Q+T+++
Sbjct: 425 GGEGINLQF-CHHIINYDLPWNPMRVEQRIGRL-----HRLGQEHDVRIYNFAVQHTVEQ 478

Query: 179 LVLQRLRTKSTIQDLLL 195
            +L+ L  K  + + ++
Sbjct: 479 HILELLYEKIHLFESVI 495


>gi|328848699|gb|EGF97901.1| hypothetical protein MELLADRAFT_84173 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +  PQ R L       +  N   I        + G GLN+    + +      W+ +  Q
Sbjct: 85  EMTPQERIL----QLNRFQNNNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNSQIVQ 139

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           Q I+R+      Q G    V VY+++A  ++++ +
Sbjct: 140 QAIDRL-----HQIGQTHPVKVYHVVAGGSVEQHL 169


>gi|319945477|ref|ZP_08019737.1| helicase [Lautropia mirabilis ATCC 51599]
 gi|319741263|gb|EFV93690.1| helicase [Lautropia mirabilis ATCC 51599]
          Length = 1109

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 92   RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            R +D     I+ + E     +L   P + G G+N+Q   N +V +   W+  +  Q  +R
Sbjct: 984  RNVDSRQKRIRAFQEKPGFGVLILSPVAVGFGVNIQ-AANHVVHYMRTWNPAKEDQATDR 1042

Query: 151  IGVTRQRQAGFKRAVFVYY-LIAQN---TIDELVLQRLRTKSTIQDLLLNA 197
                   + G  + V VYY  +A +   T D  + Q L  K  +   +LN 
Sbjct: 1043 -----AYRIGQTKDVHVYYPTVAADDFVTFDVRLDQLLTKKRELAGDMLNG 1088


>gi|224165209|ref|XP_002338786.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
 gi|222873460|gb|EEF10591.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
          Length = 101

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P L A+    G G+NL    + +     WW+ E  +Q I+R+      Q G ++ V +  
Sbjct: 13  PTLLANVKVSGAGINLT-AASEVYLMEPWWNSEFEEQAIDRV-----HQYGQEKNVIIVR 66

Query: 170 LIAQNTIDELVLQRLRTKS 188
           LI Q++I+E +L     K 
Sbjct: 67  LIVQDSIEERILMMQERKK 85


>gi|74217178|dbj|BAC34934.2| unnamed protein product [Mus musculus]
          Length = 445

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL    ++++ +   W+ +   Q ++R       + G  + V V+  I  NT++E ++
Sbjct: 2   GINL-ATADVVILYDSDWNPQVDLQAMDR-----AHRIGQTKTVRVFRFITDNTVEERIV 55

Query: 182 QRLRTKSTIQDLLLN 196
           +R   K  +  +++ 
Sbjct: 56  ERAEMKLRLDSIVIQ 70


>gi|240103680|ref|YP_002959989.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
 gi|239911234|gb|ACS34125.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
          Length = 1100

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 30/165 (18%)

Query: 53  DEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTL 94
           + K+K L   +     E      I++   F   L  L     +               T 
Sbjct: 465 ETKLKKLRETLDFIAREHGEKEKILIFTEFKDTLEYLVNKLQEWGYTVTFIHGEMDMETR 524

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +     +EW +     +     + G G+NLQ+  ++L+ + + W+    +Q I R+   
Sbjct: 525 LQREKDFREWAQ-----VMVATEAAGEGINLQF-CHLLINYDIPWNPNRLEQRIGRV--- 575

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNAL 198
              + G +  V ++  +A+NT + +VL+RL  K   I+  L + +
Sbjct: 576 --HRYGQRYPVHIFNFVARNTREGMVLERLLHKIEEIRKALGDKV 618


>gi|41052581|dbj|BAD07923.1| SNF2 domain/helicase domain-containing protein-like [Oryza sativa
            Japonica Group]
 gi|41052776|dbj|BAD07645.1| SNF2 domain/helicase domain-containing protein-like [Oryza sativa
            Japonica Group]
 gi|222622037|gb|EEE56169.1| hypothetical protein OsJ_05089 [Oryza sativa Japonica Group]
          Length = 2200

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 28/167 (16%)

Query: 28   KTVKCLQL---ANGAVYYDE-----EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHF 77
               KC++L    N  +          K +      K+  L+ I+ K +     +++    
Sbjct: 1259 LNNKCMELRKVCNHPLLSYPFMNYYGKDFIIRSCGKLWNLDRILIKLHRSGHRVLLFSTM 1318

Query: 78   NSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNL 125
               L  L+          +      +L+     I ++N       +      + G GLNL
Sbjct: 1319 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNL 1378

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            Q   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1379 Q-SADTVVIYDPDPNPQNEEQAVAR-----AHRIGQTRDVKVIYMEA 1419


>gi|77164180|ref|YP_342705.1| DEAD/DEAH family helicase [Nitrosococcus oceani ATCC 19707]
 gi|254436075|ref|ZP_05049582.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882494|gb|ABA57175.1| helicase, DEAD/DEAH box family [Nitrosococcus oceani ATCC 19707]
 gi|207089186|gb|EDZ66458.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 760

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 75/206 (36%), Gaps = 28/206 (13%)

Query: 8   QRELYCDLQGENIEAFN------SASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALE 60
           + ELY D   +   A        +    +K L+  A G V    +K W+E+        E
Sbjct: 24  EYELYADQVVDQATAAETIPELEAEILILKDLEHQALGVVQSGNDKKWEELSHLLQDRPE 83

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEW-NE 106
           +  E  +   +I+       L  L                   G   D      +E+ N 
Sbjct: 84  MYTESGSRRKLIIFTEHKDTLNYLVGRIRGMLGNPEAVITIHGGVNRDDRRKAQEEFRNN 143

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A   + G G+NLQ   N++V + L W+    +Q   RI      + G      
Sbjct: 144 RDVQVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCH 196

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           ++ LIA  T +  V QRL  K  I+ 
Sbjct: 197 LWNLIASETREGEVFQRLFDKIEIEK 222


>gi|242209777|ref|XP_002470734.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730204|gb|EED84065.1| predicted protein [Postia placenta Mad-698-R]
          Length = 998

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +  D+ P   +   +  + +      + G GLNL  G N +V F          Q I+R 
Sbjct: 668 KAQDRMPLIDKFHEDPDVFVFLISTMAGGTGLNLT-GANKVVIFDP----AHDLQAIDR- 721

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                 + G  R V V+ L+   +I+EL+  R   K 
Sbjct: 722 ----AYRFGQTRDVSVFRLLGAGSIEELIYARQVYKQ 754


>gi|281337653|gb|EFB13237.1| hypothetical protein PANDA_009544 [Ailuropoda melanoleuca]
          Length = 1008

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + +             
Sbjct: 256 KQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSS 315

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 316 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATH-VVFAELYWDPGHIKQAEDR---- 370

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G   +V ++YL+A  T+D L+   L  K+ +    LN  K++
Sbjct: 371 -AHRIGQCTSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQ 416


>gi|254478047|ref|ZP_05091431.1| Type III restriction enzyme, res subunit family [Carboxydibrachium
           pacificum DSM 12653]
 gi|214036051|gb|EEB76741.1| Type III restriction enzyme, res subunit family [Carboxydibrachium
           pacificum DSM 12653]
          Length = 881

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 24/157 (15%)

Query: 49  KEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGR----------TL 94
           ++  D K+  L  ++ K     +    ++   F +    L++   +             +
Sbjct: 446 RQFFDVKLDTLFDLLFKVRLGESDVKFLIFTEFRATQDYLREMLQKRGYKVVVLNGSMDI 505

Query: 95  DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++E+ E   I +      + G GLNLQ+  +I++ + + W+  + +Q I R+  
Sbjct: 506 GERKAALKEFEEAADIMV---STDAGGEGLNLQF-CHIVINYDMPWNPMKIEQRIGRVD- 560

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G  + VFV+  I + TI+  V + L  K  +
Sbjct: 561 ----RIGQTKDVFVFNFILEETIENRVRKVLEEKLEV 593


>gi|194752217|ref|XP_001958419.1| GF23531 [Drosophila ananassae]
 gi|190625701|gb|EDV41225.1| GF23531 [Drosophila ananassae]
          Length = 1272

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 15/191 (7%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               ++     +    I   +S        + +  A+  D       + ++ +K    I  
Sbjct: 1065 ENMKKSTLHGISKCPICRQDSPQLYYSVRRESGIAIAGDFSTKISNIVEQVLK----IRS 1120

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPL--LFAHPASC 119
                  I++   + + L ++ KA        +         ++    + +  L    +  
Sbjct: 1121 ANADEKILIFSQWQAILFQISKALALNNVKFRSKCIEQDFADFKNPDLNITCLLMPLSKG 1180

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    + +       +  + +Q I RI      + G  +   V+  I   TI+E 
Sbjct: 1181 SKGLNLIEATH-VFLVEPILNPGDEKQAIGRI-----HRFGQTKPTKVHRFIVNGTIEEN 1234

Query: 180  VLQRLRTKSTI 190
            +L  + +    
Sbjct: 1235 ILSLITSADDT 1245


>gi|328849920|gb|EGF99092.1| hypothetical protein MELLADRAFT_94926 [Melampsora larici-populina
           98AG31]
          Length = 203

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +  PQ RTL       +  N   I        + G GLN+    + +      W+ +  Q
Sbjct: 85  EMTPQERTL----QLNRFQNNNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQ 139

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           Q I+ +      Q G    V VY+++A  ++++ +
Sbjct: 140 QAIDHL-----HQIGQTHPVKVYHVVAGGSVEQHL 169


>gi|242819355|ref|XP_002487301.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713766|gb|EED13190.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1114

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEW-NEGKIPLLFAHPASC 119
            ++   + S L  ++ A                 L      +  +  +  I +L A   + 
Sbjct: 962  VIFSGWTSHLDLIEIALKDHGLNGFTRIDGTMSLAARKAALNSFAEDKDITILLATIGAG 1021

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL     + +     ++     Q ++R+      + G  R V     I + +I+E 
Sbjct: 1022 GVGLNLTSASRVYIM-EPQYNPAAVAQAVDRV-----HRLGQTREVTTVQFIMKASIEEK 1075

Query: 180  VLQRLRTKSTIQDLLLNALKKETIHV 205
            + +  + K  + +  +   K +   V
Sbjct: 1076 IFEMAKKKQQLAEDSMARGKLDKREV 1101


>gi|118396328|ref|XP_001030505.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89284810|gb|EAR82842.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 908

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKDPC 99
            K+  L+  I+    N   IIV  H N  L +L+                +    ++   
Sbjct: 207 AKLHELKNYIKDLLENDIKIIVFAHHNEMLNQLENFVQNELQLKFIRIDGKVAPKERHER 266

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             Q   + ++ +      +   GL L    NI VF  + W     QQ  +R       + 
Sbjct: 267 VQQFQTDPQVKVAILSLLAASTGLTLTASSNI-VFAEMNWTPAIMQQAEDR-----AHRI 320

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G + +V  +Y++ + T+D+L+ +++  K  I   +L+ 
Sbjct: 321 GQENSVLCHYILGEKTLDDLLYKKIEQKIAIVSNILDG 358


>gi|145481069|ref|XP_001426557.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393632|emb|CAK59159.1| unnamed protein product [Paramecium tetraurelia]
          Length = 746

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTI 101
            KIKA++  I     N    +   H    L  +Q+                ++++    +
Sbjct: 405 AKIKAIKDYINTLFENEIKFLFFAHHQDVLDAVQEYCVENNIQYMRIDGSVSIEQRHLNV 464

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           Q +   + I +      S  +G+ L    + +VF  + W      Q  +R       + G
Sbjct: 465 QMFQNNEAIRIAILSVTSANYGITLT-AASTIVFGEMHWTPAIMMQAEDR-----AHRIG 518

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V  +YLI   T+D+ +  ++  K       ++  K
Sbjct: 519 QVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFIDGQK 557


>gi|260948488|ref|XP_002618541.1| hypothetical protein CLUG_02000 [Clavispora lusitaniae ATCC 42720]
 gi|238848413|gb|EEQ37877.1| hypothetical protein CLUG_02000 [Clavispora lusitaniae ATCC 42720]
          Length = 980

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)

Query: 47  HWKEVHDEKIKALEV-IIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT----------L 94
                   K+  L   ++E +      IV + F      L ++                 
Sbjct: 707 QILGTASAKLSYLSSRLVEHQLEGVKSIVFFEFEDSAYYLAESLDILGVNYILYATFVGA 766

Query: 95  DKDPCTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +    + ++++  +       L        HGL +      + F S  W      Q I+
Sbjct: 767 GQRANNLSDFDDHDVEKNGGITLIMDLRLAAHGLTI-ISATRVYFTSPVWSRSVEAQAIK 825

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R       + G K  VFV  L+ + T++E + +R +T +     +++ LK +
Sbjct: 826 R-----AHRIGQKNEVFVETLVLKGTLEEEIYKRRQTDNAADSSVVDDLKMQ 872


>gi|320033549|gb|EFW15496.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 1107

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+E+  +  I +L +   + G GL+L       +   LWW+    QQ   R+      
Sbjct: 978  RDIEEFRTDPSIRVLISSLKAGGTGLSLTM-AEKCILIDLWWNEAMEQQAFCRLF----- 1031

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + G K+ V +  +  +N+ID+ +      KS+
Sbjct: 1032 RYGQKKEVEIVRITVKNSIDDRIQLIQNAKSS 1063


>gi|302853578|ref|XP_002958303.1| hypothetical protein VOLCADRAFT_48099 [Volvox carteri f.
           nagariensis]
 gi|300256328|gb|EFJ40596.1| hypothetical protein VOLCADRAFT_48099 [Volvox carteri f.
           nagariensis]
          Length = 77

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G NL     +++ F L W+   + Q I RI      + G  R  FVY L+ 
Sbjct: 2   LVSSKAGSLGTNLTSACRMVI-FDLPWNPVFNAQAIARI-----YRFGQTRPTFVYRLLY 55

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
             T++ELV      K  + + +
Sbjct: 56  AATLEELVYDLNVDKEELFNKV 77


>gi|163731714|ref|ZP_02139161.1| hypothetical protein RLO149_20459 [Roseobacter litoralis Och 149]
 gi|161395168|gb|EDQ19490.1| hypothetical protein RLO149_20459 [Roseobacter litoralis Och 149]
          Length = 915

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 24/137 (17%)

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVA-------YHFNSDLAR---LQKAFPQGRTLDKD 97
                +  A+  I+   K+     +V          F   L     L      G T   D
Sbjct: 633 VGASARTSAVMDILRFVKSKGERALVFVENRDIQAWFIEILNLEFGLNVMLINGDTSIDD 692

Query: 98  PCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              I +       ++ +  +L   P + G GL L    N ++  + WW+    +Q  +R 
Sbjct: 693 RQWITKQFQRERGDDNEFDVLVLGPRAAGTGLTLT-AANHVIHLTRWWNPAVEEQCNDR- 750

Query: 152 GVTRQRQAGFKRAVFVY 168
                 + G  R V V+
Sbjct: 751 ----THRIGQTRPVTVH 763


>gi|169597871|ref|XP_001792359.1| hypothetical protein SNOG_01727 [Phaeosphaeria nodorum SN15]
 gi|111070256|gb|EAT91376.1| hypothetical protein SNOG_01727 [Phaeosphaeria nodorum SN15]
          Length = 861

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 25/186 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWK----EVHDEKIKALEVIIEKA 66
             ++  N  A   ++K +  L+  L       D  +++      V     + L++I    
Sbjct: 685 VTMRDNNGNASRYSAKVLALLRNLLTAHTPINDINENYIPAKSVVFSHSTRMLDLI---- 740

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNL 125
              P +  Y F               +L+     ++E+  +    ++ A   S G GL+L
Sbjct: 741 --QPALSHYQFR------TCRIDGSTSLEGRSNVLREFSEDAHCAVMLATIGSAGEGLDL 792

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               ++ +     W+     Q ++RI      + G KR VFV   I   +I+  +    +
Sbjct: 793 TAANHVHI-IEPHWNPMAEAQAVDRI-----YRIGQKREVFVTRYIVPKSIETYIQWVQQ 846

Query: 186 TKSTIQ 191
            K  +Q
Sbjct: 847 QKLKLQ 852


>gi|147789690|emb|CAN74059.1| hypothetical protein VITISV_024679 [Vitis vinifera]
          Length = 2238

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1280 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFST 1339

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N       +      + G GLN
Sbjct: 1340 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLN 1399

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1400 LQ-SADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYMEA 1441


>gi|29567040|ref|NP_818603.1| gp65 [Mycobacterium phage Barnyard]
 gi|29425765|gb|AAN02119.1| gp65 [Mycobacterium phage Barnyard]
          Length = 653

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 27/197 (13%)

Query: 2   KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           KQY +  ++    L+      + +    S ++ V+  Q+A  A+  D +    E+   KI
Sbjct: 430 KQYDQILKDAVITLESLAGEKDEVVVNGSLAEMVRLKQVAGSALGLDVK---PELPSNKI 486

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTI--QE 103
           + ++  + +  +     +VA  F   L           ++     G+T+  +   I  + 
Sbjct: 487 EWIKNFLSERISAGTKTVVASQFTQFLELLSRECDKAGIRHYLYTGKTVGSERARIKHEF 546

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +E    ++  +  S G  L L    +++V     W  ++ +Q +E     R+R      
Sbjct: 547 QSESGEMVVLLNTKSGGLSLTLDAADDVVV-CDQTWIPDDQEQ-VENRAYGRER----DH 600

Query: 164 AVFVYYLIAQNTIDELV 180
            V ++ L +  TIDE +
Sbjct: 601 NVNIWNLCSLGTIDEDI 617


>gi|26350683|dbj|BAC38978.1| unnamed protein product [Mus musculus]
          Length = 1069

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDR---- 430

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     +V ++YLIA  T+D L+   L  K+ +    LN  K++
Sbjct: 431 -AHRIRQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEK 476


>gi|225454280|ref|XP_002276245.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2268

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 27   SKTVKCLQL---ANGAV----YYDEEKHWKEVHDE-KIKALEVIIEKAN--AAPIIVAYH 76
            +   +C++L    N  +    Y+++      V    K+  L+ I+ K       +++   
Sbjct: 1310 TLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFST 1369

Query: 77   FNSDLA---------RLQKAFPQGRT-LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLN 124
                L          RL      G T L+     I ++N       +      + G GLN
Sbjct: 1370 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLN 1429

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + +V +    + +  +Q + R       + G  R V V Y+ A
Sbjct: 1430 LQ-SADTVVIYDPDPNPKNEEQAVAR-----AHRIGQTREVKVIYMEA 1471


>gi|49387874|dbj|BAD26561.1| SNF2 domain-containing protein-like [Oryza sativa Japonica Group]
          Length = 602

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 24/152 (15%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTL---------DKDPCTIQEWNE 106
           + E      ++V   +   L+ +         + +G  +               ++ +N+
Sbjct: 417 LCEAMKER-VLVFSQYLEPLSLIMDQLSKMFNWIEGEEILLMSGNVLVQNREALMEAFND 475

Query: 107 --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 ++ A   +C  G+ L  G + +V   + W+       + R  + R  + G ++ 
Sbjct: 476 MKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIGRAYRIGQEKI 529

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ Y LI + T ++    R   K  +  LL +
Sbjct: 530 VYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 561


>gi|123477453|ref|XP_001321894.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121904729|gb|EAY09671.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1354

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 26  ASKTVKCLQLANGAVYYDE-------EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            S+     QL+   V+  +       + H   +  +K++ L ++ E      ++  Y+  
Sbjct: 631 LSRLELLTQLSTKFVWLSKVLAELKRDNHKVLIFSQKVQLLHILREFC----MLSQYNNE 686

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             +  +     +   +D+   +   +      +      +   GLNL    +  + F   
Sbjct: 687 LLIGEMSD-IEKSEAIDRYSKSPDSF------VFLISTRAGSEGLNLTV-ADTAIIFDPD 738

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           W+ +   Q   R+      + G  + V V  LI   T +  +  R + K
Sbjct: 739 WNPQNDLQAQARV-----HRIGQTQKVDVVRLITYQTYEHEMFVRAQRK 782


>gi|294889866|ref|XP_002772973.1| hypothetical protein Pmar_PMAR009695 [Perkinsus marinus ATCC 50983]
 gi|239877632|gb|EER04789.1| hypothetical protein Pmar_PMAR009695 [Perkinsus marinus ATCC 50983]
          Length = 247

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G + ++F+   W+    +Q ++R       + G  R V ++ L++ +TI+E +  +   
Sbjct: 17  SGADCVIFYDSDWNPAMDRQAMDRC-----HRIGQTRDVHIFRLLSHHTIEENIFHKQLQ 71

Query: 187 KSTIQDLLLN 196
           K  + D++++
Sbjct: 72  KRMLDDVVVD 81


>gi|303389620|ref|XP_003073042.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302186|gb|ADM11682.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 556

 Score = 70.0 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 28/202 (13%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           KF+R++    +G+  +            +L    V  +    ++E    KI  ++  I  
Sbjct: 342 KFRRQVVLQCKGKQRDPAK---------ELVGENVDTNVVAQYREAVKLKIDQVKQYIST 392

Query: 66  --ANAAPIIVAYHFNSDLARLQKAF-PQGRTL----------DKDPCTIQEWNEGKIPLL 112
                   I+  H    +  L++    +G ++          ++           +I   
Sbjct: 393 IVEKDMKFIIFCHHVEMMDGLEEFLREKGVSIIRIDGSTPSSNRHMLVKSFQENEEIKTA 452

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +C  GL L   G  +VF  L+W+     Q  +RI      + G K +V + YL+A
Sbjct: 453 LLSITACSTGLTLT-AGRAVVFAELYWNPGVLLQAEDRI-----HRIGQKNSVDIIYLVA 506

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           + TIDE V  +L +K  + + L
Sbjct: 507 RGTIDEYVWPKLLSKLNVLESL 528


>gi|242042115|ref|XP_002468452.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
 gi|241922306|gb|EER95450.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
          Length = 976

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR---------------TLDKDPCTIQEWNE- 106
           + +A    ++V   +   L  L+  F + +               T ++    I+ +N  
Sbjct: 776 LSEAAGEKVLVFSQYVRSLHFLETLFTKMKGWKPGVNTFLMDGSSTQEQREQAIERFNNS 835

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K  + F    +CG G++L     I++              + R  + R  + G  + V+
Sbjct: 836 PKAKVFFGSIKACGEGISLVGASRIVILD------VHENPAVMRQAIGRAFRPGQSKVVY 889

Query: 167 VYYLIAQNTIDE 178
            Y L+A  + +E
Sbjct: 890 CYRLVASGSSEE 901


>gi|28493085|ref|NP_787246.1| DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476125|gb|AAO44215.1| DNA helicase [Tropheryma whipplei str. Twist]
          Length = 698

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T +     ++ +  +    +      + G G+NLQ   N +V   L W   E  Q I+R
Sbjct: 566 QTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASN-VVLSELSWTAAEQGQAIDR 624

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-----LKKETIHV 205
           +      + G    V  + ++   T+D  +   + +KS    L L+      +++E++H+
Sbjct: 625 L-----HRIGQTEPVTAWRILGAGTVDIRMAALVDSKSNDAILSLDGGDMREVQQESLHI 679


>gi|156089377|ref|XP_001612095.1| helicase  [Babesia bovis T2Bo]
 gi|154799349|gb|EDO08527.1| helicase conserved C-terminal domain containing protein [Babesia
           bovis]
          Length = 879

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFP---------QGRT--LDKDPCTIQEWNEGKIPLLFAHPAS 118
             I+  H    +  +++             G T    ++    +  N  K  +      +
Sbjct: 716 KFIIFAHHMFMMDAIEQVLKAQHCCYMRIDGSTNAQQRESRVTEFQNNSKCRVALLSLTA 775

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTID 177
           CG GLNL    + +VF  L W   +  Q  +R       + G K  +  ++YLIA+ +I+
Sbjct: 776 CGVGLNLT-SSSTVVFAELHWVPGQMIQAEDR-----AHRMGTKHRIINIHYLIAEGSIE 829

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E + + +  K       LN 
Sbjct: 830 ETMWRVVSRKWETVTATLNG 849


>gi|302765060|ref|XP_002965951.1| hypothetical protein SELMODRAFT_60241 [Selaginella moellendorffii]
 gi|300166765|gb|EFJ33371.1| hypothetical protein SELMODRAFT_60241 [Selaginella moellendorffii]
          Length = 1108

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 28/169 (16%)

Query: 26  ASKTVKCLQL--ANGAVYYDEEKHWKEVHDE------KIKALEVIIEKAN--AAPIIVAY 75
           A    KC++L       Y +   H +  ++       K+  L+ I+ K       +++  
Sbjct: 315 APLQNKCMELRKVCNHPYLNYPPHCRLFNENMVRMCGKLWILDRILIKLQRSGHRVLLFS 374

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGL 123
                L  L+          +       LD     I ++N    +  +      + G GL
Sbjct: 375 TMTKLLDILEDYLQWRGLIYRRIDGTTPLDSRETAIVDFNAPGSQCFIFLLSIRAAGRGL 434

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           NLQ   + +V +    + +  +Q + R       + G K  V V Y+ A
Sbjct: 435 NLQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQKSEVKVIYMEA 477


>gi|126337900|ref|XP_001367889.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1
           [Monodelphis domestica]
          Length = 965

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 28/200 (14%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----KEVHDEKI----KA 58
           QR++   +    + A   AS      ++A       ++K           + KI      
Sbjct: 675 QRKMVV-VALGQMSAKTRASLAAAAKEMATEKTSRRQQKEALLLFFHRTAEAKIQPATDY 733

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWN-EG 107
           +  ++E      ++V  H    L  L     +         G T   D  T+ Q++    
Sbjct: 734 ILDLLES-GREKLLVFAHHKLVLDALSDELEKKHIGYIRIDGATSSSDRQTLCQQFQLSE 792

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K  +      +   GL      +++VF  L+W+     Q  +R+      + G   +V +
Sbjct: 793 KCAVAVLSITAANMGLTF-SATDLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVTI 846

Query: 168 YYLIAQNTIDELVLQRLRTK 187
           +YL+A+ T D+ +   ++ K
Sbjct: 847 HYLVARGTADDYLWPLIQEK 866


>gi|329849600|ref|ZP_08264446.1| SNF2 family N-terminal domain protein [Asticcacaulis biprosthecum
           C19]
 gi|328841511|gb|EGF91081.1| SNF2 family N-terminal domain protein [Asticcacaulis biprosthecum
           C19]
          Length = 1164

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 20/126 (15%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +R+    P      K    ++ +        ++   P + G GL L    N ++  S WW
Sbjct: 769 SRIHGGVPGA----KRQDLVEVFQARADCFDVMILSPKAGGVGLTLT-AANHVIHLSRWW 823

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVY--------YLIAQNTIDELVLQRLRTKSTIQ 191
           +     Q  +R+      + G  R V VY         +I  ++ D  +   L  K  + 
Sbjct: 824 NPAVEDQSTDRV-----YRIGQTRPVQVYLPMAVHPDPVIGPSSFDIKLNDLLSRKRALS 878

Query: 192 DLLLNA 197
             +L A
Sbjct: 879 RDMLVA 884


>gi|222476088|ref|YP_002564609.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454459|gb|ACM58723.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 969

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 18/141 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE-WNE 106
           ++ ++E+     I++   +   L  +                 G    +D   I++ +N 
Sbjct: 473 IQQLLEEQPNEKILLFTEYRDTLDYILDLVKDEPWADEILVIHGGVDKEDRTRIEDEFNH 532

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  LLFA  A+   G++LQ+  +I+V + L W+    +Q I R+      + G ++ V 
Sbjct: 533 GQSRLLFATDAAS-EGIDLQHSCHIMVNYELPWNPNRLEQRIGRL-----HRYGQEKEVT 586

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V+    ++T +  V + L+ K
Sbjct: 587 VWNFSFEDTRESKVFEMLQDK 607


>gi|190352249|gb|ACE76520.1| SNF2H-like protein [Sus scrofa]
          Length = 239

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 40/196 (20%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL--ANGAVYYDEEKHW- 48
           +K Y    K QRE Y  +  ++I+  NSA K  K       +QL       Y  +     
Sbjct: 50  VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 109

Query: 49  --------KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFP 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 110 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 169

Query: 90  QGRTL-DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G+T  D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 170 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 228

Query: 147 MIERIGVTRQRQAGFK 162
            ++R       + G  
Sbjct: 229 AMDR-----AHRIGQT 239


>gi|322492113|emb|CBZ27387.1| putative DNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1087

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 27/167 (16%)

Query: 51  VHDEKIKALEV----IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
               KI A++     I+E+   +   +I+  H    +  L+ A    R            
Sbjct: 451 TARAKIPAVQDYVSGIVEQHLDSGEKLILFAHHQCMMEALRSAVEVVRPRQPIDYIYISG 510

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++P       E    +      S G G N     + +VF  L W+   H Q  +
Sbjct: 511 DTPPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFTC-ASTVVFTELDWNPSTHLQCED 569

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G      + YL+A+ T D ++   L+TK ++   +  
Sbjct: 570 RV-----HRIGQAHPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 611


>gi|260814660|ref|XP_002602032.1| hypothetical protein BRAFLDRAFT_82621 [Branchiostoma floridae]
 gi|229287337|gb|EEN58044.1| hypothetical protein BRAFLDRAFT_82621 [Branchiostoma floridae]
          Length = 2045

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 57/184 (30%), Gaps = 55/184 (29%)

Query: 52   HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               K+  L+ ++ +       +++       L  L +               Q++     
Sbjct: 918  SSGKLFLLDKLLVRLRDTGHRVLIFSQMVRMLDILAEYLTM------RHFPFQDF----- 966

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR------ 163
                    + G G+NL    + ++ F   W+ +   Q       +R  + G ++      
Sbjct: 967  -CFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDIQA-----QSRAHRIGQRKQVCTST 1019

Query: 164  -----------------------------AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                                          V +Y L+ + +++E +++R + K  +  L+
Sbjct: 1020 PFNKEELSAILKFGAEELFKENEGEEEEMPVNIYRLVTKGSVEEDIIERAKKKMVLDHLV 1079

Query: 195  LNAL 198
            +  +
Sbjct: 1080 IQRM 1083


>gi|257484420|ref|ZP_05638461.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 54

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             WW+     Q  +R       + G  + VFVY +IA+ T++E + +  R KS +   +
Sbjct: 1   DPWWNPAAENQATDR-----AYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGV 54


>gi|291164804|gb|ADD80834.1| helicase [Rhodococcus phage ReqiDocB7]
          Length = 500

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 36/222 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-AL 59
           K Y +   EL  D    + +A  N  +K ++  Q+        E+         K+  A 
Sbjct: 264 KLYDQVATELLLDTGSGDPDAIENPMTKFLRLKQICGTTASVREDG---LDKSAKLDLAT 320

Query: 60  EVIIE-KANAAPIIVAYHFNSDL----ARLQKAFPQGRTLDKDPCT-------------- 100
           E  +E   N   I+V   F S L     RL  A        K                  
Sbjct: 321 EDAVEICENGHKIVVFTQFRSVLHCYIDRLNVALANVPVNGKATQVPVFALHGDVPNDQR 380

Query: 101 ---IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++EW     P ++       G GLN+    +      L+  L  +QQ ++R+     
Sbjct: 381 QGIVKEWAAVDGPAVIVCMTQVAGIGLNMTAARHGQFLDKLFVPL-LNQQAVDRMN---- 435

Query: 157 RQAGF--KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G    ++V ++   A++T++  V   L+ K  + + ++ 
Sbjct: 436 -RIGQSTTQSVQIFDYQARDTVESRVESILKVKKNLFENIVE 476


>gi|28572293|ref|NP_789073.1| helicase regulator [Tropheryma whipplei TW08/27]
 gi|28410424|emb|CAD66810.1| putative helicase regulator [Tropheryma whipplei TW08/27]
          Length = 690

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T +     ++ +  +    +      + G G+NLQ   N +V   L W   E  Q I+R
Sbjct: 558 QTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASN-VVLSELSWTAAEQGQAIDR 616

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-----LKKETIHV 205
           +      + G    V  + ++   T+D  +   + +KS    L L+      +++E++H+
Sbjct: 617 L-----HRIGQTEPVTAWRILGAGTVDIRMAALVDSKSNDAILSLDGGDMREVQQESLHI 671


>gi|195427783|ref|XP_002061956.1| GK17274 [Drosophila willistoni]
 gi|194158041|gb|EDW72942.1| GK17274 [Drosophila willistoni]
          Length = 1274

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 48   WKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCT 100
                + +KI  +  +I       +   +++   + + L ++ KA      + +       
Sbjct: 1101 IIGDYSKKITHIVELILKIKNNDDQEKVLIFSQWQAILLQIAKALSDNGIVYRSKCHNQD 1160

Query: 101  IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++ +   KI  L    +    GLNL    + +       +  + +Q I RI      +
Sbjct: 1161 IVDFKDPNLKITCLLMPLSRGSKGLNLIEATH-VFLVEPILNPSDERQAIGRI-----HR 1214

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             G  +   V+  I  +TI+E +L  + +    
Sbjct: 1215 FGQSKPTTVHRFIVNDTIEENILSLITSDDDS 1246


>gi|55980989|ref|YP_144286.1| hypothetical protein TTHA1020 [Thermus thermophilus HB8]
 gi|55772402|dbj|BAD70843.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 1110

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 23/157 (14%)

Query: 53  DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           + K++ L  ++E          +++       L  L +              G  LD   
Sbjct: 470 ETKLRKLREVMEDERLQQTGEKLLIFTESRETLEYLVEKLRGWGYSVVSLHGGMDLDARI 529

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               E+ E     +     + G G+NLQ+  +++V + + W+    +Q + R+      +
Sbjct: 530 RAEHEFRERAQ--VMVSTEAGGEGINLQF-CSLMVNYDIPWNPNRLEQRMGRV-----HR 581

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
            G  + V +Y L+A +T +  VL+ L  K   IQ+ L
Sbjct: 582 YGQTKEVHIYNLVALDTREGKVLEALFRKLREIQEAL 618


>gi|120402110|ref|YP_951939.1| helicase domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954928|gb|ABM11933.1| helicase domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 964

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 26/160 (16%)

Query: 52  HDEKIKALEVIIEKA-------NAAPIIVAYHFNSDLARLQKAFPQ--GRTLD------- 95
            D K  AL  ++              II+       L  L+    +  GRT+D       
Sbjct: 468 ADAKWAALAELLTSEAMFEADRQRRKIIIFSENRDTLDYLEDRLVELLGRTVDVQVIHGA 527

Query: 96  ----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                       +       +     + G G+NLQ   +++V + + W+    +Q   RI
Sbjct: 528 MSWTDRRRAQANFIAEPSSSVLIATDAAGEGVNLQV-AHLMVNYDVPWNPNRLEQRFGRI 586

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 + G +    ++ L+A +T +  V + L  K  +Q
Sbjct: 587 -----HRIGQRHTCHLWNLVAADTREGDVFRTLLEKVEVQ 621


>gi|325982657|ref|YP_004295059.1| helicase domain-containing protein [Nitrosomonas sp. AL212]
 gi|325532176|gb|ADZ26897.1| helicase domain protein [Nitrosomonas sp. AL212]
          Length = 934

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----QKAFPQGRTL------ 94
           ++  +   DE I     ++   +   I++   + +    +    +  F +          
Sbjct: 506 DRKIRSFVDELIDQ---VLNSNSTEKILIFSEYRATQEYIASALRDRFGESSVALIHGSM 562

Query: 95  --DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++   +I ++             + G G+NLQ   +I+V F L W+     Q + R+ 
Sbjct: 563 SHEERAASIDQFETTGQ--FLVSTEAGGEGINLQRNCHIIVNFDLPWNPMRLVQRVGRL- 619

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                + G KR V V+ + A  T+D  ++Q L
Sbjct: 620 ----YRYGQKRKVIVFNMHAPQTLDADIMQML 647


>gi|290984663|ref|XP_002675046.1| helicase [Naegleria gruberi]
 gi|284088640|gb|EFC42302.1| helicase [Naegleria gruberi]
          Length = 960

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 40/183 (21%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------------PQGR 92
            H  K+  L  +IE+   +   I+V   +   L  +++                  P  R
Sbjct: 663 DHSPKMLCLIRMIEQCFLSNEKILVFSQYQETLDIIERIINNVNITTGLPLEDEHQPLKR 722

Query: 93  TLDKD---------------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            L ++                  +  +N     PLL         G++L      +V + 
Sbjct: 723 KLKRNLDYYRLDESMSVSLGQSVVDSFNSSNDAPLLLISTKVGSLGIDLSTS-QKIVLYD 781

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + WD     Q +      R  + G  + V +Y  +  NTI+  + ++L TK++    L  
Sbjct: 782 VCWDSSWDNQAV-----FRSFRYGQTKPVSIYRFVMYNTIESKIFEKLCTKTSPFKNLSE 836

Query: 197 ALK 199
             K
Sbjct: 837 DKK 839


>gi|307136203|gb|ADN34041.1| chromatin remodelling complex ATPase chain isw-1 [Cucumis melo
           subsp. melo]
          Length = 385

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 75/194 (38%), Gaps = 29/194 (14%)

Query: 9   RELYCDLQ--GENIEAF-NSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVII 63
           R L+C+L+     I+A  +   +++K  Q  L N  +Y D         + KI A+   +
Sbjct: 167 RALFCELEVVKGKIKACRSEEVESLKFQQKNLIN-KIYTDS-------AEAKIPAVLNYL 218

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E        V      +  R+    P      +         +  I        + G GL
Sbjct: 219 ET-------VIEKKKVNCIRIDGGTPPA---MRQALVSDFQQKDSIMAAVLSIKAGGVGL 268

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L    + ++F  L W   +  Q  +R       + G   +V ++YL+A +T+D+++   
Sbjct: 269 TLT-AASTVIFTELSWTPGDLIQAEDR-----AHRIGQVSSVNIHYLLANDTVDDIIWDV 322

Query: 184 LRTKSTIQDLLLNA 197
           +++K      +L+ 
Sbjct: 323 VQSKLENLGQMLDG 336


>gi|157692957|ref|YP_001487419.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
 gi|157681715|gb|ABV62859.1| possible SNF2 family helicase protein [Bacillus pumilus SAFR-032]
          Length = 556

 Score = 69.6 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT- 93
           L + A+    EK  +   + K   +  +I++ N   +I+   + +    LQ    Q    
Sbjct: 337 LGSSAIAQIMEKINEVQQNTKALEVVKLIQQLNEK-VIIFTEYRATQIYLQWFLQQNGIS 395

Query: 94  ----LDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       ++W +    +   +     + G G+NLQ+  N ++ + L W+    +Q
Sbjct: 396 SVPFRGGFKRGKKDWMKDLFRERAQVLIATEAGGEGINLQF-CNQIINYDLPWNPMRLEQ 454

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            I RI      + G +R V +Y +    T++E +L+ L  K  + + ++
Sbjct: 455 RIGRI-----HRLGQERDVHIYNMATNGTVEEHILKLLYEKIQLFENVI 498


>gi|281211182|gb|EFA85348.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1740

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 16/153 (10%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
              W    +  I  L  I +K  +   I+   ++  L  + +A  + +   +         
Sbjct: 1569 GSWGTKIESVISTLMTINKKKASDKTIIFSQWSDVLEIVSRALNENQIKHERGDKASGIH 1628

Query: 98   -PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I  +  E  I +L        +GLN+    +I +      +     Q I RI    
Sbjct: 1629 FQDAIARFRKEPAINVLLLPIKKGANGLNIIEATHIFI-VEPLLNPAVEAQAINRI---- 1683

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + G ++  F++  I +NTI+E V+Q  + K+
Sbjct: 1684 -HRFGQEKESFIHRFIIKNTIEEKVVQMSKAKA 1715


>gi|157114821|ref|XP_001652438.1| hypothetical protein AaeL_AAEL006963 [Aedes aegypti]
 gi|108877144|gb|EAT41369.1| conserved hypothetical protein [Aedes aegypti]
          Length = 726

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAH 115
                I+  H    L  + K   + +            D     ++++            
Sbjct: 520 EKQKFIIFAHHIKMLDAISKYLSKQKVDFIRIDGTTRSDLRSSLVEKFQTKDSCRAAVLS 579

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +C  G+ L     +++F  L W+     Q       +R  + G +  V V YL+A+ T
Sbjct: 580 LKACNAGITLT-AAQLVMFAELDWNPSTLAQA-----ESRAHRIGQEGTVIVRYLLAKGT 633

Query: 176 IDELVLQRLRTKSTI 190
            D+++   L+ K  I
Sbjct: 634 ADDIIWTMLQKKQNI 648


>gi|156344365|ref|XP_001621159.1| hypothetical protein NEMVEDRAFT_v1g145813 [Nematostella vectensis]
 gi|156206838|gb|EDO29059.1| predicted protein [Nematostella vectensis]
          Length = 223

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 44  EEKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQGR-------- 92
           + K+ +     K++ L+ I+   +  +   +++  ++   L   +K   Q R        
Sbjct: 89  DLKNVQPELSGKMQVLDYILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDG 148

Query: 93  --TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    +  +N+ K    +      + G GLNL  G N LV F   W+     Q +
Sbjct: 149 SMSIKKRQKIVDRFNDPKGGDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPANDDQAM 207

Query: 149 ERIGVTRQRQAGFKR 163
            R+    Q++    R
Sbjct: 208 ARVWRDGQKKKASYR 222


>gi|326670855|ref|XP_003199305.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Danio rerio]
          Length = 668

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 50  EVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
              + KI+A+   I           +V  H    L  + K             G T   +
Sbjct: 469 HTAEAKIRAIMEYISDMLECGREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAE 528

Query: 98  PCTI-QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + + +   +   +      +   GL L +   ++VF  L+W+     Q  +R+    
Sbjct: 529 RQLLCERFQASQQSCVAVLSITAANMGLTL-HSAALVVFAELFWNPGVLIQAEDRV---- 583

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G    V ++YL+A+ T D+ +   ++ K  + + +
Sbjct: 584 -HRIGQTSNVDIHYLVAKGTADDYLWPMIQAKMNVLEQV 621


>gi|322501559|emb|CBZ36638.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 908

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + L      + G GLNL  G + ++     ++     Q ++R       + G +  V VY
Sbjct: 742 VFLFLISTRAGGTGLNLT-GADTVILLDGDFNPHNDLQAVDRC-----HRIGQRNPVAVY 795

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLL 195
            L++ +T+ DE     +  K  ++ L+L
Sbjct: 796 RLVSPHTVEDERHSGIVDRKLKLEHLVL 823


>gi|330870035|gb|EGH04744.1| SNF2-related:helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 193

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 29  KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDA 88

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 89  FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 142

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 143 RMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 176


>gi|46138107|ref|XP_390744.1| hypothetical protein FG10568.1 [Gibberella zeae PH-1]
          Length = 786

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 26/166 (15%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEV---IIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           QL++     +E          K++++     +  K+     +V  ++ + L  LQ     
Sbjct: 625 QLSS----LEEPARIHLGLSTKLQSVADNICLRSKSTDRVSLVFSYWTTTLNLLQTMLED 680

Query: 91  GRTL----------DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              +           +    + E+ N+  I +L     +   GL L     + +     W
Sbjct: 681 RGIVLRRIDGSLGNGERLRVLNEFKNDPAISVLLITMQTGAVGLTLTVATQVHI-IEPQW 739

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           +    +Q I R       + G    V V+  I +NT++E  ++   
Sbjct: 740 NPSVEEQAIAR-----ALRMGQSNIVKVFRYIMKNTVEE--MEAQE 778


>gi|116326115|ref|YP_803440.1| global transactivator-like protein [Anticarsia gemmatalis
           nucleopolyhedrovirus]
 gi|112180853|gb|ABI13830.1| global transactivator-like protein [Anticarsia gemmatalis
           nucleopolyhedrovirus]
          Length = 498

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 33/195 (16%)

Query: 28  KTVKCLQLANGAVYYD------------EEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
              +  Q+                    E ++        ++ ++ +++  N   ++V  
Sbjct: 296 LLCRLRQMCCHPALTKCAHMFADQAIIFEPQYVSSKCRRVLEIVQQVLDTPNDKVVLV-S 354

Query: 76  HFNSDLARLQKAFPQ---------GRTLDKDPCTIQ-EWNEGKIP--LLFAHPASCGHGL 123
            +   L  + K   Q         G+   ++   ++ ++N    P  +L       G GL
Sbjct: 355 QWVEFLYIVAKLLQQRGIPILLYTGQLRVEERTAVENQFNAADSPYRVLLMSINCGGVGL 414

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVL 181
           NL  G N ++     W+ +   Q   RI      + G K+  +VY ++    N+I+  + 
Sbjct: 415 NLTGG-NHIIMLEPHWNPQIELQAQSRI-----HRMGQKKQTYVYKMLNDEDNSIERYMK 468

Query: 182 QRLRTKSTIQDLLLN 196
            R   K T  + + +
Sbjct: 469 MRQDNKLTFVNKVFD 483


>gi|302769926|ref|XP_002968382.1| hypothetical protein SELMODRAFT_60240 [Selaginella moellendorffii]
 gi|300164026|gb|EFJ30636.1| hypothetical protein SELMODRAFT_60240 [Selaginella moellendorffii]
          Length = 1107

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 28/169 (16%)

Query: 26  ASKTVKCLQL--ANGAVYYDEEKHWKEVHDE------KIKALEVIIEKAN--AAPIIVAY 75
           A    KC++L       Y +   H +  ++       K+  L+ I+ K       +++  
Sbjct: 315 APLQNKCMELRKVCNHPYLNYPPHCRLFNENMVRMCGKLWILDRILIKLQRSGHRVLLFS 374

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGL 123
                L  L+          +       LD     I ++N    +  +      + G GL
Sbjct: 375 TMTKLLDILEDYLQWRGLIYRRIDGTTPLDSRETAIVDFNAPGSQCFIFLLSIRAAGRGL 434

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           NLQ   + +V +    + +  +Q + R       + G K  V V Y+ A
Sbjct: 435 NLQT-ADTVVIYDPDPNPKNEEQAVAR-----AHRIGQKSEVKVIYMEA 477


>gi|295706576|ref|YP_003599651.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294804235|gb|ADF41301.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 557

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           + K + +  +++K +   +I+   + +    LQ    Q         G         +++
Sbjct: 358 NAKAEKVLELVQKIDDK-VIIFTEYRATQLYLQWYLKQHGITSVPFRGGFKRGKKDWMKQ 416

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E    +  A   + G G+NLQ+  + ++ + L W+    +Q I R+      + G K 
Sbjct: 417 LFESHAQVFIA-TEAGGEGINLQF-CHHIINYDLPWNPMRLEQRIGRV-----HRLGQKH 469

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  Q+T++E +L+ L  K  + + ++
Sbjct: 470 DVHIYNLAIQHTVEEHILKLLYEKINLFERVV 501


>gi|71654268|ref|XP_815757.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70880835|gb|EAN93906.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1053

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 96  KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   T++ +N  +   +L     + G G+N+     +++  S            +R  + 
Sbjct: 690 ERENTLRSFNSSRGADVLLLSMKAGGVGINITSATRVILADS------GFNPADDRQAIG 743

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           R  + G  R VFVY L+   T++  + Q+   K  +   ++   +LK++ +
Sbjct: 744 RAYRYGQTRPVFVYRLVCYQTLEHRMFQQKVAKEWLFHTIVEEASLKRDAL 794


>gi|15229135|ref|NP_189853.1| CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|7523392|emb|CAB86450.1| putative protein [Arabidopsis thaliana]
          Length = 1256

 Score = 69.6 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF------PQGRTLDKDPC 99
            KH  +   + +  L ++        I++  H  + +    + F       +GR L     
Sbjct: 1050 KHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTG 1109

Query: 100  TIQEWNEGKI-----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ +  G++            +L A   +C  G++L    + ++     W+  + +Q I
Sbjct: 1110 DLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLT-AASRVIMLDSEWNPSKTKQAI 1168

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R       + G ++ V+VY L+++ T++E   +R   K  +  ++ +
Sbjct: 1169 AR-----AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFS 1211


>gi|328858862|gb|EGG07973.1| hypothetical protein MELLADRAFT_85301 [Melampsora larici-populina
           98AG31]
          Length = 150

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +   + ++        + G GL++     + +     W+ +  QQ ++R+    
Sbjct: 23  RTFQLKKFNQDPEVDAFVVSIEAGGVGLDMTCADEVYIM-DAHWNPQIVQQAVDRVQ--- 78

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G    V V++++ Q+++++ +    + K+++   ++
Sbjct: 79  --RMGQTHPVNVFHVVVQDSVEQHLFNVQKKKASLASKVI 116


>gi|145295759|ref|YP_001138580.1| hypothetical protein cgR_1685 [Corynebacterium glutamicum R]
 gi|140845679|dbj|BAF54678.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 892

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI----------PLLFAHP 116
           +    ++  +F   L  L+K   + R + +    +       +            L A  
Sbjct: 714 HGRKALIFTYFLDVLDELEKHLGE-RVIGRISGDVPATKRQLLVDALSHSKPGSALIAQI 772

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+Q   ++ +           QQ + R+      + G    V V+ LI   T 
Sbjct: 773 TAGGVGLNIQ-SASLCIICEPQVKPTIEQQAVARV-----HRMGQTATVQVHRLIGDETA 826

Query: 177 DELVLQRLRTKSTIQD 192
           DE +L+ L  K+ + D
Sbjct: 827 DERMLEILAGKTHVFD 842


>gi|195377036|ref|XP_002047298.1| GJ13361 [Drosophila virilis]
 gi|194154456|gb|EDW69640.1| GJ13361 [Drosophila virilis]
          Length = 1282

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 25/174 (14%)

Query: 45   EKHWKEVHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
                      KI  +  ++     +  +   I++   + + L  +  A  Q     +   
Sbjct: 1106 SSKVIGDFSTKIAYIVELVLKIKSQSKDKEKILIFSQWATILNHIASALSQNGIEYRSKF 1165

Query: 99   --CTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I E+ + +  +  L    A    GLNL    + +          E  Q I R+   
Sbjct: 1166 TTRDIDEFKDPERNVTCLLMPLARGAKGLNLIEATH-VFLVEPILTPGEELQAIGRV--- 1221

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALK 199
               + G  +   V+  I   TI+E +L+ +++            + ++ L++LK
Sbjct: 1222 --HRFGQTKPTTVHRFIVNGTIEENILKLIKSADDKSTLSTHWDLDNMTLDSLK 1273


>gi|307170865|gb|EFN62976.1| Transcription termination factor 2 [Camponotus floridanus]
          Length = 966

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIV----------AYHFNSDLARLQKAFPQGRT 93
           ++          +  +E I++ +    IIV          A H  S        F     
Sbjct: 787 DDDRISSKMRIMLNMVEKILQNSEDKLIIVSQWTTLLNVIASHLPSIKDATFSKFTGNVA 846

Query: 94  LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +      +  +N  K    +L     + G       GGN L+ F + W+ +   Q  +RI
Sbjct: 847 IKDRQNVVNSFNSQKSGPRILLLSL-TAGGVGLNLVGGNHLLLFDIHWNPQLETQAQDRI 905

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 + G K+ V++Y  I  +TI+E V      K  I   +L+  + +T
Sbjct: 906 -----YRFGQKKNVYIYKFICVDTIEERVKALQEQKLEIARNVLSGDRNDT 951


>gi|284046270|ref|YP_003396610.1| helicase [Conexibacter woesei DSM 14684]
 gi|283950491|gb|ADB53235.1| helicase domain protein [Conexibacter woesei DSM 14684]
          Length = 726

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 30/216 (13%)

Query: 2   KQYHKFQRELY-----CDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEK 55
           ++Y   +R++        L    + A  +A+   K   QL  GA+        +     K
Sbjct: 496 REYRLAERDVIRWLREQPLDLSELRAKIAATLRAKRLAQL--GALQ-------RIAARGK 546

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------DKDPCTIQEWNEG 107
           + A    I    A+  P++V          + + F     L           T++ + + 
Sbjct: 547 LHAALAWIHDFLASGEPLVVFARHVEVQDAVLERFADAAHLLGRDGATAREATVRAFQQP 606

Query: 108 KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             P L+ A       G+ L    N + F  L W    H Q  +R       + G   AV 
Sbjct: 607 DGPQLIVAATQVAAQGITLTRASN-VAFLELEWTPAMHDQAEDRC-----HRIGQHDAVT 660

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +YL+A  TIDE +   ++ K  I   + +  + + 
Sbjct: 661 AWYLLAARTIDETMAHLIQRKRGIVAAVTDGRRLDG 696


>gi|24581780|ref|NP_608883.1| Marcal1 [Drosophila melanogaster]
 gi|75027220|sp|Q9VMX6|SMAL1_DROME RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1
 gi|22945611|gb|AAF52182.2| Marcal1 [Drosophila melanogaster]
 gi|39752623|gb|AAR30193.1| RE44811p [Drosophila melanogaster]
 gi|220948472|gb|ACL86779.1| Marcal1-PA [synthetic construct]
          Length = 755

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGK 108
           L+ ++++      I+  H    +  +               G+T  D    ++  + +  
Sbjct: 528 LKTLVKEQ--KKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKS 585

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     I+VF  L W+     Q       +R  + G  + V  
Sbjct: 586 SCKVALLSLKACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVIC 639

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YLIA NT D+++   L+ K  +
Sbjct: 640 RYLIAHNTADDIIWNMLKNKQEV 662


>gi|297818740|ref|XP_002877253.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297323091|gb|EFH53512.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1254

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            + F +GR +DK          G+  +L A   +C  G++L    + ++     W+  + +
Sbjct: 1110 ELFERGRVIDKFEEP-----GGQSRVLLASITACAEGISLT-AASRVIMLDSEWNPSKTK 1163

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q I R       + G ++ V+VY L+++ T++E   +R   K  +  ++ +
Sbjct: 1164 QAIAR-----AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFS 1209


>gi|238493629|ref|XP_002378051.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220696545|gb|EED52887.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 2055

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 30/209 (14%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQ------------LANGAVYYDEEKHWKEVHD 53
            + + E   +++ +N++A     +  +C              +    +  DE     +   
Sbjct: 1814 EMRDET--EVKEDNVDASEETVQKEECNVEGCRGSGKKFNVMDASTLKCDERDRSAKYGG 1871

Query: 54   EKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEW 104
             K+  +  II+       I++   F   +    KA    +           +    +Q +
Sbjct: 1872 SKLDKMIEIIQAVPTGDRILLFIQFPELIDVASKALELAKIKYIAIIATDRRAAQKVQHF 1931

Query: 105  NE----GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQ 158
             E    G+  +L  +  S    GLNLQ   N ++F S  +   ++         + R R+
Sbjct: 1932 QEAGGFGENKVLILNLGSEMAAGLNLQC-ANHVIFLSPMFAQTQYDYDSSMTQAIGRARR 1990

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             G  + V++Y+L+A+ TID  + Q    K
Sbjct: 1991 YGQTKHVYIYHLLARMTIDTTLFQERHGK 2019


>gi|317157659|ref|XP_001826363.2| C-5 cytosine-specific DNA methylase [Aspergillus oryzae RIB40]
          Length = 2165

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT 93
            +    +  DE     +    K+  +  II+       I++   F   +    KA    + 
Sbjct: 1963 MDASTLKCDERDRSAKYGGSKLDKMIEIIQAVPTGDRILLFIQFPELIDVTSKALELAKI 2022

Query: 94   L--------DKDPCTIQEWNE----GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWD 140
                      +    +Q + E    G+  +L  +  S    GLNLQ   N ++F S  + 
Sbjct: 2023 KYIAIIATDRRAAQKVQHFQEAGGFGENKVLILNLGSEMAAGLNLQC-ANHVIFLSPMFA 2081

Query: 141  LEEHQ-QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++         + R R+ G  + V++Y+L+A+ TID  + Q    K
Sbjct: 2082 QTQYDYDSSMTQAIGRARRYGQTKHVYIYHLLARMTIDTTLFQERHGK 2129


>gi|3420753|gb|AAC31920.1| helicase domain-containing protein [Dictyostelium discoideum]
          Length = 344

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +++       N+    +      + G GL L      ++F  L W      Q  +R    
Sbjct: 12  NRNDYVNDFQNDPNCRVAVLSITAAGTGLTLT-AATCVIFAELSWTPGVLFQAEDR---- 66

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G   +V V YLIA  T+DE++   + +K T+   +L+
Sbjct: 67  -AHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLD 107


>gi|224107415|ref|XP_002314473.1| hypothetical protein POPTRDRAFT_229741 [Populus trichocarpa]
 gi|222863513|gb|EEF00644.1| hypothetical protein POPTRDRAFT_229741 [Populus trichocarpa]
          Length = 127

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT--------IQ 102
           K++ L+ ++ K  A    ++        L  +++   + Q R L  D  T        I 
Sbjct: 2   KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTWKQYRYLRLDGHTSGGDRGSLID 61

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N+   P  +      + G G+NLQ   + ++ F   W+ +   Q   R       + G
Sbjct: 62  RFNQQDSPYFIFLLSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIG 115

Query: 161 FKRAVFVYYL 170
            KR V V   
Sbjct: 116 QKRDVLVLRF 125


>gi|294501229|ref|YP_003564929.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294351166|gb|ADE71495.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 557

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           + K + +  +++K +   +I+   + +    LQ    Q         G         +++
Sbjct: 358 NAKAEKVLELVQKIDDK-VIIFTEYRATQLYLQWYLKQHGITSVPFRGGFKRGKKDWMKQ 416

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E    +  A   + G G+NLQ+  + ++ + L W+    +Q I R+      + G K 
Sbjct: 417 LFESHAQVFIA-TEAGGEGINLQF-CHHIINYDLPWNPMRLEQRIGRV-----HRLGQKH 469

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V +Y L  Q+T++E +L+ L  K  + + ++
Sbjct: 470 DVHIYNLAIQHTVEEHILKLLYEKINLFERVV 501


>gi|94263334|ref|ZP_01287149.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93456289|gb|EAT06419.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 952

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 30/171 (17%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL------QKAFPQGRTL------ 94
                 +++A+  ++++  A    ++V   F      L      +   P+          
Sbjct: 768 IVYSSARLRAMINVMDELFAKNEKLLVFVEFLDLQESLIPYLQQRYLLPKPPLRISGKVS 827

Query: 95  -DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             K    +  + + +     ++   P + G GL L    N ++  + WW+     Q  +R
Sbjct: 828 GAKRKSLVDSFQQSRSNLFDVMLLSPKAGGVGLTLT-AANNVIHLTRWWNPAVEDQCTDR 886

Query: 151 IGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
           +      + G  + V VY  +A      +++ D+ +   L  K  +   +L
Sbjct: 887 V-----YRIGQNKPVNVYLPLAIHPRFNEHSFDQNLHLLLERKRKLSRSVL 932


>gi|302758372|ref|XP_002962609.1| hypothetical protein SELMODRAFT_404507 [Selaginella moellendorffii]
 gi|300169470|gb|EFJ36072.1| hypothetical protein SELMODRAFT_404507 [Selaginella moellendorffii]
          Length = 760

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            I V   +   L  L+ A     +  +   +I E+ +  I ++        +GLNL    
Sbjct: 319 KIFVFSTWQEVLDLLEHALKSTSSAGQMGSSILEFKKENIQVMLLPIQHGANGLNLIEAQ 378

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++      +     Q I R+      + G +    V+  I  NT++E + +  + K+ 
Sbjct: 379 H-VILVEPLLNPAVEAQAINRV-----HRIGQRLKTLVHRFIICNTVEENIYKMSQQKTN 432

Query: 190 I 190
           +
Sbjct: 433 L 433


>gi|75214627|gb|ABA18099.1| SNF2 domain-containing protein [Olimarabidopsis pumila]
          Length = 1256

 Score = 69.2 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF------PQGRTLDKDPC 99
            KH  +   + +  L ++        I++  H  + +    + F       +GR L     
Sbjct: 1050 KHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTG 1109

Query: 100  TIQEWNEGKI-----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ +  G++            +L A   +C  G++L    + ++     W+  + +Q I
Sbjct: 1110 DLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLT-AASRVIMLDSEWNPSKTKQAI 1168

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R       + G ++ V+VY L+++ T++E   +R   K  +  ++ +
Sbjct: 1169 AR-----AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFS 1211


>gi|145356928|ref|XP_001422675.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582918|gb|ABP00992.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 638

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 18/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTL---DKDPCTIQ------EWNEG 107
           LE +I+ +  +  +   H    L  + +     + +T+      P  ++           
Sbjct: 439 LETLIDGST-SKFLFFAHHGVLLDAVAQCMDAKKVKTIRIDGSTPAAVRGDLVNAFQRRD 497

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +      + G GL L    + ++F  + W   +  Q  +R       + G + +V V
Sbjct: 498 DVRVAILSIKAAGMGLTLT-AASTVIFGEMVWTPGDLIQAEDR-----AHRIGQQSSVLV 551

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YL A++TIDE++ Q ++ K      +LN 
Sbjct: 552 QYLHAKDTIDEIIWQSIKKKLDNLGAVLNG 581


>gi|315446141|ref|YP_004079020.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
 gi|315264444|gb|ADU01186.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
          Length = 965

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 18  ENIEAFNSASKTVKCLQ---LANGAVYYDEEKHWKEVHDEKIKALEVIIEK-------AN 67
           + + +  + ++TV  L+   L  G +    E  +    D K  AL  ++           
Sbjct: 431 DEVVSVATNARTVAELEAEILVLGRLVAKAEAVYSARADAKWAALAELLTSEAMFEADGQ 490

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ--GRTLD-----------KDPCTIQEWNEGKIPLLFA 114
              II+       L  L+       GRT+D                   +       +  
Sbjct: 491 RRKIIIFSENRDTLDYLEDRLVGLLGRTVDVQVIHGALSWTDRRRAQANFITEPSSSVLI 550

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ   +++V + + W+    +Q   RI      + G +    ++ L+A +
Sbjct: 551 ATDAAGEGVNLQV-AHLMVNYDVPWNPNRLEQRFGRI-----HRIGQRHTCHLWNLVAAD 604

Query: 175 TIDELVLQRLRTKSTIQ 191
           T +  V + L  K  +Q
Sbjct: 605 TREGDVFRTLLEKVEVQ 621


>gi|302896542|ref|XP_003047151.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
 gi|256728079|gb|EEU41438.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
          Length = 971

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                KD    +  N  +  +  A     G  L+L    N ++   LW++    QQ  +R
Sbjct: 825 ANAKQKDKALREFRNNPEQTIFLASMKCGGQALDLPV-ANRVIIVDLWYNKTVEQQAFKR 883

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +      + G K+   +  ++A+ +IDE + +    K TI
Sbjct: 884 V-----HRIGQKKETHLVRILARGSIDERLYKLQNAKETI 918


>gi|308806345|ref|XP_003080484.1| transcription regulatory protein SNF2, putative (ISS) [Ostreococcus
           tauri]
 gi|116058944|emb|CAL54651.1| transcription regulatory protein SNF2, putative (ISS) [Ostreococcus
           tauri]
          Length = 1192

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 76  HFNSDLARLQKAFPQGRT-LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNIL 132
               D A L+     G T L++    I E+N       +      + G GLNLQ   + +
Sbjct: 815 WTTPDGADLKYCRIDGTTSLEQREVAINEFNAQHSDKFIFLLSIRAAGRGLNLQT-ADTV 873

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           V +    + +  +Q I R       + G KR V V +  A   +D+   +    K  
Sbjct: 874 VVYDPDPNPKNEEQAIAR-----AHRIGQKREVRVIHFEA---VDDAPNETQSPKDA 922


>gi|322826005|gb|EFZ30802.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1090

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 96  KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   T++ +N      +L     + G G+N+     +++  S            +R  + 
Sbjct: 726 ERENTLRSFNSLRGADVLLLSMKAGGVGINITSATRVILADS------GFNPADDRQAIG 779

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           R  + G  R VFVY L+   T++  + Q+   K  +   ++   +LK++ +
Sbjct: 780 RAYRYGQTRPVFVYRLVCYQTLEHRMFQQKVAKEWLFHTIVEEASLKRDAL 830


>gi|322499377|emb|CBZ34450.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1102

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 51  VHDEKIKALEV----IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
               KI A++     I+E+   +   +I+  H    +  L+ A    R            
Sbjct: 459 TARAKIPAVQDYVSGIVEQHLDSGEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISG 518

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++P       E    +      S G G N     + +VF  L W+   H Q  +
Sbjct: 519 DTPPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFTC-ASTVVFTELDWNPSTHLQCED 577

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 578 RV-----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|321399531|emb|CAM68321.2| putative DNA helicase [Leishmania infantum JPCM5]
          Length = 1102

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 51  VHDEKIKALEV----IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
               KI A++     I+E+   +   +I+  H    +  L+ A    R            
Sbjct: 459 TARAKIPAVQDYVSGIVEQHLDSGEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISG 518

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++P       E    +      S G G N     + +VF  L W+   H Q  +
Sbjct: 519 DTPPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFTC-ASTVVFTELDWNPSTHLQCED 577

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 578 RV-----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|146087740|ref|XP_001465890.1| DNA helicase [Leishmania infantum JPCM5]
          Length = 935

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 51  VHDEKIKALEV----IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
               KI A++     I+E+   +   +I+  H    +  L+ A    R            
Sbjct: 459 TARAKIPAVQDYVSGIVEQHLDSGEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISG 518

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++P       E    +      S G G N     + +VF  L W+   H Q  +
Sbjct: 519 DTPPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFTC-ASTVVFTELDWNPSTHLQCED 577

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R+      + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 578 RV-----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|242212599|ref|XP_002472132.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728776|gb|EED82663.1| predicted protein [Postia placenta Mad-698-R]
          Length = 468

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    +I+V +      +   Q ++R       + G  + V
Sbjct: 10  DSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDLISQADLQAMDR-----AHRIGQTKQV 63

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +V+  I + +++E +L+R   K  +  L++   + +   
Sbjct: 64  YVFRFITEGSVEERMLERTAQKLRLDQLVMQQSRMQHTK 102


>gi|327287818|ref|XP_003228625.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Anolis carolinensis]
          Length = 960

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWN 105
           I+ +  ++E       +V  H    L  + +A  +         G T   +  ++ QE+ 
Sbjct: 752 IEYILDLLESGKEK-FLVFAHHKLVLDAIAEALAKKHIGYIRIDGSTPSAERQSLCQEFQ 810

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K+ +      +   GL L    +++VF  L+W+     Q  +R       + G   +
Sbjct: 811 LSEKLSVAVLSLTAANMGLTL-SSADLVVFAELFWNPGVLIQAEDR-----AHRIGQTSS 864

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 865 VNIHYLVAKGTADDYLWPMIQEK 887


>gi|167525194|ref|XP_001746932.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774712|gb|EDQ88339.1| predicted protein [Monosiga brevicollis MX1]
          Length = 712

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEW--NEGK--- 108
           LE ++   +   +++  H  + L  L     Q+     R     P  +++   N  +   
Sbjct: 411 LEDLMN--HDGKLLIFAHHKTLLDELATFLCQRQLRHIRIDGSTPTHLRQQLCNSFQDDV 468

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GL L +  N +VF  L+W+     Q  +R       + G +  V V
Sbjct: 469 LCRVAVLSITTAGTGLTL-HAANTVVFAELYWNPGHLYQAEDR-----AHRVGQRHNVNV 522

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YL+   T+D+++  +L+ K+ I    +  
Sbjct: 523 RYLLCPGTLDDVMWSQLQRKAKIVQRAMAG 552


>gi|301630532|ref|XP_002944371.1| PREDICTED: transcription termination factor 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 143

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCT-IQEWNEGKI--PLLFAHPASCGHGLNLQYG 128
           IVA H    L  L  A   G    K     ++++N       ++     + G GLNL  G
Sbjct: 4   IVAAHLK--LIGLSYATIDGSVNPKQRMDMVEDFNNNPKGPQVMLVSLCAGGVGLNLVGG 61

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + L    + W+     Q  +RI      + G ++ V ++  +   T++E + Q    K 
Sbjct: 62  NH-LFLLDMHWNPALEDQACDRI-----YRVGQQKDVVIHRFVCLGTVEEKISQLQEKKK 115

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 116 DLAKKVLSG 124


>gi|198465924|ref|XP_001353822.2| GA20306 [Drosophila pseudoobscura pseudoobscura]
 gi|198150371|gb|EAL29557.2| GA20306 [Drosophila pseudoobscura pseudoobscura]
          Length = 1259

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 23/172 (13%)

Query: 46   KHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--DPC 99
            K        KI  +  +I       N A I++   + + L ++  A    R + +     
Sbjct: 1088 KTMVGSFSTKITCIVQLILKITADDNQAKILIFSQWQAILEQISIALRLNRIVFRKCSNM 1147

Query: 100  TIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+   ++ +  L    +    GLNL    + +       +  + +Q I RI      
Sbjct: 1148 DLDEFKSTEMNVTCLLMALSRGSKGLNLIEATH-VFLVEPILNPGDERQAIGRI-----H 1201

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNALKK 200
            + G  +A  V+  I   TI+E +L  + +            +++L L++LKK
Sbjct: 1202 RFGQTKATTVHRFIVNGTIEENILSLISSADDSKTLGTHWDLENLTLDSLKK 1253


>gi|126667815|ref|ZP_01738782.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
 gi|126627763|gb|EAZ98393.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
          Length = 877

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 40/195 (20%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYH------FNSDLAR--LQK 86
           AV+    +  KE    KI  +  ++E+A    +   I+ A+H      +   L    +++
Sbjct: 593 AVFEQLSRQRKETALAKIPQVMELVEQALNEGSGKLILFAHHREVVEAYQDALNALFIKQ 652

Query: 87  AFPQGRT---------------------LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
           A  Q R                        K       +  + K  +      + G G+ 
Sbjct: 653 AKAQDRETRQRIGTTQPNSLALVYGPTPKGKRQAEADRFQADPKCTVFLGSIGAAGVGIT 712

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L      ++F  L W      Q  +R       + G    V V++ +   +ID  +++RL
Sbjct: 713 LT-AATKVLFGELDWVPGIVSQAEDR-----AHRIGQLDNVLVWHAVVDGSIDARMVRRL 766

Query: 185 RTKSTIQDLLLNALK 199
             K  + D  L+  K
Sbjct: 767 IEKQKVLDSALDDEK 781


>gi|222624248|gb|EEE58380.1| hypothetical protein OsJ_09537 [Oryza sativa Japonica Group]
          Length = 1474

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ---------------GRTLDKDPCTIQEWNE- 106
            + +A    ++V   +   L  L+K   +               G T D+    +  +N  
Sbjct: 1279 LSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQREQAVHRFNNS 1338

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                + F    +CG G++L     I++              + R  + R  + G  + V+
Sbjct: 1339 PDARVFFGSIKACGEGISLVGASRIVILD------VHENPSVMRQAIGRAYRPGQSKMVY 1392

Query: 167  VYYLIAQNTIDEL 179
             Y L+A ++ +E 
Sbjct: 1393 CYRLVAADSPEED 1405


>gi|294676842|ref|YP_003577457.1| SNF2 family helicase [Rhodobacter capsulatus SB 1003]
 gi|294475662|gb|ADE85050.1| helicase, SNF2 family [Rhodobacter capsulatus SB 1003]
          Length = 412

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 27/137 (19%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVA-------YHFNSD------LARLQKAFPQGRTLDK 96
              ++ A   I+ +  A     +V        Y F         L R+         + +
Sbjct: 193 ASARLAATFDILRQIRAKGERALVFIEHRQMQYRFIEIARAEFGLDRI-DLINGETPIAQ 251

Query: 97  DPCTIQEWNE-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +  +       G   LL   P + G GL L    + ++  S WW+    +Q  +R+
Sbjct: 252 RQQIVNRFQAHLEQGGGFDLLVLGPKAAGTGLTLTAATH-VIHLSRWWNPAAEEQCNDRV 310

Query: 152 GVTRQRQAGFKRAVFVY 168
                 + G  R V ++
Sbjct: 311 -----HRLGQTRPVQIH 322


>gi|322492158|emb|CBZ27432.1| putative helicase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1261

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 15/204 (7%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN- 67
            EL                K +  ++L   A+  DE+     +  + +  LE +I K N 
Sbjct: 781 EELCVPPSLNYTPLLEDGVKLLVAIKLVAAAMARDEKVLLFSLSTQLLTFLEHMIAKVNI 840

Query: 68  --AAPII-VAYHFNSDLAR-LQKAFPQGRT-LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
               P+       +  L R ++     G     +    +++++    P L      + G 
Sbjct: 841 EWRRPVAASQRQPHPQLPRPIRYCRLDGSHSAAQRAAMLEDFDRSHGPDLFLLSTKAGGV 900

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+ +      ++     ++  + QQ I R       + G  R V+VY L+   T++  + 
Sbjct: 901 GITVT-AATRVILVDTSFNPADDQQAIGR-----AYRYGQTRPVYVYRLMCYPTLEYSIF 954

Query: 182 QRLRTKSTIQDLLLN--ALKKETI 203
            +   K  +   ++   ++K++ +
Sbjct: 955 VQKLAKEWLFKTVIEESSVKRDGL 978


>gi|37651342|ref|NP_932651.1| global transactivator-like protein [Choristoneura fumiferana DEF
           MNPV]
 gi|37499251|gb|AAQ91650.1| global transactivator-like protein [Choristoneura fumiferana DEF
           MNPV]
          Length = 499

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 40/227 (17%)

Query: 3   QYHKFQREL-------YCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------ 43
            Y K + E              +     +      +  Q+                    
Sbjct: 265 VYDKLKSESQRAYDDAVAGGGDKTRNMQDVLWLLCRLRQMCCHPALTKCAHMFADQATIF 324

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
           E ++        ++ ++ +++  N   ++V   +   L  + K   Q         G+  
Sbjct: 325 EPQYASSKCRRVLEIVQQVLDTPNDKVVLV-SQWVEFLYIVAKLLRQRGIPILLYTGQLR 383

Query: 95  DKDPCTIQ-EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            ++   ++ ++N    P  +L       G GLNL  G N +V     W+ +   Q   RI
Sbjct: 384 VEERTAVENQFNAADSPYRVLLMSINCGGVGLNLTGG-NHIVMLEPHWNPQIELQAQSRI 442

Query: 152 GVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
                 + G K+  +VY ++    N+I+  +  R   K T  + + +
Sbjct: 443 -----HRMGQKKQTYVYKMLNDEDNSIERYMKMRQDKKLTFVNKVFD 484


>gi|116191603|ref|XP_001221614.1| hypothetical protein CHGG_05519 [Chaetomium globosum CBS 148.51]
 gi|88181432|gb|EAQ88900.1| hypothetical protein CHGG_05519 [Chaetomium globosum CBS 148.51]
          Length = 219

 Score = 68.8 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGLNL    N  + F  WW      Q   RI      + G  + V    L+A  ++DE
Sbjct: 42  GAHGLNLT-AANRAIVFDHWWHEGLECQAFARI-----HRIGQTKTVHTIKLVAAGSMDE 95

Query: 179 LVLQRLRTKSTI 190
            +L     K   
Sbjct: 96  TILGMQARKRET 107


>gi|156407998|ref|XP_001641644.1| predicted protein [Nematostella vectensis]
 gi|156228783|gb|EDO49581.1| predicted protein [Nematostella vectensis]
          Length = 532

 Score = 68.8 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI-QEWNEGKIP 110
            ++E       +V  H    L  +               G+T       +  ++ + K  
Sbjct: 378 DLLE--GGHKFLVFGHHQDMLDAISDCLMHKKYSYIRIDGKTPSSKRQMLCDQFQKDKNT 435

Query: 111 L-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           +       +   GL L  G   +VF  L+W+     Q  +R+      + G K +V ++Y
Sbjct: 436 VVAVLSITAANTGLTLTEG-TAVVFAELFWNPGALVQAEDRV-----YRIGQKNSVNIHY 489

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+A+ T D+ +   ++ K  +
Sbjct: 490 LVAKGTADDYLWPLIQHKLDV 510


>gi|326922946|ref|XP_003207703.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Meleagris gallopavo]
          Length = 760

 Score = 68.8 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 26/199 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKI-KALEV 61
           QR++        I A   A    +  ++A G     +EK    +      + KI   +E 
Sbjct: 477 QRKMVVVAPEG-INAKTKAMLAAEAKKMAKGYESKQQEKEALLLFYNRTAEAKIHSVIEY 535

Query: 62  IIE--KANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQ-----EWN-EGK 108
           I+E  ++     +V  H    L  +     +K F   R     P   +     ++    K
Sbjct: 536 ILELLESGKDKFLVFAHHKVVLDAIVEELEKKHFDYIRIDGSTPSAERQSLCQKFQLSEK 595

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      +   GL L    +++VF  L+W+     Q  +R       + G   +V V+
Sbjct: 596 QAVAVLSLTAANMGLTL-SAADLVVFAELFWNPGVLIQAEDR-----AHRIGQTSSVNVH 649

Query: 169 YLIAQNTIDELVLQRLRTK 187
           YL+A+ T D+ +   ++ K
Sbjct: 650 YLVARGTADDFLWPMIQEK 668


>gi|168046653|ref|XP_001775787.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162672794|gb|EDQ59326.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 657

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQK----------AFPQGR 92
            K + E    K+ A++  +     A    +V  H  S L  +++              G 
Sbjct: 488 NKIYTESAVVKLPAVQEYLTTMIDAECKFLVFAHHQSMLDGIEQLLMKKKVGLIRIDGGT 547

Query: 93  TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   +  + E   I        + G GL L    + ++F  + W   +  Q  +R 
Sbjct: 548 PQSARQALVTRFQENDNIIAAVLGIRAAGVGLTLT-AASTVIFAEMSWTPGDLVQAEDR- 605

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G   +V VYYL A +TID+++   ++ K      +L+ 
Sbjct: 606 ----AHRIGQASSVNVYYLHAHDTIDDIIWDTVQNKLENLSQVLDG 647


>gi|126310663|ref|XP_001370692.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase
            [Monodelphis domestica]
          Length = 1686

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
                    +E+   K  H  K++A    L+ I  K   A  +V   +   L  + KA   
Sbjct: 1494 FTAETANQEEDIPVKGSHSTKVEAVVRTLKRIQFKNPGAKSLVFSTWQDVLDIISKALYD 1553

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +      I  + E         KI +L     +  +GLN+    ++L       +  
Sbjct: 1554 NNMVFAQINGINRFQENLSAFKYDPKINILLLPLHTGSNGLNIIEATHVL-LVEPILNPA 1612

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1613 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1651


>gi|330797634|ref|XP_003286864.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
 gi|325083166|gb|EGC36626.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
          Length = 534

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 27/158 (17%)

Query: 54  EKIKA----LEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------------- 93
            K+ A    L+  + +       ++  H    +  +     + +                
Sbjct: 380 YKLSAINQFLKDKLTDAPPDQKFLIFAHHKGVIEGICNMLRKIKIDKEKLDFITIVGSTQ 439

Query: 94  -LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +++       +  K  +      + G GL L      ++F  L W      Q  +R  
Sbjct: 440 AQNRNELVNHFQSNPKCRIAVLSITAAGTGLTLT-AATCVIFAELLWTPGVLFQAEDR-- 496

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                + G   +V V YLI   T+DE +   + +K  +
Sbjct: 497 ---AHRYGQTSSVLVQYLIGMGTVDESIWNLVESKKNL 531


>gi|261417323|ref|YP_003251006.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373779|gb|ACX76524.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 861

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQ 102
             K+K ++ I+ +A      ++V   F   + ++                 +      I 
Sbjct: 526 SGKLKRIKEIVRQAKFENRKVLVFSFFLETIKKVCAYLNDSCMEPITGAVPVSHRQEIID 585

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +       +L     + G GLN+Q   N+++            Q I R       + G 
Sbjct: 586 AFEKSPAGTVLPLQINAGGLGLNIQ-AANVVILCEPQLKPSAEMQAISR-----AYRMGQ 639

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V VY L+  ++IDE +   L+ K  + +   +
Sbjct: 640 VRNVLVYRLLMLDSIDEKINTLLKFKKQVFNTFAD 674


>gi|302325414|gb|ADL24615.1| SNF2/helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 864

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQ 102
             K+K ++ I+ +A      ++V   F   + ++                 +      I 
Sbjct: 529 SGKLKRIKEIVRQAKFENRKVLVFSFFLETIKKVCAYLNDSCMEPITGAVPVSHRQEIID 588

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +       +L     + G GLN+Q   N+++            Q I R       + G 
Sbjct: 589 AFEKSPAGTVLPLQINAGGLGLNIQ-AANVVILCEPQLKPSAEMQAISR-----AYRMGQ 642

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V VY L+  ++IDE +   L+ K  + +   +
Sbjct: 643 VRNVLVYRLLMLDSIDEKINTLLKFKKQVFNTFAD 677


>gi|83318951|emb|CAJ38813.1| Lodestar protein [Platynereis dumerilii]
          Length = 1130

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 56   IKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            ++ ++ I +++   N +  ++   +   L  ++                    K    + 
Sbjct: 1009 LEKIKEIKKESPPGNPSKCVIVSQWTKMLDVIEYHLKSEGVQCCSIRGDMPPKKRSEIVD 1068

Query: 103  EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       ++     + G GLNL  GGN L+   L W+     Q  +RI      + G
Sbjct: 1069 LFNTPSSGPEVMLLSLRAGGVGLNL-IGGNHLIMVDLHWNPALEAQACDRI-----YRVG 1122

Query: 161  FKRAVFVY 168
             K+ VF++
Sbjct: 1123 QKKDVFIH 1130


>gi|256004417|ref|ZP_05429397.1| helicase domain protein [Clostridium thermocellum DSM 2360]
 gi|255991558|gb|EEU01660.1| helicase domain protein [Clostridium thermocellum DSM 2360]
 gi|316941350|gb|ADU75384.1| SNF2-related protein [Clostridium thermocellum DSM 1313]
          Length = 889

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 18/147 (12%)

Query: 53  DEKIKALEVIIEKANA----APIIVAYHF---NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
           D K++ L  II+   A      II+   F    S L +L K      ++     +I+E N
Sbjct: 454 DVKVEPLFEIIDDLFAEDRQRKIIIFTEFVATQSYLVKLLKDRGYSTSILNGSMSIEERN 513

Query: 106 E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                      +     + G GLNLQ+  N ++ + L W+  + +Q I R+      + G
Sbjct: 514 AVLHEFKTQTDILISTDAGGEGLNLQFS-NCIINYDLPWNPMKIEQRIGRVD-----RIG 567

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +R V VY  I  +T++  V   L  K
Sbjct: 568 QQRDVVVYNFILADTVENRVKTVLEEK 594


>gi|48696694|ref|YP_024988.1| superfamily II DNA/RNA helicase [Vibrio phage VP5]
 gi|40806157|gb|AAR92075.1| superfamily II DNA/RNA helicase [Vibrio phage VP5]
          Length = 489

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 26/218 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEK----HWKEVHDEKIKA- 58
            + +     +  G+ +       +  +  Q+  G   + D++           + K+ A 
Sbjct: 271 KELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKMDAM 330

Query: 59  LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD--------KDPCTIQEWNE 106
           LE I +    A +I+   F +++     RL++ +     ++            +I  + +
Sbjct: 331 LEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQD 390

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P     A+  + G G+ L        ++S  + LE+  Q        R  + G +  
Sbjct: 391 SSDPSRFFVANQQTAGMGITLTI-ATFAYYYSNSFSLEQRLQ-----SEDRNHRKGQRNV 444

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +  +   D +V + L++K  +  L+   L++  
Sbjct: 445 CTYIDIWCKADADLMVGRALKSKKDLAVLVDEELQRRI 482


>gi|288553361|ref|YP_003425296.1| Snf2/Rad54 family helicase [Bacillus pseudofirmus OF4]
 gi|288544521|gb|ADC48404.1| Snf2/Rad54 family helicase [Bacillus pseudofirmus OF4]
          Length = 560

 Score = 68.4 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 15/150 (10%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWN 105
            K +    +++K N   +I+   + +    LQ    Q             +         
Sbjct: 353 AKAEKALELVKKINDK-VIIFTEYRATQLYLQWYLKQNGISSVPFRGGFKRGKKDWMRQL 411

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +     + G G+NLQ+  + ++ F L W+    +Q I RI      + G K  V
Sbjct: 412 FESHAQVLIATEAGGEGINLQF-CSHIINFDLPWNPMRIEQRIGRI-----HRLGQKNDV 465

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y    ++T+++ +L+ L  K  + + ++
Sbjct: 466 HIYNFAVEDTVEQHILKLLYEKIHLFESVI 495


>gi|320590298|gb|EFX02741.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1240

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 67   NAAPI--IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLF 113
            +  PI  +V   + S L  +++A                       +  + ++  + ++ 
Sbjct: 1082 DEQPIKSVVFSGWTSHLDLIERALRDNGIAFCRLDGKMSRTARTQAMDTFRDDPSVHVIL 1141

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL   GN +      ++     Q I+R+      + G KR V     I  
Sbjct: 1142 VSIMAGGLGLNLT-AGNYVYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVHTVRFIMN 1195

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
             + +E +L+    K  + +L LN
Sbjct: 1196 RSFEERMLEIQADKIKLANLSLN 1218


>gi|255079200|ref|XP_002503180.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518446|gb|ACO64438.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1345

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 40/185 (21%)

Query: 26  ASKTVKCLQL---ANGAVY---YDEEKHWKEVHD-----EKIKALEVII--EKANAAPII 72
            +   +C++L    N        D+   W+   D      K+  L+ ++   +A    ++
Sbjct: 787 LALQNRCMELRKVCNHPALNYPTDKGGEWRTGEDLVRTCGKLWMLDRMLIKLRAAGHRVL 846

Query: 73  VAYHFNSDLARLQKAFP----------------QGRT-LDKDPCTIQEWNEG--KIPLLF 113
           +       L  L+                     G T LD     I  +N    K  +  
Sbjct: 847 LFSTMTKLLDLLETYLKWRMTTPAGEGLEWCRIDGSTALDLREEAITAFNAPGSKKFIFL 906

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNLQ   + +V +    + +  +Q + R       + G +R V V ++ A 
Sbjct: 907 LSIRAAGRGLNLQT-ADTVVVYDPDPNPKNEEQAVAR-----SHRIGQRREVRVLHMEA- 959

Query: 174 NTIDE 178
             +DE
Sbjct: 960 -VMDE 963


>gi|170061901|ref|XP_001866436.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880007|gb|EDS43390.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 706

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK-IPLLFAH 115
                ++  H    L  + +   + +            D     + ++            
Sbjct: 504 EGQKFLIFAHHIKMLDAVSRELDKLKVDHIRIDGTTRSDVRSELVNKFQTKDACRAAILS 563

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +C  G+ L     +++F  L W+     Q       +R  + G + AV V YL+A+ T
Sbjct: 564 LKACNAGITLT-AAQLVIFAELDWNPSTLAQA-----ESRAHRIGQEGAVLVRYLLAKGT 617

Query: 176 IDELVLQRLRTKSTI 190
            D+++   L+ K T+
Sbjct: 618 ADDIIWTMLQKKQTV 632


>gi|118403613|ref|NP_001072923.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|123908803|sp|Q0P4U8|SMAL1_XENTR RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|112418502|gb|AAI21898.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Xenopus (Silurana)
           tropicalis]
          Length = 942

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRT 93
            +  +      ++ +  ++E       +V  H    L  + +   +             +
Sbjct: 706 NRTAEAKIRSVLEYIMDLLES-GREKFLVFAHHKLVLDHICEELGKKDVPYIRIDGNTSS 764

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+     +     K  +      +   GL L    +++VF  L+W+     Q  +R+  
Sbjct: 765 ADRQSLCHKFQMSEKSCVAVLSITAANMGLTL-SSADLVVFAELFWNPGVLIQAEDRV-- 821

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI--QDLLLNA 197
               + G   +V ++YL+A+ T D+ +   ++ K  +  Q  L  A
Sbjct: 822 ---HRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEA 864


>gi|297624923|ref|YP_003706357.1| helicase domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297166103|gb|ADI15814.1| helicase domain protein [Truepera radiovictrix DSM 17093]
          Length = 1091

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 53  DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQ 102
           D K+  L+ I++   N   +++       L  + +   +         G    ++    +
Sbjct: 467 DRKLTELQKILQSLPNGEKLLIFTEHKDTLTFIMRVLGKRGYTATSIDGSMRLEERIAAE 526

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                   ++ A   + G G+NLQ+  +++V + + W+    +Q + R+      + G +
Sbjct: 527 RAFRDSCRVMVA-TEAAGEGINLQF-CSVMVNYDIPWNPTRLEQRMGRV-----HRYGQR 579

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
             V +Y L+AQ T +  VL RL TK
Sbjct: 580 YDVRIYNLVAQGTREGDVLGRLLTK 604


>gi|313681099|ref|YP_004058838.1| helicase domain protein [Oceanithermus profundus DSM 14977]
 gi|313153814|gb|ADR37665.1| helicase domain protein [Oceanithermus profundus DSM 14977]
          Length = 1133

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 39/202 (19%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +REL  ++           +   +  +LA   +   +++ W+E+   ++   E I     
Sbjct: 448 KRELELEI-----------ASLERLEKLARRVLQAGQDRKWQEL--ARLMGTEEI----K 490

Query: 68  AAPIIVAYHFNSDLARLQKA--------------FPQGRTLDKDPCTIQEWNEGKIPLLF 113
              +++       L  L+                    R  ++     +  N   + +L 
Sbjct: 491 GRKLVIFTEHRDTLDYLRNRLHTFLGNEDALVTIHGGMRREERHHAQAEFTNNKDVLVLL 550

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A   + G G+NLQ   ++L+ + + W+    +Q   RI      + G      ++ L+A+
Sbjct: 551 A-TDAAGEGINLQQ-AHLLINYDIPWNPNRLEQRFGRI-----HRIGQTEVCHMWNLVAR 603

Query: 174 NTIDELVLQRLRTK-STIQDLL 194
            T +  V   L  K     D L
Sbjct: 604 GTREGDVFALLLKKLEAAADAL 625


>gi|315645021|ref|ZP_07898147.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315279442|gb|EFU42747.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 94

 Score = 68.0 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL    N ++ +  WW+     Q  +R+      + G  R V V+ LI+Q T++E + +
Sbjct: 1   MNLTR-ANHVLHYDRWWNPAVENQATDRVF-----RIGQHRNVQVHKLISQGTLEERIDE 54

Query: 183 RLRTKSTIQDLLL 195
            +  K  + + ++
Sbjct: 55  LIEQKKALSEQVV 67


>gi|154246918|ref|YP_001417876.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154161003|gb|ABS68219.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1167

 Score = 68.0 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 30/210 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSA---------SKTVKCLQ-LANGAVYYDEEKHWKE 50
           ++   ++ +E   +L+        +A          +T+K L+ +A G +    +  W +
Sbjct: 431 LRNIEEYGQEEIDELEDLISTGATTAETVEQLALEVETLKGLETMALGVLRSGVDTKWSQ 490

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-------------KAFPQGRTLDKD 97
           ++      L  I    N   +I+       L  L              +    G + ++ 
Sbjct: 491 LNRILDDDLM-IDSAGNRRKLIIFTEPKDTLHYLLDKVRARLGNPEAVEVIHGGVSREER 549

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ + + K  L+     + G G+NLQ G +++V + L W+  + +Q   RI      
Sbjct: 550 RKVVERFMQDKDMLVLIANDAAGEGVNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----H 603

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G      ++ L+A +T +  V  RL  K
Sbjct: 604 RIGQTEVCHLWNLVAADTREGEVYARLLEK 633


>gi|71410768|ref|XP_807662.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70871713|gb|EAN85811.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1060

 Score = 68.0 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 96  KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   T++ +N      +L     + G G+N+     +++               +R  + 
Sbjct: 691 ERENTLRSFNSLRGADVLLLSMKAGGVGINITSATRVIL------ADSGFNPADDRQAIG 744

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           R  + G  R VFVY L+   T++  + Q+   K  +   ++   +LK++ +
Sbjct: 745 RAYRYGQTRPVFVYRLVCYQTLEHRMFQQKVAKEWLFHTIVEEASLKRDAL 795


>gi|323136172|ref|ZP_08071254.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
 gi|322398246|gb|EFY00766.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
          Length = 1027

 Score = 68.0 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVA---YHFNSDLARLQKAFPQGRTLD---------K 96
               ++ A   I+    A     +V             L +A      +D         K
Sbjct: 808 GASARLSATFEILRRIAAKGERALVFIEHRQMQHRFIELARAEFGLSRIDLINGDTPIPK 867

Query: 97  DPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +  +      +    +L   P + G GL L    + ++  S WW+    +Q  +R+
Sbjct: 868 RQAIVNRFQQHLEEDRGFDILVLGPKAAGVGLTLTAATH-VIHLSRWWNPAVEEQCNDRV 926

Query: 152 GVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
                 + G  R V ++  +A      +N+ D L+   ++ K  +    L
Sbjct: 927 -----HRLGQTRPVSIHLPMAIHPGYRENSFDCLLQSLMQRKRKLASSAL 971


>gi|119192670|ref|XP_001246941.1| hypothetical protein CIMG_00712 [Coccidioides immitis RS]
          Length = 980

 Score = 68.0 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+E+  +  I +L +   + G GL+L       +   LWW+    QQ   R+      + 
Sbjct: 853 IEEFRTDPSIRVLISSLKAGGTGLSLTM-AEKCILIDLWWNEAMEQQAFCRLF-----RY 906

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           G K+ V +  +  +N+ID+ +      KS+
Sbjct: 907 GQKKEVEIVRITVKNSIDDRIQLIQNAKSS 936


>gi|297812227|ref|XP_002873997.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297319834|gb|EFH50256.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1260

 Score = 68.0 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 93   TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             L +    I ++ E   P  +L A   +C  G++L    + ++     W+  + +Q I R
Sbjct: 1117 ELFERGRVIDKFEEPGNPSRVLLASITACAEGISLT-AASRVIMLDSEWNPSKTKQAIAR 1175

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G ++ V+VY L+++ T++E   +R   K  +  ++ +
Sbjct: 1176 -----AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFS 1216


>gi|293373681|ref|ZP_06620028.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292631336|gb|EFF49967.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 695

 Score = 68.0 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 24  NSASKTVKCLQLANGAV--YYDEEKHWKEVHDEKI--KALEVIIEKANAAPIIVAYHFNS 79
           N    T   LQ     +    ++E+      + K   K L+ +  +      I+    N 
Sbjct: 506 NELVSTSARLQATIKFLDSIKEKEEKVIIFVERKETQKMLQKLCNERYG---IICKIING 562

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           D   + K     R       +I E+       ++   P + G GLN+    N ++ +S  
Sbjct: 563 DTPSIIKRHSFDR--QTRQASINEFQAVDGFNVIIMSPVAAGMGLNVT-AANHVIHYSRH 619

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA----QNTIDELVLQRLRTKSTIQDLL 194
           W+  +  Q  +R       + G  + V+VYY +A      T DE++   L  K+++    
Sbjct: 620 WNPAKESQATDR-----AYRIGQTKDVYVYYPMAVTSDIKTFDEILDDLLSRKTSLATST 674

Query: 195 L 195
           +
Sbjct: 675 I 675


>gi|76162997|gb|AAX30749.2| SJCHGC07413 protein [Schistosoma japonicum]
          Length = 70

 Score = 68.0 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +        G G+NL     +L+ +   W+     Q  ER       + G  R V +
Sbjct: 4   DIFVFLLTTRVGGLGVNLTSANRVLI-YDPDWNPTTDLQARERAW-----RIGQSRDVVI 57

Query: 168 YYLIAQNTI 176
           Y L+   T+
Sbjct: 58  YRLLTSGTV 66


>gi|299067109|emb|CBJ38305.1| putative Helicase domain protein [Ralstonia solanacearum CMR15]
          Length = 461

 Score = 68.0 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 21/181 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVII-------EKANAAPIIVAYHFNSDLARLQKAF 88
            NG ++  E K   E  + +  ++E  +             P I+    N +   L ++ 
Sbjct: 257 TNGMLFALEAKTLSERREARRTSMEDRVRECAKRVSAEPGQPWIIWCDLNDESDALTRSI 316

Query: 89  PQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      L++    ++ ++EGK  ++   P+  GHGLN Q+    + F  +    E
Sbjct: 317 EGAMEVRGSMDLEEKEDRLRAFSEGKARVIVTKPSIAGHGLNWQHAA-RMAFVGVTDSYE 375

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + Q + RI      + G KR   V+   ++   +  V+  L+ K      +  AL  ET
Sbjct: 376 AYYQAVRRIW-----RFGQKRDCHVHIFASK--AEGAVVANLKRKEREAAQMAEALSAET 428

Query: 203 I 203
            
Sbjct: 429 R 429


>gi|330870418|gb|EGH05127.1| SNF2-related:helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 101

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +     ++ G G NL    N + F  L W      Q  +R       + G  R 
Sbjct: 1   QDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQLRV 54

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V V   +A++TID+ + Q L  K  +   L++
Sbjct: 55  VVVKIPLAEDTIDQQLWQMLMDKRALASDLID 86


>gi|323704524|ref|ZP_08116102.1| helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535986|gb|EGB25759.1| helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 893

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 25/158 (15%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNE----GKIPLLFA 114
           +E +    +I+   F +    L+K   +       L+      +  N      K   +  
Sbjct: 467 MEHSEKPKVIIFTEFIATQEFLRKFLQEKGYSVAILNGTMSIEERNNAIDEFKKSADILV 526

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNLQ+  NI++ + L W+  + +Q I RI      + G KR V V   +  +
Sbjct: 527 STDAGGEGLNLQF-CNIMINYDLPWNPMKIEQRIGRID-----RIGQKRDVVVINYVLSD 580

Query: 175 TIDELVLQRLRTK----------STIQDLLLNALKKET 202
           TI+  V Q L  K            +QD +L++++ E 
Sbjct: 581 TIEFRVRQVLEEKLKIIFEQFGVDKMQD-ILDSVQSEM 617


>gi|242051685|ref|XP_002454988.1| hypothetical protein SORBIDRAFT_03g002565 [Sorghum bicolor]
 gi|241926963|gb|EES00108.1| hypothetical protein SORBIDRAFT_03g002565 [Sorghum bicolor]
          Length = 104

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++N   ++ ++     +    LN+    ++L+ + LWW+     Q ++R       
Sbjct: 13  KAVKDFNMVPEVTIIIMSLKAASLSLNMVAACHVLMLY-LWWNSTTEDQAMDR-----AH 66

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G    V V  L  ++T+++ +L     K
Sbjct: 67  RIGQTWVVMVSQLTIKDTLEDCILGLQEKK 96


>gi|295695496|ref|YP_003588734.1| SNF2-related protein [Bacillus tusciae DSM 2912]
 gi|295411098|gb|ADG05590.1| SNF2-related protein [Bacillus tusciae DSM 2912]
          Length = 688

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             K+  L  I+  A    +IV   + +    L +A          F  G T  +    + 
Sbjct: 482 SAKVAELIRIL-SAFGDKMIVFTKYRATQEILVRALRRRDFRVAEFHGGLTRKEKDREVA 540

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + E +  +        G G NLQ+  N +V F L W+    +Q I RI      + G  
Sbjct: 541 YFRE-EADV-LVSTEVGGEGRNLQF-CNGMVNFDLPWNPMAIEQRIGRI-----HRIGQT 592

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R VFVY L A +T++  +L  L  K  + +L++  +
Sbjct: 593 RDVFVYNLAALHTLEHHMLDVLDRKINLFELVVGEV 628


>gi|145610845|ref|XP_368376.2| hypothetical protein MGG_00868 [Magnaporthe oryzae 70-15]
 gi|145018188|gb|EDK02467.1| hypothetical protein MGG_00868 [Magnaporthe oryzae 70-15]
          Length = 861

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I+ + +   P ++F      G GLNLQ   N+++  ++WW     +Q  E     
Sbjct: 749 ERERVIRNFTDATGPRVMFVSRGVGGQGLNLQ-AANVVIQCNVWW-----KQSWEEHAWG 802

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R  + G  R VFVY + A+  +D    +R   K+    +++  + +E I
Sbjct: 803 RVHRPGQTRPVFVYQIEARCQVDAYKKERRDAKNETNSMIMERITREDI 851


>gi|48696652|ref|YP_024431.1| superfamily II DNA/RNA helicase [Vibrio phage VP2]
 gi|40950050|gb|AAR97641.1| superfamily II DNA/RNA helicase [Vibrio phage VP2]
          Length = 472

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 26/218 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEK----HWKEVHDEKIKA- 58
            + +     +  G+ +       +  +  Q+  G   + D++           + K+ A 
Sbjct: 254 KELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKMDAM 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD--------KDPCTIQEWNE 106
           LE I +    A +I+   F +++     RL++ +     ++            +I  + +
Sbjct: 314 LEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQD 373

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P     A+  + G G+ L        ++S  + LE+  Q        R  + G +  
Sbjct: 374 SSDPSRFFVANQQTAGMGITLTI-ATFAYYYSNSFSLEQRLQ-----SEDRNHRKGQRNV 427

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +  +   D +V + L++K  +  L+   L++  
Sbjct: 428 CTYIDIWCKADADLMVGRALKSKKDLAVLVDEELQRRI 465


>gi|312131273|ref|YP_003998613.1| snf2-related protein [Leadbetterella byssophila DSM 17132]
 gi|311907819|gb|ADQ18260.1| SNF2-related protein [Leadbetterella byssophila DSM 17132]
          Length = 773

 Score = 67.7 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 19/140 (13%)

Query: 69  APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPA 117
             +++   + + L ++                   +      + ++N   +  +      
Sbjct: 561 QKVLIFSEWLAVLDKIAIILQRNEIDFAVLTGNVPVKSRQKLVDQFNTDQRCRVFLC-TE 619

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTI 176
           + G GLNLQ   + ++ F L W+  +  Q I RI      + G K + + +  LI +++I
Sbjct: 620 TAGSGLNLQ-SADTVINFELPWNPAKKNQRIGRID-----RIGQKNSKLTIINLIMRDSI 673

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +  ++Q L+ K  + D +L 
Sbjct: 674 ETKLIQGLKLKQDLFDSILE 693


>gi|115387833|ref|XP_001211422.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114195506|gb|EAU37206.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 914

 Score = 67.7 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 42  YDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----RTLD 95
            D+     + +  KI  L   + +  +    I+   +   L  ++K          R   
Sbjct: 752 SDDSVFQPDGYSSKINMLVSDVQDSLDTTKSIIFSCWTRTLDLVEKHLRMADILFLRIDG 811

Query: 96  KDPCTIQ-----EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           K P  ++     ++N    + +L     + G GLNLQ   N +      W+     Q I 
Sbjct: 812 KTPPQVRQERLDKFNTTSTVAVLIMTTGTGGVGLNLQ-SVNRVFIVEPQWNPSVETQAIA 870

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R       + G ++ V V     Q +I+E +  +   K ++  +
Sbjct: 871 R-----AIRLGQEQTVSVIRYYVQGSIEEDMCSQQTRKLSLSKM 909


>gi|20219037|gb|AAM15781.1|AC104428_2 Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706352|gb|ABF94147.1| SNF2 domain-containing protein, putative, expressed [Oryza sativa
            Japonica Group]
          Length = 1197

 Score = 67.7 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPCTIQEWNE- 106
            + +A    ++V   +   L  L+K                   G T D+    +  +N  
Sbjct: 1014 LSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQREQAVHRFNNS 1073

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                + F    +CG G++L     I++              + R  + R  + G  + V+
Sbjct: 1074 PDARVFFGSIKACGEGISLVGASRIVILD------VHENPSVMRQAIGRAYRPGQSKMVY 1127

Query: 167  VYYLIAQNTIDEL 179
             Y L+A ++ +E 
Sbjct: 1128 CYRLVAADSPEED 1140


>gi|298712291|emb|CBJ26742.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1307

 Score = 67.7 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 50   EVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQG----RTL------- 94
             V + K+KAL   +   +A       +V   FNS L  L++  P+     RTL       
Sbjct: 1095 VVMETKLKALVEKLAGIHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRT 1154

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +         +    +      S   G+NL    N+ +              +E+  + 
Sbjct: 1155 QRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFL------LEPLLNLALEKQAIG 1208

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R  + G  R V V  L+ +++I+  +L  L+ K   
Sbjct: 1209 RVYRLGQTRPVTVTKLVLKDSIETRIL-ALQKKQAT 1243


>gi|195342588|ref|XP_002037882.1| GM18506 [Drosophila sechellia]
 gi|194132732|gb|EDW54300.1| GM18506 [Drosophila sechellia]
          Length = 592

 Score = 67.7 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGK 108
           L+ I+++      I+  H    +  +               G+T  D    ++  + +  
Sbjct: 365 LKTIVKEQ--KKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKS 422

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     I+VF  L W+     Q       +R  + G  + V  
Sbjct: 423 SCKVALLSLKACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVIC 476

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A NT D+++   L+ K  +
Sbjct: 477 RYLMAHNTADDIIWNMLKNKQEV 499


>gi|167629278|ref|YP_001679777.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592018|gb|ABZ83766.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
          Length = 581

 Score = 67.7 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKD 97
           K  H  K  AL  ++   N   +IV   F+     L +   +            + L+K+
Sbjct: 365 KVPHRAKADALVQLLRGLNDK-VIVFTGFSETHRYLVRRLTEAGFAVAQLHGGMKRLEKE 423

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                      +  +     +   G NLQ+    LV + L W+  + +Q I RI      
Sbjct: 424 EQVRYF---ADVAQVLLSTETGSEGRNLQF-CRCLVNYDLPWNPMQIEQRIGRI-----H 474

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G +R V++Y L AQ+T++  +L+ L  K  +  L++
Sbjct: 475 RIGQERDVYIYNLSAQDTLEAHMLELLDAKINMFQLVV 512


>gi|328697302|ref|XP_001945056.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Acyrthosiphon pisum]
          Length = 656

 Score = 67.7 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDP 98
              + K+ A+   I     +    IV  H    +  +               G+T  ++ 
Sbjct: 446 HTGEAKLPAICDYILNLLKDGKKFIVFAHHQKVINGICDVLENNETYYIRIDGKTSSEER 505

Query: 99  CTI-QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  ++    +  +      +   G+ L     +++F  L+W+     Q  +R      
Sbjct: 506 KCVCDQFQSEDMYRVAVLSICAANSGITLT-AAKLVIFAELYWNPGILTQAEDR-----A 559

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G    V + YL+A+ T D+ +   +++K
Sbjct: 560 HRIGQAETVTIQYLLAKGTADDHIWPLIQSK 590


>gi|309702945|emb|CBJ02276.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 286

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 36/45 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK 46
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+  
Sbjct: 241 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTG 285


>gi|298385364|ref|ZP_06994922.1| SNF2 family protein [Bacteroides sp. 1_1_14]
 gi|298261505|gb|EFI04371.1| SNF2 family protein [Bacteroides sp. 1_1_14]
          Length = 2373

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T+ K     ++ N G++ ++     + G G+N+Q   + L+         ++ Q   R
Sbjct: 729 GMTVKKKLEIFEKVNRGEVRVILGSTFTLGTGVNIQERLHTLIHLDAPNRPMDYTQRNGR 788

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I           + V +     ++++D    QRL+TK  I D ++N 
Sbjct: 789 ILRQGNLHKDMNKPVRILRFGVEDSLDVTAYQRLKTKGAIADSIMNG 835


>gi|194856372|ref|XP_001968736.1| GG25032 [Drosophila erecta]
 gi|190660603|gb|EDV57795.1| GG25032 [Drosophila erecta]
          Length = 754

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE--WNEG 107
           L+ ++++      I+  H    +  +               G+T         +   N+ 
Sbjct: 527 LKTLVKEQ--KKFIIFAHHRVMMDAISDCLSGLKIHYIRIDGQTRSDLRSDFVDTFQNKS 584

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     I+VF  L W+     Q       +R  + G  + V  
Sbjct: 585 SCKVALLSLKACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVIC 638

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A  T D+ +   L+ K  +
Sbjct: 639 RYLMAHKTADDTIWNMLKNKQEV 661


>gi|126462608|ref|YP_001043722.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104272|gb|ABN76950.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 1170

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 21/185 (11%)

Query: 17  GENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            E +E      +T+K L+ +A   +   ++  W ++       L  I    N   +I+  
Sbjct: 455 AETVEQLEIEVQTLKGLEIMALDVLRSGKDTKWTQLDRILDDELM-IDSDGNRRKLIIFT 513

Query: 76  HFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                L  L +                 G T ++    ++ + + +  L+     + G G
Sbjct: 514 EPKDTLHYLLEKIRARLGRPDAVEVIHGGVTREERRKVVERFMQDRDMLVLIANDAAGEG 573

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ G +++V + L W+  + +Q   RI      + G      ++ L+A +T +  V  
Sbjct: 574 VNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----HRIGQTEVCHLWNLVAADTREGEVYA 627

Query: 183 RLRTK 187
           RL  K
Sbjct: 628 RLLEK 632


>gi|170027903|ref|XP_001841836.1| DNA repair protein RAD16 [Culex quinquefasciatus]
 gi|167868306|gb|EDS31689.1| DNA repair protein RAD16 [Culex quinquefasciatus]
          Length = 1276

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
               II+  H++  L  L +A          +     K     +++  G I  L     + 
Sbjct: 1124 DVKIIIFSHWDPILFYLAQALDTNSVTYRLKSAKFYKHIEEFKDYTNG-ITCLLLPLKAG 1182

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    + +       +  E  Q + R+      + G  +  FV+  I QNTI+E 
Sbjct: 1183 SKGLNLTEATH-VFLVEPILNPGEELQAVGRV-----HRIGQTKPTFVHRFIVQNTIEET 1236

Query: 180  VLQRLRT 186
            + + ++ 
Sbjct: 1237 IHRTVQA 1243


>gi|146095356|ref|XP_001467556.1| helicase  [Leishmania infantum JPCM5]
 gi|134071921|emb|CAM70616.1| helicase-like protein [Leishmania infantum JPCM5]
          Length = 908

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + L      + G GLNL  G + ++     ++     Q ++R       + G +  V +Y
Sbjct: 742 VFLFLISTRAGGTGLNLT-GADTVILLDGDFNPHNDLQAVDRC-----HRIGQRNPVALY 795

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLL 195
            L++ +T+ DE     +  K  ++ L+L
Sbjct: 796 RLVSPHTVEDERHSGIVDRKLKLEHLVL 823


>gi|66822083|ref|XP_644396.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|66823325|ref|XP_645017.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60472519|gb|EAL70471.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60473216|gb|EAL71164.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1518

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 27/155 (17%)

Query: 46   KHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFN-------------SDLARLQKAF 88
            K  K +   K++     L+ I+E       IV   FN              +L+R+ K +
Sbjct: 1241 KEPKLIDCAKLEYLIMRLKEIVEI--GEKCIVFSAFNDTLKDIVWTVSRIPELSRVYKIY 1298

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPAS--CGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                TL +    + ++             S    +GLN+    N ++F    W   + QQ
Sbjct: 1299 MTELTLKQRANIVSDFQTKDSEFNIIIMNSDLAAYGLNIT-AANHIIFVDPIWFASKEQQ 1357

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
             I+R       + G  + VFV  LI +N+ ++ ++
Sbjct: 1358 SIKR-----SHRIGQTKPVFVEKLIIENSCEQQLI 1387


>gi|301321575|gb|ADK68965.1| Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
          Length = 1136

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 33/208 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++  E    L+ + ++A  +A        + ++LA+  +    +K  +   D K   L 
Sbjct: 420 DEYNAEELEQLEEDVMDAATAAQTVEELNAELVELAD--LIATAKKVREAGTDRKWTELS 477

Query: 61  VIIEK------ANAAP--IIVAYHFNSDLARLQ-------------KAFPQGRTLDKDPC 99
            I++       +N  P   I+       L  LQ             KA   G    +   
Sbjct: 478 TILQDNALVTDSNGWPRKFIIFTEHRDTLDYLQSKIGSLLGKPDSVKAIHGGVRRGERRV 537

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +E+ + +   +     + G GLNLQ   +++V + L W+    +Q   RI      + 
Sbjct: 538 ITEEFTKNRDVQILIATDAAGEGLNLQ-AAHLMVNYDLPWNPNRIEQRFGRI-----HRI 591

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G +    ++ L+A NT +  V  RL  K
Sbjct: 592 GQEEVCRLWNLVASNTREGEVFTRLLEK 619


>gi|269793095|ref|YP_003317999.1| helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100730|gb|ACZ19717.1| helicase domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 969

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 50  EVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL 94
           +  D K +AL   I      E      ++V   F      L +   +         G   
Sbjct: 473 QGPDAKAEALLDWIYRLQAEEGDPDLKVLVFTEFVPTQEMLMRFLTERGITVVCLNGSMD 532

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++   +Q+     + +      + G GLNLQ+  ++++ + + W+    +Q I R+   
Sbjct: 533 LEERKRVQDAFAKDVRI-LISTDAGGEGLNLQF-CHVVINYDIPWNPMRLEQRIGRVD-- 588

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G    V     + +++++  V + L  K  +
Sbjct: 589 ---RIGQTHTVRAINFVFEDSVEHRVREVLEEKLAV 621


>gi|157869750|ref|XP_001683426.1| hypothetical protein [Leishmania major strain Friedlin]
          Length = 471

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNLQ   + +    + ++ +   Q + R+      + G  + V V+ LI
Sbjct: 124 FLISKVAGGAGLNLQ-AADTVFLLDVDYNPQRDAQALSRV-----YRVGQSKEVRVFRLI 177

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + I+  ++     K  +   ++ A
Sbjct: 178 IDHAIEHDIVAIHEAKDDLGRAVVQA 203


>gi|324505946|gb|ADY42546.1| SMARCAL1-like protein [Ascaris suum]
          Length = 696

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A++ A+      Q   G  Y       K V    +       E A    ++V  H    L
Sbjct: 481 AYHGAADKDTKHQCLVGYYYETGIAKAKSVASHIVDNF--FYEGAPRRKVLVFAHHQVVL 538

Query: 82  ARL-QKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             +      +G           +  ++        +  + +      + G G+ L     
Sbjct: 539 DTISMYVTKKGLRSIRIDGTTASKSREEQCRLFQEDDDVVVAILSMTAAGLGITLT-AAT 597

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++VF  L W+    +Q  +R       + G   +VFV YL+A  T D+++   ++ K  +
Sbjct: 598 VVVFAELHWNPGTLKQAEDR-----AHRVGQTDSVFVQYLLANRTADDVMWPLIQRKLDV 652


>gi|218847810|ref|YP_002454516.1| RecQ helicase, putative [Bacillus cereus G9842]
 gi|218546312|gb|ACK98704.1| RecQ helicase, putative [Bacillus cereus G9842]
          Length = 468

 Score = 67.7 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKD-PCTIQ 102
             K++ L+     ++     + +++   +      + ++ PQ     G+  D++    I+
Sbjct: 286 SPKLEQLKTFTKQLLNDEPNSKVVIFTEYERMARIIYESLPQSVLYTGQISDREKNTVIE 345

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + E      F    +   GLNLQ   N +V F L +   E +Q   RI      + G  
Sbjct: 346 RFREDPHTRFFISTRAGSTGLNLQV-ANYMVHFDLPYTATELEQRNGRID-----RTGNN 399

Query: 163 -RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + +YY I  ++ DE +LQ L  KS +   +L  
Sbjct: 400 FSNITMYYYIMSDSYDEHMLQLLFKKSELAKEILTG 435


>gi|269860253|ref|XP_002649849.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066790|gb|EED44262.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 878

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 28/203 (13%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA-----A 69
           L+ + I    +         +   A +       + +   K  AL  II           
Sbjct: 663 LEDKEINYSTAKHHLAILKDILKAASHPMHFSKTESIISTKTMALFDIINMCGGFENMRN 722

Query: 70  PIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQ----EWNEGKIPLL 112
            +I+ +     L  +     +                ++ +   I     E+N     +L
Sbjct: 723 KMIIFFQNKKTLDIVYNELKKNNVNLKVLSNDIKYNEINNNKTDINIIANEFNNSDATIL 782

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            +     G         NI+VF+   W+     Q ++R       + G K+ V V  LI 
Sbjct: 783 LSTTLLGGL-GLNLTMVNIVVFYEHDWNPFNDLQAMDR-----AHRLGQKQIVNVIRLIV 836

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           ++TI+E V+     K  I + ++
Sbjct: 837 KDTIEEKVMNYQNFKKYISEHII 859


>gi|119490437|ref|ZP_01622898.1| hypothetical protein L8106_27294 [Lyngbya sp. PCC 8106]
 gi|119453908|gb|EAW35063.1| hypothetical protein L8106_27294 [Lyngbya sp. PCC 8106]
          Length = 1140

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 27/161 (16%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN-------AAPIIVAYHFNSDLARLQKAFPQ------- 90
           ++  +   + K+  L+ +++++           +++       L  L++   Q       
Sbjct: 461 QETIELGTERKLNELQNLLKRSEFDELSEGEGRLLIFTEHRDTLQYLKQNLQQWGYSTCE 520

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +D+           +I        + G G+NLQ+   ++V + + W+    +Q
Sbjct: 521 IHGGMNVIDRKTAQKNFQFNKQI---CIATEAAGEGINLQF-CRLMVNYDIPWNPNRLEQ 576

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + RI      + G KR V+++  +A NT++  VL++L  K
Sbjct: 577 RMGRI-----HRIGQKRDVYIFNFVAVNTVEGRVLEKLLKK 612


>gi|297736548|emb|CBI25419.3| unnamed protein product [Vitis vinifera]
          Length = 1635

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            F RE   +L+    +     SK    L L N  +   E+      +   I     I +K 
Sbjct: 1374 FSREELLELKKHKDD-VKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKL 1432

Query: 67   ----NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                    ++V      DL      F +GR +D+          G   +L A   +C  G
Sbjct: 1433 YKWKKGEDVLV---LQGDLE----LFERGRVMDQFEEP-----GGASKVLLASITACAEG 1480

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            ++L    + ++     W+  + +Q + R       + G +R V+VY L+  +T++E    
Sbjct: 1481 ISLT-AASRVILLDTEWNPSKQKQAVAR-----AFRPGQERVVYVYQLLETDTLEEEKNS 1534

Query: 183  RLRTKSTIQDLLLN 196
            R   K  +  ++ +
Sbjct: 1535 RTNWKEWVSSMIFS 1548


>gi|222475692|ref|YP_002564213.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454063|gb|ACM58327.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 584

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 54  EKIKALEVIIEKANAA----PIIVAYHFNSD----LARLQ------KAFPQGRTLDKDPC 99
            K + L  I+E+A        +IV   F +     L RL        AF  G +  +   
Sbjct: 364 TKQERLLDIVEEARETVEMGRVIVFTQFRATQRQVLDRLASEGYTVHAFHGGHSSSEKEQ 423

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++++ E G I        +   G NLQ+  N+LV   L W+    +Q I R+      +
Sbjct: 424 IVEDFEEEGGI---LVSTDAMSEGRNLQF-CNLLVNLGLSWNPMRMEQRIGRV-----HR 474

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G KR VFV+ +  + T++E VL+RL  K  +
Sbjct: 475 IGQKRDVFVFNMALKGTVEEYVLERLYHKIDL 506


>gi|195576640|ref|XP_002078183.1| GD23310 [Drosophila simulans]
 gi|194190192|gb|EDX03768.1| GD23310 [Drosophila simulans]
          Length = 755

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGK 108
           L+ I+++      I+  H    +  +               G+T  D    ++  + +  
Sbjct: 528 LKTIVKEQ--KKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKS 585

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     I+VF  L W+     Q       +R  + G  + V  
Sbjct: 586 SCKVALLSLKACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVIC 639

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A NT D+++   L+ K  +
Sbjct: 640 RYLMAHNTADDIIWNMLKNKQEV 662


>gi|189036176|gb|ACD75438.1| AMDV4_9 [uncultured virus]
          Length = 542

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEG 107
           I+ +E ++E  N   I+V  H +  +  + + F     +        +++    +  N+ 
Sbjct: 394 IEHIENVLE--NEDKIVVFAHHHDVVDAIYEKFKDISVVATGNESLNERNDAVNKFQNDP 451

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+ L    + ++F  + W   +  Q  +R+      + G K  V V
Sbjct: 452 SCKIFIGSIQAMGVGITLT-ASSTVIFTEIEWRPGDLTQAEDRL-----HRIGQKSTVLV 505

Query: 168 YYLIAQNTID 177
            YL+  ++ID
Sbjct: 506 QYLVVNDSID 515


>gi|147841648|emb|CAN75315.1| hypothetical protein VITISV_024158 [Vitis vinifera]
          Length = 1904

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            F RE   +L+    +     SK    L L N  +   E+      +   I     I +K 
Sbjct: 1630 FSREELLELKKHKDD-VKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKL 1688

Query: 67   ----NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                    ++V      DL      F +GR +D+          G   +L A   +C  G
Sbjct: 1689 YKWKKGEDVLV---LQGDLE----LFERGRVMDQFEEP-----GGASKVLLASITACAEG 1736

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            ++L    + ++     W+  + +Q + R       + G +R V+VY L+  +T++E    
Sbjct: 1737 ISLT-AASRVILLDTEWNPSKQKQAVAR-----AFRPGQERVVYVYQLLETDTLEEEKNS 1790

Query: 183  RLRTKSTIQDLLLN 196
            R   K  +  ++ +
Sbjct: 1791 RTNWKEWVSSMIFS 1804


>gi|302839751|ref|XP_002951432.1| hypothetical protein VOLCADRAFT_91908 [Volvox carteri f. nagariensis]
 gi|300263407|gb|EFJ47608.1| hypothetical protein VOLCADRAFT_91908 [Volvox carteri f. nagariensis]
          Length = 1592

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            L +       L+     I+++N     I +      + G GLNLQ   + ++ +    + 
Sbjct: 1065 LFRRIDGSTPLEIREDAIRDFNRPDSDIFIFLLSIRAAGRGLNLQTS-DTVIIYDPDPNP 1123

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            +  +Q I R       + G  + V V +  A
Sbjct: 1124 KNEEQAIAR-----SHRIGQTKEVRVVHFEA 1149


>gi|124801328|ref|XP_001349665.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845262|gb|AAC71935.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
          Length = 1997

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 88   FPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +    D      +  N G     +      S   GLNLQ   + ++ F   ++  +  
Sbjct: 1380 LKKEEINDFQIMDDKNVNGGNQDAMIFILSTRSGSLGLNLQT-ADTVIIFDSDFNPHQDI 1438

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q + R       + G K  V V+  I  + ++ELV ++ + K +I D ++ A
Sbjct: 1439 QAMCRC-----HRIGQKNVVKVFRFITLSGVEELVFKKAQHKLSINDKVIQA 1485


>gi|307564893|ref|ZP_07627418.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346429|gb|EFN91741.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 3762

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%)

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               G T+ K      + N G++ ++     + G G+N+Q   + L+         ++ Q 
Sbjct: 1913 MKSGMTVKKKLEIFDKVNRGEVRVIMGSTFTLGTGVNIQERLHTLIHLDAPNRPMDYTQR 1972

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI           + V V     ++++D    QRL+TK  I D ++N 
Sbjct: 1973 NGRILRQGNIHKEMNKPVRVLRFGVEDSLDVTAYQRLKTKGAIADSIMNG 2022


>gi|73536510|ref|XP_847679.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438592|emb|CBZ12351.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1576

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
           I +     +++   + S L  + +   +               ++  C  +  N     +
Sbjct: 501 IVREQREKVVIFSQYLSHLRLMGQLLAREGISAPSLTGAASDAERCRCISELQNNDACRV 560

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+ L    +  +   + W+  +  Q   R+      + G  R V +Y L 
Sbjct: 561 LLCSVRAGGVGIKLT-AASHCILLDVSWNPTDDMQATYRL-----YRYGQLRPVNIYRLA 614

Query: 172 AQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
              T + +V      +S +Q  +  ++  +++  H
Sbjct: 615 TWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|195472837|ref|XP_002088705.1| GE11268 [Drosophila yakuba]
 gi|194174806|gb|EDW88417.1| GE11268 [Drosophila yakuba]
          Length = 755

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 17/133 (12%)

Query: 69  APIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWNEGK-IPLLFAHPA 117
              I+  H    +  +               G+T  D    ++  + +     +      
Sbjct: 536 KKFIIFAHHRVMMDAISDCLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKSSCKVALLSLK 595

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +C  G+ L     I+VF  L W+     Q       +R  + G  + V   YL+A NT D
Sbjct: 596 ACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVICRYLMAHNTAD 649

Query: 178 ELVLQRLRTKSTI 190
           + +   L+ K  +
Sbjct: 650 DTIWNMLKNKQEV 662


>gi|195127015|ref|XP_002007964.1| GI12091 [Drosophila mojavensis]
 gi|193919573|gb|EDW18440.1| GI12091 [Drosophila mojavensis]
          Length = 1284

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 18/157 (11%)

Query: 45   EKHWKEVHDEKIKALEVII-------EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
                      KI  +  ++          N   I++   + + L  +  A  Q     + 
Sbjct: 1106 SSEVVGDFSTKITYIVDLVLKIKSESSDKNQEKILIFSQWPTILNHIASALSQNSIEYRS 1165

Query: 97   --DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  I E+ +    +  L    A    GLNL    + +          E  Q I R+ 
Sbjct: 1166 KFTNRDIDEFKDADRNVTCLLMPIARGSKGLNLIEATH-VFLVEPILTPGEELQAIGRV- 1223

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                 + G  +   V+  I   TI+E +++ +++   
Sbjct: 1224 ----HRFGQTKPTTVHRFIVNGTIEENIMKLIKSADD 1256


>gi|148226355|ref|NP_001089668.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Xenopus laevis]
 gi|123903207|sp|Q498E7|SMAL1_XENLA RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|71681279|gb|AAI00246.1| Smarcal1 protein [Xenopus laevis]
          Length = 960

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 51  VHDEKI-KALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDK 96
             + KI   LE II+  ++     +V  H    L  + +   +               D+
Sbjct: 726 TAEAKIRSVLEYIIDLLESGREKFLVFAHHKLVLDNICEELGKKEVPYIRIDGNTSSADR 785

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +     K  +      +   GL L    +++VF  L+W+     Q  +R+     
Sbjct: 786 QSLCHKFQFSEKSCVAVLSITAANMGLTL-SSADLVVFAELFWNPGVLIQAEDRV----- 839

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI--QDLLLNA 197
            + G   +V ++YL+A+ T D+ +   ++ K  +  Q  L  A
Sbjct: 840 HRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEA 882


>gi|223940612|ref|ZP_03632456.1| SNF2-related protein [bacterium Ellin514]
 gi|223890730|gb|EEF57247.1| SNF2-related protein [bacterium Ellin514]
          Length = 819

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E+      LL  H  S   G NLQ+  + LV F L W+  E +Q I R+      + G 
Sbjct: 667 EEFRRRGGALLLTH--SGTEGRNLQFS-HRLVNFDLPWNPMEIEQRIGRL-----HRLGQ 718

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R V +Y L+   T+ E +L+ L+ K  + ++++
Sbjct: 719 QRPVHIYNLVYAGTLQEQLLEILQEKLNLFEVVV 752


>gi|157819469|ref|NP_001100940.1| E3 ubiquitin-protein ligase SHPRH [Rattus norvegicus]
 gi|149039552|gb|EDL93714.1| SNF2 histone linker PHD RING helicase (predicted) [Rattus norvegicus]
          Length = 1701

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +++   K  H  K++A    L  I  K   A  +V   +   L  + KA   
Sbjct: 1509 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLKDPGAKALVFSTWQDVLDIISKALTD 1568

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1569 NNMGFTQISRIKTFQENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1627

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1628 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1666


>gi|225448562|ref|XP_002273775.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1306

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            F RE   +L+    +     SK    L L N  +   E+      +   I     I +K 
Sbjct: 1032 FSREELLELKKHKDD-VKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKL 1090

Query: 67   ----NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                    ++V      DL      F +GR +D+          G   +L A   +C  G
Sbjct: 1091 YKWKKGEDVLV---LQGDLE----LFERGRVMDQFEEP-----GGASKVLLASITACAEG 1138

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            ++L    + ++     W+  + +Q + R       + G +R V+VY L+  +T++E    
Sbjct: 1139 ISLT-AASRVILLDTEWNPSKQKQAVAR-----AFRPGQERVVYVYQLLETDTLEEEKNS 1192

Query: 183  RLRTKSTIQDLLLN 196
            R   K  +  ++ +
Sbjct: 1193 RTNWKEWVSSMIFS 1206


>gi|255293151|dbj|BAH90243.1| DEAD/DEAH box helicase-like protein [uncultured bacterium]
          Length = 1170

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 21/185 (11%)

Query: 17  GENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            E +E      +T+K L+ +A G +    +  W +++      L  I    N   +I+  
Sbjct: 456 AETVEQLALEVETLKGLESMALGVLRSGVDTKWSQLNRILDDDLM-IDAAGNRRKLIIFT 514

Query: 76  HFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                L  L              +    G + ++    ++ + + K  L+     + G G
Sbjct: 515 EPKDTLHYLLDKVRARLGNTQAVEVIHGGVSREERRKVVERFMQDKDMLVLIANDAAGEG 574

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ G +++V + L W+  + +Q   RI      + G      ++ L+A +T +  V  
Sbjct: 575 VNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----HRIGQTEVCHLWNLVAADTREGEVYA 628

Query: 183 RLRTK 187
           RL  K
Sbjct: 629 RLLEK 633


>gi|239817547|ref|YP_002946457.1| SNF2-related protein [Variovorax paradoxus S110]
 gi|239804124|gb|ACS21191.1| SNF2-related protein [Variovorax paradoxus S110]
          Length = 1291

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 24/170 (14%)

Query: 44   EEKHWKEVHDEKIKALEV---IIEKANAAPII---------VAYHFNSDLARLQKAFPQG 91
              +     +  K++ L     ++E A    I+           Y+F  +   ++     G
Sbjct: 945  SGRDVHLRNSPKLQWLLERLVVVEAAQEKAIVFTELRETQAALYYFLKETFGIRPFIING 1004

Query: 92   RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  +    I +++      ++     + G GLN+    N +  F+  W+  +  Q  +R
Sbjct: 1005 DSQGRQG-YIDKFSAKSGFDVIILSTLAAGAGLNVT-AANHVFHFTRAWNPSKESQATDR 1062

Query: 151  IGVTRQRQAGFKRAVFVYY--LIAQN--TIDELVLQRLRTKSTIQDLLLN 196
                   + G +R VFVY   ++A N  T +  + Q L+ K+ +    L+
Sbjct: 1063 -----AFRIGQERDVFVYCPTVVADNFRTFELRLDQLLKRKAGLAGSTLD 1107


>gi|242018235|ref|XP_002429584.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514551|gb|EEB16846.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 657

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPC 99
           + K+ A+   I  +  N+   +V  H ++ L  +       +             ++   
Sbjct: 435 NAKLSAVCEYIGDKLENSNKFLVFAHHSNVLDGICDLLNNKKVDYIRIDGTVSSENRQIK 494

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  +     +      +   GL L     +++F  L+W+  E  Q  +R       + 
Sbjct: 495 CQEFQSNPNCKVAVLSLKAANTGLTLTE-AQLVIFAELYWNPGELIQAEDR-----AHRI 548

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G + +V V YLIA+ T D+ +   ++ K
Sbjct: 549 GQRDSVLVEYLIAKGTADDHLWSLVQLK 576


>gi|15241352|ref|NP_197542.1| CHR42 (chromatin remodeling 42); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332005458|gb|AED92841.1| chromatin remodeling 42 [Arabidopsis thaliana]
          Length = 1261

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYH-------FNSDLARLQKAFPQGRTLDKDP 98
            KH  +   + +  L +I        I++  H       F      + + + +GR +    
Sbjct: 1056 KHDAKKGSKVMFVLNLIFRVVKREKILIFCHNIAPIRMFTELFENIFR-WQRGREILTLT 1114

Query: 99   CTIQEWNEGKI-----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              ++ +  G++            +L A   +C  G++L    + ++     W+  + +Q 
Sbjct: 1115 GDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLT-AASRVIMLDSEWNPSKTKQA 1173

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R       + G ++ V+VY L+++ T++E   +R   K  +  ++ +
Sbjct: 1174 IAR-----AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIFS 1217


>gi|320170024|gb|EFW46923.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2080

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)

Query: 52   HDEKIKALEV-IIE---KANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCTIQE 103
               KI AL   +IE   +      +V   +   L+R+ +A         T+         
Sbjct: 1913 SSTKIDALIRYLIELERQNPGTKSVVFSQWGHVLSRVGEALQLQGIGFTTIQTGKDAASL 1972

Query: 104  WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++   K+ +   H      GL L      +       +     Q I R+      + G  
Sbjct: 1973 FHSNPKVTVFLLHSRHKSSGLTL-VAATHVFLMDPIINPAVELQAINRV-----HRIGQT 2026

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKST 189
                V+  I +NTI++ VL+    + T
Sbjct: 2027 AETHVHRFIVENTIEQQVLRLAVGQDT 2053


>gi|328876957|gb|EGG25320.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1814

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDKDPCTIQEWN--------EGKIPLL 112
            I +K     +I+   ++  L  + +A  + G   ++     Q++         +  I +L
Sbjct: 1658 IFDKDPLQKVILFSQWSEVLEIVSRALAENGIVFERGDKGGQQFQASVALFRKDPTIQVL 1717

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                    +GLN+    ++ +      +     Q I RI      + G ++  +++  I 
Sbjct: 1718 LLPTKRGANGLNIIEATHVFI-VEPLLNPAVEAQAINRI-----HRFGQQKECYIHRFII 1771

Query: 173  QNTIDELVLQRLRTKSTIQDL 193
            +NTI+E ++Q LR K+  Q  
Sbjct: 1772 KNTIEEKIVQ-LREKNNNQSD 1791


>gi|164658682|ref|XP_001730466.1| hypothetical protein MGL_2262 [Malassezia globosa CBS 7966]
 gi|159104362|gb|EDP43252.1| hypothetical protein MGL_2262 [Malassezia globosa CBS 7966]
          Length = 1014

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 47/182 (25%)

Query: 53  DEKIKALEV-IIEKANAAPI---IVAYHFNSDLARLQKAFPQ---------GRTLDKD-P 98
             K+ AL   + E   + P    ++   F   L  +Q    Q         GRT  K+  
Sbjct: 815 STKLNALMQQLAELTKSDPTCKGVIFSQFTGFLNLIQAHLVQRQYAFVRLDGRTPQKERE 874

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQ-----------YGGNILVFFSLWWD------ 140
             ++ + NE     L     + G GLN              G + +    L         
Sbjct: 875 HVLRTFANEPGPFFLLMSLRAGGVGLNCTFLCACTNTSSDSGESRVAHGLLVESKHVCCK 934

Query: 141 ----------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                          Q I+R+      + G  RAV V+ L+  +TI++ +L+  R K  +
Sbjct: 935 KHETKKTRLTPVREDQAIDRV-----HRLGQSRAVTVHRLLVNDTIEDRILEIQRHKKQL 989

Query: 191 QD 192
            D
Sbjct: 990 VD 991


>gi|212638757|ref|YP_002315277.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
 gi|212560237|gb|ACJ33292.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
          Length = 547

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
           L+   GA+             +K  ALE +I+  N   +IV   + +    LQ  F Q  
Sbjct: 333 LETTIGALLQKMNDITDHTKAKK--ALE-LIQTINDK-VIVFTEYRATQLYLQWFFKQHG 388

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   G    K     + +       +     + G G+NLQ+  + ++ + L W+  
Sbjct: 389 ISSVPFRGGFKRSKKDWMKELFQHRAQ--VLIATEAGGEGINLQF-CHHVINYDLPWNPM 445

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Q I R+      + G  + V +Y  + +NT++E +   L  K  + + ++
Sbjct: 446 RLEQRIGRV-----HRLGQMKDVHIYNFVVRNTVEEHMFTLLYEKIRLFERVV 493


>gi|134114115|ref|XP_774305.1| hypothetical protein CNBG2860 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50256940|gb|EAL19658.1| hypothetical protein CNBG2860 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1163

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +  +    + +          GLNL    N ++F    W L+   Q I+R+     
Sbjct: 959  RRLALDYFETPGVRVCLMDLKLAARGLNL-VSANRVIFLGPVWSLDVQAQAIKRV----- 1012

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             + G  R   V  L+ + T +E + +R
Sbjct: 1013 HRIGQTRPTLVQILVTEGTFEEDIARR 1039


>gi|297721831|ref|NP_001173279.1| Os03g0165266 [Oryza sativa Japonica Group]
 gi|255674231|dbj|BAH92007.1| Os03g0165266 [Oryza sativa Japonica Group]
          Length = 1078

 Score = 67.3 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ---------------GRTLDKDPCTIQEWNE- 106
            + +A    ++V   +   L  L+K   +               G T D+    +  +N  
Sbjct: 891  LSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQREQAVHRFNNS 950

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                + F    +CG G++L     I++              + R  + R  + G  + V+
Sbjct: 951  PDARVFFGSIKACGEGISLVGASRIVILD------VHENPSVMRQAIGRAYRPGQSKMVY 1004

Query: 167  VYYLIAQNTIDEL 179
             Y L+A ++ +E 
Sbjct: 1005 CYRLVAADSPEED 1017


>gi|159470465|ref|XP_001693380.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277638|gb|EDP03406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 594

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 59  LEVIIEKANAAPIIVA---YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            E ++E  +    ++            R+    P     D++  T +   E  + +    
Sbjct: 437 CEDLLEGEDPPKFLLFGEGRKLRFKYIRIDGDTPGE---DRNRLTQKFQEEEDVKVALLS 493

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQN 174
             + G GL      +++VF  L W   + QQ  +R       + G     V ++YL+ + 
Sbjct: 494 IKAAGVGLTFTRS-SLVVFSELSWIPGDIQQAEDRC-----HRIGQAATSVNIHYLLVRG 547

Query: 175 TIDELVLQRLRTK 187
           ++DE++   L++K
Sbjct: 548 SVDEIMWDCLQSK 560


>gi|310800231|gb|EFQ35124.1| WD domain-containing protein [Glomerella graminicola M1.001]
          Length = 1215

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++ + N+  I +L    +    GLNL    +        W+     Q + RI  
Sbjct: 633 KERQRVVERFRNDPSIRVLLLTLSCGAVGLNLT-AASRAYLMEPNWNPTLQDQALARI-- 689

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G +  V       +++ +E+V++  + K  +  +LL
Sbjct: 690 ---HRMGQENEVTTIQFYIRDSFEEVVVKNQKLKRELAGILL 728


>gi|119568224|gb|EAW47839.1| SNF2 histone linker PHD RING helicase, isoform CRA_d [Homo sapiens]
          Length = 1716

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1500 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1559

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1560 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1618

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1619 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1657


>gi|238597268|ref|XP_002394280.1| hypothetical protein MPER_05857 [Moniliophthora perniciosa FA553]
 gi|215463060|gb|EEB95210.1| hypothetical protein MPER_05857 [Moniliophthora perniciosa FA553]
          Length = 235

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ F   W+     Q + R       + G K  V VY  ++++T++E VL+R + K 
Sbjct: 26  ADTVIIFDSDWNPHNDLQAMAR-----AHRIGQKSHVSVYRFVSKDTMEEDVLERAKKKM 80

Query: 189 TIQDLLLNALKKETIHV 205
            ++  ++N +     H+
Sbjct: 81  VLEYAIINQMDTSQAHL 97


>gi|297824995|ref|XP_002880380.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326219|gb|EFH56639.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 800

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 23/154 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGR-------TLDKDPCTIQEW---- 104
           L  + E      ++V   +      L RL  +    R                +EW    
Sbjct: 614 LLALCEST-GEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMER 672

Query: 105 --NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N  +  + F    +CG G++L  G + ++   +  +    QQ + R       + G K
Sbjct: 673 FNNSPEAKVFFGSIKACGEGISL-VGASRVLILDVHLNPSVTQQAVAR-----AYRPGQK 726

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V+ Y L+A  + +E   +    K  +  +   
Sbjct: 727 RKVYAYKLVAAESPEEENYETCTRKEMMSKMWFE 760


>gi|255291967|dbj|BAH90453.1| helicase-like protein [uncultured bacterium]
 gi|255292161|dbj|BAH89287.1| helicase-like protein [uncultured bacterium]
 gi|255293197|dbj|BAH90288.1| ATP-dependent RNA helicase [uncultured bacterium]
          Length = 767

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 21/185 (11%)

Query: 17  GENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            E +E      +T+K L+ +A G +    +  W +++      L  I    N   +I+  
Sbjct: 456 AETVEQLALEVETLKGLESMALGVLRSGVDTKWSQLNRILDDDLM-IDAAGNRRKLIIFT 514

Query: 76  HFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                L  L              +    G + ++    ++ + + K  L+     + G G
Sbjct: 515 EPKDTLHYLLDKVRARLGNTQAVEVIHGGVSREERRKVVERFMQDKDMLVLIANDAAGEG 574

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ G +++V + L W+  + +Q   RI      + G      ++ L+A +T +  V  
Sbjct: 575 VNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----HRIGQTEVCHLWNLVAADTREGEVYA 628

Query: 183 RLRTK 187
           RL  K
Sbjct: 629 RLLEK 633


>gi|258567350|ref|XP_002584419.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905865|gb|EEP80266.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1216

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 28/177 (15%)

Query: 44   EEKHWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSD-------LARL-QKAFPQGRTL 94
                       K+  L   ++E      II+ Y  N++       L  L  +      TL
Sbjct: 907  ANTKIVATASAKLSYLLDRVLEFQETEKIIIFYENNNNAFWVAEGLEILGVEFRIYASTL 966

Query: 95   D---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                K        N  ++ +L        HGL++    + +   +  WD     Q I+R 
Sbjct: 967  KPNLKSEYLSMFNNSEEVRVLLMDLRQASHGLHV-ASASRIFIINPIWDPNIESQAIKR- 1024

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  +    R V+V  L+ +NT+++ +L+R +           +  + D  ++++
Sbjct: 1025 ----AHRISQTRPVYVETLVLRNTLEDKMLRRRKQMSNAEMQHAERDLLDDATMSSI 1077


>gi|255559547|ref|XP_002520793.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223539924|gb|EEF41502.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1246

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 22/144 (15%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
             ++  E +        I+V      DL      F +GR +DK       + E   P  +L
Sbjct: 1079 FVELFENVFRWQRGREIMV---LTGDLE----LFERGRVMDK-------FEEPGSPSRVL 1124

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             A   +C  G++L    + ++     W+  + +Q I R       + G ++ V+VY L+A
Sbjct: 1125 LASITACAEGISLT-AASRVILLDSEWNPSKTKQAIAR-----AFRPGQQKVVYVYQLLA 1178

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
              T++E    R   K  +  ++ +
Sbjct: 1179 TGTLEEDKYSRTTWKEWVSSMIFS 1202


>gi|147677193|ref|YP_001211408.1| hypothetical protein PTH_0858 [Pelotomaculum thermopropionicum SI]
 gi|146273290|dbj|BAF59039.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 1114

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--- 66
           E   +L+ E IE  ++     K ++              K+  + K+  L  +IE+    
Sbjct: 434 ETLEELR-EEIEKLDALVLLAKEVE--------------KQEIETKLNRLREVIEEERLR 478

Query: 67  -NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFA 114
                +++       L  L +   +           G  +D       E+   +  ++ A
Sbjct: 479 ETGTKLLIFTESKDTLEYLAEKIGKKWGYSVTTVHGGMGMDARIRAEHEFKN-RAQVMVA 537

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ+   ++V + + W+    +Q + RI      + G K  V +Y L+A +
Sbjct: 538 -TEAAGEGINLQF-CWLMVNYDIPWNPNRLEQRMGRI-----HRYGQKSEVHIYNLVAAD 590

Query: 175 TIDELVLQRLRTK 187
           T +  +L++L  K
Sbjct: 591 TREGRILEKLFEK 603


>gi|67523009|ref|XP_659565.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|40745970|gb|EAA65126.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|259487320|tpe|CBF85901.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_4G10830)
            [Aspergillus nidulans FGSC A4]
          Length = 1502

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 24/164 (14%)

Query: 49   KEVHDEKI-KALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGRTL 94
                  K+   L+ + E + A  II+ Y            L       R+     +    
Sbjct: 859  IATASAKLTYLLDQVQEHSKAEKIIIFYDNNNSAYWIAEGLELLGVDFRIYANTLKPTLR 918

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++     +E+   ++ +L        HGL++    + +   +  W      Q I+R    
Sbjct: 919  EEYLILFREFE--QVRVLLMDLRQASHGLHIAQ-ASRVYIVNPIWQPNIESQAIKR---- 971

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI--QDLLLN 196
               + G  R VFV  L+ ++T+++ +LQR +  + +  Q+ LL+
Sbjct: 972  -AHRIGQTRPVFVETLVLRDTLEDKILQRRKAMADVEIQNDLLD 1014


>gi|12859719|dbj|BAB31751.1| unnamed protein product [Mus musculus]
          Length = 350

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            R  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 2   DRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 54


>gi|7023894|dbj|BAA92122.1| unnamed protein product [Homo sapiens]
          Length = 350

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            R  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 2   DRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 54


>gi|328848391|gb|EGF97611.1| hypothetical protein MELLADRAFT_84825 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++     +  N   I        + G GLN+    + +      W+ +  QQ I+R+ 
Sbjct: 88  THERTCQLNRFKNNNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQQAIDRL- 145

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                + G    V VY+++A  ++++ +
Sbjct: 146 ----HRIGQTHPVKVYHVVAGQSVEQHL 169


>gi|320039594|gb|EFW21528.1| SNF2 family helicase [Coccidioides posadasii str. Silveira]
          Length = 1271

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 34/180 (18%)

Query: 47   HWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSD-------------LARLQKAFPQGR 92
                    K+  L   + E  +   II+ Y  N++               R+  +  + +
Sbjct: 917  QVVATTSAKLSYLLDRVFELQSEEKIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPK 976

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +N  + + +L        HGL+L    + +   +  WD     Q I+R 
Sbjct: 977  LK---AEYLALFNNSECVRVLLMDLRQASHGLHL-ASASRIFIINPIWDPNIESQAIKR- 1031

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNALKKE 201
                  +    + V+V  L+ ++T+++ +L+R +           K  + D  ++++ KE
Sbjct: 1032 ----AHRISQMKPVYVETLVLKDTLEDKMLRRRKQMTNIEMQHAEKDLLDDRTMSSIIKE 1087


>gi|303311435|ref|XP_003065729.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240105391|gb|EER23584.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1271

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 34/180 (18%)

Query: 47   HWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSD-------------LARLQKAFPQGR 92
                    K+  L   + E  +   II+ Y  N++               R+  +  + +
Sbjct: 917  QVVATTSAKLSYLLDRVFELQSEEKIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPK 976

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +N  + + +L        HGL+L    + +   +  WD     Q I+R 
Sbjct: 977  LK---AEYLALFNNSECVRVLLMDLRQASHGLHL-ASASRIFIINPIWDPNIESQAIKR- 1031

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNALKKE 201
                  +    + V+V  L+ ++T+++ +L+R +           K  + D  ++++ KE
Sbjct: 1032 ----AHRISQMKPVYVETLVLKDTLEDKMLRRRKQMTNIEMQHAEKDLLDDRTMSSIIKE 1087


>gi|154338293|ref|XP_001565371.1| helicase-like protein  [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062420|emb|CAM42281.1| putative helicase-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1398

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
             EL                K +  ++L   A+  DE+     +  + +  LE +I K N 
Sbjct: 906  EELCVPPSPNYTPLLEDGVKLLVAIKLVVAAMARDEKVLLFSLSTQLLTFLERMIAKVNI 965

Query: 69   A---PII--VAYHFNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
                P++      +      ++     G     +    +  ++    P L      + G 
Sbjct: 966  EWCGPVLGSQQQQYPKSPRPIRYCRLDGSHSAAQRAAMLDNFDRPDGPDLFLLSMKAGGV 1025

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+ +      ++     ++  + QQ I R       + G  R V+VY L+   T++  + 
Sbjct: 1026 GITVT-AATRVILVDTSFNPADDQQAIGR-----AYRYGQTRPVYVYRLMCYPTLEYSIF 1079

Query: 182  QRLRTKSTIQDLLLN--ALKKETI 203
             +   K  +   ++   ++K++ +
Sbjct: 1080 AQKLAKEWLFKTVVEESSVKRDGL 1103


>gi|325115673|emb|CBZ51228.1| putative SNF2 family N-terminal domain-containing protein [Neospora
           caninum Liverpool]
          Length = 1837

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFF--SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +      + G+GL L +  ++ VF       + +  +Q I R+      + G  + V V 
Sbjct: 581 VFLVSVRAGGYGLTLSHCASVCVFLEGGGDGNPQIERQAIARL-----YRQGQTKKVKVI 635

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            LI ++T++E++  R R K  +   +L
Sbjct: 636 RLITKSTVEEVMYWRGRQKLKLASDVL 662


>gi|297679363|ref|XP_002817506.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 2 [Pongo
            abelii]
          Length = 1659

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1652


>gi|114609674|ref|XP_001172938.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 1 [Pan
            troglodytes]
 gi|114609676|ref|XP_001172949.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 2 [Pan
            troglodytes]
          Length = 1659

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q I R+      + G  +   V+  + + TI+E +   L+T +  
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAANS 1656


>gi|149409031|ref|XP_001506895.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase
            [Ornithorhynchus anatinus]
          Length = 1042

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
                    +++   K  H  K++A    L+ I  K   A  +V   +   L  + KA   
Sbjct: 850  FTAETANQEDDIPVKGSHSTKVEAVVRTLKRIQFKCPGAKSLVFSTWQDVLDIISKALYD 909

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +      I ++ E         KI +L     +  +GLN+    ++L       +  
Sbjct: 910  NNMVFAQINGIHKFQENLSAFKYDPKINILLLPLHTGSNGLNIIEATHVL-LVEPILNPA 968

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 969  HELQAIGRV-----HRIGQTKPTIVHRFLIKTTIEERMQTMLKT 1007


>gi|224054730|ref|XP_002191300.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1
           [Taeniopygia guttata]
          Length = 963

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 18/138 (13%)

Query: 61  VIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTI-QEWN-EGKI 109
            ++E  N    +V  H    L           ++     G T   +  ++ Q++    K 
Sbjct: 742 ELLESGNNK-FLVFAHHKIMLDAVAAELKKKHIEHIRIDGSTSSAERQSLCQKFQLAEKH 800

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +   GL L    +++VF  L+W+     Q  +R       + G   +V V+Y
Sbjct: 801 AVAVLSLTAANMGLTL-CAADLVVFAELFWNPGILIQAEDR-----AHRIGQTSSVNVHY 854

Query: 170 LIAQNTIDELVLQRLRTK 187
           L+A+ T D+ +   ++ K
Sbjct: 855 LVAKGTADDYLWPMIQEK 872


>gi|109072462|ref|XP_001086276.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1 [Macaca
            mulatta]
          Length = 1659

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1652


>gi|328854834|gb|EGG03964.1| hypothetical protein MELLADRAFT_89789 [Melampsora larici-populina
           98AG31]
 gi|328855578|gb|EGG04704.1| hypothetical protein MELLADRAFT_88629 [Melampsora larici-populina
           98AG31]
 gi|328856061|gb|EGG05184.1| hypothetical protein MELLADRAFT_88297 [Melampsora larici-populina
           98AG31]
 gi|328859055|gb|EGG08165.1| hypothetical protein MELLADRAFT_84940 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++     +  N+  I        + G GLN+    + +      W+ +  QQ I+R+ 
Sbjct: 88  THERTCQLNRFKNDNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQQAIDRL- 145

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                + G    V VY+++A  ++++ +
Sbjct: 146 ----HRIGQTHPVKVYHVVAGQSVEQHL 169


>gi|328849288|gb|EGF98471.1| hypothetical protein MELLADRAFT_95638 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++     +  N+  I        + G GLN+    + +      W+ +  QQ I+R+ 
Sbjct: 88  THERTCQLNRFKNDNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQQAIDRL- 145

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                + G    V VY+++A  ++++ +
Sbjct: 146 ----HRIGQTHPVKVYHVVAGQSVEQHL 169


>gi|183222781|ref|YP_001840777.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912812|ref|YP_001964367.1| DNA/RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777488|gb|ABZ95789.1| DNA/RNA helicase Superfamily II [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781203|gb|ABZ99501.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 948

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 35/205 (17%)

Query: 9   RELYCDLQGENIEAFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +   +L+ E + +F    +      + + L          K  KE  D+K + L   + 
Sbjct: 426 EDFITELEDEEMSSFQRIKRELFTLNRLIHL---------GKQIKE--DKKTQKLRETLY 474

Query: 65  KANA---APIIVAYHFNSDLARLQKAF-PQGRT--------LDKDPCTIQEWNEGKIPLL 112
           +         I+   F +    LQ    P  +         +D+    IQ++ E    +L
Sbjct: 475 RLKKEGHKKFIIFTQFRTTQDHLQSVLEPDFKVSPFHGSLSMDEKEVAIQKFKE-DYEIL 533

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G NLQ+  NIL  + L W   + +Q I RI      + G K  V+++   +
Sbjct: 534 IC-TEAGGEGRNLQF-ANILFNYDLPWSPLKIEQRIGRI-----HRFGQKDNVYIFNFAS 586

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           ++T+ E +L+ L  K  + +  + A
Sbjct: 587 KDTVAERILEVLTNKIRLFEESIGA 611


>gi|119181862|ref|XP_001242109.1| hypothetical protein CIMG_06005 [Coccidioides immitis RS]
          Length = 832

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 22/144 (15%)

Query: 39  AVYYDEEKHWK--EVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ--- 90
           A+  D+ K     E    KI+AL  I+        +  +V   + S L  ++    +   
Sbjct: 632 ALGEDDSKVDVDPEESSSKIQALIKILTAHGQAPGSKTVVFSQWTSFLDLIEPQLVKHNI 691

Query: 91  --GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              R   K   T ++       N+    ++ A    C  GLNL    N ++    WW   
Sbjct: 692 TFTRIDGKMSSTKRDVAMATLTNDPNCTVMLASLNVCSVGLNL-VAANQVILTDSWWAPA 750

Query: 143 EHQQMIERIGVTRQRQAGFKRAVF 166
              Q ++R+      + G KR   
Sbjct: 751 IEDQAVDRV-----YRLGQKRPTT 769


>gi|242769688|ref|XP_002341821.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218725017|gb|EED24434.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1975

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 28/177 (15%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTL 94
             +         K+  L   +++ +    II+ Y  N+    + +              TL
Sbjct: 1653 SQTKLIATTSAKLTYLLDRVQELHKEEKIIIFYENNNTAFWIAEGLEMLGIDFRIYANTL 1712

Query: 95   DKDPCT--IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  + E   + +L        HGL++    + +   +  W  +   Q I+R 
Sbjct: 1713 KTSQKAAYLSLFEESSSVRVLLMDLRQASHGLHI-ASASRVFIVNPIWRPQVESQAIKR- 1770

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  + G  R VFV  L+ ++T++E +L R +           K  + D  ++ +
Sbjct: 1771 ----AHRIGQTRPVFVETLVLKDTLEEKMLHRRQEMSNSEMQHAEKDMLDDSTMSTI 1823


>gi|121698875|ref|XP_001267835.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
            NRRL 1]
 gi|119395977|gb|EAW06409.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
            NRRL 1]
          Length = 2150

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 46   KHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPC 99
             H       K+  L  I+         I+   +   +    KAF   +         D  
Sbjct: 1963 DHSTHFGGSKLDKLIEIVRSIPKEDRAILFIQYKELIEIASKAFDLAKITHTVISAGDSK 2022

Query: 100  TIQEWNE---GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVT 154
             I+E+ +   G   +L  +  S    GLNLQ   N + F S      ++         + 
Sbjct: 2023 KIEEFKKPSFGNNRILILNLGSEMAAGLNLQC-ANHVFFLSPMLTQTQYDYDSSMTQAIG 2081

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R R+ G  + V VY+L+ + TID  + Q  R K
Sbjct: 2082 RARRYGQIKHVHVYHLLVKRTIDVNIFQDRRGK 2114


>gi|119194229|ref|XP_001247718.1| hypothetical protein CIMG_01489 [Coccidioides immitis RS]
          Length = 1271

 Score = 66.9 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 34/180 (18%)

Query: 47   HWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSD-------------LARLQKAFPQGR 92
                    K+  L   + E      II+ Y  N++               R+  +  + +
Sbjct: 917  QVVATTSAKLSYLLDRVFELQKEEKIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPK 976

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +N  + + +L        HGL+L    + +   +  WD     Q I+R 
Sbjct: 977  LK---AEYLALFNNSECVRVLLMDVRQASHGLHL-ASASRIFIINPIWDPNIESQAIKR- 1031

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNALKKE 201
                  +    + V+V  L+ + T+++ +L+R +           K  + D  ++++ KE
Sbjct: 1032 ----AHRISQMKPVYVETLVLKGTLEDKMLRRRKQMTNIEMLHAEKDLLDDRTMSSIIKE 1087


>gi|221127791|ref|XP_002156270.1| PREDICTED: similar to Zinc finger, RAN-binding domain containing 3
           [Hydra magnipapillata]
          Length = 576

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-I 109
            +I+       +V     + +  +Q+   Q +             +    ++ +   K  
Sbjct: 333 DLIDGM-PNKFLVFCFHMTMVQAIQETLVQKKVKYICITGSVPPVQRGHLVETFQSNKEY 391

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +   GL L    + +VF  L        Q  +R       + G K AV ++Y
Sbjct: 392 RVAILSIQAASTGLTLT-AADHVVFAELHHTPGVLLQAEDRC-----HRIGQKNAVQIHY 445

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           L+AQ TID+++   L+ K  +    LN 
Sbjct: 446 LLAQGTIDDILWTMLQRKVMVTTAALNG 473


>gi|297679361|ref|XP_002817505.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1 [Pongo
            abelii]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|148671572|gb|EDL03519.1| SNF2 histone linker PHD RING helicase, isoform CRA_a [Mus musculus]
          Length = 1646

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1454 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1513

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1514 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1572

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1573 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1611


>gi|148671575|gb|EDL03522.1| SNF2 histone linker PHD RING helicase, isoform CRA_d [Mus musculus]
          Length = 1638

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1446 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1505

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1506 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1564

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1565 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1603


>gi|109072456|ref|XP_001086512.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 3 [Macaca
            mulatta]
 gi|109072458|ref|XP_001086641.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 4 [Macaca
            mulatta]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|118150662|ref|NP_001071175.1| E3 ubiquitin-protein ligase SHPRH isoform a [Mus musculus]
 gi|81894566|sp|Q7TPQ3|SHPRH_MOUSE RecName: Full=E3 ubiquitin-protein ligase SHPRH; AltName: Full=SNF2,
            histone-linker, PHD and RING finger domain-containing
            helicase
 gi|32822862|gb|AAH55003.1| SNF2 histone linker PHD RING helicase [Mus musculus]
          Length = 1674

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1482 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1541

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1542 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1600

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1601 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1639


>gi|27436873|ref|NP_775105.1| E3 ubiquitin-protein ligase SHPRH isoform b [Homo sapiens]
 gi|27369406|gb|AAO06907.1| helicase-like protein [Homo sapiens]
 gi|119568222|gb|EAW47837.1| SNF2 histone linker PHD RING helicase, isoform CRA_b [Homo sapiens]
          Length = 1659

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1652


>gi|324502242|gb|ADY40988.1| DNA repair and recombination protein RAD54B [Ascaris suum]
          Length = 415

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           V   K+     ++         ++V  +F   L  L +                   +  
Sbjct: 282 VDSGKLSVFVKMMVSLRETNEKVVVVSNFTKTLDMLSEVCKGIFCTVTRLDGSVVPHRRM 341

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + E+N   +P  +      + G GLNL  G + LV F   W+     Q + RI     
Sbjct: 342 QLVDEFNTSSLPNHVFLLSTKAVGVGLNL-IGASRLVLFDSDWNPAFDVQAMARIW---- 396

Query: 157 RQAGFKRAV 165
            + G K AV
Sbjct: 397 -RDGQKNAV 404


>gi|320588854|gb|EFX01322.1| DNA repair and recombination protein rad5c [Grosmannia clavigera
           kw1407]
          Length = 852

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 38  GAVYYDEEKHW--KEVHDEKIKA-LEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQG 91
           G V  D+E  +   E +  KI+A +E +   +        ++A H     A ++     G
Sbjct: 686 GKVIEDDEATYFNDEGYSTKIQAVIEDVRRDLATTKRTLDLLASHLKD--AGIRYLRVDG 743

Query: 92  RTLDKDPCT-IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              ++     ++E+  +  + +L     + G GLNL    N +      W+     Q I 
Sbjct: 744 SLTNRVRQDSLREFAQDADVRVLIMTTGTGGIGLNLTC-ANRIFLVEPQWNPGVESQAIA 802

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R       + G +  V V   + ++T +E +L +   K  +  +
Sbjct: 803 R-----AIRLGQESEVLVTRYLVEDTEEEAILAQQIGKKRLAAM 841


>gi|74202948|dbj|BAE26184.1| unnamed protein product [Mus musculus]
          Length = 469

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
             +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 299 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 358

Query: 91  GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 359 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 417

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 418 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 456


>gi|114609684|ref|XP_001172966.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 4 [Pan
            troglodytes]
          Length = 1687

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1652


>gi|114609678|ref|XP_001172976.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 5 [Pan
            troglodytes]
 gi|114609680|ref|XP_527525.2| PREDICTED: SNF2 histone linker PHD RING helicase isoform 6 [Pan
            troglodytes]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|32480766|gb|AAO26201.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|302885430|ref|XP_003041607.1| hypothetical protein NECHADRAFT_77238 [Nectria haematococca mpVI
           77-13-4]
 gi|256722511|gb|EEU35894.1| hypothetical protein NECHADRAFT_77238 [Nectria haematococca mpVI
           77-13-4]
          Length = 948

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 18/155 (11%)

Query: 53  DEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
             K++AL   I+    +   IV   +   L  ++    +              ++    +
Sbjct: 778 SSKVEALMTDIKTLPPSEKCIVFSTWRLTLDMVEVGLEKAHIPSVRFDGKVPQNERQEIV 837

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +  +  + ++    +    GL L             W+    +Q + RI      + G
Sbjct: 838 ERFRTDPSVRVMLLTLSCGAAGLTLTV-ATRAYLMEPHWNPTLEEQALARI-----HRIG 891

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V       +++ ++ V++   +K  +  LLL
Sbjct: 892 QTREVTTVRFYVRDSFEQHVMEVQDSKKHLSGLLL 926


>gi|119568221|gb|EAW47836.1| SNF2 histone linker PHD RING helicase, isoform CRA_a [Homo sapiens]
          Length = 1687

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1495 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1554

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1555 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1613

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1614 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1652


>gi|109734410|gb|AAI17687.1| SHPRH protein [Homo sapiens]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|75812890|ref|YP_320507.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75705646|gb|ABA25318.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 900

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +K     +++N+G++        + G G++LQ     L+   L W+     Q + R+
Sbjct: 522 SLREKRENAAEKFNKGEVR-FLISTEAGGEGIDLQENCYSLIHVDLPWNPMRLHQRVGRL 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 + G KRAV V  L    T++ L+  +L  K    D ++ +L+
Sbjct: 581 N-----RYGQKRAVEVITLRNPQTVETLIWDKLNRKI---DNIMQSLQ 620


>gi|291227441|ref|XP_002733693.1| PREDICTED: RAD54 homolog B-like [Saccoglossus kowalevskii]
          Length = 921

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 44/175 (25%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK-ANAAP---IIVAYHFNSDLARLQKAFPQ------ 90
           Y DE          K+  L  +++   N  P   ++V  ++   L  LQ+   +      
Sbjct: 671 YRDESNAVDYTDSGKLIVLAAMLKSFHNDTPQQRVVVVSNYTQTLDLLQQLCDKEGYTYG 730

Query: 91  ---GRTLDKDPCTI-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
              G T       I   +        +      + G GLNL  G   L+ + + W+    
Sbjct: 731 RLDGSTPTATRQDIVNRFTSKYSDQFVFLLSCKAGGVGLNL-IGAARLILYDIDWNPAND 789

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Q                            +I+E + QR  +K  +   +++  K
Sbjct: 790 LQ---------------------------GSIEEKIYQRQISKQGLSGAVVDYRK 817


>gi|169869799|ref|XP_001841456.1| hypothetical protein CC1G_12776 [Coprinopsis cinerea okayama7#130]
 gi|116497465|gb|EAU80360.1| hypothetical protein CC1G_12776 [Coprinopsis cinerea okayama7#130]
          Length = 1321

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 69  APIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             ++V   F S    ++  F               +D+    +  +N      +      
Sbjct: 836 RKVLVYQEFPSFTGLVRNIFRLHGVKVLAIDGATPIDQRSSIVATFNTDPEYRVLIFSKV 895

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLNL    N+++F    W  ++ +Q+I R    R       R V V +++A++T D 
Sbjct: 896 GATGLNLTR-ANVVLFLDQPWSAQDERQIIGRAYRQR-----QTREVTVIHILAEDTADI 949

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +    R K  + D  LN
Sbjct: 950 TLSLLARGKKDMLDAFLN 967


>gi|289547541|ref|NP_001036148.2| E3 ubiquitin-protein ligase SHPRH isoform a [Homo sapiens]
 gi|146325723|sp|Q149N8|SHPRH_HUMAN RecName: Full=E3 ubiquitin-protein ligase SHPRH; AltName: Full=SNF2,
            histone-linker, PHD and RING finger domain-containing
            helicase
 gi|55665328|emb|CAH70765.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
 gi|57209105|emb|CAI41120.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 1683

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1491 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1550

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1551 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1609

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1610 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1648


>gi|328868528|gb|EGG16906.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1268

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F   W+     Q  ER+      + G K+ V +Y L+   TI+E +  R   K  + 
Sbjct: 879 VILFDPDWNPSTDTQARERV-----YRIGQKKNVTIYRLMTTGTIEEKIYHRQIYKQFLS 933

Query: 192 DLLL 195
           + +L
Sbjct: 934 NKIL 937


>gi|268324801|emb|CBH38389.1| conserved hypothetical protein, ATP-dependent helicase related
           [uncultured archaeon]
          Length = 1120

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTL- 94
           + + E    +E+  + +K  + I+       +++   F   +  L         +  T+ 
Sbjct: 455 IGFAETVKAREIESKLVKLRDDILSNIGDMKLLIFTEFRDTVDYLVAKLTSWGYKVNTIH 514

Query: 95  -----DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                D        + + +  ++ A   + G G+NLQ+  +++V + + W+    +Q + 
Sbjct: 515 GSMGMDARIEAEHRF-KNETQIMVA-TEAAGEGINLQF-CSLMVNYDIPWNPNRLEQRMG 571

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           RI      + G  + VF+Y +++++T +  +L RL  K
Sbjct: 572 RI-----HRYGQDKEVFIYNMVSKDTREGQILDRLFDK 604


>gi|114558332|ref|XP_001157980.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           7 [Pan troglodytes]
          Length = 802

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++F    ++ +   Q   R       + G  ++V V  LI ++T++E
Sbjct: 330 GGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQNKSVKVIRLIGRDTVEE 383

Query: 179 LVLQRLRTKSTIQDLLLNA 197
           +V ++  +K  + ++++  
Sbjct: 384 IVYRKAASKLQLTNMIIEG 402


>gi|255014572|ref|ZP_05286698.1| SNF2-related protein [Bacteroides sp. 2_1_7]
          Length = 916

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +I E+       ++   P + G GLN+    N ++ +S  W+  +  Q  +R  
Sbjct: 796 RQTRQASINEFQAVDGFNVIIMSPVAAGMGLNVT-AANHVIHYSRQWNPAKESQATDR-- 852

Query: 153 VTRQRQAGFKRAVFVYYLIA----QNTIDELVLQRLRTKSTIQDLLL 195
                + G  + V+VYY +A      T DE++   L  K+++    +
Sbjct: 853 ---AYRIGQTKDVYVYYPMAVTSDIKTFDEILDDLLSRKTSLATSTI 896


>gi|114609682|ref|XP_001172960.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 3 [Pan
            troglodytes]
          Length = 1572

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1380 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1439

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1440 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1498

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1499 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1537


>gi|46255694|gb|AAH05038.1| CHD1L protein [Homo sapiens]
          Length = 789

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++F    ++ +   Q   R       + G  ++V V  LI ++T++E
Sbjct: 316 GGVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQNKSVKVIRLIGRDTVEE 369

Query: 179 LVLQRLRTKSTIQDLLLNA 197
           +V ++  +K  + ++++  
Sbjct: 370 IVYRKAASKLQLTNMIIEG 388


>gi|303283812|ref|XP_003061197.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226457548|gb|EEH54847.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1429

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 35/170 (20%)

Query: 32   CLQLANGAVY---YDEEKHWKEVHD-----EKIKALEVIIE--KANAAPIIVAYHFNSDL 81
              +L N         +   W+   D      K+  L+ ++   +A+   +++       L
Sbjct: 846  LRKLCNHPALNYPIAKGGEWRSGPDLVRAGGKLWVLDRVLVKLRASGHRVLLFSTMTKLL 905

Query: 82   ARLQKAFP-----------------QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHG 122
              L+                         LD+    I ++NE      L      + G G
Sbjct: 906  DLLEDYLKWRASTPICEGLEWCRIDGTTPLDEREVAITQFNERDSKKFLFLLSIRAAGRG 965

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LNLQ   + +V +    + +  +Q + R       + G KR V V +  A
Sbjct: 966  LNLQT-ADTVVVYDPDPNPKNEEQAVAR-----SHRIGQKREVKVMHFEA 1009


>gi|154244631|ref|YP_001415589.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154158716|gb|ABS65932.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1167

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 30/210 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSA---------SKTVKCLQ-LANGAVYYDEEKHWKE 50
           ++   ++ +E   +L+        +A          +T+K L+ +A G +    +  W +
Sbjct: 431 LRNIEEYGQEEIDELEDLISTGATTAETVEQLVLEVETLKSLEAMALGVLRSGVDTKWSQ 490

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKD 97
           ++      L  I    N   +I+       L  L +                 G + ++ 
Sbjct: 491 LNRILDDDLM-IDSAKNRRKLIIFTEPKDTLNYLLEKVRARLGNPEAVDVIHGGVSREER 549

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ + + K  L+     + G G+NLQ G +++V + L W+  + +Q   RI      
Sbjct: 550 RKVVERFMQDKDLLVLIANDAAGEGVNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----H 603

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G      ++ L+A +T +  V  RL  K
Sbjct: 604 RIGQTEVCHLWNLVAADTREGEVYARLLEK 633


>gi|326389940|ref|ZP_08211503.1| helicase domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994000|gb|EGD52429.1| helicase domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 894

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 23/150 (15%)

Query: 53  DEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KD 97
           D K + L   I++      N+   IV   F +    L+        +   L+      + 
Sbjct: 452 DAKAEVLIDFIDQLSMEYKNSQKFIVFTEFLATQQYLKDFLESKGYKVAILNGSMSMEER 511

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +++E+   K   +     + G GLNLQ+  NI++ + L W+  + +Q I R+      
Sbjct: 512 DASLKEFKNYKD--VLISTDAGGEGLNLQF-CNIVINYDLPWNPMKIEQRIGRVD----- 563

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G +R V V   + ++TI+  V + L  K
Sbjct: 564 RIGQERDVLVLNFMLEDTIEFRVREVLEEK 593


>gi|10803646|ref|NP_046044.1| hypothetical protein VNG7099 [Halobacterium sp. NRC-1]
 gi|16120089|ref|NP_395677.1| ATP-dependent RNA helicase [Halobacterium sp. NRC-1]
 gi|169237287|ref|YP_001690493.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|169237330|ref|YP_001690535.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|2822377|gb|AAC82883.1| unknown [Halobacterium sp. NRC-1]
 gi|10584193|gb|AAG20812.1| ATP-dependent RNA helicase [Halobacterium sp. NRC-1]
 gi|167728353|emb|CAP15157.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|167728846|emb|CAP15738.1| ATP-dependent helicase [Halobacterium salinarum R1]
          Length = 979

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 24/167 (14%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTL-----DKDP 98
            D K + L+     I+ +     I++   +   L  L+      +   +       D+  
Sbjct: 463 TDSKAQMLKQFVDRILTEDPDEKILIFTEYTDTLEYLRDRVFAEYDIAQVYGDLDQDRRR 522

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++   K   +     +   GLNLQ+  +I+  F L W      Q + R+      +
Sbjct: 523 QEMADFENEKN--IMIATDAAQEGLNLQF-AHIMANFDLPWSPTRIDQRMGRL-----HR 574

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLLLNALKKETIH 204
            G +R V +  L  ++T +  +L  L  K   I+  L   ++ + + 
Sbjct: 575 YGQERTVEIRNLFFKDTRESEILNLLVEKTDQIESDL--GMRSDVLG 619


>gi|211906285|gb|ACJ11660.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211906292|gb|ACJ11664.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +QQ   R+      + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 1   YQQFNARL-----HRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKDI 54


>gi|19072776|gb|AAL84633.1|AF474993_1 putative transcription regulator WdMOT1 [Exophiala dermatitidis]
          Length = 1703

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++  Q ++R       + G K+ V VY LI + T++E ++   R K 
Sbjct: 1588 ADTVIFVEHDWNPQKDIQAMDR-----AHRIGXKKVVNVYRLITRGTLEEKIMXLQRFKI 1642

Query: 189  TI 190
             +
Sbjct: 1643 DV 1644


>gi|146324153|ref|XP_753558.2| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|129558042|gb|EAL91520.2| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159126710|gb|EDP51826.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 1167

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 40/190 (21%)

Query: 43   DEEKHWKE-----VHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARL--------- 84
            DEE  W       +   K+  +  ++     +   A ++V   F  D  R+         
Sbjct: 948  DEELDWISAAQGGMPGAKVDKVRDLVANWVREDPDAKVVVFTQF-LDFVRIFSSICAKEG 1006

Query: 85   ---QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                +   +     +D    +   + ++ ++ A   + G G+++    N  +   LWW+ 
Sbjct: 1007 WAHCRLTGKMSVGARDLSMNEFREKQEVKVMIASLMAGGTGIDMSM-ANKCILVDLWWNE 1065

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK----------STIQ 191
               QQ   R+      + G ++ V V  +I QNTID+ +LQ    K            +Q
Sbjct: 1066 AVQQQAFCRL-----YRIGQEKVVEVVKIIVQNTIDDYILQLQTKKSVNINKAIGEEALQ 1120

Query: 192  --DLLLNALK 199
              D +++ LK
Sbjct: 1121 KRDKIIDLLK 1130


>gi|239827701|ref|YP_002950325.1| SNF2-related protein [Geobacillus sp. WCH70]
 gi|239807994|gb|ACS25059.1| SNF2-related protein [Geobacillus sp. WCH70]
          Length = 555

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K +    +I+  N   +I+   + +    LQ    Q             
Sbjct: 344 MEKINAVTTNSKAEKALQLIQSINDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFK 402

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++   F    + G G+NLQ+    ++ + L W+    +Q I R+ 
Sbjct: 403 RGKKDWMKELFKNHAQV---FIATEAGGEGINLQF-CRHVINYDLPWNPMRLEQRIGRV- 457

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G    V++Y    +NT++E +L  L  K  + + ++
Sbjct: 458 ----HRLGQTNDVYIYNFAVKNTVEEHILTLLYEKIRLFERVV 496


>gi|321460571|gb|EFX71612.1| hypothetical protein DAPPUDRAFT_10188 [Daphnia pulex]
          Length = 1009

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 47  HWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------DK 96
             K  H  K++A    L +I +    A  +V   +   L  + +A  +          +K
Sbjct: 833 RVKGSHSTKVQAVVQQLLLIKKDDPDAKCLVFSTWIDVLLIVGRALDENNISHCSFFSNK 892

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++  +  + +L     S  +GLNL    ++L+      +     Q I R+    
Sbjct: 893 SQVQLNKFKRDPSVSVLLIPIQSGANGLNLTEATHVLLM-EPILNPGSELQAIGRV---- 947

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             + G  +   V+  + ++TI+E +   L  
Sbjct: 948 -HRIGQTKPTVVHRFLVKHTIEEKMAVMLEK 977


>gi|290988418|ref|XP_002676918.1| predicted protein [Naegleria gruberi]
 gi|284090523|gb|EFC44174.1| predicted protein [Naegleria gruberi]
          Length = 1056

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
           ++K        K+  +  +++  +      ++   F   L  L+      +         
Sbjct: 513 DDKGILIYSSSKMVVVHKLLKKFRDANEKTLILSQFLEMLDVLESYLQSEQISYVRIDGS 572

Query: 95  ---DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++    I ++  + +  +          G+NL    N ++ +   ++     Q   R
Sbjct: 573 CPSEERQRYIDKFQTDSECRVFLLSTKIS-QGINLT-AANHVIIYDSDFNPFNDSQAAAR 630

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  + G  + VFVY L+ +++ ++ ++ R   K   + L+L
Sbjct: 631 -----AHRIGQTKKVFVYRLVTKDSYEKYIISRASKKLGREKLVL 670


>gi|118575361|ref|YP_875104.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
 gi|118193882|gb|ABK76800.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
          Length = 1016

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 69/169 (40%), Gaps = 29/169 (17%)

Query: 48  WKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
             +  + K+  L+     + +      I+V       L  L     +          G  
Sbjct: 380 INQESEVKLGNLKETMSNLWKDHPGKKILVFTESKDTLDYLMGKMEKWGYLANTIHGGMG 439

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           L++     + + + K  ++ A   + G G+NLQ+  ++++ + L W+    +Q + R+  
Sbjct: 440 LEERVEAERVF-KNKTDVMVA-TEAAGEGINLQF-CHLMINYDLPWNPNRLEQRMGRV-- 494

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               + G +  V V+ LIA NT +  + ++L  +       L ++K++ 
Sbjct: 495 ---HRYGQQYPVTVFNLIASNTREGEIFKKLFER-------LESIKRDV 533


>gi|259907267|ref|YP_002647623.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
            Ep1/96]
 gi|224962889|emb|CAX54370.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
            Ep1/96]
 gi|283477080|emb|CAY72980.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
            12163]
          Length = 1081

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 31/205 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-ALEVI--IEKANAAPII 72
            +G             K   +       + E  ++E H  K+   L  +  I+++    +I
Sbjct: 866  EGMQEAGTGMLGLLHKLKLICAHPFSVNPEPGYRE-HSPKLNWMLHTLDGIKRSGEDKVI 924

Query: 73   VAYHFNSDLARLQKAF----------------PQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
            V          LQ A                  +  + +     I ++       ++   
Sbjct: 925  VFTELRDLQRELQHAIYQRFGFRPVIINGDTSTKSNSQNSRQKLIDDFQSQPGFDVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +  Q  +R       + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAKEDQATDR-----AYRIGQTKDVYVYYPTVRDS 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLLN 196
               T +E + + L  + ++   +L+
Sbjct: 1039 EVTTFEETLDELLNRRRSLARDMLS 1063


>gi|70732012|ref|YP_261757.1| SNF2 family helicase [Pseudomonas fluorescens Pf-5]
 gi|68346311|gb|AAY93917.1| helicase, SNF2 family [Pseudomonas fluorescens Pf-5]
          Length = 650

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQ 102
           KI+    ++ + +    +I+   F   +A L+    +                +     +
Sbjct: 484 KIRIAMDLLSELDPDDKVILFCEFKPTVAALKALCEEAGIGHVTLVGSDSPAKRQKAIDR 543

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              +    +     ++ G G NL    N + F  L W   +  Q  +R       + G  
Sbjct: 544 FQQDPDCRVFICTTSAAGTGNNLT-AANYVFFLGLPWTPGQQDQAEDR-----AYRNGQL 597

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + +ID+ + + L  K  +   L+ 
Sbjct: 598 RMVIVKIPLIEASIDQQLWELLLAKRQVSLELIE 631


>gi|194670154|ref|XP_594787.4| PREDICTED: helicase-like transcription factor-like [Bos taurus]
 gi|297478761|ref|XP_002690346.1| PREDICTED: helicase-like transcription factor-like [Bos taurus]
 gi|296483940|gb|DAA26055.1| helicase-like transcription factor-like [Bos taurus]
          Length = 1694

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1502 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1561

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1562 NNMEFAQISRVKTFQENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1620

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1621 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1659


>gi|327295284|ref|XP_003232337.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
 gi|326465509|gb|EGD90962.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
          Length = 1167

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 47   HWKEVHDEKIK-ALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGR 92
                    K+   LE +++  +   II+ Y            L       R+     +  
Sbjct: 865  KVIGTVSAKLSYLLEKVLQFQDTEKIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKAS 924

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +NEG+ + +L        HGL++    + +   +  WD     Q I+R 
Sbjct: 925  QK---SEYLSTFNEGESVRVLLMDLRQASHGLHI-ASASRVFIVNPIWDPNIESQAIKR- 979

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  +    R V+V  L+ ++T+++ +L+R +           K  + D  ++++
Sbjct: 980  ----AHRISQTRPVYVETLVLKDTLEDKMLRRRKAMTSVEMQHAEKDMLNDGTMSSI 1032


>gi|222624012|gb|EEE58144.1| hypothetical protein OsJ_09059 [Oryza sativa Japonica Group]
          Length = 822

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 62/176 (35%), Gaps = 45/176 (25%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------------- 85
           E +H  +    K+  L++I++K +     +++       L  LQ                
Sbjct: 361 EGEHLVQ-ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGS 419

Query: 86  ----KAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               + F   ++    P    +++ N+    +      + G GLNL  G + ++F+   W
Sbjct: 420 VRAEERFAAIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDW 478

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +  +Q ++R       + G    V              +++R   K  +   ++
Sbjct: 479 NPQADKQALQR-----AHRIGQLNNV--------------IMRRAERKLKLSHSVI 515


>gi|58269458|ref|XP_571885.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228121|gb|AAW44578.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 585

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +    + +          GLNL    N ++F    W L+   Q I+R+     
Sbjct: 475 RRLALDYFETPGVRVCLMDLKLAARGLNL-VSANRVIFLGPVWSLDVQAQAIKRV----- 528

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQR 183
            + G  R   V  L+ + T +E + +R
Sbjct: 529 HRIGQTRPTLVQILVTEGTFEEDIARR 555


>gi|148654421|ref|YP_001274626.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566531|gb|ABQ88676.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 1116

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEW-NE 106
           ALE + +      I++       L  L+K              G  L       + + NE
Sbjct: 480 ALEQLNQNHPGEKILIFTESRDTLEHLEKNVRLWGYSVCTIHGGMDLASRIQAEKTFKNE 539

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I +      + G G+NLQ+  ++++ + + W+    +Q + RI      + G  R VF
Sbjct: 540 AQIMVA---TEAAGEGINLQF-CHLMINYDIPWNPNRLEQRMGRI-----HRYGQTREVF 590

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V+ L+A +T +  V Q +  K
Sbjct: 591 VFNLVATDTREGRVWQAVFRK 611


>gi|91089449|ref|XP_967843.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
 gi|270011408|gb|EFA07856.1| hypothetical protein TcasGA2_TC005426 [Tribolium castaneum]
          Length = 661

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHP 116
               +V  H    L  +     +            T ++    + ++       +     
Sbjct: 463 GQKFLVFAHHQIMLNAVCNVLDKKNVKYIRIDGSTTSEQRKFFVDKFQLNDDCLVAVLSI 522

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   G+ L     +++F  L W+     Q       +R  + G +  V + YL+A  T 
Sbjct: 523 TAANAGITLT-AAQLVLFAELHWNPSILSQA-----ESRAHRIGQQNPVIIKYLLAPGTA 576

Query: 177 DELVLQRLRTKSTIQDLL 194
           D+ +   L+ K  I + +
Sbjct: 577 DDSIWPMLQNKQKILEEV 594


>gi|153006150|ref|YP_001380475.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029723|gb|ABS27491.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1002

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 66  ANAAPIIVAYHF---NSDLARLQKAFPQGRTL-------DKDPCTIQEW-NEGKIPLLFA 114
            +   ++V   +    +  A L +    G                I  + ++ +  +   
Sbjct: 622 GDRRKVVVFSEWERMQAMAAELCERLGVGHVRLHGGVPSAARGALIDRFRDDPECRVFL- 680

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNLQ   + +V   L W+     Q I R+      + G + AV V  L+++ 
Sbjct: 681 STDAGGVGLNLQ-AASHVVNLDLPWNPAVLAQRIARV-----HRLGQREAVNVVLLVSEG 734

Query: 175 TIDELVLQRLRTKSTIQDL 193
           + +E +   L  K  +   
Sbjct: 735 SFEERLEATLDGKRALFAA 753


>gi|73945644|ref|XP_533438.2| PREDICTED: similar to SNF2 histone linker PHD RING helicase isoform 1
            [Canis familiaris]
          Length = 1685

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1493 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1552

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1553 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1611

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR--TKSTIQDLL 194
               Q I R+      + G  +   V+  + + TI+E +   L+   KS     +
Sbjct: 1612 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSHTSSSV 1660


>gi|167524411|ref|XP_001746541.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774811|gb|EDQ88437.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1057

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 19/167 (11%)

Query: 48  WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDK 96
           +KE    KI A+   I          +V  +    L          +L     +G T   
Sbjct: 361 YKETGAAKIPAVREYIRGLCQTGDKFLVFAYHLDVLDAVHVEVVAAKLDYIMIRGDTPVS 420

Query: 97  DPCT-IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++++       +      + G GL L    + ++F  L W     +Q  +R+   
Sbjct: 421 ERQAGVRKFQGNDSCRVAILSMTAAGQGLTLT-AASTVIFAELHWTPGIIEQAEDRV--- 476

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G    V V YL+A+ T+D+ +   +  K  +    L+  ++ 
Sbjct: 477 --HRIGQGDPVNVQYLVARRTLDDTMWNIVDRKVGVVSSALDGQRER 521


>gi|291397118|ref|XP_002714908.1| PREDICTED: SNF2 histone linker PHD RING helicase [Oryctolagus
            cuniculus]
          Length = 1688

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1496 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1555

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1556 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1614

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + ++TI+E +   L+T
Sbjct: 1615 HELQAIGRV-----HRIGQTKPTIVHRFLIKSTIEERMQAMLKT 1653


>gi|118088342|ref|XP_419651.2| PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus
            gallus]
          Length = 1681

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
                    +++   K  H  K++A    L+ I  K   A  +V   +   L  + KA   
Sbjct: 1489 FTAETANQEDDIPVKGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALYD 1548

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I ++ E         KI +L     +  +GLN+    ++L       +  
Sbjct: 1549 NNMTFSQINGISKFQENLSAFKYDPKINILLLPLHTGSNGLNIIEATHVL-LVEPILNPA 1607

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  ++  V+  + + TI+E +   L+T
Sbjct: 1608 HELQAIGRV-----HRIGQTKSTIVHRFLIKATIEERMQTMLKT 1646


>gi|219883019|ref|YP_002478183.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
 gi|219862025|gb|ACL42366.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
          Length = 762

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 21/156 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           VY      W   H   ++AL   +EKA            +D          G    K   
Sbjct: 569 VYTRPLTVWVH-HQPVMQALIEAVEKAG----------IAD----AGFIDGGVAQHKRQA 613

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +   G+I ++F    + G G+ L    +  +F    W      Q  +R       + 
Sbjct: 614 VADKLQNGEIGVIFCSIGAAGFGITLTASSDT-IFIETDWTPANISQAEDR-----NNRI 667

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G      V  L+A NT+D  +   LR K+   D+++
Sbjct: 668 GQLNTCMVTTLLATNTLDAHMRAILRNKAKDLDVMM 703


>gi|193698855|ref|XP_001947409.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
            pisum]
          Length = 1178

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 48   WKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLD---K 96
             K     KI+     L  +I +     +++  +++  L  L +A  Q     R L    K
Sbjct: 1007 IKGSFSTKIESVTLKLIELITQDPNVKVLIFSNWDKALNLLGEALDQNSISYRILKPGTK 1066

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               T++++   K I  L    +    GLNL      + F     +  +  Q I RI    
Sbjct: 1067 YKKTLKDFKSNKKINALLMKLSLGSKGLNLTE-ATRVFFMEPIINKADEHQAIGRI---- 1121

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELV 180
              + G  +  FV+  I +++I+E +
Sbjct: 1122 -HRIGQTKPTFVHNFIIRDSIEENI 1145


>gi|211906290|gb|ACJ11663.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +QQ   R+      + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 1   YQQFNARL-----HRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKDI 54


>gi|212529810|ref|XP_002145062.1| helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074460|gb|EEA28547.1| helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 987

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 42  YDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQG 91
            D+       +  K+  L   + +  N    I+   +   L  +         + A   G
Sbjct: 795 DDDGYLRSNGYSSKMTMLVSDVQKALNTTKSIIFSCWTRTLDLIGKHLSSANIEYARIDG 854

Query: 92  RT-LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +T L +    +  ++    IP+L     +   GLNL    N +      W+     Q I 
Sbjct: 855 KTPLSQRQKILDSFDRTRNIPILIMTTGTGALGLNL-KSVNRVFIIEPQWNPAVESQAIA 913

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R       + G    V V     + +I+E + ++   K  I  +
Sbjct: 914 R-----AIRLGQTEQVLVIRYHVKGSIEENMCEQQTQKLKISKM 952


>gi|301774839|ref|XP_002922838.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 2
            [Ailuropoda melanoleuca]
          Length = 1689

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1497 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1556

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1557 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1615

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q I R+      + G  +   V+  + + TI+E +   L+T     
Sbjct: 1616 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSH 1659


>gi|301774837|ref|XP_002922837.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1
            [Ailuropoda melanoleuca]
          Length = 1685

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1493 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1552

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1553 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1611

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q I R+      + G  +   V+  + + TI+E +   L+T     
Sbjct: 1612 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSH 1655


>gi|281350981|gb|EFB26565.1| hypothetical protein PANDA_011861 [Ailuropoda melanoleuca]
          Length = 1688

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1496 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1555

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1556 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1614

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               Q I R+      + G  +   V+  + + TI+E +   L+T     
Sbjct: 1615 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSH 1658


>gi|296199407|ref|XP_002747128.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH, partial [Callithrix
            jacchus]
          Length = 1681

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1496 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1555

Query: 88   ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1556 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1614

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1615 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1653


>gi|120536993|ref|YP_957051.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326827|gb|ABM21136.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 906

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +  ++ +  +      + G GL L      ++F  L W      Q  +R     
Sbjct: 739 RQAQADRFQSDEQCKVFVGTIQAAGVGLTLT-AAQTVLFAELDWVPGNMNQAEDR----- 792

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G    V VY+   + +ID  +++RL  K    D  L A
Sbjct: 793 AHRIGQLDHVLVYHTAVEGSIDTQMIRRLIEKQQTIDEALEA 834


>gi|330794038|ref|XP_003285088.1| hypothetical protein DICPUDRAFT_148935 [Dictyostelium purpureum]
 gi|325085011|gb|EGC38427.1| hypothetical protein DICPUDRAFT_148935 [Dictyostelium purpureum]
          Length = 232

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
            +Y           D  +  L ++++    +  ++   + S L  +              
Sbjct: 90  PIYDSSNWKCSTKIDSLLDELNIVLKNEPDSKCLIFSQWTSMLDLI-------------- 135

Query: 99  CTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                     IPL     P   G         +       WW+    +Q I+R+      
Sbjct: 136 ---------DIPLNINSMPWWIGFKF------SCCFTCDPWWNPATEEQAIDRV-----Y 175

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  + V V   + +++I+E +L+  ++K  +    L  +KK+   
Sbjct: 176 RIGQNKNVNVIRFLIKDSIEEKILELQKSKKDLAKEAL-TMKKQPQQ 221


>gi|167037341|ref|YP_001664919.1| helicase domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115757|ref|YP_004185916.1| helicase domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856175|gb|ABY94583.1| helicase domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928848|gb|ADV79533.1| helicase domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 894

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 23/150 (15%)

Query: 53  DEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQKAFP----QGRTLD------KD 97
           D K + L   I++      N+   IV   F +    L+        +   L+      + 
Sbjct: 452 DAKAEVLIDFIDQLSMEYKNSQKFIVFTEFLATQQYLKDFLESKGYKVAILNGSMSMEER 511

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +++E+   K   +     + G GLNLQ+  NI++ + L W+  + +Q I R+      
Sbjct: 512 DASLKEFKNYKD--VLISTDAGGEGLNLQF-CNIVINYDLPWNPMKIEQRIGRVD----- 563

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G +R V V   + ++T++  V + L  K
Sbjct: 564 RIGQERDVLVLNFMLKDTVEFRVREVLEEK 593


>gi|330844016|ref|XP_003293935.1| hypothetical protein DICPUDRAFT_99797 [Dictyostelium purpureum]
 gi|325075687|gb|EGC29545.1| hypothetical protein DICPUDRAFT_99797 [Dictyostelium purpureum]
          Length = 1247

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 24/150 (16%)

Query: 49   KEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFP------------QGR 92
            +E    K++ L   +E+ +A       IV   FN  L  ++ +                 
Sbjct: 1005 EEFKSCKLEYLIQRLEELDAKEDPIKTIVFTQFNETLYEIEWSLKFKTNLKYLVYNTHQS 1064

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--WDLEEHQQMIER 150
              ++              ++  +     +G+NL    N ++F      W++ + +Q I+R
Sbjct: 1065 LRERSSTINSFQTNQDYKIIVMNVDLAAYGINLT-AANHIIFVDPIPIWNISKERQAIKR 1123

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                   + G  + V V  LI  N+I++ +
Sbjct: 1124 -----AHRIGQTKPVTVEKLIINNSIEQTL 1148


>gi|193785257|dbj|BAG54410.1| unnamed protein product [Homo sapiens]
          Length = 882

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
             +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 690 FTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 749

Query: 88  ----FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 750 NNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 808

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 809 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 847


>gi|73945646|ref|XP_861216.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase isoform 3
            [Canis familiaris]
          Length = 1575

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1383 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1442

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1443 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1501

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR--TKSTIQDLL 194
               Q I R+      + G  +   V+  + + TI+E +   L+   KS     +
Sbjct: 1502 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSHTSSSV 1550


>gi|302885904|ref|XP_003041843.1| hypothetical protein NECHADRAFT_53012 [Nectria haematococca mpVI
           77-13-4]
 gi|256722749|gb|EEU36130.1| hypothetical protein NECHADRAFT_53012 [Nectria haematococca mpVI
           77-13-4]
          Length = 687

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 72  IVAYHFNSDLARLQKAF---------PQGRT-LDKDPCTIQEWN---EGKIPLLFAHPAS 118
           IV   + S L  L++             GR  +      ++++    E  IP+L     +
Sbjct: 571 IVFTAWRSTLDLLERMLTENGIQCRRIDGRVSISDRTERLKDFQFDPENSIPVLLLSIET 630

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL L    + +      W+    QQ I R       + G KR V +   I QNT++E
Sbjct: 631 GAVGLTLT-AADRVHIVEPQWNPSVEQQAIGR-----ALRIGQKRKVTIVKYIVQNTVEE 684


>gi|295829290|gb|ADG38314.1| AT2G46020-like protein [Neslia paniculata]
          Length = 201

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 16/108 (14%)

Query: 82  ARLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            RL      G T L+     I ++N+      +      + G GLNLQ   + +V +   
Sbjct: 15  RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-ADTVVIYDPD 73

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + +  +Q + R       + G  R V V Y+       E V+++L +
Sbjct: 74  PNPKNEEQAVAR-----AHRIGQTREVKVIYM-------EAVVEKLSS 109


>gi|242080501|ref|XP_002445019.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
 gi|241941369|gb|EES14514.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
          Length = 749

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 24/154 (15%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DK 96
           K      I+  AN     ++    +        RL    K +  G+ +          D+
Sbjct: 556 KANFFMNILSLANSAGEKVLAFSQYILPMKFFERLLVKMKGWHVGKEIFMISGDTSQEDR 615

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +       N     +LF    +CG G++L  G + +V   +  +    +Q I R      
Sbjct: 616 EVAVDHFNNSADAKVLFGSIKACGEGISL-VGASRVVILDVHLNPSVTRQAIGR-----A 669

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G ++ VFVY L+A ++ +E V +    K  I
Sbjct: 670 FRPGQQKKVFVYRLVAADSDEEKVHETAFKKEVI 703


>gi|52545910|emb|CAE45796.2| hypothetical protein [Homo sapiens]
          Length = 192

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            R  + G  + V VY LI + TI+E +LQR + KS IQ ++++    K +T+ 
Sbjct: 2   DRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 54


>gi|195437364|ref|XP_002066610.1| GK24475 [Drosophila willistoni]
 gi|194162695|gb|EDW77596.1| GK24475 [Drosophila willistoni]
          Length = 734

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGK 108
           L+ +I++      I+  H    L  +       +            D     ++ + +  
Sbjct: 515 LKTLIKE--KIKFIIFAHHRIMLDAICDCLSTLKVHYIRIDGSTRSDLRADFVETFQKKS 572

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     +++F  L W+     Q       +R  + G  + V  
Sbjct: 573 SCQVAVLSLKACNSGITLT-AAEMIIFAELDWNPSTLAQA-----ESRAHRIGQTKPVIC 626

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A  T D+ +   L+ K  +
Sbjct: 627 RYLMAHQTADDTIWNMLKAKQDV 649


>gi|289580072|ref|YP_003478538.1| helicase [Natrialba magadii ATCC 43099]
 gi|289529625|gb|ADD03976.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 584

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 54  EKIKALEVIIEKANAA----PIIVAYHFNSD----LARLQ------KAFPQGRTLDKDPC 99
            K + L  I+E+A        +IV   F +     L RL        AF  G +  +   
Sbjct: 364 TKQERLLDIVEEARDNVEMGRVIVFTQFRATQRQVLDRLASEGYTVHAFHGGHSSSEKEK 423

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ + E G I        +   G NLQ+  N+LV   L W+    +Q I R+      +
Sbjct: 424 IVKNFEEEGGI---LVSTDAMSEGRNLQF-CNLLVNMDLPWNPMRVEQRIGRV-----HR 474

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G KR VF++ +  ++T++E VL+RL  K  +
Sbjct: 475 IGQKRDVFIFNMALKDTVEEYVLERLYHKIDL 506


>gi|322825950|gb|EFZ30762.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 914

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 49  KEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                 KI A++  ++            +I+  H    +  +++A    +          
Sbjct: 465 IATARAKIAAVQDYVKSTTEQMVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYI 524

Query: 96  --------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++  T          +      SCG G NL     ++VF  L W+   H Q 
Sbjct: 525 TGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHNLTC-ATMVVFAELDWNPSTHLQC 583

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G   A  + YL+A+ T D ++   L+TK  +   +L 
Sbjct: 584 EDRV-----HRMGQSSACVIKYLLAEGTSDSVIWPMLQTKLNVTHAVLE 627


>gi|71648872|ref|XP_813216.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878080|gb|EAN91365.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 744

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 49  KEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                 KI A++  ++            +I+  H    +  +++A    +          
Sbjct: 295 IATARAKIAAVQDYVKSTTEQMVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYI 354

Query: 96  --------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++  T          +      SCG G NL     ++VF  L W+   H Q 
Sbjct: 355 TGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHNLTC-ATMVVFAELDWNPSTHLQC 413

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G   A  + YL+A+ T D ++   L+TK  +   +L 
Sbjct: 414 EDRV-----HRMGQSSACVIKYLLAEGTSDSVIWPMLQTKLNVTHAVLE 457


>gi|71653795|ref|XP_815529.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70880590|gb|EAN93678.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 938

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 49  KEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                 KI A++  ++            +I+  H    +  +++A    +          
Sbjct: 489 IATARAKIAAVQDYVKSTTEQMVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYI 548

Query: 96  --------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++  T          +      SCG G NL     ++VF  L W+   H Q 
Sbjct: 549 TGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHNLTC-ATMVVFAELDWNPSTHLQC 607

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R+      + G   A  + YL+A+ T D ++   L+TK  +   +L 
Sbjct: 608 EDRV-----HRMGQSSACVIKYLLAEGTSDSVIWPMLQTKLNVTHAVLE 651


>gi|284048597|ref|YP_003398936.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
 gi|283952818|gb|ADB47621.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
          Length = 969

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 97  DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+     +L   P + G GLN+  G N ++  S  W+  +  Q  +R     
Sbjct: 847 RQKMVNQFNQASGFQVLLLSPEAAGVGLNIT-GANHVIHLSRCWNPAKEDQATDR----- 900

Query: 156 QRQAGFKRAVFVYYLIAQNT 175
             + G K+AV VY  +A +T
Sbjct: 901 AYRIGQKKAVTVYLPMAVDT 920


>gi|147676740|ref|YP_001210955.1| hypothetical protein PTH_0405 [Pelotomaculum thermopropionicum SI]
 gi|146272837|dbj|BAF58586.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 82

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ + LWW+     Q  +R       + G  R V V+ LI+  T +E +   + +K  + 
Sbjct: 1   MIHYDLWWNPAVEDQATDR-----TYRIGQTRTVMVHRLISLGTFEEKINTMMASKRELA 55

Query: 192 DLLLNA 197
            L + A
Sbjct: 56  GLTVAA 61


>gi|76154388|gb|AAX25878.2| SJCHGC08203 protein [Schistosoma japonicum]
          Length = 190

 Score = 65.7 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP---------QGRT 93
           E         K + L+ I+ K       +++     S +  +Q  F           G T
Sbjct: 58  EGKILYRSSGKFELLDRILPKLKCCGHRVLIFCQMTSLMTIMQDYFDYRNFRYLRLDGTT 117

Query: 94  LDKDP-CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D    + ++N+    I +      + G GLNLQ   + ++ F   W+  +  Q    
Sbjct: 118 RSEDRGELLVKFNDTSEDIFIFLLSTRAGGLGLNLQ-AADTVIIFDSDWNPHQDLQA--- 173

Query: 151 IGVTRQRQAGFK 162
               R  + G +
Sbjct: 174 --QDRAHRIGQQ 183


>gi|323448244|gb|EGB04145.1| hypothetical protein AURANDRAFT_39147 [Aureococcus anophagefferens]
          Length = 684

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 57  KALEVIIEKANAAPIIVAYHFN--------SDLARLQKAFPQGRT--LDKDPCTIQEWNE 106
             L  + E+  +  ++V  H            L  ++     G T   D+        N+
Sbjct: 546 DLLHGVDEERFSGKMLVFAHHRKVLDTLANGILRDIKYIRIDGTTPAKDRQSRVTTFQND 605

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K+ +      + G  L L    + ++F  L+W      Q  +R       + G    V 
Sbjct: 606 AKVRVALLGITAAGIALTLT-AASRVIFTELYWTPAALLQAEDR-----AHRIGQTSEVV 659

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V YL+A + +DE++   ++ K
Sbjct: 660 VEYLLADDCVDEILWPLIQHK 680


>gi|13905182|gb|AAH06883.1| Shprh protein [Mus musculus]
          Length = 581

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
             +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 389 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 448

Query: 91  GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 449 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 507

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 508 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 546


>gi|302687500|ref|XP_003033430.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
 gi|300107124|gb|EFI98527.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
          Length = 2254

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 58   ALEVIIEKANAAP----IIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEW 104
             LE +++  N  P    +++   F           D  ++     +G    +     +  
Sbjct: 2090 KLEEVVKLINGLPKNERVLLFVQFADLTKKVSEALDYHKIPHLEIKGSASARSTALDKFQ 2149

Query: 105  NEGKIPLLFAHPA-SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N  K  +L  +       G NL    + +    L    ++  Q  E   V R  + G ++
Sbjct: 2150 NGSKERVLLLNVRDESASGANLTCANHAIFLSPLHAPTKDLYQAWETQAVGRVVRYGQQK 2209

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             V ++  I  +TID  + ++       Q   +  + +  
Sbjct: 2210 PVQIHRFITMDTIDSEIFEKQHADLAQQGKAIEDVTRAV 2248


>gi|297663946|ref|XP_002810426.1| PREDICTED: transcription termination factor 2-like [Pongo abelii]
          Length = 1159

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 24/158 (15%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCT------IQ 102
               +  LE I   + +   ++   + + L      L+K      T+D           ++
Sbjct: 994  SSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVE 1053

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILV---FFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N  +       P      +      + L     FS   +     Q  +RI      + 
Sbjct: 1054 AFNHSR------GPQVQAESIAFLMAKSYLAQFYHFSRILNPSLEDQACDRI-----YRV 1102

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1103 GQQKDVVIHKFVCEGTVEEKILQLQEKKKDLAKQVLSG 1140


>gi|212542133|ref|XP_002151221.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210066128|gb|EEA20221.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 1209

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 28/177 (15%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTL 94
             +         K+  L   +++ +    II+ Y  N+    + +              TL
Sbjct: 890  SQTKLVATTSAKLTYLLDRVQELHKEEKIIIFYENNNTAFWIAEGLELLGIDFRIYANTL 949

Query: 95   DKDPCT--IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  + E   + +L        HGL++    + +   +  W      Q I+R 
Sbjct: 950  KTSQKAAYLSLFEESSSVRILLMDLRQASHGLHI-ASASRVFIVNPIWRPYVESQAIKR- 1007

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  + G  R VFV  L+ ++T++E +L R +           K  + D  ++++
Sbjct: 1008 ----AHRIGQTRPVFVETLVLKDTLEEKMLHRRQEMSNSEMQHAEKDMLDDSAMSSI 1060


>gi|39935287|ref|NP_947563.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|39649139|emb|CAE27659.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
          Length = 1172

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 30/210 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSA---------SKTVKCLQ-LANGAVYYDEEKHWKE 50
           +K   ++ ++   DL+        +A          +T+K L+ +A G +    +  W +
Sbjct: 430 LKNIEEYGQDEIDDLEDLIATGATTAETVEQLALEVETLKGLETMALGVLRSGLDAKWTQ 489

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKD 97
           ++      L  +    N   +I+       L  L                   G + ++ 
Sbjct: 490 LNRILDDDLM-VDADGNRRKLIIFTEPKDTLHYLVDKVRARLGNPDAVDVIHGGVSREER 548

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+ + + +  L+     + G G+NLQ G +++V + L W+  + +Q   RI      
Sbjct: 549 RKVIERFMQDRDMLVLIANDAAGEGVNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----H 602

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           + G      ++ L+A +T +  V  RL  K
Sbjct: 603 RIGQTEVCHLWNLVAADTREGEVYARLLEK 632


>gi|326480935|gb|EGE04945.1| hypothetical protein TEQG_03790 [Trichophyton equinum CBS 127.97]
          Length = 1000

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 47  HWKEVHDEKIK-ALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGR 92
                   K+   LE +++  +   II+ Y            L       R+     +  
Sbjct: 698 KVIGTVSAKLSYLLEKVLQFQDTEKIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKAS 757

Query: 93  TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   +  +NEG+ + +L        HGL++    + +   +  WD     Q I+R 
Sbjct: 758 QK---SEYLSTFNEGESVRVLLMDLRQASHGLHI-ASASRVYIVNPIWDPNIESQAIKR- 812

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                 +    R V+V  L+ ++T+++ +L+R +           K  + D  ++++
Sbjct: 813 ----AHRISQTRPVYVETLVLKDTLEDKMLRRRKAMTSVEMQHAEKDMLNDGTMSSI 865


>gi|326473936|gb|EGD97945.1| hypothetical protein TESG_05245 [Trichophyton tonsurans CBS 112818]
          Length = 1168

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 47   HWKEVHDEKIK-ALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGR 92
                    K+   LE +++  +   II+ Y            L       R+     +  
Sbjct: 866  KVIGTVSAKLSYLLEKVLQFQDTEKIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKAS 925

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +NEG+ + +L        HGL++    + +   +  WD     Q I+R 
Sbjct: 926  QK---SEYLSTFNEGESVRVLLMDLRQASHGLHI-ASASRVYIVNPIWDPNIESQAIKR- 980

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  +    R V+V  L+ ++T+++ +L+R +           K  + D  ++++
Sbjct: 981  ----AHRISQTRPVYVETLVLKDTLEDKMLRRRKAMTSVEMQHAEKDMLNDGTMSSI 1033


>gi|50550555|ref|XP_502750.1| YALI0D12562p [Yarrowia lipolytica]
 gi|49648618|emb|CAG80938.1| YALI0D12562p [Yarrowia lipolytica]
          Length = 1098

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 26/193 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKAL--EVIIEKA 66
           E Y +  G  +E+  + +      QL   A Y   +K         K+  L  + ++   
Sbjct: 812 EEYLESVGLKVESAPTGAPQNHHSQL--EADYPVSDKPTIVGTGSSKLSYLVSKTLV-LV 868

Query: 67  NAAPIIVAYHFNSD------------LARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLF 113
               IIV Y                 +  L     +    ++    +  +       +L 
Sbjct: 869 KDHKIIVFYEDVDSAVAVAEAFEAVGIKHLIYTTDKVS-KERRAQYLATFEATDNFQVLL 927

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +  +  HGLN+    + + F S  W  +   Q I+R       + G K  V V  L+ Q
Sbjct: 928 MNINAAAHGLNIT-SASWVFFLSPVWRRDIEAQAIKR-----AHRIGQKSEVHVETLVLQ 981

Query: 174 NTIDELVLQRLRT 186
           +T++E + +R   
Sbjct: 982 DTLEEDIYRRRTE 994


>gi|15226547|ref|NP_179740.1| CHR34 (chromatin remodeling 34); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|4567276|gb|AAD23689.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252085|gb|AEC07179.1| chromatin remodeling 34 [Arabidopsis thaliana]
          Length = 816

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 65  KANAAPIIVAYHFN---SDLARLQKAFPQGR-------TLDKDPCTIQEW------NEGK 108
           ++    ++V   +      L RL  +    R                +EW      N  +
Sbjct: 633 ESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSLE 692

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             + F    +CG G++L  G + ++   +  +    QQ + R       + G KR V+ Y
Sbjct: 693 AKVFFGSIKACGEGISL-VGASRVLILDVHLNPSVTQQAVAR-----AYRPGQKRKVYAY 746

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+A ++ +E   +    K  +  +   
Sbjct: 747 KLVAADSPEEENYETCTRKEMMSKMWFE 774


>gi|189241979|ref|XP_967778.2| PREDICTED: similar to TBC1D12: TBC1 domain family, member 12
           [Tribolium castaneum]
          Length = 572

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++F    W+     Q  +R       + G  + V VY L+ + TIDE++L R   K 
Sbjct: 449 ADTVIFMDRDWNPMVDLQAQDRC-----HRIGQTKPVMVYSLVTKGTIDEIILNRADVKK 503

Query: 189 TIQDLLL 195
            +  +++
Sbjct: 504 RLGKVVI 510


>gi|15425711|dbj|BAB64333.1| hypothetical protein [Streptomyces griseus]
          Length = 724

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 71  IIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGH 121
           ++V  +F   LA + +A                +    +  ++      +L +   + G 
Sbjct: 558 VVVFSYFREVLATVGEALGPDAFGPLSGSVAPARRQELVDAFSAVDGHAVLLSQIQAGGT 617

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q   ++++            Q + R       + G  R V V+ L+A +++D+ ++
Sbjct: 618 GLNMQ-AASVVILCEPQIKPTLEHQAVAR-----AHRMGQVRPVQVHRLLATDSVDQRLV 671

Query: 182 Q 182
            
Sbjct: 672 D 672


>gi|311243824|ref|XP_001924825.2| PREDICTED: e3 ubiquitin-protein ligase SHPRH [Sus scrofa]
          Length = 1685

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
              +     +E+   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1493 FTSEKASQEEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTD 1552

Query: 88   ----FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                F Q   +      +  +  + +I +L     +  +GL +    ++L       +  
Sbjct: 1553 NNMEFAQISRVKTFQENLSAFKHDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1611

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q I R+      + G  +   V+  + + TI+E +   L+T
Sbjct: 1612 HELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQAMLKT 1650


>gi|270001791|gb|EEZ98238.1| hypothetical protein TcasGA2_TC000677 [Tribolium castaneum]
          Length = 1345

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 26/169 (15%)

Query: 35   LANGAVYYDEEKHWKEVHDEKI-----KALEVIIE-------KANAAPIIVAYHFNSDLA 82
            L +   Y    +H      EKI       +E I+        +     I++   +   L+
Sbjct: 1145 LTSEISYIKPGEHQTVPESEKIAGNYSTKVESIVRLILKLRLEDEDVKILLFSTWIPVLS 1204

Query: 83   RLQKAFPQGR------TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
             +++A  +        T       I+++ +    I +L       G GLNL    + ++ 
Sbjct: 1205 YIREALTKNSVTSELITSGNLEKQIEKFKDADQNITVLLLPINLGGKGLNLIEATH-VIL 1263

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 +  E  Q I R+      + G  R   V+    ++TI+E + + 
Sbjct: 1264 TEPLLNPGEELQAIGRV-----HRIGQTRPTVVHKFFIKHTIEESIQKA 1307


>gi|170114873|ref|XP_001888632.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164636327|gb|EDR00623.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 129

 Score = 65.3 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++     + G GLN+    N ++    WW+       +E   ++R  ++G  R V  Y
Sbjct: 22  CRVILVSIGAGGSGLNIT-ACNHVILMEPWWN-----PYVEASSISRAYRSGQNRNVHTY 75

Query: 169 YLIAQNTIDELVL 181
           +L+ Q++I+E ++
Sbjct: 76  HLVVQDSIEENIV 88


>gi|196002339|ref|XP_002111037.1| hypothetical protein TRIADDRAFT_54568 [Trichoplax adhaerens]
 gi|190586988|gb|EDV27041.1| hypothetical protein TRIADDRAFT_54568 [Trichoplax adhaerens]
          Length = 1562

 Score = 65.3 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 27/146 (18%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWN-EGKIPL-L 112
           K     +++       L  L +             G    D     +  +N +G      
Sbjct: 729 KETGHRVLIFSQMVRMLDILAEYLQIKHFLFQRLDGSIRGDLRKQALDHFNADGSQDFCF 788

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + ++ F   W+ +   Q       +R  + G ++         
Sbjct: 789 LLSTRAGGLGLNL-ASADTVIIFDSDWNPQNDIQA-----QSRAHRIGQRK--------- 833

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           QN+++E +++R   K  +  L++  +
Sbjct: 834 QNSVEEEIIERATKKMVLDHLVIQRM 859


>gi|91076936|ref|XP_975165.1| PREDICTED: similar to DNA repair protein RAD16 [Tribolium castaneum]
          Length = 1188

 Score = 65.3 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 26/169 (15%)

Query: 35   LANGAVYYDEEKHWKEVHDEKI-----KALEVIIE-------KANAAPIIVAYHFNSDLA 82
            L +   Y    +H      EKI       +E I+        +     I++   +   L+
Sbjct: 985  LTSEISYIKPGEHQTVPESEKIAGNYSTKVESIVRLILKLRLEDEDVKILLFSTWIPVLS 1044

Query: 83   RLQKAFPQGR------TLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
             +++A  +        T       I+++ +    I +L       G GLNL    + ++ 
Sbjct: 1045 YIREALTKNSVTSELITSGNLEKQIEKFKDADQNITVLLLPINLGGKGLNLIEATH-VIL 1103

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 +  E  Q I R+      + G  R   V+    ++TI+E + + 
Sbjct: 1104 TEPLLNPGEELQAIGRV-----HRIGQTRPTVVHKFFIKHTIEESIQKA 1147


>gi|116194784|ref|XP_001223204.1| hypothetical protein CHGG_03990 [Chaetomium globosum CBS 148.51]
 gi|88179903|gb|EAQ87371.1| hypothetical protein CHGG_03990 [Chaetomium globosum CBS 148.51]
          Length = 1140

 Score = 65.3 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 93   TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T D+    I  + E   I +L A     G  LNL +  N ++    WW+     Q   R+
Sbjct: 1004 TKDQKEAAILNFQEKPNIKVLIASARCGGQALNLNF-ANRVISVDQWWNRAMEDQAFGRV 1062

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST-IQDLLLNALKKETI 203
                  + G ++  +   +I +++IDE++L     K   I D+    + +  +
Sbjct: 1063 -----HRIGQQKETYFTKIIVRDSIDEMLLNTQDAKEKRISDVFKEGVDRREM 1110


>gi|114762663|ref|ZP_01442097.1| possible ATP-dependent RNA helicase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544573|gb|EAU47579.1| possible ATP-dependent RNA helicase [Roseovarius sp. HTCC2601]
          Length = 978

 Score = 65.3 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 83/207 (40%), Gaps = 27/207 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSA------SKTVKCLQ-LANGAVYYDEEKHWKEVHD 53
           M +Y + + +   DL   +  +  +A       +T+K L+ +A   ++   +  W+++  
Sbjct: 417 MDEYGQDEIDEMEDLISTSATSAETAEQLEIEVETLKGLEGMALRVLHSGHDTKWQQLDK 476

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCT 100
                  ++    +   +I+       L  L+                  G T ++    
Sbjct: 477 ILDDD-LMLDPDGHRRKLIIFTEPKDTLEYLRNKVTARLGKPDAVDVIYGGVTREERRKV 535

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + + +  L+     + G G+NLQ G +++V + L W+  + +Q   RI      + G
Sbjct: 536 VERFMQDRDMLVLIANDAAGEGVNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----HRIG 589

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 ++ L+A++T +  V  RL  K
Sbjct: 590 QTEVCHLWNLVAKDTREGDVYARLLEK 616


>gi|315922824|ref|ZP_07919064.1| helicase [Bacteroides sp. D2]
 gi|313696699|gb|EFS33534.1| helicase [Bacteroides sp. D2]
          Length = 1022

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 27/214 (12%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLAN---GAVYYDEE-----KHWKEVHDEKIKA 58
           +   Y D  GE +     +     +  Q+A+   G +  + +       ++   D K++ 
Sbjct: 415 EDNSYTDYDGEEVLTQGGALGLVQRKRQVASSVWGYLNKETDLDRGIDAFESCPDAKVEE 474

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEWNEG 107
           L+ IIE    +    ++V   F   L  L     +           ++     + ++ + 
Sbjct: 475 LQRIIEAVFKSGTKKLVVFALFRRTLKYLHIRLKKAGYNALIIHGQVENRAEILTQFKKD 534

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVF 166
           K   +         GL++Q+  N +V + L W+    +Q I RI      + G K + V 
Sbjct: 535 KNTHILLSSEVGSEGLDMQF-CNSMVNYDLPWNPMVVEQRIGRID-----RFGQKAKVVN 588

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +Y L+   +I E +  RL  +  I    +  ++ 
Sbjct: 589 IYNLVVAGSIQEEIYMRLLERIGIFRGTIGDMEA 622


>gi|302759176|ref|XP_002963011.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
 gi|300169872|gb|EFJ36474.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
          Length = 2074

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 70   PIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
             I+V   +   L  L+ A         + +   +   +I E+ +  I ++        +G
Sbjct: 1111 KILVFSTWQEVLDLLEHALKSNKLSWVRLKQRRQMGSSILEFKKENIQVMLLPIQHGANG 1170

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + ++      +     Q I R+      + G +    V+  I +NT++E + +
Sbjct: 1171 LNLIEAQH-VILVEPLLNPAVEAQAINRV-----HRIGQRLKTLVHRFIIRNTVEENIYK 1224

Query: 183  RLRTKSTI 190
              + K+ +
Sbjct: 1225 MSQQKTNL 1232


>gi|260174557|ref|ZP_05760969.1| helicase domain protein [Bacteroides sp. D2]
          Length = 1046

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 27/214 (12%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLAN---GAVYYDEE-----KHWKEVHDEKIKA 58
           +   Y D  GE +     +     +  Q+A+   G +  + +       ++   D K++ 
Sbjct: 439 EDNSYTDYDGEEVLTQGGALGLVQRKRQVASSVWGYLNKETDLDRGIDAFESCPDAKVEE 498

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEWNEG 107
           L+ IIE    +    ++V   F   L  L     +           ++     + ++ + 
Sbjct: 499 LQRIIEAVFKSGTKKLVVFALFRRTLKYLHIRLKKAGYNALIIHGQVENRAEILTQFKKD 558

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVF 166
           K   +         GL++Q+  N +V + L W+    +Q I RI      + G K + V 
Sbjct: 559 KNTHILLSSEVGSEGLDMQF-CNSMVNYDLPWNPMVVEQRIGRID-----RFGQKAKVVN 612

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +Y L+   +I E +  RL  +  I    +  ++ 
Sbjct: 613 IYNLVVAGSIQEEIYMRLLERIGIFRGTIGDMEA 646


>gi|86136229|ref|ZP_01054808.1| hypothetical protein MED193_18939 [Roseobacter sp. MED193]
 gi|85827103|gb|EAQ47299.1| hypothetical protein MED193_18939 [Roseobacter sp. MED193]
          Length = 1032

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 25/135 (18%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDP 98
             ++ A   I+   +      +V         R  +   +               + +  
Sbjct: 815 SARLLATMDILRGVQDRGERALVFIEHVKMQHRFIELTKREFGLPRVDLINGSTPIPRRQ 874

Query: 99  CTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +  +      +    LL   P + G GL L    + ++  S WW+    +Q  +R+  
Sbjct: 875 EIVNRFQRHLARDEGFDLLVLGPKAAGTGLTLTAATH-VIHLSRWWNPAVEEQCNDRV-- 931

Query: 154 TRQRQAGFKRAVFVY 168
               + G  + V V+
Sbjct: 932 ---HRIGQSKPVTVH 943


>gi|66807307|ref|XP_637376.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60465784|gb|EAL63860.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1872

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 69   APIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPC---TIQEWN-EGKIPLLFAHPASC 119
              II+   +   L  + +A  +      + + +       I ++  +  + +L       
Sbjct: 1701 QKIIIFSQWADVLEIISRALKENEIQFAKAVHRGSSFEMAINQFRKDPNVNVLLLPLIKG 1760

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G+GLNL    + +       +    +Q I R+      + G  +   ++  I +NTI+E 
Sbjct: 1761 GNGLNLIEATH-VFLVEPILNPALEKQAINRV-----HRFGQNKETNIHRFIIKNTIEEK 1814

Query: 180  VLQRLRTKS 188
            V+Q  + K 
Sbjct: 1815 VVQMNQLKE 1823


>gi|322499968|emb|CBZ35042.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1873

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHF------NSDLARLQKAFP----QGRTLDKDPCTIQE 103
              ++ +E I        ++V   +        D    Q   P       +L +    ++ 
Sbjct: 1675 AFLEVVEEIWRTQPDDGVLVFSKYPAFLKLAHDAVAAQGYAPHMVCGASSLAQRQRAMRA 1734

Query: 104  WNEG-------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +  +LF    S   GLNL +  N +VF     +    QQ + R+     
Sbjct: 1735 MQPPSGASVLSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPAIEQQAVGRV----- 1788

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             + G  R V V++  A +TI+E++ +R
Sbjct: 1789 HRFGQLRQVIVHHFFAPHTIEEVIYRR 1815


>gi|242047042|ref|XP_002461267.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
 gi|241924644|gb|EER97788.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
          Length = 1205

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 92   RTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            + L      + ++N   EGK  +L A   +C  G++L  G + LV     W+  + +Q I
Sbjct: 1065 QELPVRSDVMDKFNSDREGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAI 1123

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R       + G +R VFVY L+A  T +E      R K+ I  ++ 
Sbjct: 1124 AR-----AFRPGQERMVFVYLLVASGTWEEDKYNSNRRKAWIAKMVF 1165


>gi|146089885|ref|XP_001470501.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070534|emb|CAM68877.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1871

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHF------NSDLARLQKAFP----QGRTLDKDPCTIQE 103
              ++ +E I        ++V   +        D    Q   P       +L +    ++ 
Sbjct: 1673 AFLEVVEEIWRTQPDDGVLVFSKYPAFLKLAHDAVAAQGYAPHMVCGASSLAQRQRAMRA 1732

Query: 104  WNEG-------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +  +LF    S   GLNL +  N +VF     +    QQ + R+     
Sbjct: 1733 MQPPSGASVLSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPAIEQQAVGRV----- 1786

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             + G  R V V++  A +TI+E++ +R
Sbjct: 1787 HRFGQLRQVIVHHFFAPHTIEEVIYRR 1813


>gi|310765239|gb|ADP10189.1| Non-specific serine/threonine protein kinase [Erwinia sp. Ejp617]
          Length = 1081

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 31/205 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-ALEVI--IEKANAAPII 72
            +G             K   +       + E  ++E H  K+   L  +  I+++    +I
Sbjct: 866  EGMQQAGTGMLGLLHKLKLICAHPFSVNPEPGYRE-HSPKLNWMLHTLDGIKRSGEDKVI 924

Query: 73   VAYHFNSDLARLQKAF----------------PQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
            V          LQ A                  +  + +     I ++       ++   
Sbjct: 925  VFTELRDLQRELQHAIYQRFGFRPVIINGDTSTKSNSQNSRQKLIDDFQSQPGFDVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +  Q  +R       + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAKEDQATDR-----AYRIGQTKDVYVYYPTVRDS 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLLN 196
               T +E + + L  + ++   +L+
Sbjct: 1039 EVTTFEETLDELLNRRRSLARDMLS 1063


>gi|332019805|gb|EGI60266.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Acromyrmex
           echinatior]
          Length = 693

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 84  LQKAFPQGRTLDKDPCT-IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +      G+T  +     I ++ E  +         +   G+ L    N++VF  L+W+ 
Sbjct: 513 IVYIRIDGKTSSEQRQLLIDKFQECDECLAAVLSITAVNTGVTLT-AANLVVFTELFWNP 571

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q  +R+      + G    V + YLIAQNT D+ +   L  K  I + +   LK++
Sbjct: 572 GILSQAEDRV-----HRIGQNNIVTIQYLIAQNTADDYIWPLLNKKKDILNAV--GLKQD 624


>gi|260712905|ref|YP_003226960.1| SNF2-related protein [Zymomonas mobilis subsp. mobilis NCIB 11163]
 gi|258553431|gb|ACV76376.1| SNF2-related protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1034

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 33/188 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALE 60
           K Y   +++L    +G      N+          +   AV              ++ A  
Sbjct: 769 KAYDDIRKKLKEGQRG------NALKLLHHIRTASVHPAVSSVSTDQKFIAQSGRLAATF 822

Query: 61  VIIEK--ANAAPIIVA-------YHF----NSDLARLQKAFPQGRT-LDKDPCTIQEWNE 106
            I+++        +V        Y F     S+    +     G+T + +    +  + +
Sbjct: 823 EILKRIKTRGERALVFIENLKMQYRFAALVRSEFGLERVEIINGQTSISERQKIVDRFQK 882

Query: 107 ------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                  K  LL   P + G GL L    + ++  S WW+    +Q  +R+      + G
Sbjct: 883 HLKDSKNKFDLLILGPRAAGTGLTLTAATH-VIHLSRWWNPAVEEQCNDRV-----HRLG 936

Query: 161 FKRAVFVY 168
             + V+VY
Sbjct: 937 QTQPVYVY 944


>gi|313906357|ref|ZP_07839698.1| helicase domain protein [Eubacterium cellulosolvens 6]
 gi|313468821|gb|EFR64182.1| helicase domain protein [Eubacterium cellulosolvens 6]
          Length = 1190

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 53  DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAF---------------PQGRTL 94
           D K++ L  +I +        +I+   F   L  ++K                  + R  
Sbjct: 678 DPKLEKLFDVIARKQGEENNRVILFSSFQHTLRYVKKHLQAKGYRVAQVDGFVPDEERFE 737

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++   +   NE  + +L         GL+ Q+  + ++ + L W+    +Q I RI   
Sbjct: 738 IRERFLMDRDNEQAVDVLLFS-EVGCEGLDYQF-CDTMINYDLPWNPMRIEQRIGRID-- 793

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R+     +V +Y +I   TID ++  R  +K  + +  +
Sbjct: 794 --RRGQKSESVRIYNMITDGTIDAVIHDRCLSKIGVFESSI 832


>gi|158421592|ref|YP_001527819.1| helicase related protein [Deinococcus geothermalis DSM 11300]
 gi|158342835|gb|ABW35121.1| helicase related protein [Deinococcus geothermalis DSM 11300]
          Length = 1786

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHD----EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-- 86
            LQ A G + +         HD     K++ +  +         ++       +A L++  
Sbjct: 1546 LQSALGTLKHAAIGRVVNEHDPATNAKVQHVLNLAHARRGRGGVIFARNRRSIAMLKEQL 1605

Query: 87   --------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                          T D      + ++ G + ++     +   G NLQ+ G  LV + L 
Sbjct: 1606 EAQGHRVGVIDGSTTTDGKGKVRKAFDAGHVDIVLCS-DAGATGANLQHRGEWLVNYDLP 1664

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               +  +Q   RI      + G  + V +++L+     D   +QRL  K  +  +L
Sbjct: 1665 LTQKTLEQRNARID-----RLGQTKKVELHHLVTDTAYDRDNVQRLTRKRELGSIL 1715


>gi|110669157|ref|YP_658968.1| ATP-dependent helicase HepA [Haloquadratum walsbyi DSM 16790]
 gi|109626904|emb|CAJ53373.1| ATP-dependent helicase HepA [Haloquadratum walsbyi DSM 16790]
          Length = 959

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 47  HWKEVHDEKIKAL--EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
              +  D K++ L  E + ++   + +I+   +   L  L+    + +    D       
Sbjct: 480 RVTKSRDAKLQRLLDETLPQRFQYSRVIIFTKYVDTLEYLKDQIEESQGERTDVFTLHGS 539

Query: 98  ---PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  + +NE  G    +         G+NLQ+  N ++ + L W+    +Q   RI 
Sbjct: 540 LNEAQRKERFNEFEGSDRAVLIATDVISEGMNLQHAANQIIHYELPWNPNRLEQRNGRID 599

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              Q     +  V +  ++ ++ +D  +L+ L  K+ 
Sbjct: 600 RYGQ----EEDEVVIRTMVVEDQMDVAILKTLVKKAD 632


>gi|116191639|ref|XP_001221632.1| hypothetical protein CHGG_05537 [Chaetomium globosum CBS 148.51]
 gi|88181450|gb|EAQ88918.1| hypothetical protein CHGG_05537 [Chaetomium globosum CBS 148.51]
          Length = 1040

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
           V   F   L  ++     G+T  K   T + ++N + ++ +        G G+NL  G N
Sbjct: 771 VIEAFIQRLDNIKYIRMDGKTPVKQRQTLVDQFNTDPELDVFLLTTKVGGLGVNLT-GAN 829

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--------IAQNTIDELVLQ 182
            ++ F   W+     Q  ER       + G KR    + L        ++    D  +LQ
Sbjct: 830 RVIIFDPDWNPSTDVQARERAW-----RLGQKREQTTFNLNDLHDLFSLSSYEHDRKMLQ 884

Query: 183 RLRTKSTIQDLL 194
           +   +   Q  L
Sbjct: 885 QEANRIAAQAAL 896


>gi|295829278|gb|ADG38308.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829280|gb|ADG38309.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829282|gb|ADG38310.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829284|gb|ADG38311.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829286|gb|ADG38312.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829288|gb|ADG38313.1| AT2G46020-like protein [Capsella grandiflora]
          Length = 201

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 82  ARLQKAFPQGRT-LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            RL      G T L+     I ++N+      +      + G GLNLQ   + +V +   
Sbjct: 15  RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-ADTVVIYDPD 73

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            + +  +Q + R       + G  R V V Y+ A
Sbjct: 74  PNPKNEEQAVAR-----AHRIGQTREVKVIYMEA 102


>gi|238588204|ref|XP_002391661.1| hypothetical protein MPER_08877 [Moniliophthora perniciosa FA553]
 gi|215456617|gb|EEB92591.1| hypothetical protein MPER_08877 [Moniliophthora perniciosa FA553]
          Length = 249

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 38/150 (25%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGRT-LDKDP 98
           +   K++AL  +++  +     ++V   F   L           ++     G T +D   
Sbjct: 32  LDSGKVQALLKLLKIYEDEGRKVLVFSQFTQVLDILELILKERNIKYLMLTGSTPVDVRQ 91

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+ E + I        + G G+NL    ++++                        
Sbjct: 92  SLVDEFTEDQSISAFLLSTKAGGMGINLT-AASVVIM----------------------- 127

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             G KR V V  LI + TI+E + +    K
Sbjct: 128 -IGQKRDVDVVKLITRXTIEEDITELGEMK 156


>gi|218191902|gb|EEC74329.1| hypothetical protein OsI_09617 [Oryza sativa Indica Group]
          Length = 661

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 62/176 (35%), Gaps = 45/176 (25%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------------- 85
           E +H  +    K+  L++I++K +     +++       L  LQ                
Sbjct: 363 EGEHLVQ-ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGS 421

Query: 86  ----KAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               + F   ++    P    +++ N+    +      + G GLNL  G + ++F+   W
Sbjct: 422 VRAEERFAAIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDW 480

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +  +Q ++R       + G    V              +++R   K  +   ++
Sbjct: 481 NPQADKQALQR-----AHRIGQLNNV--------------IMRRAERKLKLSHSVI 517


>gi|237743866|ref|ZP_04574347.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432897|gb|EEO43109.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 1163

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 21/125 (16%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
           ++ Y F+ ++  +     +          + ++ + +   ++   P + G GLN+    N
Sbjct: 841 VIKYWFDIEVGIVNGDADKTS----RRRILDDFRKKEGFNVIILSPEAAGVGLNIVE-AN 895

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----------TIDELV 180
            ++ ++  W+  + +Q  +R       + G K+ V+VYY I  N          T+DE +
Sbjct: 896 HVIHYTRHWNPAKEEQATDR-----AYRIGQKKDVYVYYPIISNVENIEREEYHTVDEWI 950

Query: 181 LQRLR 185
            ++L 
Sbjct: 951 RKQLE 955


>gi|224100259|ref|XP_002311805.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851625|gb|EEE89172.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 3427

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G G+NLQ   + ++ F   W+ +   Q   R       + G KR V      
Sbjct: 1468 VVVSIRAGGVGVNLQ-AADTVIIFDTDWNPQVDLQAQAR-----AHRIGQKREVQ----- 1516

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
               T++E V      K  + +  + A
Sbjct: 1517 ---TVEEQVRASAEHKLGVANQSITA 1539


>gi|12043930|gb|AAG47648.1| HepA-related protein HARP [Mus musculus]
          Length = 900

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQ 102
            +  +      ++ +  +++       +V  H    L  + K       + +  D    +
Sbjct: 661 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSCQR 719

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                   +      +   GL      +++VF  L+W+     Q  +R+      + G  
Sbjct: 720 FQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-----HRIGQT 773

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
            +V ++YL+A+ T D+ +   ++ K
Sbjct: 774 NSVSIHYLVAKGTADDYLWPLIQEK 798


>gi|326384403|ref|ZP_08206083.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196748|gb|EGD53942.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1164

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 29/167 (17%)

Query: 45  EKHWKEV----HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK------------AF 88
           ++ W E+     D K+  L    +      +IV       L  L                
Sbjct: 481 DRKWSELRGLLTDRKL--LRD--KSGRPRKLIVFTEHKDTLDYLTAQIRNVLGSDDAVLT 536

Query: 89  PQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T   D   I+E   NE    L+     + G GLNLQ   +++V + L W+    +Q
Sbjct: 537 IHGGTRRADRVAIREQFTNEPD-RLVLVATDAAGEGLNLQ-AAHLMVNYDLPWNPNRLEQ 594

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              RI      + G K    ++ ++A  T +  V  RL  K   Q  
Sbjct: 595 RFGRI-----HRIGQKNVCRLWNIVAAETREGQVYTRLLAKMEQQRA 636


>gi|291460281|ref|ZP_06599671.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417036|gb|EFE90755.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 1194

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 24/162 (14%)

Query: 52  HDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAF---------------PQGRT 93
            D K   +  +I++    +   +I+   F   L+ L++                  + R 
Sbjct: 683 DDPKFDRMLEVIQEKQTTDNNRVIIFSSFRHTLSYLREKLTAQGIRVGQVDGSVPDEERY 742

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +   N   + +LF        GL+ Q+  + ++ + L W+    +Q I RI  
Sbjct: 743 KLRQRFLLDRDNVNAVDVLFFS-EVGCEGLDYQF-CDTMINYDLPWNPMRIEQRIGRID- 799

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R+      V +Y +I Q TID ++  R  +K  + +  +
Sbjct: 800 ---RRGQKSDTVKIYNMITQGTIDAVIYDRCLSKIGVFEASI 838


>gi|315652132|ref|ZP_07905130.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485624|gb|EFU76008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 1191

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 24/163 (14%)

Query: 51  VHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQE 103
           + D K   L  I+ +    +   IIV   F   L  L+K   +       +D      + 
Sbjct: 679 IDDPKFMRLLEIVNQKQKEDNNRIIVFSSFRHTLGYLKKNLKKHGIRVGQVDGSVPDEER 738

Query: 104 WN-----------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +N           +  I +L         GL+ Q+  + ++ + L W+    +Q I RI 
Sbjct: 739 FNLRKRFLLDRNEKDAIDVLLFS-EVGCEGLDYQF-CDSMINYDLPWNPMRIEQRIGRID 796

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R+      V +Y +I ++TID ++  R  +K  + +  +
Sbjct: 797 ----RRGQKSDTVKIYNMITEDTIDAVIYDRCLSKIGVFEESI 835


>gi|302757351|ref|XP_002962099.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
 gi|300170758|gb|EFJ37359.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
          Length = 616

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 19/139 (13%)

Query: 55  KIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTI------- 101
           K+ A++  +          +V  H ++ +  + +   +       +D D   +       
Sbjct: 472 KVPAVQDYLSTMLETNCKFLVFAHHHTMVNGIDEHLKKKNVEFIRIDGDTSPVIRQSMVD 531

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  N  K+        + G GL L    + ++F  + W   +  Q  +R       + G 
Sbjct: 532 KFQNNEKVRAAVLSIRAAGLGLTLT-SASTVIFAEMSWTPGDLIQAEDR-----AHRIGQ 585

Query: 162 KRAVFVYYLIAQNTIDELV 180
           + +V +YYL A +TID+ +
Sbjct: 586 RSSVNIYYLHAPDTIDDFI 604


>gi|302658392|ref|XP_003020900.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291184770|gb|EFE40282.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 1167

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 47   HWKEVHDEKIK-ALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGR 92
                    K+   LE +++  +   II+ Y            L       R+     +  
Sbjct: 865  KVIGTVSAKLSYLLEKVLQFQDTEKIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKAS 924

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +NEG+ + +L        HGL++     + +  +  WD     Q I+R 
Sbjct: 925  QK---SEYLSTFNEGESVRVLLMDLRQASHGLHIAIASRVFI-VNPIWDPNIESQAIKR- 979

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  +    R V+V  L+ ++T+++ +L+R +           K  + D  ++++
Sbjct: 980  ----AHRISQTRPVYVETLVLKDTLEDKMLRRRKAMTSVEMQHAEKDMLNDGTMSSI 1032


>gi|302498861|ref|XP_003011427.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291174978|gb|EFE30787.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 1167

 Score = 65.0 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 47   HWKEVHDEKIK-ALEVIIEKANAAPIIVAY-------HFNSDLA------RLQKAFPQGR 92
                    K+   LE +++  +   II+ Y            L       R+     +  
Sbjct: 865  KVIGTVSAKLSYLLEKVLQFQDTEKIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKAS 924

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                    +  +NEG+ + +L        HGL++     + +  +  WD     Q I+R 
Sbjct: 925  QK---SEYLSTFNEGESVRVLLMDLRQASHGLHIAIASRVFI-VNPIWDPNIESQAIKR- 979

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                  +    R V+V  L+ ++T+++ +L+R +           K  + D  ++++
Sbjct: 980  ----AHRISQTRPVYVETLVLKDTLEDKMLRRRKAMTSVEMQHAEKDMLNDGTMSSI 1032


>gi|304439383|ref|ZP_07399295.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372165|gb|EFM25759.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 55

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 44 EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           +K   ++HD K+ ALE +IE AN  P+++AY F  DL R+++ 
Sbjct: 9  AKKESIQIHDRKLDALEDLIEGANGKPVLIAYWFKHDLTRIKEY 52


>gi|255320269|ref|ZP_05361454.1| Non-specific serine/threonine protein kinase [Acinetobacter
            radioresistens SK82]
 gi|255302708|gb|EET81940.1| Non-specific serine/threonine protein kinase [Acinetobacter
            radioresistens SK82]
          Length = 1067

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 35/181 (19%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS---DLARL--QKAFPQG 91
            N ++Y   +  W       IK LEVI  K     +I+   F      L R+  ++     
Sbjct: 888  NASIYESPKVDWL------IKTLEVI--KTKNEKVIIFTEFRDIQVFLKRILLERFGLNV 939

Query: 92   RTLDKDPCT-----------IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             T++ D  T           I ++       ++     + G G+N+Q   N ++ ++  W
Sbjct: 940  TTVNGDSNTSSKKGLTRQNLIDKFQATSGFNVIILSTTAVGFGVNIQK-ANHVIHYTRSW 998

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYY-LIAQN---TIDELVLQRLRTKSTIQDLLL 195
            +  +  Q  +R       + G  + VFVYY  IA N   T +  + + L +K  + D +L
Sbjct: 999  NPAKEDQATDR-----AYRIGQDKEVFVYYPSIAANDFDTFEIKLDRLLSSKRALADDML 1053

Query: 196  N 196
             
Sbjct: 1054 Q 1054


>gi|126323929|ref|XP_001378454.1| PREDICTED: similar to mDomino [Monodelphis domestica]
          Length = 3065

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +A    +  Q+ N  V    E    +    K++AL ++++K  +    +++       L 
Sbjct: 1756 TAPYLQQLHQITNLKVLQFPELRLVQYDSGKLEALAILLQKLKSEGRRVLILSQMILMLD 1815

Query: 83   RLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
             L+              +    ++    ++ +N+ K I        S   G+NL    + 
Sbjct: 1816 ILEMFLDFHYLTYVRVDENANSEQRQELMKSFNKDKRIFCAILSTHSRSTGINLVE-ADT 1874

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1875 VVFYDNDLNPVMDAKAQEWCD-----RIGRSKDIHIYRLVSGNSIEEKLLK 1920


>gi|328725886|ref|XP_003248657.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 185

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 48  WKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDK 96
            K     KI+     L  +I +     +++  +++  L  L +A  Q        +T  K
Sbjct: 20  IKGSFSTKIECVTLKLMELISQDPNVKVLIFSNWDKALNLLGEALDQNSISYRILKTGTK 79

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              T++++  +  I  L    +    GLNL      + F     +  +  Q I  I    
Sbjct: 80  YKKTLKDFKLKKNINALLVKLSVGSKGLNLTE-ATRIFFMDPIINKADEHQAIGTI---- 134

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELV 180
             + G  +  FV+  I +++I+E +
Sbjct: 135 -HRLGQTKPTFVHNFIIRDSIEENI 158


>gi|331235570|ref|XP_003330445.1| DNA repair protein rad-5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309309435|gb|EFP86026.1| DNA repair protein rad-5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1289

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 51   VHDEKIKALEV-IIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTL----------DK 96
            V   K++AL   +I+     P    +V   F   L  +++   + R             K
Sbjct: 1177 VSSTKLEALIDHLIKARQTDPGFSAVVFSQFTGFLDLIEQVLKRDRFRFVRLDGTLSTRK 1236

Query: 97   DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++ +N+ + P +L       G GLNL    N +     WW+     Q IE
Sbjct: 1237 RKKALETFNDPRKPCILVCSLKVAGVGLNL-IKANRVYMMDTWWNEAIENQAIE 1289


>gi|211906288|gb|ACJ11662.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +QQ   R+      + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 1   YQQFNARL-----HRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKDI 54


>gi|237840979|ref|XP_002369787.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|211967451|gb|EEB02647.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|221483703|gb|EEE22015.1| DNA repair protein, putative [Toxoplasma gondii GT1]
          Length = 1733

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     +   GLNL    +       WW+ +   Q ++RI      + G  + V V   
Sbjct: 1526 ILLCSLKAGNVGLNLTR-ASRCYLMDGWWNPQVENQAMKRIW-----RFGQDKPVKVVRF 1579

Query: 171  IAQNTIDELVLQRLRTK 187
            +   T++E + +    K
Sbjct: 1580 VCVRTVEERLEEIKEFK 1596


>gi|189199576|ref|XP_001936125.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983224|gb|EDU48712.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 553

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIP-LLFAHPASCG 120
           I+   + + L      F +               K    + ++ E     +L     +  
Sbjct: 392 IIFSFWKTTLDITASLFDKYSISCFRIHGTLSASKRSRILTDFEESSTTRVLLITLGTGA 451

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G N     NI+      W+     Q I R+      + G +RAV +   I ++TI+E V
Sbjct: 452 VGSNKLKAANIIHIVEPQWNPSVENQAIGRVI-----RLGQERAVTIIRYIMKDTIEEAV 506

Query: 181 LQRLRTKSTIQ 191
             R   K  + 
Sbjct: 507 QSRQLRKLQLA 517


>gi|170290318|ref|YP_001737134.1| helicase domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174398|gb|ACB07451.1| helicase domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 975

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 22/162 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKA-----FPQGRTLD 95
            +  +      D K+KAL  ++++    + +IV   +   L  + K      +P+G  L 
Sbjct: 384 VEMARDIMREGDSKLKALISLLDEVKEDSKVIVFTEYKDTLDYIMKKLLNEGWPEGSILR 443

Query: 96  KDPCTIQE----------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +          +       +         GLNLQ   +IL+ + + W L + +
Sbjct: 444 LSSDETADEKKFMEIRRAFERDPRARVLIATDVAAEGLNLQV-AHILINYEVPWSLIKLE 502

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           Q I R+      + G +R V +Y L   N  D   L+ +  K
Sbjct: 503 QRIGRVW-----RLGQRREVEIYTLFMANKADSTALRSIYEK 539


>gi|331013606|gb|EGH93662.1| SNF2-related:helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 316

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 179 KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDA 238

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 239 FQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 292

Query: 163 RAVFVYYLIAQNTIDELVLQRL 184
           R V V   +A++TID+ + Q L
Sbjct: 293 RVVVVKIPLAEDTIDQQLWQML 314


>gi|317144593|ref|XP_001820221.2| SNF2 family helicase [Aspergillus oryzae RIB40]
          Length = 1183

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 44   EEKHWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLA------RLQKAFP 89
             +         K+  L   ++E      II+ Y            L       R+  +  
Sbjct: 898  AQTKLVATTSAKLTYLLDRVLELHTEEKIIIFYDNNNSAFWIAEGLELLGVDFRIYASTL 957

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +         +E     + +L        HGL++     + +  +  W      Q I+
Sbjct: 958  KPKVRAAYLELFREQE--DVRVLLMDLHQASHGLHIANASRVFI-VNPIWQPNVESQAIK 1014

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR---TKSTIQ 191
            R       + G  R VFV  L+ + T+++ +L+R +    K   Q
Sbjct: 1015 R-----AHRIGQTRPVFVETLVLKGTLEDKMLERRKAMSEKEMQQ 1054


>gi|238485918|ref|XP_002374197.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220699076|gb|EED55415.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 806

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 44  EEKHWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLA------RLQKAFP 89
            +         K+  L   ++E      II+ Y            L       R+  +  
Sbjct: 521 AQTKLVATTSAKLTYLLDRVLELHTEEKIIIFYDNNNSAFWIAEGLELLGVDFRIYASTL 580

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           + +         +E     + +L        HGL++     + +  +  W      Q I+
Sbjct: 581 KPKVRAAYLELFREQE--DVRVLLMDLHQASHGLHIANASRVFI-VNPIWQPNVESQAIK 637

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR---TKSTIQ 191
           R       + G  R VFV  L+ + T+++ +L+R +    K   Q
Sbjct: 638 R-----AHRIGQTRPVFVETLVLKGTLEDKMLERRKAMSEKEMQQ 677


>gi|83768080|dbj|BAE58219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1021

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 44  EEKHWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLA------RLQKAFP 89
            +         K+  L   ++E      II+ Y            L       R+  +  
Sbjct: 736 AQTKLVATTSAKLTYLLDRVLELHTEEKIIIFYDNNNSAFWIAEGLELLGVDFRIYASTL 795

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           + +         +E     + +L        HGL++     + +  +  W      Q I+
Sbjct: 796 KPKVRAAYLELFREQE--DVRVLLMDLHQASHGLHIANASRVFI-VNPIWQPNVESQAIK 852

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR---TKSTIQ 191
           R       + G  R VFV  L+ + T+++ +L+R +    K   Q
Sbjct: 853 R-----AHRIGQTRPVFVETLVLKGTLEDKMLERRKAMSEKEMQQ 892


>gi|220930423|ref|YP_002507332.1| helicase [Clostridium cellulolyticum H10]
 gi|220000751|gb|ACL77352.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 460

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE------WNE 106
           D ++K    I +  +    ++    NS+   L+ A P    +        +      +++
Sbjct: 275 DLRVKKAADIAQSVDGQ-CLIWCDLNSESEMLKNAIPGAVEVKGSDSPEHKKTAMLGFSK 333

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++  L   P+  G G+N Q   + ++F  L    E++ Q + R       + G K+ V 
Sbjct: 334 GEVKDLVTKPSIAGFGMNWQTCSD-MIFVGLSDSYEQYYQAVRRC-----YRFGQKKPVN 387

Query: 167 VYYLIA--QNTIDELVLQRLRTKSTIQDLLLNALK 199
           V+ +I+  +  + + + ++      +Q+ ++   K
Sbjct: 388 VHIVISAKEGCVKDNIERKTSDSLKMQNAMIEYTK 422


>gi|125984352|ref|XP_001355940.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
 gi|54644258|gb|EAL32999.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
          Length = 747

 Score = 65.0 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI--QEWNEG 107
           L+ ++++      IV  H    +  +               G+T       +     N+ 
Sbjct: 520 LKSLVKEQ--KKFIVFAHHRVMMDAISDCLSALNVHHIRIDGQTRSDLRADMVSAFQNKS 577

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     ++VF  L W+     Q       +R  + G  + V  
Sbjct: 578 SCRVAVLSLKACNAGITLT-AAELIVFAELDWNPSTLAQA-----ESRAHRIGQTKTVIC 631

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
            YL+A  T D+ + + L  K  +   +
Sbjct: 632 RYLLANETADDTIWKMLINKQKVLSQV 658


>gi|149710126|ref|XP_001490055.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 [Equus
           caballus]
          Length = 948

 Score = 65.0 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A    +   K  Q    A+     +  +      I+ +  ++E       +V  H    L
Sbjct: 681 AAKEMTTKNKTKQQQKEALILFFNRTAEAKIPCVIEYILDLLES-GREKFLVFAHHKVVL 739

Query: 82  ARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             + K   +             + D++    Q     +  +      +   GL      +
Sbjct: 740 DAITKELERKHVQHIRIDGATSSADREALCQQFQLSERHAVAVLSITAANMGLTF-SSAD 798

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++VF  L+W+     Q  +R+      + G  R+V ++YL+A+ T D+ +   ++ K
Sbjct: 799 LVVFAELFWNPGVLIQAEDRV-----HRIGQSRSVGIHYLVARGTADDYLWPLIQEK 850


>gi|148553123|ref|YP_001260705.1| helicase domain-containing protein [Sphingomonas wittichii RW1]
 gi|148498313|gb|ABQ66567.1| helicase domain protein [Sphingomonas wittichii RW1]
          Length = 1167

 Score = 65.0 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 21/185 (11%)

Query: 17  GENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            E +E      +T+K L+ +A G +    +  W +++      L  +    N   +I+  
Sbjct: 456 AETVEQLALEVETLKGLEAMALGVLRSGVDTKWSQLNRILDDDLM-VDAAGNRRKLIIFT 514

Query: 76  HFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                L  L                   G + ++    I+ + + K  L+     + G G
Sbjct: 515 EPKDTLHYLLDKVRARLGNAEAVDVIHGGVSREERRKVIERFMQDKDLLVLIANDAAGEG 574

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ G +++V + L W+  + +Q   RI      + G      ++ L+A +T +  V  
Sbjct: 575 VNLQRG-HLMVNYDLPWNPNKLEQRFGRI-----HRIGQTEVCHLWNLVAADTREGEVYA 628

Query: 183 RLRTK 187
           RL  K
Sbjct: 629 RLLEK 633


>gi|237722627|ref|ZP_04553108.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229448437|gb|EEO54228.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 1139

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 27/180 (15%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSD 80
             A +  +  ++AN     ++E       ++K   L+ +++     N   +++       
Sbjct: 459 TEAKEVKRLYEMANSLYNQNQE-------EKKYIELKELLKSQGVINGEKLVIFTEHKDT 511

Query: 81  LARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           L  L++              G ++D+      ++   +  +L A   + G G+NLQ+   
Sbjct: 512 LLYLRERLSNNGYKVAVIHGGLSVDERRQAQWDFMSPETQILIA-TDAAGEGINLQF-CR 569

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +L+ + + W+    +Q + RI      + G K  V V+ ++A NT +  VL RL  K  I
Sbjct: 570 LLINWDIPWNPNRLEQRMGRI-----HRYGQKNDVLVFNVVADNTREGQVLSRLLIKLDI 624


>gi|221484235|gb|EEE22531.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 1345

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 34/189 (17%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           + +V   ++         KI A+E I+         ++V     + L  ++    +   +
Sbjct: 447 SDSVAEGDDAESLLRDSSKIAAVEAILSFYLPRQEKVVVFSFSTAMLDLVEDYLDEKGIV 506

Query: 95  ----------DKDPCTIQEW------NEGKIP---------LLFAHPASCGHGLNLQYGG 129
                      +    I  +      N  + P         +      + G+GL L +  
Sbjct: 507 SARLDGRMGDGERRAAIAAFSAQPSENARQSPQGSHEACAAVFLVSVRAGGYGLTLSHCA 566

Query: 130 NILVFF--SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++ VF       + +  +Q I R+      + G  + V V  LI ++T++E++  R R K
Sbjct: 567 SVCVFLEGGGDGNPQVERQAIARL-----YRQGQTKKVKVIRLITRSTVEEVMYWRGRQK 621

Query: 188 STIQDLLLN 196
             +   +L+
Sbjct: 622 LKLVADVLS 630


>gi|164661227|ref|XP_001731736.1| hypothetical protein MGL_1004 [Malassezia globosa CBS 7966]
 gi|159105637|gb|EDP44522.1| hypothetical protein MGL_1004 [Malassezia globosa CBS 7966]
          Length = 1610

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 17/139 (12%)

Query: 63   IEKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            I+       +V   F         N +   L  A   G    +    +  +  +  + +L
Sbjct: 1384 IQCTTGEKSLVFSSFARGLDLVASNLERHGLAYARVDGTGGKRSSAAVHAFQHKPDVRVL 1443

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +     Q I R+      + G  R  +VY  + 
Sbjct: 1444 LLHSEAQSAGLNL-LAATHMFLLEPLLNHAMELQAIGRV-----HRIGQTRPTYVYGYMV 1497

Query: 173  QNTIDELVLQ-RLRTKSTI 190
            ++T++E ++      K ++
Sbjct: 1498 RDTVEERIVALAAERKQSL 1516


>gi|152986239|ref|YP_001351355.1| SNF2 family DNA/RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961397|gb|ABR83422.1| superfamily II DNA/RNA helicase, SNF2 family [Pseudomonas
           aeruginosa PA7]
          Length = 1010

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 44/231 (19%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA-------NGAVYYDEEKHWKEV-- 51
           ++ Y +                  + +   +   ++         A+Y ++ KH +++  
Sbjct: 772 LQAYDEVLDSYRARRASAEDMRGTALAALTQLRSISLHPRLENESALYCEDGKHARQLMM 831

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCT--- 100
              K+  L  ++++  +    +I+       L R+ K +           ++ D      
Sbjct: 832 ESGKLAVLLQLLDEIRSKGEKVILFMMTKR-LQRVLKLWLDQIYDLNVAVINGDTQAVAT 890

Query: 101 ----------IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I E+       +L   P + G GL +  G N +V     W+  +  Q  +
Sbjct: 891 RAEDMTRKKLIAEFEAKSGFNILIMSPVAAGVGLTV-IGANHVVHLERHWNPAKEAQASD 949

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLL 195
           R+      + G  + VF+ +L A      ++ D  + + LR K  ++D ++
Sbjct: 950 RV-----YRIGQTKPVFI-HLPAVTHPQFDSFDVHLDRLLRGKLMLKDAVV 994


>gi|326426540|gb|EGD72110.1| hypothetical protein PTSG_11548 [Salpingoeca sp. ATCC 50818]
          Length = 930

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 82/228 (35%), Gaps = 35/228 (15%)

Query: 3   QYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKA 58
              + ++++   L   + + +    +  K  K L+   N     D + + ++    ++  
Sbjct: 212 MIRRLKKDVLSQLPPKRRQRVTVEVTNKKLCKLLEAGFNELKRLDSDPNTQQFESHRL-- 269

Query: 59  LEVIIEKAN-----------AAPIIVAYHFNSDLARLQKA---------FPQGRT-LDKD 97
           L+ +    +               +V  +  + L  L++A            G T + + 
Sbjct: 270 LQSLFHDTSTAKMDSGMCDAGGKFLVFAYHLNMLKALEEAVASQGVEYIMIVGETPVHER 329

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++++    +  +      +   G+ L    + +VF  L W     +Q  +R      
Sbjct: 330 HDMVKKFQASNRCRVAILSLLAASQGITLT-AASTVVFAELHWTPGIIEQAEDR-----A 383

Query: 157 RQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G     V ++YL+A NT+D+++   L  K  +    LN  +   +
Sbjct: 384 HRIGQTDTSVNIHYLVAPNTLDDILWSTLSRKVGVVSTTLNGERSRLV 431


>gi|282598823|ref|YP_003359142.1| putative helicase [Clavibacter phage CMP1]
 gi|262212611|gb|ACY35947.1| putative helicase [Clavibacter phage CMP1]
          Length = 533

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-----AVYYDEEKHWKEVHDEKI 56
           +   + + +    L+     A    +  ++  Q+            DE++      D + 
Sbjct: 309 RMIKQMETDYIAWLEDNPTVAKLPVTARMRIRQMTLAVPSVIPATEDEKEEVYFDVDCES 368

Query: 57  KALEVIIEKANAAP---IIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQ 102
             L+ I E   A P   ++        LA   + F                  +D    +
Sbjct: 369 PTLDDIEEWLKAHPDEKVLFLAQSQKFLAEATRRFKAKGYQAFEWSGMASEASRD-VAKE 427

Query: 103 EWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEE-HQQMIERIGVTRQRQAG 160
           ++  G + L+F    S G G++ LQ   NIL      W LE       E     R  + G
Sbjct: 428 QFKNGSLQLVFGQVQSIGTGIDGLQSATNIL------WSLETGDDATTEIQAEGRLDRRG 481

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R V     I   +IDE V+ +   K    +    +LK+E + 
Sbjct: 482 QVRGVVHIKSIRAGSIDENVMGKQLEKRLAMNA---SLKRECVG 522


>gi|291461005|ref|ZP_06026388.2| SNF2-related protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379579|gb|EFE87097.1| SNF2-related protein [Fusobacterium periodonticum ATCC 33693]
          Length = 1166

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 21/125 (16%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
           ++ Y F+ ++  +     +          + ++ + +   ++   P + G GLN+    N
Sbjct: 844 VIKYWFDIEVGIVNGDADKTS----RRRILDDFRKKEGFNVIILSPEAAGVGLNIVE-AN 898

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----------TIDELV 180
            ++ ++  W+  + +Q  +R       + G K+ V+VYY I  N          T+DE +
Sbjct: 899 HVIHYTRHWNPAKEEQATDR-----AYRIGQKKDVYVYYPIISNVEKIERDEYRTVDEWI 953

Query: 181 LQRLR 185
            ++L 
Sbjct: 954 RKQLE 958


>gi|154500303|ref|ZP_02038341.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
 gi|150271035|gb|EDM98309.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
          Length = 1182

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 52  HDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC 99
            D K +A+  +IE+  A     +I+   F   LA L++             G   D+D  
Sbjct: 673 DDPKFEAMLRVIEEKQAESNNKVIIFSSFKHTLAYLRRKLESQGLRVSQIDGSVRDEDRV 732

Query: 100 TIQEW--NEGKIPLLF---AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +++    +   P              GL+ Q+  ++++ + L W+    +Q I RI   
Sbjct: 733 LLRDRFKQDRDCPEALDILLFTEVGCEGLDYQF-CDMMINYDLPWNPMRIEQRIGRID-- 789

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             R+      V +Y +I   TID  +  R
Sbjct: 790 --RRGQKSEVVNIYNMITSGTIDADIYSR 816


>gi|323449406|gb|EGB05294.1| hypothetical protein AURANDRAFT_17107 [Aureococcus anophagefferens]
          Length = 92

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +L A  A+ G GLN+    N+L F   WW+   H Q ++R       + G  R V
Sbjct: 7   APSVNVLLATVATAGVGLNIVEANNVL-FLDRWWNPTVHDQAMDR-----THRLGQTRPV 60

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +L   +T+DE++    + KS    ++L +
Sbjct: 61  DVRFLDGVDTVDEVMRAINKFKSDNAQVILAS 92


>gi|154340832|ref|XP_001566369.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063692|emb|CAM39877.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1591

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 17/145 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQE-------WNEGKIPL 111
           I +     +++   + S L  + +   +      +L       +         +     +
Sbjct: 504 IVREQREKVVIFSQYLSHLRLMAQLLAREGISAPSLTGTSSDTERCRCIAELQSNDACRV 563

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+ L    +  +   + W+  +  Q   R+      + G  R V VY L 
Sbjct: 564 LLCSVRAGGVGIKLT-AASHCILLDVSWNPTDDVQATYRL-----YRYGQLRPVNVYRLA 617

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              T + +V      ++ +Q  + +
Sbjct: 618 TWGTSEHVVFAYALQRAWLQKKIAD 642


>gi|322815488|gb|EFZ24135.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 142

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           L +    +Q + ++  +  +     + G GLNLQ   N ++    WW+     Q  +R  
Sbjct: 25  LSQRQAVLQAFLHDPGVRAILISLKAGGEGLNLQV-ANHVILVDPWWNPAVEMQAAQR-- 81

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V V   + + +++E ++     K  + +  ++ 
Sbjct: 82  ---AHRIGQTKPVRVVRFVVERSVEERMMDLQDKKMLVIEGTIDG 123


>gi|195161250|ref|XP_002021481.1| GL26533 [Drosophila persimilis]
 gi|194103281|gb|EDW25324.1| GL26533 [Drosophila persimilis]
          Length = 747

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTI--QEWNEG 107
           L+ ++++      IV  H    +  +               G+T       +     N+ 
Sbjct: 520 LKSLVKEQ--KKFIVFAHHRVMMDAISDCLSALNVHHIRIDGQTRSDLRADMVSAFQNKS 577

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     ++VF  L W+     Q       +R  + G  + V  
Sbjct: 578 SCRVAVLSLKACNAGITLT-AAELIVFAELDWNPSTLAQA-----ESRAHRIGQTKTVIC 631

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A  T D+ + + L  K  +
Sbjct: 632 RYLLANETADDTIWKMLINKQKV 654


>gi|157817600|ref|NP_001101692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Rattus norvegicus]
 gi|221222728|sp|B4F769|SMAL1_RAT RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|149016063|gb|EDL75309.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 (predicted) [Rattus
           norvegicus]
 gi|195540216|gb|AAI68154.1| Smarcal1 protein [Rattus norvegicus]
          Length = 910

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD 95
            +  +      I+ +  ++E       +V  H    L  + K             G T  
Sbjct: 659 NRTAEAKIPCVIEYILDLLES-GREKFLVFAHHKVLLDAIAKELERKNVQHIRIDGSTPS 717

Query: 96  KDPCTI-QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D   + Q++   K   +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 718 ADREDLCQQFQLSKGHTVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLIQAEDRV-- 774

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 775 ---HRIGQTNSVGIHYLVAKGTADDYLWPLIQEK 805


>gi|310790973|gb|EFQ26506.1| hypothetical protein GLRG_01650 [Glomerella graminicola M1.001]
          Length = 1142

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 22/163 (13%)

Query: 43   DEEKHWKEVH--DEKIKALEV-IIEKANAAPIIVAY------HFNS-DLARL-QKAFPQG 91
            D+ K  + V     K+  L   I+E      +I+ Y       + +  L  +  + F   
Sbjct: 860  DDLKKARLVSTVSAKLSYLIDAIVEHQEREKLIIFYENENVAWYLAGILEVIHVRHFIYA 919

Query: 92   RTL--DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            + L  ++    I  +N   ++ ++         GL++    + + F +   + +   Q I
Sbjct: 920  KKLSYERKMSYINTFNNDPELRVILMDLTQAAVGLDM-KAASRIYFINPVLNPQIQTQAI 978

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             R      R+   ++ V V  L+ + +I+E++++R   KS  Q
Sbjct: 979  GR-----ARRISQQKPVTVETLVLRGSIEEVIVER--KKSMSQ 1014


>gi|299471940|emb|CBN79620.1| harp (smarcal1)-related [Ectocarpus siliculosus]
          Length = 1197

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI--QEWNEGKIPLL 112
           +      ++V  H    +  L++   +         G T  K    I  +      + ++
Sbjct: 784 KAKEPRKLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVI 843

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLI 171
                + G G+ L    +  VF  L+W      Q  +RI      + G K + V + YL+
Sbjct: 844 LLSITAAGVGITLT-AASCAVFAELYWTPGSMAQAEDRI-----HRIGQKAKTVLIRYLV 897

Query: 172 AQNTIDELVLQRLRTKSTI 190
            + T+D+ V+  +  K T 
Sbjct: 898 GRGTMDDGVISTIHRKQTT 916


>gi|258652903|ref|YP_003202059.1| helicase domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258556128|gb|ACV79070.1| helicase domain protein [Nakamurella multipartita DSM 44233]
          Length = 648

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAG 160
            E+  G++PLL     + G G+ L  G +   + +   W   E  Q  +R       + G
Sbjct: 520 DEYQAGRLPLLVCSIPTVGVGVTLTRGCD--AWMAETSWTPAEISQAEDRQW-----RRG 572

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V   I   T+DE V   L  K+   D +L  
Sbjct: 573 QSRNVVVTTFIGLGTLDERVQDSLGRKADDLDQVLTG 609


>gi|219848036|ref|YP_002462469.1| helicase domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542295|gb|ACL24033.1| helicase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 966

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 26/158 (16%)

Query: 50  EVHDEKIKALEVII---EKANAAP---IIVAYHFNSDLARLQKAFPQGRT---------- 93
           +  D K +AL   I   +     P   ++V   F      L +   Q             
Sbjct: 477 QGPDAKAEALLDWIYRLQAEEGDPNLKVLVFTEFVPTQEMLYEFLTQRGFTVVCLNGAMD 536

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +         + N  +I        + G GLNLQ+  ++++ + + W+    +Q I R+ 
Sbjct: 537 MAARKQVQDAFANNARI---LISTDAGGEGLNLQF-CHVVINYDIPWNPMRLEQRIGRVD 592

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                + G    V     + Q++++  + + L  K  +
Sbjct: 593 -----RIGQTHTVRAVNFVFQDSVEHRIREVLEQKLAV 625


>gi|171692537|ref|XP_001911193.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946217|emb|CAP73018.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1920

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 47/158 (29%)

Query: 51   VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTL--DKD 97
                K+  L+ ++ +       +++ +     +  +++             G T   D+ 
Sbjct: 1662 TDSGKLAKLDELLRQLKEGGHRVLLYFQMTRMIDLMEEYLTYCNYRYCRLDGSTKLEDRR 1721

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                      +I +      +                                  + R  
Sbjct: 1722 DTVSDFQTRPEIFIFLLSTRA----------------------------------MDRAH 1747

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1748 RLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1785


>gi|86739797|ref|YP_480197.1| helicase-like protein [Frankia sp. CcI3]
 gi|86566659|gb|ABD10468.1| helicase-like [Frankia sp. CcI3]
          Length = 829

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 32/194 (16%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L  E IE      KT K ++ A        ++ W E+ +      EV+   AN  
Sbjct: 442 QTVEELNAELIELAE-LVKTAKIVRDAG------TDRKWTELSNILQD--EVLTADANGW 492

Query: 70  P--IIVAYHFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEW-NEGKIPLLF 113
           P  +I+       L  L+             +A   G    +     +E+     + +L 
Sbjct: 493 PRKLIIFTEHRDTLDYLRARIGSLLGKPDAVRAIHGGVRRGERRQITEEFTKNRDVQILL 552

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A   + G GLNLQ   +++V + L W+    +Q   RI      + G  +   ++ L+A 
Sbjct: 553 A-TNAAGEGLNLQ-AAHLMVNYDLPWNPNRIEQRFGRI-----HRIGQDKVCRLWNLVAS 605

Query: 174 NTIDELVLQRLRTK 187
           NT +  V  RL  K
Sbjct: 606 NTREGEVFTRLLAK 619


>gi|328848807|gb|EGF98004.1| hypothetical protein MELLADRAFT_84096 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     +  N   I        + G G N+    + +      W+ +  QQ I+R+   
Sbjct: 90  ERTLQLNRFKNNNNIEAFIVSIEAGGVGFNMTC-TDEVYLMDAHWNPQIVQQAIDRL--- 145

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELV 180
              Q G    V VY+++A  ++++ +
Sbjct: 146 --HQIGQTHPVNVYHVVAGESVEQHL 169


>gi|323451563|gb|EGB07440.1| hypothetical protein AURANDRAFT_27712 [Aureococcus anophagefferens]
          Length = 205

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            F      D+    + ++  G   +L A   S G GLN+      +VF   W++ + H+Q
Sbjct: 11  RFDGDVRADERGAVLDDFRAGGADVLLATVHSGGTGLNITR-ATTVVFTDRWFNPQVHEQ 69

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            ++R       + G  + V   +  A  TID+
Sbjct: 70  AVDRC-----HRIGQTKPVAAAFYDAALTIDD 96


>gi|297711711|ref|XP_002832469.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like,
           partial [Pongo abelii]
          Length = 90

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    + ++F    ++ +   Q   R       + G  ++V V  LI ++T++E+
Sbjct: 1   GVGMNLT-AADTVIFVDSDFNPQNDLQAAAR-----AHRIGQNKSVKVIRLIGRDTVEEI 54

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V ++  +K  + ++++  
Sbjct: 55  VYRKAASKLQLTNMIIEG 72


>gi|237739551|ref|ZP_04570032.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229423159|gb|EEO38206.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 1166

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 21/125 (16%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
           ++ Y F+ ++  +     +          + ++ + +   ++   P + G GLN+    N
Sbjct: 844 VIKYWFDIEVGIVNGDADKTS----RRRILDDFRKKEGFNVIILSPEAAGVGLNIVE-AN 898

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----------TIDELV 180
            ++ ++  W+  + +Q  +R       + G K+ V+VYY I  N          T+DE +
Sbjct: 899 HVIHYTRHWNPAKEEQATDR-----AYRIGQKKDVYVYYPIISNVERIERDEYRTVDEWI 953

Query: 181 LQRLR 185
            ++L 
Sbjct: 954 RKQLE 958


>gi|189218338|ref|YP_001938980.1| Superfamily II DNA/RNA helicase, SNF2 family [Methylacidiphilum
           infernorum V4]
 gi|189185196|gb|ACD82381.1| Superfamily II DNA/RNA helicase, SNF2 family [Methylacidiphilum
           infernorum V4]
          Length = 940

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 50  EVHDEKIKALEVII------EKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPC 99
           +  D K +AL   I      E      ++V   F          L +   +   L+    
Sbjct: 462 QGPDAKAEALLDWIYRLQVEEGDPDLKVLVFTEFVPTQEMLYEFLTERGFKVVCLNGSMD 521

Query: 100 TIQE---WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +     N   K   +     + G GLNLQ+  ++++ + + W+    +Q I R+    
Sbjct: 522 MEERKRVQNAFAKDARILISTDAGGEGLNLQF-CHVVINYDIPWNPMRLEQRIGRVD--- 577

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G    V     + +++++  V + L  K  +
Sbjct: 578 --RIGQTHTVHAINFVFEDSVEHRVREVLEEKLAV 610


>gi|239826792|ref|YP_002949416.1| helicase [Geobacillus sp. WCH70]
 gi|239807085|gb|ACS24150.1| helicase domain protein [Geobacillus sp. WCH70]
          Length = 1062

 Score = 64.6 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 25/148 (16%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF-----PQGRTLDK-----DPCTIQEWNEGKIPLLFAHP 116
               I++       L  L+K          + + K         ++ +   + P++ A  
Sbjct: 483 KGEKILIFTESTDTLHYLEKKLRAHGVEVAKIIGKFSMEERRKQVERFKH-ECPIMLA-T 540

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G  +NLQ+  N ++ + + W+  + +Q + RI      + G +  VFV+ L+A NT 
Sbjct: 541 DAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI-----HRIGQRNEVFVFNLVAGNTR 594

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETIH 204
           +  VL  L TK       +  ++K+  H
Sbjct: 595 EGDVLLTLMTK-------MEQMRKDLGH 615


>gi|322492699|emb|CBZ27976.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1872

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHF------NSDLARLQKAFP----QGRTLDKDPCTIQE 103
              ++ +E I        ++V   +        D    Q   P       +L +    ++ 
Sbjct: 1673 AFLEVVEEIWRTQPDDGVLVFSKYPTFLKLAHDAVAGQGYAPHMVCGASSLAQRQRAMRA 1732

Query: 104  WN--EGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 G        +LF    S   GLNL +  N ++F     +    QQ + R+     
Sbjct: 1733 MQPPSGDSVLSQRRILFVTSRSANAGLNLTF-ANHVIFLEPNLNPAIEQQAVGRV----- 1786

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             + G  + V V++  A +TI+E++ +R
Sbjct: 1787 HRFGQLKQVIVHHFFAPHTIEEVIYRR 1813


>gi|222637735|gb|EEE67867.1| hypothetical protein OsJ_25679 [Oryza sativa Japonica Group]
          Length = 1390

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG---------------RTLDK 96
             K K +  ++ K++     +++  H  S +  L K                    + L  
Sbjct: 1195 CKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPV 1254

Query: 97   DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N    GK  +L A   +C  G++L  G + LV     W+  + +Q I R   
Sbjct: 1255 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAIAR--- 1310

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 1311 --AFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 1350


>gi|218200306|gb|EEC82733.1| hypothetical protein OsI_27432 [Oryza sativa Indica Group]
          Length = 1770

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG---------------RTLDK 96
             K K +  ++ K++     +++  H  S +  L K                    + L  
Sbjct: 1575 CKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPV 1634

Query: 97   DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N    GK  +L A   +C  G++L  G + LV     W+  + +Q I R   
Sbjct: 1635 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAIAR--- 1690

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 1691 --AFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 1730


>gi|33146888|dbj|BAC79886.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
          Length = 637

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG---------------RTLDK 96
            K K +  ++ K++     +++  H  S +  L K                    + L  
Sbjct: 442 CKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPV 501

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + ++N    GK  +L A   +C  G++L  G + LV     W+  + +Q I R   
Sbjct: 502 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAIAR--- 557

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 558 --AFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 597


>gi|291392203|ref|XP_002712511.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 [Oryctolagus cuniculus]
          Length = 954

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT--LDKDPCTIQEW 104
           I+ +  ++E       +V  H    L  + K             G T   D+D    Q  
Sbjct: 714 IEYILDLLES-GREKFLVFAHHKVVLDAITKELERKHVQHIRIDGSTSSADRDALCQQFQ 772

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  +      +   GL      +++VF  L+W+     Q  +R+      + G   +
Sbjct: 773 LSERHTVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTNS 826

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 827 VGIHYLVAKGTADDYLWPLIQEK 849


>gi|261334482|emb|CBH17476.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 967

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------------KDPCTIQEWN 105
           E ++E      +IV  H    L  ++ A                      +    +  + 
Sbjct: 494 EQLVETNE--KMIVFAHHRVMLDGIRDAIESVNPRKPLDYILICGNTAAAQREELLNHFR 551

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 L       CG GLNL     ++VF  L W+   H Q  +R+      + G   +
Sbjct: 552 TSPTCHLAVLSMLVCGVGLNLTC-ATMVVFTELDWNPCTHLQCEDRV-----HRIGQSSS 605

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            F+ YL+A+ T D ++   L+ K ++   LL 
Sbjct: 606 CFIKYLLAEGTSDTIIWPLLQNKLSVTKALLE 637


>gi|170079584|ref|YP_001736217.1| DEAD/H helicase [Synechococcus sp. PCC 7002]
 gi|169887253|gb|ACB00962.1| DEAD/H helicase [Synechococcus sp. PCC 7002]
          Length = 1111

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 30/176 (17%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF--------------PQGRTLDK 96
           D K   L  I+  E  N    I+   +   L  L+                    + +D 
Sbjct: 793 DTKFAHLLTILRQEFQNRDSAIIFTQYTDTLDFLRGELRHIYDTQVACYSGRSGEKLIDG 852

Query: 97  DPCTI------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +  T+      +E+ +G+I +L     S   GLNLQ  G +L+ + + W+    +Q I R
Sbjct: 853 EWRTVPKERIKREFRQGEIKILLC-TESASEGLNLQTCG-VLINYDMPWNPMRVEQRIGR 910

Query: 151 IGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           I      + G     V ++      T++  V QRLR +      ++ +L+     V
Sbjct: 911 ID-----RIGQTFPRVIIHNFYYDGTVEARVYQRLRDRIHAFSSVVGSLQPILAKV 961


>gi|8778961|gb|AAD49766.2|AC007932_14 Contains similarity to HARP gene from Homo sapiens gb|AF210842. It
           contains SNF2 N-terminal PF|00176 and helicase
           C-terminal PF|00271 domains [Arabidopsis thaliana]
          Length = 592

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            LD     I++  + +I        + G G+ L    + ++F  L W   +  Q  +R  
Sbjct: 441 VLDYLENVIED--KDEIKAAVLSIRAAGVGITLT-AASTVIFAELSWTPGDLIQAEDR-- 495

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G   +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 496 ---AHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 537


>gi|117928024|ref|YP_872575.1| helicase domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648487|gb|ABK52589.1| helicase domain protein [Acidothermus cellulolyticus 11B]
          Length = 933

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 50  EVHDEKIKALEVIIEKANAAP------IIVAYHFNSDLARLQKAFPQ---------GRTL 94
           +  D K +AL   I +  A        ++V   F      L +   +         G   
Sbjct: 455 QGPDAKAEALLDWIYRLQAEKGDPDLKVLVFTEFVPTQEMLYEFLTERGFEVVCLNGSMD 514

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++   +Q+       +      + G GLNLQ+  ++++ + + W+    +Q I R+   
Sbjct: 515 LEERKRVQDTFAKDARI-LISTDAGGEGLNLQF-CHVVINYDIPWNPMRLEQRIGRVD-- 570

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G    V     + +++++  V + L  K  +
Sbjct: 571 ---RIGQTHTVRAINFVFEDSVEHRVCEVLEEKLAV 603


>gi|71755373|ref|XP_828601.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70833987|gb|EAN79489.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 968

 Score = 64.6 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------------KDPCTIQEWN 105
           E ++E      +IV  H    L  ++ A                      +    +  + 
Sbjct: 494 EQLVETNE--KMIVFAHHRVMLDGIRDAIESVNPRKPLDYILICGNTAAAQREELLNHFR 551

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 L       CG GLNL     ++VF  L W+   H Q  +R+      + G   +
Sbjct: 552 TSPTCHLAVLSMLVCGVGLNLTC-ATMVVFTELDWNPCTHLQCEDRV-----HRIGQSSS 605

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            F+ YL+A+ T D ++   L+ K ++   LL 
Sbjct: 606 CFIKYLLAEGTSDTIIWPLLQNKLSVTKALLE 637


>gi|300123786|emb|CBK25057.2| unnamed protein product [Blastocystis hominis]
          Length = 169

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EG 107
             +  +K + LE+I  +     ++  Y     L    +        +K    ++ +  + 
Sbjct: 16  IVIFSQKPRCLEIIASQ-----LLDLYSNIHFLTVTSEL-----CAEKRMEYVEHFQTDN 65

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I +L A    CGHG +L    ++++     ++     Q I+R       + G K AV V
Sbjct: 66  EISILLATTGICGHGFSLT-AASVVILVDHNFNPYVDVQAIDRC-----HRIGQKNAVMV 119

Query: 168 YYLIAQNTIDELVLQ 182
           Y L++    +E +++
Sbjct: 120 YRLVSNEPNEERLMK 134


>gi|288575096|ref|ZP_06393453.1| helicase domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570837|gb|EFC92394.1| helicase domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 955

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 32/177 (18%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA------PIIVAYHFNSD 80
           ++    L LA  A             D K +AL  +I +           +++   F   
Sbjct: 454 AEVNALLDLARSA--------EIAGPDVKTEALMSLIFQLQGEENDDQLKLLIFTEFVPT 505

Query: 81  LARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            A LQ    +             +D+     +++       +     + G GLNLQ+  +
Sbjct: 506 QAMLQTFLEERGIPCAILNGSMSMDERRMAQRDF--RDNARILISTDAGGEGLNLQF-CH 562

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           ++V + L W+    +Q I R+      + G  + V     + +N+++  V + ++TK
Sbjct: 563 VVVNYDLPWNPMRIEQRIGRVD-----RIGQSKIVRAVNFLYENSVEGRVREVIQTK 614


>gi|260818236|ref|XP_002604289.1| hypothetical protein BRAFLDRAFT_125252 [Branchiostoma floridae]
 gi|229289615|gb|EEN60300.1| hypothetical protein BRAFLDRAFT_125252 [Branchiostoma floridae]
          Length = 1645

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 28/185 (15%)

Query: 32   CLQL-ANGAVYY-------DEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNS 79
            C QL A G + Y        E+   K  H  K++A    L++I +K   A  +V   +  
Sbjct: 1409 CRQLTATGDISYVSTEAKQQEDVDVKGSHSTKVEAVVRTLKLIRQKDPTAKSLVFSTWQD 1468

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEG--------KIPLLFAHPASCGHGLNLQYGGNI 131
             L  +  A  +     +    I  + E          I +L     +  HGLN+    ++
Sbjct: 1469 VLDVVATALRENNMEYRAINGIHRFQENITDFKYDSGIGVLLLPLHTGSHGLNIIEATHV 1528

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            L       +  +  Q I R+      + G  +A  V+  + QNTI+E +      K    
Sbjct: 1529 L-LVEPIINPAQEAQAIGRV-----HRIGQTKATVVHRFLVQNTIEERIHAM--KKHISA 1580

Query: 192  DLLLN 196
               ++
Sbjct: 1581 SDSID 1585


>gi|119500356|ref|XP_001266935.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119415100|gb|EAW25038.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 1181

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 51   VHDEKIKALEV-IIEKANAAPIIVAYHFNS---------DLARLQKAFPQGRTLD---KD 97
                K+  L   ++E      II+ Y   +         DL  ++       TL    + 
Sbjct: 887  TTSAKLSYLLSRVMELHTEEKIIIFYDSTNSGVWIAEGLDLLGIEYRM-YASTLSPELRT 945

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                      +I +         HGL++    + + F +  W      Q I+R       
Sbjct: 946  SYLNLFRESEEIRVFLMDLHQASHGLHI-ANASRVFFVNPIWQPNVESQAIKR-----AH 999

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V+V  L+ ++T+++ +L+R   K+  +  +  A K
Sbjct: 1000 RIGQTRPVYVETLVLKDTLEDKMLKR--RKAMSEKEMQEAEK 1039


>gi|310800485|gb|EFQ35378.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1015

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 49   KEVHDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKD 97
            +E +  K+ AL   + E       IV   +   L  +     +             L + 
Sbjct: 861  QEGYSTKMDALIRDVKEDVWTTKSIVFSCWTRTLHLVGMHLERAGVRFAMIDGNCPLSER 920

Query: 98   PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +  +  + +L     +   GLNL    N +    L W+     Q I R      
Sbjct: 921  QKILERFAKDDDLRVLIMTTGTGAFGLNLTC-ANRVFIVELQWNPSVENQAIAR-----A 974

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             + G  + V V   + + T++E +  +   K  + 
Sbjct: 975  IRFGQDQKVLVTRYVTKATVEEEMRSQQIVKKNLA 1009


>gi|154251630|ref|YP_001412454.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154253990|ref|YP_001414814.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155580|gb|ABS62797.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
 gi|154157940|gb|ABS65157.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 941

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 24/156 (15%)

Query: 51  VHDEKIKALEVII---EKANAAP---IIVAYHFNSDLARLQKAFP----------QGRTL 94
             D K ++L  +I   ++    P   ++V   F    A L                G  +
Sbjct: 458 GTDAKAESLLELIYKLQQEEGDPALKVLVFTEFVPTQAMLADYLESRGFTVATLNGGMDM 517

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    T+Q +  G   +      + G GLNLQ+  +++V F + W+    +Q I R+   
Sbjct: 518 EARTRTLQTF-AGDARV-LISTDAGGEGLNLQF-CHVIVNFDMPWNPMRIEQRIGRVD-- 572

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G K  V     + ++T++  V Q L  K  +
Sbjct: 573 ---RIGQKHVVRALNFVLEDTVEHRVRQVLEEKLAV 605


>gi|307106882|gb|EFN55126.1| hypothetical protein CHLNCDRAFT_57917 [Chlorella variabilis]
          Length = 914

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL--------------DKDPCTIQEWNEGK-I 109
            +     +V  H  + + RL  A    +                +     ++ ++    +
Sbjct: 754 DSGGPKFLVFAHHKTVMNRLAAALEGAKQYAPVNYVRIDGGTDQEDRRQAVRRFHSDSAV 813

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL+     +++VF  L       +    R    R  + G +  V VY+
Sbjct: 814 RVALLSVTAAGVGLDF-SAASVVVFAELP-----DEVAHVRQAEDRAHRQGQRHPVNVYF 867

Query: 170 LIAQNTIDELVLQRLRT 186
           L A+ T D+   Q L  
Sbjct: 868 LCAKGTADDRRWQALNR 884


>gi|188582343|ref|YP_001925788.1| helicase domain protein [Methylobacterium populi BJ001]
 gi|179345841|gb|ACB81253.1| helicase domain protein [Methylobacterium populi BJ001]
          Length = 922

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFP-QGRTLDKDP------CTIQEW 104
           +  L  +  +     I++   +   +      +++ FP QG  + +           + +
Sbjct: 504 LDGLGTLWRQNQNEKIVIFATYLGTVDMIAREIEQTFPGQGVVVLRGGDHGAKVAAERRF 563

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +    A+   G+NLQ+   IL  F L W+  + +Q I RI      + G    
Sbjct: 564 RQKDGPRVLVCTAAGREGINLQF-ARILFNFDLPWNPMDMEQRIGRI-----HRYGQSHT 617

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
             VY L+  +TI+  +   L  K
Sbjct: 618 AQVYNLVLSDTIEGRIFLLLDEK 640


>gi|261417435|ref|YP_003251118.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373891|gb|ACX76636.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326640|gb|ADL25841.1| SNF2/helicase/endonuclease domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1045

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVA---YHFNSDLARL--QKAFPQGRTLDKD------- 97
              K+ A   I+E  +A    +I+            R+  QK   +   ++ D       
Sbjct: 718 SSAKLSATMRILEDIRAKNEKVIIFTDRRDMQRMFQRILLQKFGIEASVINGDTSTSDRG 777

Query: 98  -----PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  T+  + E     ++     + G GLN+  G N ++ +S  W+  +  Q  +R+
Sbjct: 778 NKVSRQKTVDIFQEKSGFNVIIMSQLAAGVGLNV-VGANHVIHYSRHWNPAKEMQATDRV 836

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ----NTIDELVLQRLRTKSTIQDL 193
                 + G  + V+V++ +A     ++ D ++   L+ K+ +   
Sbjct: 837 -----YRIGQTKDVYVHFPMAVCDNFDSFDVVLDALLQNKTHLASA 877


>gi|39975031|ref|XP_368906.1| hypothetical protein MGG_00338 [Magnaporthe oryzae 70-15]
 gi|145018771|gb|EDK03050.1| hypothetical protein MGG_00338 [Magnaporthe oryzae 70-15]
          Length = 1151

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 95   DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    +  +NE  K  ++         GLN+    + + F +   + +   Q I R   
Sbjct: 940  ERRAQYVATFNETSKFRVMLMDLKQAAFGLNM-NSASRIYFVNPVLNPQVEAQAIGR--- 995

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+ G  + V V  L+ + T++EL+++R   K   Q+ 
Sbjct: 996  --ARRIGQSKDVTVETLVLRGTLEELIVER--KKKMTQEE 1031


>gi|322488767|emb|CBZ24014.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1577

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
           I +     +++   + S L  + +   +               ++  C  +  +     +
Sbjct: 501 IVREQREKVVIFSQYLSHLRLMGQLLAREGISAPSLTGAASDAERCRCISELQSNDACRV 560

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+ L    +  +   + W+  +  Q   R+      + G  R V +Y L 
Sbjct: 561 LLCSVRAGGVGIKLT-AASHCILLDVSWNPTDDVQATYRL-----YRYGQLRPVSIYRLA 614

Query: 172 AQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
              T + +V      +S +Q  +  ++  +++  H
Sbjct: 615 TWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|70993794|ref|XP_751744.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66849378|gb|EAL89706.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159125336|gb|EDP50453.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 1180

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 51   VHDEKIKALEV-IIEKANAAPIIVAYHFNS---------DLARLQKAFPQGRTLD---KD 97
                K+  L   ++E  +   II+ Y   +         DL  ++       TL    + 
Sbjct: 886  TTSAKLSYLLSRVMELHSEEKIIIFYDSTNSGVWIAEGLDLLGIEYRM-YASTLSPELRT 944

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                      +I +         HGL++    + + F +  W      Q I+R       
Sbjct: 945  SYLNLFRESEEIRVFLMDLHQASHGLHI-ANASRVFFVNPIWQPNVESQAIKR-----AH 998

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V+V  L+ ++T+++ +L+R   K+  +  +  A K
Sbjct: 999  RIGQTRPVYVETLVLKDTLEDKMLKR--RKAMSEKEMQEAEK 1038


>gi|323140664|ref|ZP_08075586.1| putative phage head-tail adaptor [Phascolarctobacterium sp. YIT
           12067]
 gi|322414849|gb|EFY05646.1| putative phage head-tail adaptor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1109

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 30/189 (15%)

Query: 16  QGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVHDEKIKA-LEVIIEKANAAPIIV 73
           + + I+ FNS+++  V   +L N   YY+ EK    +  +K++  L  +I+      + +
Sbjct: 776 KEDAIKIFNSSARLKVTFSELVN--TYYNNEKILIFIESKKMQRILRTVIQDFFKIKVPI 833

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNIL 132
             +       ++++             +  +NE K   +L   P + G GLN+    N +
Sbjct: 834 PIN-GDMRGEIRQSI------------VDTFNESKGFGVLLLSPLAAGMGLNI-ASANHV 879

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV------YYLIAQNTIDELVLQRLRT 186
           +  S  W+  +  Q  +R       + G  + V V      + ++  ++ D  + + L  
Sbjct: 880 IHLSRHWNPAKEDQATDR-----AYRIGQTKDVQVVIPMALHPVLRLDSFDNKLDELLEF 934

Query: 187 KSTIQDLLL 195
           K  + +  L
Sbjct: 935 KRQLSEEAL 943


>gi|308271724|emb|CBX28332.1| hypothetical protein N47_G36560 [uncultured Desulfobacterium sp.]
          Length = 645

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           KD        E  I          G G NLQ+    +V + L W+  + +Q I RI    
Sbjct: 487 KDEQIRIFQEERDI---LVTTEIGGEGRNLQF-CCQMVNYDLPWNPMKIEQRIGRI---- 538

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G  + V +Y L    +I++ +L+ L  K  + ++++  +
Sbjct: 539 -HRIGQDKQVMIYNLCNAGSIEDHILEILDRKINMFEMVIGEV 580


>gi|254450245|ref|ZP_05063682.1| helicase domain protein [Octadecabacter antarcticus 238]
 gi|198264651|gb|EDY88921.1| helicase domain protein [Octadecabacter antarcticus 238]
          Length = 937

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 35/180 (19%)

Query: 50  EVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           +  D K +AL   I      E      ++V   F    A L +                 
Sbjct: 457 QGTDAKAEALLEQIYKIQQEENDPELKVLVFTEFVPTQAMLAEFLESRGFSVTTLNGSMD 516

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           L+      + +  G + +      + G GLNLQ+  +I+V F + W+    +Q I R+  
Sbjct: 517 LEARGRAQRAF-SGNVRI-LVSTDAGGEGLNLQF-CHIIVNFDMPWNPMRVEQRIGRVD- 572

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK----------STIQDLLLNALKKETI 203
               + G    V     + ++T++  V + L  K            + D ++++++ E +
Sbjct: 573 ----RIGQPHIVRAINFVLEDTVEHRVREVLEAKLAVIAEEFGVDKVAD-VMDSVESEPL 627


>gi|321261139|ref|XP_003195289.1| DNA supercoiling [Cryptococcus gattii WM276]
 gi|317461762|gb|ADV23502.1| DNA supercoiling, putative [Cryptococcus gattii WM276]
          Length = 586

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +    + +          GLNL    N ++F    W  +   Q I+R+     
Sbjct: 476 RRLALDYFETPGVRVCLMDLKLAARGLNL-VNANRVIFLGPVWSSDIQAQAIKRV----- 529

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQR 183
            + G  R   V  L+ + T +E + +R
Sbjct: 530 HRIGQTRPTLVQILVTEGTFEEDIARR 556


>gi|169608872|ref|XP_001797855.1| hypothetical protein SNOG_07521 [Phaeosphaeria nodorum SN15]
 gi|111063867|gb|EAT84987.1| hypothetical protein SNOG_07521 [Phaeosphaeria nodorum SN15]
          Length = 220

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE-GKIPLLFAHPASCG 120
           IV   + + L      F                 K    +  +     + +L     +  
Sbjct: 40  IVFSFWKTTLDIAAHMFDTASLRYSRIHGQIPASKRSKILSSFESSNDVRILLITLGTGA 99

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLN     N +      W+     Q I RI      + G +++V +   I + T+++ V
Sbjct: 100 VGLNKLKVANHIHILEPQWNPSVESQAIGRIL-----RMGQEKSVRITRYIMKGTVEKAV 154

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
             R   K  +       +K E 
Sbjct: 155 QSRQLRKLQLASGGFGFVKDEH 176


>gi|169601474|ref|XP_001794159.1| hypothetical protein SNOG_03602 [Phaeosphaeria nodorum SN15]
 gi|111067687|gb|EAT88807.1| hypothetical protein SNOG_03602 [Phaeosphaeria nodorum SN15]
          Length = 986

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 24/141 (17%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRT------- 93
           +    ++    K++AL  I++  +  P    IV   + S L  L+     G         
Sbjct: 771 DAASLEQNTSSKVEALLDILKATSQDPSNKTIVFSQWTSFLDLLEPHLTAGGLTFTRIDG 830

Query: 94  ------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  D     ++        ++ A  A C  GLNL    N ++    WW      Q 
Sbjct: 831 SMTAPQRDTALDALES--NPNCTIMLASLAVCSVGLNL-VAANHVIMADSWWAPAIEDQA 887

Query: 148 IERIGVTRQRQAGFKRAVFVY 168
           ++R+      + G KR   V+
Sbjct: 888 VDRV-----HRLGQKRETKVF 903


>gi|326526795|dbj|BAK00786.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 949

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 53/223 (23%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y KF+R            A  +A     CL   +G   +D       + +  I +L 
Sbjct: 700 LESYEKFKR-----------SAIGTAVYMHPCL---SGMSEFDAADRAINLTNASIDSLV 745

Query: 61  VIIEKANA-----------------APIIVAYHF---NSDLARLQ---KAFPQGRTL--- 94
             I   +                    ++    +      L RL    + +  G+ +   
Sbjct: 746 ESINVTDGVKARFFTNILALANSAGEKVLAFGQYILPMKFLERLLVKTRGWNVGKEIFVI 805

Query: 95  -------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +++  T Q  N     +LF    +CG G++L  G + +V   +  +    +Q 
Sbjct: 806 NGDTSQEERELATDQFNNSADAKVLFGSIRACGEGISL-VGASRVVILDVHLNPSVTRQA 864

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           I R       + G ++ VFVY L+A ++ +E   Q    K  I
Sbjct: 865 IGR-----AFRPGQQKKVFVYRLVAADSQEESFHQTAFKKEVI 902


>gi|302896484|ref|XP_003047122.1| hypothetical protein NECHADRAFT_122747 [Nectria haematococca mpVI
           77-13-4]
 gi|256728050|gb|EEU41409.1| hypothetical protein NECHADRAFT_122747 [Nectria haematococca mpVI
           77-13-4]
          Length = 834

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 53  DEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
             K++A+ E +         I+   +   L  L K   + +           + K    +
Sbjct: 668 STKMRAIIEDVRVDLGTTKSIIFSCWTRTLHLLSKHLEEAKIPFHQIDGDCPIPKRQAKL 727

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             ++    + +L     +   GLNL    N +    L W+     Q I R       + G
Sbjct: 728 DAFDKNDDVQVLIMTTGTGAFGLNLTC-ANRIFIAELQWNPSVENQAIAR-----AIRLG 781

Query: 161 FKRAVFVYYLIAQNTID--ELVLQRLRTKSTIQ 191
            +  V V   I ++T++  + ++ + R K  + 
Sbjct: 782 QENEVRVTRYIIKDTVEVMQEMMAQQRHKKNLA 814


>gi|34533780|dbj|BAC86802.1| unnamed protein product [Homo sapiens]
          Length = 1225

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 20/133 (15%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGR 92
            +         K+  L+ +++K       +++       L  L+          +    G 
Sbjct: 1015 DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1074

Query: 93   TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T       I  +N    +         + G G+NL    + ++ +   W+     Q    
Sbjct: 1075 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQA--- 1130

Query: 151  IGVTRQRQAGFKR 163
               +R  + G  +
Sbjct: 1131 --FSRAHRIGQTK 1141


>gi|242762226|ref|XP_002340333.1| chromodomain-helicase-DNA-binding protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218723529|gb|EED22946.1| chromodomain-helicase-DNA-binding protein, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 203

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 35/159 (22%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW----------NE 106
             ++   E+      ++   F +  A +     +   L      IQ +          N 
Sbjct: 11  DVIQEWFEEGPDTKFMIFAQFRTMTA-IFANMCKREDLAYAMGYIQNFSYFTLQIHKINR 69

Query: 107 G---------------KIPL---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G               KIP+   + A   + G GL++    N  +    WW+    Q   
Sbjct: 70  GLGLLQPYPNPSRFPKKIPISKIMIAALKAGGTGLDIT-AANKCILVEPWWNYAVQQ--- 125

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +      + G  RAV +  L+A N +D+ +++  + K
Sbjct: 126 --LAFCLLFRIGQTRAVEIVKLVASNAVDDHMMELQKLK 162


>gi|255954693|ref|XP_002568099.1| Pc21g10670 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589810|emb|CAP95964.1| Pc21g10670 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1167

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 26/175 (14%)

Query: 42   YDEEKHWKE-----VHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
             D+ + W       +   K  A+   +    E+ + A I++   + +    L+    +  
Sbjct: 945  IDKGQDWIAAFGRCMPGSKFDAITSQVKKWFEEDSTAKIVIFTQYVNSARLLRYLCEENH 1004

Query: 91   -------GRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   GR  ++     +  +    +  ++ A   + G GL+     N  +   LWW+ 
Sbjct: 1005 WSYSEITGRMANRSREIHLDRFRTNDEYKIMIASIKTGGLGLDFSV-ANKCILVDLWWNE 1063

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q   R+      + G +R V    L+ + +ID+ +    + K+     +++
Sbjct: 1064 AVQDQAFFRLW-----RLGQQRDVECIMLMIKRSIDDWMDSTQKRKAKDISEVMS 1113


>gi|148667867|gb|EDL00284.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1, isoform CRA_a [Mus
           musculus]
          Length = 922

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-- 93
            +  +      ++ +  +++       +V  H    L  + K             G T  
Sbjct: 673 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPS 731

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D++    +        +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 732 ADREAQCQRFQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 788

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 789 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 819


>gi|20809351|gb|AAH29078.1| Smarcal1 protein [Mus musculus]
          Length = 910

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-- 93
            +  +      ++ +  +++       +V  H    L  + K             G T  
Sbjct: 661 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPS 719

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D++    +        +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 720 ADREAQCQRFQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 776

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 777 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 807


>gi|74150596|dbj|BAE32320.1| unnamed protein product [Mus musculus]
          Length = 910

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-- 93
            +  +      ++ +  +++       +V  H    L  + K             G T  
Sbjct: 661 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPS 719

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D++    +        +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 720 ADREAQCQRFQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 776

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 777 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 807


>gi|229577278|ref|NP_061287.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Mus musculus]
 gi|60390942|sp|Q8BJL0|SMAL1_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; Short=mharp;
           AltName: Full=Sucrose nonfermenting protein 2-like 1
 gi|26350593|dbj|BAC38933.1| unnamed protein product [Mus musculus]
 gi|148667869|gb|EDL00286.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1, isoform CRA_c [Mus
           musculus]
          Length = 910

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-- 93
            +  +      ++ +  +++       +V  H    L  + K             G T  
Sbjct: 661 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPS 719

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D++    +        +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 720 ADREAQCQRFQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 776

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 777 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 807


>gi|66812496|ref|XP_640427.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
 gi|60468391|gb|EAL66396.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
          Length = 1540

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 58   ALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWN------EGKIP 110
                +IE++    +I        D  R+    P    + K    I  +        G   
Sbjct: 1344 MFLDLIEES----LIANDWIKDVDFCRIDGKLP----ISKREAIIDSFQAKSNNGNGGPR 1395

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L+       G GLNL+   NI+      W     +Q I R+      + G  R +FV   
Sbjct: 1396 LMLMSITCGGIGLNLER-ANIVYLMEPSWTPSIEEQAIGRVD-----RIGQTRDIFVKRF 1449

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I + TI+  +L+    K    +  L
Sbjct: 1450 IIKKTIEVGMLKLHDAKKNNSNAFL 1474


>gi|115377394|ref|ZP_01464599.1| type III restriction enzyme, res subunit family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365605|gb|EAU64635.1| type III restriction enzyme, res subunit family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1102

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 53  DEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
           D K+ A    L  I  +   A ++V       L  LQ    +             L +  
Sbjct: 582 DAKLNAFLGVLRGIWAQEREAKVLVFTESRDTLEALQAELGREGIEALGYHGDLPLVERD 641

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  + + + P +       G G N Q+  + LV + L W     +Q I R+      +
Sbjct: 642 RQVARFRDPEGPQVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQRIGRLD-----R 695

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRL 184
            G  + V ++      T+   VL  L
Sbjct: 696 IGQSKPVEIHVFDPAGTLASDVLMLL 721


>gi|328700856|ref|XP_003241405.1| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon
           pisum]
          Length = 1155

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  L       + +N  +    +      +   G N+  G N ++  S  W+    
Sbjct: 786 RMDGKTPLSIRNQMCEAFNNPENTAKVFLLSMGTGVLGYNM-VGANRVLLLSTSWNPSND 844

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Q I R       + G ++ V+V  L+A+ T++     R  +K  +   +++
Sbjct: 845 LQAIYRCL-----RFGQQKTVYVNRLLAKGTVEPKAYYRQISKLGMASSVVD 891


>gi|147858107|emb|CAN81392.1| hypothetical protein VITISV_043256 [Vitis vinifera]
          Length = 210

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+     Q + R       + G    V +Y LI + TI+E ++Q  + K  ++ L++
Sbjct: 51  GSDWNPHADLQAMAR-----AHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVV 105

Query: 196 NALKKETI 203
             LK + I
Sbjct: 106 GRLKAQNI 113


>gi|221505782|gb|EEE31427.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1345

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFF--SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +      + G+GL L +  ++ VF       + +  +Q I R+      + G  + V V 
Sbjct: 548 VFLVSVRAGGYGLTLSHCASVCVFLEGGGDGNPQVERQAIARL-----YRQGQTKKVKVI 602

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LI ++T++E++  R R K  +   +L+
Sbjct: 603 RLITRSTVEEVMYWRGRQKLKLVADVLS 630


>gi|302916821|ref|XP_003052221.1| hypothetical protein NECHADRAFT_106052 [Nectria haematococca mpVI
           77-13-4]
 gi|256733160|gb|EEU46508.1| hypothetical protein NECHADRAFT_106052 [Nectria haematococca mpVI
           77-13-4]
          Length = 759

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I+E+N     + +L     + G GLNL  GG  ++    WW     +Q+I R  
Sbjct: 631 ERRTEVIREFNRQNSLMRVLLLSAVAGGTGLNL-AGGCHVILCEPWWTPGLVEQVIGR-- 687

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLL 195
                +   ++ V VY + A  ++ID L+ ++L  K    D  +
Sbjct: 688 ---ANRMPQQKQVQVYKVTAAMSSIDTLIQEKLAKKQEFIDQTV 728


>gi|257052989|ref|YP_003130822.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691752|gb|ACV12089.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 971

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 18/138 (13%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKI 109
           ++E+     +++   +   L  L                      ++      E+N G+ 
Sbjct: 478 LLEEQPDEKLLLFTEYRDTLDYLLDFVQDEPWAEEILVIHGDVDKEERARIEDEFNHGQS 537

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            LLFA  A+   G++LQ+  +I+  + L W+    +Q I RI      + G  R V V+ 
Sbjct: 538 RLLFATDAAS-EGIDLQHSCHIMANYELPWNPNRLEQRIGRI-----HRYGQDREVKVWN 591

Query: 170 LIAQNTIDELVLQRLRTK 187
            +  +T +  + + L+TK
Sbjct: 592 FLFDDTRESEIFEMLQTK 609


>gi|126326253|ref|XP_001370015.1| PREDICTED: similar to zinc finger, RAN-binding domain containing 3,
           [Monodelphis domestica]
          Length = 959

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
             +V  H  S L    +A  + +             ++     Q   +    +      +
Sbjct: 91  KFLVFAHHLSMLQACTEAAIESKVRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQA 150

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GL      + ++F  L+WD    +Q  +R       + G   +V ++YLIA  T+D 
Sbjct: 151 AGQGLTFTAATH-VIFAELYWDPGHIKQAEDR-----AHRIGQSSSVNIHYLIANGTLDS 204

Query: 179 LVLQRLRT 186
           L+   L  
Sbjct: 205 LMWGMLNR 212


>gi|308498668|ref|XP_003111520.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
 gi|308239429|gb|EFO83381.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
          Length = 679

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 58  ALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-- 101
             E I+E      A    +++  H    L  +Q    +         G+T       +  
Sbjct: 470 VCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHQRTALCD 529

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+  I +      + G G+ L    +++VF  + ++     Q  +R       + G 
Sbjct: 530 SFQNDDSIRVAVLSITAAGVGITLT-AASVVVFAEIHFNPGYLVQAEDR-----AHRVGQ 583

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 584 KDSVFVQYLIAKKTADDVMWNMVQQKLDV 612


>gi|325089926|gb|EGC43236.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 1211

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLDK--D 97
                  K+  L   +IE      II+ Y  N+    + +              TL     
Sbjct: 911  VATASAKLTYLLDKVIEFQEKEKIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTR 970

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +NE + + +L        HGL++    + +   +  WD     Q I+R      
Sbjct: 971  SEYLSLFNETETVRVLLMDLRQAAHGLHI-ACASRVFIVNPIWDPNFESQAIKR-----A 1024

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +    + V+V  L+ + T+++ +L+R   K      L +A K
Sbjct: 1025 HRISQNKPVYVETLVLKGTLEDRMLRR--RKQMSNAELRHAEK 1065


>gi|74005708|ref|XP_536062.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a-like 1 [Canis
           familiaris]
          Length = 961

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-QEWN 105
           I+ +  ++E       +V  H    L+ + +   +         G T   D   + Q++ 
Sbjct: 721 IEYILDLLES-GREKFLVFAHHKVVLSAVTRELEKKHVPHIHIDGSTSSADREDLCQQFQ 779

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K  +      +   GL      +++VF  L+W+     Q  +R+      + G   +
Sbjct: 780 LFEKHAVAVLSITAANMGLTFT-SADLVVFAELFWNPGVLLQAEDRV-----HRIGQSSS 833

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 834 VSIHYLVAKGTADDYLWPLIQEK 856


>gi|255938726|ref|XP_002560133.1| Pc14g01390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584754|emb|CAP74280.1| Pc14g01390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1487

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 23/161 (14%)

Query: 39   AVYYD-EEKHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFNSDLARLQ 85
            A+Y D    H  E+ +         KI  L   I    E    A  I+   + S L+ LQ
Sbjct: 1226 AIYSDISSGHLNEIKNIDLEESYGSKIDTLVRHILWLREHDPGAKSIIFSQYGSFLSSLQ 1285

Query: 86   KAF---PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
              F       T    P  I+++  +  I     H  +   GLNL    + +       + 
Sbjct: 1286 AVFGVLEISSTTIDSPDGIEKFKSDPAIECFLLHGKAQASGLNLTVATH-VFLCEPLINT 1344

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                Q+I R+      + G  R   V+  +   T++E + +
Sbjct: 1345 AIELQVIARV-----HRIGQHRPTTVWMYLVSGTVEESIYE 1380


>gi|312110246|ref|YP_003988562.1| SNF2-related protein [Geobacillus sp. Y4.1MC1]
 gi|311215347|gb|ADP73951.1| SNF2-related protein [Geobacillus sp. Y4.1MC1]
          Length = 555

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K +    +I+      +I+   + +    LQ    Q             
Sbjct: 344 MEKINVVSTNSKAEKALQLIQSIQEK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFK 402

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++   F    + G G+NLQ+    ++ + L W+    +Q I R+ 
Sbjct: 403 HGKKDWMKELFKNHAQV---FIATEAGGEGINLQF-CRHVINYDLPWNPMRLEQRIGRV- 457

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G    V++Y    +NT++E +L  L  K  + + ++
Sbjct: 458 ----HRLGQTSDVYIYNFAVKNTVEEHILTLLYEKIRLFERVV 496


>gi|219118546|ref|XP_002180043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408300|gb|EEC48234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 140

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYY 169
           ++     + G GLNL    ++ +    WW+  +  Q + RI      + G    V  V  
Sbjct: 66  VMLMSMGAGGEGLNLVAASSVFI-ADPWWNAAKEDQCVNRI-----HRIGQLSPVVRVRK 119

Query: 170 LIAQNTIDELVLQRLRTKS 188
            +  ++++E +++    K 
Sbjct: 120 FVVTDSVEERIVELQSRKK 138


>gi|302906966|ref|XP_003049543.1| hypothetical protein NECHADRAFT_74036 [Nectria haematococca mpVI
            77-13-4]
 gi|256730479|gb|EEU43830.1| hypothetical protein NECHADRAFT_74036 [Nectria haematococca mpVI
            77-13-4]
          Length = 1043

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 80   DLARLQK-AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG--------------- 122
            D AR++   F       +    I+ +  +  + +     +    G               
Sbjct: 892  DQARIRYVRFDGNVPQKQRSSVIETFKKDPSVTVFLLTLSCGAVGWAFVPCIKRHPTNVC 951

Query: 123  ---LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
               L L    +        W+    +Q + R+      + G +R V       ++T +E 
Sbjct: 952  PHRLTLTE-ASRAFLIEPHWNPTLEEQALARV-----HRLGQQREVTTVRFFVKDTFEER 1005

Query: 180  VLQRLRTKSTIQDLLL 195
            VL   ++K  ++++LL
Sbjct: 1006 VLDVQKSKKKLEEVLL 1021


>gi|195015254|ref|XP_001984167.1| GH15153 [Drosophila grimshawi]
 gi|193897649|gb|EDV96515.1| GH15153 [Drosophila grimshawi]
          Length = 1285

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKIKALE 60
             K +++L               SK   C Q +    YY                KI  + 
Sbjct: 1077 EKMKKQL----------GREGTSKCPMCRQYSPQLYYYVRKGANSSTVIGDFSTKIAYIV 1126

Query: 61   VI---IEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPL-- 111
             +   I+  N    +++   + + L  +  A        +       I E+ +  + +  
Sbjct: 1127 ELVLKIKSGNDQEKVLIFSQWATILNYVAIALRHNGIEHRSKFTNRDIDEFKDSALNVTC 1186

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L    A    GLNL    + +          E  Q I R+      + G  +   V+  I
Sbjct: 1187 LLLPLARGAKGLNLIEATH-VFLIEPILTPGEELQAIGRV-----HRFGQTKPTTVHRFI 1240

Query: 172  AQNTIDELVLQRLRTKST 189
               TI+E +++ +++   
Sbjct: 1241 VNGTIEENIMKLIKSADD 1258


>gi|115474249|ref|NP_001060723.1| Os07g0692600 [Oryza sativa Japonica Group]
 gi|113612259|dbj|BAF22637.1| Os07g0692600 [Oryza sativa Japonica Group]
          Length = 475

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG---------------RTLDK 96
            K K +  ++ K++     +++  H  S +  L K                    + L  
Sbjct: 280 CKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPV 339

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + ++N    GK  +L A   +C  G++L  G + LV     W+  + +Q I R   
Sbjct: 340 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKTRQAIAR--- 395

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 396 --AFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 435


>gi|11499927|ref|NP_071172.1| ATP-dependent RNA helicase HepA, putative [Archaeoglobus fulgidus
           DSM 4304]
 gi|2650747|gb|AAB91314.1| ATP-dependent RNA helicase HepA, putative [Archaeoglobus fulgidus
           DSM 4304]
          Length = 943

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 64/161 (39%), Gaps = 24/161 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------------ 90
           EK  +   D+K + L  ++ +       +I+   F + L  L++ F +            
Sbjct: 373 EKLLERGRDKKTERLVQVVNEHMEKGNKVIIFTQFLATLDHLERTFKEIYGENSVVTVHG 432

Query: 91  -GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +K     + W+  KI        + G  LNLQ   N+++ + + W+   + Q + 
Sbjct: 433 GLTHEEKKNRIAKLWDSAKI---LIATDAAGESLNLQ-AANVVIHYEIPWNPVVYIQRVG 488

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           R+      + G ++ +++  ++    I+  VL+ +  K   
Sbjct: 489 RV-----YRYGQEKDIYIQSMLPVFKIERRVLEVILQKVET 524


>gi|25011394|ref|NP_735789.1| hypothetical protein gbs1352 [Streptococcus agalactiae NEM316]
 gi|24412932|emb|CAD47011.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 2066

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   
Sbjct: 1696 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQARMKAVHHLDVPWRPSDIQQRNG 1755

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  +      K
Sbjct: 1756 RLI----RQGNQHQNVEIYHYITKGSFDNYLWATQENK 1789


>gi|240254615|ref|NP_181609.4| ATP binding / DNA binding / helicase/ nucleic acid binding / protein
            binding / zinc ion binding [Arabidopsis thaliana]
 gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing
            protein [Arabidopsis thaliana]
          Length = 1664

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 69   APIIVAYHFNSDLARLQKAFP----------------------QGRTLDKDPCTIQEWNE 106
              ++V   +N  L  L+ AF                       +G   +       +  E
Sbjct: 1450 TKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEE 1509

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +L        +GLNL    + ++      +     Q + R+      + G ++   
Sbjct: 1510 KSIQVLLLLVQHGANGLNLLEAQH-VILVEPLLNPAAEAQAVGRV-----HRIGQEKPTL 1563

Query: 167  VYYLIAQNTIDELVLQRLRTKST 189
            V+  +   T++E + +  R K+T
Sbjct: 1564 VHRFLVSGTVEESIYKLNRNKNT 1586


>gi|154339395|ref|XP_001562389.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062972|emb|CAM39420.1| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1878

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQE 103
              ++ +E I        ++V   + + L     A               +L +    ++ 
Sbjct: 1681 AFLEVVEEIWRTQPDDGVLVFSKYPAFLQLAYDAVAARGYAPHMVCGASSLAQRQRAMRA 1740

Query: 104  WNEG-------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       +  +LF    S   GLNL +  N +VF     +     Q + R+     
Sbjct: 1741 MQSSSGDSALSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPAIEHQAVGRV----- 1794

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             + G  + V V+++ A +TI+E++ +R
Sbjct: 1795 HRFGQLKQVIVHHIFAPHTIEEVIYRR 1821


>gi|237838391|ref|XP_002368493.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211966157|gb|EEB01353.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
           ME49]
          Length = 1345

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFF--SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +      + G+GL L +  ++ VF       + +  +Q I R+      + G  + V V 
Sbjct: 548 VFLVSVRAGGYGLTLSHCASVCVFLEGGGDGNPQVERQAIARL-----YRQGQTKKVKVI 602

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LI ++T++E++  R R K  +   +L+
Sbjct: 603 RLITRSTVEEVLYWRGRQKLKLVADVLS 630


>gi|134080265|emb|CAK97168.1| unnamed protein product [Aspergillus niger]
          Length = 2138

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAY-------HFNSDLARLQKA 87
            G V  DE   +      K+  L  I+        A I + Y           DLA++ K 
Sbjct: 1946 GGVSVDESAKY---GGSKLDKLIEILNGIPSNERALIFIQYPELIEVASKALDLAKI-KH 2001

Query: 88   FPQGRTLDKDPCTIQEWNE---GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEE 143
                 T  K    I+++ +   G+   L  +       GLNLQ   N ++F S      +
Sbjct: 2002 TAILTTDRKSMQKIEQFQQTSFGEDKALILNLGGEMAAGLNLQ-SANHVIFLSPMNAETQ 2060

Query: 144  HQQMIERI-GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            +      I  + R R+ G  R V VY+L+A+++ID  + Q  R 
Sbjct: 2061 YDYESAMIQAIGRSRRYGQTRRVHVYHLLAKHSIDVNIFQERRH 2104


>gi|222481173|ref|YP_002567409.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454549|gb|ACM58812.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 988

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA----FPQGRTL-----DKDP 98
            D K + L+  I++         I++   +   L  L+          +       D+  
Sbjct: 472 TDSKAQLLKQFIDRILSNDPDEKILIFTEYTDTLEYLRDRVFDDHDIAQVYGDLDQDRRR 531

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++++   +  L+ A   +   GLNLQ+  +I+V + L W+     Q + R+      +
Sbjct: 532 EEMEKFEN-EANLMLA-TDAAQEGLNLQF-AHIMVNYDLPWNPIRIDQRMGRL-----HR 583

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            G +R V +  L  +NT +  +L  L  K+ 
Sbjct: 584 YGQERTVEIRNLFFKNTRESEILNLLVEKTN 614


>gi|209543188|ref|YP_002275417.1| helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530865|gb|ACI50802.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1160

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 26/166 (15%)

Query: 53  DEKIKALEVIIEK--------ANAAPIIVAYHFNSDLARLQKAFP-------------QG 91
           D K + LE I++              I++       L  L+                  G
Sbjct: 476 DTKWRQLEAILDDPIMVDSHTGARRKILIFTEPKDTLEYLRDRIAARTGEPDSVVVIHGG 535

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T +     +  +N      +     + G G+NLQ G +++V + L W+    +Q   RI
Sbjct: 536 ITREARRAAVAAFNSDPAVRVMIANDAAGEGVNLQRGAHLMVNYDLPWNPNRIEQRFGRI 595

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G      ++ L A NT +  V QRL  K       L  
Sbjct: 596 -----HRIGQTEICHLWNLCAVNTREGEVYQRLLDKLEEARAALGG 636


>gi|115402311|ref|XP_001217232.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189078|gb|EAU30778.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 752

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query: 72  IVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           IV   +   L  L     +              LD+            IP+L     +  
Sbjct: 640 IVFSAWTKTLDILCMKLEELGLNHVRIDGDVSRLDRTRRLHDFQTSPSIPILLMTYGTGA 699

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GLNL    N +      W+    +Q I R       + G  R V V   +A+ T++E
Sbjct: 700 VGLNLT-AANRIHILEPQWNPSVEEQAIGR-----AVRLGQSREVTVVKYVAERTVEE 751


>gi|194336225|ref|YP_002018019.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308702|gb|ACF43402.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1169

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 30/219 (13%)

Query: 5   HKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
              +  L          A             Q A G V   +++ W E+   +I   E  
Sbjct: 434 ETMEETLVVQATASQTIAELDGEIFILQALEQQAKGLVASGKDRKWDELS--RILQNEPQ 491

Query: 63  IEKANAA--PIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWN-E 106
           +  A      II+       L  L +                     D    + + +  +
Sbjct: 492 MRDAGGRMRKIIIFSEHRDTLNYLHEKIAGVLGSHDAIVVIHGAVHRDDRRKSQELFRSD 551

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I +L A   + G G+NLQ   N++V + L W+    +Q   RI      + G +    
Sbjct: 552 PEIRVLVA-TDAAGEGINLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQQEVCH 604

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           ++ L+A+ T +  V  RL  K  +      ALK E  +V
Sbjct: 605 LWNLVAKETREGDVYFRLLEKLQVVS---EALKGEVFNV 640


>gi|312219860|emb|CBX99802.1| hypothetical protein [Leptosphaeria maculans]
          Length = 994

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 33/153 (21%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCG 120
           IV   +   L  ++ A  Q +              + P   +  +   + ++        
Sbjct: 821 IVFSTWRMTLDIIEAALEQAQIRSVRFDGKVAQTQRQPVLNEFKSNPNVRIILLTLECGA 880

Query: 121 HG----------------LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            G                L L    +        W+    +Q + RI      + G KR 
Sbjct: 881 VGSVGPPASIKNANCIIRLTLT-AASRAYLMEPHWNPTVEEQALARI-----HRIGQKRE 934

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V       +++ +E V++    K  +  +LL+ 
Sbjct: 935 VTTIRFYIRDSFEERVIETQEAKKNLASVLLSG 967


>gi|157118619|ref|XP_001659181.1| snf2 histone linker phd ring helicase [Aedes aegypti]
 gi|108883243|gb|EAT47468.1| snf2 histone linker phd ring helicase [Aedes aegypti]
          Length = 1114

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 42   YDEEKHWKEVHDEKI-KALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTLDKD 97
             +E    +     KI K +E I++  +  P   II+  H++  L  L +A  Q     + 
Sbjct: 935  SEEAITVRGNFSSKIVKIVETILQLKHQEPQVKIIIFSHWDPILTMLARALDQNDITYRA 994

Query: 98   PCT-----IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     ++E+ +   ++  +         GLNL    + +       +  E  Q + R
Sbjct: 995  KTSKFYKGVEEFKDYSKELTCMLLPLKYGSKGLNLTEATH-VFLVEPILNPGEELQAVGR 1053

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +      + G  +  FV+  I Q TI+E + + ++     Q  L ++ +    H+
Sbjct: 1054 V-----HRIGQTKPTFVHRFIVQQTIEETIHRTIQN---DQSGLWSSKQVTVRHL 1100


>gi|322500668|emb|CBZ35745.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1581

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
           I +     +++   + S L  + +   +               ++  C  +  +     +
Sbjct: 501 IVREQREKVVIFSQYLSHLRLMGQLLAREGISAPSLTGAASDAERCRCISELQSNDTCRV 560

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+ L    +  +   + W+  +  Q   R+      + G  R V +Y L 
Sbjct: 561 LLCSVRAGGVGIKLT-AASHCILLDVSWNPTDDVQATYRL-----YRYGQLRPVNIYRLA 614

Query: 172 AQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
              T + +V      +S +Q  +  ++  +++  H
Sbjct: 615 TWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|147865787|emb|CAN81153.1| hypothetical protein VITISV_020819 [Vitis vinifera]
          Length = 845

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L     + G GL L    + ++F  L W   +  Q  +R+      + G   +V ++Y
Sbjct: 718 QFLVLSIKAGGVGLTLT-AASTVIFAELSWTPGDLIQAEDRV-----HRIGQVSSVNIHY 771

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           L+A +T+D+++   +++K      +L+ 
Sbjct: 772 LLANDTVDDIIWDVVQSKLENLGQMLDG 799


>gi|195114874|ref|XP_002001992.1| GI17136 [Drosophila mojavensis]
 gi|193912567|gb|EDW11434.1| GI17136 [Drosophila mojavensis]
          Length = 733

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 33/206 (16%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKA- 58
           ++     +    +   N A+K+  C +L N  +   + K  +E+         + K KA 
Sbjct: 453 EKNRETVVLDPALVWTNDAAKSS-CTELNNE-LQKAKGKSREELLLRFYARTAEVKTKAV 510

Query: 59  ---LEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWNEGKIPLL- 112
              L+ +I++      I+  H    +  +  A    +   +  D  T  +   G +    
Sbjct: 511 CAYLKTLIKE--KLKFIIFAHHRIMMDAICDALRSLKVSFIRIDGQTRSDVRAGYVDTFQ 568

Query: 113 --------FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                        +C  G+ L     I+VF  L W+     Q       +R  + G  + 
Sbjct: 569 KSSSCRAAVLSLKACNSGITLT-AAEIIVFAELDWNPSTLAQA-----ESRAHRIGQTKP 622

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI 190
           V   YL+A  T D+ +   L+ K  +
Sbjct: 623 VVCRYLMANQTADDTIWNMLKNKQEV 648


>gi|28867259|ref|NP_789878.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850493|gb|AAO53573.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 801

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 44  EEKHWKEVHDEKIKALEV-----IIEKANAAPIIVAYHFNSDLARLQKAF------PQGR 92
           +E    + +D K+K         I        +++   + +    L+ A        Q  
Sbjct: 361 DEAAALKANDLKLKRFIDEIIGKIHTANPDEKVLIFTEYRTTQNYLRDALANHYGSDQVD 420

Query: 93  TLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            ++      +    I+ +   +         + G G+NLQ   +++V + L W+     Q
Sbjct: 421 LINGSMQHAERREAIKRFE--EQGRFLISTEAGGEGINLQSKCHVMVNYDLPWNPMRLVQ 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK---------STIQDLLLNA 197
            I R+      + G K+ V V+ +   +++D+ ++  +  +            Q    + 
Sbjct: 479 RIGRL-----YRYGQKKKVVVFNIQQADSLDQNIVDLMYERIDSVVNDLAEVQQHEFNDG 533

Query: 198 LKKETIH 204
           LK E + 
Sbjct: 534 LKDEILG 540


>gi|73748049|ref|YP_307288.1| helicase [Dehalococcoides sp. CBDB1]
 gi|73659765|emb|CAI82372.1| putative helicase (Snf2 family) [Dehalococcoides sp. CBDB1]
          Length = 1033

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 24/158 (15%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFP---------QG 91
           E+ +  E  D K++AL+ +I          I++   F   LA + K             G
Sbjct: 508 EKANSLETFDPKLEALKKVIRDKLTLPNNKIMLFSSFRHTLAYIYKNLIAEGYRVGLVHG 567

Query: 92  RTLDKDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            T D++   I++       +E  I +L         GL+ Q+  + ++ + L W+    +
Sbjct: 568 GTPDEERENIRDRFQLTGQDEKVIDVLLFS-EIGCEGLDYQF-CDCMINYDLPWNPMRIE 625

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q I RI    Q+       V ++ ++   TID  + +R
Sbjct: 626 QRIGRIDRNGQK----SETVAIFNMVTPGTIDAEIYER 659


>gi|325972430|ref|YP_004248621.1| SNF2-related protein [Spirochaeta sp. Buddy]
 gi|324027668|gb|ADY14427.1| SNF2-related protein [Spirochaeta sp. Buddy]
          Length = 663

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ +  +I         +IV   F   +  L+    +          G+T +     
Sbjct: 487 STKLRTVLNLISDLVKQGNKVIVWTIFVQTMQDLRNLIQKELGLSVELLNGQTKNFRAEI 546

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+E+     +P++ A+P++    ++L    +  ++  + ++   + Q  +RI      + 
Sbjct: 547 IEEFKHSDALPVVIANPSAVSESISLHTCCHHAIYLDMSYNAVHYIQSKDRI-----HRL 601

Query: 160 GFKRAV--FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G    +  F YY+ A NTIDE V  R+  K    +  + 
Sbjct: 602 GLSPEIKTFYYYIQANNTIDERVYSRVIMKEVRMNQAIE 640


>gi|295669226|ref|XP_002795161.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285095|gb|EEH40661.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1282

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ--KAFPQGRTLDK-- 96
                  K+  L   ++E      II+ Y        + ++   +   +      TL    
Sbjct: 920  VATASAKLTYLLDKVLEFQEKEKIIIFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSD 979

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N  + + +L        HGL++     + +  +  WD     Q I+R     
Sbjct: 980  RSAYLALFNTTELVRVLLMDLRQASHGLDIPCASRVFI-VNPIWDPNVESQAIKR----- 1033

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +    + V+V  L+ +NT+++ +L   R K      L +A K
Sbjct: 1034 AHRISQGKPVYVETLVLKNTLEDKML--QRRKQMSDAELRHAEK 1075


>gi|240169371|ref|ZP_04748030.1| SNF2 family helicase [Mycobacterium kansasii ATCC 12478]
          Length = 2150

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 71  IIVAYHFNSD----LARLQKAFPQGRTLD------KDPCTIQEWNEGKIPLLFAHPASCG 120
           ++V           L R++      R         +   TI  +  G+ P++     +  
Sbjct: 514 VLVFTQHTDTVTGLLRRMEAEGLTARAFHGSMSASERAATIAAFRSGEAPVM-ISTDAGA 572

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G NLQ+  N ++ + L W+    +Q I R+    Q +      VFV  L A  TIDE V
Sbjct: 573 EGQNLQF-CNCVLNYDLPWNPMRIEQRIGRVDRLTQPR----DEVFVANLYACRTIDESV 627

Query: 181 LQRLRTKSTIQDLLLNAL 198
            + L  K  + +LL   +
Sbjct: 628 YRLLAEKLRMFELLFGQV 645


>gi|302908977|ref|XP_003049971.1| hypothetical protein NECHADRAFT_106359 [Nectria haematococca mpVI
            77-13-4]
 gi|256730908|gb|EEU44258.1| hypothetical protein NECHADRAFT_106359 [Nectria haematococca mpVI
            77-13-4]
          Length = 1287

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 33/185 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y +F  +   ++Q   ++  +  +K                           +K L  +
Sbjct: 1026 IYSEFNADQLAEIQNIELDGASFTTKVDTL-----------------------VKHLLWL 1062

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPAS 118
             E    A  I+   +   LA L+ AF + R     +D      +   +  +     H  +
Sbjct: 1063 RESDPGAKSIIFSQYKGFLAILRNAFSRSRIGFTSIDDANGITRFKEDPSVECFLLHARA 1122

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLNL    + +       +     Q I R+      + G +    V+  +   T++E
Sbjct: 1123 HSSGLNLVNASH-VFLCEPLLNTALELQAIARVD-----RIGQQHETTVWLYLVTGTVEE 1176

Query: 179  LVLQR 183
             +   
Sbjct: 1177 SIYNL 1181


>gi|304320770|ref|YP_003854413.1| putative ATP-dependent RNA helicase [Parvularcula bermudensis
           HTCC2503]
 gi|303299672|gb|ADM09271.1| possible ATP-dependent RNA helicase [Parvularcula bermudensis
           HTCC2503]
          Length = 1173

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 16  QGENIEAFNSASKTVKCLQL-ANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIV 73
             E+IE      +T+K L+L A   +   ++  W ++   KI   E++I+       +I+
Sbjct: 461 SAESIEQLEIEVETLKSLELQALNVLKSGKDTKWTQLD--KILDDELMIDGDGVRRKLII 518

Query: 74  AYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
                  L  L                   G + ++    I  + + +  ++     + G
Sbjct: 519 FTEAKDTLQYLADKIIGRLGKADAVDVIHGGVSREERRKVISRFMQDRELMVLVANDAAG 578

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NLQ G +++V + L W+  + +Q   RI      + G      ++ L+A NT +  V
Sbjct: 579 EGVNLQRG-HLMVNYDLPWNPNKIEQRFGRI-----HRIGQTEVCHLWNLVAANTREGQV 632

Query: 181 LQRLRTKSTIQDLLLNA 197
             RL  K       L  
Sbjct: 633 YGRLLEKLETARSALKG 649


>gi|154341643|ref|XP_001566773.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064098|emb|CAM40292.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1235

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G G+NLQ   +++V     +      Q + R+      + G +  V   YL
Sbjct: 816 FFLISIKAGGCGINLQ-AAHMVVLVDRDYTATNEDQALARV-----YRIGQRHTVRAVYL 869

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
              +  +E V QR  TK+  ++ ++N
Sbjct: 870 ATTDPSEERVAQRAATKNKPREAIIN 895


>gi|146092861|ref|XP_001466542.1| hypothetical protein [Leishmania infantum]
 gi|134070905|emb|CAM69581.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1581

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPL 111
           I +     +++   + S L  + +   +               ++  C  +  +     +
Sbjct: 501 IVREQREKVVIFSQYLSHLRLMGQLLAREGISAPSLTGAASDAERCRCISELQSNDACRV 560

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+ L    +  +   + W+  +  Q   R+      + G  R V +Y L 
Sbjct: 561 LLCSVRAGGVGIKLT-AASHCILLDVSWNPTDDVQATYRL-----YRYGQLRPVNIYRLA 614

Query: 172 AQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
              T + +V      +S +Q  +  ++  +++  H
Sbjct: 615 TWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|171742817|ref|ZP_02918624.1| hypothetical protein BIFDEN_01932 [Bifidobacterium dentium ATCC
           27678]
 gi|283456138|ref|YP_003360702.1| ATP-dependent DNA helicase recQ [Bifidobacterium dentium Bd1]
 gi|171278431|gb|EDT46092.1| hypothetical protein BIFDEN_01932 [Bifidobacterium dentium ATCC
           27678]
 gi|283102772|gb|ADB09878.1| ATP-dependent DNA helicase recQ [Bifidobacterium dentium Bd1]
          Length = 1185

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            N  +   + +  A+       +  W ++ D   + +           +IV       L 
Sbjct: 481 ANEIAWLDRLVTQASEVRASGRDTKWTQLSDILHEKVLNTGTSELPHKMIVFTEHKDTLT 540

Query: 83  RLQKAFPQ-------------GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYG 128
            LQ                  G    +     + + N     +L A   + G GLNLQ  
Sbjct: 541 YLQGRIDTLLGRPEAVETIHGGMDRAERKRVQERFVNNPATRILVA-TDAAGEGLNLQR- 598

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            +++V + L W+    +Q   RI      + G KR  +++ L+A++T +  V  +L TK 
Sbjct: 599 ADLMVNYDLPWNPNRIEQRFGRI-----HRIGQKRVCWLWNLVAKDTREGEVYGKLLTKI 653

Query: 189 TIQD 192
              D
Sbjct: 654 ETMD 657


>gi|317145894|ref|XP_003189752.1| hypothetical protein AOR_1_1066144 [Aspergillus oryzae RIB40]
          Length = 181

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 97  DPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    +E+  G     L       G G+NLQ G ++++   +WW++   +Q   R     
Sbjct: 69  ESAVREEFTNGTSSAPLLVTAGCGGTGINLQSG-SVIIQMEVWWNMNHERQAYARCL--- 124

Query: 156 QRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V VY L A+N+ ID ++ +    K  +   ++  L ++
Sbjct: 125 --RQGQDKMVKVYKLFAENSNIDIMISKCQVRKDKLNSQVMKPLVRK 169


>gi|307191279|gb|EFN74926.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Camponotus
           floridanus]
          Length = 670

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 15/142 (10%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLFAHPASCGHGL 123
           A+   I+ A    ++  +++     G+T  +     I ++ E            +   G+
Sbjct: 466 AHHQNILDAICNVAESMKIKYIRIDGKTNSEQRKHQIDQFQERDDYLAAVLSITAANAGV 525

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L    N++VF  L+W+     Q  +R+      + G    V + YL+A+NT D+ +   
Sbjct: 526 TLT-AANLVVFTELFWNPGILCQAEDRV-----HRIGQNDNVIIQYLVARNTADDYIWPL 579

Query: 184 LRTKSTI-------QDLLLNAL 198
           ++ K  +       QDL ++++
Sbjct: 580 IKNKLHVLNAAGLDQDLSIDSV 601


>gi|46126071|ref|XP_387589.1| hypothetical protein FG07413.1 [Gibberella zeae PH-1]
          Length = 1422

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
            T K  ++ N      +   +    D  +K L  + E    A  IV   +   L  L+ AF
Sbjct: 1191 TDKLAEIQN---IKLDGPSFTTKVDTLVKHLMWLRESDPGAKSIVFSQYKGFLEILRNAF 1247

Query: 89   PQ---GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             +   G     D   I+ +  +  +     H  +   GLNL    + +       +    
Sbjct: 1248 ARFGIGHVSIDDSGGIRRFKEDASVECFLLHARAHSSGLNLVNASH-VFLCEPLLNTALE 1306

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             Q I R+      + G      V+  +   T++E +   
Sbjct: 1307 LQAIARVD-----RIGQTHETTVWLYLVSGTVEESIYNL 1340


>gi|310824775|ref|YP_003957133.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397847|gb|ADO75306.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1010

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 53  DEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
           D K+ A    L  I  +   A ++V       L  LQ    +             L +  
Sbjct: 490 DAKLNAFLGVLRGIWAQEREAKVLVFTESRDTLEALQAELGREGIEALGYHGDLPLVERD 549

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  + + + P +       G G N Q+  + LV + L W     +Q I R+      +
Sbjct: 550 RQVARFRDPEGPQVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQRIGRLD-----R 603

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRL 184
            G  + V ++      T+   VL  L
Sbjct: 604 IGQSKPVEIHVFDPAGTLASDVLMLL 629


>gi|325107709|ref|YP_004268777.1| helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967977|gb|ADY58755.1| helicase domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 939

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 26/158 (16%)

Query: 50  EVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           +  D + +AL  ++      E       ++   F      L +   Q             
Sbjct: 464 QGSDARAEALLDLLYRTQQEENDPELKFLIFTEFVPTQKMLSELLEQHGFTNVCLNGSMD 523

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           L+      +E+  + +I        + G GLNLQ+  +++V + L W+    +Q I R+ 
Sbjct: 524 LESRQRVQREFSQDARI---LISTDAGGEGLNLQF-AHVIVNYDLPWNPMRIEQRIGRVD 579

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                + G K  V  + +I  N+++  V Q L  K   
Sbjct: 580 -----RIGQKHRVKAFNMIFANSVELRVHQVLEEKLKT 612


>gi|297529405|ref|YP_003670680.1| helicase [Geobacillus sp. C56-T3]
 gi|297252657|gb|ADI26103.1| helicase domain protein [Geobacillus sp. C56-T3]
          Length = 554

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 28/211 (13%)

Query: 5   HKFQRELYC------DLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVH----D 53
              +RE +        L  E   +  +   T+K +    +GAV    E+  ++++    +
Sbjct: 292 KALRRESFAGSFSLITLLREACSSREALLLTIKNMIDKCSGAVPEPLERVLEKINAVTTN 351

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            K +    +I   +   +I+   + +    LQ    Q         G         +QE 
Sbjct: 352 SKAEKALELIRSIHDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQEL 410

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +  A   + G G+NLQ+    ++ + L W+    +Q I R+      + G    
Sbjct: 411 FKHHAQVFIA-TEAGGEGINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDD 463

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V++Y    + T++E +L  L  K  + + ++
Sbjct: 464 VYIYNFAVKQTVEEHILTLLYEKIRLFERVV 494


>gi|296213297|ref|XP_002807207.1| PREDICTED: LOW QUALITY PROTEIN: E1A-binding protein p400-like
            [Callithrix jacchus]
          Length = 3069

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q A   +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1789 HAAPYFQQLRQTATPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLML 1848

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1849 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRATGINLVE-AD 1907

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+++E +L+
Sbjct: 1908 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSVEEKLLK 1954


>gi|296205540|ref|XP_002749811.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1
           [Callithrix jacchus]
          Length = 957

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWN 105
           I+ +  ++E       +V  H    L  + K             G T   +   + Q++ 
Sbjct: 717 IEYIMDLLESGKEK-FLVFAHHKVVLDAVMKELERKKVPHIRIDGSTSSAEREDLCQQFQ 775

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  +      +   GL      +++VF  L+W+     Q  +R+      + G   +
Sbjct: 776 LSQRHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSS 829

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 830 VGIHYLVAKGTADDYLWPLIQEK 852


>gi|307209215|gb|EFN86322.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Harpegnathos
           saltator]
          Length = 670

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 24/141 (17%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEWNE-GKIPLLF 113
           + A+  + E  N                +Q     G+T  +     I ++ E        
Sbjct: 473 LDAICDVAESMN----------------IQYIRIDGKTTSEQRKYQIDKFQEHDDYLAAV 516

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+ L    +++VF  L+W+     Q  +R+      + G    V + YL+A+
Sbjct: 517 LSITAANAGITLT-AAHLVVFTELFWNPGILCQAEDRV-----HRIGQNDNVIIQYLVAK 570

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           +T D+ +   ++ K  I + +
Sbjct: 571 DTADDYMWPLIKKKMDILNAV 591


>gi|295399151|ref|ZP_06809133.1| SNF2-related protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978617|gb|EFG54213.1| SNF2-related protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 555

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDP 98
            EK      + K +    +I+      +I+   + +    LQ    Q             
Sbjct: 344 MEKINAVSTNSKAEKALQLIQSIQEK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFK 402

Query: 99  CTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++W      N  ++   F    + G G+NLQ+    ++ + L W+    +Q I R+ 
Sbjct: 403 RGKKDWMKELFKNHAQV---FIATEAGGEGINLQF-CRHVINYDLPWNPMRLEQRIGRV- 457

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                + G    V++Y    +NT++E +L  L  K  + + ++
Sbjct: 458 ----HRLGQTSDVYIYNFAVKNTVEEHILTLLYEKIRLFERVV 496


>gi|317033838|ref|XP_001395547.2| C-5 cytosine-specific DNA methylase [Aspergillus niger CBS 513.88]
          Length = 2044

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAY-------HFNSDLARLQKA 87
            G V  DE   +      K+  L  I+        A I + Y           DLA++ K 
Sbjct: 1849 GGVSVDESAKY---GGSKLDKLIEILNGIPSNERALIFIQYPELIEVASKALDLAKI-KH 1904

Query: 88   FPQGRTLDKDPCTIQEWNE---GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEE 143
                 T  K    I+++ +   G+   L  +       GLNLQ   N ++F S      +
Sbjct: 1905 TAILTTDRKSMQKIEQFQQTSFGEDKALILNLGGEMAAGLNLQ-SANHVIFLSPMNAETQ 1963

Query: 144  HQQMIERI-GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            +      I  + R R+ G  R V VY+L+A+++ID  + Q  R 
Sbjct: 1964 YDYESAMIQAIGRSRRYGQTRRVHVYHLLAKHSIDVNIFQERRH 2007


>gi|138896002|ref|YP_001126455.1| Snf2/Rad54 family helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134267515|gb|ABO67710.1| Helicase, Snf2/Rad54 family [Geobacillus thermodenitrificans
           NG80-2]
          Length = 554

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
             KC      A+ +  EK      + K +    +I   N   +I+   + +    LQ   
Sbjct: 327 IDKCEGAVPEALEHVLEKINAVTTNSKAEKALELIRSINDK-VIIFTEYRATQLYLQWFL 385

Query: 89  PQ-----GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            Q                ++W      N  ++   F    + G G+NLQ+    ++ + L
Sbjct: 386 KQHGISSVPFRGGFRRGKKDWMQELFKNHAQV---FIATEAGGEGINLQF-CRYVINYDL 441

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+    +Q I R+      + G    V +Y    + T++E +L  L  K  + + ++
Sbjct: 442 PWNPMRLEQRIGRV-----HRLGQTDDVHIYNFAVKQTVEEHILTLLYEKIRLFERVV 494


>gi|170109825|ref|XP_001886119.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639049|gb|EDR03323.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1192

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +S + K   + N  + Y     +    D ++  L  I E       +V   F     ++
Sbjct: 942  GSSASNKLNYIINEVLKYSARDKFLIFSDSELS-LAHISEALQ----LVQVKFLRFTTQI 996

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
               F       ++   +         +          GLNL    + ++F    W  +  
Sbjct: 997  PAQF-------REQLVLTFETSPTYRVFLMELKHGARGLNL-ISASRVIFCEPVWQADVE 1048

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             Q I+R       + G  R + V  L  + T +E ++ R    S   D L
Sbjct: 1049 SQAIKR-----AHRIGQTRPITVKTLAIRGTAEENMVARRNALSGSHDKL 1093


>gi|196248895|ref|ZP_03147595.1| helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211771|gb|EDY06530.1| helicase domain protein [Geobacillus sp. G11MC16]
          Length = 556

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
             KC      A+ +  EK      + K +    +I   N   +I+   + +    LQ   
Sbjct: 329 IDKCEGAVPEALEHVLEKINAVTTNSKAEKALELIRSINDK-VIIFTEYRATQLYLQWFL 387

Query: 89  PQ-----GRTLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            Q                ++W      N  ++   F    + G G+NLQ+    ++ + L
Sbjct: 388 KQHGISSVPFRGGFRRGKKDWMQELFKNHAQV---FIATEAGGEGINLQF-CRYVINYDL 443

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+    +Q I R+      + G    V +Y    + T++E +L  L  K  + + ++
Sbjct: 444 PWNPMRLEQRIGRV-----HRLGQTDDVHIYNFAVKQTVEEHILTLLYEKIRLFERVV 496


>gi|56420961|ref|YP_148279.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380803|dbj|BAD76711.1| DNA/RNA helicase (SNF2 family) [Geobacillus kaustophilus HTA426]
          Length = 554

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 28/211 (13%)

Query: 5   HKFQRELYC------DLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVH----D 53
              +RE +        L  E   +  +   T+K +    +GAV    E+  ++++    +
Sbjct: 292 KALRRESFAGSFSLITLLREACSSREALFLTIKNMIDKCSGAVPEPLERVLEKINAVTTN 351

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            K +    +I   +   +I+   + +    LQ    Q         G         +QE 
Sbjct: 352 SKAEKALELIRSIHDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQEL 410

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +  A   + G G+NLQ+    ++ + L W+    +Q I R+      + G    
Sbjct: 411 FKHHAQVFIA-TEAGGEGINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDD 463

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V++Y    + T++E +L  L  K  + + ++
Sbjct: 464 VYIYNFAVKQTVEEHILTLLYEKIRLFERVV 494


>gi|71004104|ref|XP_756718.1| hypothetical protein UM00571.1 [Ustilago maydis 521]
 gi|46095987|gb|EAK81220.1| hypothetical protein UM00571.1 [Ustilago maydis 521]
          Length = 1605

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 17/121 (14%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQE 103
            K+       +       +V   +   L R+QK+                  D+       
Sbjct: 1471 KLDQSLEAYDSYEPVKSVVFSQWTKMLDRIQKSLNITGIRYTRLDGTMSRPDRTAALEAF 1530

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +  I +L     + G GLNL            +W+     Q ++RI      + G  R
Sbjct: 1531 KRDAGIEVLLVSLRAGGTGLNL-VSACRAYLMDPYWNPAVENQGLDRI-----HRMGQTR 1584

Query: 164  A 164
             
Sbjct: 1585 P 1585


>gi|307104958|gb|EFN53209.1| hypothetical protein CHLNCDRAFT_137064 [Chlorella variabilis]
          Length = 2583

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 53   DEKIKALEVI---IEKANAAPIIV--AYHFNSDLARLQKA----FPQGRTL--------- 94
              K+ ALE +           ++V  +  F  ++ RL        P GR L         
Sbjct: 1883 TTKMWALEQLLRWCAAHEEKLVVVGESLEFLREVERLLDRAALRLPGGRLLRWCKIEGST 1942

Query: 95   --DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++    +Q++  G+  +      +  HG+NL      +V     W+   + Q I R+ 
Sbjct: 1943 TDNQRTQYVQDFEGGRYQVFLLS-KAGTHGINL-VSCRRIVVLEEPWNPVYNLQAIARLF 2000

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKK 200
                 + G     FVY +     +   V  R   K  +   +++  ++K+
Sbjct: 2001 -----RYGQAHGTFVYRMYFNGAVQYNVYLRNVNKVMLFKRVIDRQSVKR 2045


>gi|289523749|ref|ZP_06440603.1| type III restriction enzyme, res subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503441|gb|EFD24605.1| type III restriction enzyme, res subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1137

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 49  KEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
           K+  + K+  L+ ++E          +++       L  L +              G  L
Sbjct: 464 KKGVETKLNELKKVMESEKLQETETKLLIFTESKDTLEYLVEKLKSWGYSVTYIHGGMNL 523

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D       ++ N+ +I +      + G G+NLQ+   ++V + + W+    +Q + R+  
Sbjct: 524 DARIKAEADFKNQAQIMV---STEAGGEGINLQF-CWLMVNYDIPWNPNRLEQRMGRV-- 577

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G +  V +Y L+A +T +  +L RL  K
Sbjct: 578 ---HRYGQRNEVHIYNLVAIDTREGQILSRLFEK 608


>gi|225559892|gb|EEH08174.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
 gi|225559942|gb|EEH08224.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1209

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLDK--D 97
                  K+  L   +IE      II+ Y  N+    + +              TL     
Sbjct: 911  VATASAKLTYLLDKVIEFQEKEKIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTR 970

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +NE + + +L        HGL++    + +   +  WD     Q I+R      
Sbjct: 971  SEYLSLFNETETVRVLLMDLRQAAHGLHI-ACASRVFIVNPIWDPNFESQAIKR-----A 1024

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +    + V+V  L+ ++T+++ +L+R   K      L +A K
Sbjct: 1025 HRISQNKPVYVETLVLKDTLEDRMLRR--RKQMSNAELRHAEK 1065


>gi|116195246|ref|XP_001223435.1| hypothetical protein CHGG_04221 [Chaetomium globosum CBS 148.51]
 gi|88180134|gb|EAQ87602.1| hypothetical protein CHGG_04221 [Chaetomium globosum CBS 148.51]
          Length = 450

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 36  ANGAVYYDEEKHW--KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG 91
           A  AV  +++ H+     H  K+ AL   ++K        +     + D A +      G
Sbjct: 277 AGEAVEDNDDDHYFSAGGHSTKMLALVEDVKKDLMTTKRTLHLLSKHLDRANIPYLRIDG 336

Query: 92  R-TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + +    + ++    +  +L     + G GLNL    N +    L W+     Q I 
Sbjct: 337 GCPVPQRQAKLDQFSESDEKRVLVMTTGTGGFGLNLTC-ANRVFIIELQWNPGVESQAIA 395

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           R       + G +  V+V   + ++T++E +  + R K  + 
Sbjct: 396 R-----AVRLGQENEVYVTRYVIRDTVEEEMRSQQRWKMQVA 432


>gi|156031343|ref|XP_001584996.1| hypothetical protein SS1G_14093 [Sclerotinia sclerotiorum 1980]
 gi|154699495|gb|EDN99233.1| hypothetical protein SS1G_14093 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1098

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++     W+ +   Q I      R  + G K    VY L++Q T++
Sbjct: 448 AGGLGLNL-AAASEVILLDQDWNPQVTNQAI-----CRAYRVGLKSPPIVYQLVSQGTVE 501

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E ++ R+  K  +   +  +++
Sbjct: 502 EQMMPRIAKKPYLLAKVTESME 523


>gi|157155470|ref|YP_001461436.1| SNF2 family helicase [Escherichia coli E24377A]
 gi|157077500|gb|ABV17208.1| helicase, SNF2 family [Escherichia coli E24377A]
          Length = 1080

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 90   QGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            + ++ +     I ++       ++     + G G+N+Q   N ++ F+  W+  +  Q  
Sbjct: 958  KSQSQNSRQRLIDDFQAQPGFGVIILSTVAVGFGVNVQK-ANHVIHFTRCWNPAKEDQAT 1016

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNA 197
            +R       + G  + V+VYY   ++    T +E +   L+ +  +   +L A
Sbjct: 1017 DR-----AYRIGQTKDVYVYYPTVKDTEITTFEETLDDLLQRRRALARDMLCA 1064


>gi|328871058|gb|EGG19429.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 830

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 14/118 (11%)

Query: 52  HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLAR---LQKAFPQG-------RTLDKDPCT 100
              K+  +  +I+       I++  ++   L     L K    G          D     
Sbjct: 551 DSGKLLFVGDLIKSLPRGEKIVLVSNYTQTLDIFETLCKELSFGFLRLDGQVEADSRQFL 610

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           I ++N+   +  +      + G G+NL  G N +V F   W+     Q +ER+    Q
Sbjct: 611 ITKFNDPADQHKVFLLSAKAGGVGINL-IGANHIVLFDPDWNPAVDLQAMERVWRQGQ 667


>gi|261417712|ref|YP_003251394.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|319767479|ref|YP_004132980.1| helicase [Geobacillus sp. Y412MC52]
 gi|261374169|gb|ACX76912.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|317112345|gb|ADU94837.1| helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 554

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 28/211 (13%)

Query: 5   HKFQRELYC------DLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVH----D 53
              +RE +        L  E   +  +   T+K +    +GAV    E+  ++++    +
Sbjct: 292 KALRRESFAGSFSLITLLREACSSREALFLTIKNMIDKCSGAVPEPLERVLEKINAVKTN 351

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEW 104
            K +    +I   +   +I+   + +    LQ    Q         G         +QE 
Sbjct: 352 SKAEKALELIRSIHDK-VIIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQEL 410

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +  A   + G G+NLQ+    ++ + L W+    +Q I R+      + G    
Sbjct: 411 FKHHAQVFIA-TEAGGEGINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDD 463

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V++Y    + T++E +L  L  K  + + ++
Sbjct: 464 VYIYNFAVKQTVEEHILTLLYEKIRLFERVV 494


>gi|317153368|ref|YP_004121416.1| helicase domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943619|gb|ADU62670.1| helicase domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 966

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 49  KEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           +   D K +AL   I      E      +++   F     ++ K F + R          
Sbjct: 477 QAGPDAKAEALIEWIYKLQAEENEPDMKVLIFTEFVPT-QQMLKEFLEARGISVVTLNGS 535

Query: 93  -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +++       +   K   +     + G GLNLQ+  ++++ + + W+    +Q I R+
Sbjct: 536 MAMEERGAAQDAF--RKSHRVLVSTDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRV 592

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  + V     + +++++  V + L  K
Sbjct: 593 D-----RIGQPKTVQAINFVFEDSVEFRVREVLEQK 623


>gi|256378169|ref|YP_003101829.1| helicase domain protein [Actinosynnema mirum DSM 43827]
 gi|255922472|gb|ACU37983.1| helicase domain protein [Actinosynnema mirum DSM 43827]
          Length = 1131

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 43  DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK-------------A 87
           D ++ W E+   +I     +I  +   A  +IV       L  L +             A
Sbjct: 472 DTDRKWVEL--RRILQDNDLIHPDARQARKLIVFTEHRDTLDHLDRKIGALFGAPGSVLA 529

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G    +     +E+       +     + G GLNLQ   +++V + L W+    +Q 
Sbjct: 530 IHGGVNRFRRREITEEFTANPACRVLLATDAAGEGLNLQ-AAHMVVNYDLPWNPNRIEQR 588

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             R+      + G      ++ L+A  T +  V   L  K   Q
Sbjct: 589 FGRV-----HRIGQTEVCRLWNLVAVGTREGEVFATLLRKVEEQ 627


>gi|297623430|ref|YP_003704864.1| helicase domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297164610|gb|ADI14321.1| helicase domain protein [Truepera radiovictrix DSM 17093]
          Length = 1160

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +   +   LA        ++ W+E+     ++ E++  + +   +++       L  LQ+
Sbjct: 461 AILKRLEALAARVKQSGTDRKWEELSRLLQESSEMLSPEGSRRKLVIFTEHRDTLLYLQE 520

Query: 87  AFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              +             G   ++       + + K  L+     + G G+NLQ   +++V
Sbjct: 521 RVTRLLGRPEAVVAIHGGTGREERGKVQATFTQNKDVLVLLATDAAGEGINLQR-AHLMV 579

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + L W+    +Q   RI      + G      ++ L+AQ T +  V +RL  K
Sbjct: 580 NYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAQETREGDVFKRLFDK 628


>gi|298712299|emb|CBJ26750.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 238

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +      +   G+NL    N +       +L   +Q I R+      + G  R 
Sbjct: 106 NDPPTTVFLLSVRAGAVGINLTQ-ANHVFLLEPMLNLALEKQAIGRV-----HRLGQTRP 159

Query: 165 VFVYYLIAQNTIDELVLQRLR 185
           V V  L+  ++++  +L   +
Sbjct: 160 VTVTKLVLADSVETRILAMRK 180


>gi|83589502|ref|YP_429511.1| helicase-like [Moorella thermoacetica ATCC 39073]
 gi|83572416|gb|ABC18968.1| Helicase-like protein [Moorella thermoacetica ATCC 39073]
          Length = 972

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 34/177 (19%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARL 84
           KCL LA        E+     +D K   L  II      E       I+   F    A L
Sbjct: 473 KCLALA--------ERATAGRNDIKFTRLLEIINELRIQENNPRLKFIIFTEFRETQAYL 524

Query: 85  QKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           ++                 T ++     +   E           + G G+NLQ+  +IL+
Sbjct: 525 EERLTSLGYRTALINGAMSTTERIAQVERFRREAD---FLISTDAGGEGINLQF-CHILI 580

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + L W+    +Q I RI      + G +  V V  L   +T++  V + +  K   
Sbjct: 581 NYDLPWNPMRLEQRIGRID-----RIGQEHDVKVINLQLADTVENRVREVIENKLDT 632


>gi|53803233|ref|YP_115086.1| prophage LambdaMc01, SNF2 family helicase [Methylococcus capsulatus
           str. Bath]
 gi|53756994|gb|AAU91285.1| prophage LambdaMc01, helicase, SNF2 family [Methylococcus
           capsulatus str. Bath]
          Length = 925

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
           +  L  +  +     ++V   +   +  + +   Q           G          + +
Sbjct: 506 LDGLGYLWRQNPNEKVVVFATYLGTVDLIAREIEQAYPGQGVVVLRGGDHGAKVAAERRF 565

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +    A+   G+NLQ+   IL  F L W+  + +Q I RI      + G    
Sbjct: 566 RQKDGPRVLVCTAAGREGINLQF-ARILFNFDLPWNPMDVEQRIGRI-----HRYGQNHT 619

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
             VY L+  +TI+  +   L  K
Sbjct: 620 AQVYNLVLSDTIEGRIFLLLDEK 642


>gi|321156899|emb|CBW38888.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae]
          Length = 2081

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1717 EKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1774

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1775 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1805


>gi|302831485|ref|XP_002947308.1| hypothetical protein VOLCADRAFT_87560 [Volvox carteri f. nagariensis]
 gi|300267715|gb|EFJ51898.1| hypothetical protein VOLCADRAFT_87560 [Volvox carteri f. nagariensis]
          Length = 1951

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +GK  +L       G GLNL    + +V      D     Q + R+      + G  R  
Sbjct: 1819 QGKPRVLLLQLKQGGAGLNLTEAQH-VVLVEPQLDPAAEAQAVGRV-----HRIGQCRPT 1872

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             V+  +  +T++E V +    ++   DL
Sbjct: 1873 HVHRFVVVHTVEEQVYKLATARARGMDL 1900


>gi|109100917|ref|XP_001086469.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 isoform 2
           [Macaca mulatta]
 gi|109100919|ref|XP_001086594.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 isoform 3
           [Macaca mulatta]
          Length = 949

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 671 ALDAAAKEMTTMDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 729

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 730 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 788

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 789 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 843

Query: 187 K 187
           K
Sbjct: 844 K 844


>gi|190194425|ref|NP_775089.1| E1A-binding protein p400 isoform 2 [Mus musculus]
          Length = 2999

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1719 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1778

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1779 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1837

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1838 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1876


>gi|153945880|ref|NP_083613.2| E1A-binding protein p400 isoform 1 [Mus musculus]
          Length = 3035

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1755 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1814

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1815 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1873

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1874 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1912


>gi|157821357|ref|NP_001100619.1| E1A binding protein p400 [Rattus norvegicus]
 gi|149063710|gb|EDM14033.1| E1A binding protein p400, isoform CRA_a [Rattus norvegicus]
          Length = 3034

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1757 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1816

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1817 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1875

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1876 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1914


>gi|148688062|gb|EDL20009.1| E1A binding protein p400, isoform CRA_c [Mus musculus]
          Length = 3004

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1724 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1783

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1784 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1842

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1843 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1881


>gi|148688060|gb|EDL20007.1| E1A binding protein p400, isoform CRA_a [Mus musculus]
          Length = 3035

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1755 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1814

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1815 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1873

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1874 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1912


>gi|55976523|sp|Q8CHI8|EP400_MOUSE RecName: Full=E1A-binding protein p400; AltName: Full=Domino homolog;
            Short=mDomino; AltName: Full=p400 kDa SWI2/SNF2-related
            protein
          Length = 3072

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1792 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1851

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1852 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1910

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1911 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1949


>gi|74217234|dbj|BAC32913.2| unnamed protein product [Mus musculus]
          Length = 1323

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
             QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 756 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 815

Query: 87  -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                     +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 816 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 874

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 875 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 913


>gi|27348239|dbj|BAC45254.1| mDomino-S [Mus musculus]
          Length = 2999

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1719 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1778

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1779 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1837

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1838 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1876


>gi|27348237|dbj|BAC45253.1| mDomino [Mus musculus]
          Length = 3035

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              QL         E    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1755 LQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLN 1814

Query: 87   -------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N + +I        S   G+NL    + +VF+   
Sbjct: 1815 FHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINLVE-ADTVVFYDND 1873

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1874 LNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1912


>gi|261334529|emb|CBH17523.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1068

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 18/202 (8%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +R   C      +      +K    + +   AV   E   +  +  + +   E II + N
Sbjct: 619 KRRGLCQPPPGYVPMPEEGTKLYVSILIIKAAVLRGERCLFFSMSTKLLDIFEGIIAEMN 678

Query: 68  AAPIIVAYHFNS-DLAR-LQKAFPQGR-TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
                         L+R +      GR T  +    ++ +       L      + G GL
Sbjct: 679 DR------WLKDGSLSRPIVFCRLDGRKTEWERSEALRSFASSTGADLFLLSTKAGGIGL 732

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            +     +++               +   + R  + G  + V+ Y L+   T +  + Q+
Sbjct: 733 TITSATRVIIADG------SFNPADDTQAIGRAYRYGQTQPVYAYRLVCYQTFEHRMFQQ 786

Query: 184 LRTKSTIQDLLLN--ALKKETI 203
              K  +   ++   +LK++++
Sbjct: 787 KLAKEWLFRTVVEEASLKRDSL 808


>gi|194396911|ref|YP_002037980.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
 gi|194356578|gb|ACF55026.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
          Length = 2074

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1710 EKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1767

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1768 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1798


>gi|71755459|ref|XP_828644.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834030|gb|EAN79532.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 1068

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 18/202 (8%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +R   C      +      +K    + +   AV   E   +  +  + +   E II + N
Sbjct: 619 KRRGLCQPPPGYVPMPEEGTKLYVSILIIKAAVLRGERCLFFSMSTKLLDIFEGIIAEMN 678

Query: 68  AAPIIVAYHFNS-DLAR-LQKAFPQGR-TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
                         L+R +      GR T  +    ++ +       L      + G GL
Sbjct: 679 DR------WLKDGSLSRPIVFCRLDGRKTEWERSEALRSFASSTGADLFLLSTKAGGIGL 732

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            +     +++               +   + R  + G  + V+ Y L+   T +  + Q+
Sbjct: 733 TITSATRVIIADG------SFNPADDTQAIGRAYRYGQTQPVYAYRLVCYQTFEHRMFQQ 786

Query: 184 LRTKSTIQDLLLN--ALKKETI 203
              K  +   ++   +LK++++
Sbjct: 787 KLAKEWLFRTVVEEASLKRDSL 808


>gi|242762199|ref|XP_002340327.1| helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723523|gb|EED22940.1| helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 935

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 51  VHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRT-LDKDPC 99
               K+  L   + +  N+   I+   +   L          +++ A   G+T L +   
Sbjct: 727 GFSSKMTMLVSDLRKDMNSTKSIIFSCWTRTLDLVGEHLKSAKIKYARIDGKTPLSERQK 786

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           T+  ++   + P+L     +   GLNL    N +      W+     Q I R       +
Sbjct: 787 TLDNFDSTREKPVLVMTFGTGAFGLNL-KSVNRVFIVEPQWNPAVENQAIAR-----AIR 840

Query: 159 AGFKRAVFVYYLIAQNTIDE 178
            G K  V V   + + +I+E
Sbjct: 841 LGQKEQVLVIKYLVKGSIEE 860


>gi|328853096|gb|EGG02237.1| hypothetical protein MELLADRAFT_91569 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++     +  N+  I        + G GLN+    + +      W+ +  QQ I+ + 
Sbjct: 88  THERTCQLNRFKNDNNIEAFIVSIEAGGVGLNMTC-ADEVYLMDAHWNPQIVQQAIDCL- 145

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                + G    V VY+++A  ++++ +
Sbjct: 146 ----HRIGQTHPVKVYHVVAGQSVEQHL 169


>gi|327474192|gb|EGF19600.1| SNF2 family protein [Streptococcus sanguinis SK408]
          Length = 2077

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1713 EKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1770

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1771 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1801


>gi|290986627|ref|XP_002676025.1| predicted protein [Naegleria gruberi]
 gi|284089625|gb|EFC43281.1| predicted protein [Naegleria gruberi]
          Length = 467

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 39/230 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
              + +R++  +L  +    +    K     Q+    +  D +K + +    K++  + +
Sbjct: 238 MIRRLKRDVLTELPPKRRSKYYLHVKEEDLKQING--IGGDSKKKFYQKDWGKLQKDKDV 295

Query: 63  IEK--------------------ANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           I K                          ++  H    +  +++              G 
Sbjct: 296 IAKYVKTAEAKIDGIRSYLRKIIPKKEKFLIFAHHRRVMDAIEETDDDVKTYEYIRIDGE 355

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T D++       +     +        G GLN     + +VF  L W+     Q  +R  
Sbjct: 356 TKDREGLAHHFRSTENCLVAILSMNVAGCGLNFVP-CSTVVFAELCWNPALLNQCEDRC- 413

Query: 153 VTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                + G K A V + YL+A+ T+D+ +   L  K+ I DL LN  K+E
Sbjct: 414 ----HRIGQKGAFVDITYLLAKKTLDDFMWDLLTKKADITDLALNGQKEE 459


>gi|150006233|ref|YP_001300977.1| putative ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934657|gb|ABR41355.1| putative ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
          Length = 921

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 29/163 (17%)

Query: 53  DEKIKALEVIIEKANAA------PIIVAYHFNSDLARLQKAFPQGR-----------TLD 95
           D K  AL   I             I+V   F    A L +   +               +
Sbjct: 453 DAKTTALIQNIYSLQDKYNDSKLKILVFTEFRKTQAYLNEQLEKAGFTTVGINGNMDLQE 512

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I+  N  ++ +      + G  LN+Q+  NI+  + L W+    +Q I R+    
Sbjct: 513 RQKALIKFKNNAQVMIA---TDAAGESLNMQF-CNIVFNYDLPWNPMAIEQRIGRVD--- 565

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K  V  Y ++  N++D  V + +  K    D +LN L
Sbjct: 566 --RIGQKHPVIAYNMLTNNSVDTRVYEIIVEKL---DAILNEL 603


>gi|289621669|emb|CBI51580.1| unnamed protein product [Sordaria macrospora]
          Length = 1534

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            K  ++ N  +  +   H+    D  ++ L  + +    A  IV   +   L  L +AF +
Sbjct: 1247 KLAEIQN--IDLENGPHYTTKVDTLLRHLLWLRQSDPGAKSIVFSQYPDFLHALAQAFER 1304

Query: 91   GRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             R              +   ++  I +   H  +   GLNL    + +       +    
Sbjct: 1305 YRIGYSSFDRGAISSVVCFRDDPSIEVFLLHARAHASGLNLVNASH-VFLCEPLLNTALE 1363

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             Q I R+      + G K+   V+  I   T+++ V + 
Sbjct: 1364 LQAIARVD-----RIGQKQETTVWLYIVDGTVEQNVYEL 1397


>gi|307110121|gb|EFN58358.1| hypothetical protein CHLNCDRAFT_142431 [Chlorella variabilis]
          Length = 713

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +      +   GL L    + +       +    QQ + R+      + G +R V
Sbjct: 596 DDEVRVFLLSHKAGAQGLTLVRASH-VFLLEPALEPAIEQQAVARV-----HRIGQQRPV 649

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTI 190
            V  L+ + +I+  VL     K  +
Sbjct: 650 VVTRLLVKESIEHRVLAVQEAKHAL 674


>gi|307127309|ref|YP_003879340.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
 gi|306484371|gb|ADM91240.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
          Length = 2074

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1710 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1767

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1768 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1798


>gi|182684275|ref|YP_001836022.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
 gi|182629609|gb|ACB90557.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
          Length = 2077

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1713 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1770

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1771 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1801


>gi|322376606|ref|ZP_08051099.1| SNF2 family protein [Streptococcus sp. M334]
 gi|321282413|gb|EFX59420.1| SNF2 family protein [Streptococcus sp. M334]
          Length = 2077

 Score = 62.3 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1713 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1770

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1771 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1801


>gi|115443362|ref|XP_001218488.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188357|gb|EAU30057.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 2106

 Score = 62.3 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 25/172 (14%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            + N +    ++         K+  L  I+ +       ++   F   +    KA      
Sbjct: 1905 IINASTLGCDKDRSTRFGGTKMDKLVQIVGDIPTNERALLFIQFPELIDIASKALDMAGV 1964

Query: 94   LD--------KDPCTIQEWNE---GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDL 141
                           ++++ +   G   +L     S    GLN+Q   N ++F S     
Sbjct: 1965 KHIAISATDRTSAQKVEQFQKTSFGDNKVLILTLGSEMAAGLNVQC-ANHVIFLSPMLAQ 2023

Query: 142  EEHQ------QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             ++       Q I R      R+ G  + V +Y+L+A+ TID  + Q  R+K
Sbjct: 2024 TQYDYDSAMTQAIGRC-----RRYGQNKHVHIYHLLAKRTIDVNIFQERRSK 2070


>gi|115391319|ref|XP_001213164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194088|gb|EAU35788.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1339

 Score = 62.3 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA-PIIVAY-------HFNSDLA------RLQKAFP 89
             +         K+  L   +++ +    II+ Y            L       R+     
Sbjct: 913  AQTKLVATASAKLTYLLDQVDQLHKEEKIIIFYDNNNSAYWIAEGLELLGIDFRIYANTL 972

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +           +E     + +L        HGL++     + +  +  W      Q I+
Sbjct: 973  KPALRTAYLKLFRE--SEDVRVLLMDLRQASHGLHIANASRVFI-VNPIWQPNVESQAIK 1029

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
            R       + G +R VFV  L+ ++T+++ +L R +           K  + D  ++++
Sbjct: 1030 R-----AHRIGQRRPVFVETLVLKDTLEDKMLTRRKAMSDMEIQRAEKDLLDDQTMSSI 1083


>gi|258564666|ref|XP_002583078.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237908585|gb|EEP82986.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1355

 Score = 62.3 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 33/181 (18%)

Query: 39   AVYYD-EEKHWKEVHD--------EKIKALEV----IIEKANAAPIIVAYHFNSDLARLQ 85
            A+Y D E +  KE+ D         KI  L      +      A  IV   + S L  L 
Sbjct: 1080 AIYSDIESRDLKEIKDIDIDGSFGTKIDTLARHLIWLRHHDPGAKSIVFSQYKSFLGILA 1139

Query: 86   KAFPQGRTLD---KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             AF + +        P  I+ +  E  +     H  +   GLNL    + +       + 
Sbjct: 1140 NAFKRFKIEFSSIDSPDGIERFKKEPSVECFLLHAKAHSSGLNLVNATH-VFLCEPLINT 1198

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ----------RLRTKSTIQ 191
                Q I R+      + G  R   V+  +  ++++E + Q            + K   Q
Sbjct: 1199 AIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYQISVSRRLEHIARKRKQVSQ 1253

Query: 192  D 192
            +
Sbjct: 1254 N 1254


>gi|225856813|ref|YP_002738324.1| SNF2 family protein [Streptococcus pneumoniae P1031]
 gi|225725125|gb|ACO20977.1| SNF2 family protein [Streptococcus pneumoniae P1031]
          Length = 2076

 Score = 62.3 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1712 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1769

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1770 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1800


>gi|328852113|gb|EGG01261.1| hypothetical protein MELLADRAFT_79036 [Melampsora larici-populina
            98AG31]
          Length = 2231

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 55   KIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQ---EWN 105
            K++ L  +I K  +   ++V   F+  L ++ +A         R        +Q   E+ 
Sbjct: 2063 KLERLCHLISKLRSTDRVLVFVQFSDLLDKVYEALEHRDIGVARVKGTARQQMQVMTEFQ 2122

Query: 106  E---GKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E     I +L  H   S   G NL           L+   ++  +  E   + R R+ G 
Sbjct: 2123 EEADPDIRVLLLHATDSSASGANLTNANYAFFVSPLFLPTQDKFKACETQAIGRLRRYGQ 2182

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETI 203
             + V V  L+  +TID  +      K   QD L   + A +K+ I
Sbjct: 2183 TKKVHVIRLLTTDTIDTQIYGHRHQK--TQDELRLEIEAARKKQI 2225


>gi|322385340|ref|ZP_08058985.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321270599|gb|EFX53514.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 2077

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1713 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1770

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1771 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1801


>gi|319412029|emb|CBY91962.1| SNF2 family protein [Streptococcus pneumoniae]
          Length = 2074

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1710 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1767

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RQ    + V +Y+ I + + D  +      K
Sbjct: 1768 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 1798


>gi|323455831|gb|EGB11699.1| hypothetical protein AURANDRAFT_1193 [Aureococcus anophagefferens]
          Length = 453

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 22/151 (14%)

Query: 54  EKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
             + ALE  ++     +      HF     R+  + P      +        N+ K+   
Sbjct: 321 AVLDALEADLVRGLKGSS----AHF-----RIDGSTPPAE---RQRLVESFQNDPKVRCA 368

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI- 171
                + G GL L    + ++F  L W      Q  +R       + G + +V V+YL+ 
Sbjct: 369 LLSVTAAGVGLTLT-AASAVLFAELHWTPGVLVQAEDR-----AHRIGQRSSVNVHYLVL 422

Query: 172 --AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              ++++D  + + +  K ++    L+  KK
Sbjct: 423 KDEKDSVDMALWRSIARKVSVVGAALDGAKK 453


>gi|226290023|gb|EEH45507.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1252

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ--KAFPQGRTLDK-- 96
                  K+  L   ++E      II+ Y        + ++   +   +      TL    
Sbjct: 897  VATASAKLTYLLDKVLEFQEKEKIIIFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSD 956

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N  + + +L        HGL++     + +  +  WD     Q I+R     
Sbjct: 957  RSAYLALFNTTELVRVLLMDLRQASHGLDIPCASRVFI-VNPIWDPNVESQAIKR----- 1010

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +    + V+V  L+ +NT+++ +L+R   K      L +A K
Sbjct: 1011 AHRISQGKPVYVETLVLKNTLEDKMLRR--RKQMSNAELRHAEK 1052


>gi|225682607|gb|EEH20891.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1275

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ--KAFPQGRTLDK-- 96
                  K+  L   ++E      II+ Y        + ++   +   +      TL    
Sbjct: 920  VATASAKLTYLLDKVLEFQEKEKIIIFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSD 979

Query: 97   DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N  + + +L        HGL++     + +  +  WD     Q I+R     
Sbjct: 980  RSAYLALFNTTELVRVLLMDLRQASHGLDIPCASRVFI-VNPIWDPNVESQAIKR----- 1033

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +    + V+V  L+ +NT+++ +L+R   K      L +A K
Sbjct: 1034 AHRISQGKPVYVETLVLKNTLEDKMLRR--RKQMSNAELRHAEK 1075


>gi|301061086|ref|ZP_07201883.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
 gi|300444880|gb|EFK08848.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
          Length = 932

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 34/184 (18%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---EKANAAP---IIVAYHF 77
           N  ++    LQ A   +        +   D K +AL   I   +     P    +V   F
Sbjct: 436 NERAEVKLLLQTATRCI--------QAGSDAKAEALLDWIYKLQAEEGDPELKFLVFTEF 487

Query: 78  NSDLARLQKAFPQGRT----------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQ 126
                 LQ    +             +D+     + +  E ++        + G GLNLQ
Sbjct: 488 VPTQQMLQAFLSERGFPVVCLNGSMDMDERQKVQESFAQEARV---LVSTDAGGEGLNLQ 544

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           +  ++++ + + W+    +Q I R+      + G    V     + +++++  V + L  
Sbjct: 545 F-CHVVINYDIPWNPMRLEQRIGRVD-----RIGQTHVVRAVNFVFEDSVEHRVREVLEE 598

Query: 187 KSTI 190
           K  +
Sbjct: 599 KLAV 602


>gi|67539812|ref|XP_663680.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|40738861|gb|EAA58051.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|259479739|tpe|CBF70236.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_2G09120)
            [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 23/183 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQ---------KA 87
            G    D ++  K     K++AL  II K       ++   F  DL  +          K 
Sbjct: 2181 GDSNGDIDRSSKHGGT-KLEALINIITKFPVEERALLFVQF-PDLMTVASMALSSAGIKH 2238

Query: 88   FPQGRTLDKDPCTIQEWNE---GKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEE 143
                 T  K    I+++ +   G   +L  +  +    GLNLQ   N ++F S +    +
Sbjct: 2239 IIITPTDQKTSSKIEKFQKEGFGDTKVLILNLGNEMAAGLNLQC-ANHVIFLSPFLAETQ 2297

Query: 144  HQ-QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL-----LLNA 197
            +    +    V R R+ G  R V +Y+L+A+ TID  V Q  R    + +      LL+A
Sbjct: 2298 YDYDSVMIQAVGRSRRYGQTRHVHIYHLLAKMTIDVNVFQERRGNKVLVERGGRATLLDA 2357

Query: 198  LKK 200
             + 
Sbjct: 2358 EEA 2360


>gi|301755790|ref|XP_002913754.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Ailuropoda melanoleuca]
          Length = 959

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWN 105
           I+ +  ++E       +V  H    L+ + +             G T   D   + Q++ 
Sbjct: 719 IEYILDLLES-GREKFLVFAHHKVVLSAITRELERKHVPHIRIDGSTSSADREDLCQQFQ 777

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K  +      +   GL      +++VF  L+W+     Q  +R+      + G   +
Sbjct: 778 LFEKHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLLQAEDRV-----HRIGQASS 831

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 832 VSIHYLVARGTADDYLWPLIQEK 854


>gi|281340244|gb|EFB15828.1| hypothetical protein PANDA_001570 [Ailuropoda melanoleuca]
          Length = 957

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI-QEWN 105
           I+ +  ++E       +V  H    L+ + +             G T   D   + Q++ 
Sbjct: 717 IEYILDLLES-GREKFLVFAHHKVVLSAITRELERKHVPHIRIDGSTSSADREDLCQQFQ 775

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K  +      +   GL      +++VF  L+W+     Q  +R+      + G   +
Sbjct: 776 LFEKHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLLQAEDRV-----HRIGQASS 829

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V ++YL+A+ T D+ +   ++ K
Sbjct: 830 VSIHYLVARGTADDYLWPLIQEK 852


>gi|328875547|gb|EGG23911.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1107

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCT-IQEWNEGK 108
           L+  +E  +    I+  H    L  +               G T  +     +  +    
Sbjct: 662 LKDKLEVFDGK-FIIFAHHLDVLDGISNVLKSRNCEYIRIDGNTNVQTRADYVNLFQTDD 720

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I        +   GL L    N+++F  L+W      Q  +R       + G   +V +
Sbjct: 721 TIRAAVLSLTAASTGLTLT-AANLVIFAELYWTPGTLFQAEDR-----AHRYGQTSSVLI 774

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YL+   ++DE +   +  K  +   +L+ 
Sbjct: 775 QYLVGIGSVDESIWNMIEEKKDVLGRVLDG 804


>gi|325498704|gb|EGC96563.1| SNF2 family helicase [Escherichia fergusonii ECD227]
          Length = 1080

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 95   DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +     I ++       ++     + G G+N+Q   N ++ F+  W+  +  Q  +R   
Sbjct: 963  NSRQRLIDDFQAQPGFGVIILSTVAVGFGVNVQK-ANHVIHFTRCWNPAKEDQATDR--- 1018

Query: 154  TRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNA 197
                + G  + V+VYY   ++    T +E +   L+ +  +   +L A
Sbjct: 1019 --AYRIGQTKDVYVYYPTVRDSEITTFEETLDDLLQRRRALAKDMLCA 1064


>gi|313224277|emb|CBY20066.1| unnamed protein product [Oikopleura dioica]
          Length = 817

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 53  DEKIKALEV-IIEKANAA--PIIVAYHFNSDLARLQKAFP------------QGRTLDKD 97
           D KIKA+   +IEK       IIV  H  + +  L++                 R+ D+ 
Sbjct: 473 DAKIKAVSEYLIEKLENESEKIIVFAHHRAVIDSLEQNISPKIKGNLIKITGSTRSDDRT 532

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N   I        +   G+ L    + +VF  L +      Q  +R       
Sbjct: 533 TYVEQFQNNENIKCALLSITAVNMGVTLTK-ASTVVFAELHYTPGVMVQAEDR-----AH 586

Query: 158 QAGFKRAVFVYYLIAQNTIDELV 180
           + G +  V + YLIA+NT DE +
Sbjct: 587 RIGRETDVNIEYLIAKNTADEWI 609


>gi|253699642|ref|YP_003020831.1| SNF2-related protein [Geobacter sp. M21]
 gi|251774492|gb|ACT17073.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1248

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +        ++   P + G G+N+Q   N ++ ++  W+  +  Q  +R     
Sbjct: 985  RQKKIKEYQERPGFGVIILSPLAVGFGVNIQ-AANHVIHYTRMWNPAKEDQATDR----- 1038

Query: 156  QRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNA 197
              + G  + V+VY  +  +    T D  +   L  K  I   +LN 
Sbjct: 1039 AYRIGQTKDVYVYTPVVVSPEFTTFDAKLDALLEWKRGISADMLNG 1084


>gi|28868866|ref|NP_791485.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852105|gb|AAO55180.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 805

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 24/149 (16%)

Query: 52  HDEKIKAL-EVIIEKAN----AAPIIVAYHFNSDLARLQKAF------PQGRTLD----- 95
           +D K+K   E II K +       +++   + +    ++ A        Q   ++     
Sbjct: 371 NDLKLKLFIEEIIGKIHVANPDEKVLIFTEYRTTQRYMRDALANHYGGDQVELINGSMRH 430

Query: 96  -KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I+ +   +         + G G+NLQ   +++V + L W+     Q I R+   
Sbjct: 431 AERREAIKRFE--QQARFLISTEAGGEGINLQNQCHVMVNYDLPWNPMRLVQRIGRL--- 485

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
              + G K+ V V+ +   +++D+ ++  
Sbjct: 486 --YRYGQKKKVVVFNIQQTDSLDQNIVDL 512


>gi|16741295|gb|AAH16482.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
 gi|123981668|gb|ABM82663.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [synthetic construct]
 gi|123996475|gb|ABM85839.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [synthetic construct]
          Length = 954

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 676 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 734

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 793

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 848

Query: 187 K 187
           K
Sbjct: 849 K 849


>gi|328778817|ref|XP_624010.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Apis mellifera]
          Length = 673

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 31/199 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           +E+    +    +  N+  K    LQ      YY+E          K KA+   + K   
Sbjct: 410 KEMLEISKKLEKKVLNNLEKHNTLLQ------YYNESSI------AKQKAICDYVSKLFI 457

Query: 67  NAAPIIVAYHFNSDLARLQKAFP---------QGRTL-DKDPCTIQEWNEGKIPLL-FAH 115
           N    I+  H ++ L  + +             G+T  ++    I ++      +     
Sbjct: 458 NKQKCIIFAHHHNILNAICEVVESMNIKFIRIDGKTNPERRKYEIDKFQNNDSYIAAVLS 517

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+ L     +++F  L+W+     Q  +R+      + G  + V + YL+A++T
Sbjct: 518 ITAANAGITLT-AAQLVIFAELFWNPGILCQAEDRV-----HRIGQYKNVIIQYLVAKHT 571

Query: 176 IDELVLQRLRTKSTIQDLL 194
            D+ +   ++ K  + + +
Sbjct: 572 ADDYLWPLIQKKMNVLNEV 590


>gi|302926211|ref|XP_003054249.1| hypothetical protein NECHADRAFT_30723 [Nectria haematococca mpVI
            77-13-4]
 gi|256735190|gb|EEU48536.1| hypothetical protein NECHADRAFT_30723 [Nectria haematococca mpVI
            77-13-4]
          Length = 1145

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 18/163 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ-K 86
            A GA+   E          K+  L   II+      I+V Y       +  S L  LQ +
Sbjct: 858  AEGALGPLEAARITSTASSKLSYLIDGIIKYQEDEKIVVFYENENAAWYLASVLETLQIQ 917

Query: 87   AFPQGR--TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                 R  T  +    ++ +       +L         GL+++   + + F S   + + 
Sbjct: 918  HLIYARGLTNKRKGQYVKTFLVNPDFRVLLMDITQAAFGLDIRV-ASRIYFISPVLNPQV 976

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q I R      R+   ++ V V  L+  N+I+E++++R + 
Sbjct: 977  EAQAIGR-----ARRISQQKPVSVETLVLSNSIEEIIIERKQH 1014


>gi|6693791|gb|AAF24984.1|AF082179_1 HepA-related protein HARP [Homo sapiens]
          Length = 954

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 676 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 734

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 793

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 848

Query: 187 K 187
           K
Sbjct: 849 K 849


>gi|21071060|ref|NP_054859.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Homo sapiens]
 gi|187761314|ref|NP_001120679.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Homo sapiens]
 gi|60390962|sp|Q9NZC9|SMAL1_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; Short=hHARP;
           AltName: Full=Sucrose nonfermenting protein 2-like 1
 gi|18463933|gb|AAL73034.1|AF432223_1 SMARCAL1 [Homo sapiens]
 gi|7861961|gb|AAF70454.1| HARP [Homo sapiens]
 gi|27696616|gb|AAH43341.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
 gi|62702171|gb|AAX93097.1| unknown [Homo sapiens]
 gi|119590973|gb|EAW70567.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
          Length = 954

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 676 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 734

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 793

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 848

Query: 187 K 187
           K
Sbjct: 849 K 849


>gi|289618275|emb|CBI54999.1| unnamed protein product [Sordaria macrospora]
          Length = 1110

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 72   IVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            +V   + S L  ++ AF              T       + ++  +  + ++     + G
Sbjct: 955  VVFSGWTSHLDLIELAFNDVGIIFTRLDGKMTRTARTAAMDKFREDPSVQVILVSIMAGG 1014

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    ++ V     ++     Q ++R+      + G KR V     I  N+ +E +
Sbjct: 1015 LGLNLTTASSVYVM-EPQFNPAAEAQAVDRV-----HRLGQKRPVRTVRYIMANSFEEKM 1068

Query: 181  LQRLRTKSTIQDLLLNALKK 200
            L+    K  +  L ++  +K
Sbjct: 1069 LKLQDKKKKLASLSMDGREK 1088


>gi|114583208|ref|XP_516076.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 6 [Pan
           troglodytes]
 gi|114583210|ref|XP_001153008.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 3 [Pan
           troglodytes]
 gi|114583212|ref|XP_001153124.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 5 [Pan
           troglodytes]
          Length = 954

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 676 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 734

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 793

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 848

Query: 187 K 187
           K
Sbjct: 849 K 849


>gi|255087256|ref|XP_002505551.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226520821|gb|ACO66809.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 700

 Score = 62.3 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 57  KALEVIIEKAN-AAPIIVAYHFNSDLAR----LQKAFPQGRTLD------KDPCTIQEWN 105
             LE +++ +      +   H    L      L+K   Q   +D      +    +Q++ 
Sbjct: 461 DYLETLLDGSGAGDKFLFFAHHKELLDAASTVLRKRKTQFIRIDGTTPTTERGGLVQQFQ 520

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I +      + G GL L    + +VF  L W   +  Q  +R       + G   +
Sbjct: 521 TVDAIKVAVLSIKAAGMGLTLT-AASTVVFGELSWTPGDIVQAEDR-----AHRIGQASS 574

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V +L A+N++D+++   ++ K      +L+    + + +
Sbjct: 575 VLVQFLHAKNSVDDVMWGSVQNKLENLGQVLDGHMGDHLEI 615


>gi|320040099|gb|EFW22033.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 2095

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 43/193 (22%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRT 93
            G V    +  W E    KI  L  +++  +  P    +++   F   +  + KA  +   
Sbjct: 1880 GEVPQSPDDSWTEFGGSKIGELVKLLQDTSRIPEDDQVLIFIQFTDLVTAVSKALGKAGI 1939

Query: 94   LD--------KDPCTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                          ++ ++  G   +     + A       GLNLQ   N +VFF     
Sbjct: 1940 RHITIIAKDRSAGKSLADFQNGTEEVKSKALILALGDVTASGLNLQ-AANHIVFFHPLIA 1998

Query: 141  LEEH------QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT-------- 186
              ++       Q + R      R+ G ++ V +Y+ +A  T++  + +R R         
Sbjct: 1999 RSQYDYESGMSQAMGR-----SRRYGQQKHVHIYHFLALKTVEVNIFERRRRECLVKRDK 2053

Query: 187  ------KSTIQDL 193
                  K+ IQD 
Sbjct: 2054 IFVSLLKNEIQDA 2066


>gi|302906263|ref|XP_003049441.1| hypothetical protein NECHADRAFT_106263 [Nectria haematococca mpVI
           77-13-4]
 gi|256730376|gb|EEU43728.1| hypothetical protein NECHADRAFT_106263 [Nectria haematococca mpVI
           77-13-4]
          Length = 750

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 27/147 (18%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             K+ A+   I+ +     +  +V   + + L  L                        I
Sbjct: 605 SSKLSAVVDNIKSSGLEEDSKSVVFTSWRTTLDMLAGILS------------------NI 646

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L     +   GL L    N++      W+    +Q I R+      + G  R V V+ 
Sbjct: 647 RVLLISINTGAVGLTLTK-ANVVHIVEPQWNPAIEEQAITRVV-----RMGQTRPVTVFK 700

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I   ++++ V++  + K+ I  L + 
Sbjct: 701 YIMNESVEQGVVKLQQRKTRIVKLSMQ 727


>gi|303312199|ref|XP_003066111.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240105773|gb|EER23966.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 2149

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 43/193 (22%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRT 93
            G V    +  W E    KI  L  +++  +  P    +++   F   +  + KA  +   
Sbjct: 1934 GEVPQSPDDSWTEFGGSKIGELVKLLQDTSRIPEDDQVLIFIQFTDLVTAVSKALGKAGI 1993

Query: 94   LD--------KDPCTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                          ++ ++  G   +     + A       GLNLQ   N +VFF     
Sbjct: 1994 RHITIIANDRSAGKSLADFQNGTEEVKSKALILALGDVTASGLNLQ-AANHIVFFHPLIA 2052

Query: 141  LEEH------QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT-------- 186
              ++       Q + R      R+ G ++ V +Y+ +A  T++  + +R R         
Sbjct: 2053 RSQYDYESGMSQAMGR-----SRRYGQQKHVHIYHFLALKTVEVNIFERRRRECLVKRDK 2107

Query: 187  ------KSTIQDL 193
                  K+ IQD 
Sbjct: 2108 IFVSLLKNEIQDA 2120


>gi|114583214|ref|XP_001153069.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 4 [Pan
           troglodytes]
          Length = 932

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 654 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 712

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 713 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 771

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 772 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 826

Query: 187 K 187
           K
Sbjct: 827 K 827


>gi|303313780|ref|XP_003066899.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106566|gb|EER24754.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1419

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   + S LA L  AF + R      D      +   +  I     H  +   GL
Sbjct: 1189 GAKSIVFSQYKSFLAILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLLHAKAHSSGL 1248

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E + Q 
Sbjct: 1249 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYQL 1302


>gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1635

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 26/141 (18%)

Query: 69   APIIVAYHFNSDLARLQKAF----------PQGRT-------LDKDPCTIQEWNEGK--- 108
            A ++V   +N  L  LQ AF            GR                Q+ N+ +   
Sbjct: 1423 AKVLVFSSWNDVLDVLQHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNQKEENP 1482

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +L        +GLNL    + ++      +     Q + R+      + G ++   V+
Sbjct: 1483 IQVLLLLVQHGANGLNLLEAQH-VILVEPLLNPAAEAQAVGRV-----HRIGQEKPTLVH 1536

Query: 169  YLIAQNTIDELVLQRLRTKST 189
              +   T++E + +  R K+T
Sbjct: 1537 RFLVTGTVEESIYKLNRNKNT 1557


>gi|322708739|gb|EFZ00316.1| SNF2 family helicase [Metarhizium anisopliae ARSEF 23]
          Length = 1144

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 45   EKHWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ-KAFPQGRTL- 94
            + H       K+  L   I+   +   II+ Y       +  S L  LQ +     RTL 
Sbjct: 861  QTHLVSTVSSKLSYLIDSIVRHQDDDKIIIFYENENVAWYLASVLDMLQVQHLIYARTLT 920

Query: 95   -DKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++    +  ++   +  +L    +    GL+++   + + F +   + +   Q I R+ 
Sbjct: 921  TERKAQYVNTFHHNPVFRVLLMDLSQAAFGLDMRE-ASRVYFINPVLNPQVEAQAIGRV- 978

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                R+   ++ VFV  L+ +++IDE++L+R + 
Sbjct: 979  ----RRISQQKPVFVETLVLKDSIDEVILERKQH 1008


>gi|327350451|gb|EGE79308.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1214

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 34/175 (19%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYH-------------FNSDLARLQKAFPQGRTL 94
                  K+  L   ++E      II+ Y                S   R+     + +T 
Sbjct: 916  VATASAKLTYLLDKVLEFQEQEKIIIFYEGNNTGFYIAEGLEILSVEFRIYANTLKTQTR 975

Query: 95   DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  +  +NE + + +L        HGL++    + +   +  WD     Q I+R   
Sbjct: 976  ---SEYLSLFNETETVRVLLMDLRQASHGLHI-ACASRVFIVNPIWDPNIESQAIKR--- 1028

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
                +    + V+V  L+ + T+++ +L+R +           K  + D  ++++
Sbjct: 1029 --AHRISQTKPVYVETLVLKGTLEDRMLRRRKQMSTTELRHAEKDPLDDQTMSSI 1081


>gi|6102878|emb|CAB59251.1| hypothetical protein [Homo sapiens]
          Length = 808

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 530 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 588

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 589 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 647

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 648 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 702

Query: 187 K 187
           K
Sbjct: 703 K 703


>gi|239607939|gb|EEQ84926.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 1214

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLDK--D 97
                  K+  L   ++E      II+ Y  N+    + +              TL     
Sbjct: 916  VATASAKLTYLLDKVLEFQEQEKIIIFYEGNNTGFYIAEGLEILGVEFRIYANTLKTQTR 975

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +NE + + +L        HGL++    + +   +  WD     Q I+R      
Sbjct: 976  SEYLSLFNETETVRVLLMDLRQASHGLHI-ACASRVFIVNPIWDPNIESQAIKR-----A 1029

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
             +    + V+V  L+ + T+++ +L+R +           K  + D  ++++
Sbjct: 1030 HRISQTKPVYVETLVLKGTLEDRMLRRRKQMSTTELRHAEKDPLDDQTMSSI 1081


>gi|261199876|ref|XP_002626339.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239594547|gb|EEQ77128.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1214

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLDK--D 97
                  K+  L   ++E      II+ Y  N+    + +              TL     
Sbjct: 916  VATASAKLTYLLDKVLEFQEQEKIIIFYEGNNTGFYIAEGLEILGVEFRIYANTLKTQTR 975

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +NE + + +L        HGL++    + +   +  WD     Q I+R      
Sbjct: 976  SEYLSLFNETETVRVLLMDLRQASHGLHI-ACASRVFIVNPIWDPNIESQAIKR-----A 1029

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLR----------TKSTIQDLLLNAL 198
             +    + V+V  L+ + T+++ +L+R +           K  + D  ++++
Sbjct: 1030 HRISQTKPVYVETLVLKGTLEDRMLRRRKQMSTAELRHAEKDPLDDQTMSSI 1081


>gi|322693650|gb|EFY85503.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1355

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 33/186 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
              Y +F  +   +++   ++  +  +K                           ++ L  
Sbjct: 1097 AIYSEFNADKLAEIKNVELDGPSFTTKVDTL-----------------------VRHLLW 1133

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPA 117
            + E    A  IV   +   L  L+ AF + R     +D          +  + +   H  
Sbjct: 1134 LRESDPGAKSIVFSQYRDFLHILRNAFRRFRIGHASIDDVNGIASFKEDPAVEVFLLHAR 1193

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLNL    + +       +     Q I R+      + G +    V+  +   T++
Sbjct: 1194 AHSSGLNLVNASH-VFLCEPLLNTALELQAIARVD-----RIGQQHETTVWLYLVSGTVE 1247

Query: 178  ELVLQR 183
            E +   
Sbjct: 1248 ESIYNL 1253


>gi|196035256|ref|ZP_03102662.1| helicase domain protein [Bacillus cereus W]
 gi|195992320|gb|EDX56282.1| helicase domain protein [Bacillus cereus W]
          Length = 1063

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 82/197 (41%), Gaps = 22/197 (11%)

Query: 5   HKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K +++L   +   +  E         + +Q A     Y  EK ++E+ +    A  ++ 
Sbjct: 426 EKLEKQLEKSIDVIDTKELKKELIVLKELIQQAENIKLYVVEKKYQELEETLFGASGLL- 484

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLF 113
              +   I++       L+ L++   +              ++    ++ +   +  ++ 
Sbjct: 485 --NHDEKILIFTESVDTLSYLEEKLLKRVPKIAKIIGSLSMEQRRKQVEMFRN-ECQIMI 541

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A   + G  +NLQ+  N ++ + + W+  + +Q + RI      + G K  VFV+ L+AQ
Sbjct: 542 A-TDAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI-----HRIGQKNEVFVFNLVAQ 594

Query: 174 NTIDELVLQRLRTKSTI 190
           NT +  V+ +L  K  +
Sbjct: 595 NTREGSVMTKLLDKMEL 611


>gi|195401136|ref|XP_002059170.1| GJ16178 [Drosophila virilis]
 gi|194156044|gb|EDW71228.1| GJ16178 [Drosophila virilis]
          Length = 714

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 19/153 (12%)

Query: 51  VHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
             + K +A+   ++     PI  I+  H    +  +     + R            D   
Sbjct: 492 TAEVKTRAVCAYLKSLVKEPIKFIIFAHHRVMMDAISDCLNELRISFIRIDGQTRSDLRA 551

Query: 99  CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  + +            SC  G+ L     ++VF  L W+     Q       +R  
Sbjct: 552 AYVDTFQKKSSCKAAVLSLKSCNAGITLT-AAEMIVFAELDWNPSTLAQA-----ESRAH 605

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G  + V   YL+A  T D+ +   LR K  +
Sbjct: 606 RIGQTKPVVCRYLMANQTADDTIWNMLRNKQEV 638


>gi|307580244|gb|ADN64213.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 330

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 2/53 (3%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVH 52
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VH
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVH 309


>gi|254481757|ref|ZP_05095000.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
 gi|214037886|gb|EEB78550.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
          Length = 1180

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 24/151 (15%)

Query: 51  VHDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQG---------------R 92
             D K   L+ II++  A P   ++V   F   L+ L +   Q                R
Sbjct: 656 DDDPKYDRLKKIIQEKQALPNRRLMVFSTFRHTLSYLSERLTQDGYEIGLVHGGVPDSER 715

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            L ++   +   +   + +L         GL+ Q+  + +V + L W+  + +Q I RI 
Sbjct: 716 VLLRNRFKLDSNDSDSLDVLLFS-EVGCEGLDYQF-CDAMVNYDLPWNPMKIEQRIGRID 773

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
              Q+       V +Y LI   T+D  +  R
Sbjct: 774 RNGQK----SEKVVIYNLITPGTVDAEIYDR 800


>gi|84616885|emb|CAJ13779.1| virulence associated protein [Desulfococcus multivorans]
          Length = 965

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 49  KEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           +   D K +AL   I      E      +++   F     ++ K F + R          
Sbjct: 476 QAGPDAKAEALIEWIYKLQAEENEPDLKVLIFTEFVPT-QQMLKEFLEARGISVVTLNGS 534

Query: 93  -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +++       +   K   +     + G GLNLQ+  ++++ + + W+    +Q I R+
Sbjct: 535 MAMEERGAAQDAF--RKSHRVLVSTDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRV 591

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  + V     + +++++  V + L  K
Sbjct: 592 D-----RIGQPKTVQAINFVFEDSVEFRVREVLEQK 622


>gi|62327174|ref|YP_223931.1| helicase [Phage phiJL001]
 gi|50059492|gb|AAT69464.1| helicase [Phage phiJL001]
          Length = 513

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 29/215 (13%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASK----TVKCLQLANGAVYYDEEKH---WKEVH 52
           K Y + + EL   +   G +IE   +A       ++  Q+  G + + E+ +    + VH
Sbjct: 303 KMYEQIREELMAMVRADGSDIETLLTAELPIVNVLRLYQITAGYLPFQEDVNGEPVERVH 362

Query: 53  DEKIK-----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-------DKDPCT 100
             K       AL  +  + +    +V   F  D+  L  A  +           D+    
Sbjct: 363 TFKENPRLETALAELRRQTDKT--VVWCRFTRDIDLLTAALGKFAVRFDGSISEDERAQN 420

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            QEW +G    L     +   G  L     +L +++    L        R    R  +  
Sbjct: 421 KQEWLKGDAQYLVPQIQAMARGHTLNIAPYVL-YYTNDARLRL-----RRQSEDRTHRGK 474

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +V    ++A +T+DE  ++ LR K  + + ++
Sbjct: 475 MNFSVLYGDMLASDTVDEKRVKSLRKKLAVAETIM 509


>gi|146329165|ref|YP_001209106.1| DEAD helicase domain-containing protein VrlO [Dichelobacter nodosus
           VCS1703A]
 gi|2317808|gb|AAC33384.1| putative DEAH ATP-dependent helicase [Dichelobacter nodosus]
 gi|146232635|gb|ABQ13613.1| DEAD helicase domain protein VrlO [Dichelobacter nodosus VCS1703A]
          Length = 965

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 49  KEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           +   D K +AL   I      E      +++   F     ++ K F + R          
Sbjct: 476 QAGPDAKAEALIEWIYKLQAEENEPDLKVLIFTEFVPT-QQMLKEFLEARGISVVTLNGS 534

Query: 93  -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +++       +   K   +     + G GLNLQ+  ++++ + + W+    +Q I R+
Sbjct: 535 MAMEERGAAQDAF--RKSHRVLVSTDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRV 591

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G  + V     + +++++  V + L  K
Sbjct: 592 D-----RIGQPKTVQAINFVFEDSVEFRVREVLEQK 622


>gi|93005784|ref|YP_580221.1| SNF2-related [Psychrobacter cryohalolentis K5]
 gi|92393462|gb|ABE74737.1| SNF2-related [Psychrobacter cryohalolentis K5]
          Length = 1075

 Score = 61.9 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 29/161 (18%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNS---DLARL--QKAFPQGRTLDKDPCT---------- 100
            I  LE I  K     +I+   F +    L RL  ++      T++ D  T          
Sbjct: 908  INTLETI--KQKNEKVIIFTEFRAIQVFLKRLLLERFGLNVTTVNGDSNTNSRVGLTRQG 965

Query: 101  -IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I ++ E     ++     + G G+N+Q   N ++ ++  W+  +  Q  +R       +
Sbjct: 966  IIDKFQETNGFNVIILSTVAVGFGVNIQK-ANHVIHYTRSWNPAKEDQATDR-----AYR 1019

Query: 159  AGFKRAVFVYY-LIAQN---TIDELVLQRLRTKSTIQDLLL 195
             G  + V+VYY  IA +   T +  + + L +K ++ D +L
Sbjct: 1020 IGQDKEVYVYYPSIAADDFETFEIKLDKLLSSKRSLADDML 1060


>gi|121707834|ref|XP_001271954.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119400102|gb|EAW10528.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 1190

 Score = 61.9 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +NE +I +         HGL++    + + F +  W      Q I+R       + G  
Sbjct: 948  RYNE-EIRVFLMDLNQASHGLHI-ANASRVFFVNPVWQPNIESQAIKR-----AHRIGQT 1000

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R V+V  L+ ++T+++ +L+R   K+     +  A K
Sbjct: 1001 RPVYVETLVLKDTLEDRMLKR--RKAMSDQEMQEAEK 1035


>gi|297484680|ref|XP_002694499.1| PREDICTED: E1A binding protein p400 [Bos taurus]
 gi|296478660|gb|DAA20775.1| E1A binding protein p400 [Bos taurus]
          Length = 3095

 Score = 61.9 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
             +    K++AL ++++K  +    +++       L  L+              +    ++
Sbjct: 1852 VQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQ 1911

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++ +N + +I        S   G++L    + +VF+    +     +  E      
Sbjct: 1912 RQELMRSFNRDRRIFCALLSTHSRATGVSLVE-ADAVVFYDHDLNPVMDAKAQEWCD--- 1967

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G ++ V +Y L++ N+I+E +L+
Sbjct: 1968 --RIGRRKDVHIYRLVSGNSIEEKLLK 1992


>gi|190344733|gb|EDK36473.2| hypothetical protein PGUG_00571 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1263

 Score = 61.9 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGLN+    + + F S  W      Q I+R       + G  +AV V  LI +NT++E
Sbjct: 1065 AAHGLNITAATH-VYFTSPVWSRSVEAQAIKR-----AHRIGQTKAVRVETLILKNTLEE 1118

Query: 179  LVLQRL----RTKSTIQDLLLN 196
             + ++           Q  +++
Sbjct: 1119 EIYRKRSQETEENDREQKYVID 1140


>gi|22331785|ref|NP_680129.1| SNF2 domain-containing protein / helicase domain-containing protein /
            F-box family protein [Arabidopsis thaliana]
 gi|75181828|sp|Q9M1I1|FB304_ARATH RecName: Full=F-box protein At3g54460
 gi|7258349|emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana]
 gi|20259494|gb|AAM13867.1| unknown protein [Arabidopsis thaliana]
 gi|28393845|gb|AAO42330.1| unknown protein [Arabidopsis thaliana]
 gi|110742559|dbj|BAE99194.1| RING finger -like protein [Arabidopsis thaliana]
          Length = 1378

 Score = 61.9 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 19/139 (13%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
             +++   F   +  +++                   +K        N+     L     S
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMD-GS 1253

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  + +      WD    +Q+I R       + G KR +FV  L  + TI+E
Sbjct: 1254 GALGLDLSFVTH-VFLMEPIWDKSLEEQVISR-----AHRMGAKRPIFVETLTMRGTIEE 1307

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +++ L       D LL+ 
Sbjct: 1308 QMMRFLEDAEK-SDRLLSG 1325


>gi|159027513|emb|CAO89477.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1171

 Score = 61.9 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 24/184 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQ 85
           +   K   LAN      +++ W+E     ++    + +       I+V       L  L+
Sbjct: 465 ALLKKLEDLANSVRRSGKDRKWEE-FSHLLQDEAEMFDAGGYRRKIVVFTEHRDTLNYLK 523

Query: 86  KAF------PQGRT-------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +        P+           +      + +  +  + +L A   + G G+NLQ   ++
Sbjct: 524 ERISTLLGNPEAVVTIHGGMGREDRKKAEEGFKQDVGVQVLLA-TDAAGEGINLQR-AHL 581

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STI 190
           +V + L W+    +Q   RI      + G      ++ L+A  T +  V + L  K    
Sbjct: 582 MVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAHETREGDVYRTLLEKLEAE 636

Query: 191 QDLL 194
           Q  L
Sbjct: 637 QKAL 640


>gi|194674605|ref|XP_878269.3| PREDICTED: E1A binding protein p400 isoform 5 [Bos taurus]
          Length = 2680

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
             +    K++AL ++++K  +    +++       L  L+              +    ++
Sbjct: 1437 VQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQ 1496

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++ +N + +I        S   G++L    + +VF+    +     +  E      
Sbjct: 1497 RQELMRSFNRDRRIFCALLSTHSRATGVSLVE-ADAVVFYDHDLNPVMDAKAQEWCD--- 1552

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G ++ V +Y L++ N+I+E +L+
Sbjct: 1553 --RIGRRKDVHIYRLVSGNSIEEKLLK 1577


>gi|189465857|ref|ZP_03014642.1| hypothetical protein BACINT_02219 [Bacteroides intestinalis DSM
           17393]
 gi|189434121|gb|EDV03106.1| hypothetical protein BACINT_02219 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 16/185 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +  L  ++ G  I     A    K  QL++G V  +       +  +K KA E + +
Sbjct: 229 KSMRDNLMVEIDGNAILGDTPAKLLTKLHQLSSGTVIAENG---LHLTFDKSKA-EFVRK 284

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +     + + Y + S+   LQ  F   +     P     +      +  +       G+ 
Sbjct: 285 QFAGKKVALFYVYQSEAELLQSVF---QNWTDSPEV---FQLSTDKVFISQVRRAREGVR 338

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + L+FF+L +    ++Q   R+    +          VY+L +   I+  +L  +
Sbjct: 339 L-DTADALIFFNLEFSFLSYEQGRNRLVSKER-----TAPADVYFLCSDCGIESKILDAV 392

Query: 185 RTKST 189
             K  
Sbjct: 393 HGKQD 397


>gi|119193294|ref|XP_001247253.1| hypothetical protein CIMG_01024 [Coccidioides immitis RS]
          Length = 2097

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 43/193 (22%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRT 93
            G V    +  W E    KI  L  +++  +  P    +++   F   +  + KA  +   
Sbjct: 1882 GEVPQSSDDSWAEFGGSKIGELVKLLQDTSRIPEDDQVLIFIQFTDLVTAVSKALGKAGI 1941

Query: 94   LD--------KDPCTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                          ++ ++  G   +     + A       GLNLQ   N +VFF     
Sbjct: 1942 RHITIISNDRSAGKSLADFQNGTEEVKSKALILALGDVTASGLNLQ-AANHIVFFHPLIA 2000

Query: 141  LEEH------QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT-------- 186
              ++       Q + R      R+ G ++ V +Y+ +A  T++  + +R R         
Sbjct: 2001 RSQYDYESGMSQAMGR-----SRRYGQQKHVHIYHFLALKTVEVNIFERRRRECLVKRDK 2055

Query: 187  ------KSTIQDL 193
                  K+ IQD 
Sbjct: 2056 IFVSLLKNEIQDA 2068


>gi|6693793|gb|AAF24985.1|AF088884_1 HepA-related protein Harp [Mus musculus]
          Length = 910

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
            +  +      ++ +  +++       +V  H    L  + K               R  
Sbjct: 661 NRTAEAKIPCVVEYILDLLDS-GREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSRPT 719

Query: 95  DKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  Q +   K   +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 720 RARELKCQRFQLSKGHTVALLSIPAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 776

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 777 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 807


>gi|194766057|ref|XP_001965141.1| GF23602 [Drosophila ananassae]
 gi|190617751|gb|EDV33275.1| GF23602 [Drosophila ananassae]
          Length = 752

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE--WNEG 107
           L+ ++++      I+  H    +  +     +         G+T         +      
Sbjct: 525 LKTLVKE--KMKFIIFAHHRVMMDAISDCLAELKVHYIRIDGQTRSDLRADFVDTFQKNS 582

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +C  G+ L     +++F  L W+     Q       +R  + G  +AV  
Sbjct: 583 SCKVALLSLKACNSGITLT-AAEMILFAELDWNPSTLAQA-----ESRAHRIGQTKAVIC 636

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A  T D+ +   L+ K  +
Sbjct: 637 RYLMAHGTADDTIWAMLKNKQEV 659


>gi|196044225|ref|ZP_03111461.1| helicase domain protein [Bacillus cereus 03BB108]
 gi|196024864|gb|EDX63535.1| helicase domain protein [Bacillus cereus 03BB108]
          Length = 1066

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 23/155 (14%)

Query: 51  VHDEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQKAFPQGRTL----------D 95
           V ++K + LE  +  A     +   I++       L+ L++   +              +
Sbjct: 465 VVEKKYQELEETLFGASGLLNHDEKILIFTESVDTLSYLEEKLLKRVPKIAKIIGSLSME 524

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    ++ +   +  ++ A   + G  +NLQ+  N ++ + + W+  + +Q + RI    
Sbjct: 525 QRRKQVEMFRN-ECQIMIA-TDAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI---- 577

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G K  VFV+ L+AQNT +  V+ +L  K  +
Sbjct: 578 -HRIGQKNEVFVFNLVAQNTREGSVMTKLLDKMEL 611


>gi|297607123|ref|NP_001059497.2| Os07g0434500 [Oryza sativa Japonica Group]
 gi|255677716|dbj|BAF21411.2| Os07g0434500 [Oryza sativa Japonica Group]
          Length = 909

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 661 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNL----TDATVDSLIESIIIKDGVK 716

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 717 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 776

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 777 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 830

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 831 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 863


>gi|194337162|ref|YP_002018956.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309639|gb|ACF44339.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 927

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFP-QGRTLDKDP------CTIQEW 104
           +  L  +  +     I+V   +   +      + + FP QG  + +           + +
Sbjct: 506 LDGLGTLWRQNPDEKIVVFATYLGSVDLIAREINQTFPGQGVVILRGGDHGAKVAAERRF 565

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +    A+   G+NLQ+   IL  F L W+  + +Q I RI      + G    
Sbjct: 566 RQKDGPRVLVCTAAGREGINLQFS-RILFNFDLPWNPMDVEQRIGRI-----HRYGQNYT 619

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
             VY L+  +TI+  +   L  K
Sbjct: 620 AQVYNLVLSDTIEGRIFLMLDEK 642


>gi|307105253|gb|EFN53503.1| hypothetical protein CHLNCDRAFT_136836 [Chlorella variabilis]
          Length = 445

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTL---------------------DKDPCTIQEWNE 106
              ++V  H  + L  LQ A  + +                       ++    +  +  
Sbjct: 165 GVKVLVFAHHQAVLDGLQAALREEQVAHVRIDGQASAPLAAAASSVLNERRKAAVDTFQR 224

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +          + G G+ L      +VF  L+W+  +  Q  +R       + G +R +
Sbjct: 225 DRACRAALLSITAAGTGITLTE-AQAVVFVELYWNPGQLVQAEDR-----AHRLGQRRVL 278

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            V+YL+A  T D+ + +  + K
Sbjct: 279 EVHYLVAPGTADDTIWRLCQHK 300


>gi|224071798|ref|XP_002195016.1| PREDICTED: similar to E1A binding protein p400 [Taeniopygia guttata]
          Length = 2991

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +A    +  QL    +    +    +    K++AL V+++K  +    +++       L 
Sbjct: 1746 AAPHLHQLQQLTTPHLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMILMLD 1805

Query: 83   RLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
             L+              +    ++    ++ +N  K I        S   G+NL    + 
Sbjct: 1806 ILELFLNFHFLTFVRIDEYANQEQRQELMKIFNRDKRIFCAILSSHSRSTGVNLVE-ADT 1864

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +     +  E        + G  + + +Y L++ N+++E +L+
Sbjct: 1865 VVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSVEEKLLK 1910


>gi|149634328|ref|XP_001510861.1| PREDICTED: similar to E1A binding protein p400 [Ornithorhynchus
            anatinus]
          Length = 3116

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 19/167 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
              +  Q+    +    +    +    K++AL V+++K  +    +++       L  L+ 
Sbjct: 1838 LQQLRQITALRLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMMLMLDILEM 1897

Query: 87   ----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFF 135
                         +    ++    ++ +N  K I        S   G+NL    + +VF+
Sbjct: 1898 FLNFHYLTYIRVDENANSEQRLELMKSFNRDKRIFCAIISTHSRSTGVNLVE-ADTVVFY 1956

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1957 DNDLNPVMDAKAQEWCE-----RIGRCKDIHIYRLVSGNSIEEKLLK 1998


>gi|297669376|ref|XP_002812875.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 1 [Pongo abelii]
 gi|297669378|ref|XP_002812876.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 2 [Pongo abelii]
 gi|297669380|ref|XP_002812877.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 3 [Pongo abelii]
          Length = 954

 Score = 61.5 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 676 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 734

Query: 78  NSDLARLQKAF---------PQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 735 KVVLDAITQELGRKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 793

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 848

Query: 187 K 187
           K
Sbjct: 849 K 849


>gi|50548151|ref|XP_501545.1| YALI0C07150p [Yarrowia lipolytica]
 gi|49647412|emb|CAG81848.1| YALI0C07150p [Yarrowia lipolytica]
          Length = 1756

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPL 111
            D  IK ++++  +A    I++   +   L  L  A  + +    +P T+  +    ++  
Sbjct: 1578 DHVIKYIKMLTHRAPGTQIVIFSQWAEILTLLASALTENKIAYAEPKTLMSFLQSEEVTC 1637

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
               +      GL L    + ++      +     Q I RI      + G  +   V    
Sbjct: 1638 FLLNAKFQSTGLTLVNATH-VILCEPILNAALEAQAISRI-----HRMGQTQTTHVTIFT 1691

Query: 172  AQNTIDELVLQRLRTKS 188
              +T++E VL+    K 
Sbjct: 1692 MADTVEEEVLRLAINKR 1708


>gi|126661454|ref|ZP_01732511.1| putative DEAD/H helicase [Cyanothece sp. CCY0110]
 gi|126617267|gb|EAZ88079.1| putative DEAD/H helicase [Cyanothece sp. CCY0110]
          Length = 924

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 30/176 (17%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ-------------------KAFPQG 91
           D K+ A   I+  E       I  + +   +  ++                   + + QG
Sbjct: 745 DTKLSAYIEILRHELTQRESAITFFQYTDTMDYVRDTLVQLYGNQVACYSGRGGELYEQG 804

Query: 92  R-TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +  + K     + + EG I +L     S   GLNLQ  G +++ +S+ W+  + +Q I R
Sbjct: 805 QWRIVKKEQIKRLFKEGVIKVLLC-TKSASEGLNLQTCG-VILMYSMPWNPMQVEQQIGR 862

Query: 151 IGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +      + G       ++      T++  V +RLR +    + ++  L+     V
Sbjct: 863 LD-----RIGQVYPTIRIHNFYYDGTVEAKVYRRLRDRIQAFETVVGNLQPILAQV 913


>gi|328875307|gb|EGG23672.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1175

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              K +   K+  L   +++     I +    ++ L  LQ      +   +    +    +
Sbjct: 957  QPKLIDSSKLDYLIKRLQELEKKGIKLMAMKHAKLNFLQY-HSNMKLKKRAMAILSFQTD 1015

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +   +  +     +G+NL    +I+    L        +  ER  + R  + G    V 
Sbjct: 1016 SQQHFIVMNTDLAAYGINLTAANHIIFVDQLT------SEGKERQAIKRAHRIGQLNPVS 1069

Query: 167  VYYLIAQNTIDELVLQRLRT 186
            V  LI  NTI++++L  L  
Sbjct: 1070 VEKLIIPNTIEQMILSTLNH 1089


>gi|312213090|emb|CBX93172.1| similar to SNF2 family helicase [Leptosphaeria maculans]
          Length = 1210

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 45   EKHWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLD 95
            E         K+  L   I++  +   IIV Y  ++    + +             RTL+
Sbjct: 933  ETKIMGTTSAKLTYLLDKIVKHQSEEKIIVFYDGDNAAYYIAQGLEVLHINHRIYARTLE 992

Query: 96   --KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    ++ +NE   + +L    A    GLNL     +L+  +         Q I+R  
Sbjct: 993  NTKRSEYVRLFNEDPTVRVLLIDVACGALGLNLNVASVVLI-VNPINRPFLEAQAIKR-- 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 + G  R V V  L+ +NTI+  +  R + 
Sbjct: 1050 ---AHRIGQTREVLVETLVLENTIEHAIFDRAKK 1080


>gi|126433436|ref|YP_001069127.1| helicase domain-containing protein [Mycobacterium sp. JLS]
 gi|126233236|gb|ABN96636.1| helicase domain protein [Mycobacterium sp. JLS]
          Length = 1136

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +Q      R  ++   T +        +L A   + G GLNLQ   +++V + L W+   
Sbjct: 523 VQAIHGGVRRRERRMITEEFTKNRDCQILLA-TDAAGEGLNLQ-AAHLMVNYDLPWNPNR 580

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +Q   RI      + G +    ++ L+A NT +  V +RL  K   Q
Sbjct: 581 IEQRFGRI-----HRIGQEEVCRLWNLVASNTREGAVFERLLQKIEEQ 623


>gi|83765202|dbj|BAE55345.1| unnamed protein product [Aspergillus oryzae]
          Length = 1003

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 51  VHDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
            +  K++AL   +         I+   +   L  + K     R             +   
Sbjct: 831 GYSSKMRALISDVQRDIRTTKSIIFSCWTRTLDLIAKHLKASRIEFERIDGKTSTSQRQK 890

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  ++    +P+L     +   GLNLQ   N +      W+     Q I R       +
Sbjct: 891 ILDRFDGTRTVPVLIMTTGTGAFGLNLQ-SVNRVFIVEPQWNPSVESQAIAR-----AIR 944

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G ++ V V     +N+I+E +  +   K  I  +
Sbjct: 945 LGQEQQVLVTRYRVENSIEEAMCSQQTHKLKISQM 979


>gi|317038672|ref|XP_001401946.2| SNF2 family helicase [Aspergillus niger CBS 513.88]
          Length = 1203

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 49   KEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTLDKD-- 97
                  K+  L   + + +    II+ Y  N+    + +              TL     
Sbjct: 884  VATASAKLTYLLDQVSELHKTEKIIIFYDNNNAAFWIAEGLELLGVDFRIYASTLKPTMR 943

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + E + + +L        HGL++     + +  +  W      Q I+R      
Sbjct: 944  AEYLALFRESEEVRVLLMDLRQASHGLHIANASRVFI-VNPIWQPNVESQAIKR-----A 997

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  R VFV  L+ ++T+++ +L+R   K+     +
Sbjct: 998  HRIGQTRPVFVETLVLKDTLEDKMLKR--RKAMTDSEI 1033


>gi|134074551|emb|CAK38844.1| unnamed protein product [Aspergillus niger]
          Length = 1237

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 49   KEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTLDKD-- 97
                  K+  L   + + +    II+ Y  N+    + +              TL     
Sbjct: 918  VATASAKLTYLLDQVSELHKTEKIIIFYDNNNAAFWIAEGLELLGVDFRIYASTLKPTMR 977

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + E + + +L        HGL++     + +  +  W      Q I+R      
Sbjct: 978  AEYLALFRESEEVRVLLMDLRQASHGLHIANASRVFI-VNPIWQPNVESQAIKR-----A 1031

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  R VFV  L+ ++T+++ +L+R   K+     +
Sbjct: 1032 HRIGQTRPVFVETLVLKDTLEDKMLKR--RKAMTDSEI 1067


>gi|299744877|ref|XP_001831325.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
 gi|298406330|gb|EAU90488.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
          Length = 2184

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 25/187 (13%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-------EKIKALEVIIEKA--N 67
             +  E   +A    KC    N  V   E     E  D        K++ +  +I+     
Sbjct: 1983 ADKEECVYAAIGKCKCAARVNNIVKATELGEDDEERDGGGKHFGRKLEKIVDLIKNRIPK 2042

Query: 68   AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEG-KIPLLFAHPA 117
               +++   F   + ++ +            +G   DK    ++ +  G +  +L  +  
Sbjct: 2043 DDRVLLFVQFPDLIQKVGECLKYHGIGYLQIKGGVRDKTNS-LENFKLGSEQRVLLLNVM 2101

Query: 118  -SCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G NL    N ++F S       E ++   E   V R  + G  + V ++  I +N
Sbjct: 2102 DESASGANLTD-ANHVIFLSPLLTPSNEVYE-ANETQAVGRVVRFGQTKHVHIWKFITKN 2159

Query: 175  TIDELVL 181
            TIDE + 
Sbjct: 2160 TIDEEIY 2166


>gi|196250353|ref|ZP_03149046.1| helicase domain protein [Geobacillus sp. G11MC16]
 gi|196210242|gb|EDY05008.1| helicase domain protein [Geobacillus sp. G11MC16]
          Length = 1057

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAH 115
           A    +++       L  L++              G ++D+    ++++    + ++ A 
Sbjct: 476 AQGEKLLIFTESKDTLYYLERKLLAHVPEVAKIVGGFSMDQRRAEVEKFRN-HVQIMLA- 533

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G  +NLQ+  N ++ + + W+    +Q + RI      + G K  VFV+ L+A NT
Sbjct: 534 TDAGGESINLQF-CNQMINYDIPWNPNRLEQRMGRI-----HRIGQKNEVFVFNLVAGNT 587

Query: 176 IDELVLQRLRTKST 189
            +  VL RL  K  
Sbjct: 588 REGDVLIRLLEKME 601


>gi|224147596|ref|XP_002336506.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
 gi|222835795|gb|EEE74230.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
          Length = 387

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 37  NGAVYYDEEKHWKEVHD----EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ 90
           N AV  D   +  E  D     K K    I+   K+    ++V   + + L  L++   +
Sbjct: 126 NSAVTDDMMDNLLETLDVRDGAKAKFFLNILSLCKSAGEKLLVFSQYLTPLKFLERLVMK 185

Query: 91  GR----------TLDKDPCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +             +     +EW      N     + F    +CG G++L  G + ++ 
Sbjct: 186 VKGWILGKDIFVISGESSSDHREWSMDRFNNSIDAKVFFGSIKACGEGISL-VGASRIII 244

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +    +Q I R       + G  + V+ Y L+A ++ +E        K  I  + 
Sbjct: 245 LDVHLNPSVTRQAIGR-----AFRPGQTKKVYAYRLVAADSPEEEDHTTCFRKEAIAKMW 299

Query: 195 LN 196
             
Sbjct: 300 FE 301


>gi|221068880|ref|ZP_03544985.1| helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713903|gb|EED69271.1| helicase domain protein [Comamonas testosteroni KF-1]
          Length = 929

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
           +  L  +  +     I++   +   +  + +   Q           G          +++
Sbjct: 510 LDGLGHLWRQNANEKIVIFATYLGTVDLIAREIEQAYPGQGVVVLRGGDHGAKLAAERKF 569

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +    A+   GLNLQ+   IL  F L W+  + +Q I RI      + G +  
Sbjct: 570 RLKDGPRVLVCTAAGREGLNLQF-ARILFNFDLPWNPMDMEQRIGRI-----HRYGQRDT 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
             VY L+  +TI+  +   L  K
Sbjct: 624 AQVYNLVLSDTIEGRIFLLLDEK 646


>gi|169608868|ref|XP_001797853.1| hypothetical protein SNOG_07519 [Phaeosphaeria nodorum SN15]
 gi|111063865|gb|EAT84985.1| hypothetical protein SNOG_07519 [Phaeosphaeria nodorum SN15]
          Length = 1274

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTLDK- 96
                    K+  L   +    A   II+ Y  ++    + +             RTL+  
Sbjct: 990  RIIATTSAKLTYLLDKVVAHQATEKIIIFYDGDNAAFYIAQCLEMLYINHRIYARTLNNV 1049

Query: 97   -DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +  +N +  + +L    A    GLNL    +I++  +         Q I+R    
Sbjct: 1050 ARSEYVALFNSDPDVRVLLIDVACGALGLNL-NAASIVLIVNPINRPSIEAQAIKR---- 1104

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               + G  + V V  L+ +NTI+  + +  +  S  Q
Sbjct: 1105 -AHRIGQDKKVTVETLVLENTIEHAIFKHAKKMSRAQ 1140


>gi|24216735|ref|NP_714216.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24198088|gb|AAN51234.1|AE011558_10 ATP-dependent RNA helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 948

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 24/173 (13%)

Query: 45  EKHWKEVHDE-KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------D 95
            K  KE     K+K   + ++K   +  I+   F +    L       +          D
Sbjct: 456 GKKIKEDKKSIKLKETILKLQKEGHSKFIIFTQFRTTQDFLASVLSDFQVTLFHGSLSAD 515

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I E+   K  +L     + G G NLQ+  N+L  + L W   + +Q I RI    
Sbjct: 516 AKEKAIVEFKT-KTEILIC-TEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI---- 568

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-------QDLLLNALKKE 201
             + G K  VF++   +++T+ E +L+ L  K  +        D LL A++ E
Sbjct: 569 -HRFGQKDNVFIFNFASKDTVAERILEVLTNKIRLFEESIGSSDELLGAIEDE 620


>gi|331284125|ref|NP_056224.3| E1A-binding protein p400 [Homo sapiens]
          Length = 3123

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|317373565|sp|Q96L91|EP400_HUMAN RecName: Full=E1A-binding protein p400; AltName: Full=CAG repeat
            protein 32; AltName: Full=Domino homolog; Short=hDomino;
            AltName: Full=Trinucleotide repeat-containing gene 12
            protein; AltName: Full=p400 kDa SWI2/SNF2-related protein
          Length = 3159

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1868 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1927

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1928 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1986

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1987 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 2033


>gi|297263902|ref|XP_001105690.2| PREDICTED: e1A-binding protein p400-like isoform 2 [Macaca mulatta]
          Length = 3268

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1973 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 2032

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 2033 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 2091

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 2092 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 2138


>gi|168270576|dbj|BAG10081.1| E1A binding protein p400 [synthetic construct]
          Length = 3043

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1751 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1810

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1811 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1869

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1870 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1916


>gi|119618942|gb|EAW98536.1| E1A binding protein p400, isoform CRA_c [Homo sapiens]
          Length = 2066

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|119618940|gb|EAW98534.1| E1A binding protein p400, isoform CRA_a [Homo sapiens]
          Length = 3081

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1785 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1844

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1845 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1903

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1904 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1950


>gi|15529034|gb|AAK97789.1| p400 SWI2/SNF2-related protein [Homo sapiens]
          Length = 3124

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|45659042|ref|YP_003128.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602288|gb|AAS71765.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 948

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 24/173 (13%)

Query: 45  EKHWKEVHDE-KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------D 95
            K  KE     K+K   + ++K   +  I+   F +    L       +          D
Sbjct: 456 GKKIKEDKKSIKLKETILKLQKEGHSKFIIFTQFRTTQDFLASVLSDFQVTLFHGSLSAD 515

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I E+   K  +L     + G G NLQ+  N+L  + L W   + +Q I RI    
Sbjct: 516 AKEKAIVEFKT-KTEILIC-TEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI---- 568

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-------QDLLLNALKKE 201
             + G K  VF++   +++T+ E +L+ L  K  +        D LL A++ E
Sbjct: 569 -HRFGQKDNVFIFNFASKDTVAERILEVLTNKIRLFEESIGSSDELLGAIEDE 620


>gi|225021083|ref|ZP_03710275.1| hypothetical protein CORMATOL_01095 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946223|gb|EEG27432.1| hypothetical protein CORMATOL_01095 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1167

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 31/200 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYD-----EEKHWKEVHDEKIKALEVIIEK-- 65
            +L+ +  E  + A+      QL +     D       +   +  D K   L  I+E   
Sbjct: 430 AELEQQVDEVVDRATAAQDQAQLTHEITVLDGLIATARRVRNQDEDRKWVELRKILESKV 489

Query: 66  -----ANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEG 107
                     II+       L  L+                  G          +++   
Sbjct: 490 LTGTNGENRKIIIFTEHRDTLTYLEDKITTQLGSTDAVVTIHGGTPRHLRQAIREQFTHD 549

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              L+     + G GLNLQ   +++V + L W+    +Q   RI      + G +    +
Sbjct: 550 PRTLVLLATDAAGEGLNLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQREVCHL 603

Query: 168 YYLIAQNTIDELVLQRLRTK 187
           + L+A NT +  V  RL  K
Sbjct: 604 WNLVAHNTREGDVFNRLLEK 623


>gi|239610143|gb|EEQ87130.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Ajellomyces dermatitidis ER-3]
          Length = 1385

 Score = 61.5 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ +   W+  +  Q        R  + G K  V +  LI  N+++E +L+  + K  + 
Sbjct: 898 VIIYDSDWNPHQDLQA-----QDRAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMD 952

Query: 192 DLLLNALK 199
             ++ A K
Sbjct: 953 GKVIQAGK 960


>gi|171679323|ref|XP_001904608.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939287|emb|CAP64515.1| unnamed protein product [Podospora anserina S mat+]
          Length = 997

 Score = 61.5 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---- 93
           G   +   K   +   + +  L+ I     +   I+   +   L  + +     R     
Sbjct: 810 GNTSHTTPKIPTQYPSKLLALLKDI-SMHLSQKSIIFSSWKKTLNLISELLTSYRIPFYC 868

Query: 94  ------LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 L +    ++++       +L     +   GLNL    + +      W+     Q
Sbjct: 869 IHGSLSLGERIRILKDFRSSSGANVLLMTLGTGAVGLNLAV-ASRIYLMEPQWNPSVELQ 927

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQD 192
            I R       + G    V +   I ++TI++  VL R   K  +  
Sbjct: 928 AIGR-----ALRLGQTEQVAIVRYIVKHTIEDSNVLSRQEAKLQLAS 969


>gi|171681303|ref|XP_001905595.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940610|emb|CAP65838.1| unnamed protein product [Podospora anserina S mat+]
          Length = 213

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 15/119 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           P IV   +   L  ++    +           R+ +    ++ ++    +P+L     + 
Sbjct: 16  PSIVFSFWMKSLDLVENLLKKHDIAFRRVDGSRSKNDRRASLHDFRTKDVPVLLMTFGTG 75

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             GLN       +      W+     Q I R+      + G  R V V   + + +I+E
Sbjct: 76  SMGLNDLNVARRVHILEPQWNPSVENQAIGRVS-----RFGQTREVTVIRYVMKKSIEE 129


>gi|73998078|ref|XP_859390.1| PREDICTED: similar to helicase, lymphoid-specific isoform 7 [Canis
           familiaris]
          Length = 812

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 44/149 (29%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-E 106
            L  +  KA    +++       L  L                  +  +    +  +N +
Sbjct: 606 MLPEL--KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTD 663

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +                            + +   Q  +R       + G  + V 
Sbjct: 664 PDVFIFL--------------------------NPQSDLQAQDRC-----HRIGQTKPVV 692

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+  NTID+ +++R   K  ++ L++
Sbjct: 693 VYRLVTANTIDQKIVERAAAKRKLEKLII 721


>gi|308804708|ref|XP_003079666.1| SNF2 domain-containing protein / helicase domain-containing prote
            (ISS) [Ostreococcus tauri]
 gi|116058122|emb|CAL53311.1| SNF2 domain-containing protein / helicase domain-containing prote
            (ISS) [Ostreococcus tauri]
          Length = 1574

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 14/146 (9%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP--QGRTLDKDP---- 98
               W    +  ++ +  I++      +I+   ++  L  ++KA    Q R +  +     
Sbjct: 1371 SGSWGTKIEAIVRRVRFILDTDERTKLIIFSEWDDVLKVVEKAIAANQVRAMRAESGPKF 1430

Query: 99   -CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +  +G + +L         GLNL    ++L+      D     Q I+R+     
Sbjct: 1431 RAAVDRFKHDGTVSVLLLPMKRGAQGLNLTEAQHVLLL-EPVLDPGMEAQAIKRVD---- 1485

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQ 182
             + G  R   V+  + ++T++E V +
Sbjct: 1486 -RIGQTRPTCVHRFVIRDTVEENVQK 1510


>gi|26335537|dbj|BAC31469.1| unnamed protein product [Mus musculus]
          Length = 263

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRT-- 93
            +  +      ++ +  +++       +V  H    L  + K             G T  
Sbjct: 14  NRTAEAKIPCVVEYILDLLDS-GRERFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPS 72

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D++    +        +      +   GL      +++VF  L+W+     Q  +R+  
Sbjct: 73  ADREAQCQRFQLSKGHTVALLSITAANMGLTFST-ADLVVFAELFWNPGVLIQAEDRV-- 129

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G   +V ++YL+A+ T D+ +   ++ K
Sbjct: 130 ---HRIGQTNSVSIHYLVAKGTADDYLWPLIQEK 160


>gi|85099203|ref|XP_960732.1| hypothetical protein NCU03652 [Neurospora crassa OR74A]
 gi|16944466|emb|CAC18163.2| conserved hypothetical protein [Neurospora crassa]
 gi|28922252|gb|EAA31496.1| predicted protein [Neurospora crassa OR74A]
          Length = 1541

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            K  ++ N  +  +   H+    D  ++ L  + +    A  IV   +   L  L +AF +
Sbjct: 1240 KLAEIQN--IDLENGPHYTTKVDTLLRHLLWLRQSDPGAKSIVFSQYQDFLHVLAQAFER 1297

Query: 91   -----GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          ++  +  +  I +   H  +   GLNL    + +       +    
Sbjct: 1298 YHIGYSSFYRSAVSSVASFREDPSIEVFLLHARAHASGLNLVNASH-VFLCEPLLNTALE 1356

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             Q I R+      + G K+   V+  I   T+++ V + 
Sbjct: 1357 LQAIARVD-----RIGQKQETTVWLYIVDGTVEQNVYEL 1390


>gi|28603792|ref|NP_788839.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Bos taurus]
 gi|60390964|sp|Q9TTA5|SMAL1_BOVIN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|6651385|gb|AAF22285.1|AF173643_1 DNA-dependent ATPase A [Bos taurus]
 gi|296490282|gb|DAA32395.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Bos taurus]
          Length = 941

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN 105
           I+ +  ++E       +V  H    L  + K   + R                 +   ++
Sbjct: 711 IEYILDLLES-GREKFLVFAHHKVVLDAITKELERKRVQHIRIDGSTSSADRETSASSFS 769

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +         +   GL      +++VF  L+W+     Q  +R+      + G   +V
Sbjct: 770 CPRALRGVLSITAANMGLTF-SSADLVVFGELFWNPGVLMQAEDRV-----HRIGQLSSV 823

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            ++YL+A+ T D+ +   ++ K
Sbjct: 824 SIHYLVARGTADDYLWPLIQEK 845


>gi|241855293|ref|XP_002416013.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215510227|gb|EEC19680.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 675

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI--QEWNEG 107
           LE ++E       +   H    +  + +   +         G+T  +    +  +     
Sbjct: 492 LEDLLES--DQKFLCFAHHQMVIDAVCELLDKKSCSHIRIDGKTSPELRKMLCDKFQYND 549

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      +   G+ L    +++VF  L+W+     Q  +R+      + G +  V V
Sbjct: 550 MCKVAVLSITAANAGITL-SSASLVVFAELFWNPGILTQAEDRV-----HRIGQQNCVMV 603

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
            YL+A+ T D+ +   +R K   
Sbjct: 604 QYLVAKGTADDYIWPLVRNKLDT 626


>gi|222636933|gb|EEE67065.1| hypothetical protein OsJ_24029 [Oryza sativa Japonica Group]
          Length = 969

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 718 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNL----TDATVDSLIESIIIKDGVK 773

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 774 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 833

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 834 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 888 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 920


>gi|310796548|gb|EFQ32009.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 968

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 52  HDEKIKALEVII----EKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDP 98
              K+   + II    E+A    II+   F           +L  +   +  G+    + 
Sbjct: 770 PGTKLTVAKEIILQWQEEAPNDKIIIFVEFIKTAVLMGIMLNLEDIPFVYLNGKLTSTEK 829

Query: 99  -CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +    ++ +L A     G  LNL    N ++    WW+    +Q   R+     
Sbjct: 830 LKAVDTFKTNPEVKILIASMKVGGQALNLTC-ANRVIQVDSWWNEAAGEQANGRVN---- 884

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + G  +      +  + T+D+ +     +K+ 
Sbjct: 885 -RMGQLKPSHAVVIKVRGTVDDYITDLQDSKTK 916


>gi|159466410|ref|XP_001691402.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158279374|gb|EDP05135.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1610

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 72   IVAYHFNSDLARLQKAF----PQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGL 123
            +V   +   L  +++          TL+         N    +    +          GL
Sbjct: 1197 LVFSQWADALQIVERGLRANDIGCVTLESGRRMRPAMNAFLHDPACRVFLLSLRQGAAGL 1256

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             L    N +       D    QQ + R+      + G  R V V  L+  ++++  V+  
Sbjct: 1257 TLVR-ANHVFLLEPALDPAIEQQAVARV-----HRIGQTRDVSVTRLLVDDSVERHVMAM 1310

Query: 184  LRTKSTIQD 192
            L+   T++D
Sbjct: 1311 LKAGRTLRD 1319


>gi|84997577|ref|XP_953510.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304506|emb|CAI76885.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 927

 Score = 61.1 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 26  ASKTVKCLQLANGA-----------VYYDEEKHWKEVHDEKI-KALEVIIEKAN-AAPII 72
            S   K  QL   +           +  +  K     H   +  A+E  ++        I
Sbjct: 714 LSLMSKLFQLTGESKTKGVCKYIEEILENNNKFIIFAHHMFMMDAIEDTLKSKKVGYIRI 773

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--------NEGKIPLLFAHPASCGHGLN 124
                 +D ARL   F      ++     +          N G + +      SCG GLN
Sbjct: 774 DGSTKINDRARLVNLFQNNSASNESKSDAKANKVEGDDSPNNG-VRVALLSLTSCGVGLN 832

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQR 183
           L    + ++F  L+W      Q  +R+      + G K   + + YLIAQN+++E++ + 
Sbjct: 833 LT-SSSTVIFAELYWVPGVLLQAEDRV-----HRIGTKFNKININYLIAQNSVEEVMWKV 886

Query: 184 LRTKSTIQDLLLNA 197
           +  K       L+ 
Sbjct: 887 INKKYKTVTSTLDG 900


>gi|221113471|ref|XP_002160604.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
 gi|221136070|ref|XP_002171130.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 105

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N +V   + ++    +Q  +R       + G  R V VY  I ++T++E 
Sbjct: 1   GLGINLTT-ANTVVLHDIDFNPYNDKQAEDRC-----HRLGQTRQVTVYKFIGKDTVEEN 54

Query: 180 VLQRLRTKSTIQDLLL 195
           +L     K  ++  L+
Sbjct: 55  ILTCGERKLQLEKELV 70


>gi|291299114|ref|YP_003510392.1| helicase domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568334|gb|ADD41299.1| helicase domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1137

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 45  EKHWKEVHDEKIKALEV--IIEKANAAP--IIVAYHFNSDLARLQKAFP----------- 89
           ++ W E+       L+   +I   + +P   I+       L  L+               
Sbjct: 470 DRKWTELST----ILQDNALITDKSGSPRKFIIFTEHRDTLEYLRGRITSLLGRPDAVRA 525

Query: 90  --QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              G    +     +E+       +L A   + G GLNLQ   +++V + L W+    +Q
Sbjct: 526 IHGGVRRGERRQITEEFTQNSDCQILIA-TDAAGEGLNLQ-AAHLMVNYDLPWNPNRIEQ 583

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              RI      + G +    ++ ++A NT +  V  RL  K
Sbjct: 584 RFGRI-----HRIGQEEVCRLWNIVASNTREGEVFTRLLEK 619


>gi|147678776|ref|YP_001212991.1| DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146274873|dbj|BAF60622.1| hypothetical DNA/RNA helicases [Pelotomaculum thermopropionicum SI]
          Length = 1109

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 49  KEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRT 93
           K+  + K+  L  +I+    +     +++       L  L +   +           G  
Sbjct: 458 KQEIETKLNRLREVIDDEKLRETGTKLLIFTESRDTLEYLAEKIGRKWGYTVTIVHGGMG 517

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +D       E+   +  ++ A   + G G+NLQ+   ++V + + W+    +Q + RI  
Sbjct: 518 MDARIRAEYEFKN-RAQVMVA-TEAAGEGINLQF-CWLMVNYDIPWNPNRLEQRMGRI-- 572

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G +  V +Y L+A +T +  +L+ L  K
Sbjct: 573 ---HRYGQRNEVHIYNLVAADTREGRILETLFEK 603


>gi|37522310|ref|NP_925687.1| hypothetical protein gll2741 [Gloeobacter violaceus PCC 7421]
 gi|35213310|dbj|BAC90682.1| gll2741 [Gloeobacter violaceus PCC 7421]
          Length = 1066

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 24/187 (12%)

Query: 19  NIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            +  F+S  +     + LA  A+  D +       D+ I+ ++ I  +   A ++V   +
Sbjct: 463 EVAKFSSLVEALDNLVHLAGEALEQDPK------LDQFIQVIQAIRAEEPRANVLVYTEY 516

Query: 78  NSDLARLQKAFPQGRTLDK-----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                   +A  Q    D               T + +      L+     +   GLNL 
Sbjct: 517 IDTQQAAVRALKQAGFRDVLTMSGEDDEKMRTGTTERFRSED-GLILVSTDAAAEGLNLH 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + L+   L ++    +Q   RI      + G +    V YL  + T +E +L RL  
Sbjct: 576 QRCHQLIHLELPFNPNRLEQRNGRID-----RYGQQHDPIVRYLFLRGTFEERILLRLIV 630

Query: 187 KSTIQDL 193
           K   Q  
Sbjct: 631 KYEKQRA 637


>gi|114631885|ref|XP_001150802.1| PREDICTED: helicase, lymphoid-specific isoform 3 [Pan troglodytes]
          Length = 813

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 50/159 (31%), Gaps = 44/159 (27%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N + ++ +                            + +   Q  +R      
Sbjct: 655 EKNMHSFNTDPEVFIFL--------------------------NPQSDLQAQDRC----- 683

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 684 HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 722


>gi|242015993|ref|XP_002428623.1| snf2 histone linker PHD ring helicase, putative [Pediculus humanus
            corporis]
 gi|212513286|gb|EEB15885.1| snf2 histone linker PHD ring helicase, putative [Pediculus humanus
            corporis]
          Length = 1709

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 43   DEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
            D        H  K+     +L  +  +     +++   +   L  L+ A  Q     +  
Sbjct: 1247 DSGIKVIGDHSTKVDGIVRSLLSLKREDENVKVLIFSTWGVVLKILEVALTQNNISFRRM 1306

Query: 98   -----PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    ++++ +   K+  L    +    GLNL    N +       +  E  Q + R
Sbjct: 1307 PGHNYQIHLKQFKDPNLKVTALLLPISWGSKGLNLTE-ANHVFLVEPIMNPAEELQAVGR 1365

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            +      + G  +   V+  + + TI+E +   + +
Sbjct: 1366 V-----HRIGQTKKTTVHKFLIKGTIEEKINDAVSS 1396


>gi|302134007|ref|ZP_07259997.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 89

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G NL    N + F  L W      Q  +R       + G  R V V   +A++TID
Sbjct: 2   AAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQLRMVVVKIPLAEDTID 55

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           + + Q L  K  +   L++
Sbjct: 56  QQLWQMLMDKRALASDLID 74


>gi|114583218|ref|XP_001152878.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 2 [Pan
           troglodytes]
          Length = 556

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 278 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 336

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 337 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 395

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 396 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 450

Query: 187 K 187
           K
Sbjct: 451 K 451


>gi|218200743|gb|EEC83170.1| hypothetical protein OsI_28396 [Oryza sativa Indica Group]
          Length = 848

 Score = 61.1 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 79/212 (37%), Gaps = 35/212 (16%)

Query: 8   QRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------KI 56
           Q+++ C L+ ++      A  +A     CL   + A   D +     + +        K 
Sbjct: 535 QKDILCKLEEDHEMLKTSAVGAALYVHPCLSEISEANAVDRDDRVDSLVNSINLGDGVKA 594

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------GRTL---------DKDPC 99
           +    I+  AN     ++    +   +  L++   +      G+ +         +    
Sbjct: 595 RFFLNILALANSAGEKLVAFSQYTLPMKFLERLLVKEMGWYVGKEIFVINGDTSMEDGQL 654

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N      +LF    + G G++L  G + +V   +  +L      + R  +    +
Sbjct: 655 AMDQFNGSADAKVLFGSIKAFGEGISL-VGASRIVILDIHLNLS-----VTRQAIGSTFR 708

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G K+ VFVY L+A ++ +E   +    K  I
Sbjct: 709 PGQKKKVFVYRLVAADSPEEKTHETAFNKEVI 740


>gi|238482351|ref|XP_002372414.1| helicase, putative [Aspergillus flavus NRRL3357]
 gi|220700464|gb|EED56802.1| helicase, putative [Aspergillus flavus NRRL3357]
          Length = 941

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 51  VHDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPC 99
            +  K++AL   +         I+   +   L  + K     R             +   
Sbjct: 769 GYSSKMRALISDVQRDIRTTKSIIFSCWTRTLDLIAKHLKASRIEFERIDGKTSTSQRQK 828

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  ++    +P+L     +   GLNLQ   N +      W+     Q I R       +
Sbjct: 829 ILDRFDGTRTVPVLIMTTGTGAFGLNLQ-SVNRVFIVEPQWNPSVESQAIAR-----AIR 882

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G ++ V V     +N+I+E +  +   K  I  +
Sbjct: 883 LGQEQQVLVTRYRVENSIEEAMCSQQTHKLKISQM 917


>gi|218199507|gb|EEC81934.1| hypothetical protein OsI_25800 [Oryza sativa Indica Group]
          Length = 969

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 718 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNL----TDATVDSLIESIIIKDGVK 773

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 774 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 833

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 834 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 888 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 920


>gi|88811243|ref|ZP_01126499.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
 gi|88791782|gb|EAR22893.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
          Length = 940

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 20/153 (13%)

Query: 49  KEVHDEKIKALEVII-----EKANAA-PIIVAYHFNSDLARLQKAFPQGRT--------L 94
            +  D K + L  +I     E+ +    +++   F    A L +               +
Sbjct: 457 HQGTDAKAETLLELIYKLQQEENDPQLKVLIFTEFVPTQAMLAEFLESRGFSIALLNGGM 516

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D D  T  +    +   +     + G GLNLQ+  +++V F + W+    +Q I R+   
Sbjct: 517 DLDARTRAQQVFSRDARVLISTDAGGEGLNLQF-CHVIVNFDMPWNPMRLEQRIGRVD-- 573

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G    V     + ++T++  V + L  K
Sbjct: 574 ---RIGQPHVVRAINFVLEDTVEHRVREVLGEK 603


>gi|295980982|emb|CBJ57230.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 461

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 97  EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 154

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             RQ    + V +Y+ I + + D  +      K
Sbjct: 155 --RQGNENKEVDIYHYITKGSFDNYLWATQENK 185


>gi|322699210|gb|EFY90974.1| SNF2 family helicase [Metarhizium acridum CQMa 102]
          Length = 1144

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 45   EKHWKEVHDEKIKALEV-IIEKANAAPIIVAY------HFNS---DLARLQKA-FPQGRT 93
            + H       K+  L   I+   +   II+ Y       + +   D+ ++Q   + +  T
Sbjct: 861  QTHLVSTVSSKLSYLIDSIVRHQDDDKIIIFYENENVAWYLASVLDMLQIQHLIYAKTLT 920

Query: 94   LDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             ++    +  ++   +  +L    +    GL+++   + + F +   + +   Q I R+ 
Sbjct: 921  TERKAQYVNTFHHNPVFRVLLMDLSQAAFGLDMRE-ASRVYFINPVLNPQVEAQAIGRV- 978

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                R+   ++ VFV  L+ +++IDE++L+R + 
Sbjct: 979  ----RRISQQKPVFVETLVLKDSIDEVILERKQH 1008


>gi|25395804|pir||F88481 protein C16A3.1 [imported] - Caenorhabditis elegans
          Length = 866

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 58  ALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-- 101
             E I+E      A    +++  H    L  +Q    +         G+T       +  
Sbjct: 654 VCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCD 713

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +  I +      + G G+ L    +++VF  + ++     Q  +R       + G 
Sbjct: 714 SFQTDDNIRVAVLSITAAGVGITLT-AASVVVFAEIHFNPGYLVQAEDR-----AHRVGQ 767

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 768 KDSVFVQYLIAKKTADDVMWNMVQQKLDV 796


>gi|312377236|gb|EFR24119.1| hypothetical protein AND_11532 [Anopheles darlingi]
          Length = 185

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNEGKIPL--L 112
           + +        I++  H+ S   +L  A  +     ++        + E+ +    +  L
Sbjct: 32  KELKAAEPDVKIVIFSHWESIQVKLAAALKENGVTYREKSQKFFLAVDEFKDYSAGVTCL 91

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                    GLNL    + +       +  E QQ I R+      + G  R   V+  I 
Sbjct: 92  LMPLRFGSKGLNLTEATH-VFLVEPILNPGEEQQAIGRV-----HRIGQTRPTVVHRFIV 145

Query: 173 QNTIDELVLQRLRT 186
             TI+E + + ++ 
Sbjct: 146 LRTIEEKIHETIQQ 159


>gi|211997714|gb|ACJ14802.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211997717|gb|ACJ14804.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKDI 51


>gi|34394721|dbj|BAC84084.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
          Length = 872

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 624 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNL----TDATVDSLIESIIIKDGVK 679

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 680 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 739

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 740 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 793

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 794 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 826


>gi|54026418|ref|YP_120660.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54017926|dbj|BAD59296.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1136

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFP 89
            +QLA       +++ W E+        E +   ++  P  +I+       L  L+    
Sbjct: 457 LIQLAKQVRDRGDDRKWSELSRILQD--EGLTNDSSGRPRKLIIFTEHRDTLEYLRGRIG 514

Query: 90  QGRTLDKDPCTI-------------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                      I             +E+ + +   +     + G GLNLQ   +++V + 
Sbjct: 515 SLLGRPDAVQVIHGGVRRGERRRITEEFTKNRDCRILLATDAAGEGLNLQ-AAHLMVNYD 573

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L W+    +Q   RI      + G +    ++ L+A NT +  V  RL  K   Q
Sbjct: 574 LPWNPNRIEQRFGRI-----HRIGQEEVCRLWNLVALNTREGEVFARLLEKIEEQ 623


>gi|119356468|ref|YP_911112.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119353817|gb|ABL64688.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 1169

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 32/180 (17%)

Query: 48  WKEVHDEKIKALEVIIE------KANAA--PIIVAYHFNSDLARLQKAFPQ--------- 90
                D K   L  I++       A      II+       L  L +             
Sbjct: 471 VASGKDRKWDELSRILQNEPQMRDAGGRMRKIIIFSEHRDTLNYLHEKIAGVLGSHDAIV 530

Query: 91  ----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   D      + +  + +I +L A   + G G+NLQ   N++V + L W+    +
Sbjct: 531 VIHGAVHRDDRRKAQELFRSDPEIRVLVA-TDAAGEGINLQN-ANLMVNYDLPWNPNRLE 588

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           Q   RI      + G +    ++ L+A+ T +  V  RL  K  +     +ALK E  +V
Sbjct: 589 QRFGRI-----HRIGQQEVCHLWNLVAKETREGDVYFRLLEKLQVVS---DALKGEVFNV 640


>gi|154321994|ref|XP_001560312.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
 gi|150850391|gb|EDN25584.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
          Length = 730

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 20/178 (11%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
              + +  K ++L         E+    +    +K L  ++E+     ++  Y       
Sbjct: 539 VKESGRLSKLMELYRHLTITYPERKMV-MFSCFLKFL-DVVEEG----LLRDYKIQPL-- 590

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                +      D+ P   + + E K  + L     S   GLN+    +I++    WW+ 
Sbjct: 591 ----RYDGTTPTDQRPKIEEAYGESKSNVPLLMTAGSSSIGLNIT-SASIVIMCEPWWNR 645

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNAL 198
              +Q I R+      + G ++ V +Y     N+ ID+ VL     K  + + L+  L
Sbjct: 646 NLEKQAIARV-----YRQGQQKNVLLYRFFGLNSEIDQEVLSVAEAKVAVNEDLMKVL 698


>gi|331234292|ref|XP_003329806.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309308796|gb|EFP85387.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 328

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 24/169 (14%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHD--EKIKALEVIIEKANAAPII 72
            ++ +   + V   QL N     ++EK      W +       +K L + +   N A  +
Sbjct: 155 WDSIHFVGELVNLRQLCNPPALIEKEKGTGGYFWNQSSKIVHLLKDLPLFLASGNQARAV 214

Query: 73  VAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +   F   L  ++             + +     +       W +    +L A   + G 
Sbjct: 215 IFSEFKRFLQIIEIALNEWGIQFTTHYGKMDNNTQRKNLEYFWRDVSCKVLLATIKTEGV 274

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           G++L+   + +      W+    +Q I+R+      Q G K  V V  L
Sbjct: 275 GIDLRC-AHKVYLMEPTWNPAVEEQAIDRL-----YQIGQKERVQVVRL 317


>gi|297820192|ref|XP_002877979.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297323817|gb|EFH54238.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1370

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 19/139 (13%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
             +++   F   +  +++                   +K        N+     L     S
Sbjct: 1187 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMHSCNKMKSLAMFQNDADCMALLMD-GS 1245

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  + +      WD    +Q+I R       + G KR +FV  L    TI+E
Sbjct: 1246 AALGLDLSFVTH-VFLMEPIWDKSLEEQVISR-----AHRMGAKRPIFVETLTMCGTIEE 1299

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +++ L       D LL+ 
Sbjct: 1300 QMMRFLEDAEK-SDRLLSG 1317


>gi|254516518|ref|ZP_05128577.1| putative helicase, Snf2 family [gamma proteobacterium NOR5-3]
 gi|219674941|gb|EED31308.1| putative helicase, Snf2 family [gamma proteobacterium NOR5-3]
          Length = 1167

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL------ 94
            ++  + V D K++AL  II +    +   +++   F   L+ L                
Sbjct: 652 ADRASRLVDDPKLEALVGIIREKQLMDNNKLLIFSTFRHTLSYLLPRLESAGARVGLVHG 711

Query: 95  ----DKDPCTIQEW--NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               D+   T   +  N+ +               GL+ Q+  + LV + + W+    +Q
Sbjct: 712 GIADDERRQTRARFALNKAEPTAFDVLLSSEVGTEGLDNQF-CDTLVNYDIPWNPMRIEQ 770

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            I RI     R+     AV +  +I +NT+D  + 
Sbjct: 771 RIGRID----RRGQKSEAVSIKNMIVRNTVDARIY 801


>gi|120554237|ref|YP_958588.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324086|gb|ABM18401.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 1046

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 20/203 (9%)

Query: 10  ELYCDLQGENI---EAFNSASKTVKCLQLANGAVY-YDEEKHWKEVHDEKIKALEVIIEK 65
           EL  +L GE     E   S  + VK L L   ++  Y+  K     +++ I  L+    +
Sbjct: 480 ELLYELDGETEGDNEPPASMGELVKTLALVGKSIGSYESLKASDTKYNQLISVLKDYWAQ 539

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPA 117
                II+   +   L  L +   +           +DK+   I+++       +     
Sbjct: 540 YPDKKIILFAFYKGTLRYLHERLSEEGIGSLVLHGGMDKNE-VIRQFRGDAQYNILLSSE 598

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTI 176
               G++LQ+  ++L+ + L W+    +Q I RI      + G +   + ++ +I ++TI
Sbjct: 599 VAAEGVDLQFS-SVLINYDLPWNPMRIEQRIGRID-----RIGQEEDRIHIWNMIYEDTI 652

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           D+ V  RL  +  I    + +++
Sbjct: 653 DQRVYDRLLDRLDIFRNAMGSME 675


>gi|320032599|gb|EFW14551.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1406

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   + S L  L  AF + R      D      +   +  I     H  +   GL
Sbjct: 1176 GAKSIVFSQYKSFLGILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLLHAKAHSSGL 1235

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E + Q 
Sbjct: 1236 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYQL 1289


>gi|114583216|ref|XP_001152818.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 1 [Pan
           troglodytes]
          Length = 575

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 297 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 355

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 356 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 414

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 415 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 469

Query: 187 K 187
           K
Sbjct: 470 K 470


>gi|7019996|dbj|BAA90955.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 22  AFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           A ++A+K      K  Q    A+     +  +      I+ +  ++E       +V  H 
Sbjct: 341 ALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLES-GREKFLVFAHH 399

Query: 78  NSDLARLQKAFP---------QGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  + +             G T   +   + Q++    +  +      +   GL   
Sbjct: 400 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF- 458

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++VF  L+W+     Q  +R+      + G   +V ++YL+A+ T D+ +   ++ 
Sbjct: 459 SSADLVVFAELFWNPGVLIQAEDRV-----HRIGQTSSVGIHYLVAKGTADDYLWPLIQE 513

Query: 187 K 187
           K
Sbjct: 514 K 514


>gi|99035905|ref|ZP_01314954.1| hypothetical protein Wendoof_01000200 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 845

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARL 84
                  Q+ N    + ++K        K++ LE I+          ++   +      +
Sbjct: 721 KLINALKQICNHPSQFGKKKRASIEQSGKMQMLEEILISIGEVAEKSLIFTQYTEMGEII 780

Query: 85  QKAFPQ-----------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
            +   +           G +       I ++    +  +L     + G GLNL    N +
Sbjct: 781 ARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGGTGLNLT-AANHV 839

Query: 133 VFFSLW 138
           + + LW
Sbjct: 840 IHYDLW 845


>gi|116329390|ref|YP_799110.1| DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330009|ref|YP_799727.1| DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122134|gb|ABJ80177.1| DNA/RNA helicase Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123698|gb|ABJ74969.1| DNA/RNA helicase Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 951

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G NLQ+  N+L  + L W   + +Q I RI      + G K  VF++   +
Sbjct: 531 LICTEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI-----HRFGQKDNVFIFNFAS 584

Query: 173 QNTIDELVLQRLRTKSTI-------QDLLLNALKKE 201
           ++T+ E +L+ L  K  +        D LL A++ E
Sbjct: 585 KDTVAERILEVLTNKIRLFEESIGSSDELLGAIEDE 620


>gi|269839175|ref|YP_003323867.1| helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790905|gb|ACZ43045.1| helicase domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 1160

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 33/187 (17%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-------AAPIIVAYHFNS 79
           ++  K   L   A+        +  +D K   L  +++  +          IIV      
Sbjct: 458 AEIEKLRDLEGMAL-----DLVRSGNDRKWNELSNLLQSPHMLNPDGTRRKIIVFTEHLD 512

Query: 80  DLARLQKAFP--------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            L  L+K                      D+  C  +  +   + +L A   + G G+NL
Sbjct: 513 TLRYLRKRISNLLGNDEAVVAIHGGMSREDRMRCQEEFVHNPDVHVLVA-TDAAGEGINL 571

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           Q   N+LV + L W+    +Q   RI      + G      ++ L+A+ T +  V   L 
Sbjct: 572 QR-ANLLVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHMWNLVAKGTREGEVYLTLL 625

Query: 186 TKSTIQD 192
           TK   Q 
Sbjct: 626 TKLDQQS 632


>gi|169830470|ref|YP_001716452.1| helicase domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637314|gb|ACA58820.1| helicase domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 578

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G NLQ+   IL+ + L W+    +Q I R+      + G  R V +Y L 
Sbjct: 432 FLVSTDTGSEGRNLQF-CRILINYDLPWNPMRIEQRIGRL-----HRLGQTREVLIYNLS 485

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALK 199
           A  T++  +L+ L  K  +  L++  L+
Sbjct: 486 AAETVEAHLLELLDAKINMFQLVIGELE 513


>gi|119185176|ref|XP_001243398.1| hypothetical protein CIMG_07294 [Coccidioides immitis RS]
          Length = 1386

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   + S L  L  AF + R      D      +   +  I     H  +   GL
Sbjct: 1156 GAKSIVFSQYKSFLGILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLLHAKAHSSGL 1215

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E + Q 
Sbjct: 1216 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYQL 1269


>gi|254565729|ref|XP_002489975.1| hypothetical protein [Pichia pastoris GS115]
 gi|238029771|emb|CAY67694.1| Hypothetical protein PAS_chr1-1_0318 [Pichia pastoris GS115]
 gi|328350386|emb|CCA36786.1| hypothetical protein PP7435_Chr1-0638 [Pichia pastoris CBS 7435]
          Length = 1169

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 47   HWKEVHDEKIKAL-EVIIE-KANAAPIIVAYHFNSDLARLQKAFP-----------QGRT 93
                    K+  L   ++E +A     +V + F      L +A               + 
Sbjct: 895  TVVGTGSAKLSYLTARLLEHQAGGIKSLVFFEFEDSAYYLSEALDLLGVKYFMYASYKKP 954

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +++    ++         L        HGL +      + F +  W  +   Q I+R   
Sbjct: 955  IERAENLVKFTEIESGAALIMDLKLASHGLTI-IAATRVYFINPVWRRDLEAQAIKR--- 1010

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                + G ++ V V  LI + TI+E +LQ+   +++  + 
Sbjct: 1011 --AHRIGQQKEVKVETLILRGTIEEEMLQQRSAEASSNNE 1048


>gi|78190557|gb|ABB29600.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Platynereis dumerilii]
          Length = 375

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 35/174 (20%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD------ 43
           K Y    K QRE Y  +  ++I+  N A K+ K       +QL   AN    +D      
Sbjct: 201 KIYIGLSKMQREWYTKILMKDIDVVNGAGKSDKMRLLNILMQLRKCANHPYLFDGAEPGP 260

Query: 44  --EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQ 90
                     +  K+  L+ ++   +A  + +++       L  L+              
Sbjct: 261 PYTTDQHLVDNAGKMVLLDKLLMRLEAQDSRVLIFSQMTRMLDILEDYCQWRRYEYCRLD 320

Query: 91  GRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           G+T  ++   +I ++N       +      + G G+NL    +++V +   W+ 
Sbjct: 321 GQTPHEERQKSIDDFNRPDSTKFVFMLSTRAGGLGINL-ATADVVVLYDSDWNP 373


>gi|291336801|gb|ADD96336.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C700]
          Length = 239

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            + A   A    K  Q+ NG V  +          +        I+      I + Y F 
Sbjct: 45  AVVADTGAKVMSKLKQIYNGHVITERHGAIIFDKSK-----AEYIKNNFKGKIAILYCFI 99

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           ++   L++ F      D+       +N     +      SC  G+NL    + L+F  + 
Sbjct: 100 AEGKMLREYFG-----DRATDDPDVFNAVSGSVFIGQVKSCREGVNLSG-ADHLIFMGID 153

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +    + Q  ER         G  R   V+Y+ A   I+  V   ++ K +
Sbjct: 154 YSALSYLQGRERASF-----LGRDRKNKVHYIFADKGIELKVYDVVKLKES 199


>gi|189201379|ref|XP_001937026.1| hypothetical protein PTRG_06693 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984125|gb|EDU49613.1| hypothetical protein PTRG_06693 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 909

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 48  WKEVHDEKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDK 96
              V   KI  L E I    N +  IV   +   L  +                    +K
Sbjct: 759 VHTVFPSKIMTLYEDIQAHCNDSKSIVFSFWKRSLDMVAALLTVNNVSFVRVDGSVPFNK 818

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++     I +L     +   GLN     N +   +  W+     Q I R+    
Sbjct: 819 RKAILNDFKCRNDISVLLMTFGTGAVGLNSLSIANRVHILAPQWNPSVEHQAIGRVV--- 875

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             + G +  V +   I   T++E+ L 
Sbjct: 876 --RLGQQNPVTIVRYIVDKTVEEVALA 900


>gi|108759757|ref|YP_629003.1| putative RNA polymerase-associated protein RapA [Myxococcus xanthus
           DK 1622]
 gi|108463637|gb|ABF88822.1| putative RNA polymerase-associated protein RapA [Myxococcus xanthus
           DK 1622]
          Length = 1022

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
             +  L  + +   AA ++V       L  LQ    +             L +    +  
Sbjct: 502 AFLGVLRGVWKTEPAAKVLVFTESRDTLDALQSELGREGVEALGYHGDLPLVERDRQVAR 561

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + + P +       G G N Q+  + LV + L W     +Q I R+      + G   
Sbjct: 562 FRDPEGPKVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQRIGRLD-----RIGQTH 615

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKKE 201
            V ++      T+   VL  L     +        D +L  ++  
Sbjct: 616 PVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVEAR 660


>gi|115467422|ref|NP_001057310.1| Os06g0255700 [Oryza sativa Japonica Group]
 gi|52076415|dbj|BAD45245.1| putative DNA repair protein [Oryza sativa Japonica Group]
 gi|52077256|dbj|BAD46298.1| putative DNA repair protein [Oryza sativa Japonica Group]
 gi|113595350|dbj|BAF19224.1| Os06g0255700 [Oryza sativa Japonica Group]
          Length = 946

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 698 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRASNL----TDATVDSLIESIIIKDGVK 753

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 754 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 813

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 814 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 867

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 868 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|219118763|ref|XP_002180148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408405|gb|EEC48339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 773

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           ++ A+    ++        KI A     ++   A P IV   F S +   Q    +    
Sbjct: 575 SSEAILGAVQRVRLVASTAKIDATVEYAKRILEAEPAIVI--FTSFVKVAQNVHQKLTDA 632

Query: 91  --------GRTLDKDPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   G T+ K     +  +  G          + G GL L      ++     W  
Sbjct: 633 GWQGSCLTGETVAKSRQALVDNFQNGLTAFFVCTFGAGGVGLTLT-AACTVILLDRPWTP 691

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +  Q  +R+     R+ G  + V   ++ A + +D+ +   +  KS     +L+
Sbjct: 692 GDAHQAEDRV-----RRIGQTKPVKSLWMTAFD-LDKQIDSIIEQKSKTAATVLS 740


>gi|305680870|ref|ZP_07403677.1| helicase C-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659075|gb|EFM48575.1| helicase C-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 1168

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYD-----EEKHWKEVHDEKIKALEVIIEK-- 65
            +L+ +  E  + A+     +QL +     D       +   +  D K   L  I+E   
Sbjct: 431 AELEQQVDEVVDRATAAQDQVQLTHEIAVLDGLIATARRVRNQDEDRKWVELRKILESKV 490

Query: 66  -----ANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEG 107
                     II+       L  L+                  G          +++   
Sbjct: 491 LTGTNGENRKIIIFTEHRDTLTYLEDKITTQLGSTDAVVTIHGGTPRHLRQAIREQFAHD 550

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              L+     + G GLNLQ   +++V + L W+    +Q   RI      + G +    +
Sbjct: 551 PRTLVLLATDAAGEGLNLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQREVCHL 604

Query: 168 YYLIAQNTIDELVLQRLRTK 187
           + L+A NT +  V  RL  K
Sbjct: 605 WNLVAHNTREGDVFNRLLEK 624


>gi|170289581|ref|YP_001739819.1| helicase domain-containing protein [Thermotoga sp. RQ2]
 gi|222100561|ref|YP_002535129.1| Helicase domain protein [Thermotoga neapolitana DSM 4359]
 gi|170177084|gb|ACB10136.1| helicase domain protein [Thermotoga sp. RQ2]
 gi|221572951|gb|ACM23763.1| Helicase domain protein [Thermotoga neapolitana DSM 4359]
          Length = 1013

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 39/211 (18%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKIKAL 59
           Y + + E   ++        NS +K     +   G +   E+          +D K+K L
Sbjct: 343 YDEMELEENSEIDDLISSIINSVAKRYPLDK---GQINALEKILKIGKAIGKNDSKLKTL 399

Query: 60  EVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ--------------------GRTLDKD 97
             ++         +IV   F   L  L+   P                     G   ++ 
Sbjct: 400 AEVLAYHLKKNEKVIVFTEFKDTLEYLRNNLPTLLEQEGIHLSEEKDISVLHGGMKSEEI 459

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++++ N+GK   L         GLNLQ   NIL+ + + W   + +Q + RI     
Sbjct: 460 EKQVEKFANDGK---LLISTDVASEGLNLQV-ANILINYEIPWSPIKLEQRVGRIW---- 511

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +    +    Y L+  +  D  +L+ L  K
Sbjct: 512 -RLNQTKETIAYTLLLNHEADLQILESLYQK 541


>gi|325119483|emb|CBZ55036.1| hypothetical protein NCLIV_054610 [Neospora caninum Liverpool]
          Length = 1180

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 17/140 (12%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           + I++   + S L  LQ A  +         G     +   ++ +  +    +L      
Sbjct: 865 SKILIFSEWPSALDLLQVALRRTGVASLKYLGGHSKAELAKLRCFRHDPDARVLLCSLLR 924

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GL L    N ++F  +  +  E +Q + R+      +   KR   V+  I +++++E
Sbjct: 925 AGRGLTLTE-ANHVIFLEVPLNRAEEEQAVGRV-----YRMAQKRQTHVWRFIVKDSVEE 978

Query: 179 LVLQRLRT-KSTIQDLLLNA 197
            ++Q  +  + ++ + L  A
Sbjct: 979 RIVQMRQNPRDSLSERLATA 998


>gi|325093103|gb|EGC46413.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 2239

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 21/165 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDL-----ARLQKA---FPQGR 92
             K W+E    K+  L  +++     A    +++   F  DL     A LQKA        
Sbjct: 2018 GKKWQEYGGTKLLELTRLVQDTERIAEDEQVLLFIQF-PDLMEAASAALQKANIPHLMIS 2076

Query: 93   TLDKDPCT-IQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSL-WWDLEEHQ 145
              D+   + I E+       +  +L  H       GLNLQ   +++ F  L      ++ 
Sbjct: 2077 VNDRTSSSKIAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYN 2136

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +    + R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 2137 SGMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRRERLV 2180


>gi|121609717|ref|YP_997524.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121554357|gb|ABM58506.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 906

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 53/241 (21%)

Query: 5   HKFQRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDE 54
             F  E Y D +   ++   +A                 + A   V+  +++ W E+   
Sbjct: 160 DDFSPEAYEDFEEYLVDQTTAAQTIQELEAEIILLEGLEEQARQVVHSGQDRKWDEL-SR 218

Query: 55  KIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCT 100
            ++    + + A     +I+       L  L                   G   +     
Sbjct: 219 LLQDTPEMHDSAGRQRKLIIFTEHRDTLNYLAVKIRGLIGSEEAVVMIHGGVKREDRRKV 278

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +             + G G+NLQ   N++V + L W+    +Q   RI      + G
Sbjct: 279 QELFRNDPSARFLVATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIG 332

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTK----------------------STIQDLLLNAL 198
                 ++ ++A  T +  V QRL  K                       ++QDLL+ A+
Sbjct: 333 QTEVCHLWNMVAAETREGDVFQRLFEKLEVERQALGGRVFDILGEVFEEKSLQDLLIEAI 392

Query: 199 K 199
           +
Sbjct: 393 R 393


>gi|218197913|gb|EEC80340.1| hypothetical protein OsI_22411 [Oryza sativa Indica Group]
          Length = 949

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 698 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRASNL----TDATVDSLIESIIIKDGVK 753

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 754 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 813

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 814 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 867

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 868 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|222635335|gb|EEE65467.1| hypothetical protein OsJ_20857 [Oryza sativa Japonica Group]
          Length = 949

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 1   MKQYHKFQRE-----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++ Y KF+R      LY       I   ++A +          A      +        K
Sbjct: 698 IEAYEKFKRSAVGTALYIHPCLSEISEGDAADRASNL----TDATVDSLIESIIIKDGVK 753

Query: 56  IKALEVIIEKAN--AAPIIVAYHF---NSDLARL---QKAFPQGRTL----------DKD 97
            K    I+  AN     ++    +      L RL   +  +  G+ +          D++
Sbjct: 754 AKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDRE 813

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R       
Sbjct: 814 VAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR-----AF 867

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 868 RPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|58803049|gb|AAW82648.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 1017

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
             +  L  + +   AA ++V       L  LQ    +             L +    +  
Sbjct: 497 AFLGVLRGVWKTEPAAKVLVFTESRDTLDALQSELGREGVEALGYHGDLPLVERDRQVAR 556

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + + P +       G G N Q+  + LV + L W     +Q I R+      + G   
Sbjct: 557 FRDPEGPKVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQRIGRLD-----RIGQTH 610

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKKE 201
            V ++      T+   VL  L     +        D +L  ++  
Sbjct: 611 PVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVEAR 655


>gi|211997722|gb|ACJ14807.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKDI 51


>gi|261202002|ref|XP_002628215.1| DNA repair helicase [Ajellomyces dermatitidis SLH14081]
 gi|239590312|gb|EEQ72893.1| DNA repair helicase [Ajellomyces dermatitidis SLH14081]
          Length = 275

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           L+      RT  KDP            +L     + G G++L    N  +   LWW+   
Sbjct: 14  LRARDKHIRTFSKDPAA---------RILICSLRTAGIGVDLT-ATNKCILVDLWWNEAM 63

Query: 144 HQQMIE---RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            QQ          +R  +   +R V    ++ QN+ID+ +      K+   + ++
Sbjct: 64  EQQACTCTLITAFSRIFRIRQQRNVEFVRIVVQNSIDDRIQLIQNEKTDGIEQVI 118


>gi|194214436|ref|XP_001915685.1| PREDICTED: E1A binding protein p400 [Equus caballus]
          Length = 3092

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q+         E    +    K++AL ++++K  +    +++       L
Sbjct: 1827 HTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLML 1886

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +    ++    ++ +N + +I        S   G++L    +
Sbjct: 1887 DILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCAILSTHSRATGVSLVE-AD 1945

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G ++ V +Y L++ N+I+E +L+
Sbjct: 1946 AVVFYDNDLNPVMDAKAQEWCD-----RIGRRKDVHIYRLVSGNSIEEKLLK 1992


>gi|311270523|ref|XP_001927177.2| PREDICTED: e1A-binding protein p400 [Sus scrofa]
          Length = 2866

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
            ++A    +  Q+         E    +    K++AL V+++  ++    +++       L
Sbjct: 1820 HTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLML 1879

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +    ++    ++ +N + +I        S   G++L    +
Sbjct: 1880 DILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSLVE-AD 1938

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G +R V +Y L++ N+I+E +L+
Sbjct: 1939 AVVFYDNDLNPVMDAKAQEWCD-----RIGRRRDVHIYRLVSGNSIEEKLLK 1985


>gi|311270518|ref|XP_003132906.1| PREDICTED: e1A-binding protein p400-like [Sus scrofa]
          Length = 2832

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
            ++A    +  Q+         E    +    K++AL V+++  ++    +++       L
Sbjct: 1820 HTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLML 1879

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +    ++    ++ +N + +I        S   G++L    +
Sbjct: 1880 DILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSLVE-AD 1938

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G +R V +Y L++ N+I+E +L+
Sbjct: 1939 AVVFYDNDLNPVMDAKAQEWCD-----RIGRRRDVHIYRLVSGNSIEEKLLK 1985


>gi|328542136|ref|YP_004302245.1| Prophage LambdaMc01, helicase, SNF2 family [Polymorphum gilvum
           SL003B-26A1]
 gi|326411886|gb|ADZ68949.1| Prophage LambdaMc01, helicase, SNF2 family [Polymorphum gilvum
           SL003B-26A1]
          Length = 922

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKD------PCTIQEW 104
           +  L  +  +     I++   +   +  L +        QG  + +           + +
Sbjct: 507 LDGLGTLWRQNPNEKIVIFATYLGTVDLLAREIEATYPGQGVVVLRGGDHGAKAAAERRF 566

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +    A+   G+NLQ+   IL  F L W+  + +Q I RI      + G    
Sbjct: 567 KLKDGPRVLVCTAAGREGINLQF-ARILFNFDLPWNPMDMEQRIGRI-----HRYGQAHT 620

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
             VY L+  +TI+  +   L  K
Sbjct: 621 AQVYNLVLSDTIEGRIFLLLDDK 643


>gi|302801027|ref|XP_002982270.1| hypothetical protein SELMODRAFT_421707 [Selaginella moellendorffii]
 gi|300149862|gb|EFJ16515.1| hypothetical protein SELMODRAFT_421707 [Selaginella moellendorffii]
          Length = 825

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            LV     W+     Q++ RI      + G  + V +Y L++  +I+E + QR   K  +
Sbjct: 666 RLVLVDPDWNPANDAQVMSRIW-----REGQPKPVKIYRLLSTGSIEEKIYQRQIMKKDL 720


>gi|164660106|ref|XP_001731176.1| hypothetical protein MGL_1359 [Malassezia globosa CBS 7966]
 gi|159105076|gb|EDP43962.1| hypothetical protein MGL_1359 [Malassezia globosa CBS 7966]
          Length = 1126

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 18/155 (11%)

Query: 44   EEKHWKEVHDEKIKA-LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
            ++         K+   L  II+      ++V    ++ L  L  A    R          
Sbjct: 899  DDVRVHTSTSTKLNMMLSEIIDAVQDEKVLVFSTLDNVLYELANALELLRIPFLFYVSGM 958

Query: 96   ----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                ++       ++  I  L    +  G GL+L +  + ++F    W  +   Q ++R 
Sbjct: 959  PQHLRNAYANMFMHKSNIRCLLMTTSVGGRGLDL-HCASRVIFAEPVWHWDLESQAVKRA 1017

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                  + G  R V V   + ++T +E + +R +T
Sbjct: 1018 W-----RMGQTRRVLVSTYVMRHTFEERITERKQT 1047


>gi|310831061|ref|YP_003969704.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386245|gb|ADO67105.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 773

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN 105
            KI  +  II+K   +  I+  H++     + + F               K   +I+++ 
Sbjct: 642 TKISYVMDIIKKEPDSRFIIFSHWDKMFKMISQVFDTNNIKYVNIKGNMHKIANSIRKFK 701

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI--GVTRQRQAGFK 162
            + +I ++         G NL    +I+        L+ +    + I   V R  + G  
Sbjct: 702 IDNEIKVIMLSSDKANSGCNLTEANHIIF-------LDNYYLTNDTIKQSVGRAHRIGQT 754

Query: 163 RAVFVYYLIAQNTIDEL 179
           + + V  LI +NT+++ 
Sbjct: 755 KKLKVTRLIMENTLEDK 771


>gi|297567701|ref|YP_003686672.1| hypothetical protein Mesil_3352 [Meiothermus silvanus DSM 9946]
 gi|296852150|gb|ADH65164.1| hypothetical protein Mesil_3352 [Meiothermus silvanus DSM 9946]
          Length = 919

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKD 97
           D K++AL  +++   +     ++V   +   L  L ++ P            +    +++
Sbjct: 462 DSKLEALIELLKDPLRLGQGRVLVFTRYKDTLEHLLQSLPLALSQPVFGVHGEMSERERE 521

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +++ K  +L A       GLNLQ+    LV + L W+    +Q   RI      
Sbjct: 522 E-VLLAFSQQKQAVLVA-TDVFSEGLNLQHYAARLVHYDLPWNPNRLEQRNGRID----- 574

Query: 158 QAGFKRA-VFVYYLIAQNTIDELVLQRLRTKST 189
           + G     V +  L  Q + D  V + L  K+ 
Sbjct: 575 RFGQPEPTVRLRTLYYQRSFDVAVFKLLLEKAE 607


>gi|326204500|ref|ZP_08194357.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
 gi|325985293|gb|EGD46132.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
          Length = 890

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 24/153 (15%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
           D K + L   I     +     +I+   F +    L++                 +++  
Sbjct: 452 DTKAEKLLEFIYKIQMEYEDFKVIIFTEFVATQQFLKEYLESKGFKIATLNGSMDIEERN 511

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++E+ E   I        + G GLNLQ+  NI++ + L W+  + +Q I R+      
Sbjct: 512 TTLKEFKERADI---LISTDAGGEGLNLQFS-NIVINYDLPWNPMKIEQRIGRVD----- 562

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + G +R V+V+  +   T++  + + L  K   
Sbjct: 563 RIGQQRDVYVFNFMLSETVEFRIREVLEEKLAT 595


>gi|294950395|ref|XP_002786608.1| snf2 histone linker phd ring helicase, putative [Perkinsus marinus
            ATCC 50983]
 gi|239900900|gb|EER18404.1| snf2 histone linker phd ring helicase, putative [Perkinsus marinus
            ATCC 50983]
          Length = 1367

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               ++ + +G++  L    AS G GLNL    +  +         +  Q   RI      
Sbjct: 1262 SKMVERFFDGRVRTLLCPLASAGQGLNLTVASH-AILLEPPPKYSQTAQAAARIW----- 1315

Query: 158  QAGFKRAVFVYYLIAQNTIDE--LVLQRLRTKSTIQDLLLN 196
            + G ++   V++ ++  T++E    L R   +    +LL +
Sbjct: 1316 RLGQQKEATVWHFVSCRTVEEAMWTLSRRADQEEDAELLRD 1356


>gi|167518191|ref|XP_001743436.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778535|gb|EDQ92150.1| predicted protein [Monosiga brevicollis MX1]
          Length = 980

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 45  EKHWKEVHDEK-IKALEVIIEKANAAPIIVAYHFN--SDLARLQKAFPQGRTLDKDPCTI 101
           EK        K + ALE ++     A      H+    D  RL        +  +    I
Sbjct: 415 EKVVLLTQSAKTLDALEPMLAAGTKAG----RHWVMPDDYTRL----DGTESASERHQRI 466

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +    ++ LL A        ++L    + ++ F   WD       I RI      + G
Sbjct: 467 EAFSTSPRMGLLIACTKIGRLNIDLTT-ASRVIIFDAAWDALSDTSAIARI-----YRYG 520

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             R VF+Y L+A  T+D L+ +    K+     L N +KK+++  
Sbjct: 521 QTRPVFIYRLVAAGTLDVLLHRPQSNKA----RLTNYVKKDSLET 561


>gi|330956047|gb|EGH56307.1| SNF2-related:helicase [Pseudomonas syringae Cit 7]
          Length = 90

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G NL    N + F  L W      Q  +R       + G  R V V   +A++TID
Sbjct: 3   AAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQLRLVVVKIPLAEDTID 56

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           + + Q L  K  +   L++
Sbjct: 57  QQLWQMLMDKRALASDLID 75


>gi|85089833|ref|XP_958131.1| hypothetical protein NCU07358 [Neurospora crassa OR74A]
 gi|28919457|gb|EAA28895.1| predicted protein [Neurospora crassa OR74A]
          Length = 1085

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 49  KEVHDEKIKALEV-IIEKANAAPIIVAYHFNS---DLARLQKA-------FPQGRTLDKD 97
                 K+  L   II+   A  I+V Y  ++    LA + +        + +G T ++ 
Sbjct: 773 ISTASAKLSYLVDQIIQHEEAEQILVFYENDNVAYYLAEVLEVLGIQHLIYAKGITSERK 832

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +  + KI ++    +   +GL+++   + + F +   + +   Q I R      
Sbjct: 833 NHHLATFTLKPKIRVMLMDVSQAAYGLDMKT-ASRIYFINPVLNPQVGAQAIGR-----A 886

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           R+   ++ V V  L+ + +IDE++++R   
Sbjct: 887 RRISQQKPVTVETLVLRGSIDEVIVRRREE 916


>gi|312792927|ref|YP_004025850.1| helicase domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180067|gb|ADQ40237.1| helicase domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 1111

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 22/149 (14%)

Query: 53  DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           + K+  L+ +I++         ++V       L  L +   +          G  +D+  
Sbjct: 469 ETKLVRLKEVIDQERIRETGTKLLVFTESRDTLEYLAEKLKEWGYAVVTIHGGMNMDERI 528

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               E+ + K  ++ A   + G G+NLQ+   ++V + + W+    +Q + RI      +
Sbjct: 529 RAEHEF-KNKAQVMVA-TEAAGEGINLQF-CWLMVNYDIPWNPNRLEQRMGRI-----HR 580

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G +  V +Y L++ +T +  +LQ+L  K
Sbjct: 581 YGQESEVHIYNLVSGDTKEGQILQKLFQK 609


>gi|219666703|ref|YP_002457138.1| helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536963|gb|ACL18702.1| helicase domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 1168

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 22/192 (11%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +   K  ++AN      E++ W E+         +         +I+       L  L  
Sbjct: 457 ATLKKLERMANDVRQSGEDRKWDELSRLLQDNDTMFGTDGLREKLIIFTEHRDTLRYLTD 516

Query: 87  AFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
                            G   D+     + + + K   +     + G G+NLQ   +++V
Sbjct: 517 KIRSLLGNEEAVVTIHGGLLRDERRKVEELFKQDKEVRILIATDAAGEGINLQR-AHLMV 575

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + L W+    +Q   RI      + G      ++ L+++ T + +V QRL  K   Q+ 
Sbjct: 576 NYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVSKETREGMVFQRLFEKLE-QER 629

Query: 194 LLNALKKETIHV 205
              ALK +   V
Sbjct: 630 --EALKGKVFDV 639


>gi|302653761|ref|XP_003018701.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291182365|gb|EFE38056.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 519

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 31/151 (20%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC 99
             K++A+++ I    +++    I +   F   ++ +         +     G+   +   
Sbjct: 262 SAKLRAVKMFISNWLKESPDIKITIFTQFLGMISAIASVCEAEGWRYTTLCGKLHHRTRH 321

Query: 100 T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ + E  + +L +   + G GL+L    +  +   LWW+    QQ            
Sbjct: 322 ANIKRFREENVSILISSLKAGGVGLDLTM-ASKCILVDLWWNEAIEQQ------------ 368

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                 V +  +  +NT+D+ +      KS 
Sbjct: 369 ----NDVEIIRICVENTVDDRLQLIQSRKSE 395


>gi|113476663|ref|YP_722724.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|113477649|ref|YP_723710.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110167711|gb|ABG52251.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168697|gb|ABG53237.1| helicase-like [Trichodesmium erythraeum IMS101]
          Length = 1065

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 30/176 (17%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD- 97
           D K+      +  E  +   +I+   +   +  L++                G  + +D 
Sbjct: 758 DTKLSHFITTLRTELIDRDSVIIFTQYTDTMDYLRRTLKDLYGSQIACYSGRGGEVYQDQ 817

Query: 98  -------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                      Q++  G I +L     S   GLNLQ  G +++ + + W+    +Q I R
Sbjct: 818 KWCLVPKEKIKQKFRAGSIKILLC-TESASEGLNLQTCG-VIINYDMPWNPMRVEQRIGR 875

Query: 151 IGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +      + G     V +Y      T++  V ++LR +      ++  L+     V
Sbjct: 876 LD-----RIGQFYPTVRIYNFYYDGTVEAKVYKKLRDRIDTFQNIVGNLQPILAKV 926


>gi|297693490|ref|XP_002824051.1| PREDICTED: e1A-binding protein p400-like [Pongo abelii]
          Length = 3025

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1740 HAAPYFQQLRQTTVPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1799

Query: 82   ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1800 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 1858

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 1859 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 1905


>gi|302764876|ref|XP_002965859.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
 gi|300166673|gb|EFJ33279.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
          Length = 429

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +CG G++L  GG+ +V     W+    +Q + R       + G K+ V+VY L
Sbjct: 289 VILVSIKACGEGISL-VGGSRVVVLDTAWNPSTVRQAVSR-----AFRIGQKKKVYVYRL 342

Query: 171 IAQNTIDELV--LQRLRTKSTIQDLLL 195
           +  NT++  V  L+R   K  +   L 
Sbjct: 343 LVGNTLEHEVEKLRRSMRKDFLAMALF 369


>gi|302509586|ref|XP_003016753.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291180323|gb|EFE36108.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 2114

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 30/163 (18%)

Query: 53   DEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRTL-------DKDPCT- 100
              K  A+  ++E     P    +++   F   +    KA              D+ P + 
Sbjct: 1918 SSKFTAVIDLLEDTEKVPADDQVLLFIQFPELMDAASKALQSVSIPHTVIQPGDRTPTSK 1977

Query: 101  IQEWNEGKIPL----LFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ------QMIE 149
            I E+  GK  +    L  +       GLNLQ   N ++FF       ++       Q I 
Sbjct: 1978 ISEFQNGKESVKSKVLILNLGDVTASGLNLQN-ANHIIFFGPLVSRSQYDYDSGMAQAIG 2036

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R      R+ G  + V +Y+++A  T++  + +  R K  +  
Sbjct: 2037 R-----SRRYGQLKHVHIYHVLALRTVEVNIFE-QRRKQYLAK 2073


>gi|169852446|ref|XP_001832907.1| hypothetical protein CC1G_10583 [Coprinopsis cinerea okayama7#130]
 gi|116506042|gb|EAU88937.1| hypothetical protein CC1G_10583 [Coprinopsis cinerea okayama7#130]
          Length = 1280

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R  +   Q     ++   +      K  +          GLNL    + ++F    W  +
Sbjct: 1080 RFLRFTTQVSPQIREQLVLTFETSEKYRVFLMELKHGARGLNL-VSASRVIFCEPVWQAD 1138

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+R+      + G  R + V  L  + T +E ++ R        D L
Sbjct: 1139 VESQAIKRV-----HRIGQTRPITVKTLAIKGTHEENMVARRHALHNTHDKL 1185


>gi|302802704|ref|XP_002983106.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
 gi|300149259|gb|EFJ15915.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
          Length = 429

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +CG G++L  GG+ +V     W+    +Q + R       + G K+ V+VY L
Sbjct: 289 VILVSIKACGEGISL-VGGSRVVVLDTAWNPSTVRQAVSR-----AFRIGQKKKVYVYRL 342

Query: 171 IAQNTIDELV--LQRLRTKSTIQDLLL 195
           +  NT++  V  L+R   K  +   L 
Sbjct: 343 LVGNTLEHEVEKLRRSMRKDFLAMALF 369


>gi|25148958|ref|NP_498401.2| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|20451185|gb|AAM22028.1|U41534_4 Hypothetical protein C16A3.1b [Caenorhabditis elegans]
          Length = 686

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 58  ALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-- 101
             E I+E      A    +++  H    L  +Q    +         G+T       +  
Sbjct: 474 VCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCD 533

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +  I +      + G G+ L    +++VF  + ++     Q  +R       + G 
Sbjct: 534 SFQTDDNIRVAVLSITAAGVGITLT-AASVVVFAEIHFNPGYLVQAEDR-----AHRVGQ 587

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 588 KDSVFVQYLIAKKTADDVMWNMVQQKLDV 616


>gi|217968742|ref|YP_002353976.1| helicase [Thauera sp. MZ1T]
 gi|217506069|gb|ACK53080.1| helicase domain protein [Thauera sp. MZ1T]
          Length = 1037

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL----E 60
            + + E++ +L G+  +     +       L   A    +     E  D K   L    +
Sbjct: 468 EELESEVF-ELYGDAEDNEKRPNLGALLRTLVGIARRVGDH-TALESVDSKYDMLVRNLK 525

Query: 61  VIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
                     I++   + + L     RL     Q   L         ++ +   + P + 
Sbjct: 526 QYWAAYPGKKIVLFSFYRNTLHYLARRLAAEGIQSAVLHGGMDKHGVLRHFESTEGPDIL 585

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIA 172
                   G++LQ+  ++L+ + L W+    +Q I RI      + G +   + ++  I 
Sbjct: 586 ISSEVASEGVDLQFS-SLLINYDLPWNPARIEQRIGRID-----RIGQEAEKILIWNFIY 639

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +TIDE +  RL  +  I    L +++ 
Sbjct: 640 THTIDERIYDRLLERLDIFRQALGSMEA 667


>gi|189501403|ref|YP_001960873.1| helicase domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496844|gb|ACE05392.1| helicase domain protein [Chlorobium phaeobacteroides BS1]
          Length = 774

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +L A   + G G+NLQ   +++V + L W+    +Q   RI      + G     
Sbjct: 163 DPDVQVLLA-TDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVC 215

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
           +++ L+A +T +  V +RL  K
Sbjct: 216 YLWNLVADDTREGDVYRRLLEK 237


>gi|330920074|ref|XP_003298878.1| hypothetical protein PTT_09713 [Pyrenophora teres f. teres 0-1]
 gi|311327723|gb|EFQ93020.1| hypothetical protein PTT_09713 [Pyrenophora teres f. teres 0-1]
          Length = 1280

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTLD 95
                      K+  L   + +  A   II+ Y  +     + +             RTL+
Sbjct: 1001 NTRLVGTTSSKLTYLLDKVMQHQATEKIIIFYDGDDAAFYIAQCLELMYVNHRIYARTLN 1060

Query: 96   KD--PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                   ++ +NE   + +L    A    GLNL    ++++  +         Q I+R  
Sbjct: 1061 NTLRSEYVRLFNEHPDVRVLLIDVACGALGLNL-NAASVVLIVNPINRPGLEAQAIKR-- 1117

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR--TKSTIQDL 193
                 + G  + V V  L+ +NTI+  +  R +  +++  Q+ 
Sbjct: 1118 ---SHRIGQTKEVIVETLVLENTIEHAIFNRAKKMSRADHQEA 1157


>gi|76802571|ref|YP_327579.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
 gi|76558436|emb|CAI50027.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
          Length = 958

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 20/158 (12%)

Query: 47  HWKEVHDEKIKAL--EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
              +  D K++ L  E +  +     +I+   +   L  L++     ++ + +       
Sbjct: 480 RVTKTRDAKLQRLLDETLPNRFQYPRVIIFTKYVDTLEYLEEQIKDSQSDETEVFTLHGS 539

Query: 98  ---PCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  + + E +     +         G+NLQ+  N ++ + L W+    +Q   RI 
Sbjct: 540 LNEAQRKERFKEFEDSTRGVLIATDVISEGMNLQHAANQIIHYELPWNPNRLEQRNGRID 599

Query: 153 VTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKST 189
                + G K   V +  ++ ++ +D  +L++L  K+ 
Sbjct: 600 -----RYGQKNDEVVIRTMVVEDQMDVAILEKLVQKAN 632


>gi|317485751|ref|ZP_07944620.1| hypothetical protein HMPREF0179_01974 [Bilophila wadsworthia 3_1_6]
 gi|316922984|gb|EFV44201.1| hypothetical protein HMPREF0179_01974 [Bilophila wadsworthia 3_1_6]
          Length = 476

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------------RTLD 95
            + + + +I  L   + +   + +I+  ++   +A L +A P                  
Sbjct: 303 VRRLRNRRIDTLFNELRQFRTSHVIIWANYLESVAALNEALPTAFPQIPVYTLHGRVPAT 362

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I  W + +  +L A   + G+GL L    + + F+S  W      Q  +R     
Sbjct: 363 ERAAKIDLW-KKRGGVLVATQGTGGYGLTLTES-HQVFFYSENWRYALRLQAEDRC---- 416

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K +V    L  ++  DE +   L  K+      L  LK+E   +
Sbjct: 417 -HRIGQKDSVCYVTLQGESRFDERIRSALARKADA----LEELKREVRRL 461


>gi|13365849|dbj|BAB39310.1| hypothetical protein [Macaca fascicularis]
          Length = 675

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 11  HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 70

Query: 82  ARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
             L+              +  + ++    ++ +N + +I        S   G+NL    +
Sbjct: 71  DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINLVE-AD 129

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +     +  E        + G  + + +Y L++ N+I+E +L+
Sbjct: 130 TVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSIEEKLLK 176


>gi|218473432|emb|CAV31142.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 1315

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1234 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRII-- 1291

Query: 155  RQRQAGFKRAVFVYYLIAQNTID 177
              RQ    + V +Y+ I + + D
Sbjct: 1292 --RQGNENKEVDIYHYITKGSFD 1312


>gi|118580295|ref|YP_901545.1| helicase domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503005|gb|ABK99487.1| helicase domain protein [Pelobacter propionicus DSM 2379]
          Length = 1172

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 33/218 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKC---LQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + Y   +   ++   +A    +    + +  G V            D K + L  
Sbjct: 431 DEMGDDEYERFEEAVVDQATAAQTIQELEVEIHILEGLVN-QASDVVHSGQDRKWEELSN 489

Query: 62  II--------EKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCT 100
           ++        +      +I+       L  L                   G   D     
Sbjct: 490 LLQNTPEMRDKDGRQRKLIIFTEHKDTLHYLVMKIRGLIGSEDSVVTIHGGVKRDDRRKI 549

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + + N+ ++ +L A   + G G+NLQ   N++V + L W+    +Q   RI      + 
Sbjct: 550 QELFRNDPEVRVLVA-TDAAGEGINLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRI 602

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  +   ++ ++A  T +  V QRL  K  I+   L  
Sbjct: 603 GQDQVCHLWNMVANETREGDVFQRLLDKLEIERQALGG 640


>gi|119487812|ref|ZP_01621321.1| hypothetical protein L8106_30060 [Lyngbya sp. PCC 8106]
 gi|119455645|gb|EAW36782.1| hypothetical protein L8106_30060 [Lyngbya sp. PCC 8106]
          Length = 1084

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 53  DEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           D K+  L    + I  +   A I++   +        KA  +          +   N  +
Sbjct: 505 DPKLDQLIREIQTIRTQEPDANILIYTEYIDSQKAAVKALEKAEI--GTVIAMSGQNSNE 562

Query: 109 IP------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           I             L+     +   GLNLQ   + L+   L ++    +Q   RI     
Sbjct: 563 IRSQMTSRFCREANLVLISTDTAAEGLNLQQKCHHLIHLELPFNPNRLEQRNGRID---- 618

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + G K    V YL  Q T +E +L RL  K   Q  
Sbjct: 619 -RFGQKFNPEVRYLYLQGTFEERILLRLIAKYERQRS 654


>gi|323454234|gb|EGB10104.1| hypothetical protein AURANDRAFT_15050 [Aureococcus anophagefferens]
          Length = 80

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     S G GLN+    N +VF   W++ + H Q   R       + G  + V V + 
Sbjct: 1   VLLMTVHSGGTGLNITR-ANHVVFLDRWFNPQVHFQAQARC-----HRIGQDKEVDVSFF 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
            A  T+DE++ +  + K    D++L
Sbjct: 55  DATCTLDEVMAEINKLKEGNADVVL 79


>gi|323448194|gb|EGB04096.1| hypothetical protein AURANDRAFT_33074 [Aureococcus anophagefferens]
          Length = 79

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+ L  G N ++  +  W+  + +Q   RI      + G  RA  V  L+ + TI+E ++
Sbjct: 10  GVTL-IGANFMMLLNPSWNPAQDEQAAMRI-----HRIGQSRACTVIRLVGRGTIEETIV 63

Query: 182 QRLRTKSTIQDLLLNA 197
            R   K  +  +L   
Sbjct: 64  GRQAEKDGLCAILTQG 79


>gi|78190717|gb|ABB29680.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Leucosolenia sp. AR-2003]
          Length = 375

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 32/167 (19%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK------CLQL---ANGAVYYD--------EEKHW 48
           K QR  Y  +  ++I+  N A KT K       +QL    N    +D             
Sbjct: 208 KMQRAWYTKILMKDIDVVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDQH 267

Query: 49  KEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
              +  K+  L+ ++ +     + +++       +  ++  F           G T  +D
Sbjct: 268 IVDNSGKLCLLDKLLVRLKEQGSRVLIFSQMTRMMDIMEDYFMWRGHNYCRLDGSTPHED 327

Query: 98  PCT-IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               I E+N    +  +      + G G+NL    ++++ F   W+ 
Sbjct: 328 RQVSINEFNMPNSEKFVFMLSTRAGGLGINL-ATADVVILFDSDWNP 373


>gi|78190609|gb|ABB29626.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Priapulus caudatus]
          Length = 377

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 35/174 (20%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASKTVKC------LQL---ANGAVYYD--EEKH 47
           K Y    K QR+ Y  +  ++I+  N A KT K       +QL   AN    +D  E   
Sbjct: 203 KIYIGLSKMQRDWYTKILMKDIDIVNGAGKTDKLRLLNILMQLRKCANHPYLFDGAEPGP 262

Query: 48  W------KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQ 90
                     +  K+  L+ ++++     + +++       L  L+              
Sbjct: 263 PYTTDMHLVTNGGKMVILDKLLQRLKVRGSRVLIFSQMTRMLDILEDYCAWRGYDYCRLD 322

Query: 91  GRTLDKDPC-TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           G T  +D   +I E+N    +  +      + G G+NL    + ++ +   W+ 
Sbjct: 323 GSTAHEDRQNSIDEFNRPGSEKFVFMLSTRAGGLGINL-ATADSVIMYDSDWNP 375


>gi|300726698|ref|ZP_07060130.1| helicase domain protein [Prevotella bryantii B14]
 gi|299776007|gb|EFI72585.1| helicase domain protein [Prevotella bryantii B14]
          Length = 901

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 58  ALEVIIEKANAAPIIVA----YHFNSDLARLQKAF----PQGRTLD------KDPCTIQE 103
            L+ I ++     I++             R+ K F     Q +  D      +    + +
Sbjct: 385 KLQEIWKQNKQERIVIFTERIATMKYLEERITKEFNLNSDQVKRFDGSLSDTEQEDMVND 444

Query: 104 W--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +   + KI +      S   G+NL Y  +I+  + + W L   +Q   RI      + G 
Sbjct: 445 FAKEDSKIRVF-ISSDSGSQGVNLHYFCHIMFNYDIPWSLITLEQRNGRID-----RYGQ 498

Query: 162 KRAVFVYYLIAQNTI-----DELVLQRLRTK-STIQDLLLNAL 198
           K+   +YYL+A++       D  ++ +LR K   + D L +A+
Sbjct: 499 KQTPVIYYLVAKSNRQDLKTDFRIIDKLRDKEQEVHDTLGDAM 541


>gi|121607110|ref|YP_994917.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551750|gb|ABM55899.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 443

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +   P +    A+   G+NLQ+   IL  F L W+  + +Q I RI      + G 
Sbjct: 33  RRFRQKDGPRVLICTAAGREGINLQF-ARILFNFDLPWNPMDVEQRIGRI-----HRYGQ 86

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK 187
                VY  +  +TI+  +   L  K
Sbjct: 87  NHTAQVYNFVLSDTIEGRIFLMLDEK 112


>gi|25148960|ref|NP_741192.1| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|60390949|sp|Q8MNV7|SMAL1_CAEEL RecName: Full=Putative SMARCAL1-like protein
 gi|20451186|gb|AAM22029.1|U41534_5 Hypothetical protein C16A3.1c [Caenorhabditis elegans]
          Length = 690

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 58  ALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-- 101
             E I+E      A    +++  H    L  +Q    +         G+T       +  
Sbjct: 478 VCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCD 537

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +  I +      + G G+ L    +++VF  + ++     Q  +R       + G 
Sbjct: 538 SFQTDDNIRVAVLSITAAGVGITLT-AASVVVFAEIHFNPGYLVQAEDR-----AHRVGQ 591

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 592 KDSVFVQYLIAKKTADDVMWNMVQQKLDV 620


>gi|302852236|ref|XP_002957639.1| hypothetical protein VOLCADRAFT_98711 [Volvox carteri f.
           nagariensis]
 gi|300257051|gb|EFJ41305.1| hypothetical protein VOLCADRAFT_98711 [Volvox carteri f.
           nagariensis]
          Length = 1172

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKI---P 110
           +      I+V  H  + L  L+    Q +            D+    ++E+         
Sbjct: 564 DVEEGDKILVFAHHQTVLDTLEAHVKQRKVRYIRIDGSVPPDRREVAVREFQASDPHSPR 623

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GL L    +++VF  L        Q  +R       + G    V VYYL
Sbjct: 624 VALLALRAAGAGLTLT-AASVVVFAELDQTPALLAQAEDR-----AHRVGQGSHVHVYYL 677

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   T+DE + + L TK  +    L+
Sbjct: 678 LGSGTLDERIWRMLETKKFVMGAALD 703


>gi|159124104|gb|EDP49222.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1483

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 36   ANGAVYYD-EEKHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFNSDLA 82
            +N  +Y D      KE+ +         KI  L   I    E    A  I+   + + L 
Sbjct: 1221 SNSFIYTDISSGTLKEIKNIDLEASFGTKIDTLARHILWLREHDPGAKSIIFSQYKTFLE 1280

Query: 83   RLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             L  AF + +     +D      +  ++  +   F H  +   GLNL    + +      
Sbjct: 1281 VLGTAFSRFKIGYSSIDNADGIERFKSDPAVECFFLHAKAQSSGLNLVNATH-VFLCEPL 1339

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR--------LRTKSTI 190
             +     Q I R+      + G  R   V+  +  +T+++ + +         +  K  +
Sbjct: 1340 VNTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEQSIYELSVSRRLAHIVQKEKV 1394

Query: 191  QDLL 194
            ++ L
Sbjct: 1395 KEAL 1398


>gi|17552194|ref|NP_498400.1| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|14573807|gb|AAK68177.1|U41534_2 Hypothetical protein C16A3.1a [Caenorhabditis elegans]
          Length = 687

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 58  ALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI-- 101
             E I+E      A    +++  H    L  +Q    +         G+T       +  
Sbjct: 475 VCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCD 534

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +  I +      + G G+ L    +++VF  + ++     Q  +R       + G 
Sbjct: 535 SFQTDDNIRVAVLSITAAGVGITLT-AASVVVFAEIHFNPGYLVQAEDR-----AHRVGQ 588

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 589 KDSVFVQYLIAKKTADDVMWNMVQQKLDV 617


>gi|330987023|gb|EGH85126.1| helicase domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1178

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 30/203 (14%)

Query: 10  ELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           E   +L+ E     A  + + +V         V   ++K W+++        E+     +
Sbjct: 460 ETIPELEAEIWSLKALEAQALSV---------VRSGKDKKWEQLSCLLQDTPEMYTSSGS 510

Query: 68  AAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFA 114
              +I+       L  L                   G   D+     +E+      L+  
Sbjct: 511 RRKLIIFTEHRDTLNYLVTRIGSMLGKPEAVVTIHGGTNRDERRMIQEEFRNNPNVLVLI 570

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ   N++V + L W+    +Q   RI      + G      ++ ++A  
Sbjct: 571 ATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNIVANE 624

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T +  V Q+L  K  I+   L  
Sbjct: 625 TREGEVFQKLFDKMEIEKQALGG 647


>gi|71755757|ref|XP_828793.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834179|gb|EAN79681.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 952

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH---------FNSDLARLQKAFPQ 90
           VY D   +W E   EKI  +  ++   +   ++ A+H         + +D          
Sbjct: 437 VYSD---NWIE-SREKILDIVDLLLCKHGKIVLFAHHLNLLDCLTTYVNDKKVTWIRIDG 492

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G  ++     +  +N+G + +      +C  G+ L  G +  +F  L  D+   QQ  +R
Sbjct: 493 GTPMNSRVELLSRFNDGDVSVALVGITACAVGVRLT-GASCALFAELPPDIGWMQQAEDR 551

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNALK 199
           +      + G K  V +YY+I+  +  D     RL         + + +K
Sbjct: 552 L-----HRPGQKNHVILYYIISTGSFFDGAQFSRLSRSFQAVRRITDGVK 596


>gi|331013605|gb|EGH93661.1| SNF2-related:helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 316

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
           K++ +  ++ + +    +I+   +   +A L++                +  K    I  
Sbjct: 179 KVRIVADLMAELDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDA 238

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 239 FQQDQDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 292

Query: 163 RAVFVYYLIAQNTIDELVLQRL 184
           R V V   +A++TID+ + Q L
Sbjct: 293 RMVVVKIPLAEDTIDQQLWQML 314


>gi|300112788|ref|YP_003759363.1| helicase domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299538725|gb|ADJ27042.1| helicase domain protein [Nitrosococcus watsonii C-113]
          Length = 966

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 49  KEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGR-----TLDKD 97
           +   D K +AL   I      E      +++   F     ++ K F + R     TL+  
Sbjct: 477 QAGPDAKAEALIEWIYELQAEENEPDLKVLIFTEFVPT-QQMLKEFLEARGISVVTLNGS 535

Query: 98  PCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +         K   +     + G GLNLQ+  ++++ + + W+    +Q I R+  
Sbjct: 536 MDMEERKQAQDAFRKSHRVLVSTDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD- 593

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G  + V     + +++++  V + L  K
Sbjct: 594 ----RIGQPKMVRAISFVFEDSVEFRVREVLEQK 623


>gi|302690328|ref|XP_003034843.1| hypothetical protein SCHCODRAFT_81115 [Schizophyllum commune H4-8]
 gi|300108539|gb|EFI99940.1| hypothetical protein SCHCODRAFT_81115 [Schizophyllum commune H4-8]
          Length = 1215

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 22/160 (13%)

Query: 44   EEKHWKEVHDEKI-KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-------- 94
                       K+   +  ++  +     ++       LA +++A               
Sbjct: 953  AGVRILSSTSSKLNYVMNEVLRYSGDEKFLIFSESPLTLAYIEEALQLLEVRYMRFTTEA 1012

Query: 95   --DKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +    +  +    +  +          GLNL    + ++F    W  +   Q I+R+
Sbjct: 1013 KPRQREQMVMTFETSDVYRVFLMELKYGARGLNL-VSASRVIFCEPVWQADVESQAIKRV 1071

Query: 152  GVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQR---LRTK 187
                  + G KR+ V V  LI + T +E +L R   L  K
Sbjct: 1072 -----HRIGQKRSEVNVKTLIIRGTAEENMLSRRLELEGK 1106


>gi|219117189|ref|XP_002179389.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409280|gb|EEC49212.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1843

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 61   VIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLL 112
             I++ +      IV   +   +   Q+A           R+L     ++++       +L
Sbjct: 1678 DIMDVQDKGEKSIVFSQWEDMIDICQQALEDNAVGYTRARSLKDLSGSVRDLQSVGCDVL 1737

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              +      GL +    + +       +     Q + RI      + G  R  +V+  I 
Sbjct: 1738 LLNVKKAAEGLTILEASH-VFLVEPLLNHSLDSQALARIN-----RIGQTRKTYVHRYIM 1791

Query: 173  QNTIDELV 180
            ++TI+  +
Sbjct: 1792 EDTIEVKI 1799


>gi|213401273|ref|XP_002171409.1| E3 ubiquitin-protein ligase SHPRH [Schizosaccharomyces japonicus
            yFS275]
 gi|211999456|gb|EEB05116.1| E3 ubiquitin-protein ligase SHPRH [Schizosaccharomyces japonicus
            yFS275]
          Length = 1383

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 26/153 (16%)

Query: 49   KEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLD 95
            K+    KI      L  +      A ++V   +   L  L  +F           GR   
Sbjct: 1203 KQSFSSKIDTIVRHLLDVF-----AKVVVFSQWADVLDGLHLSFRANDISFVKFDGRKRG 1257

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            K      +    ++  L AH  S G  L        ++      +     Q I R+    
Sbjct: 1258 KSIQDFVKNPTKQVLTLHAHSQSSGLTL---IAATHVILCEPLLNPSLELQAISRV---- 1310

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + G  +   VY  +  N+I+E +L+    K 
Sbjct: 1311 -HRIGQTKPTSVYVYVTDNSIEEEILRLSIQKR 1342


>gi|154315192|ref|XP_001556919.1| hypothetical protein BC1G_04635 [Botryotinia fuckeliana B05.10]
 gi|150847598|gb|EDN22791.1| hypothetical protein BC1G_04635 [Botryotinia fuckeliana B05.10]
          Length = 1357

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 26/162 (16%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQ 90
           D++         K+  L+ ++ K   +   +++       L  L           +    
Sbjct: 764 DDQLKGLIASSGKMMLLDRLLAKLKKDNHRVLIFSQMVKMLDILGDYLQLRGYQFQRLDG 823

Query: 91  GRTLDKDPCTIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  +N +G           + G G+NL    + +V F   W+ +   Q +
Sbjct: 824 TVAAGPRRQAIDHFNADGSNDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQADLQAM 882

Query: 149 ERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKST 189
            R       + G K+  + +   +      +   + LR K+ 
Sbjct: 883 AR-----AHRIGQKKPFITIQRGVT-----DKEKKELREKAA 914


>gi|299883434|ref|YP_003738986.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|300712780|ref|YP_003738592.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|299126464|gb|ADJ16801.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|299126860|gb|ADJ17195.1| helicase domain protein [Halalkalicoccus jeotgali B3]
          Length = 980

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
            D K + L   +E    +     I++   +   L  L+          + +       + 
Sbjct: 463 TDSKAELLREFVERILAEDPDEKILIFTEYTDTLKYLRDTVFPEHDIAQVYGDLEQERRR 522

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  NE  + L      +   GLNLQ+  +I+V + L W+     Q + R+      
Sbjct: 523 REMEKFENEANLMLA---TDAAQEGLNLQF-AHIMVNYDLPWNPIRIDQRMGRL-----H 573

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  R V +  L   NT +  +L+ L  K+   +  L  ++ + + 
Sbjct: 574 RYGQDRTVEIRNLFFDNTRESDILELLLEKTDQIEADL-GMRSDVLG 619


>gi|146324369|ref|XP_750547.2| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|129557212|gb|EAL88509.2| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1461

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 36   ANGAVYYD-EEKHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFNSDLA 82
            +N  +Y D      KE+ +         KI  L   I    E    A  I+   + + L 
Sbjct: 1199 SNSFIYTDISSGTLKEIKNIDLEASFGTKIDTLARHILWLREHDPGAKSIIFSQYKTFLE 1258

Query: 83   RLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             L  AF + +     +D      +  ++  +   F H  +   GLNL    + +      
Sbjct: 1259 VLGTAFSRFKIGYSSIDNADGIERFKSDPAVECFFLHAKAQSSGLNLVNATH-VFLCEPL 1317

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR--------LRTKSTI 190
             +     Q I R+      + G  R   V+  +  +T+++ + +         +  K  +
Sbjct: 1318 VNTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEQSIYELSVSRRLAHIVQKEKV 1372

Query: 191  QDLL 194
            ++ L
Sbjct: 1373 KEAL 1376


>gi|153006826|ref|YP_001381151.1| helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030399|gb|ABS28167.1| helicase domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1145

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 5   HKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + ++  EL   L+   IE     SK  K  Q+ N    + +++    V  E    L+ +
Sbjct: 454 QRLEKLVELARALEKREIE-----SKLNKLRQVLNEQQIFSDKRMKLLVFTEHKDTLDYL 508

Query: 63  I-EKANAAPIIVAYHFNSDLARLQKAFPQGR--TLDKDPCTIQEWNEGKIPLLFAHPASC 119
             +  +  P+     +   + ++      G   T        +E+ E    +L A   + 
Sbjct: 509 AGDGYDGRPLGKLREWGLSVTQIHGGMQIGDRDTPGTRIYAEREFRE-DCQVLVA-TEAA 566

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+   +++ + + W+    +Q + RI      + G ++   ++   A NT +  
Sbjct: 567 GEGINLQF-CWLMINYDIPWNPVRLEQRMGRI-----HRYGQQKDCLIFNFAAVNTREGR 620

Query: 180 VLQRL 184
           VL++L
Sbjct: 621 VLEKL 625


>gi|302764302|ref|XP_002965572.1| hypothetical protein SELMODRAFT_143427 [Selaginella moellendorffii]
 gi|300166386|gb|EFJ32992.1| hypothetical protein SELMODRAFT_143427 [Selaginella moellendorffii]
          Length = 1112

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 22/171 (12%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVII---EKANAA---PIIVAYHFNSDLARLQ 85
             ++L    +  D    W+     K+  L   +   ++ N       IV   F   ++ ++
Sbjct: 919  LIELQPSYIQEDWHSEWQATSSSKVSYLVERLRGLQQENGKLPEKAIVFSQFLEHISAIE 978

Query: 86   KAFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                +G                  +++ + E    ++    +S   GL+L +  + +   
Sbjct: 979  MQLTKGGIEHAGMYSPMPAASKMKSLRTFQENPKCVVLLMDSSSALGLDLSFVTH-VFLM 1037

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               WD    +Q++ R       + G  R V V  L    TI+E +L  L+ 
Sbjct: 1038 EPIWDRSIEEQVVSR-----AHRMGATRPVLVETLAMAGTIEEQMLGFLQR 1083


>gi|302802608|ref|XP_002983058.1| hypothetical protein SELMODRAFT_155610 [Selaginella moellendorffii]
 gi|300149211|gb|EFJ15867.1| hypothetical protein SELMODRAFT_155610 [Selaginella moellendorffii]
          Length = 1114

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 22/171 (12%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVII---EKANAA---PIIVAYHFNSDLARLQ 85
             ++L    +  D    W+     K+  L   +   ++ N       IV   F   ++ ++
Sbjct: 919  LIELQPSYIQEDWHSEWQATSSSKVSYLVERLRGLQQENGKLPEKAIVFSQFLEHISAIE 978

Query: 86   KAFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                +G                  +++ + E    ++    +S   GL+L +  + +   
Sbjct: 979  MQLTKGGIEHAGMYSPMPAASKMKSLRTFQENPKCVVLLMDSSSALGLDLSFVTH-VFLM 1037

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               WD    +Q++ R       + G  R V V  L    TI+E +L  L+ 
Sbjct: 1038 EPIWDRSIEEQVVSR-----AHRMGATRPVLVETLAMAGTIEEQMLGFLQR 1083


>gi|225869333|ref|YP_002745281.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702609|emb|CAX00640.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2281

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1912 DANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1971

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1972 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 2005


>gi|284053201|ref|ZP_06383411.1| helicase-like protein [Arthrospira platensis str. Paraca]
          Length = 1044

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 33/174 (18%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKD 97
           D K+  L   +  E       IV   +   +  L++             +   G    +D
Sbjct: 729 DSKLSFLLETLRREFLERDSAIVFTQYTDTMDYLREQLRSLYGDRLACYSGRGGELPVQD 788

Query: 98  PCT----------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           P               + +G+I LL     S   GLNLQ  G +L+ + L W+    +Q 
Sbjct: 789 PEPSWRVVPKGKIKNLFRQGEIQLLLC-TESASEGLNLQTCG-VLINYDLPWNPMRVEQR 846

Query: 148 IERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           I R+      + G +   V ++ L    T++  V +RLR +  +   ++  L+ 
Sbjct: 847 IGRVD-----RIGQRYPTVKIHNLYYDGTVEAKVYRRLRERIGLFTNVVGNLQP 895


>gi|171677999|ref|XP_001903950.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937068|emb|CAP61727.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2308

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLA----RLQKAFPQGRTL------DKDPCTI 101
             K+  +  +I+   A    ++V   + S L     R+++  P+   L            +
Sbjct: 2126 SKVDHMMELIKSIIAKDERVLVFGQYQSYLEKLWSRIKEIDPKATNLALVTSSRDTSAML 2185

Query: 102  QEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE-RIGVTRQR 157
            +++  G    + LL     +   G NL    N ++F + ++   +H Q I  R    R  
Sbjct: 2186 EKFKSGTGGNVMLLNIDNDTSA-GSNLTV-ANHIIFANPYFHPNKHHQAITVRQAKGRCL 2243

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  + V+VY+ +  +T ++ +L+  +
Sbjct: 2244 RYGQMKTVYVYHFMMAHTDEDRLLREHQ 2271


>gi|15643750|ref|NP_228798.1| hypothetical protein TM0990 [Thermotoga maritima MSB8]
 gi|4981530|gb|AAD36069.1|AE001761_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 967

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 39/211 (18%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKIKAL 59
           Y + + E   ++        NS +K     +   G +   E+          +D K+K L
Sbjct: 297 YDEMELEENSEIDDLISSIINSVAKRYPLDK---GQINALEKILKIGKAIGKNDSKLKTL 353

Query: 60  EVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ--------------------GRTLDKD 97
             ++         +IV   F   L  L+   P                     G   ++ 
Sbjct: 354 AEVLAYHLKKNEKVIVFTEFKDTLEYLRNNLPTLLEQEGIHLSEEKDISVLHGGMKSEEI 413

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++++ N+GK   L         GLNLQ   NIL+ + + W   + +Q + RI     
Sbjct: 414 EKQVEKFANDGK---LLISTDVASEGLNLQV-ANILINYEIPWSPIKLEQRVGRIW---- 465

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +    +    Y L+  +  D  +L+ L  K
Sbjct: 466 -RLNQTKETIAYTLLLNHEADLQILESLYQK 495


>gi|83310005|ref|YP_420269.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944846|dbj|BAE49710.1| Superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
          Length = 760

 Score = 60.0 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDK------DPCTIQEWN-EGKIPLLFAHPASCGH 121
             +I+  H      +LQ AF     +D           ++ +  EG   L+     +   
Sbjct: 564 EKLIIFAHHIEVQQQLQVAFSDALVIDGKTSATARRKAVKAFQAEGGPRLIICSLRAAQT 623

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            L L    ++L F  L W     +Q  +R       + G    V +  ++A  ++D+ +L
Sbjct: 624 ALTLTRARHVL-FVELDWTPSGIEQAADR-----AHRIGQDGQVEITLMVAPGSLDDRML 677

Query: 182 QRLRTKSTIQDLLL 195
           + +  K  I   ++
Sbjct: 678 EVITRKRVIIRSVM 691


>gi|320592310|gb|EFX04749.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1567

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 18/152 (11%)

Query: 47   HWKEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQKAFP---QGRTLD 95
                    K+  L   I+       IIV Y       +    L  LQ       +G T +
Sbjct: 1332 QIVSTASAKLSYLLDAIVRHQETEQIIVFYDSENVAFYLAEHLEMLQVHHLIYARGITAE 1391

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    ++ +N   +  +L    +    GL++    + + F     + +   Q I R+   
Sbjct: 1392 RRAQYVETFNGNARFRVLLMDLSQAAFGLDM-RSASRIYFIGPVLNPQVEAQAIGRV--- 1447

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              R+   +R V V  L+ +++++EL+++R R+
Sbjct: 1448 --RRISQQRQVSVETLVLRDSVEELIVERRRS 1477


>gi|291568725|dbj|BAI90997.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1044

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 33/174 (18%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKD 97
           D K+  L   +  E       IV   +   +  L++             +   G    +D
Sbjct: 729 DSKLSFLLETLRREFLERDSAIVFTQYTDTMDYLREQLRSLYGDRLACYSGRGGELPVQD 788

Query: 98  PCT----------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           P               + +G+I LL     S   GLNLQ  G +L+ + L W+    +Q 
Sbjct: 789 PEPSWRVVPKGKIKNLFRQGEIQLLLC-TESASEGLNLQTCG-VLINYDLPWNPMRVEQR 846

Query: 148 IERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           I R+      + G +   V ++ L    T++  V +RLR +  +   ++  L+ 
Sbjct: 847 IGRVD-----RIGQRYPTVKIHNLYYDGTVEAKVYRRLRERIGLFTNVVGNLQP 895


>gi|149634326|ref|XP_001510803.1| PREDICTED: similar to mDomino [Ornithorhynchus anatinus]
          Length = 3040

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--- 86
              Q++   +    +    +    K++AL ++++K  +    +++       L  L+    
Sbjct: 1762 LQQISAPYLLQFPDLRLVQYDSGKLEALAILLQKLKSEGRRVLILSQMILMLDILELFLN 1821

Query: 87   -------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      +    ++    ++ +N  K I        S   G+NL    + +VF+   
Sbjct: 1822 FHFITFIRIDEYANSEQRQELMKSFNRNKRIFCAILSTHSRSTGINLVE-ADTVVFYDND 1880

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +     +  E        + G  + + +Y L++ N+++E +L+
Sbjct: 1881 LNPVMDAKAQEWCE-----RIGRCKDIHIYRLVSGNSVEEKLLK 1919


>gi|158285693|ref|XP_308421.4| AGAP007417-PA [Anopheles gambiae str. PEST]
 gi|157020116|gb|EAA04610.4| AGAP007417-PA [Anopheles gambiae str. PEST]
          Length = 1323

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 42   YDEEKHWKEVHDEKIK-----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
             D     +     K+      ALE++ E  +   I++  H+   L  +  A        +
Sbjct: 1141 IDPMHKIRGNFSNKVSKIVQTALELVAEDPS-VKIVIFSHWEPILTEVGVALAANDITLR 1199

Query: 97   DP-----CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +        + ++ + +  I  L         GLNL    + +       +  E  Q I 
Sbjct: 1200 EKSAKFYQCVADFKDPEKGITCLLLPLRFGSKGLNLTEATH-VFLVEPILNPGEEMQAIG 1258

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R+      + G  R  FV+  I  NTI+  + + ++ 
Sbjct: 1259 RV-----HRIGQTRPTFVHRFIMLNTIETTIHETIQG 1290


>gi|326471326|gb|EGD95335.1| hypothetical protein TESG_02821 [Trichophyton tonsurans CBS 112818]
          Length = 2122

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 54   EKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRTL-------DKDPCT-I 101
             K  A+  ++E A   P    +++   F   +    KA              D+ P + I
Sbjct: 1927 SKFTAVIELLEDAKRVPADDQVLLFIQFPELMDAASKALESASIPHTVIQPGDRTPTSKI 1986

Query: 102  QEWNEGKIPL----LFAHPAS-CGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVT 154
             E+  GK  +    L  +       GLNLQ   N ++FF         ++   +    + 
Sbjct: 1987 SEFQNGKESVKSKVLILNLGDVTASGLNLQN-ANHIIFFGPLVARSQYDYNSGMA-QAIG 2044

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R R+ G  + V +Y+++A  T++  + ++ R 
Sbjct: 2045 RSRRYGQLKHVHIYHVLALRTVEVNIFEKRRK 2076


>gi|261868298|ref|YP_003256220.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413630|gb|ACX83001.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 655

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 25/192 (13%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVA---- 74
           + A ++A   +K L  A  A+ + E K  +   D  ++ L + +    N   I++     
Sbjct: 407 LTALSTAFDKLKELGAAQKAIIFTESKRTQ---DYLLECLTQTLYAGENGDGIVLFNGTN 463

Query: 75  ------YHFNSDLARLQKA--FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                   +   L R + +      +T D     ++ + +     +     +   G+NLQ
Sbjct: 464 NDAQAQKIYKDWLKRHEGSDKITGSKTADTRAALVEHFKDRGC--IMIATEAGAEGINLQ 521

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLR 185
           +  ++++ + L W+ +  +Q I R       + G K  V V   + + N  D+ V + L 
Sbjct: 522 F-CSLIINYDLPWNPQRVEQRIGRC-----HRYGQKHDVVVVNFVDETNEADQRVYELLE 575

Query: 186 TKSTIQDLLLNA 197
            K  + + +L A
Sbjct: 576 QKFQLFNGVLGA 587


>gi|331089479|ref|ZP_08338378.1| hypothetical protein HMPREF1025_01961 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404847|gb|EGG84385.1| hypothetical protein HMPREF1025_01961 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 412

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
           A G  Y    +      + +  AL  I+EK   A  I+ Y+F+ +L  L++ F      D
Sbjct: 253 AAGLCYI--WRKIVNTDESRQLALLEIVEKHPRA--IIFYNFDYELELLKELFI--PHAD 306

Query: 96  KDPCTIQEWNEGK---IP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                I EWN  K   IP     +      +   G N     + ++F+S  +  +  QQ 
Sbjct: 307 TMYFEIAEWNGHKHQPIPKSESWVYLVQYNAGAEGWNC-IKTDTIIFYSQNYSYKIMQQS 365

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             RI           + ++ Y+L +++ ID  + + L+ K  
Sbjct: 366 AGRIDRLNT----PFKDLYYYHLKSRSGIDLAISKALKEKKD 403


>gi|156053363|ref|XP_001592608.1| hypothetical protein SS1G_06849 [Sclerotinia sclerotiorum 1980]
 gi|154704627|gb|EDO04366.1| hypothetical protein SS1G_06849 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2003

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +     ++E+    K  +L       G GLNL +  N  +   LWW+     Q   RI  
Sbjct: 1859 NDQAHILREFETNPKFTILIIGLKVGGVGLNLAF-ANRAIMVDLWWNAATESQANGRIF- 1916

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                + G ++       + + ++D  +L+    KS +
Sbjct: 1917 ----RIGQEKETNFARFMMRESVDIRLLRMQVEKSIV 1949


>gi|119467932|ref|XP_001257772.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119405924|gb|EAW15875.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1509

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 36   ANGAVYYD-EEKHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFNSDLA 82
            +N  +Y D      KE+ +         KI  L   I    E    A  I+   + + L 
Sbjct: 1247 SNSFIYADISSGTLKEIKNIDLEASFGTKIDTLARHILWLREHDPGAKSIIFSQYKTFLE 1306

Query: 83   RLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             L  AF + +     +D      +  ++  +   F H  +   GLNL    + +      
Sbjct: 1307 VLGTAFSRFKIGYSSIDNADGIERFKSDPAVECFFLHAKAQSSGLNLVNATH-VFLCEPL 1365

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR--------LRTKSTI 190
             +     Q I R+      + G  R   V+  +  +T+++ + +         +  K  +
Sbjct: 1366 VNTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEQSIYELSVSRRLAHIVQKEKV 1420

Query: 191  QDLL 194
            ++ L
Sbjct: 1421 KEAL 1424


>gi|108802453|ref|YP_642649.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119855279|ref|YP_935882.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|108772872|gb|ABG11593.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119697996|gb|ABL95067.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 1069

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE-WNEGKIPLLFA 114
             N    +V   +      +               GR    D   +++ +  G   +   
Sbjct: 459 PGNGEQAVVFTEYADSAQWIADRLKAEGYTAQMYSGRQSKPDRDEVRKAFMRGDFQI-IV 517

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +   G++LQ   ++LV + + W L   +Q + RI      + G +R V +Y L+A +
Sbjct: 518 TTDAGNEGIDLQ-AAHVLVNYDIPWSLVRLEQRMGRI-----HRVGQQREVHLYNLVATD 571

Query: 175 TID-ELVLQRLRTKSTIQDLL 194
           T + E +L+ L    T  + L
Sbjct: 572 TREGETLLRLLDNFVTAANEL 592


>gi|195035831|ref|XP_001989375.1| GH11691 [Drosophila grimshawi]
 gi|193905375|gb|EDW04242.1| GH11691 [Drosophila grimshawi]
          Length = 735

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 17/132 (12%)

Query: 70  PIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGK-IPLLFAHPAS 118
             I+  H    +  +               GRT+       +  + +            +
Sbjct: 521 KFIIFAHHRVMMDAISDCLRELKVQFVRIDGRTVSDVRADYVDTFQKKSSCKAAVLSLKA 580

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
           C  G+ L     ++VF  L W+     Q       +R  + G  + V   YL+A  T D+
Sbjct: 581 CNSGITLT-AAELIVFAELDWNPSTLAQA-----ESRAHRIGQTKPVICRYLMAHQTADD 634

Query: 179 LVLQRLRTKSTI 190
           ++   L++K  +
Sbjct: 635 IIWNMLKSKQEV 646


>gi|306833660|ref|ZP_07466787.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
 gi|304424430|gb|EFM27569.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
          Length = 2274

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    R V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHREVDIYHYITKGSFDNYLWQTQENK 1998


>gi|302793320|ref|XP_002978425.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
 gi|300153774|gb|EFJ20411.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
          Length = 508

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 26/161 (16%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI----------- 101
              +  L  + + AN   ++V   F +    L +     R   +D   +           
Sbjct: 300 TAFVMKLIELCQCANEK-VLVFGEFLAPFHLLLRMLELERGWSRDKEVVFLHGALVTEER 358

Query: 102 ----QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +N    +  +  A   +C  G+ L  G + +V     W+  +  Q I R     
Sbjct: 359 HELMDRFNAEGSEARVCLASIRACAEGITL-VGASRVVLLHPVWNPAQTNQAISR----- 412

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G KR VFVY L+ +  ++ +   R + K    + +  
Sbjct: 413 AFRLGQKRKVFVYRLVTE--VERVKNSRTKWKDFCSEAIFE 451


>gi|154321115|ref|XP_001559873.1| hypothetical protein BC1G_01432 [Botryotinia fuckeliana B05.10]
 gi|150851970|gb|EDN27162.1| hypothetical protein BC1G_01432 [Botryotinia fuckeliana B05.10]
          Length = 855

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 38  GAVYYDEEK-----------HWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLA 82
            A+Y D  K              +    KI  L   I    E    +  IV   F   L 
Sbjct: 588 SAIYSDVSKATLSAIKNIELQDNKSFGTKIDTLARHILYLRESDPGSKSIVFSQFTEFLP 647

Query: 83  RLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            L  AF   R     +D+     +  N+  I +   H  +   GL L    N  +FF   
Sbjct: 648 VLASAFDAFRIGHSSIDRPNGVEKFKNDPGIEVFLLHSRAHSAGLTLVNASN--IFFCEP 705

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                    I   G +R  + G K    ++ ++  NT+D+ + + 
Sbjct: 706 ----LLNTAIALQGESRVHRIGQKFETNIWVMVMGNTVDQSIYEL 746


>gi|315045562|ref|XP_003172156.1| hypothetical protein MGYG_04745 [Arthroderma gypseum CBS 118893]
 gi|311342542|gb|EFR01745.1| hypothetical protein MGYG_04745 [Arthroderma gypseum CBS 118893]
          Length = 1517

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGL 123
             A  IV     S L+ L+     F  G +   +   I+ + E         H  +   GL
Sbjct: 1257 GAKSIVFSQNKSFLSTLRLVFYRFKIGHSSIDEQSGIERFKEDHTKECFLLHAKAHASGL 1316

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 1317 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEETIYQ 1369


>gi|225563147|gb|EEH11426.1| DNA repair protein rad8 [Ajellomyces capsulatus G186AR]
          Length = 2156

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDL-----ARLQKA---FPQGR 92
             K W+E    K+  L  +++     A    +++   F  DL     A LQKA        
Sbjct: 1958 GKKWQEYGGTKLLELTRLVQDTERIAEDEQVLLFIQF-PDLMEAASAALQKANIPHLMIS 2016

Query: 93   TLDKDPCT-IQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSL-WWDLEEHQ 145
              D+   + I E+       +  +L  H       GLNLQ   +++ F  L      ++ 
Sbjct: 2017 VNDRTSSSKIAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYN 2076

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              +    + R R+ G ++ V +Y+ +A  TI+  + ++ R
Sbjct: 2077 SGMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRR 2115


>gi|259484742|tpe|CBF81224.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1415

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 32   CLQLANGAVYYDEE-KHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFN 78
              Q ++ ++Y D       E+ +         KI  L   I    E    A  IV   + 
Sbjct: 1136 LEQHSSNSIYTDIGSGTLHEIKNIDLKDSFGTKIDTLARHILWLREHDPGAQSIVFSQYK 1195

Query: 79   SDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
              L  L  AF + +     +D+     +   +  I     H  +   GLNL    + +  
Sbjct: 1196 GFLDYLANAFRRFKIGYSSVDESDGIEKFKKDPGIECFLLHAKAHSSGLNLVNATH-VFL 1254

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 +     Q I R+      + G  R   V+  +  +T+++ +  
Sbjct: 1255 CEPLINTAIELQAIARV-----HRIGQHRPTTVWMYLISDTVEKSIYD 1297


>gi|307109751|gb|EFN57988.1| hypothetical protein CHLNCDRAFT_142147 [Chlorella variabilis]
          Length = 944

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G G+ L  G +I +      +    +Q I R       + G  + + V 
Sbjct: 824 LEVFLLTYRAGGAGITLTAGTHI-ILCEPTLNPSFEKQAIGR-----SHRMGQTKPLTVT 877

Query: 169 YLIAQNTIDELVLQRLRTKST 189
            ++   TI+E V + +  + +
Sbjct: 878 RMLMLGTIEEKVAEFVERQKS 898


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score = 59.6 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 19/167 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAF-----PQ 90
              A   D+       H  K+  +  +++       ++V   F   LA++           
Sbjct: 2188 CAAFAADDGATVAAPHGAKLAQIVDLVKSLPGDERVLVFVQFADLLAKVDGVLNDSGIKT 2247

Query: 91   GRTLDKDPCTIQE---WN-------EGKIPLLFAHPASCGHGLNLQYGGN-ILVFFSLWW 139
             +        +     +        + ++ LL  H  S   G NL    + I V      
Sbjct: 2248 LKIKGSAHQMMNAMTAFQAETLAKDDPRVLLLELHNESA-SGANLTTANHAIFVHPLHVD 2306

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             L+ +    E   + R R+ G KR V +Y  +A +T+D  + +  R 
Sbjct: 2307 KLQTYM-ACETQAIGRVRRYGQKRTVNLYRFLAADTVDSRLFESRRD 2352


>gi|153815156|ref|ZP_01967824.1| hypothetical protein RUMTOR_01381 [Ruminococcus torques ATCC 27756]
 gi|145847724|gb|EDK24642.1| hypothetical protein RUMTOR_01381 [Ruminococcus torques ATCC 27756]
          Length = 412

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-PQGRTL 94
           A G  Y    +      + +  AL  I+EK   A  I+ Y+F+ +L  L++ F P   T+
Sbjct: 253 AAGLCYI--WRKIVNTDESRQLALLEIVEKHPRA--IIFYNFDYELKLLKELFIPYADTM 308

Query: 95  DKDPCTIQEWN--------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             +   I EWN        E K  +      +   G N     + ++F+S  +  +  QQ
Sbjct: 309 YFE---IAEWNGHKHQPIPESKNWVYLVQYNAGAEGWNC-IKTDTIIFYSQNYSYKIMQQ 364

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              RI           + ++ Y+L +++ ID  + + L+ K  
Sbjct: 365 SAGRIDRLNT----PFKDLYYYHLKSRSGIDLAISKALKEKKD 403


>gi|211997720|gb|ACJ14806.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKDI 51


>gi|295675218|ref|YP_003603742.1| helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435061|gb|ADG14231.1| helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 1173

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 51/217 (23%)

Query: 4   YHKFQRELY---------CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y  F+ E+           +L+ E +   +   K               +        D 
Sbjct: 439 YENFEEEVVDQATAAQTIAELEAEVVTLEHLEKKAKALR----------DGGQ-----DR 483

Query: 55  KIKALEVIIE---KANA-----APIIVAYHFNSDL----ARLQKAFPQ---------GRT 93
           K + L  I++   +          +I+       L     R++    +         G  
Sbjct: 484 KWEELREILQNTPEMRGPDGLQRKLIIFTEHRDTLNYLADRIRGLLGKHEAVTMIHGGTH 543

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D      + +   K   +     + G G+NLQ   N++V + L W+    +Q   RI  
Sbjct: 544 RDDRRKVQELFRNDKDTRVLLATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-- 600

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G  +   ++ ++A  T +  V Q+L  K  +
Sbjct: 601 ---HRIGQTQVCHLWNMVAAETREGDVFQKLLEKLEV 634


>gi|147677051|ref|YP_001211266.1| DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146273148|dbj|BAF58897.1| hypothetical DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 46  KHWKEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
           +  + + D + +AL   +      E       ++   F      L++             
Sbjct: 454 RQCESLPDARAEALLEWMYRLQAEENDPELKFLIFTEFIPTQEMLKEFLENRGFSVVCLN 513

Query: 94  ----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               L++     QE+  G   +      + G GLNLQ+  ++++ + L W+    +Q I 
Sbjct: 514 GSMGLEERRRVQQEF-AGHARV-LVSTDAGGEGLNLQF-CHVVINYDLPWNPMRLEQRIG 570

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R+      + G +  V     + Q+TI+  V + L+ K
Sbjct: 571 RVD-----RIGQEHVVRALNFVLQDTIEYRVQEVLQEK 603


>gi|322501081|emb|CBZ36158.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1230

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   +++ +  +           + G G+NLQ   +++V     +      Q + R+   
Sbjct: 795 ERLTSVRRFREDPACLFFLLSIKAGGCGINLQ-AAHMVVLVDRDYTATNEDQALARV--- 850

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G +  V   YL   +  ++ V QR   K+  +  ++N
Sbjct: 851 --YRIGQRHTVRAVYLATTDASEQRVAQRAAAKNKPRQAIIN 890


>gi|146093740|ref|XP_001466981.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071345|emb|CAM70031.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 1230

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   +++ +  +           + G G+NLQ   +++V     +      Q + R+   
Sbjct: 795 ERLTSVRRFREDPACLFFLLSIKAGGCGINLQ-AAHMVVLVDRDYTATNEDQALARV--- 850

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G +  V   YL   +  ++ V QR   K+  +  ++N
Sbjct: 851 --YRIGQRHTVRAVYLATTDASEQRVAQRAAAKNKPRQAIIN 890


>gi|302063935|ref|ZP_07255476.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           K40]
          Length = 89

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G NL    N + F  L W      Q  +R       + G  R V V   +A +TID
Sbjct: 2   AAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQLRMVVVKIPLADDTID 55

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           + + Q L  K  +   L++
Sbjct: 56  QQLWQMLMDKRALASDLID 74


>gi|189198616|ref|XP_001935645.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187982744|gb|EDU48232.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1218

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP--------QGRTLD 95
                      K+  L   + +  A   II+ Y  ++    + +             RTL+
Sbjct: 939  NTRLVGTTSAKLTYLLDKVMQHQATDKIIIFYDGDNAAFYIAQCLELMYVNHRIYARTLE 998

Query: 96   KD--PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                   ++ +NE   + +L    A    GLNL    ++++  +         Q I+R  
Sbjct: 999  NTLRSEYVRLFNEHPDVRVLLIDVACGALGLNL-NAASVVLIVNPINRPGLEAQAIKR-- 1055

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 + G  + V V  L+ +NTI+  +  R + 
Sbjct: 1056 ---SHRIGQTKEVIVETLVLENTIEHAIFNRAKK 1086


>gi|327303100|ref|XP_003236242.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
 gi|326461584|gb|EGD87037.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
          Length = 2122

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 22/158 (13%)

Query: 54   EKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRTL-------DKDPCT-I 101
             K  A+  ++E     P    +++   F   +    KA              D+ P + I
Sbjct: 1927 SKFTAVIDLLEDTEKVPANDQVLLFIQFPELMEAASKALESASIPHTVIQPGDRTPTSKI 1986

Query: 102  QEWNEGKIPL----LFAHPAS-CGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVT 154
             E+  GK  +    L  +       GLNLQ   N ++FF         ++   +    + 
Sbjct: 1987 SEFQNGKESVKSKVLILNLGDVTASGLNLQN-ANHIIFFGPLVARSQYDYDSGMA-QAIG 2044

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R R+ G  + V +Y+++A  T++  + +  R K  +  
Sbjct: 2045 RSRRYGQLKHVHIYHVLALKTVEVNIFE-QRKKQYLAK 2081


>gi|49257012|dbj|BAD24804.1| lymphoid specific helicase variant9 [Homo sapiens]
          Length = 809

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
             +  K   L+ ++ +       +++     S L  L            D C ++++N  
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILM-----------DYCHLRDFNFS 643

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++              + +             + +   Q  +R       + G  + V V
Sbjct: 644 RLD--------GSMSYSEREKNMHSFNTDPEVNPQSDLQAQDRC-----HRIGQTKPVVV 690

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y L+  NTID+ +++R   K  ++ L++
Sbjct: 691 YRLVTANTIDQKIVERAAAKRKLEKLII 718


>gi|330931683|ref|XP_003303496.1| hypothetical protein PTT_15727 [Pyrenophora teres f. teres 0-1]
 gi|311320467|gb|EFQ88402.1| hypothetical protein PTT_15727 [Pyrenophora teres f. teres 0-1]
          Length = 735

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           +  + +K L++I    +    I+A  +     D  RL+                + ++  
Sbjct: 578 ITSQYLKVLDMIKAALHERFGIIALEYNGVTPDSVRLENL-----------SQFKNYSHP 626

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +PLL     + G G+N+Q   +I++   +WW+     Q+  R+      + G    V +
Sbjct: 627 SVPLLL-SGKAGGEGINIQQ-ASIMIQTEIWWNRNAELQVYSRLL-----RPGQLHKVII 679

Query: 168 YYLIAQN-TIDELVLQRLRTKSTIQDLLL 195
             L  +  +ID+ ++     K T   +L+
Sbjct: 680 IRLQGKGCSIDDCIIGVQCRKKTTNTILM 708


>gi|241202956|ref|YP_002974052.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856846|gb|ACS54513.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1170

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 33/218 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDE 54
                E    L+   I+   +A                 + A   V   +++ W E+   
Sbjct: 426 DDLSAEEQESLEENLIDDATAAKTVAELEAEIVILKGLEEQAKAVVASGQDRKWDEL-SR 484

Query: 55  KIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCT 100
            ++    + + +     II+       L  LQ                  G   D+    
Sbjct: 485 ILQNNPEMRDASGRQRKIIIFSEHRDTLNYLQARIAGVLGNPDAIVTIHGGTHRDERRRL 544

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +  +  + +L A   + G G+NLQ   N++V + L W+    +Q   RI      + 
Sbjct: 545 QALFRSDPDVRVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRI 597

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 598 GQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|317028687|ref|XP_001390499.2| hypothetical protein ANI_1_1528034 [Aspergillus niger CBS 513.88]
          Length = 906

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 52  HDEKIKALEVII--------EKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPC 99
              KI+AL   I        EK      ++  ++   L  +     +     R +D    
Sbjct: 723 PSAKIRALLRNITKSRSISDEKGVQTKFVIFSYWTKMLDLIATALTENHLTFRRIDGRSS 782

Query: 100 TIQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             Q          + +  ++ A   + G G++L    +I +     W+     Q I+R+ 
Sbjct: 783 LSQRKEALGVFGSDPQCIIMLASIGAAGEGIDLTAANSIHI-VEPQWNPMAEAQAIDRV- 840

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G +R V V   I   +I+   +Q
Sbjct: 841 ----HRIGQERDVEVVRYITSESIESEAIQ 866


>gi|134058188|emb|CAK38380.1| unnamed protein product [Aspergillus niger]
          Length = 961

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 52  HDEKIKALEVII--------EKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPC 99
              KI+AL   I        EK      ++  ++   L  +     +     R +D    
Sbjct: 712 PSAKIRALLRNITKSRSISDEKGVQTKFVIFSYWTKMLDLIATALTENHLTFRRIDGRSS 771

Query: 100 TIQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             Q          + +  ++ A   + G G++L    +I +     W+     Q I+R+ 
Sbjct: 772 LSQRKEALGVFGSDPQCIIMLASIGAAGEGIDLTAANSIHI-VEPQWNPMAEAQAIDRV- 829

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G +R V V   I   +I+   +Q
Sbjct: 830 ----HRIGQERDVEVVRYITSESIESEAIQ 855


>gi|9367860|emb|CAB97530.1| RAD26L hypothetical protein, alternatively spliced product; similar
           to (AF217319) putative repair and recombination helicase
           RAD26L [Mus musculus] [Homo sapiens]
          Length = 365

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 200 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 259

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTRQRQ 158
           ++E+N    + +  A   + G GLN   G N++V F   W+     Q I+R     R+ +
Sbjct: 260 VKEFNSTQDVNICLASTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDRTQTHCRRER 318


>gi|291240565|ref|XP_002740192.1| PREDICTED: Chromodomain-helicase-DNA-binding protein 1-like
           [Saccoglossus kowalevskii]
          Length = 938

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 33/182 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           K Y    + L  +L G         +  ++  +L N       E +             K
Sbjct: 768 KNYKALSKGLKGNLSGF-------LNIMMELKKLCNHPYLIRPEDNGITDLENLIRTSGK 820

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQE 103
           +  L+ ++ + +     +++       L  L      K +P  R             +  
Sbjct: 821 VHLLDKLLTRLHETGHRVLIFSQMVRMLDILADYLSMKHWPFQRLDGSISSEVRKQALDH 880

Query: 104 WN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N EG +         + G G+NL    + ++ F   W+ +   Q   R       + G 
Sbjct: 881 FNAEGSMDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQ 934

Query: 162 KR 163
           + 
Sbjct: 935 RN 936


>gi|224077876|ref|XP_002305447.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222848411|gb|EEE85958.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 630

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 23/152 (15%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW------ 104
            + E A    ++V   + + L  L++   + +             +     +EW      
Sbjct: 446 SLCESA-GEKLLVFSQYLTPLKFLERLVMKVKGWILGKEIFVISGESSSDHREWSMERFN 504

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N     + F    +CG G++L  G + ++   +  +     Q I R       + G  + 
Sbjct: 505 NSMDAKVFFGSIKACGEGISL-VGASRIIILDVHLNPSVTCQAIGR-----AFRPGQTKK 558

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ Y L+A ++ +E        K  I  +   
Sbjct: 559 VYAYRLVAADSPEEEDHTTCFRKEAIAKMWFE 590


>gi|87308613|ref|ZP_01090753.1| prophage LambdaMc01, helicase, SNF2 family protein [Blastopirellula
           marina DSM 3645]
 gi|87288705|gb|EAQ80599.1| prophage LambdaMc01, helicase, SNF2 family protein [Blastopirellula
           marina DSM 3645]
          Length = 493

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 48  WKEVHDEKIKALEV-IIEKANAAPIIVAYH-------FNSDLARLQKAFPQGRTLDKDPC 99
            +E  D K + ++  +++ A    I+           F + L R  +       +     
Sbjct: 44  VRECPDLKWEFIKEKVVDLAGEEKIVFFAQPIETVTTFVNFLKR--EYGEDVSVIIGGQS 101

Query: 100 T------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  ++++ +           + G G+NLQ     LV   + W+  + +Q + R+  
Sbjct: 102 DAERSAEVEKFLKPDGARFLVSSKAGGEGINLQV-ARRLVHIDVPWNPMDMEQRVGRV-- 158

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G +R + V  ++ +++ +E   +  R K
Sbjct: 159 ---HRFGSRRNIVVDTIVVKDSREEHAYRAAREK 189


>gi|115524177|ref|YP_781088.1| helicase domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518124|gb|ABJ06108.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
          Length = 953

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 49  KEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDP--- 98
           +E+ D K+ AL      +  +   A +++    N     L+    +    +   K     
Sbjct: 338 EELGDAKLDALIDHLRGLFSRDRDARVVIVAEDNPTTDYLRDGIEKLADVKVAKKRRIVG 397

Query: 99  -------------CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                          + ++  G+  +L A   +   G NLQ+  + ++FF+L W   + Q
Sbjct: 398 AAEKLEVHVADLKEALDDFISGEAKVLVAS-DAAREGHNLQF-ADEIIFFALPWSPPDIQ 455

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           Q I RI     +     R + +  ++ + +I++ +L  L  
Sbjct: 456 QWIGRIDRLGTKGRAANRRIAITPIVIEGSIEDQILAVLEG 496


>gi|258652709|ref|YP_003201865.1| helicase domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258555934|gb|ACV78876.1| helicase domain protein [Nakamurella multipartita DSM 44233]
          Length = 217

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAG 160
             +  G++ LL     + G G+ L  G +   + +   W   E  Q  +R       + G
Sbjct: 89  DAYQAGRLSLLVCSIPTIGVGVTLTRGCD--AWMAETSWTPSEISQAEDRQW-----RRG 141

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V   I   T+DE V   L  K+   D +L  
Sbjct: 142 QSRDVVVTTFIGVGTLDERVQDSLARKADDLDQVLTG 178


>gi|255941182|ref|XP_002561360.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585983|emb|CAP93720.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2162

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 47   HWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCT 100
              + +   K+  L  II        +I+    N  L     A        +     +   
Sbjct: 1972 EDQAIQSTKLDKLVEIIRNVPEDELVIIFVQINHLLPVASNALKAANIDHRMVTQTNLKG 2031

Query: 101  IQEW-NEGKIPLLFAHP------------ASCGHGLNLQYGGNILVFFSL--WWDLEEHQ 145
            I E+ +  K       P             S   GLNLQ   N ++F S        ++ 
Sbjct: 2032 IDEFKDSPKPKKGTIQPPSRPKALILNLGTSMAAGLNLQC-ANHVIFLSPYFTTSHHDYD 2090

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +    + R R+ G +R V+VY+L+ +NT D  + Q+ ++
Sbjct: 2091 SGM-TQAIGRARRFGQEREVYVYHLLVKNTYDVNIFQKAQS 2130


>gi|147834946|emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera]
          Length = 985

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 29  TVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLAR 83
           + + L L   +GA +   E  W E+   K+  L  ++    +     I++  ++   L  
Sbjct: 518 SGRLLFLCVRSGA-WTGGEGIWVEL-SGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDL 575

Query: 84  L-----QKAFPQGRT-----LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNI 131
                 ++ +P  R      ++K    +  +N+      +      + G GLNL  GGN 
Sbjct: 576 FAQLCRERRYPYLRLDGTTSINKRQKLVNRFNDPLKDEFVFLLSSKAGGCGLNL-IGGNR 634

Query: 132 LVFFSLWWDLEEHQQMIERI 151
           LV F   W+    +Q+ +R 
Sbjct: 635 LVLFDPDWNPANDKQVFQRQ 654


>gi|115453047|ref|NP_001050124.1| Os03g0352500 [Oryza sativa Japonica Group]
 gi|113548595|dbj|BAF12038.1| Os03g0352500 [Oryza sativa Japonica Group]
          Length = 214

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++  
Sbjct: 1   AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKG 46


>gi|119613043|gb|EAW92637.1| RAD26L hypothetical protein, isoform CRA_c [Homo sapiens]
          Length = 672

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   +++       L  LQ+             G T  ++    
Sbjct: 507 SGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 566

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTRQRQ 158
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+R     R+ +
Sbjct: 567 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAIDRTQTHCRRER 625


>gi|76156662|gb|AAX27825.2| SJCHGC07730 protein [Schistosoma japonicum]
          Length = 135

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  +N+ K P  L      +   G+NL  G N +V F   W+     Q       
Sbjct: 56  EREKLINNFNDPKNPAKLFLMSTRAGCLGVNL-VGANRVVGFDASWNPCHDCQ-----SR 109

Query: 154 TRQRQAGFKRAVFVYYLIAQNTI 176
            R  + G  +  ++Y L + NT+
Sbjct: 110 CRVYRYGQVKPCYIYRLGSDNTM 132


>gi|323449101|gb|EGB04992.1| hypothetical protein AURANDRAFT_17564 [Aureococcus anophagefferens]
          Length = 76

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVF----FSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +  +L    A+ G GLN+     +++     F             E     R  + G 
Sbjct: 1   DPETSVLLLTLATAGVGLNITNANKVVILEPFRFG----------SNEAQAAMRVHRIGQ 50

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKS 188
            R V +     + T+DE +L+ LR K 
Sbjct: 51  SRDVEIIKFFTRGTMDERLLK-LRHKR 76


>gi|297810883|ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319162|gb|EFH49584.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1194

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQEWN-EGK 108
           E I    ++  ++V  H +  L  +Q+             G TL +D    +Q +    +
Sbjct: 551 EDIDGDTSSTKMVVFAHHHKVLDGIQEFMCDKGIGFVRIDGMTLPRDRQLAVQSFQFSSE 610

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G GL+     N +VF  L        Q  +R       + G   AV VY
Sbjct: 611 VKVAIIGVEAGGVGLDFSAAQN-VVFLELPKTPSLLLQAEDR-----AHRRGQTSAVNVY 664

Query: 169 YLIAQNTIDELVLQRLRTK 187
              A++T+DE   Q L  K
Sbjct: 665 IFCAKDTMDESNWQNLNKK 683


>gi|218200266|gb|EEC82693.1| hypothetical protein OsI_27351 [Oryza sativa Indica Group]
          Length = 1547

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L        +GLNL    + ++      +     Q I RI      + G  ++ F++ 
Sbjct: 1400 QVLLMLIQHGANGLNLLEAQH-VILVEPLLNPAAEAQAISRI-----HRVGQDKSTFIHR 1453

Query: 170  LIAQNTIDELVLQRLRTKS 188
             I +NTI+E + +  R ++
Sbjct: 1454 FIVKNTIEESIYKLNRGRA 1472


>gi|75908408|ref|YP_322704.1| type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75702133|gb|ABA21809.1| type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 1172

 Score = 59.2 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----ARLQKAFPQGRT------- 93
           +K W+E+ +      E+   + +   +++       L     R++    +          
Sbjct: 484 DKKWEELSNLLQNNAEMFNAEGHRRKLVIFTEHRDTLNYLTDRIRTLLGRNEAVVTIHGA 543

Query: 94  --LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++       + +     +     + G G+NLQ   +++V + L W+    +Q   RI
Sbjct: 544 MGREERRKAQDAFTQDIEVQVLIATDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI 602

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
                 + G      ++ L+A++T +  V   L  K    Q  L
Sbjct: 603 -----HRIGQTEVCHLWNLLAKDTREGDVYLALLKKVEAEQKAL 641


>gi|134288138|ref|YP_001110302.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134132788|gb|ABO60414.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 599

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEWNEGKIPLLFAHPASC 119
             P +V  H +  +  LQ      R        T D+     + + +G+  L      + 
Sbjct: 422 GEPTVVFAHHHDVVDYLQAELADFRPVLITGRQTEDQKWIAKESFIKGESLLCIVALRAA 481

Query: 120 GHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G++ LQ    + VF  L W    H+Q  +R+      + G +  V  YYL++   +D 
Sbjct: 482 -TGIDGLQSRARVAVFAELDWSPAIHKQAEDRL-----HRDGQQNPVLCYYLVSDAGVDP 535

Query: 179 LVLQRLRTKSTIQDLLL 195
            +L+ L  K+     L+
Sbjct: 536 DMLENLGAKAQQFIGLM 552


>gi|303288742|ref|XP_003063659.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454727|gb|EEH52032.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 518

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDK-DPCTIQEWNEG 107
           LE +I+        + +  +++L           ++Q     G T        ++ +   
Sbjct: 379 LETLIDGGADK--FLFFAHHAELLDAAAATLKKRKIQHIRIDGSTPSTARGKLVETFQTV 436

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +      + G GL L    + ++F  L W   E  Q  +R       + G   +V 
Sbjct: 437 DAVRVAVLSIKAAGVGLTLT-AASAVIFGELSWTPGEIVQAEDR-----AHRIGQVNSVS 490

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V +L A+NT+D+++   ++ K
Sbjct: 491 VQFLCARNTVDDIMWGSVQNK 511


>gi|42780097|ref|NP_977344.1| SNF2 family helicase [Bacillus cereus ATCC 10987]
 gi|4584117|emb|CAB40614.1| SNF2-like helicase [Bacillus cereus ATCC 10987]
 gi|42736015|gb|AAS39952.1| helicase, SNF2 family [Bacillus cereus ATCC 10987]
          Length = 631

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 82/211 (38%), Gaps = 30/211 (14%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
             L  +  +     +   +  ++A    Y   +     +   K +    +I         
Sbjct: 413 LGLLDDEFDLTQVNALNDEEREIARIRAYQQLQVDI--IPSAKFEKGIQLIMDLVGKGKK 470

Query: 71  IIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IV   F   + ++++   Q          G   D+    I ++ +G++ ++ ++P + G
Sbjct: 471 VIVWGMFVKTMQKIKQVLQQKGVSVNLVYGGTPKDERVKLINDFRDGEVEVMISNPNTLG 530

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF--VYYLIAQNT--- 175
             ++L    +  ++F   ++L    Q  +RI      + G K   +   YYL+ +     
Sbjct: 531 ESISLHQTVHDAIYFEYNFNLTFMLQSRDRI-----HRLGLKDDQYTRYYYLMTEGDRAH 585

Query: 176 ---IDELVLQRLRTKSTIQDLLLNALKKETI 203
              ID+ + +RL+ K  +   +L+A+  E +
Sbjct: 586 GGFIDQAIYKRLKEKEQV---MLDAIDGELL 613


>gi|170086666|ref|XP_001874556.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649756|gb|EDR13997.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1926

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 13   CDLQGENIEAFNSASKTV-KCLQLANG-AVYYDEEKHWKEV--HDEKIKALEVIIEKA-- 66
            C  + E + A + A K+  + L +  G  +  D+E           K++ +  +I K   
Sbjct: 1732 CAEKEECVHAASGACKSAARVLNVVRGDTLGVDDEARDGHGRHFGLKLEKVIDLIRKKIP 1791

Query: 67   NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F  DL +          ++    +G    K        N  +  +L  + 
Sbjct: 1792 KDERVLLFVQF-PDLMKKVTEALAVNKIKYLEIKGTAHQKSKNLELFQNGSEERVLLLNV 1850

Query: 117  A-SCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G NL    N  +F S       E +    E   + R  + G +R V+V+  +  
Sbjct: 1851 MDESASGANLT-SANHAIFLSPLLAPSQEIYN-ACETQAIGRLVRYGQERHVYVWRFLTT 1908

Query: 174  NTIDELVLQRLRTKSTI 190
            NTIDE + +  + K+ +
Sbjct: 1909 NTIDEEIYE--QRKAAV 1923


>gi|75674449|ref|YP_316870.1| helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419319|gb|ABA03518.1| Superfamily II DNA/RNA helicase, SNF2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 541

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           L+     G +  ++  TI  +  N  +I        +   G+NLQ   N+L+ F L W+ 
Sbjct: 341 LKVGIINGSSGQRNQDTIARFRGNPPEIR-AIVSTEAGSEGVNLQI-ANVLINFDLPWNP 398

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +Q I R+    QR     + V +Y ++   T +E ++ RL TK  +    +  ++ 
Sbjct: 399 MIVEQRIGRV----QRLGSQHKNVVIYNVMLAGTFEEYIVGRLMTKLQMATDAIGDIES 453


>gi|195108187|ref|XP_001998674.1| GI23502 [Drosophila mojavensis]
 gi|193915268|gb|EDW14135.1| GI23502 [Drosophila mojavensis]
          Length = 120

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 93  TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T      TI+ +NE   P +L         GLNL    ++LV  S W    + Q  I R+
Sbjct: 4   TSSNTQDTIKNFNESDEPCVLLLTLGLAKSGLNLYGANSLLVMDSHWNPHLKPQSAIYRM 63

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                      R V VY L+ ++T+D  + Q  + K  +   +L A
Sbjct: 64  D-------QRNRNVSVYQLVCKDTVDGTIQQVQQNKLNLAFQVLRA 102


>gi|169260103|gb|ACA51933.1| DNA methylase [Streptococcus equinus]
          Length = 908

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 539 DANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 598

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 599 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 632


>gi|167998999|ref|XP_001752205.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162696600|gb|EDQ82938.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1520

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L        +GLNL    ++++              +E   + R  + G  RA 
Sbjct: 1374 QGPVQVLLMPIRHGANGLNLVEAQHVMLL------EPLLNPAMEAQAINRVHRIGQTRAT 1427

Query: 166  FVYYLIAQNTIDELVLQRLRTKST 189
            FV+  I  +T++E +    R K+ 
Sbjct: 1428 FVHRFIVHDTVEESIYGLRRQKAM 1451


>gi|154287644|ref|XP_001544617.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408258|gb|EDN03799.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1117

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           R+     + +T       +  +NE + + +L        HGL++    + +   +  WD 
Sbjct: 865 RIYANTLKTKTR---SEYLSLFNETESVRVLLMDLRQAAHGLHI-ACASRVFIVNPIWDP 920

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               Q I+R       +    + V+V  L+ + T+++ +L+R   K      L +A K
Sbjct: 921 NFESQAIKR-----AHRISQNKPVYVETLVLKGTLEDRMLRR--RKQMSNAELRHAEK 971


>gi|228482586|gb|ACQ43545.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482588|gb|ACQ43546.1| brahma-like protein [Anopheles arabiensis]
 gi|228482590|gb|ACQ43547.1| brahma-like protein [Anopheles arabiensis]
 gi|228482592|gb|ACQ43548.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482594|gb|ACQ43549.1| brahma-like protein [Anopheles gambiae S]
 gi|228482596|gb|ACQ43550.1| brahma-like protein [Anopheles gambiae S]
 gi|228482598|gb|ACQ43551.1| brahma-like protein [Anopheles gambiae S]
 gi|228482600|gb|ACQ43552.1| brahma-like protein [Anopheles gambiae S]
 gi|228482602|gb|ACQ43553.1| brahma-like protein [Anopheles gambiae S]
 gi|228482604|gb|ACQ43554.1| brahma-like protein [Anopheles gambiae S]
 gi|228482606|gb|ACQ43555.1| brahma-like protein [Anopheles gambiae S]
 gi|228482608|gb|ACQ43556.1| brahma-like protein [Anopheles gambiae M]
 gi|228482610|gb|ACQ43557.1| brahma-like protein [Anopheles gambiae S]
 gi|228482612|gb|ACQ43558.1| brahma-like protein [Anopheles gambiae S]
 gi|228482614|gb|ACQ43559.1| brahma-like protein [Anopheles gambiae M]
 gi|228482616|gb|ACQ43560.1| brahma-like protein [Anopheles gambiae S]
 gi|228482618|gb|ACQ43561.1| brahma-like protein [Anopheles gambiae M]
 gi|228482620|gb|ACQ43562.1| brahma-like protein [Anopheles gambiae M]
 gi|228482622|gb|ACQ43563.1| brahma-like protein [Anopheles gambiae S]
 gi|228482624|gb|ACQ43564.1| brahma-like protein [Anopheles gambiae S]
 gi|228482626|gb|ACQ43565.1| brahma-like protein [Anopheles gambiae M]
 gi|228482628|gb|ACQ43566.1| brahma-like protein [Anopheles gambiae S]
 gi|228482630|gb|ACQ43567.1| brahma-like protein [Anopheles gambiae M]
 gi|228482632|gb|ACQ43568.1| brahma-like protein [Anopheles gambiae M]
 gi|228482634|gb|ACQ43569.1| brahma-like protein [Anopheles gambiae M]
 gi|228482636|gb|ACQ43570.1| brahma-like protein [Anopheles gambiae M]
 gi|228482638|gb|ACQ43571.1| brahma-like protein [Anopheles gambiae M]
 gi|228482640|gb|ACQ43572.1| brahma-like protein [Anopheles gambiae M]
 gi|228482642|gb|ACQ43573.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482644|gb|ACQ43574.1| brahma-like protein [Anopheles arabiensis]
 gi|228482646|gb|ACQ43575.1| brahma-like protein [Anopheles arabiensis]
 gi|228482648|gb|ACQ43576.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482650|gb|ACQ43577.1| brahma-like protein [Anopheles gambiae S]
 gi|228482652|gb|ACQ43578.1| brahma-like protein [Anopheles gambiae S]
 gi|228482654|gb|ACQ43579.1| brahma-like protein [Anopheles gambiae S]
 gi|228482656|gb|ACQ43580.1| brahma-like protein [Anopheles gambiae S]
 gi|228482658|gb|ACQ43581.1| brahma-like protein [Anopheles gambiae S]
 gi|228482660|gb|ACQ43582.1| brahma-like protein [Anopheles gambiae S]
 gi|228482662|gb|ACQ43583.1| brahma-like protein [Anopheles gambiae S]
 gi|228482664|gb|ACQ43584.1| brahma-like protein [Anopheles gambiae M]
 gi|228482666|gb|ACQ43585.1| brahma-like protein [Anopheles gambiae S]
 gi|228482668|gb|ACQ43586.1| brahma-like protein [Anopheles gambiae S]
 gi|228482670|gb|ACQ43587.1| brahma-like protein [Anopheles gambiae M]
 gi|228482672|gb|ACQ43588.1| brahma-like protein [Anopheles gambiae S]
 gi|228482674|gb|ACQ43589.1| brahma-like protein [Anopheles gambiae M]
 gi|228482676|gb|ACQ43590.1| brahma-like protein [Anopheles gambiae M]
 gi|228482678|gb|ACQ43591.1| brahma-like protein [Anopheles gambiae S]
 gi|228482680|gb|ACQ43592.1| brahma-like protein [Anopheles gambiae S]
 gi|228482682|gb|ACQ43593.1| brahma-like protein [Anopheles gambiae M]
 gi|228482684|gb|ACQ43594.1| brahma-like protein [Anopheles gambiae S]
 gi|228482686|gb|ACQ43595.1| brahma-like protein [Anopheles gambiae M]
 gi|228482688|gb|ACQ43596.1| brahma-like protein [Anopheles gambiae M]
 gi|228482690|gb|ACQ43597.1| brahma-like protein [Anopheles gambiae M]
 gi|228482692|gb|ACQ43598.1| brahma-like protein [Anopheles gambiae M]
 gi|228482694|gb|ACQ43599.1| brahma-like protein [Anopheles gambiae M]
 gi|228482696|gb|ACQ43600.1| brahma-like protein [Anopheles gambiae M]
          Length = 270

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 20/125 (16%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCT 100
              K + L+ I+ K  A    +++       +  ++              G T  ++   
Sbjct: 152 ASGKFELLDRILPKLKATGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLDGTTKSEERGD 211

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           + +++N       L      + G GLNLQ   + +V F   W+  +  Q        R  
Sbjct: 212 LLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA-----QDRAH 265

Query: 158 QAGFK 162
           + G +
Sbjct: 266 RIGQR 270


>gi|297744768|emb|CBI38030.3| unnamed protein product [Vitis vinifera]
          Length = 856

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGR---------------TLDKDPCTIQEWN-EGK 108
           +++   ++V   +   L  L+K   + +               + ++   +++ +N    
Sbjct: 669 QSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPD 728

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             + F    +CG G++L     +L+              + R  + R  + G K+ V VY
Sbjct: 729 ARVFFGSIKACGEGISLVGASRVLILD------VHLNPSVTRQAIGRAFRPGQKKKVHVY 782

Query: 169 YLIAQNTIDE 178
            L+A ++ +E
Sbjct: 783 KLVAADSPEE 792


>gi|147773526|emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]
          Length = 1187

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGR---------------TLDKDPCTIQEWN-EGK 108
            +++   ++V   +   L  L+K   + +               + ++   +++ +N    
Sbjct: 948  QSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPD 1007

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              + F    +CG G++L     +L+              + R  + R  + G K+ V VY
Sbjct: 1008 ARVFFGSIKACGEGISLVGASRVLILD------VHLNPSVTRQAIGRAFRPGQKKKVHVY 1061

Query: 169  YLIAQNTIDE 178
             L+A ++ +E
Sbjct: 1062 KLVAADSPEE 1071


>gi|154281551|ref|XP_001541588.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411767|gb|EDN07155.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 550

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLAR----------LQKAFPQ 90
            + W+E    K+  L  +++     A    +++   F  DL            +      
Sbjct: 352 GEKWQEYGGTKLLELTRLVQDTERIAEDEQVLLFIQF-PDLMEAASAALQKANIPHLMIS 410

Query: 91  GRTLDKDPCTIQEWNEGKI---PLLFAHPAS-CGHGLNLQYGGNILVFFSL-WWDLEEHQ 145
                      +     +     +L  H       GLNLQ   +++ F  L      ++ 
Sbjct: 411 VNDRTSSSKIAEFQTRAEKVGSKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYN 470

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +      R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 471 SGMA-QATGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRRERLV 514


>gi|222637695|gb|EEE67827.1| hypothetical protein OsJ_25598 [Oryza sativa Japonica Group]
          Length = 1663

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L        +GLNL    + ++      +     Q I RI      + G  ++ F++ 
Sbjct: 1516 QVLLMLIQHGANGLNLLEAQH-VILVEPLLNPAAEAQAISRI-----HRVGQDKSTFIHR 1569

Query: 170  LIAQNTIDELVLQRLRTKS 188
             I +NTI+E + +  R ++
Sbjct: 1570 FIVKNTIEESIYKLNRGRA 1588


>gi|331028047|ref|YP_004421762.1| DNA methylase [Synechococcus phage S-CBS3]
 gi|294805660|gb|ADF42498.1| DNA methylase [Synechococcus phage S-CBS3]
          Length = 754

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G I +L + P+ CG G+N Q   + + F  L    E   Q I R       + G ++
Sbjct: 341 FQQGTIRVLVSKPSICGFGMNFQQ-CHNVAFVGLSHSYEAFYQAIRRCW-----RYGQQQ 394

Query: 164 AVFVYYL--IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V  + +  +A+  + + + ++    + + + +++ +K+ T+ 
Sbjct: 395 PVQAHIIYDVAEGAVVQNIRRKESESTAMAEAMVSIMKESTMQ 437


>gi|327348877|gb|EGE77734.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 2158

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
             ++ W+     K+  L  +I+     A    +++   F+  +     A  Q         
Sbjct: 1959 SDEKWQGYRGTKLLELIRLIQDTDRIAEDEQVLLFIQFSDLMESASAALQQANIPHLMIP 2018

Query: 92   RTLDKDPCTIQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWW--DLEEH 144
             T       I ++  G    K  +L  H       GLNLQ   N ++FF   +     ++
Sbjct: 2019 ATDRMASSKIAQFQTGTEKVKSKVLILHLGDVSASGLNLQN-ANHVIFFHPLFAKSQYDY 2077

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +    + R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 2078 NSGMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLV 2122


>gi|239610686|gb|EEQ87673.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 1945

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
             ++ W+     K+  L  +I+     A    +++   F+  +     A  Q         
Sbjct: 1746 SDEKWQGYRGTKLLELIRLIQDTDRIAEDEQVLLFIQFSDLMESASAALQQANIPHLMIP 1805

Query: 92   RTLDKDPCTIQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWW--DLEEH 144
             T       I ++  G    K  +L  H       GLNLQ   N ++FF   +     ++
Sbjct: 1806 ATDRMASSKIAQFQTGTEKVKSKVLILHLGDVSASGLNLQN-ANHVIFFHPLFAKSQYDY 1864

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +    + R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 1865 NSGMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLV 1909


>gi|261195100|ref|XP_002623954.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587826|gb|EEQ70469.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1894

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
             ++ W+     K+  L  +I+     A    +++   F+  +     A  Q         
Sbjct: 1695 SDEKWQGYRGTKLLELIRLIQDTDRIAEDEQVLLFIQFSDLMESASAALQQANIPHLMIP 1754

Query: 92   RTLDKDPCTIQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWW--DLEEH 144
             T       I ++  G    K  +L  H       GLNLQ   N ++FF   +     ++
Sbjct: 1755 ATDRMASSKIAQFQTGTEKVKSKVLILHLGDVSASGLNLQN-ANHVIFFHPLFAKSQYDY 1813

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +    + R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 1814 NSGMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLV 1858


>gi|224003263|ref|XP_002291303.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973079|gb|EED91410.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 69

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNT 175
            + G GLNL    ++ +    WW+     Q + RI      + G K   V V   +  ++
Sbjct: 2   KAGGVGLNLVAASSVFIL-DPWWNASVEDQCVNRI-----HRIGQKAEVVRVRKFVVTDS 55

Query: 176 IDELVLQRLRTKS 188
           ++E ++     K 
Sbjct: 56  VEEKIVSLQGKKK 68


>gi|152982150|ref|YP_001354424.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151282227|gb|ABR90637.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 1173

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 33/203 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVHDEKIKALEVII----- 63
           D +       + A+      +L    +  D      ++      D K   L  ++     
Sbjct: 438 DYENFEETVVDQATAAQTIQELEAEIIILDALEEQAKQVVHSGQDRKWDELSSLLQSPTM 497

Query: 64  --EKANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEW--NEG 107
             E      +I+       L  L                  G    ++   +QE   N+ 
Sbjct: 498 REESGRQRKLIIFTEHRDTLNYLAVKIRGLIGNEDAVTMIHGGIKREERRKVQELFRNDP 557

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L A   + G G+NLQ   N++V + L W+    +Q   RI      + G      +
Sbjct: 558 ATRVLLA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHL 610

Query: 168 YYLIAQNTIDELVLQRLRTKSTI 190
           + ++A  T +  V QRL  K  +
Sbjct: 611 WNMVAAETREGDVFQRLFEKLEV 633


>gi|171684657|ref|XP_001907270.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942289|emb|CAP67941.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1139

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 49   KEVHDEKIKALEV--IIEKANAAPII------VAYHFNSDLARLQ-KAFPQGRTL--DKD 97
                  K+  L    I  + +   II      VAY+    L  LQ +     R L   + 
Sbjct: 864  ISTASAKLSYLIDQVIKYQEHEQIIIFYENDNVAYYLAGVLEILQVQHLIYARGLSPQRR 923

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N   K  +L         GL++    + + F +   + +   Q I R      
Sbjct: 924  ADYVATFNQSSKFRVLLMDITQAAFGLDM-KSASRIYFINPVLNPQVEAQAIGR-----A 977

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            R+   ++ V V  L+ +++++E++++R   K   Q
Sbjct: 978  RRISQQKPVTVETLVLKDSVEEVIVRR--RKEMTQ 1010


>gi|296421314|ref|XP_002840210.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636424|emb|CAZ84401.1| unnamed protein product [Tuber melanosporum]
          Length = 1119

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 18/152 (11%)

Query: 47  HWKEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
                  +K+  L   ++E      I++ Y        + +                   
Sbjct: 814 EIIGTASQKLTYLLDKVLEYHETEKILIFYESEDVAFYIAQGLEIIGVEYLGYQKNLPSH 873

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +K    +         +     +    GLN+    + + F +  W      Q + R    
Sbjct: 874 EKAKYLVTFQFSQTFRVFLMDLSQAAFGLNI-SAASRIFFVNPVWQPSVEHQALAR---- 928

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + G KR V+   LI  +TI+  +  R + 
Sbjct: 929 -AHRIGQKRPVYAETLILNHTIEREMWDRRQG 959


>gi|157872353|ref|XP_001684725.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127795|emb|CAJ06200.1| hypothetical protein LMJF_30_1300 [Leishmania major strain
           Friedlin]
          Length = 1235

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGG 129
           ++V Y ++   A   +    G +  +   +++ +  +           + G G+NLQ   
Sbjct: 775 LLVDYLYSRGWADHAEVLTGGSSEAERLTSVRRFREDPGCLFFLLSIKAGGCGINLQ-AA 833

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +++V     + +    Q + R+      + G +  V   YL   ++ ++ V QR   K+ 
Sbjct: 834 HMVVLVDRDYTVTNEDQALARV-----YRIGQRYTVRAVYLATTDSSEQHVAQRATAKNK 888

Query: 190 IQDLLLN 196
            +  ++N
Sbjct: 889 PRQAIIN 895


>gi|229578385|ref|YP_002836783.1| helicase domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228009099|gb|ACP44861.1| helicase domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 895

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-------------RTLDK 96
            D ++KAL  ++         +I+   +      +                     T+++
Sbjct: 378 SDSRVKALINLVGTHLNKGDKVIIFTEYKDTANYILGKLKDALNLTDREIKVVTSVTINQ 437

Query: 97  DPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I+ W E K   +         GLNLQ   N+++ + +   +   +Q   R+    
Sbjct: 438 EGIDRIKGWLESKESKVLIATDVASEGLNLQ-SANVIIHYEIPLSIVRFEQRNGRVW--- 493

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +    R V++YY+  +  +++ +L+    K
Sbjct: 494 --RLKQTRPVYIYYISLKIPLEQALLENYYNK 523


>gi|238580466|ref|XP_002389294.1| hypothetical protein MPER_11594 [Moniliophthora perniciosa FA553]
 gi|215451409|gb|EEB90224.1| hypothetical protein MPER_11594 [Moniliophthora perniciosa FA553]
          Length = 97

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +     WW      Q I+R+      + G  + V VY LI++NT++  VL     K 
Sbjct: 1   ANNVYLMDPWWQEGIESQAIDRVN-----RIGQTKPVHVYQLISENTVESRVLDIQERKK 55

Query: 189 TIQDLLLNALKK 200
            +     + +K+
Sbjct: 56  NLIKQAFSGMKR 67


>gi|301775627|ref|XP_002923234.1| PREDICTED: LOW QUALITY PROTEIN: e1A-binding protein p400-like
            [Ailuropoda melanoleuca]
          Length = 2910

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
             +    K++AL ++++K  +    +++       L  L+              +    ++
Sbjct: 1723 VQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQ 1782

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++ +N + +I        S   G++L    + +VF+    +     +  E      
Sbjct: 1783 RQELMRSFNRDRRIFCAILSTHSRATGVSLVE-ADAVVFYDNDLNPVMDAKAQEWCE--- 1838

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G ++ V +Y L++ N+I+E +L+
Sbjct: 1839 --RIGRRKDVHIYRLVSGNSIEEKLLK 1863


>gi|73994977|ref|XP_543352.2| PREDICTED: similar to E1A binding protein p400 (p400 kDa
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein) [Canis familiaris]
          Length = 3119

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
             +    K++AL ++++K  +    +++       L  L+              +    ++
Sbjct: 1884 VQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQ 1943

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++ +N + +I        S   G++L    + +VF+    +     +  E      
Sbjct: 1944 RQELMRSFNRDRRIFCAILSTHSRATGVSLVE-ADAVVFYDNDLNPVMDAKAQEWCE--- 1999

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G ++ V +Y L++ N+I+E +L+
Sbjct: 2000 --RIGRRKDVHIYRLVSGNSIEEKLLK 2024


>gi|218191620|gb|EEC74047.1| hypothetical protein OsI_09041 [Oryza sativa Indica Group]
          Length = 952

 Score = 58.8 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQK----------AFPQG 91
              W E+   K+  L  ++   +      I++  ++   L    +               
Sbjct: 581 GGMWVEL-SGKMHVLARLLGHLHLKTDDRIVLVSNYTQTLDLFAQLCRERRYPYIRLDGA 639

Query: 92  RTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +++K    + ++N+      +      + G GLNL  GGN L+ F   W+    +Q+ +
Sbjct: 640 TSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNPANDKQVYQ 698

Query: 150 RI 151
           R 
Sbjct: 699 RQ 700


>gi|326472754|gb|EGD96763.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1510

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
             A  IV     S L  L   F     G +   DP  I+ + E         H  +   GL
Sbjct: 1250 GAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECFLLHAKAHASGL 1309

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 1310 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQ 1362


>gi|242051306|ref|XP_002463397.1| hypothetical protein SORBIDRAFT_02g043040 [Sorghum bicolor]
 gi|241926774|gb|EER99918.1| hypothetical protein SORBIDRAFT_02g043040 [Sorghum bicolor]
          Length = 1475

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 36/154 (23%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW------- 104
            I      A ++V   +N  L  L+               GR   K    +  +       
Sbjct: 1258 ITSTDGTAKVLVFSSWNDVLDVLEHSLAANNISYVRMKGGR---KSQAALSRFKGQVSNV 1314

Query: 105  ----------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                      N   + +L        +GLNL    + ++      +     Q I RI   
Sbjct: 1315 NVDEVKKTASNMKPVQVLLMLIQHGANGLNLLEAQH-VILVEPLLNPAAEAQAISRI--- 1370

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               + G  ++ FV+  I + TI+E + +  R+++
Sbjct: 1371 --HRVGQDKSTFVHRFIVKKTIEESIYKLNRSRA 1402


>gi|295672956|ref|XP_002797024.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb01]
 gi|226282396|gb|EEH37962.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb01]
          Length = 1480

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   R     +D    T +   +  I     H  +   GL
Sbjct: 1236 GAKSIVFSQYKPFLGILARAFSHFRIGFSSIDYHDGTERFKRDPSIECFLLHAKAHSSGL 1295

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1296 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYD 1348


>gi|149186589|ref|ZP_01864901.1| putative helicase (Snf2 family) protein [Erythrobacter sp. SD-21]
 gi|148829816|gb|EDL48255.1| putative helicase (Snf2 family) protein [Erythrobacter sp. SD-21]
          Length = 992

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV----IIEKAN 67
             L  E+ +  N  +      +   GA+  +       E  D K + L      I +   
Sbjct: 418 LSLDDEDDDNGNK-TLPGPLTE-TLGAICDNSRVLASLEASDTKFQRLVEWLRKIRQDHP 475

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTI-QEWNEGKIPLLFAHPAS 118
              +I+   F   +  L +               +D D  TI   + +     +      
Sbjct: 476 DEKVIIFSSFRKTIDYLARRLEDAGFESIELHGGIDLDRQTIVNSFADAPAGTVLLTSEV 535

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTID 177
            G GL+LQ+   IL  + L W+    +Q I RI      + G +   + +  LIA+ TI+
Sbjct: 536 GGEGLDLQF-CRILFNWDLPWNPMRVEQRIGRID-----RIGQQSPSIDIINLIAEKTIE 589

Query: 178 ELVLQRL 184
           E V +RL
Sbjct: 590 ERVYERL 596


>gi|323474068|gb|ADX84674.1| helicase domain protein [Sulfolobus islandicus REY15A]
          Length = 895

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 70/177 (39%), Gaps = 29/177 (16%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDK 96
           +D +IKAL  +++        +IV   +      +     +               T+++
Sbjct: 378 NDSRIKALTNLVKAHLNRGDKVIVFTEYKDTANYILDKLKRELNLSDKEIKKVTSETVNQ 437

Query: 97  DPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I++W E K   +         GLNLQ   N+++ + +   +   +Q   R+    
Sbjct: 438 EGIDQIKKWLESKESKVLVATDVASEGLNLQ-SANVIIHYEIPLSIVRFEQRNGRVW--- 493

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-------STIQDLLLNALKKETIHV 205
             +    + V++YY+  +  +++ +L+    K       +   + +++AL  + + V
Sbjct: 494 --RLKQTKPVYIYYISLKIPLEQALLENYYNKLLSITKGTGSSEKVVDALIYQGVSV 548


>gi|264680182|ref|YP_003280091.1| hypothetical protein CtCNB1_4049 [Comamonas testosteroni CNB-2]
 gi|262210697|gb|ACY34795.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 1177

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 21/202 (10%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y +F+ E+          A   A         + A   V   +++ W+E+ +      E+
Sbjct: 439 YEQFEEEVVDQATAAQTIAELEAEVFTLEHLEKQARALVVSGQDRKWEELREILQNTPEM 498

Query: 62  IIEKANAAPIIVAYHFNSDL----ARLQKAFPQ--------GRTLDKDPCTIQE-WNEGK 108
           +        +I+       L     R++    +        G T  +D   +QE +   +
Sbjct: 499 LGPDGLQRKLIIFTEHRDTLNYLADRIRGLLGKREAVTMIHGSTHREDRRKVQEMFRTDR 558

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +     + G G+NLQ   N++V + L W+    +Q   RI      + G  +A  ++
Sbjct: 559 DTRVLLATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTQACHLW 612

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
            ++A  T +  V Q+L  K  I
Sbjct: 613 NMVAAETREGNVFQKLFEKLEI 634


>gi|134084700|emb|CAK47319.1| unnamed protein product [Aspergillus niger]
          Length = 1485

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 54   EKIKALEVII----EKANAAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCTIQEWN- 105
             KI  L   I    E    A  +V   + + L  L  A   F  G +       IQ +  
Sbjct: 1240 TKIDTLARHILWLREHDPGAKSVVFSQYKNFLEILANALSRFKIGFSSVDAKDGIQNFKS 1299

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +     H  +   GLNL    + +       +     Q I R+      + G  R  
Sbjct: 1300 DPAVECFLLHAKAHSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPT 1353

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             V+  +  +T+++ +     ++      ++   KK+  H
Sbjct: 1354 TVWMYLVSDTVEQSIYDLSVSRRLAH--IVQKEKKQEKH 1390


>gi|303288149|ref|XP_003063363.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226455195|gb|EEH52499.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2005

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 68   AAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP------LL 112
               +++   +           D A ++    +G    +    + E+ + K+       L+
Sbjct: 1864 DERVLIFIQYPDLMKQVSDVLDDANIKYLKLKGSV-HQQCAALDEFQKEKLRPGDARVLM 1922

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                     G NL    + +    L  + +      E   + R R+ G  + V V+ LIA
Sbjct: 1923 LLSRDESASGANLTTANHAIFVHPLETNTQYEYDASETQAIGRIRRYGQTKLVHVHRLIA 1982

Query: 173  QNTIDELVL 181
            ++TI+E + 
Sbjct: 1983 KDTIEEKIY 1991


>gi|126727279|ref|ZP_01743115.1| helicase [Rhodobacterales bacterium HTCC2150]
 gi|126703488|gb|EBA02585.1| helicase [Rhodobacterales bacterium HTCC2150]
          Length = 963

 Score = 58.4 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT D     ++ +      ++     S   G+NLQ+  ++L+ F L W+ +  +Q
Sbjct: 491 RISGSRTADMKAALVEAFKSSNKSIM-ISTESGAEGINLQF-CSVLINFDLPWNPQRIEQ 548

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLL 195
            I R       + G K  V V  ++  +N  +  + + L  K  + D + 
Sbjct: 549 RIGRC-----HRYGQKIDVTVVNMLNRKNHTEARIFELLNEKFKLFDGVF 593


>gi|326484972|gb|EGE08982.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1517

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
             A  IV     S L  L   F     G +   DP  I+ + E         H  +   GL
Sbjct: 1257 GAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECFLLHAKAHASGL 1316

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 1317 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQ 1369


>gi|302773700|ref|XP_002970267.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
 gi|300161783|gb|EFJ28397.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
          Length = 1029

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 26/161 (16%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI----------- 101
              +  L  + + AN   ++V   F +    L +     R   +D   +           
Sbjct: 821 TAFVMKLIELCQCANEK-VLVFGEFLAPFHLLLRMLELERGWSRDKEVVFLHGALVTEER 879

Query: 102 ----QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +N    +  +  A   +C  G+ L  G + +V     W+  +  Q I R     
Sbjct: 880 HELMDRFNAEGSEARVCLASIRACAEGITL-VGASRVVLLHPVWNPAQTNQAISR----- 933

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G KR VFVY L+ +  ++ +   R + K    + +  
Sbjct: 934 AFRLGQKRKVFVYRLVTE--VETVKNSRTKWKDFCSEAIFE 972


>gi|71029760|ref|XP_764523.1| DNA helicase [Theileria parva strain Muguga]
 gi|68351477|gb|EAN32240.1| DNA helicase, putative [Theileria parva]
          Length = 941

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 51/203 (25%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           S   K  QL             +       K +E I+E  N    I+  H    +  ++ 
Sbjct: 731 SLMAKLFQLTG-----------ESKTKGVCKYIEEILENQN--KFIIFAHHMFMMDAIED 777

Query: 87  ----------AFPQGRTLDKDPCTIQEWN--------EGKIP-------------LLFAH 115
                            ++     +  +         EGK+              +    
Sbjct: 778 TLRSKKVGYIRIDGSTKMNDRAKLVNLFQNTNESTKHEGKVDKVEDEDSPDYTVRVALLS 837

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQN 174
             SCG GLNL    + ++F  L+W      Q  +R+      + G K   + + YLIAQN
Sbjct: 838 LTSCGVGLNLT-SSSTVIFAELYWVPGVLLQAEDRV-----HRIGTKFNKININYLIAQN 891

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +++E++ + +  K       L+ 
Sbjct: 892 SVEEVMWKVINKKYKTVTSTLDG 914


>gi|296220828|ref|XP_002756502.1| PREDICTED: lymphoid-specific helicase isoform 4 [Callithrix
           jacchus]
          Length = 808

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +   Q  +R       + G  + V VY L+  NTID+ +++R   K  ++ L++
Sbjct: 667 NPQSDLQAQDRC-----HRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 717


>gi|261403402|ref|YP_003247626.1| helicase domain protein [Methanocaldococcus vulcanius M7]
 gi|261370395|gb|ACX73144.1| helicase domain protein [Methanocaldococcus vulcanius M7]
          Length = 994

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 30/162 (18%)

Query: 47  HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-------------- 90
           +     D KI AL  II +   N   I+V   +   L  LQ+  P+              
Sbjct: 379 NIIVKKDSKIDALAKIIAEHIRNNEKIVVFTEYVDTLKYLQENLPKYLDNYGINIDTNEI 438

Query: 91  ----GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G   +      +++ + GKI            GLNLQ   ++L+ +   W   + +
Sbjct: 439 LTLSGENKNLLENINKKFEDCGKI---LLATDVASEGLNLQI-ASVLINYDSPWSPIKLE 494

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           Q I R+      + G ++ V VY +   N +D  +L  L  K
Sbjct: 495 QRIGRVW-----RLGQEKDVSVYNIFLSNRMDLELLNNLYKK 531


>gi|327304455|ref|XP_003236919.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326459917|gb|EGD85370.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1515

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
             A  IV     S L  L   F     G +   DP  I+ + E         H  +   GL
Sbjct: 1257 GAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECFLLHAKAHASGL 1316

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 1317 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQ 1369


>gi|324510004|gb|ADY44188.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 456

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 20/133 (15%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
           E         K+  LE I+   + +   +++       L  +Q  F   R          
Sbjct: 314 EGEHLATSSGKMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKL 373

Query: 93  TLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             D     I  + +    +        + G GL L  G + ++F    ++ +   Q   R
Sbjct: 374 KADMRFTAIDNFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQNDIQAAAR 432

Query: 151 IGVTRQRQAGFKR 163
                  + G  +
Sbjct: 433 C-----HRIGQTK 440


>gi|296391289|ref|ZP_06880764.1| putative DNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 84

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A+ G G NL    N + F  L W   + +Q  +R       + G  R V V   + + TI
Sbjct: 2   AAAGTGNNLT-AANYVFFLGLPWTPGQQEQAEDR-----AYRNGQLRMVVVKIPLVEATI 55

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           DE + Q L  K  +   L+ 
Sbjct: 56  DEQLWQLLNAKRQVAQDLIE 75


>gi|302416787|ref|XP_003006225.1| E3 ubiquitin-protein ligase SHPRH [Verticillium albo-atrum VaMs.102]
 gi|261355641|gb|EEY18069.1| E3 ubiquitin-protein ligase SHPRH [Verticillium albo-atrum VaMs.102]
          Length = 1401

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASC 119
            E    A  IV   +   L  +  A  + R     +DK     +   +  +     H  + 
Sbjct: 1174 ESDPGAKSIVFSQYRDFLQVIGSALSRSRIGYTSIDKPNGVQRFKEDAGLECFLLHGRAQ 1233

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    + +       +     Q I R+      + G +    V+  + + T++E 
Sbjct: 1234 SSGLNLVNASH-VFLCEPLLNTAIELQAIARVD-----RIGQQHETTVWLYLIEGTVEES 1287

Query: 180  VLQRLRTKSTIQ 191
            +   L  K  +Q
Sbjct: 1288 IYN-LSVKRRLQ 1298


>gi|169615006|ref|XP_001800919.1| hypothetical protein SNOG_10656 [Phaeosphaeria nodorum SN15]
 gi|111060930|gb|EAT82050.1| hypothetical protein SNOG_10656 [Phaeosphaeria nodorum SN15]
          Length = 682

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
           +V   F +    ++     GR   ++ P    E++  G   ++       G GLN+    
Sbjct: 546 VVQIAFEAMYDPIECLRYDGREFAERRPAIQAEFDKSGGHKVMLMSRGVGGLGLNI-PSA 604

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL--QRLRTK 187
           N+++    WW  E   Q + R       + G KRAV    L A N+  E +   +    K
Sbjct: 605 NVIIQCCPWWKREWEVQAMGR-----AYREGQKRAVTYIKLTATNSHAE-IYKTKTRDRK 658

Query: 188 STIQDLLLNALKK 200
            T    ++ AL +
Sbjct: 659 HTYNSRVVKALTR 671


>gi|297301538|ref|XP_001094310.2| PREDICTED: lymphoid-specific helicase isoform 3 [Macaca mulatta]
          Length = 808

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 30/150 (20%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
             +  K   L+ ++ +       +++     S L  L            D C ++++N  
Sbjct: 594 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILM-----------DYCHLRDFNFS 642

Query: 108 KIPLLFAHPASCG--HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           ++    ++       H  N+              + +   Q  +R       + G  + V
Sbjct: 643 RLDGSMSYSEREKNMHSFNM----------DPEVNPQSDLQAQDRC-----HRIGQTKPV 687

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY L+  NT+D+ +++R   K  ++ L++
Sbjct: 688 VVYRLVTANTVDQKIVERAAAKRKLEKLII 717


>gi|295836817|ref|ZP_06823750.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295826220|gb|EDY44436.2| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 546

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               ++   F   L  L++   +       G T D++    +   +    +L ++PA+ G
Sbjct: 373 GKKTLIWTTFVRSLTTLERLLAKFGPASVYGGTPDREEQLRRFREDPSCMVLISNPATLG 432

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G++L    +  V+    +      Q ++RI        G + +V V  L A+ T+DE+V
Sbjct: 433 EGISLHQSVHDAVYVDRDFMAGRFLQSLDRIHRLGL-APGTETSVTV--LAARGTVDEVV 489

Query: 181 LQRLRTKSTIQDLLLN 196
             RL  K      +L+
Sbjct: 490 AARLDRKLEFMGAILD 505


>gi|254773730|ref|ZP_05215246.1| helicase domain-containing protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1136

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           ++  K LQ  + A+  D++   ++      H + +  L V I      P           
Sbjct: 474 TELSKILQ--DNALTTDKDGVPRKFIIFTEHRDTLDYLAVRIRSLLGKP----------- 520

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             +Q      R L++   T +        +L A   + G GLNLQ   +++V + L W+ 
Sbjct: 521 DAVQAIHGGVRRLERRVITEEFTKNRGCQILLA-TDAAGEGLNLQ-AAHLMVNYDLPWNP 578

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              +Q   RI      + G +    ++ L+A NT +  V  +L  K   Q
Sbjct: 579 NRIEQRFGRI-----HRIGQEEVCRLWNLVASNTREGDVFVQLLLKVEEQ 623


>gi|310831392|ref|YP_003970035.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386576|gb|ADO67436.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 816

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWN----EGKI 109
           I       II+   ++  L  +           +F +G    ++   I+ +         
Sbjct: 682 ITSNPENNIIIFSQYDFMLKLISVSLSQNGVSNSFVKGNVFQRN-KAIETFRGLRMNQSS 740

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++     +   G +L    N ++F       ++    IE   + R  + G K+ V+++ 
Sbjct: 741 KVIMLSLKNAASGTHLVE-ANHIIFVDPVDSTKDSVIDIENQAIARAFRIGQKKKVYIHR 799

Query: 170 LIAQNTIDELVL 181
           L+ ++TI+E + 
Sbjct: 800 LLIKDTIEENIY 811


>gi|253755095|ref|YP_003028235.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
 gi|251817559|emb|CAZ55306.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
          Length = 2281

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1912 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1971

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1972 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 2005


>gi|302660947|ref|XP_003022147.1| hypothetical protein TRV_03750 [Trichophyton verrucosum HKI 0517]
 gi|291186078|gb|EFE41529.1| hypothetical protein TRV_03750 [Trichophyton verrucosum HKI 0517]
          Length = 333

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68  AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
            A  IV     S L  L   F     G +   DP  I+ + E         H  +   GL
Sbjct: 75  GAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECFLLHAKAHASGL 134

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 135 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQ 187


>gi|302501520|ref|XP_003012752.1| hypothetical protein ARB_01003 [Arthroderma benhamiae CBS 112371]
 gi|291176312|gb|EFE32112.1| hypothetical protein ARB_01003 [Arthroderma benhamiae CBS 112371]
          Length = 333

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68  AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
            A  IV     S L  L   F     G +   DP  I+ + E         H  +   GL
Sbjct: 75  GAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECFLLHAKAHASGL 134

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q
Sbjct: 135 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQ 187


>gi|313889303|ref|ZP_07822954.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313122351|gb|EFR45439.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1555

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1186 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1245

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1246 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1279


>gi|327283199|ref|XP_003226329.1| PREDICTED: e1A-binding protein p400-like [Anolis carolinensis]
          Length = 3122

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +     +  Q     +    +    +    K++AL V+++K  +    +++       L 
Sbjct: 1832 AGPFLHQLQQFITPQLLQFPDLRLVQYDAGKLEALAVLLQKLKSEGRRVLILSQMILMLD 1891

Query: 83   RLQK----AFPQGRTLDK------DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
             L+      F     +D+         +++ +N  K I        S   G+NL    + 
Sbjct: 1892 ILEHFLNFHFLTYVRIDECANQEERQESMKTFNRDKRIFCAILSSHSRSTGVNLVE-ADT 1950

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +     +  E        + G  + + +Y L++ N+++E +L+
Sbjct: 1951 VVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSVEEKLLK 1996


>gi|324500290|gb|ADY40142.1| E3 ubiquitin-protein ligase SHPRH [Ascaris suum]
          Length = 1245

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 48   WKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------LDKD 97
             K     K+ A    L  I E+   A  +V     S +  +     +         + K 
Sbjct: 1060 VKGDASVKLDAVIRRLLSIHERDPWAKTLVFTSIPSIIPVISGLLQENNIPYRNYSVGKR 1119

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T+ E+  + KI +L         GLNL    NI +F     D  +  Q I RI     
Sbjct: 1120 QVTLAEFRLDPKIQVLVMPINQGARGLNLTVANNI-IFVEPQLDASQLAQAIGRID---- 1174

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + G  R + +++ +   +I+E +  R+      
Sbjct: 1175 -RIGQTRRMMIHHFVVYGSIEEHIHHRITDPQNT 1207


>gi|296134095|ref|YP_003641342.1| helicase domain protein [Thermincola sp. JR]
 gi|296032673|gb|ADG83441.1| helicase domain protein [Thermincola potens JR]
          Length = 469

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW-- 104
           K+  L+ I++K     I+V   +      + +   +           L ++     +W  
Sbjct: 300 KLYHLQAILQKHPGK-ILVFTEYMQTQFFIGRWLNELGINFIHFNGKLKRNQKEYTKWLF 358

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-R 163
                 ++     S   GLN Q+  N++V F L W+  + +Q I RI      + G    
Sbjct: 359 QNKDYRVMIC-TDSGSQGLNFQF-CNVIVNFDLPWNPMKVEQRIGRID-----RLGQTAD 411

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+VY  + Q+T++E +   L +K  +    +
Sbjct: 412 EVYVYNFVLQDTVEEKIFHILSSKIALFKECI 443


>gi|260789510|ref|XP_002589789.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
 gi|229274972|gb|EEN45800.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
          Length = 987

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDP-----CTIQEWNEG- 107
           L  + E+     +++       L  +     ++ +   R   + P       I ++N   
Sbjct: 867 LPEMAER--GDRVLLFSQLTMMLDIVEPYLKRRKYKYVRLDGQTPVTERLQLIDQYNNNT 924

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            I +      + G G+NL    N ++   + ++    +Q  +R       + G  +
Sbjct: 925 DIFIFLLSTRAGGLGINLT-SANTVILHDIDFNPYNDKQAEDRC-----HRVGQTK 974


>gi|157419748|gb|ABV55437.1| SNF2-related helicase [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 2278

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1909 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1968

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1969 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 2002


>gi|290976679|ref|XP_002671067.1| DEXH-box helicase [Naegleria gruberi]
 gi|284084632|gb|EFC38323.1| DEXH-box helicase [Naegleria gruberi]
          Length = 1385

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++    +  +   G   +      + G G  +    + ++F  L+W   + +Q  +R+  
Sbjct: 717 NRRQNLVNTFRTNGHCRVAILSIKAAGVGYTMTP-CSTVLFAELYWTPSDLRQAEDRV-- 773

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G   AV + YL+ ++T DE +   L+ K  +
Sbjct: 774 ---HRMGQTNAVSIKYLLGKDTFDEYLWPLLQKKLEV 807


>gi|146318616|ref|YP_001198328.1| SNF2 family protein [Streptococcus suis 05ZYH33]
 gi|145689422|gb|ABP89928.1| SNF2 family protein [Streptococcus suis 05ZYH33]
          Length = 2274

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|323127133|gb|ADX24430.1| SNF2 family protein [Streptococcus dysgalactiae subsp. equisimilis
            ATCC 12394]
          Length = 2274

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|301115138|ref|XP_002905298.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110087|gb|EEY68139.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 855

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI--ERIG 152
           +     +  ++ G I +L  +  +   G+NLQ   +++    + +      Q    E+  
Sbjct: 623 ETKSAHVSSFHSGDIQVLILNSLTSASGINLQVASHLIFLDPVGYSP---MQANTLEQQA 679

Query: 153 VTRQRQAGFKRA-VFVYYLIAQNTID----ELVLQRLRTKSTIQDLLLNALKKET 202
           + R  + G     V V  LIA++T++    + + +  +      D   +  +++ 
Sbjct: 680 IGRVLRMGQTNDLVTVVRLIAEDTVEATLYDDIHEATQKTIAADDSFFDGEREDA 734


>gi|253751738|ref|YP_003024879.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
 gi|251816027|emb|CAZ51647.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
          Length = 2274

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|76797967|ref|ZP_00780227.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
 gi|76586691|gb|EAO63189.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
          Length = 2271

 Score = 58.4 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|223932202|ref|ZP_03624206.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223899183|gb|EEF65540.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 2274

 Score = 58.0 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|225427685|ref|XP_002273814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 903

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGR---------------TLDKDPCTIQEWN-EGK 108
           +++   ++V   +   L  L+K   + +               + ++   +++ +N    
Sbjct: 722 QSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPD 781

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             + F    +CG G++L     +L+              + R  + R  + G K+ V VY
Sbjct: 782 ARVFFGSIKACGEGISLVGASRVLILD------VHLNPSVTRQAIGRAFRPGQKKKVHVY 835

Query: 169 YLIAQNTIDE 178
            L+A ++ +E
Sbjct: 836 KLVAADSPEE 845


>gi|160881051|ref|YP_001560019.1| SNF2-related protein [Clostridium phytofermentans ISDg]
 gi|160429717|gb|ABX43280.1| SNF2-related protein [Clostridium phytofermentans ISDg]
          Length = 660

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 83/257 (32%), Gaps = 63/257 (24%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAV-------------- 40
           + Y   +++    +     +  N        A+K ++ +Q A                  
Sbjct: 376 RIYDLIEKKYIESIIENKEDDLNDKFKKQLVAAKMIRLMQAATNPTLLRMPLKEFLYDED 435

Query: 41  -------YYDEEKHWKEVHDEK----------IKALEVIIEKANAAPII--VAYHFNSDL 81
                   +D+    K++ D K          +K L   I       +I         DL
Sbjct: 436 LSIDLLKNFDDTDLLKQILDYKDNEIPAKFIEVKKLVDSIISDGGKVVIWASFVKNIHDL 495

Query: 82  A-RLQKAFPQGRTLD-----------------KDPCTIQEWN--EGKIPLLFAHPASCGH 121
              L+    + + L                       ++++     +  ++ A+P +   
Sbjct: 496 KLYLENNGIKCQELYGAIPVEQEDMNSDNDTLTREKIVRDFQKENSEFKVIIANPFAVAE 555

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            ++L    +  ++    ++   + Q  +RI     +          YY++++++IDE++ 
Sbjct: 556 SISLHKSCHNAIYLERTFNAAHYMQSKDRIHRYGLKAGIETN---YYYILSKDSIDEIIH 612

Query: 182 QRLRTKSTIQDLLLNAL 198
           +RL  K      ++ ++
Sbjct: 613 ERLNLKERRMTEIMESM 629


>gi|296111469|ref|YP_003621851.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
 gi|295833001|gb|ADG40882.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
          Length = 616

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 30/184 (16%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT---- 93
           +Y D +         K  A   +I K  A    +IV   F   + ++Q+   +       
Sbjct: 426 LYLDMDVETMRTP--KFDAGMSLIRKLVAEGKKVIVWGMFVGTMRKVQRELLESGIEANL 483

Query: 94  ------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +     I  + +G +P+L ++PA+ G  ++L    +  V+F   ++L    Q 
Sbjct: 484 VYGDTPKESRVGLINNFRDGNVPVLISNPATLGESISLHQTVHDAVYFEYNFNLTFMLQS 543

Query: 148 IERIGVTRQRQAGFKRAVF--VYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALK 199
            +RI      + G     +   YYL+ +        ID+ V +RL+ K  I   +LNA+ 
Sbjct: 544 RDRI-----HRLGLPDNQYTRYYYLMTEGDHAHNGYIDQQVYERLKEKEII---MLNAID 595

Query: 200 KETI 203
            + +
Sbjct: 596 GDML 599


>gi|317145065|ref|XP_001819268.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1472

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 68   AAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
                ++   +   L  L      F  G +       I ++     I   F H  +   GL
Sbjct: 1247 GGKSVIFSQYKDFLEVLAIAFHRFKIGFSSVDSKDGISKFKSDSSIECFFLHARAHSSGL 1306

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  R   V+  +  +T++E + + 
Sbjct: 1307 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEESIYEL 1360

Query: 184  LRTKSTIQDLLLNALKKETI 203
              ++      ++   K E +
Sbjct: 1361 SVSRRLAH--IVQKEKAEPL 1378


>gi|310792778|gb|EFQ28239.1| DNA repair protein RAD8 [Glomerella graminicola M1.001]
          Length = 1481

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 27/193 (13%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAA 69
             C ++G    +  S +     L   N  +  D E     V   KI  +E II  E  +  
Sbjct: 1244 VCPVEGCQAFSQGSFAPWDTLLAKGNNEIDTDLE----AVPSSKILEIENIILDEVGDDE 1299

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAH--PA 117
             +++   +    + +      G             D+D  TI  + + +   +      +
Sbjct: 1300 KVLIFAAYAGIKSEIHTQLFDGVDDSIGVYMTDGGDQDSQTIDSFKKHQGKAVLIQSLMS 1359

Query: 118  SCGHGLNLQYGGNIL---VFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            S   G NL    +++   V F+   +   +  Q   R+      + G  R V +Y+L++ 
Sbjct: 1360 SESAGTNLTEANHVIFAGVLFTDSDNYTMYMNQAKGRVI-----RQGQTRKVAIYHLVSP 1414

Query: 174  NTIDELVLQRLRT 186
             T++  +  + + 
Sbjct: 1415 GTLEFDIFNQRQG 1427


>gi|171692877|ref|XP_001911363.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946387|emb|CAP73188.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1523

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 11/162 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            K  Q+ +          +    D  ++ L  +      A  I+   +   L  L  AF +
Sbjct: 1251 KLSQIKS-IDLPSSGPSYTTKVDTLLRHLLWLRSSDPGAKSIIFSQYKEFLEVLALAFKR 1309

Query: 91   GRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    DK   T    ++  + +      +   GLNL    ++ +      +     Q
Sbjct: 1310 YHIGYTSFDKPNGTTSFKSDPSVEVFLLSARAHSSGLNLVNASHVFI-CEPMLNTALELQ 1368

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             I R+      + G ++   V+  + + T++E +      K 
Sbjct: 1369 AIARVD-----RIGQEQETTVWLYLVEGTVEEGIYDLSVRKR 1405


>gi|326779112|ref|ZP_08238377.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326659445|gb|EGE44291.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 611

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAH 115
                    +V   F   L+ +++ F         G T D+     +   +    +L ++
Sbjct: 436 ANAEQGRKTLVWTTFVRSLSTMERMFAGYEPAVVHGGTPDRAEEIRRFREDPDCSVLLSN 495

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PA+ G G++L +  +  V+    +      Q ++RI        G +  V V  L ++ T
Sbjct: 496 PATLGEGISLHHVCHDAVYVDRDFMAGRFLQSLDRIHRLGL-APGTETNVTV--LASRGT 552

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +DE+V  RL  K      +L+
Sbjct: 553 VDEVVALRLEEKLEFMGRILD 573


>gi|67539206|ref|XP_663377.1| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4]
 gi|40743676|gb|EAA62866.1| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 54   EKIKALEVII----EKANAAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEWN- 105
             KI  L   I    E    A  IV   +   L  L    + F  G +   +   I+++  
Sbjct: 2131 TKIDTLARHILWLREHDPGAQSIVFSQYKGFLDYLANAFRRFKIGYSSVDESDGIEKFKK 2190

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I     H  +   GLNL    + +       +     Q I R+      + G  R  
Sbjct: 2191 DPGIECFLLHAKAHSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPT 2244

Query: 166  FVYYLIAQNTIDELVLQ 182
             V+  +  +T+++ +  
Sbjct: 2245 TVWMYLISDTVEKSIYD 2261


>gi|239982028|ref|ZP_04704552.1| hypothetical protein SalbJ_21517 [Streptomyces albus J1074]
 gi|291453879|ref|ZP_06593269.1| helicase domain-containing protein [Streptomyces albus J1074]
 gi|291356828|gb|EFE83730.1| helicase domain-containing protein [Streptomyces albus J1074]
          Length = 608

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 57  KALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGK 108
           +AL+++ E  A     +V   F   L  +++ F         G T D++    +   +  
Sbjct: 427 EALKIVSENAAAGRKTLVWTTFVRSLTTMERLFATFEPAVVHGGTPDREEQIRRFRTDPD 486

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L ++PA+ G G++L    +  V+    +      Q ++RI           R V V 
Sbjct: 487 CMVLLSNPATLGEGISLHRDCHDAVYVDRDFMAGRFLQSLDRIHRLGLAPDAETR-VTV- 544

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L A+ TIDE+V  RL  K      +L+
Sbjct: 545 -LAAERTIDEVVALRLEQKLEFMGKILD 571


>gi|326427519|gb|EGD73089.1| hypothetical protein PTSG_04803 [Salpingoeca sp. ATCC 50818]
          Length = 1649

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 34/161 (21%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
            E  H  +V +  ++AL  +  K       +++   F+  L  ++        +      I
Sbjct: 1473 EGGHSSKVCE-VLRALRRVFSKPTGHWNKVVIFSQFSDMLRLIR--------IGARENDI 1523

Query: 102  QEWNEGKIP----------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            + +   +                   L     S   GLN+    + +            Q
Sbjct: 1524 RVFEAYESTQFKRALDEFKKATEHCALLLDIKSGSQGLNILEAQH-VFLLEPILHPGVEQ 1582

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            Q + R+      + G K    V++ I  ++I+   L+ LRT
Sbjct: 1583 QAVARV-----HRIGQKHPTCVHHFIVTDSIESD-LEALRT 1617


>gi|156932814|ref|YP_001436730.1| hypothetical protein ESA_00610 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531068|gb|ABU75894.1| hypothetical protein ESA_00610 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1080

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 65/201 (32%), Gaps = 33/201 (16%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----KALEVIIEKANAAPIIVAYHF 77
                     K   +       D   H++  +  K+    K L  I +      +I+    
Sbjct: 872  GTGMLGLLHKLKLICAHPAVVDPAPHFR-DNSPKLNWLLKKLAEI-KATTKDKVIIFTEL 929

Query: 78   NSDLARLQKAF----------------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCG 120
                  LQ A                  +  + +     I  +       ++     + G
Sbjct: 930  RDLQRELQHAIYQKFGFRPVIINGDTSTKSHSQNSRQRLIDNFQSQPGFGIIILSTVAVG 989

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----TI 176
             G+N+Q   N ++ F+  W+  +  Q  +R       + G  + V+VYY   ++    T 
Sbjct: 990  FGVNVQK-ANHVIHFTRCWNPAKEDQATDR-----AYRIGQTKDVYVYYPTVRDPEITTF 1043

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +  + + L+ +  +   +L A
Sbjct: 1044 EVTLDELLKRRRALAKDMLCA 1064


>gi|15964256|ref|NP_384609.1| putative helicase protein [Sinorhizobium meliloti 1021]
 gi|15073432|emb|CAC41940.1| Helicase-DNA-binding protein [Sinorhizobium meliloti 1021]
          Length = 1170

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-----YDEEKHWKEVHDEKIKAL 59
            +   E    L+   I+   +A       +L    V         +       D K   L
Sbjct: 426 DELSAEEQESLEENLIDDATAAK---TVAELEAEIVILKGLEAQAKSVVASGQDRKWDEL 482

Query: 60  EVIIE--------KANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDP 98
             I++              II+       L  LQ                  G   D+  
Sbjct: 483 SRILQNNPEMRDASGRQRKIIIFSEHRDTLNYLQARIAGVLGNPDAIVTIHGGTHRDERR 542

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                +     + +L A   + G G+NLQ   N++V + L W+    +Q   RI      
Sbjct: 543 RLQALFRSDLDVRVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----H 595

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 596 RIGQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|326929550|ref|XP_003210925.1| PREDICTED: e1A-binding protein p400-like [Meleagris gallopavo]
          Length = 2997

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            +A    +  ++    +    +    +    K++AL V+++K  +    +++       L 
Sbjct: 1753 AAPHLHQLQRITTPQLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMILMLD 1812

Query: 83   RLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
             L+              +    ++    ++ +N  K I        S   G+NL    + 
Sbjct: 1813 ILELFLNFHFLTFVRIDEYANHEQRQELMKSFNRDKRIFCAILSSHSRSTGVNLVE-ADT 1871

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +     +  E        + G  + + +Y L++ N+++E +L+
Sbjct: 1872 VVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGNSVEEKLLK 1917


>gi|168028268|ref|XP_001766650.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162682082|gb|EDQ68503.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1180

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDP-CTIQEWNE-GKIPLL 112
           ++A    II+  H    L  +Q              G TL +D    +  +    ++ + 
Sbjct: 423 DEATREKIIIFAHHLKVLDTIQTFVQSKGVEYVRIDGSTLPQDRLKNVNRFRSQREVKVA 482

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL+       +VF  L     E  Q  +R       + G K +V +Y  +A
Sbjct: 483 IVGLQAGGVGLDF-SAAQSVVFVELPKSASEMLQAEDR-----AHRRGQKNSVNIYIFVA 536

Query: 173 QNTIDELVLQRLRT 186
           + T D+   Q L  
Sbjct: 537 KGTADDRHWQSLSR 550


>gi|322780853|gb|EFZ10082.1| hypothetical protein SINV_14375 [Solenopsis invicta]
          Length = 244

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 18/110 (16%)

Query: 68  AAPIIVAYHFNSDLARL-----QKAFPQGRTLDK-----DPCTIQEWN-EGKIPL-LFAH 115
              +++       L  L     ++ FP  R             +  +N EG         
Sbjct: 141 GHRVLIFSQMVKMLDILGEYLQRRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLS 200

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + G G+NL    + ++ F   W+ +   Q   R       + G K  V
Sbjct: 201 TRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQAR-----AHRIGQKNKV 244


>gi|302414736|ref|XP_003005200.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356269|gb|EEY18697.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 381

 Score = 58.0 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 49  KEVHDEKIKALEV-IIEKANAAPIIVAY-------HFNSDLARLQ-KAFPQGRTL--DKD 97
                 K+  L   IIE      IIV Y       +  S L  +Q +     +TL   + 
Sbjct: 106 VATASAKMTYLLDAIIEHYEHEKIIVFYENENTAWYIASMLDVIQIEHLIYAKTLTQKRK 165

Query: 98  PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N   K  ++        +GL++    + + F +   + +   Q I R      
Sbjct: 166 AQYINTFNNNTKFRVILMDITQAAYGLDM-RAASRIYFLNPVLNPQVEAQAIGR-----A 219

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R+   ++AV V  L+ + +++E+++   + K +  + +
Sbjct: 220 RRISQQKAVSVETLVLRGSLEEVII-MRKHKMSQAEHI 256


>gi|146422514|ref|XP_001487194.1| hypothetical protein PGUG_00571 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1263

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGLN+    + + F S  W      Q I+R       + G  +AV V  LI +NT++E
Sbjct: 1065 AAHGLNITAATH-VYFTSPVWLRSVEAQAIKR-----AHRIGQTKAVRVETLILKNTLEE 1118

Query: 179  LVLQRL----RTKSTIQDLLLN 196
             + ++           Q  +++
Sbjct: 1119 EIYRKRSQETEENDREQKYVID 1140


>gi|83767127|dbj|BAE57266.1| unnamed protein product [Aspergillus oryzae]
          Length = 1442

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 68   AAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
                ++   +   L  L      F  G +       I ++     I   F H  +   GL
Sbjct: 1217 GGKSVIFSQYKDFLEVLAIAFHRFKIGFSSVDSKDGISKFKSDSSIECFFLHARAHSSGL 1276

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  R   V+  +  +T++E + + 
Sbjct: 1277 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEESIYEL 1330

Query: 184  LRTKSTIQDLLLNALKKETI 203
              ++      ++   K E +
Sbjct: 1331 SVSRRLAH--IVQKEKAEPL 1348


>gi|322493527|emb|CBZ28815.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1232

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +   +++ +  +           + G G+NLQ   +++V     +      Q + R+   
Sbjct: 796 ERLTSVRRFREDPACLFFLLSIKAGGCGINLQ-AAHMVVLVDRDYTATNEDQALARV--- 851

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G +  V   YL   +  ++ V QR   K+  +  ++N
Sbjct: 852 --YRIGQRYTVRAVYLATTDASEQRVAQRAAAKNKPRQAIIN 891


>gi|146320818|ref|YP_001200529.1| DNA methylase [Streptococcus suis 98HAH33]
 gi|145691624|gb|ABP92129.1| DNA methylase [Streptococcus suis 98HAH33]
          Length = 308

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 17  DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 76

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 77  RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 110


>gi|23503224|gb|AAC43199.2| similar to Swiss-Prot Accession Number P32333, yeast helicase
           protein [Mycoplasma genitalium]
          Length = 72

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +E     R  + G  + V VY +IA+NTI+E V Q    K  +
Sbjct: 4   AVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQEL 47


>gi|312863051|ref|ZP_07723289.1| helicase C-terminal domain protein [Streptococcus vestibularis
           F0396]
 gi|311100587|gb|EFQ58792.1| helicase C-terminal domain protein [Streptococcus vestibularis
           F0396]
          Length = 931

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 562 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 621

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 622 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 655


>gi|239611704|gb|EEQ88691.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1503

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      +  ++  I     H  +   GL
Sbjct: 1250 GAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECFLLHAKAHASGL 1309

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1310 NLIDATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEECIYD 1362


>gi|209523622|ref|ZP_03272176.1| helicase domain protein [Arthrospira maxima CS-328]
 gi|209496027|gb|EDZ96328.1| helicase domain protein [Arthrospira maxima CS-328]
          Length = 1175

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 43/221 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K + E   DL   +       ++  +  QL   A     ++  +   D K + L  ++E
Sbjct: 440 EKIETE-VVDLATASRTVQELQTEIERLRQLEELA-----QRVRRSGKDCKWEQLSKVME 493

Query: 65  --------KANA---------APIIVAYHFNSDLARLQKAFPQ--GRT-----------L 94
                     N            +++       L  L+       GR             
Sbjct: 494 NEIFAFPNPQNGDHEPGQKALRKLVIFTEHRDTLNYLRDRIKTLLGRPEAVVTIHGSMGR 553

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+     +++ +     +     + G G+NLQ   +++V + L W+    +Q   RI   
Sbjct: 554 DERKKAEEDFKQDVTVQVLVATDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI--- 609

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLL 194
              + G      ++ L+A  T +  V   L  K  I Q+ L
Sbjct: 610 --HRIGQTEVCHLWNLVAGETREGDVYLSLLRKLEIEQNAL 648


>gi|118382598|ref|XP_001024455.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89306222|gb|EAS04210.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 413

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 19/139 (13%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNE-GKIPLLFAHP 116
              +I+   F S L  LQK                        I+ ++E  +   +    
Sbjct: 209 KEKVIIYSQFLSFLTYLQKVLNDRDVRYTRLDGTMNKKDRATAIKTFSEQSEFTAILISL 268

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLNL    N +     W++      +               + V V   I +++I
Sbjct: 269 KAGAFGLNL-VAANHVFICDPWYNPAIEVFLSANNI------IRQTKRVQVINFIMESSI 321

Query: 177 DELVLQRLRTKSTI-QDLL 194
           +E +LQ  + K ++ Q+ L
Sbjct: 322 EERILQCQKKKRSLIQNTL 340


>gi|310792552|gb|EFQ28079.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1457

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEWNEGKIPLLFAHPASC 119
            E    A  IV   + S L  L  AF + +    T+D+     +   +  +     H  + 
Sbjct: 1252 ESDPGAKSIVFTQYKSFLEILGAAFDRYKIGFSTIDRPNGITRFKEDPGVECFMLHGRAN 1311

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    + +       +     Q I R+      + G K    V+  + + +++E 
Sbjct: 1312 SSGLNLVNASH-VFLCEPLLNTALELQAIARVD-----RIGQKNETTVWLYLIEGSVEES 1365

Query: 180  VLQR 183
            +   
Sbjct: 1366 IYNL 1369


>gi|145347826|ref|XP_001418362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578591|gb|ABO96655.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1432

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 67   NAAPIIVAYHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            + A +IV   ++  L  ++KA       F +G +  K    I  +  +    +L      
Sbjct: 1248 DDAKMIVFSEWDDVLDVVEKAMRANEIRFVRGVSGPKFRDVIDTFKHDAACNVLLLPLKR 1307

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGLNL    ++L+      D     Q I+R+      + G  R   V+    ++TI+E
Sbjct: 1308 GAHGLNLTEAQHVLLL-EPVLDPGMEAQAIKRVD-----RIGQTRPTCVHRFFIRDTIEE 1361

Query: 179  LVLQRLRTKSTIQDLLLNAL 198
             V    R ++     + + +
Sbjct: 1362 NVHNFSRQRADAMSDIASDV 1381


>gi|257052779|ref|YP_003130612.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691542|gb|ACV11879.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 952

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 46  KHWKEVHDEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQK----------------- 86
                  D K++ L    +  + N+   I+   +   L  L++                 
Sbjct: 472 DKVTPTRDSKLQKLLDQTLPARFNSGGTIIFTKYIDTLEYLEEGIEEFLEENHPDVELYT 531

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T ++D    +++ +    +          G+NLQY  N ++ + L W+    +Q
Sbjct: 532 LHGKLNTAERDER-FEQFADADRGV-LVSTDVISEGMNLQYAANQVIHYELPWNPNRLEQ 589

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R+    Q++      VF+  ++  + +D  VL +L  K+
Sbjct: 590 RNGRVDRYGQKR----DKVFIRTMVVDDPMDRTVLTKLIKKA 627


>gi|220907512|ref|YP_002482823.1| helicase domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219864123|gb|ACL44462.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 1194

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
           +  K LQ  +G   +D   H +++     H + +  L   I      P  +         
Sbjct: 488 ELSKLLQ--SGTEMFDAGGHRRKLVIFTEHRDTLNYLTERIGTLLGRPEAIV-------- 537

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +           K     +   + K+ +L A   + G G+NLQ   +++V + L W+  
Sbjct: 538 -IIHGGMGRDERKKAEEGFK--QDIKVEVLVA-TDAAGEGINLQR-AHLMVNYDLPWNPN 592

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLL 194
             +Q   RI      + G      ++ L+A+ T +  V   L  K  I Q  L
Sbjct: 593 RLEQRFGRI-----HRIGQTEVCHLWNLVAEETREGDVYLSLLKKLEIEQKAL 640


>gi|56475568|ref|YP_157157.1| ATP-dependent helicase [Aromatoleum aromaticum EbN1]
 gi|56311611|emb|CAI06256.1| ATP-dependent helicase [Aromatoleum aromaticum EbN1]
          Length = 980

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 91  GRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T  +    ++ +   + P+ L         GLNL Y  + LV F L W L   QQ   
Sbjct: 486 GMTDTEQQSIVERFGRKEDPIRLLLCSDVASEGLNLHYFCHRLVHFDLPWSLMVFQQRNG 545

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           R+      + G      + YL  +  I     D  +L+ L+ K    +
Sbjct: 546 RVD-----RYGQTHQPQIIYLFTETRIQRVKGDLRILEILQEKDEQAN 588


>gi|83950945|ref|ZP_00959678.1| helicase [Roseovarius nubinhibens ISM]
 gi|83838844|gb|EAP78140.1| helicase [Roseovarius nubinhibens ISM]
          Length = 912

 Score = 57.6 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E+     +I         A + +AF       +D   I                + G G
Sbjct: 443 VERHKGTSVISGSKAADTKAAIVEAF-------RDDADI-----------LIATEAGGEG 484

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVL 181
           +NLQ+  ++LV F L W+ +  +Q I R+      + G K  V V   I + N  DE V 
Sbjct: 485 VNLQF-CSLLVNFDLPWNPQRVEQRIGRV-----HRYGQKCDVVVVNFINRSNRADERVF 538

Query: 182 QRLRTKSTIQDLLLNA 197
           + L  K  + D +  A
Sbjct: 539 ELLEEKFALFDGVFGA 554


>gi|261377777|ref|ZP_05982350.1| helicase/SNF2 domain protein [Neisseria cinerea ATCC 14685]
 gi|269146067|gb|EEZ72485.1| helicase/SNF2 domain protein [Neisseria cinerea ATCC 14685]
          Length = 943

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +DK    I  + N+ KI +      S   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 479 VDKRTALIDAFKNQAKIMIA---TESAAEGVNLQF-CSLLINYDLPWNPQRIEQRIGRC- 533

Query: 153 VTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   +  +N  D  VL+ L  K  + D +  A
Sbjct: 534 ----HRYGQKSDVVVINFLNTRNDADRRVLELLTDKFKLFDGVFGA 575


>gi|320530347|ref|ZP_08031412.1| protein, SNF2 family [Selenomonas artemidis F0399]
 gi|320137407|gb|EFW29324.1| protein, SNF2 family [Selenomonas artemidis F0399]
          Length = 1167

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 26/188 (13%)

Query: 17  GENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            + I    +  + +K L+ +A+       ++ W E+  + ++    + E       ++  
Sbjct: 446 AQTIAELEAEIRMLKNLEHMADSVRQSGTDRKWDEL-SKLLQDDATMFEGDGTREKLII- 503

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTI----------------QEWNEGKIPLLFAHPASC 119
            F      L+    + R+L      +                + + + K   +     + 
Sbjct: 504 -FTEHRDTLRYLTDKIRSLLGREEAVVTIHGGMLRDDRCKVEELFKQDKEVRILIATDAA 562

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ   +++V + L W+    +Q   RI      + G      ++ L+++ T + +
Sbjct: 563 GEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVSKETREGM 616

Query: 180 VLQRLRTK 187
           V QRL  K
Sbjct: 617 VFQRLFDK 624


>gi|225434275|ref|XP_002275596.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 944

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 65  KANAAPIIVAYHFNSDLARLQKA------FPQGRTL---------DKDPCTIQEWN-EGK 108
           ++    ++V   +   L  L+K       +  G+ +         ++   +++ +N    
Sbjct: 763 QSAGEKLLVFSQYLLPLRFLEKLTMKVNGWSSGKEIFVISGESSSEQREWSMERFNTSPD 822

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             + F    +CG G++L     +L+              + R  + R  + G K+ V VY
Sbjct: 823 ARVFFGSIKACGEGISLVGASRVLILD------VHLNPSVTRQAIGRAFRPGQKKKVHVY 876

Query: 169 YLIAQNTIDE 178
            L+A ++ +E
Sbjct: 877 KLVAADSPEE 886


>gi|85085403|ref|XP_957501.1| hypothetical protein NCU04424 [Neurospora crassa OR74A]
 gi|28918593|gb|EAA28265.1| predicted protein [Neurospora crassa OR74A]
          Length = 405

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 15/165 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
           LQ  +  V   E      +  + I     I         + +    +   ++ +A    +
Sbjct: 234 LQPGSHFVNAGESPDPTGLLGDAIADTIDINSSLQTD--LFSTKLKAVRKQVLEAGTGTK 291

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + +    I+ +  + +  +L     +   GLNL    ++ V     W+     Q I R 
Sbjct: 292 HISERTRLIRTFQGDPQAFILIMSVGTGAVGLNLTAASHVHV-VEPHWNPSVEAQAIAR- 349

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  + V V   I + T+++        K T+  L  +
Sbjct: 350 ----AVRMGQTKNVLVTRYIMKRTVED------TKKQTLAKLTFD 384


>gi|297739847|emb|CBI30029.3| unnamed protein product [Vitis vinifera]
          Length = 1695

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 64/184 (34%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
           ++T++ +Q   G                K++ L V++ K  +     ++       L  L
Sbjct: 798 TETLRLIQFDCG----------------KLQELAVLLRKLKSEGHRALIFTQMTKMLDVL 841

Query: 85  Q---------KAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +              G T  ++  T+ Q +N   KI +      S               
Sbjct: 842 EAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFIFILSTRS--------------- 886

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                                R  + G  R V +Y LI+++TI+E +L++   K  + DL
Sbjct: 887 --------------------DRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDL 926

Query: 194 LLNA 197
           ++ +
Sbjct: 927 VIQS 930


>gi|312877476|ref|ZP_07737438.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795732|gb|EFR12099.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 337

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 22/149 (14%)

Query: 53  DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           + K+  L+ +I++         ++V       L  L +   +          G  +D+  
Sbjct: 163 ETKLVRLKEVIDQERIRETGTKLLVFTESRDTLEYLAEKLKEWGYAVVTIHGGMNMDERI 222

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               E+ + K  ++ A   + G G+NLQ+   ++V + + W+    +Q + RI      +
Sbjct: 223 RAEHEF-KNKAQVMVA-TEAAGEGINLQF-CWLMVNYDIPWNPNRLEQRMGRI-----HR 274

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G +  V +Y L++ +T +  +LQ+L  K
Sbjct: 275 YGQQSEVHIYNLVSGDTKEGQILQKLFQK 303


>gi|323449667|gb|EGB05553.1| hypothetical protein AURANDRAFT_17570 [Aureococcus anophagefferens]
          Length = 76

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      S G GLNL    N+L       D    +Q + R+      + G  R V V  
Sbjct: 5   SVCLLTVRSAGVGLNLTN-ANVLCLCEPALDAAPEEQAVMRV-----HRIGQTRPVTVLK 58

Query: 170 LIAQNTIDELVLQRLRTK 187
             A  T+D  VL R   +
Sbjct: 59  FFAAGTVDARVLARRERR 76


>gi|291530902|emb|CBK96487.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2598

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L    A CG G N+Q     L      W   + +Q   RI     RQ      V
Sbjct: 2261 KGDVRVLLGSTAKCGAGTNVQDKLIALHHLDCPWRPADLEQREGRII----RQGNQNDKV 2316

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++Y  + ++T D  + Q +  K      ++ +
Sbjct: 2317 YIYRYVTKDTFDAYLYQIIENKQKGISQIMTS 2348


>gi|190890732|ref|YP_001977274.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
           652]
 gi|190696011|gb|ACE90096.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
           652]
          Length = 1324

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           RT D     +  + +EG+I +      +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 483 RTADMRSALVDYFRDEGQIMIA---TEAGAEGINLQF-CSLVVNYDLPWNPQRVEQRIGR 538

Query: 151 IGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   I  +N  D+ V Q L  K  + + +  A
Sbjct: 539 C-----HRYGQKHDVVVVNFINRKNEADQRVYQLLSEKFRLFEGVFGA 581


>gi|121709908|ref|XP_001272570.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400720|gb|EAW11144.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1473

 Score = 57.6 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 36   ANGAVYYD-EEKHWKEVHD--------EKIKALEVII----EKANAAPIIVAYHFNSDLA 82
            +N  +Y D      KE+ +         KI  L   I    E    A  I+   + + L 
Sbjct: 1212 SNNFIYADISSGTLKEIKNIDLDGSFGTKIDTLARHILWLREHDPGAKSIIFSQYKTFLE 1271

Query: 83   RLQKAFPQGRTLDKD---PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             L  AF + +           I+ +  +  I   F H  +   GLNL    + +      
Sbjct: 1272 VLGTAFARFKIGYSSIDYADGIERFKSDPAIECFFLHAKAQSSGLNLVNATH-VFLCEPL 1330

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR----------LRTKS 188
             +     Q I R+      + G  R   V+  +  +T+++ +              + K+
Sbjct: 1331 VNTAIELQAIARV-----HRIGQHRPTTVWMYLVSDTVEQSIYDLSVSRRLSHIFQKEKT 1385

Query: 189  TIQDL 193
              Q  
Sbjct: 1386 EAQGA 1390


>gi|227829955|ref|YP_002831734.1| helicase domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227456402|gb|ACP35089.1| helicase domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 895

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-------------RTLDK 96
            D ++KAL  ++         +I+   +      +                     T+++
Sbjct: 378 SDSRVKALINLVGTHLNKGDKVIIFTEYKDTANYILGKLKDALNLTDREIKVVTSVTINQ 437

Query: 97  DPCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I+ W E K   +         GLNLQ   N+++ + +   +   +Q   R+    
Sbjct: 438 EGIDRIKGWLESKESKVLIATDVASEGLNLQ-SANVIIHYEIPLSIVRFEQRNGRVW--- 493

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +    + V++YY+  +  +++ +L+    K
Sbjct: 494 --RLKQTKPVYIYYISLKIPLEQALLENYYNK 523


>gi|255544007|ref|XP_002513066.1| conserved hypothetical protein [Ricinus communis]
 gi|223548077|gb|EEF49569.1| conserved hypothetical protein [Ricinus communis]
          Length = 1322

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPAS 118
              +++   F   +  +++                       ++  +      L      S
Sbjct: 1154 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGLYSPMHSSNKMKSLATFQHDATCLALLMDGS 1213

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  + +      WD    +Q+I R       + G  R V V  L  + TI+E
Sbjct: 1214 AALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPVQVETLAMRGTIEE 1267

Query: 179  LVLQRLRTKSTIQDLLLNALKK 200
             +L+ L+     + LL    +K
Sbjct: 1268 QMLEFLQDADECRKLLKEEFRK 1289


>gi|42567734|ref|NP_196398.2| SNF2 domain-containing protein / helicase domain-containing protein
           / HNH endonuclease domain-containing protein
           [Arabidopsis thaliana]
 gi|332003824|gb|AED91207.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1190

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 16  QGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----------- 63
           +  ++ A NS    + K  QL     Y       +++   K+ A    +           
Sbjct: 491 EAGHVNAENSDGPNSDKENQLCGKLSY-------QQLGIAKLSAFREWLSLHPLLSGLDY 543

Query: 64  --EKANA----APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQEWN-E 106
             E+ +       ++V  H +  L  +Q+             G TL +D    +Q +   
Sbjct: 544 TPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFS 603

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ +      + G GL+     N +VF  L        Q  +R       + G   AV 
Sbjct: 604 SEVKIAIIGVEAGGVGLDFSAAQN-VVFLELPKTPSLLLQAEDR-----AHRRGQTSAVN 657

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           VY   A++T+DE   Q L  K
Sbjct: 658 VYIFCAKDTMDESNWQNLNKK 678


>gi|10176715|dbj|BAB09945.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1178

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 16  QGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----------- 63
           +  ++ A NS    + K  QL     Y       +++   K+ A    +           
Sbjct: 479 EAGHVNAENSDGPNSDKENQLCGKLSY-------QQLGIAKLSAFREWLSLHPLLSGLDY 531

Query: 64  --EKANA----APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQEWN-E 106
             E+ +       ++V  H +  L  +Q+             G TL +D    +Q +   
Sbjct: 532 TPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFS 591

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ +      + G GL+     N +VF  L        Q  +R       + G   AV 
Sbjct: 592 SEVKIAIIGVEAGGVGLDFSAAQN-VVFLELPKTPSLLLQAEDR-----AHRRGQTSAVN 645

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           VY   A++T+DE   Q L  K
Sbjct: 646 VYIFCAKDTMDESNWQNLNKK 666


>gi|317055081|ref|YP_004103548.1| SNF2-like protein [Ruminococcus albus 7]
 gi|315447350|gb|ADU20914.1| SNF2-related protein [Ruminococcus albus 7]
          Length = 305

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY 41
           + Y + +R+L       +I+A N+AS + K LQ+ANGAV 
Sbjct: 259 RLYDQMKRDLIIPTDDGDIDAANAASLSNKLLQMANGAVM 298


>gi|163796533|ref|ZP_02190492.1| superfamily II DNA/RNA helicase, SNF2 family protein [alpha
           proteobacterium BAL199]
 gi|159178093|gb|EDP62638.1| superfamily II DNA/RNA helicase, SNF2 family protein [alpha
           proteobacterium BAL199]
          Length = 1198

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +L A   + G G+NLQ   +++V + L W+    +Q   RI      + G     
Sbjct: 584 DPEVQVLLA-TDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVC 636

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            ++ L+A+ T +  V ++L  K
Sbjct: 637 HLWNLVAEETREGDVYRKLLEK 658


>gi|115387363|ref|XP_001211187.1| hypothetical protein ATEG_02009 [Aspergillus terreus NIH2624]
 gi|114195271|gb|EAU36971.1| hypothetical protein ATEG_02009 [Aspergillus terreus NIH2624]
          Length = 1162

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 35/136 (25%), Gaps = 44/136 (32%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKI-------- 109
                +V   F S L  +     +                    + ++N+ +         
Sbjct: 1020 GTKSVVFSQFTSFLDLISPQLTKAGITHVRLDGSMSHKARAEVLAKFNKTETFNQEEIED 1079

Query: 110  --------------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                                 +L     + G GLNL    N+ +    WW      Q I+
Sbjct: 1080 EEGIMTPRKKASTSQTEPSPQVLLISLRAGGVGLNLTTASNVFMM-DPWWSFAIEAQAID 1138

Query: 150  RIGVTRQRQAGFKRAV 165
            R+      + G  R +
Sbjct: 1139 RV-----HRMGQLRDI 1149


>gi|302554146|ref|ZP_07306488.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471764|gb|EFL34857.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1072

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 21/175 (12%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
             Q+   A+  D      +  D   K L    I   N    ++   +    A + K    
Sbjct: 426 LRQI--EAILADRGYEPSKWRDLTAKCLAANGIHPGNGEQAVIFTEYADSAAWIVKRLAD 483

Query: 91  ---------GRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    GR    D    +  +   +  +      +   G++LQ   ++LV + + W 
Sbjct: 484 EGYSARMYSGRQRSADRDEARSAFMRSEYQI-IVTTDAGNEGIDLQ-AAHVLVNYDIPWS 541

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKSTIQDLL 194
           L   +Q + RI      + G  R VF+Y L+A +T + E +   L    T  + L
Sbjct: 542 LVRLEQRMGRI-----HRVGQTRDVFLYNLVAVDTREGETLHTLLERFVTAANEL 591


>gi|154278960|ref|XP_001540293.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412236|gb|EDN07623.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1538

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      +   +  +     H  +   GL
Sbjct: 1176 GAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVERFKTDPSVECFLLHAKAHSSGL 1235

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G K+   V+  +  ++++E +  
Sbjct: 1236 NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQKQETTVWMYLVSDSVEESIYD 1288


>gi|261334703|emb|CBH17697.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 952

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 17/165 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYH---------FNSDLARLQKAFPQGRTLD 95
             +W E   EKI  +  ++   +   ++ A+H         + +D          G  ++
Sbjct: 439 SDNWIE-SREKILDIVDLLLCKHGKIVLFAHHLNLLDCLTTYVNDKKVTWIRIDGGTPMN 497

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  +N+G + +      +C  G+ L  G +  +F  L  D+   QQ  +R+    
Sbjct: 498 SRVELLSRFNDGDVSVALVGITACAVGVRLT-GASCALFAELPPDIGWMQQAEDRL---- 552

Query: 156 QRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNALK 199
             + G K  V +YY+I+  +  D     RL         + + +K
Sbjct: 553 -HRPGQKNHVILYYIISTGSFFDGAQFSRLSRCFQAVRRITDGVK 596


>gi|302559406|ref|ZP_07311748.1| SNF2 family helicase [Streptomyces griseoflavus Tu4000]
 gi|302477024|gb|EFL40117.1| SNF2 family helicase [Streptomyces griseoflavus Tu4000]
          Length = 608

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 15/150 (10%)

Query: 57  KALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGK 108
           +AL ++ E A+     +V   F   +  LQ+           G T D++    +   +  
Sbjct: 427 EALAIVAENASLGRKTLVWASFVRSITSLQRLLAPFQPAAVHGGTQDREAELRRFREDPA 486

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV--F 166
             +L ++PA+ G G++L    +  V+    +      Q ++RI      + G    V   
Sbjct: 487 CSVLISNPATLGEGISLHQDCHDAVYIDRDFQAGRFLQSLDRI-----HRLGLSPDVETR 541

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  L A  T+DE+V  RL  K      +L+
Sbjct: 542 ITVLAAAGTVDEIVAMRLAKKLEFMGRILD 571


>gi|19115578|ref|NP_594666.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|74698449|sp|Q9UTL9|YIV5_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C144.05
 gi|6138896|emb|CAB59685.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 1375

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL------DKDPCTIQEW-NEGKIPLLFAHPASCGHG 122
             ++V   +   L  L K+F     +            ++ +  E  + +L  H  S   G
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSKNTCLKRFKEERSLQVLTLHARSQSSG 1265

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            L L    + +       +     Q I R+      + G  R  FVYY I ++T++  +L 
Sbjct: 1266 LTLTNATH-VFMCEPLLNSGIEMQAISRV-----HRIGQTRPTFVYYYIVEDTVEGHILN 1319

Query: 183  RLRTKSTIQDLL 194
               TK    D L
Sbjct: 1320 LSLTKHEQLDKL 1331


>gi|224101971|ref|XP_002312496.1| hypothetical protein POPTRDRAFT_657056 [Populus trichocarpa]
 gi|222852316|gb|EEE89863.1| hypothetical protein POPTRDRAFT_657056 [Populus trichocarpa]
          Length = 87

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +F  L ++ +     I+R       + G  + V +Y ++ + T+DE V +  + K  +
Sbjct: 1   YCIFPDLDFNPQ-----IDRQVEDHCHRIGHTKPVTIYRMVTRGTVDETVDEMAKWKLVL 55

Query: 191 QDLLLNA 197
              +L++
Sbjct: 56  DAAVLDS 62


>gi|297599954|ref|NP_001048207.2| Os02g0762800 [Oryza sativa Japonica Group]
 gi|255671267|dbj|BAF10121.2| Os02g0762800 [Oryza sativa Japonica Group]
          Length = 879

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    + ++N+      +      + G GLNL  GGN L+ F   W+    
Sbjct: 595 RLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNPAND 653

Query: 145 QQMIERI 151
           +Q+ +R 
Sbjct: 654 KQVYQRQ 660


>gi|222623720|gb|EEE57852.1| hypothetical protein OsJ_08484 [Oryza sativa Japonica Group]
          Length = 952

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    + ++N+      +      + G GLNL  GGN L+ F   W+    
Sbjct: 635 RLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNPAND 693

Query: 145 QQMIERI 151
           +Q+ +R 
Sbjct: 694 KQVYQRQ 700


>gi|156564053|ref|YP_001429796.1| RecQ helicase [Bacillus phage 0305phi8-36]
 gi|154622750|gb|ABS83630.1| RecQ helicase [Bacillus phage 0305phi8-36]
          Length = 624

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSD---LAR-LQKAFPQGRTLDKDPCTIQE-----WNE 106
           I+ ++ I++  N   +++          L R + K     R +     +++E     +N 
Sbjct: 452 IQRVQEIVD--NGHKVVIFVESKRMTVMLHREISKFTRAVRYVGGLKDSVRERRKMKFNT 509

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-V 165
                +     +   GLNLQ  G  L+ + L  +    +Q   RI     R+       V
Sbjct: 510 DPSCRVLIATGAGSTGLNLQ-AGRYLINYDLPHNPAIWEQRKYRI-----RRLDSTHDRV 563

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +  LI Q  +DE + +RL  K    D  L 
Sbjct: 564 HIINLINQGIVDEQMRERLDDKQASFDATLE 594


>gi|46805904|dbj|BAD17217.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
          Length = 912

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    + ++N+      +      + G GLNL  GGN L+ F   W+    
Sbjct: 595 RLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNPAND 653

Query: 145 QQMIERI 151
           +Q+ +R 
Sbjct: 654 KQVYQRQ 660


>gi|317037762|ref|XP_001399104.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1156

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 54   EKIKALEVII----EKANAAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCTIQEWN- 105
             KI  L   I    E    A  +V   + + L  L  A   F  G +       IQ +  
Sbjct: 911  TKIDTLARHILWLREHDPGAKSVVFSQYKNFLEILANALSRFKIGFSSVDAKDGIQNFKS 970

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +     H  +   GLNL    + +       +     Q I R+      + G  R  
Sbjct: 971  DPAVECFLLHAKAHSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPT 1024

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             V+  +  +T+++ +     ++      ++   KK+  H
Sbjct: 1025 TVWMYLVSDTVEQSIYDLSVSRRLAH--IVQKEKKQEKH 1061


>gi|256819717|ref|YP_003140996.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256581300|gb|ACU92435.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 753

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE- 103
           +K  +   D++I+A+  I+  ++ A  IV  + N +  ++ +  P    ++    T  + 
Sbjct: 272 QKELRNTLDQRIEAVAEIVNNSDEA-FIVWVNQNEEEKKVLELIPDAVAVNGSEKTEVKE 330

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                +  G+  +L         G+N Q   +  +F SL +  E   Q + R       +
Sbjct: 331 KKLLGFANGEFRVLVTKKKIAQFGMNFQN-CHNQIFASLDFSFEGTYQAVRR-----SYR 384

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G  + V +Y  I  +T+ E V Q    K      + + + K
Sbjct: 385 FGQTKEVNIY-FITTDTM-ENVKQTRERKEQQFKEMQDQMNK 424


>gi|225680757|gb|EEH19041.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb03]
          Length = 1432

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D    T +   +  I     H  +   GL
Sbjct: 1188 GAKSIVFSQYKPFLGILARAFSHFKIGFSSIDYHDGTERFKRDPSIECFLLHAKAHSSGL 1247

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1248 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYD 1300


>gi|260905079|ref|ZP_05913401.1| helicase, putative [Brevibacterium linens BL2]
          Length = 1009

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 56  IKALEVIIEKANAAPIIVAYH--------FNSDLARLQKAFPQGRTLD----------KD 97
           I+ L+ I E    A I V           +  +   +      G T              
Sbjct: 831 IEVLDEIREADEKAIIFVISKTVQTRLAVWLHERYGITPKIVNGETKAVASGSKKANLTR 890

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I ++       L+   P + G GL +  G N  +     W+  +  Q  +RI     
Sbjct: 891 KGIITDFEAQSGFNLIIMSPLAVGVGLTV-VGANHAIHLERHWNPAKEAQATDRI----- 944

Query: 157 RQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G  R V VY  +A +    + D  +   LR+K+ ++D ++   K E
Sbjct: 945 YRIGQTRPVHVYLPLANHPTLSSFDVNLDALLRSKTDLKDAVVVPGKVE 993


>gi|55376574|ref|YP_134426.1| putative DEAD/H helicase [Haloarcula marismortui ATCC 43049]
 gi|55229299|gb|AAV44720.1| putative DEAD/H helicase [Haloarcula marismortui ATCC 43049]
          Length = 1212

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 29/158 (18%)

Query: 65  KANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKD-----------------PCTIQE 103
           ++    II+   ++  L  +++      P   T                         ++
Sbjct: 788 QSARDNIIIFTQYHDTLEHIRETLTDTHPNVGTYSGGGGMQYDETTGEWVNVGKEAIKRD 847

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G   +L     S   GLNLQ   + L+ F L W+    +Q I RI      + G K 
Sbjct: 848 FTDGDTNILIC-TDSASEGLNLQT-ADALINFDLPWNPMRVEQRIGRID-----RIGQKN 900

Query: 164 AVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V  +     +++ID  + + L  +  + + ++  ++ 
Sbjct: 901 EVVKIINYAYKDSIDGDIYEELEGRLQLFENVVGPMRP 938


>gi|218515260|ref|ZP_03512100.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli
           8C-3]
          Length = 522

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           RT D     +  + +EG+I +      +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 178 RTADMRSALVDYFRDEGQIMIA---TEAGAEGINLQF-CSLVVNYDLPWNPQRVEQRIGR 233

Query: 151 IGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   I  +N  D+ V Q L  K  + + +  A
Sbjct: 234 C-----HRYGQKHDVVVVNFINRKNEADQRVYQLLSEKFRLFEGVFGA 276


>gi|327348280|gb|EGE77137.1| hypothetical protein BDDG_00074 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1438

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      +  ++  I     H  +   GL
Sbjct: 1185 GAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECFLLHAKAHASGL 1244

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1245 NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEECIYD 1297


>gi|313905795|ref|ZP_07839154.1| SNF2-related protein [Eubacterium cellulosolvens 6]
 gi|313469401|gb|EFR64744.1| SNF2-related protein [Eubacterium cellulosolvens 6]
          Length = 872

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  KI        +   GLNLQ+  N ++ + L W+ ++ +Q I R       + G K  
Sbjct: 488 NNAKI---LIVTDAGSEGLNLQF-CNTVINYDLPWNPQKIEQRIGRC-----HRYGQKHD 538

Query: 165 VFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
           V    L+  +N  D  V + LR K  + D +  A
Sbjct: 539 VVAINLLNTENEADRRVYEILRHKFELFDGVFGA 572


>gi|226292448|gb|EEH47868.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb18]
          Length = 1440

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D    T +   +  I     H  +   GL
Sbjct: 1196 GAKSIVFSQYKPFLGILARAFSHFKIGFSSIDYHDGTERFKRDPSIECFLLHAKAHSSGL 1255

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1256 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEESIYD 1308


>gi|22537429|ref|NP_688280.1| SNF2 family protein [Streptococcus agalactiae 2603V/R]
 gi|22534305|gb|AAN00153.1|AE014250_16 SNF2 family protein [Streptococcus agalactiae 2603V/R]
          Length = 2274

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     + +  + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHYLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+     RQ    + V +Y+ I + + D  + Q    K
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFDNYLWQTQENK 1998


>gi|261201348|ref|XP_002627074.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239592133|gb|EEQ74714.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1503

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      +  ++  I     H  +   GL
Sbjct: 1250 GAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECFLLHAKAHASGL 1309

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G  R   V+  +  ++++E +  
Sbjct: 1310 NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQHRETTVWMYLVSDSVEECIYD 1362


>gi|225562273|gb|EEH10552.1| ATP-dependent DNA helicase [Ajellomyces capsulatus G186AR]
          Length = 1468

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      Q   +  +     H  +   GL
Sbjct: 1210 GAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVEQFKTDPSVECFLLHAKAHSSGL 1269

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G K+   V+  +  ++++E +  
Sbjct: 1270 NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQKQETTVWMYLVSDSVEESIYD 1322


>gi|303276775|ref|XP_003057681.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460338|gb|EEH57632.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 509

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 21/137 (15%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-----FP 89
            G+   D           K   L  ++    +N    +V     + L  L+KA       
Sbjct: 381 GGSKSADLGGDPS--ASGKAAFLMDMLRHLASNGHRTLVFSQSRAMLDVLEKAAAAEGHK 438

Query: 90  QGRTLDKDPCT-----IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             R     P       ++ +     IPL        G GL L    + +V +   W+   
Sbjct: 439 LVRIDGNVPADERHARVERFQSDASIPLALLTSQVGGLGLTLT-AADRVVIYDPSWNPAS 497

Query: 144 HQQMIERIGVTRQRQAG 160
             Q ++R       + G
Sbjct: 498 DSQSVDR-----AYRIG 509


>gi|156054460|ref|XP_001593156.1| hypothetical protein SS1G_06078 [Sclerotinia sclerotiorum 1980]
 gi|154703858|gb|EDO03597.1| hypothetical protein SS1G_06078 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1270

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 14/138 (10%)

Query: 54   EKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWN 105
             KI  L   I    E    +  IV   F   L  L +AF   R     +DK        N
Sbjct: 1038 TKIDTLARHILYLRESDPGSKSIVFSQFAEFLPILARAFRVFRIGHASIDKPNGIEIFKN 1097

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I +   H  +   GL L    ++ +      +     Q + R+      + G     
Sbjct: 1098 DPNIEVFLLHSRAHSAGLTLVNASHVFI-CEPLLNTALEIQAVARVD-----RIGQLVDT 1151

Query: 166  FVYYLIAQNTIDELVLQR 183
             VY  I  NT+++ + + 
Sbjct: 1152 NVYLHIIGNTVEQSIYEL 1169


>gi|6562295|emb|CAB62593.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 786

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 30/195 (15%)

Query: 16  QGENIEAFNS-ASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIKALEVIIEKAN 67
           +  ++ A NS    + K  QL     Y           + W  +H   +  L+   E+ +
Sbjct: 479 EAGHVNAENSDGPNSDKENQLCGKLSYQQLGIAKLSAFREWLSLH-PLLSGLDYTPEEID 537

Query: 68  A----APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQEWN-EGKIPLL 112
                  ++V  H +  L  +Q+             G TL +D    +Q +    ++ + 
Sbjct: 538 GDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIA 597

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL+     N +VF  L        Q  +R       + G   AV VY   A
Sbjct: 598 IIGVEAGGVGLDFSAAQN-VVFLELPKTPSLLLQAEDR-----AHRRGQTSAVNVYIFCA 651

Query: 173 QNTIDELVLQRLRTK 187
           ++T+DE   Q L  K
Sbjct: 652 KDTMDESNWQNLNKK 666


>gi|218134948|ref|ZP_03463752.1| hypothetical protein BACPEC_02853 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990333|gb|EEC56344.1| hypothetical protein BACPEC_02853 [Bacteroides pectinophilus ATCC
           43243]
          Length = 403

 Score = 57.3 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ +   +  +L     S   GLNLQ+  N ++ + 
Sbjct: 66  YKAWKARNYGKYVGSRNVELKNAIVEAF-RDEYKILLV-TDSGSEGLNLQF-CNTIINYD 122

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 123 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 177

Query: 196 NA 197
            A
Sbjct: 178 GA 179


>gi|307110846|gb|EFN59081.1| hypothetical protein CHLNCDRAFT_9310 [Chlorella variabilis]
          Length = 374

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-----KI 56
             +   QRE+    +G  ++  N  +  ++   + N  +  +       +  E     K+
Sbjct: 218 ALFRLMQREMQGTGRGG-LKGVN--NVLMEMRNICNHPLISEAALPPHSLPAEVRLCGKL 274

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
           + L+ ++   +A    +++       L  +                G    K    ++ +
Sbjct: 275 ELLDRMLVKLRAGGHKVLLFSTMTRALDVVSDYLGWRGFRHLRLDGGTAAGKRGELVERF 334

Query: 105 NE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           N+  G + +      + G GLNLQ G + ++ +   W+ 
Sbjct: 335 NDPGGGVFVFLLSIRAGGVGLNLQ-GADTVIMYDTDWNP 372


>gi|315231610|ref|YP_004072046.1| DNA/RNA helicase [Thermococcus barophilus MP]
 gi|315184638|gb|ADT84823.1| DNA/RNA helicase [Thermococcus barophilus MP]
          Length = 952

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 19/133 (14%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFA 114
              I++   +   L  L+   P+             G+         + + +     +  
Sbjct: 403 GEKIVIFTEYLDTLEYLKNNLPKYLGINETDIVTISGKNKGDVHNIKERFEQENGAKILI 462

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GLNLQ   N+L+ +   W   + +Q + RI      + G K+  +VY +   N
Sbjct: 463 ATDVAGEGLNLQV-ANVLINYEAPWSPIKLEQRMGRIW-----RLGQKKESYVYTVFLSN 516

Query: 175 TIDELVLQRLRTK 187
            +D  VL+ L  K
Sbjct: 517 KMDRDVLENLYHK 529


>gi|322708293|gb|EFY99870.1| putative protein RIS1 [Metarhizium anisopliae ARSEF 23]
          Length = 897

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            K    ++ +       +  +   + G  LN+    N ++    WW++    Q   R   
Sbjct: 778 KKKKKALEMFKKSPTTNVFLSGLMAGGQSLNITC-ANRIIIIDPWWNVTSELQAAGRTS- 835

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               + G  +  +V  +      D  V +  ++KS 
Sbjct: 836 ----RIGQTKKCYVVRIFTSAATDARVAELQKSKSE 867


>gi|117922220|ref|YP_871412.1| SNF2-like protein [Shewanella sp. ANA-3]
 gi|117614552|gb|ABK50006.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 1148

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +        I E+   +   L    P + G GL +  G N +V F   W+  + 
Sbjct: 871 KAVVKNKNTANRKSMIAEFEAKEGFNLIIFSPVAAGVGLTV-VGANNVVHFERHWNPAKE 929

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G  + V VY    +     + D  + + L  KS ++D ++
Sbjct: 930 AQATDRV-----YRIGQTKDVNVYVPILHHPTIESFDVNLHRLLSQKSMLKDAVV 979


>gi|159482010|ref|XP_001699066.1| hypothetical protein CHLREDRAFT_177665 [Chlamydomonas reinhardtii]
 gi|158273129|gb|EDO98921.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 874

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A     G GLNL    + +V      D     Q + R+      + G  R   V+  +  
Sbjct: 563 AKLKQGGAGLNLTEAQH-VVLVEPQLDPAAEAQAVGRV-----HRIGQARPTHVHRFVVA 616

Query: 174 NTIDELVLQRLRTKSTIQD-LLLNAL 198
           +T++E V +    ++   D  LL ++
Sbjct: 617 HTVEEQVHRLADNRARGMDLSLLASV 642


>gi|83646357|ref|YP_434792.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83634400|gb|ABC30367.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis
           KCTC 2396]
          Length = 1003

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 47/231 (20%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------K 49
           +K Y     E+   + G  IE           L+L    +++D    +            
Sbjct: 770 LKYYD----EVIASVHGRKIEDKRRIVLPS-LLKLKIACIHHDIGSGYTPSNSPKEFLRH 824

Query: 50  EVHDEKIKALEVIIEKANAA--PIIVAYHFNS----------DLARLQKAFPQGRTLD-- 95
             +  KI+A+  +++        ++V     +           L ++Q     G T    
Sbjct: 825 AENSIKIQAMLDVLKDIEKRQEKVLVFATSKAVQAYTSALITTLFKIQAPIVNGDTKAVA 884

Query: 96  ------KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      I  +   K   +L   P + G GL +  G N ++     W+  +  Q  
Sbjct: 885 TPKDDLTRKAIIDRFQSEKGFRVLIMSPIAAGVGLTV-VGANNVIHLERHWNPAKEAQAT 943

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           +R+      + G K+ V VY  +A +    + D  +   L  K T+ D ++
Sbjct: 944 DRV-----YRIGQKKNVNVYLPMALHPNLSSFDIQLNTLLNNKVTLSDAVV 989


>gi|330933137|ref|XP_003304061.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
 gi|311319572|gb|EFQ87831.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
          Length = 2131

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSD--LARLQKAFP--QGRTLDKDP-CTIQEWNE 106
            +KI A+  +I +       I+ A +  S   L R+          T +      I+E+  
Sbjct: 1907 KKIDAIVELISRMPPTDQGILFAPNNESMRVLERVLDHHEIRYSSTRETGAAQVIEEFKT 1966

Query: 107  GKIPLLFAHP------ASCGHGLNLQYGGNILVFFSLWWDLEEHQ------QMIERIGVT 154
             K P                 G+NL    N ++F S  +  ++++      Q I R    
Sbjct: 1967 NKEPATMKKLLILDVGDESAAGINL-VNANHVIFVSPLYTEKQYKYESSMAQAIAR---- 2021

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R+ G  + V++Y+++A  TID  +L+  R K    + +++A
Sbjct: 2022 -SRRHGQDKRVYIYHVVALRTIDVDILE-QRHKRC--EAMISA 2060


>gi|325089460|gb|EGC42770.1| ATP-dependent DNA helicase [Ajellomyces capsulatus H88]
          Length = 1490

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      Q   +  +     H  +   GL
Sbjct: 1251 GAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVEQFKTDPSVECFLLHAKAYSSGL 1310

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL    + +       +     Q I R+      + G K+   V+  +  ++++E +  
Sbjct: 1311 NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQKQETTVWMYLVSDSVEESIYD 1363


>gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera]
          Length = 1717

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVAY 75
            G  IEA       +KC +     + +        V +  + A     +         VA 
Sbjct: 1491 GTKIEAVTRRILWIKCTEPKAKILVFSSWNDVLNVLEHALNANNITYVRMKGGRKSHVAI 1550

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                   +   A   G+T  + P    E+    + +L        +GLNL    + +V  
Sbjct: 1551 S--HFRRQRTSAEGNGQTHAQQPEPEPEF----VQVLLLLIQHGANGLNLLEAQH-VVLV 1603

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                +     Q I R+      + G +    V+  I ++T++E + +  R+++T
Sbjct: 1604 EPLLNPAAEAQAISRV-----HRIGQENRTLVHRFIVKDTVEESIYKLNRSRNT 1652


>gi|326524448|dbj|BAK00607.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 77

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             WW+     Q  +RI      + G  + +     + ++T++E +LQ    K  + D
Sbjct: 2   DPWWNPAVESQAQDRI-----HRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFD 53


>gi|160894868|ref|ZP_02075642.1| hypothetical protein CLOL250_02418 [Clostridium sp. L2-50]
 gi|156863299|gb|EDO56730.1| hypothetical protein CLOL250_02418 [Clostridium sp. L2-50]
          Length = 862

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ +   +  +L     S   GLNLQ+  N ++ + 
Sbjct: 453 YKAWKARNYGKYVGSRNVELKNAIVEAF-RDEYKILLV-TDSGSEGLNLQF-CNTIINYD 509

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 510 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 564

Query: 196 NA 197
            A
Sbjct: 565 GA 566


>gi|196010716|ref|XP_002115222.1| hypothetical protein TRIADDRAFT_59182 [Trichoplax adhaerens]
 gi|190581993|gb|EDV22067.1| hypothetical protein TRIADDRAFT_59182 [Trichoplax adhaerens]
          Length = 974

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTI 101
           K++ L  ++E  + N    ++       L  +QK   +                +    +
Sbjct: 420 KLQLLADLLENFEINGHRCLIFSQSRKMLNIIQKVVTERGYKMLRIDGTVTKPGRRMELV 479

Query: 102 QEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           QE+      L         G GLNL    + ++ F   W+     Q ++R
Sbjct: 480 QEFQTNSSYLCFLLTTQVGGVGLNLT-AADRVIIFDPSWNPATDAQAVDR 528


>gi|308274079|emb|CBX30678.1| hypothetical protein N47_E41900 [uncultured Desulfobacterium sp.]
          Length = 1194

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +L A   + G G+NLQ   +++V + L W+    +Q   RI      + G     
Sbjct: 582 DPEVKVLLA-TDAAGEGINLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQTEVC 634

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            ++ L+A+ T +  V +RL  K
Sbjct: 635 HLWNLVAEETREGDVYRRLLDK 656


>gi|255547283|ref|XP_002514699.1| ATP binding protein, putative [Ricinus communis]
 gi|223546303|gb|EEF47805.1| ATP binding protein, putative [Ricinus communis]
          Length = 1229

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 37/200 (18%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV------II 63
           E             ++ +  +  L         + +  ++E+   K+ A         +I
Sbjct: 475 EALLKFTIHEDNTLHAFTLYLHFLSGCGSFCKLN-KLSYQELGIAKLPAFREWLSIHPLI 533

Query: 64  EKANA----------APIIVAYHFNSDLARLQKAF---------PQGRTLDKDPC-TIQE 103
            +++             +I+  H +  L  +Q+             G TL +D    ++ 
Sbjct: 534 TESDGVAELDVNCISQKMIIFAHHHKVLDGVQELIFEKGIGFVRIDGNTLPRDRQSAVRS 593

Query: 104 WNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +        + +      + G GL+     N +VF  L        Q  +R       + 
Sbjct: 594 FQSSNEASIVKIAIIGVTAGGVGLDFSSAQN-VVFLELPQSSSLMLQAEDR-----AHRR 647

Query: 160 GFKRAVFVYYLIAQNTIDEL 179
           G   AV +Y   A++T+DE 
Sbjct: 648 GQTNAVNIYIFCAKDTVDER 667


>gi|224009261|ref|XP_002293589.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970989|gb|EED89325.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 83

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I ++  G++ +L     +   G NLQ   N +V         EH   +E+  + R  
Sbjct: 2   SRAITDFTTGEVSILLLSAQAKASGANLQCATN-VVLLDPAGSSAEHGATLEQQAIGRAV 60

Query: 158 QAGFKRAVFVYYLIAQNTIDELV 180
           + G + AV V   + +++I+E +
Sbjct: 61  RMGQENAVKVVRFLVKDSIEEDL 83


>gi|323452538|gb|EGB08412.1| hypothetical protein AURANDRAFT_64133 [Aureococcus anophagefferens]
          Length = 1459

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 45   EKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
                +     K+  L   +E          +V   +   L  +  A  Q           
Sbjct: 1281 HDRSRVDFGAKLDELADDVEAHVTRKGLKCLVFSSWTDALDLVAVALKQRGVASLALKGG 1340

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             + P  ++ +  +  +  L  + ++   GLNL    ++   F L  +L+      E   +
Sbjct: 1341 KQAPKILEAFKADPHVSALLMNISTNNAGLNLSEATHV---FLLDTNLDH---ARETQAL 1394

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R ++   K    V+  +   +I++ + Q   +K+T    L
Sbjct: 1395 ARVQRLDSKSETTVHRYVTGGSIEDAIWQLRLSKATAAGEL 1435


>gi|3068759|gb|AAC41305.1| Mi-2 [Xenopus laevis]
          Length = 410

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +V +   W+     Q       +R  + G  R V +Y  + + +++E + Q  + K 
Sbjct: 3   ADTVVIYDSDWNPHNDIQA-----FSRAHRIGQNRKVMIYRFVTRASVEERITQVAKKKM 57

Query: 189 TI 190
            +
Sbjct: 58  ML 59


>gi|220915713|ref|YP_002491017.1| helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953567|gb|ACL63951.1| helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 898

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 26/191 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
             L     E +  +++ ++  ++  GA      +       EK KAL  +          
Sbjct: 343 AALLAHLAERYGLSARLIRNRRVKVGAFTSRVLRRVDVGEGEKPKALVDLCAGLARGGEK 402

Query: 71  IIVAYHFNSDLARLQKA-------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++V   F  DL  L+               +    +L+     +  + + + P+L     
Sbjct: 403 VLV---FGGDLEALRGLQGGLAEAGLEALLYDDAPSLEARDRLVARFRDPEGPMLLLSGE 459

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G N Q+  + LV   L       +Q I R+      + G  R V ++  +     D
Sbjct: 460 SGGEGRNFQF-AHHLVCADLPASPLVLEQRIGRLD-----RLGQTRPVEIHVPVEPG--D 511

Query: 178 ELVLQRLRTKS 188
           E  L  L  K 
Sbjct: 512 EAFLADLYEKE 522


>gi|67678171|gb|AAH96935.1| Wu:fd12d03 protein [Danio rerio]
          Length = 479

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+     Q       +R  + G  + V +Y  + + +++E + Q  + K 
Sbjct: 2   ADTVIIYGSDWNPHNDIQA-----FSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKM 56

Query: 189 TI 190
            +
Sbjct: 57  ML 58


>gi|300933400|ref|ZP_07148656.1| SNF2-related protein [Corynebacterium resistens DSM 45100]
          Length = 948

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ E     L     +   G+NLQ+  ++LV + L W+ +  +Q   RIG  
Sbjct: 482 DRRKALVDEFRERGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRIEQ---RIG-- 533

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
           R  + G K  V V     +  + +E +L+ L  K  +   +  A
Sbjct: 534 RAHRFGQKHNVVVVNFSNKGNLAEERILELLTEKFELFTSVFGA 577


>gi|210610976|ref|ZP_03288685.1| hypothetical protein CLONEX_00875 [Clostridium nexile DSM 1787]
 gi|210152201|gb|EEA83208.1| hypothetical protein CLONEX_00875 [Clostridium nexile DSM 1787]
          Length = 862

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ +   +  +L     S   GLNLQ+  N ++ + 
Sbjct: 453 YKAWKARNYGKYVGSRNVELKNAIVEAF-RDEYKILLV-TDSGSEGLNLQF-CNTIINYD 509

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 510 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 564

Query: 196 NA 197
            A
Sbjct: 565 GA 566


>gi|307110467|gb|EFN58703.1| hypothetical protein CHLNCDRAFT_34017 [Chlorella variabilis]
          Length = 701

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  + G +R V VY L+ + T++E ++   R K  +   L+NA
Sbjct: 570 QAMDRAHRLGQQRTVNVYRLLVRGTVEEQIMSLQRFKLDVAATLVNA 616


>gi|302889034|ref|XP_003043403.1| hypothetical protein NECHADRAFT_87480 [Nectria haematococca mpVI
           77-13-4]
 gi|256724319|gb|EEU37690.1| hypothetical protein NECHADRAFT_87480 [Nectria haematococca mpVI
           77-13-4]
          Length = 939

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 25/145 (17%)

Query: 52  HDEKIKALEVIIEKANAAP--------IIVAYHFNSDLARLQKAFPQGR----------T 93
              K++AL   I +    P         ++   +   L  +  A               +
Sbjct: 772 PSAKVEALLRNISERQQRPGQNSKPNKSVIFSFWTKMLDLIGVALEDKGMKFCRIDGQAS 831

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + +    I  + N+ +  ++ A   + G G++L    ++ +     W+     Q I+R+ 
Sbjct: 832 MSQRKQAIATFGNDPECNIMLASIGAVGEGIDLVCANSVHI-IEPHWNPMAEAQAIDRV- 889

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTID 177
                + G ++ V V   I  ++I+
Sbjct: 890 ----HRIGQQQEVDVVRYIVNDSIE 910


>gi|323456692|gb|EGB12558.1| hypothetical protein AURANDRAFT_17580 [Aureococcus anophagefferens]
          Length = 68

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      +   G+NL    N  V      ++   +Q I R+      + G +R V ++ L
Sbjct: 5   IFLLSIRAGACGINLTQ-ANHCVMVEPCTNVALDRQAIGRV-----HRMGQQRDVTIHRL 58

Query: 171 IAQNTIDELV 180
           + +++++  +
Sbjct: 59  VLRDSVESRM 68


>gi|302839932|ref|XP_002951522.1| hypothetical protein VOLCADRAFT_92108 [Volvox carteri f. nagariensis]
 gi|300263131|gb|EFJ47333.1| hypothetical protein VOLCADRAFT_92108 [Volvox carteri f. nagariensis]
          Length = 2115

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
               ++ L+ +      +  +V   +   L  +Q+A             G    +      
Sbjct: 1940 SALLEELDRMATSDPCSKALVFSSWGRLLRLVQEALLANNVRCASMVGGNPAARQAALQS 1999

Query: 103  EWNEGKIPLLFA--HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              ++    +L      +    GL+L    +         +     Q   RI      + G
Sbjct: 2000 FLHDPTCRVLLLLKSHSGGAAGLSLTV-AHTAFMLEPAVNPGLEAQAAARIC-----RLG 2053

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              R   V  +IA++T+++ VL   + K  +
Sbjct: 2054 QDRPTRVIRIIAKHTVEDRVLAMQQYKQQL 2083


>gi|237830003|ref|XP_002364299.1| helicase, putative [Toxoplasma gondii ME49]
 gi|211961963|gb|EEA97158.1| helicase, putative [Toxoplasma gondii ME49]
 gi|221507167|gb|EEE32771.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1200

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEW-NEGKIPLLFAHPASC 119
             I++   + + L  LQ A  +   +           D  T+  + N+    +L       
Sbjct: 932  KILIFSEWPAALDLLQVALRRSGVVSLKYLGGHSQADRTTLWYFRNDPHARVLLCSLLRA 991

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GL L    + +VF  +  +  E +Q I R+      +   KR   V+  I +++++E 
Sbjct: 992  GRGLTLTEATH-VVFLEVPLNHAEEEQAIGRV-----YRMAQKRQTHVWRFIVKDSVEER 1045

Query: 180  VLQ-RLRTKSTIQDLLLNA 197
            ++Q R + +  + + L  A
Sbjct: 1046 IVQMRQKPRDGLSERLATA 1064


>gi|313902234|ref|ZP_07835641.1| helicase domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467514|gb|EFR63021.1| helicase domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 1205

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 29/200 (14%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L+ E        +  ++  Q          ++ W+E+  + ++  EV+ +     
Sbjct: 478 QTIAELRAEIETLKELEALALRVRQ-------SGTDRKWEEL-SKILQDREVMFDARGHR 529

Query: 70  PIIVAYHFNSDLAR-----LQKAF--PQGRT-------LDKDPCTIQEWNEGKIPLLFAH 115
             +V +  + D AR     +Q     P+           ++     + + +     +   
Sbjct: 530 RKLVIFTEHRDTARYLAWRIQTLLGRPEAVVVIEGTMGREERRKAQELFTQDPNVHVLVA 589

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ   +++V + L W+    +Q   RI      + G      ++ L+AQNT
Sbjct: 590 TDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAQNT 643

Query: 176 IDELVLQRLRTK-STIQDLL 194
            +  V   L  K    Q  L
Sbjct: 644 REGEVYLALLRKLEAEQRAL 663


>gi|77163610|ref|YP_342135.1| Type III restriction enzyme, res subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254434998|ref|ZP_05048505.1| Type III restriction enzyme, res subunit family [Nitrosococcus
           oceani AFC27]
 gi|76881924|gb|ABA56605.1| Type III restriction enzyme, res subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088109|gb|EDZ65381.1| Type III restriction enzyme, res subunit family [Nitrosococcus
           oceani AFC27]
          Length = 962

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 49  KEVHDEKIKALEVII------EKANAAPIIVAYHFNSDLARLQKAFPQGRT--------- 93
           +   D K +AL   I      E      +++   F      L++                
Sbjct: 474 QAGPDAKAEALIEWIYELQAEENEPDLKVLIFTEFVPTQEMLKEFLEARGISVVTLNGSM 533

Query: 94  -LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++        +   K   +     + G GLNLQ+  ++++ + + W+    +Q I R+ 
Sbjct: 534 DMEVRGAAQDTF--RKSHRVLLSTDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD 590

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                + G  + V     + +++++  V + L  K
Sbjct: 591 -----RIGQPKMVRAINFVFEDSVEFRVREVLEQK 620


>gi|87301587|ref|ZP_01084427.1| possible helicase [Synechococcus sp. WH 5701]
 gi|87283804|gb|EAQ75758.1| possible helicase [Synechococcus sp. WH 5701]
          Length = 538

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 29/174 (16%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSD 80
             S +      Q+  GA Y             K+ A + ++ +     A ++V   F + 
Sbjct: 358 AESLAMLTALRQI--GAAY-------------KVPAAQALVTQLLVGGAAVVVFTAFVAP 402

Query: 81  LARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             RL  +        +         ++ +  G++PLL A  A  G G  L +  + +V  
Sbjct: 403 AERLAASLGGAVLTGRLKPPERQRQVERFQAGRVPLLVATFAVAGLGFTL-HRASHVVLL 461

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              W   + +Q  +R       + G    +  ++L      D+LV   + +K+ 
Sbjct: 462 ERPWTPGDTEQAEDR-----AHRIGMAGPLTAHWLQL-GVADQLVDGLIASKAE 509


>gi|224127900|ref|XP_002329205.1| hypothetical protein POPTRDRAFT_266879 [Populus trichocarpa]
 gi|222870986|gb|EEF08117.1| hypothetical protein POPTRDRAFT_266879 [Populus trichocarpa]
          Length = 166

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q+     I +L        +GLNL    + +V      +     Q + R+      + G 
Sbjct: 23  QQQETKSIQVLLLLIQHGANGLNLLEAQH-VVLVEPLLNPAAEAQAVSRV-----HRIGQ 76

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++   V+  I ++T++E + +  R++ST  
Sbjct: 77  EQRTLVHRFIVKDTVEESIYKLNRSRSTSS 106


>gi|221487370|gb|EEE25602.1| hypothetical protein TGGT1_086760 [Toxoplasma gondii GT1]
          Length = 1213

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEW-NEGKIPLLFAHPASC 119
             I++   + + L  LQ A  +   +           D  T+  + N+    +L       
Sbjct: 944  KILIFSEWPAALDLLQVALRRSGVVSLKYLGGHSQADRTTLWYFRNDPHARVLLCSLLRA 1003

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GL L    + +VF  +  +  E +Q I R+      +   KR   V+  I +++++E 
Sbjct: 1004 GRGLTLTEATH-VVFLEVPLNHAEEEQAIGRV-----YRMAQKRQTHVWRFIVKDSVEER 1057

Query: 180  VLQ-RLRTKSTIQDLLLNA 197
            ++Q R + +  + + L  A
Sbjct: 1058 IVQMRQKPRDGLSERLATA 1076


>gi|260801152|ref|XP_002595460.1| hypothetical protein BRAFLDRAFT_69293 [Branchiostoma floridae]
 gi|229280706|gb|EEN51472.1| hypothetical protein BRAFLDRAFT_69293 [Branchiostoma floridae]
          Length = 650

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDP 98
             K   L  ++E+        +V       L  +QK                 +  D+D 
Sbjct: 30  SGKTCVLVELLERLKEEGHQTLVFSQSRKMLDIIQKILKSRGFKVMRIDGTITKLEDRDK 89

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +  ++    +        G GLNL    + +V +   W+     Q ++R
Sbjct: 90  RIRRFQSDPSWSVFLLTTQVGGVGLNLT-AADRVVIYDPSWNPATDAQAVDR 140


>gi|115474095|ref|NP_001060646.1| Os07g0680500 [Oryza sativa Japonica Group]
 gi|33146657|dbj|BAC80003.1| SNF2/SWI2 family transcription factor-like protein [Oryza sativa
           Japonica Group]
 gi|50509527|dbj|BAD31220.1| SNF2/SWI2 family transcription factor-like protein [Oryza sativa
           Japonica Group]
 gi|113612182|dbj|BAF22560.1| Os07g0680500 [Oryza sativa Japonica Group]
 gi|215687240|dbj|BAG91805.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 184

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L        +GLNL    + ++      +     Q I RI      + G  ++ F++ 
Sbjct: 37  QVLLMLIQHGANGLNLLEAQH-VILVEPLLNPAAEAQAISRI-----HRVGQDKSTFIHR 90

Query: 170 LIAQNTIDELVLQRLRTKS 188
            I +NTI+E + +  R ++
Sbjct: 91  FIVKNTIEESIYKLNRGRA 109


>gi|283781192|ref|YP_003371947.1| helicase domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283439645|gb|ADB18087.1| helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 949

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 31/193 (16%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
            DL        ++A +  + L +A  A         +   D K+  +  I+++  +    
Sbjct: 434 ADLADLEENESDAAKERKRLLDMARAA------DKLEGDGDPKLVQMVPIVKRLVSEGHR 487

Query: 71  IIVAYHFNSDLA----RLQKAFPQGRTL---------DKDPCTIQEWNEGKIPLLFAHPA 117
            I+   F +       +L++  P+G T+          +    IQE    +  +L     
Sbjct: 488 PILFCRFIATAEYLAEQLRQRLPKGVTVIAVTGQIPPSEREARIQEMRNHEQYVLVC-TD 546

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA---VFVYYLIAQN 174
               G+NLQ+  + ++ + L W+   H+Q   R+      + G  +    V  YY    N
Sbjct: 547 CLSEGINLQHLFDSVIHYDLSWNPTRHEQREGRVD-----RFGQPKPEVKVLTYY-GTDN 600

Query: 175 TIDELVLQRLRTK 187
            ID +VL+ L  K
Sbjct: 601 QIDGVVLEVLIRK 613


>gi|242786466|ref|XP_002480811.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218720958|gb|EED20377.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1481

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 10/128 (7%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEW-NEGKIPLLFA 114
            L  + E    A  IV   +   L  L  AF + +      +    IQ++  +        
Sbjct: 1243 LMWLREHDPGAKSIVFSQYRDFLGVLANAFSRFKIGFSSVEAKNGIQKFKEDAAAECFLL 1302

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            H  +   GLNL    + +       +     Q I R+      + G  R   V+  +  +
Sbjct: 1303 HARAHSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPTTVWMYLVSD 1356

Query: 175  TIDELVLQ 182
            T++E + Q
Sbjct: 1357 TVEESIYQ 1364


>gi|254805307|ref|YP_003083528.1| putative DEAD/DEAH box helicase [Neisseria meningitidis alpha14]
 gi|254668849|emb|CBA06913.1| putative DEAD/DEAH box helicase [Neisseria meningitidis alpha14]
          Length = 932

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 20/209 (9%)

Query: 1   MKQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           +K + +    +  D +   +  A ++A   +K L  A  A+ + E K  +    E +   
Sbjct: 361 LKHFKQLAENIREDAKSRALLTALSTAFTKLKELGAAQKAIIFTESKRTQAYLLECLAQT 420

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
           +   E  +   +    + +    ++ K + +           +T D     ++ + E   
Sbjct: 421 DYAGENGDGIVLFNGTNSDPQAQKIYKNWLKRHEGSDKITGSKTADTRAALVEHFKERGT 480

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +     +   G+NLQ+  ++++ + L W+ +  +Q I R       + G K  V V  
Sbjct: 481 --IMIATEAGAEGINLQF-CSLIINYDLPWNPQRVEQRIGRC-----HRYGQKHDVVVVN 532

Query: 170 LIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + + N  D+ V + L  K  + D +  A
Sbjct: 533 FVDETNEADQRVYELLEQKFKLFDGVFGA 561


>gi|159481869|ref|XP_001698997.1| SWI/SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158273260|gb|EDO99051.1| SWI/SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 531

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  +   + G G+NL    + +     WW+    +Q ++R+      + G  R V
Sbjct: 476 VFLSSLKAGGVGMNLT-AASAVHLMDPWWNPAVEEQAMDRV-----HRLGQTRDV 524


>gi|78355826|ref|YP_387275.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218231|gb|ABB37580.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 665

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R +D     ++ + +     +     +   G+NLQ+  +++V + L W+ +  +
Sbjct: 464 GRISGSRPIDVRTALVEHFRDNAQ--IMIATEAAAEGVNLQF-CSLIVNYDLPWNPQRIE 520

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +  +N  D+ V + L  K  + + +  A
Sbjct: 521 QRIGRC-----HRYGQKHDVVVVNFLNERNAADQRVYELLEHKFNLFNGVFGA 568


>gi|21229999|ref|NP_635916.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66766875|ref|YP_241637.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188989950|ref|YP_001901960.1| putative DNA-binding protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111516|gb|AAM39840.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66572207|gb|AAY47617.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167731710|emb|CAP49888.1| putative DNA-binding protein [Xanthomonas campestris pv.
           campestris]
          Length = 967

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT D     ++ + + +   +     + G G+NLQ+  ++LV + L W+ +  +Q I RI
Sbjct: 507 RTADMKAAVVEAFRDHRD--VLITTEAGGEGINLQF-CSLLVNYDLPWNPQRVEQRIGRI 563

Query: 152 GVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K  V V   +  +N  D+LV + L  K  + D +  A
Sbjct: 564 -----HRYGQKSDVVVVNFVNRKNRADQLVFELLEKKFKLFDGVFGA 605


>gi|163848249|ref|YP_001636293.1| helicase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526160|ref|YP_002570631.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669538|gb|ABY35904.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450039|gb|ACM54305.1| helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 1189

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q  ++  + +L A   + G G+NLQ   +++V + L W+    +Q   RI   
Sbjct: 567 ERRKAQEQFLHDPAVRVLVA-TDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI--- 621

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G     F++ L+A  T +  V +RL  K
Sbjct: 622 --HRIGQTEVCFLWNLVADETREGDVYRRLLDK 652


>gi|116198109|ref|XP_001224866.1| hypothetical protein CHGG_07210 [Chaetomium globosum CBS 148.51]
 gi|88178489|gb|EAQ85957.1| hypothetical protein CHGG_07210 [Chaetomium globosum CBS 148.51]
          Length = 1480

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 10/120 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L  AF + R      DK         +    +   H  +   GL
Sbjct: 1261 GAKSIVFSQYKEFLDVLALAFRRYRIGYTSFDKAHGIAIFKEDPGTEVFLLHARAHASGL 1320

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    N +       +     Q I R+      + G +    V+  I   T++E +   
Sbjct: 1321 NL-VNANHVFLCEPLLNTALELQAIARVD-----RIGQQHGTTVWLYIVDGTVEESIHDL 1374


>gi|293190852|ref|ZP_06609014.1| helicase/SNF2 domain protein [Actinomyces odontolyticus F0309]
 gi|292820751|gb|EFF79713.1| helicase/SNF2 domain protein [Actinomyces odontolyticus F0309]
          Length = 955

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ +     L     +   G+NLQ+  ++LV + L W+ +  +Q I R+   
Sbjct: 489 DRRKALVDEFRKRGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRVEQRIGRV--- 542

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  + +E +LQ L  K  +   +  A
Sbjct: 543 --HRFGQKHNVIVVNFSNKGNVAEERILQLLTEKFKLFTSVFGA 584


>gi|240275731|gb|EER39244.1| DNA repair protein RAD8 [Ajellomyces capsulatus H143]
          Length = 219

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQG-------RT 93
            K W+E    K+  L  +++     A    +++   F   +     A  +          
Sbjct: 21  GKKWQEYGGTKLLELTRLVQDTERIAEDEQVLLFIQFPDLMEAASAALQKANIPHLMISV 80

Query: 94  LDKDPCT-IQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSL-WWDLEEHQQ 146
            D+   + I E+       +  +L  H       GLNLQ   +++ F  L      ++  
Sbjct: 81  NDRTSSSKIAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYNS 140

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +    + R R+ G ++ V +Y+ +A  TI+  + ++ R +  +
Sbjct: 141 GMA-QAIGRSRRYGQQKHVHIYHFLALKTIEVNIFEQRRRERLV 183


>gi|297607570|ref|NP_001060181.2| Os07g0598300 [Oryza sativa Japonica Group]
 gi|255677946|dbj|BAF22095.2| Os07g0598300 [Oryza sativa Japonica Group]
          Length = 1158

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 82  ARLQKAFPQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R++     G T  ++    +  +    ++ +      + G GL+     N +VF  L  
Sbjct: 547 QRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQN-VVFVELPK 605

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              E  Q  +R       + G   AV +Y   A+NT+DE     L         L+N  K
Sbjct: 606 SASELLQAEDR-----AHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKK 660

Query: 200 KETIHV 205
                +
Sbjct: 661 DAIREI 666


>gi|222637395|gb|EEE67527.1| hypothetical protein OsJ_24993 [Oryza sativa Japonica Group]
          Length = 1174

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 82  ARLQKAFPQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R++     G T  ++    +  +    ++ +      + G GL+     N +VF  L  
Sbjct: 583 QRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQN-VVFVELPK 641

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              E  Q  +R       + G   AV +Y   A+NT+DE     L         L+N  K
Sbjct: 642 SASELLQAEDR-----AHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKK 696

Query: 200 KETIHV 205
                +
Sbjct: 697 DAIREI 702


>gi|218199966|gb|EEC82393.1| hypothetical protein OsI_26740 [Oryza sativa Indica Group]
          Length = 1165

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 82  ARLQKAFPQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R++     G T  ++    +  +    ++ +      + G GL+     N +VF  L  
Sbjct: 583 QRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQN-VVFVELPK 641

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              E  Q  +R       + G   AV +Y   A+NT+DE     L         L+N  K
Sbjct: 642 SASELLQAEDR-----AHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKK 696

Query: 200 KETIHV 205
                +
Sbjct: 697 DAIREI 702


>gi|34393589|dbj|BAC83216.1| putative DNA helicase [Oryza sativa Japonica Group]
          Length = 1029

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 82  ARLQKAFPQGRTLDKDPCT-IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R++     G T  ++    +  +    ++ +      + G GL+     N +VF  L  
Sbjct: 418 QRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQN-VVFVELPK 476

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              E  Q  +R       + G   AV +Y   A+NT+DE     L         L+N  K
Sbjct: 477 SASELLQAEDR-----AHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKK 531

Query: 200 KETIHV 205
                +
Sbjct: 532 DAIREI 537


>gi|156034667|ref|XP_001585752.1| hypothetical protein SS1G_13268 [Sclerotinia sclerotiorum 1980]
 gi|154698672|gb|EDN98410.1| hypothetical protein SS1G_13268 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1092

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 28/157 (17%)

Query: 45   EKHWKEVHDEKIKALEV------IIEKANAAPIIVAYHFNSDLARLQKAFP--------- 89
                      K+  L        I+E      IIV Y   +    + +A           
Sbjct: 862  GSTIISTASSKLSYLMDQIFLHHILE-----KIIVFYEAENVGYYIAQALKCMNVEHLLY 916

Query: 90   --QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              +  T ++  C ++  +     ++         GL++    + + F +  +  +  +Q 
Sbjct: 917  SKRDSTSERSKCVVKFNSLPNFRVMLMDVNQAAFGLDM-SAASRVYFVNPVFSPQIEEQA 975

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            I+R       + G    V V  L+ + +I+E++L R 
Sbjct: 976  IKR-----AHRIGQLHPVHVETLVLKGSIEEVILTRR 1007


>gi|75759222|ref|ZP_00739323.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74493285|gb|EAO56400.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 68

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E     R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 1   MENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 50


>gi|328545242|ref|YP_004305351.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
 gi|326414984|gb|ADZ72047.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1170

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 33/218 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDE 54
                E    L+   I+   +A                 + A   V   +++ W E+   
Sbjct: 426 DDLSAEEQESLEENLIDDATAAKTVVELEAEIVILKGLEEQAKAVVASGQDRKWDEL-SR 484

Query: 55  KIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCT 100
            ++      + A     II+       L  L                   G   D+    
Sbjct: 485 ILQNHPETRDAAGRQRKIIIFSEHRDTLNYLHARIAGVLGNPDAIVTIHGGTHRDERRRL 544

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +  +  + +L A   + G G+NLQ   N++V + L W+    +Q   RI      + 
Sbjct: 545 QALFRSDPDVRVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRI 597

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 598 GQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|323448985|gb|EGB04877.1| hypothetical protein AURANDRAFT_1482 [Aureococcus anophagefferens]
          Length = 411

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 60  EVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEWNE 106
           E   E  N    IIV  H    L RL+  F + +               ++    +   +
Sbjct: 277 EHFFEDDNDTQKIIVFAHHREVLDRLEAGFQKIKGATTIRVDGSVPGAQREERIKRFKTD 336

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      +C +GLN+    + ++F  + W   +H Q  +RI      +     A  
Sbjct: 337 ATCRVALLSMGTCSNGLNMTE-ASTILFAEMTWSPTDHMQAEDRI-----HRVSQTNACN 390

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           +YY +  N++   + +RL+ K
Sbjct: 391 IYYAMLPNSLGSFMFRRLQAK 411


>gi|254521535|ref|ZP_05133590.1| SNF2-related [Stenotrophomonas sp. SKA14]
 gi|219719126|gb|EED37651.1| SNF2-related [Stenotrophomonas sp. SKA14]
          Length = 582

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++     + +  G   ++     S   G++ LQ+  + +VF  L W    H+Q I R+  
Sbjct: 443 NQKQAAKEAFIAGDSQVMLISLRSGA-GIDGLQHVCSTVVFGELDWSPGVHEQCIGRV-- 499

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + G    V  Y+L++ +  D +V   L  K       +  ++    H+
Sbjct: 500 ---HRDGQAEPVMAYFLLSDSGSDPIVSDVLGVKREQ----IEGVRSPGEHL 544


>gi|224139698|ref|XP_002323233.1| hypothetical protein POPTRDRAFT_576142 [Populus trichocarpa]
 gi|222867863|gb|EEF04994.1| hypothetical protein POPTRDRAFT_576142 [Populus trichocarpa]
          Length = 97

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+  + +Q I         + G K  V +  LIAQN+I+E +L+    K    +    
Sbjct: 21  PWWNSADEEQAI-----NCVHRYGQKENVRIVRLIAQNSIEERILEMQERKKLASEAFGR 75

Query: 197 ALKKETIHV 205
             +KE   V
Sbjct: 76  QGQKERREV 84


>gi|169609236|ref|XP_001798037.1| hypothetical protein SNOG_07705 [Phaeosphaeria nodorum SN15]
 gi|111064051|gb|EAT85171.1| hypothetical protein SNOG_07705 [Phaeosphaeria nodorum SN15]
          Length = 822

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
           +++   +     + +  +      K  ++        + + +     E ++ +E I++  
Sbjct: 605 EKDSEAEFVDTEVVDEKSRKIWLNKVREMT-------DREIFSHKVREVLECIENIVD-M 656

Query: 67  NAAPIIVAYHFN--SD-----LARLQKAFPQGRTLDKDPCTIQEWNEGK----------- 108
               I+V   F    D     L R + A   G  + +   T                   
Sbjct: 657 EQQDIVVFTTFLMFHDIISEALYRSKWAHKAGVEVLRFDGTTSSQERADRKLQFETKTTF 716

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             ++ A P + G+GL L    ++L     WW+        ER   +R  + G    V V+
Sbjct: 717 TKIMLATPGAGGYGLELSTAQHVLQL-EPWWNHN-----KERQAWSRTHRQGNLNPVTVW 770

Query: 169 YLIAQNT-IDELVLQRLRTKSTIQDLLLNALK 199
              A N+ ID L L     K+ + + ++  L+
Sbjct: 771 RFSASNSLIDSLFLAIAGKKTIVNESVMKYLR 802


>gi|222640173|gb|EEE68305.1| hypothetical protein OsJ_26567 [Oryza sativa Japonica Group]
          Length = 776

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 22/141 (15%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ------GRTL---------DKDPCTIQEWN-EGKI 109
           +    ++    +   +  L++   +      G+ +         +     + ++N     
Sbjct: 596 SAGEKLVAFSQYTLPMKFLERLLVKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNGSADA 655

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +LF    + G G++L     I++              + R  +    + G K+ VFVY 
Sbjct: 656 KVLFGSIKAFGEGISLVGASRIVILD------VHLNPSVTRQAIGSTFRPGQKKKVFVYR 709

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+A ++ +E   +    K  I
Sbjct: 710 LVAADSPEEKAHETAFNKEVI 730


>gi|40253498|dbj|BAD05447.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
 gi|40253701|dbj|BAD05643.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
          Length = 769

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 22/141 (15%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ------GRTL---------DKDPCTIQEWN-EGKI 109
           +    ++    +   +  L++   +      G+ +         +     + ++N     
Sbjct: 589 SAGEKLVAFSQYTLPMKFLERLLVKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNGSADA 648

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +LF    + G G++L     I++              + R  +    + G K+ VFVY 
Sbjct: 649 KVLFGSIKAFGEGISLVGASRIVILD------VHLNPSVTRQAIGSTFRPGQKKKVFVYR 702

Query: 170 LIAQNTIDELVLQRLRTKSTI 190
           L+A ++ +E   +    K  I
Sbjct: 703 LVAADSPEEKAHETAFNKEVI 723


>gi|240047625|ref|YP_002961013.1| hypothetical protein MCJ_005050 [Mycoplasma conjunctivae HRC/581]
 gi|239985197|emb|CAT05210.1| HYPOTHETICAL PROTEIN MCJ_005050 [Mycoplasma conjunctivae]
          Length = 400

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 15/191 (7%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           +K+Y             E I   NS  +        +LA+G +   E +    V + KI 
Sbjct: 197 VKEYKYMVEAPQEYFAKEKITFNNSKLEMQDLTNLRKLASG-ILIGENRKATIVSNYKIN 255

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLFA 114
            ++ +I+        + Y+FN +L  ++++  + +  + +   ++           ++  
Sbjct: 256 YIKKLIQP--KTNYCIFYNFNEELEMIKESLSKFKIFEINKTKVELQEALKYEDNFIIAI 313

Query: 115 HPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G   L+      ++FS   + E+  Q   RI      + G K+ V  YY+  +
Sbjct: 314 QYKWGARGFKGLENKVFNQIYFSPSLNKEDFWQSYIRI-----YRPGQKQEVNFYYIAGK 368

Query: 174 NTIDELVLQRL 184
           N+I+  +   L
Sbjct: 369 NSIELAIYHHL 379


>gi|320588566|gb|EFX01034.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 935

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGL 123
               IV   F   L  L +AF     G +   D   I ++  +  I     H  +   GL
Sbjct: 717 GTKAIVFSQFPEFLVILAQAFTHYHIGFSRFSDCDGIAKFKEDPSIECFLLHARAHSSGL 776

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    N ++      +     Q I R+      + G +    V+  I   T++E +   
Sbjct: 777 NL-VNANHVILCEPLVNTALELQAIARV-----HRIGQENETTVWLYIVDGTVEESIYNL 830


>gi|212528896|ref|XP_002144605.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074003|gb|EEA28090.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 2140

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 54   EKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTI 101
             K+ AL  +++  +  P    +I+   F      +  AF          G T  +    I
Sbjct: 1960 TKVDALVGLLKDESLIPKEDQVILFLQFPDLEETVTAAFQLHNISYVSVGTTGRRGRNRI 2019

Query: 102  QEWNEGKIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQA 159
            + +      +   H  +    GLNLQ   N ++FF+ +     ++ Q        R  + 
Sbjct: 2020 KTFAGHDKKVAILHLGTENAAGLNLQN-ANHVIFFAPFAAKSHYEYQSTITQSSGRVIRF 2078

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G K+ V ++ L+  NT++  +LQ    +  ++  
Sbjct: 2079 GQKKEVHIWNLVTLNTLEVGILQGQDGRVLVRRA 2112


>gi|302339016|ref|YP_003804222.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636201|gb|ADK81628.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 837

 Score = 56.5 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 13/169 (7%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
           D  +  +E    ++  +  II+    +  I+ +   ++   ++KA P+ R +       +
Sbjct: 289 DASREKRESIYVRVAKMREIIDADPDSHYIIWHDLEAERHAIKKALPESRWIYGSQKEEE 348

Query: 103 E------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  +++GK   L   P   G G N QY  +  +F  + +   +  Q + RI     
Sbjct: 349 RAENAIGFSDGKFKYLSTKPEISGSGANFQYHCHKAIFLGIGYKFNDFIQAVHRI----- 403

Query: 157 RQAGFKRAVFVYYLIAQN--TIDELVLQRLRTKSTIQDLLLNALKKETI 203
            +      V ++ +  ++  +I E ++ +      + D++   ++K  +
Sbjct: 404 YRFLQSEQVEIHIIYTESERSIYETLMHKWEQHRRLVDMMTEIVRKYGL 452


>gi|85857884|ref|YP_460086.1| SNF2 family DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720975|gb|ABC75918.1| superfamily II DNA/RNA helicase, SNF2 family [Syntrophus
           aciditrophicus SB]
          Length = 1193

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +L A   + G G+NLQ   +++V + L W+    +Q   RI      + G     
Sbjct: 582 DPEVQVLLA-TDAAGEGINLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQTEVC 634

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            ++ L+A  T +  V ++L  K
Sbjct: 635 HLWNLVADETREGDVYRKLLDK 656


>gi|222622622|gb|EEE56754.1| hypothetical protein OsJ_06290 [Oryza sativa Japonica Group]
          Length = 148

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D++    Q  N     +LF    +CG G++L  G + ++   +  +    +Q I R    
Sbjct: 10  DREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVTRQAIGR---- 64

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 65  -AFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 99


>gi|147860973|emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]
          Length = 2416

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIEKANAAPIIVAY 75
            G  IEA       +KC +     + +        V +  + A     +         VA 
Sbjct: 2190 GTKIEAVTRRILWIKCTEPKAKILVFSSWNDVLNVLEHALNANNITYVRMKGGRKSHVAI 2249

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                   +   A   G+T  + P    E+    + +L        +GLNL    + +V  
Sbjct: 2250 S--HFRRQRTSAEGNGQTHAQQPEPEPEF----VQVLLLLIQHGANGLNLLEAQH-VVLV 2302

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                +     Q I R+      + G +    V+  I ++T++E + +  R+++T
Sbjct: 2303 EPLLNPAAEAQAISRV-----HRIGQENRTLVHRFIVKDTVEESIYKLNRSRNT 2351


>gi|331245308|ref|XP_003335291.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309314281|gb|EFP90872.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 2163

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 15/163 (9%)

Query: 55   KIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW 104
            K++ +  +I++      ++V   F+  L ++  A           +G  L++        
Sbjct: 1994 KLERMCHLIKQLKEDDRVLVFVQFSDLLDKVYDALEARGIGVARVKGTALNQMKVMSNFQ 2053

Query: 105  NE--GKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            NE    I +L  H   S   G NL           L+    +  +  E   + R R+ G 
Sbjct: 2054 NEVDPHIRVLLLHATDSSASGANLTNANYAFFVSPLFLPTADKFKACETQAIGRLRRYGQ 2113

Query: 162  KRAVFVYYLIAQNTIDELVLQRL--RTKSTIQDLLLNALKKET 202
             + V V  ++  +TID  +      ++K  + + +  A K + 
Sbjct: 2114 MKKVHVIRMLTVDTIDTQIYGFRHDKSKEVLAEEIELARKNQA 2156


>gi|167832513|gb|ACA01823.1| hypothetical protein VPI2_0006c [Vibrio cholerae]
          Length = 1041

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 871 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 929

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 930 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|116072526|ref|ZP_01469793.1| putative DEAD/H helicase [Synechococcus sp. BL107]
 gi|116065048|gb|EAU70807.1| putative DEAD/H helicase [Synechococcus sp. BL107]
          Length = 1076

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           + AL+ ++  A    ++    F      + +     + L++   T + + EG   +L   
Sbjct: 780 VDALKELLISAERTSLMA---FTGRGGEILQKGGVWKALNR-EATKRGFKEGNAEILLCT 835

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQN 174
            A+   GLN Q+ G  L+ + + W+    +Q I RI      + G     + +  L    
Sbjct: 836 DAAA-EGLNFQFCGA-LINYDMPWNPMRVEQRIGRID-----RIGQTHEQMQIVNLHLDG 888

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T++  V + L+ +  + + ++  L+ 
Sbjct: 889 TVEADVYRALKGRIAMFEQVVGKLQP 914


>gi|25029457|ref|NP_739511.1| putative ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|259508359|ref|ZP_05751259.1| ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|23494746|dbj|BAC19711.1| putative ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|259164029|gb|EEW48583.1| ATP-dependent helicase [Corynebacterium efficiens YS-314]
          Length = 941

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 20/173 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN---AAP--IIVAYHFNSDLARLQKAFPQ------- 90
           D  +     H  K  AL   + +      +P  ++V     + L  L++   +       
Sbjct: 410 DLNEQITPYHSNKYNALVNYLTEIGVKKGSPTRVVVFSERVATLHWLRENLIKNLKLPAA 469

Query: 91  -------GRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                  G   +K    + ++     PL +         G+NL    + LV + + W L 
Sbjct: 470 AVEVMHGGLPDEKQMQLVDDFKRTDSPLRILVTGDVASEGVNLHTLCHHLVHYDIPWSLI 529

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             QQ   RI    QR       + +    ++   +  VL RL  +    + LL
Sbjct: 530 RIQQRNGRIDRYGQRNNPQITTLLLEPSDSEGIGEIKVLTRLMEREYEANKLL 582


>gi|332159200|ref|YP_004424479.1| ATP-dependent RNA helicase HepA, putative [Pyrococcus sp. NA2]
 gi|331034663|gb|AEC52475.1| ATP-dependent RNA helicase HepA, putative [Pyrococcus sp. NA2]
          Length = 1029

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 23/151 (15%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-----QKAFPQGRTL--------DKD 97
           D K K L  I+++       +I+   +   L  L     +K  P+  TL        +KD
Sbjct: 389 DTKAKELLKIVDEHLEKGNKVIIFTEYLDTLFYLNEILGEKYGPERVTLIYGSMKPEEKD 448

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               + W E    +L A   + G  L+LQ   N+++ + + W+   + Q I R+      
Sbjct: 449 ESVRKLWAEDGASILIA-TDAAGESLDLQ-AANVVINYEIPWNPVVYIQRIGRV-----Y 501

Query: 158 QAGFKRAV-FVYYLIAQNTIDELVLQRLRTK 187
           + G K+ V F+Y ++    ++  VL+ +  K
Sbjct: 502 RYGQKKPVIFIYGILPVFKVERRVLEVVLDK 532


>gi|115374698|ref|ZP_01461975.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115368269|gb|EAU67227.1| helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 937

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +     T ++    ++++       +     +   GLNLQ+  N++V + L W+ +  +Q
Sbjct: 500 SGDVASTPEERRALVEDFRHRMQ--ILICTEAGAEGLNLQF-CNLVVNYDLPWNPQRVEQ 556

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G +R V V   +  QN  D  + + L  K  + D +  A
Sbjct: 557 RIGRC-----HRYGQQRDVLVINFLNRQNAADARLFELLEKKLNLFDGVFGA 603


>gi|325680385|ref|ZP_08159938.1| helicase C-terminal domain protein [Ruminococcus albus 8]
 gi|324107908|gb|EGC02171.1| helicase C-terminal domain protein [Ruminococcus albus 8]
          Length = 943

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           S+  K L+L   + Y    K      D++I      IE        +A     DL    K
Sbjct: 419 SRYTKLLELLRSSEYNWNPKKV----DDRIVIFTERIETMK----FLAKQLREDLHMSDK 470

Query: 87  ---AFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                  G T  +    ++E+   + P+ +         GLNL Y  + L+ F + W L 
Sbjct: 471 QVVEISGGMTDMEQQRVVEEFGRTEAPVRILVASDVASEGLNLHYLSHRLIHFDIPWSLM 530

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKST 189
             QQ   RI    Q     KR    Y LI+      +   D  +++ L  K  
Sbjct: 531 VFQQRNGRIDRYGQ----EKRPDIRYMLISSKNERIKG--DMRIIRILVEKEE 577


>gi|302421852|ref|XP_003008756.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351902|gb|EEY14330.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 2359

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKA-LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           C  +A  A+  D+EK    V ++K+KA L   + + +   + +    + D   ++     
Sbjct: 753 CSAMARSAL--DDEKALLFVSNKKLKAQLFDALAEDDNVDVYMTTGTHHDTDAIRYF--- 807

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASC-GHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      +    GK  +L     S    G NL    N ++F +       +  M  
Sbjct: 808 ----------KEPNENGKTKVLVQSLMSEESAGTNLTE-ANHVMFAAPLHTDRRNHYMYM 856

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTK 187
           R    R  + G  R V VY+ +  +T++  VL+ RLR K
Sbjct: 857 RQARGRAIRFGQTRPVKVYHFVTAHTMEVDVLEHRLRHK 895



 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA-LEVIIEKANA 68
            +L        ++    ++K +K L +    V  D+EK    V ++K+KA L   + + + 
Sbjct: 2114 QLISATAASTLDFEGKSAKVMKILDVIRTDV-KDDEKALLFVSNKKLKAQLFDALAEDDN 2172

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC-GHGLNLQY 127
              + +    + D   ++                +    GK  +L     S    G NL  
Sbjct: 2173 VDVYMTTGTHHDTDAIRYF-------------KEPNENGKTKVLVQSLMSEESAGTNLTE 2219

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRT 186
              N ++F +       +  M  R    R  + G  R V VY+ +  +T++  VL+ RLR 
Sbjct: 2220 -ANHVMFAAPLHTDRRNHYMYMRQARGRAIRFGQTRPVKVYHFVTAHTMEVDVLEHRLRH 2278

Query: 187  K 187
            K
Sbjct: 2279 K 2279


>gi|197121019|ref|YP_002132970.1| SNF2-related protein [Anaeromyxobacter sp. K]
 gi|196170868|gb|ACG71841.1| SNF2-related protein [Anaeromyxobacter sp. K]
          Length = 892

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 26/178 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
           +++ ++  ++  GA      +       EK KAL  +          ++V   F  DL  
Sbjct: 350 SARLIRNRRVKVGAFTSRVLRRVDVGEGEKPKALVDLCAGLARGGEKVLV---FGGDLEA 406

Query: 84  LQKA-------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           L+               +    +L+     +  + + + P+L     S G G N Q+  +
Sbjct: 407 LRGLQGGLAEAGLEALLYDDAPSLEARDRLVARFRDPEGPMLLLSGESGGEGRNFQF-AH 465

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            LV   L       +Q I R+      + G  R V ++  +     DE  L  L  K 
Sbjct: 466 HLVCADLPASPLVLEQRIGRLD-----RLGQTRPVEIHVPVEPG--DEAFLADLYEKE 516


>gi|53802914|ref|YP_115393.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53756675|gb|AAU90966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 1212

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 91  GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G   ++     + + N+  + +L A   + G G+NLQ   N++V + L W+    +Q   
Sbjct: 570 GVKREERRKVQELFRNDPAVRVLVA-TDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFG 627

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI      + G      ++ ++A  T +  V QRL  K  I+   L  
Sbjct: 628 RI-----HRIGQTEVCHLWNMVASETREGDVFQRLFEKLEIERQALGG 670


>gi|310822711|ref|YP_003955069.1| Helicase/SNF2 domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395783|gb|ADO73242.1| Helicase/SNF2 domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 926

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +     T ++    ++++       +     +   GLNLQ+  N++V + L W+ +  +Q
Sbjct: 489 SGDVASTPEERRALVEDFRHRMQ--ILICTEAGAEGLNLQF-CNLVVNYDLPWNPQRVEQ 545

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G +R V V   +  QN  D  + + L  K  + D +  A
Sbjct: 546 RIGRC-----HRYGQQRDVLVINFLNRQNAADARLFELLEKKLNLFDGVFGA 592


>gi|212543375|ref|XP_002151842.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210066749|gb|EEA20842.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1479

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---IQEW-NEGKIPLLFA 114
            L  + E    A  IV   +   L  L  AF + +           IQ +  +        
Sbjct: 1240 LMWLREHDPGAKSIVFSQYRDFLGVLATAFSRFKIGYSSVEAKDGIQRFKEDPAAECFLL 1299

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            H  +   GLNL    + +       +     Q I R+      + G  R   V+  +  +
Sbjct: 1300 HARAHSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPTTVWMYLVSD 1353

Query: 175  TIDELVLQ 182
            T++E + Q
Sbjct: 1354 TVEESIYQ 1361


>gi|323447772|gb|EGB03682.1| hypothetical protein AURANDRAFT_8383 [Aureococcus anophagefferens]
          Length = 88

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           D  R++ +             ++ +     +  +      +   G+NL    N +V F  
Sbjct: 6   DFFRIEGSVAAAE----RQKMVEAFEADGARARVFLLSTKAGNMGINL-VAANRVVLFDA 60

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            W+       I+R  + R  + G  + V++Y L
Sbjct: 61  CWN-----PAIDRQALFRCFRYGQTKHVYIYRL 88


>gi|301299740|ref|ZP_07205990.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852671|gb|EFK80305.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 628

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 27/207 (13%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEKANAAPII 72
           + G++     +ASK  K  Q ++  VY        E    D  IK +  ++  +    ++
Sbjct: 412 IDGDSYSWDQNASKIEKENQ-SDIEVYKRFSLEDIETPKFDRGIKLITDLV--SEGKKVL 468

Query: 73  VAYHFNSDLARLQKAFPQ---------GRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHG 122
           V   F   + ++++   +         G T  +D    I E+ +G   +L ++P + G  
Sbjct: 469 VWGMFVGTMHKIKRYLDEKGLNTILVYGETPKQDREELINEFRDGAAQVLISNPNTLGES 528

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT------I 176
           ++L    +  V+F   ++L    Q  +RI         + R    YYL+++        I
Sbjct: 529 ISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPDNQYTR---YYYLMSKGDVAHQSFI 585

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETI 203
           DE+V +RL+ K  +   +++A++   +
Sbjct: 586 DEMVYRRLKEKEQV---MMDAIEGPML 609


>gi|254848876|ref|ZP_05238226.1| helicase [Vibrio cholerae MO10]
 gi|254844581|gb|EET22995.1| helicase [Vibrio cholerae MO10]
          Length = 718

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 440 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 498

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 499 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 548


>gi|290960098|ref|YP_003491280.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260649624|emb|CBG72739.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 584

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
                   +V   F   L  L +   +       G T D+D    +   +    +L ++P
Sbjct: 413 NAEQGRKTLVWTTFVRSLTTLAQMLEKFGPAVVYGGTPDRDEQLRRFREDPSCMVLISNP 472

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A+ G G++L +  +  V+    +      Q ++RI        G    V V  + A+NTI
Sbjct: 473 ATLGEGISLHHVCHDAVYVDRDFMAGRFLQSLDRIHRLGL-APGTDTHVTV--IAARNTI 529

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           DE+V  RL  K      +L+
Sbjct: 530 DEVVEIRLDQKLEFMGKILD 549


>gi|302665555|ref|XP_003024387.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291188439|gb|EFE43776.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 2047

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGR 92
                ++ +     +    K  A+  ++E     P    +++   F   +    KA     
Sbjct: 1835 CHPEWHTQTDKLAKYGSSKFTAVIELLEDTEKVPADDQVLLFIQFPELMDAASKALEAAS 1894

Query: 93   TL-------DKDPCT-IQEWNEGKIPL----LFAHPAS-CGHGLNLQYGGNILVFFSL-- 137
                     D+ P + I E+  GK  +    L  +       GLNLQ   N ++FF    
Sbjct: 1895 IPHTVIQPGDRTPTSKISEFQNGKESVKSKVLILNLGDVTASGLNLQN-ANHIIFFGPLV 1953

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 ++   +    + R R+ G  + V +Y+++A   ++  + +  R K  +  
Sbjct: 1954 ARSQYDYDSGMA-QAIGRSRRYGQLKHVHIYHVLALRRVEVNIFE-QRRKQYLAK 2006


>gi|147675032|ref|YP_001217302.1| hypothetical protein VC0395_A1359 [Vibrio cholerae O395]
 gi|146316915|gb|ABQ21454.1| hypothetical protein VC0395_A1359 [Vibrio cholerae O395]
 gi|227013661|gb|ACP09871.1| putative helicase [Vibrio cholerae O395]
          Length = 1146

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 868 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 926

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 927 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 976


>gi|224010774|ref|XP_002294344.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969839|gb|EED88178.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1504

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 22/172 (12%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
            A  +     K LQL N     +  ++  E+                    IV   F    
Sbjct: 1281 ASKAKYTIDKLLQLRN-----ESSRNVSELAVRMFSKSSTHSSSHRPLKAIVFSQFRPIY 1335

Query: 82   A----RLQKAFPQG-----RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                 RL + F                 ++++  + +  ++        HGL+L +    
Sbjct: 1336 EYFGDRLIREFGGACVADFSFTKTRNEELKKFRLDPQCFIMLLS-KQGSHGLDLSF-CTH 1393

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            + F    +D    QQ++ R       + G    V+V  L A+++I+E++ + 
Sbjct: 1394 IFFLDTIYDKSLEQQVVAR-----AYRMGATGPVYVEQLTAKDSIEEVMNEM 1440


>gi|121585835|ref|ZP_01675629.1| hypothetical protein VC274080_1814 [Vibrio cholerae 2740-80]
 gi|121727705|ref|ZP_01680800.1| hypothetical protein VCV52_1735 [Vibrio cholerae V52]
 gi|153819628|ref|ZP_01972295.1| hypothetical protein A5C_1794 [Vibrio cholerae NCTC 8457]
 gi|153821151|ref|ZP_01973818.1| hypothetical protein A5E_2062 [Vibrio cholerae B33]
 gi|227081906|ref|YP_002810457.1| putative helicase [Vibrio cholerae M66-2]
 gi|255744824|ref|ZP_05418774.1| helicase putative [Vibrio cholera CIRS 101]
 gi|262161893|ref|ZP_06030911.1| helicase putative [Vibrio cholerae INDRE 91/1]
 gi|262169761|ref|ZP_06037452.1| helicase putative [Vibrio cholerae RC27]
 gi|298498169|ref|ZP_07007976.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121549973|gb|EAX59991.1| hypothetical protein VC274080_1814 [Vibrio cholerae 2740-80]
 gi|121630002|gb|EAX62410.1| hypothetical protein VCV52_1735 [Vibrio cholerae V52]
 gi|126509832|gb|EAZ72426.1| hypothetical protein A5C_1794 [Vibrio cholerae NCTC 8457]
 gi|126521347|gb|EAZ78570.1| hypothetical protein A5E_2062 [Vibrio cholerae B33]
 gi|227009794|gb|ACP06006.1| putative helicase [Vibrio cholerae M66-2]
 gi|255737295|gb|EET92690.1| helicase putative [Vibrio cholera CIRS 101]
 gi|262021995|gb|EEY40705.1| helicase putative [Vibrio cholerae RC27]
 gi|262028625|gb|EEY47280.1| helicase putative [Vibrio cholerae INDRE 91/1]
 gi|297542502|gb|EFH78552.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 1149

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 871 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 929

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 930 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|15227191|ref|NP_179232.1| DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding /
           DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|4544390|gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251398|gb|AEC06492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 888

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 23/136 (16%)

Query: 59  LEVIIEKANAAPIIVAYH------FNSDLARLQKAFPQGRTL---------DKDPCTIQE 103
           L  + + A    ++V         F   LA L K +  G+ +         ++   +++ 
Sbjct: 702 LINLCDSA-GEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMET 760

Query: 104 WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N      + F    +CG G++L  G + ++   +  +    +Q I R       + G K
Sbjct: 761 FNSSPDAKIFFGSIKACGEGISL-VGASRILILDVPLNPSVTRQAIGR-----AFRPGQK 814

Query: 163 RAVFVYYLIAQNTIDE 178
           + V  Y LIA ++ +E
Sbjct: 815 KMVHAYRLIAGSSPEE 830


>gi|18254358|gb|AAL66728.1|AF459401_1 putative helicase [Vibrio cholerae]
          Length = 507

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 234 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 292

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 293 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 342


>gi|297571358|ref|YP_003697132.1| SNF2-related protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931705|gb|ADH92513.1| SNF2-related protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 948

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ +     L     +   G+NLQ+  ++LV + L W+ +  +Q I R+   
Sbjct: 484 DRRKALVDEFRDRGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRIEQRIGRV--- 537

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  + +E +L+ L  K  +   +  A
Sbjct: 538 --HRFGQKHNVIVVNFSNKGNLAEERILELLTEKFQLFTSVFGA 579


>gi|320449563|ref|YP_004201659.1| type III restriction enzyme subunit res [Thermus scotoductus SA-01]
 gi|320149732|gb|ADW21110.1| type III restriction enzyme, subunit res [Thermus scotoductus
           SA-01]
          Length = 1189

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     + + ++ ++ +L A   + G G+NLQ   +++V + L W+    +Q   RI 
Sbjct: 565 REERSKAQEAFLHDPEVQVLVA-TDAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI- 621

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                + G      ++ L+A  T +  V   L  K
Sbjct: 622 ----HRIGQTEPCHMWNLVAIETREGDVYHTLLRK 652


>gi|134055899|emb|CAK37377.2| unnamed protein product [Aspergillus niger]
          Length = 987

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 16/157 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
            D  +       + +  L  I +       IV   +   L  L   F Q           
Sbjct: 825 IDSPQANDVYPSKLVTLLTDIRKHYLEDKSIVFSFWRQSLDVLGGMFDQNSISFCRVDGI 884

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +     +  N   + +L     +   GLN     + +      W+     Q I R
Sbjct: 885 MSPMKRQTMLEEFQNNSAVRVLLMTIGTGAVGLNNLSVASRVHILEPQWNPSVESQAIGR 944

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                  + G  + ++V   + + T+++++      K
Sbjct: 945 -----ALRWGQGKKIYVIRYVMEGTVEKIIESGQLRK 976


>gi|229508136|ref|ZP_04397641.1| hypothetical protein VCF_003370 [Vibrio cholerae BX 330286]
 gi|229511625|ref|ZP_04401104.1| hypothetical protein VCE_003034 [Vibrio cholerae B33]
 gi|229518764|ref|ZP_04408207.1| hypothetical protein VCC_002789 [Vibrio cholerae RC9]
 gi|229343453|gb|EEO08428.1| hypothetical protein VCC_002789 [Vibrio cholerae RC9]
 gi|229351590|gb|EEO16531.1| hypothetical protein VCE_003034 [Vibrio cholerae B33]
 gi|229355641|gb|EEO20562.1| hypothetical protein VCF_003370 [Vibrio cholerae BX 330286]
          Length = 932

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 654 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 712

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 713 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 762


>gi|58260784|ref|XP_567802.1| DNA repair protein rad8 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57229883|gb|AAW46285.1| DNA repair protein rad8, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1856

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 54   EKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW 104
             K++ L  +I        ++V   +     ++ +A   G+               T+  +
Sbjct: 1693 AKLEHLVNLIHSIPKDERVLVFLQWEDLAGKVSEALSAGKIPHVTLSGSAKSRANTLDRF 1752

Query: 105  ---NEGKIPLLFAHPA-SCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQ 158
               N     +L      +   G NL    N  +F        L  ++  +E   + R R+
Sbjct: 1753 QSTNADTARVLLLKMNDASAAGSNLTT-ANHAIFLGPLFTNSLFNYR-AVETQAIGRVRR 1810

Query: 159  AGFKRAVFVYYLIAQNTIDELVL--QRLRTKSTI 190
             G ++ V ++ L+A +TID  +   +R   K   
Sbjct: 1811 YGQQKKVHIHRLLALDTIDMTIFNTRRAELKEKT 1844


>gi|254228180|ref|ZP_04921609.1| helicase [Vibrio sp. Ex25]
 gi|262394013|ref|YP_003285867.1| helicase putative [Vibrio sp. Ex25]
 gi|151939253|gb|EDN58082.1| helicase [Vibrio sp. Ex25]
 gi|262337607|gb|ACY51402.1| helicase putative [Vibrio sp. Ex25]
          Length = 1149

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + ++       I ++   +   L+   P + G GL +  G N +V     W+  + 
Sbjct: 871 KAVAKRKSAPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERHWNPAKE 929

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 930 AQATDRV-----YRIGQEKDVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|134117273|ref|XP_772863.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255481|gb|EAL18216.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 2291

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 54   EKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW 104
             K++ L  +I        ++V   +     ++ +A   G+               T+  +
Sbjct: 2128 AKLEHLVNLIHSIPKDERVLVFLQWEDLAGKVSEALSAGKIPHVTLSGSAKSRANTLDRF 2187

Query: 105  ---NEGKIPLLFAHPA-SCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQ 158
               N     +L      +   G NL    N  +F        L  ++  +E   + R R+
Sbjct: 2188 QSTNADTARVLLLKMNDASAAGSNLTT-ANHAIFLGPLFTNSLFNYR-AVETQAIGRVRR 2245

Query: 159  AGFKRAVFVYYLIAQNTIDELVL--QRLRTKSTI 190
             G ++ V ++ L+A +TID  +   +R   K   
Sbjct: 2246 YGQQKKVHIHRLLALDTIDMTIFNTRRAELKEKT 2279


>gi|15641763|ref|NP_231395.1| helicase, putative [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9656282|gb|AAF94909.1| helicase, putative [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 940

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 662 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 720

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 721 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 770


>gi|326479420|gb|EGE03430.1| cytosine-specific DNA methylase [Trichophyton equinum CBS 127.97]
          Length = 2106

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIP 110
             K  A+  ++E A   P         + AR+     Q         T +  N     K  
Sbjct: 1927 SKFTAVIELLEDAKRVPADDQA---LESARIPHTVIQPGDRTPTSKTSEFQNGKESVKSK 1983

Query: 111  LLFAHPAS-CGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +L  +       GLNLQ   N ++FF         ++   +    + R R+ G  + V +
Sbjct: 1984 VLILNLGDVTASGLNLQN-ANHIIFFGPLVARSQYDYNSGMA-QAIGRSRRYGQLKHVHI 2041

Query: 168  YYLIAQNTIDELVLQRLRT 186
            Y+++A  T++  + ++ R 
Sbjct: 2042 YHVLALRTVEVNIFEKRRK 2060


>gi|322412357|gb|EFY03265.1| helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1998

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            R+     RQ    + V +Y+ I + + D
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFD 1988


>gi|323452723|gb|EGB08596.1| hypothetical protein AURANDRAFT_7744 [Aureococcus anophagefferens]
          Length = 129

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 19/131 (14%)

Query: 72  IVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPAS 118
           +V   F S L   +                 +L       + +          LF    +
Sbjct: 3   LVFSRFASFLRAAEAAAAAAGLRTLRIDGAVSLAARQAACERFQRRDARGNVALFITIGA 62

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    + +V    +W+     Q + R       + G  R + V  L  + T++ 
Sbjct: 63  GGEGLNLT-AADAVVLCEPYWNEPVEDQAVAR-----AHRIGRARPLDVVRLHIEKTVEV 116

Query: 179 LVLQRLRTKST 189
            + +  R K+ 
Sbjct: 117 PIAKLKRDKAA 127


>gi|18640171|ref|NP_570245.1| SPV085 putative NPH-I transcription termination factor [Swinepox
           virus]
 gi|18448578|gb|AAL69824.1| SPV085 putative NPH-I transcription termination factor [Swinepox
           virus]
          Length = 632

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 19/201 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            G ++    S+S      QL   +  + +      +   K    E  + ++    I++ Y
Sbjct: 342 SGNDLGGDVSSSDISLLSQLRERSCKFTDVCLRILMSPGKCLVFEPFVNQS-GIGILLLY 400

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK------IPLLFAHPASCGHGLNLQYGG 129
               D+ ++       RT DK    ++ +N+        I +      S G G++     
Sbjct: 401 ---FDVFKISYIEFSSRTKDKRVKMVERFNDKNNTNGDMIKVCVFSL-SGGEGISFFSIN 456

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQ 182
           +I +   + W+    +Q+I R             ++ V V+++IA+      T+DE +L+
Sbjct: 457 DIFIL-DMTWNEASLRQIIGRAIRMNSHMCTPEERKYVNVHFIIARMSNGEPTVDEDLLE 515

Query: 183 RLRTKSTIQDLLLNALKKETI 203
            +RTKS     L   L++ +I
Sbjct: 516 IIRTKSKEFTQLFKILRESSI 536


>gi|15823603|dbj|BAB69051.1| putative RNA polymerase associated protein [Sphaerotilus natans]
          Length = 247

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD-------KDPCTIQEWNEGKIPLLFAHPASCG 120
              +++   + + L  L K   +                 ++ +       +        
Sbjct: 10  GKKVVLFAFYRNTLYYLAKRLAEAGVKSIVLHGGMDKSEVLRSFEGDDSVQILLSSEVAS 69

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-AVFVYYLIAQNTIDEL 179
            G++LQ+  ++LV + L W+    +Q I RI      + G     + ++ L+ ++T+DE 
Sbjct: 70  EGVDLQFS-SLLVNYDLPWNPARIEQRIGRID-----RIGQAEAKILIWNLVYEDTLDER 123

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           V  RL  +  +    L +++
Sbjct: 124 VHDRLLERLNVFRQALGSME 143


>gi|91202363|emb|CAJ75423.1| similar to helicase subunit of dna repair complex [Candidatus
           Kuenenia stuttgartiensis]
          Length = 964

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                ++ DK    +  +      ++     +   G+NLQ+  +++V + L W+ +  +Q
Sbjct: 487 RITGSKSADKRAAIVDYF--RDEAVIMIATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQ 543

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G K  V V   + + N  D+ V Q L+ K  + D +  A
Sbjct: 544 RIGRC-----HRYGQKFDVVVVNFLNKSNAADQRVYQLLKEKFKLFDGIFGA 590


>gi|312222342|emb|CBY02282.1| hypothetical protein [Leptosphaeria maculans]
          Length = 2343

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 19/106 (17%)

Query: 96   KDPCTIQEWNEGKIP-----LLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ---- 145
            +    I+++   + P     L+  +  S    G+NL    N ++F S      +++    
Sbjct: 2171 QSAKIIEDFKNNENPDERRKLVILNLGSESAAGINLTN-ANHIIFVSPLAAKTQYEYDSA 2229

Query: 146  --QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              Q I R      R+ G K+ V++Y+++A+ TID  +++  R K  
Sbjct: 2230 MVQAIAR-----SRRYGQKKKVYIYHVVAERTIDVDIME-HRHKRN 2269


>gi|169602036|ref|XP_001794440.1| hypothetical protein SNOG_03896 [Phaeosphaeria nodorum SN15]
 gi|160706060|gb|EAT89101.2| hypothetical protein SNOG_03896 [Phaeosphaeria nodorum SN15]
          Length = 1444

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGK-IPLLFAHPASCGHGL 123
             A  I+   F   L  L++A  + R       D   IQ +     I        S   GL
Sbjct: 1224 GAKSIIFSQFGDFLEVLREALRKWRIGVSGIIDKEGIQRFKSDAGIECFLLDAKSDSSGL 1283

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            NL      +       +     Q I R+      + G +R   V+  +  +T++E +  
Sbjct: 1284 NL-VNATYVFLCEPLINPAIELQAIARV-----HRIGQQRPTTVFMYLISDTVEEAIYD 1336


>gi|289621334|emb|CBI52117.1| unnamed protein product [Sordaria macrospora]
          Length = 1142

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 49  KEVHDEKIKALEV-IIEKANAAPIIVAYHFN---SDLARLQKA-------FPQGRTLDKD 97
                 K+  L   II    A  I+V Y  +     LA + +        + +G T  + 
Sbjct: 826 ISTASAKLSYLVDQIIRHQEAEQILVFYENDNVAYYLAEVLEVLGIQHLIYAKGITSARK 885

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +  + +  ++    +   +GL+++   + + F +   + +   Q I R      
Sbjct: 886 NQYLATFTLKQQFRVMLMDISQAAYGLDMKT-ASRIYFINPVLNPQVGAQAIGR-----A 939

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           R+    + V V  L+ + +IDE++++R   
Sbjct: 940 RRISQHKPVTVETLVLRGSIDEVIVRRREE 969


>gi|229607712|ref|YP_002878360.1| hypothetical protein VCD_002624 [Vibrio cholerae MJ-1236]
 gi|229370367|gb|ACQ60790.1| hypothetical protein VCD_002624 [Vibrio cholerae MJ-1236]
          Length = 746

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V    +W+  + 
Sbjct: 468 KAVAKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERYWNPAKE 526

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY----YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q  +R+      + G ++ V +Y    +     + D  + + L  K+ ++D ++
Sbjct: 527 AQATDRV-----YRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 576


>gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga
            sputigena Capno]
 gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga
            sputigena Capno]
          Length = 2020

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            + SD   +          ++     +++N GKI ++     +   G+NLQ     +   +
Sbjct: 1693 YKSDEVGI---ITGATNKNQRLDIQEKFNAGKIKIVIGS-EAIQEGMNLQENTTDMYLLT 1748

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L ++    +Q   R+     RQ      V V Y++  ++ID  +LQ+L+ K   Q   + 
Sbjct: 1749 LPYNFTSLRQTEGRM----WRQGNKWENVRVNYMLTNDSIDVFMLQKLQAK---QSRYME 1801

Query: 197  ALKK 200
            A+KK
Sbjct: 1802 AIKK 1805


>gi|298528754|ref|ZP_07016158.1| helicase domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512406|gb|EFI36308.1| helicase domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 955

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++++   + PL L         G+NL Y  + L+ F + W L   QQ   RI   
Sbjct: 493 EQQRVVEDFGRDESPLRLLIASDVASEGINLHYLCHRLIHFDIPWSLMVFQQRNGRIDRY 552

Query: 155 RQRQ-------AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q +       A   R   ++        D  +L+ L +K  
Sbjct: 553 GQERTPLISYLAIQSREPKIHG-------DMRILELLISKDE 587


>gi|270015594|gb|EFA12042.1| hypothetical protein TcasGA2_TC001459 [Tribolium castaneum]
          Length = 552

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           L +   M++     R  + G  + V VY L+ + TIDE++L R   K  +  +++
Sbjct: 436 LTDENPMVDLQAQDRCHRIGQTKPVMVYSLVTKGTIDEIILNRADVKKRLGKVVI 490


>gi|153004208|ref|YP_001378533.1| helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027781|gb|ABS25549.1| helicase domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 921

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 20/138 (14%)

Query: 70  PIIVAYHFN---SDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPAS 118
             +V   F      LARL KA     T         DK    ++E+       +     +
Sbjct: 439 KAVVFTEFRRTQDYLARLLKAKGYTVTCLSGDVGGTDKRQALVEEFRNRTQ--ILIMTEA 496

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTID 177
              GLNLQ+  N++V + L W+ +  +Q I R       + G +R V V   +  QN  D
Sbjct: 497 GAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC-----HRYGQQRDVLVLNFLNRQNAAD 550

Query: 178 ELVLQRLRTKSTIQDLLL 195
             + + L  K  + D + 
Sbjct: 551 NRLYELLSQKLALFDGVF 568


>gi|301769905|ref|XP_002920371.1| PREDICTED: putative DNA repair and recombination protein
           RAD26-like, partial [Ailuropoda melanoleuca]
          Length = 802

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDP-CT 100
             K+K L+ ++   + N   I++       L  LQ+             G T  ++    
Sbjct: 694 SGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGLDYRRLDGSTKSEERIKI 753

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           ++E+N    + +      + G GLN   G N++V F   W+     Q I+
Sbjct: 754 VKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQAID 802


>gi|189192276|ref|XP_001932477.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187974083|gb|EDU41582.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 2299

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 79/201 (39%), Gaps = 28/201 (13%)

Query: 10   ELYCDLQGENIEAFNSASKT----VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +   + + ++    +   K      + + +AN  +   E     ++  +K+ A+  +I +
Sbjct: 2027 QSCLEARSDDETCVHPGCKARLGDGELIPMAN--LGSKESHDPDQIFGKKLHAIVQLISE 2084

Query: 66   ANAAPIIVAYHFNSDLAR-LQKAFPQGRTLD------KDPCTIQEWNEGKIPLL------ 112
               A   + +  N DL   +++     +         +    I+E+   K P        
Sbjct: 2085 MPPADQGIIFAPNDDLMSVIERVLDHYKIRYATIRQTRIAQVIEEFKTNKKPATMKKLLI 2144

Query: 113  --FAHPASCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                +P++   G+NL    N + F S     D  ++   +    + R R+ G  + V +Y
Sbjct: 2145 LNLGNPSAA--GINL-INANHVFFVSPLHADDQYKYDSAMA-QAIARSRRHGQGKTVHIY 2200

Query: 169  YLIAQNTIDELVLQRLRTKST 189
            +++A  TID  +L+  R K T
Sbjct: 2201 HVVALRTIDVDILE-HRHKRT 2220


>gi|121533618|ref|ZP_01665445.1| helicase domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307609|gb|EAX48524.1| helicase domain protein [Thermosinus carboxydivorans Nor1]
          Length = 1163

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 32/194 (16%)

Query: 6   KFQREL----YCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEV-----HD 53
           + + E+    Y + + + + A  +  K     K LQ  N    +D     +++     H 
Sbjct: 460 ELEAEIDKLRYLEKRAKELRASGADRKWDELSKLLQ--NETAMFDAGGMRRKLVIFTEHR 517

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
           + +  L   I         VA         +Q     GR   K    +  +   K   + 
Sbjct: 518 DTLNYLAEKIRSLLGRDDAVA--------TIQGGM--GREERKRVQEL--FTHDKHVHIL 565

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NLQ   N+++ + L W+    +Q   RI      + G      ++ ++A 
Sbjct: 566 IATDAAGEGINLQR-ANLMINYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNMVAV 619

Query: 174 NTIDELVLQRLRTK 187
           +T +  V  RL  K
Sbjct: 620 DTREGEVYFRLLKK 633


>gi|329734512|gb|EGG70824.1| helicase C-terminal domain protein [Staphylococcus epidermidis
           VCU028]
          Length = 624

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 28/176 (15%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
           K V   K +    +IE   +    ++V   F   + ++ K   +         G T  +D
Sbjct: 440 KNVTSPKFEKGIELIENLVSQGKKVLVWGLFVGTMNKINKRLLESDINSILIYGETPKED 499

Query: 98  PCT-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +  G   +L ++P + G  ++L    +  ++F   ++L    Q  +RI     
Sbjct: 500 RVDMINNFRNGNAQVLISNPNTLGESISLHQTVHDAIYFEYNFNLTFMLQSRDRI----- 554

Query: 157 RQAGFKRAVF--VYYLIA------QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G     +   YYL++      +  ID+ V  RL+ K    D++LNA+   T+ 
Sbjct: 555 HRLGLNNNQYTRYYYLMSEGDRAHKGFIDKAVYNRLKEKE---DVMLNAIDGNTLK 607


>gi|327261911|ref|XP_003215770.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
            SHPRH-like [Anolis carolinensis]
          Length = 1698

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 43   DEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----L 94
            +++   K  H  K++A    L+ I  K   A  +V   +   L  + K F         +
Sbjct: 1505 EDDIPVKGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKYFTTLECPLACI 1564

Query: 95   DKDPCTIQEWN-------------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             K    I  +              + KI +L     +  +GLN+     +L       + 
Sbjct: 1565 GKCXLCICVFPISIFXENLSAFKYDPKINILLLPLHTGSNGLNIIEATQVL-LVEPILNP 1623

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                Q I R+      + G  +   V+  + + TI+E +   ++T
Sbjct: 1624 AHELQAIGRV-----HRIGQTKPTIVHRFLIKATIEERMQTMMKT 1663


>gi|229143655|ref|ZP_04272078.1| hypothetical protein bcere0012_8220 [Bacillus cereus BDRD-ST24]
 gi|228639834|gb|EEK96241.1| hypothetical protein bcere0012_8220 [Bacillus cereus BDRD-ST24]
          Length = 642

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 26/178 (14%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------L 84
           +L N  + Y+         D  +K ++ +I +     +IV   +   + R         +
Sbjct: 433 ELINTLINYERTNSVPPKFDAALKLIQDLIRR--DEKVIVWAIYIDTVERFSDYLLENGI 490

Query: 85  QKAFPQGRTL----------DKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +     G+T           +     I+E+  +E +  ++ A+P +    ++L    +  
Sbjct: 491 ECKILYGKTKVESEGLDEAVETREKIIREFHSDESEFKVIIANPFAVAESISLHKACHNA 550

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++    +D   + Q  +RI        G       YYLI +N+IDE++  RL  K  +
Sbjct: 551 IYLERNFDGARYVQSKDRIHRYG---LGMNTITNYYYLITENSIDEVIDDRLIEKENL 605


>gi|170780922|ref|YP_001709254.1| hypothetical protein CMS_0479 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155490|emb|CAQ00599.1| hypothetical protein CMS0479 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 197

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 10/140 (7%)

Query: 64  EKANAAPIIVAYHFNS---DLARLQKAF----PQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
             A     +V   F      L R+   F      G T D+D    +  ++    +L ++P
Sbjct: 24  NAARGRKTLVWSTFIRSINTLERVLGRFGPAVVHGGTPDRDEQIRRFKHDDDCMVLLSNP 83

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           A+ G G++L +  +  V+    +      Q ++RI        G    V V  L ++ T+
Sbjct: 84  ATLGEGISLHHECHDAVYVDRDFAAGRFLQSLDRIHRLGL-PPGTSTRVTV--LASERTV 140

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           DE+V  RL  K      +L+
Sbjct: 141 DEVVAARLGAKLAFMGGILD 160


>gi|320104896|ref|YP_004180487.1| SNF2-like protein [Isosphaera pallida ATCC 43644]
 gi|319752178|gb|ADV63938.1| SNF2-related protein [Isosphaera pallida ATCC 43644]
          Length = 955

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             +   R +D     I+ +       +     +   G+NLQ+  +++V + L W+ +  +
Sbjct: 476 GRWSGSRAVDVRTALIEHF--RDHATILLATEAAAEGINLQF-CSLVVNYDLPWNPQRIE 532

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +  +N  D+ VL+ L  K  +   +  A
Sbjct: 533 QRIGRC-----HRYGQKHDVVVINFLNERNAADQRVLELLSEKFNLFSGVFGA 580


>gi|257440757|ref|ZP_05616512.1| ATP-dependent helicase [Faecalibacterium prausnitzii A2-165]
 gi|257196731|gb|EEU95015.1| ATP-dependent helicase [Faecalibacterium prausnitzii A2-165]
          Length = 961

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 31/205 (15%)

Query: 2   KQYHKFQRELYCDLQG--------ENIEAFNSASKTVKCLQLANGAVY---YDEEKHWKE 50
           K Y K+  +   D++           +   N  ++  K L+L     Y     +      
Sbjct: 401 KLYKKYTADDISDIRLLEELHTALGQVTPEN-FTRYQKLLELLRSDSYGWNPKDPGDRVV 459

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGK 108
           +  E+I+ +  + E       +     +S +  +                ++++   E  
Sbjct: 460 IFTERIETMNYLAEHLRTDLGL----KSSAIQEISGGMSDAE----QQRIVEDFGRTESS 511

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L A   +   GLNL Y  + L+ F + W L   QQ   RI    Q     KR    Y
Sbjct: 512 TRILVASDVAS-EGLNLHYLSHRLIHFDIPWSLMVFQQRNGRIDRYGQ----QKRPDIRY 566

Query: 169 YLIAQNTI----DELVLQRLRTKST 189
            LI  N      D  +++ L  K  
Sbjct: 567 LLIESNNKQIKGDMRIIEILIQKEE 591


>gi|223039721|ref|ZP_03610006.1| helicase domain protein [Campylobacter rectus RM3267]
 gi|222878913|gb|EEF14009.1| helicase domain protein [Campylobacter rectus RM3267]
          Length = 463

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT------IQEWNE 106
           +++ + +  I   +N    ++    N + A L+K       +            + ++  
Sbjct: 283 EQRCEKVAEICNTSNE-NFLIWCELNDEGAMLKKLVADSVEIKGSDSDEFKARAMSDFAN 341

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GKI  L   P   G G+N Q     +++ SL    E   Q + R+      + G  R V 
Sbjct: 342 GKIKCLITKPKIAGFGMNWQKHCANVIYASLSDSFEGFFQSLRRV-----YRYGQTREVT 396

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y + ++   +  VL  +R K      ++  
Sbjct: 397 CYIITSE--AEANVLANIRRKEAEFYKMIEG 425


>gi|150863827|ref|XP_001382433.2| DNA-dependent ATPase of the nucleotide excision repair factor 4
            complex [Scheffersomyces stipitis CBS 6054]
 gi|149385083|gb|ABN64404.2| DNA-dependent ATPase of the nucleotide excision repair factor 4
            complex [Scheffersomyces stipitis CBS 6054]
          Length = 1343

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGL +    + + F S  W      Q I+R       + G  + V V  L+
Sbjct: 1127 LIMDLRLAAHGLTIVEATH-VYFMSPVWQRSIEAQAIKR-----AHRIGQTKDVHVETLV 1180

Query: 172  AQNTIDELVLQRLRT 186
             + T++E + +R  +
Sbjct: 1181 LRGTLEEEIYKRRTS 1195


>gi|258514692|ref|YP_003190914.1| helicase domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778397|gb|ACV62291.1| helicase domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 945

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 95  DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++ + +   P+ L         G+NL +  + L+ F + W L   QQ   RI  
Sbjct: 485 GEQQAVVESFGQENSPVRLLIASDVASEGINLHFLSHRLIHFDIPWSLMTFQQRNGRID- 543

Query: 154 TRQRQAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKS 188
               + G +    +YYL+ + +      D  +L+ L  K 
Sbjct: 544 ----RYGQECTPEIYYLVTETSNPKIRGDVRILEVLIQKD 579


>gi|262383481|ref|ZP_06076617.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B]
 gi|262294379|gb|EEY82311.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B]
          Length = 932

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 30/169 (17%)

Query: 53  DEKIKALEVIIEKANAAPIIVA----YHFNSDLARLQKAFP---------QGRTLDKD-P 98
           D   K L  +  K     I++             R+ + F           G  LD +  
Sbjct: 410 DAFKKVLTELWNKNPKERIVIFTERIATMKYLEERIIREFKLNKEQVVRFDGSLLDTEQE 469

Query: 99  CTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +   + KI +      S   G+NL Y  +I+  + + W L   +Q   RI    Q
Sbjct: 470 AMVGNFAKEDSKISVF-ISSDSGSQGVNLHYYCHIMFNYDIPWSLITLEQRNGRIDRYGQ 528

Query: 157 RQAGFKRAVFVYYLIAQNTIDE------LVLQRLRTK-STIQDLLLNAL 198
           +Q    R V +YYL+ + T DE       ++ +L  K   + D L +A+
Sbjct: 529 KQ----RPV-IYYLVNK-TNDEGLRSDFTIIDKLLHKEQEVHDTLGDAM 571


>gi|296805275|ref|XP_002843462.1| ATP-dependent DNA helicase [Arthroderma otae CBS 113480]
 gi|238844764|gb|EEQ34426.1| ATP-dependent DNA helicase [Arthroderma otae CBS 113480]
          Length = 1469

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 12/143 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGL 123
             A  IV       L  L +AF     G +    P  I+ + E         H  +   GL
Sbjct: 1219 GAKSIVFSQDKEFLGILSQAFYRFKIGYSSIDTPFGIERFKEDHTKECFLLHAKAHASGL 1278

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +       +     Q I R+      + G  +   V+  +  NT++E + Q 
Sbjct: 1279 NLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHQDTTVWMYLVANTVEESIYQI 1332

Query: 184  --LRTKSTIQDLLLNALKKETIH 204
               R    I      +LKK+  H
Sbjct: 1333 SVARRLEHIAQRREESLKKQEKH 1355


>gi|308803538|ref|XP_003079082.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
            superfamily (ISS) [Ostreococcus tauri]
 gi|116057536|emb|CAL51963.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
            superfamily (ISS) [Ostreococcus tauri]
          Length = 2061

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
                    + A +  ++      + +G V     K         I  ++ I    +   I
Sbjct: 1876 CATRDSSVVTAVSLGTEVGAKAGMTDGGVGVHGSKI--------IDLVKHIKSVPDDERI 1927

Query: 72   IVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIP------LLFAHPA 117
            +V   F   + ++  A  +             +    + E+ +  +       LL     
Sbjct: 1928 LVFVQFPDLMLQVSNALNEAGIKTLKLKGSVHQQTGALDEFQKENLKKDDARVLLLLSRD 1987

Query: 118  SCGHGLNLQYGGN-ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                G NL    + I V   L    +E+    E   + R R+ G +R V ++  IA+++I
Sbjct: 1988 ESASGANLTTANHAIFVHPLLTNSAQEYI-ASETQAIGRIRRYGQQREVRIWRFIARDSI 2046

Query: 177  DELVL 181
            D  +L
Sbjct: 2047 DSEIL 2051


>gi|322411801|gb|EFY02709.1| SNF2 family protein [Streptococcus dysgalactiae subsp. dysgalactiae
            ATCC 27957]
          Length = 1826

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1733 DANTDEKKNSLSRKVNSGEVRILIASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1792

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            R+     RQ      V +Y+ I + + D
Sbjct: 1793 RLI----RQGNMHNEVDIYHYITKGSFD 1816


>gi|294656835|ref|XP_459156.2| DEHA2D15488p [Debaryomyces hansenii CBS767]
 gi|199431779|emb|CAG87327.2| DEHA2D15488p [Debaryomyces hansenii]
          Length = 1346

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 19/152 (12%)

Query: 47   HWKEVHDEKIKALEV-IIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTL---------- 94
                    K+  L   ++E        +V + F      L +                  
Sbjct: 1044 RILGTASAKLSYLASRLLEHQQEKIKSLVFFEFEDSAYYLTELLEVLGIKYILYATFINP 1103

Query: 95   -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              +     +  N      L        HGL +      + F +  W      Q I+R   
Sbjct: 1104 SQRTNNLAEFSNFPGGVTLIMDLRLASHGLTI-ISATRVYFINPVWQRSIEAQAIKR--- 1159

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                + G  + V+V  L+ + T++E + +R  
Sbjct: 1160 --AHRIGQTKDVYVETLVLKGTLEEEIYRRRS 1189


>gi|320584136|gb|EFW98347.1| DNA-dependent ATPase of the nucleotide excision repair factor 4
           complex [Pichia angusta DL-1]
          Length = 1082

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 47  HWKEVHDEKIKALEV-IIE-KANAAPIIVAYHFNSDLARLQKAFP-------------QG 91
                   K+  L   ++E +      IV Y F +    L +                + 
Sbjct: 799 RILGTASVKLSYLTSRLLENQTVGIKSIVFYEFENSAYYLTELLDLLGMNYLMYSTYVKI 858

Query: 92  RTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +      W+    G I +L        HGL +    N + F +  W+     Q I
Sbjct: 859 AERSNNLTKFDLWDTSVSGGI-VLVMDVKLASHGLTIISATN-VFFLNPIWNKTVEAQAI 916

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKSTIQDLLLN 196
           +R       + G  + V+V  LI  NTI+ E+ L+R +TK      L++
Sbjct: 917 KR-----SHRIGQTKEVYVETLILDNTIEKEMYLKRSQTKVDETKELID 960


>gi|330933825|ref|XP_003304312.1| hypothetical protein PTT_16857 [Pyrenophora teres f. teres 0-1]
 gi|311319144|gb|EFQ87589.1| hypothetical protein PTT_16857 [Pyrenophora teres f. teres 0-1]
          Length = 605

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 64  EKANAAPIIVAYHFNS-----DLARLQKAFPQGR------TLDKDPCTIQEWNEGKIPLL 112
           E +    II+   F S     D+A  +  +   R        DK+       ++  + +L
Sbjct: 381 ECSQNTKIIIYSEFLSALDVADVALARVGYTTVRYDGWLSEKDKEVAKNGFLSDSIVDIL 440

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNL    ++++  +  W+     Q   R       + G  + V V Y  +
Sbjct: 441 LMTIRSGGVGLNLPV-ASVVIHLTPCWNPALTVQCNSR-----AIRPGQLKFVQVVYFHS 494

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
            ++++ ++     +K+     +++
Sbjct: 495 TDSLERVIRDIANSKAVKASEVID 518


>gi|117924655|ref|YP_865272.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608411|gb|ABK43866.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 954

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + + + P+ L         G+NL Y  + ++ F + W L   QQ   RI   
Sbjct: 489 EQQQVVEAFGKDEEPVRLLIASDVASEGINLHYLCHRMIHFDIPWSLMVFQQRNGRID-- 546

Query: 155 RQRQAGFKRAVFVYYLIA---QNTI--DELVLQRLRTKST 189
              + G ++   + YL      + I  D  +L+ L  K  
Sbjct: 547 ---RYGQEQTPHIVYLTTNSQNDKIRGDMRILELLIQKDE 583


>gi|331243368|ref|XP_003334327.1| hypothetical protein PGTG_16196 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313317|gb|EFP89908.1| hypothetical protein PGTG_16196 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 55

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             W+     Q  +R+      + G K+ V V++ I   TI+E +L     K  + D
Sbjct: 3   PHWNPTVEAQAFDRL-----HRIGQKKTVQVFHFITPKTIEEKILIVQNRKKQLTD 53


>gi|282900231|ref|ZP_06308184.1| Helicase-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194873|gb|EFA69817.1| Helicase-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 1019

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 19/175 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           +  N  A N   + ++  QLA   + + +      V + K+  L+ ++ +   +  ++  
Sbjct: 527 EDSNFIADNG--EILELTQLALELLSFSDANGQPGVENAKLDWLKGMLNRDPESKFLIFT 584

Query: 76  HFNSDLARLQKAFPQGR-------TLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLN 124
                   + KA P          +L +   T+         G    +    ++   G +
Sbjct: 585 ESLQTCEIIIKALPGYSGKLTGDMSLSQREDTVARLRGLGERGSNIRVLVATSAADEGFD 644

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            Q   N ++ + L  +     Q   R+      + G    V  YYLI  +T +E 
Sbjct: 645 FQT-ANRVIHWDLTPNPAVLMQRNGRVA-----RLGQISDVIAYYLIIADTHEEK 693


>gi|239827429|ref|YP_002950053.1| SNF2-related protein [Geobacillus sp. WCH70]
 gi|239807722|gb|ACS24787.1| SNF2-related protein [Geobacillus sp. WCH70]
          Length = 964

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT D     ++ + E K  ++ A   S   G+NLQ+  +++V + L W+ +  +Q I R 
Sbjct: 494 RTADMRAALVEHFRE-KAEIMIA-TESAAEGVNLQF-CSLVVNYDLPWNPQRIEQRIGRC 550

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K  V V   + Q N  D+ V + L  K  +   +L A
Sbjct: 551 -----HRYGQKHDVVVINFLNQRNEADQRVYELLEQKFNLFTGVLGA 592


>gi|309791645|ref|ZP_07686137.1| helicase [Oscillochloris trichoides DG6]
 gi|308226267|gb|EFO80003.1| helicase [Oscillochloris trichoides DG6]
          Length = 1041

 Score = 54.9 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 27/150 (18%)

Query: 51  VHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKD 97
             D K+ AL+ ++ +         ++V   F   L  L +             GR  D+D
Sbjct: 514 DADPKLNALDRLVSETLAGEGPGKLLVFSFFIHTLNYLLQRLRTAGVRVELITGRVADED 573

Query: 98  PCTIQEW------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +++       +   I +L +       GL+ ++  + LV + + W+    +Q I RI
Sbjct: 574 REHLRDRFRLPRSHSKAIDVLLSS-EVGCEGLDYEF-CDRLVNYDIPWNPMRIEQRIGRI 631

Query: 152 GVTRQRQAGFKRA-VFVYYLIAQNTIDELV 180
                 + G K   V ++  +  +T++E V
Sbjct: 632 D-----RFGQKSPKVKIFNFVTPDTVEERV 656


>gi|108762887|ref|YP_632846.1| helicase/SNF2 domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108466767|gb|ABF91952.1| helicase/SNF2 domain protein [Myxococcus xanthus DK 1622]
          Length = 907

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T +     ++E+       +     +   GLNLQ+  N++V + L W+ +  +Q I 
Sbjct: 474 DAGTPEDRRALVEEFRHRTQ--ILICTEAGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIG 530

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           R       + G +R V V   + + N  D  + + L  K  + D +  A
Sbjct: 531 RC-----HRYGQQRDVLVINFLNRMNAADARLFELLEKKLNLFDGVFGA 574


>gi|325117137|emb|CBZ52689.1| putative DNA excision repair protein [Neospora caninum Liverpool]
          Length = 1357

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 21/111 (18%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                G  +      +  +     I  L       G GLNL                    
Sbjct: 975  RLDGGVPVASRHAIVDRFQRDSSIFALLLTTRVGGVGLNLT------------------- 1015

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +R+   R  + G  + V +Y L+   +++E V  R   K  +   +L 
Sbjct: 1016 -AADRVARERSWRIGQSKDVCIYRLLTSGSMEEKVYHRQVFKFFLSQKVLQ 1065


>gi|161789119|ref|YP_001595675.1| SNF2 family protein [Vibrio sp. 0908]
 gi|161761405|gb|ABX77050.1| SNF2 family protein [Vibrio sp. 0908]
          Length = 2349

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +N G I ++  +      G+NLQ G + +   +L W     QQ   R      RQ   
Sbjct: 1701 DSYNAGDIKIVICN-KKAEVGVNLQKGTSAIHHLTLPWTPASIQQRNGR----GVRQGNT 1755

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               V +YY + + + D   L  L  K +    L N  + E +
Sbjct: 1756 ASKVSLYYYLGKGSFDGYRLDLLNKKKSWMRDLFNGTESEAV 1797


>gi|257879433|ref|ZP_05659086.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|323142564|ref|ZP_08077380.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
 gi|257813661|gb|EEV42419.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|322412997|gb|EFY03900.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
          Length = 2776

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 26/171 (15%)

Query: 30   VKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQK 86
             K  QL          +  +    D K K +      AN  P   +   H     A+ + 
Sbjct: 2354 DKLTQLVFCDLSTPKNDGTFNVYDDVKTKLI------ANGVPAEEVAFIHDADTEAKKKD 2407

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             F + RT             G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 2408 LFAKVRT-------------GQVRVLLGSTQKMGAGTNVQDKLVAVHHLDVGWRPSDMTQ 2454

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI     RQ    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 2455 RNGRII----RQGNRNKEVQVYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2501


>gi|309811323|ref|ZP_07705110.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308434630|gb|EFP58475.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
          Length = 842

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +D+    +  +  EG I +      +   G+NLQ+  ++L+ + L W+ +  +Q I R+ 
Sbjct: 496 VDRRKALVDYFRTEGTIMIA---TEAAAEGINLQF-CSMLINYDLPWNPQRVEQRIGRV- 550

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
                + G K  V V     +  I ++ +L+ L  K  +   +  A
Sbjct: 551 ----HRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGA 592


>gi|168698695|ref|ZP_02730972.1| putative helicase SNF2 family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 1047

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKI-PL-LFAHPASCGHGLNLQYGGNILVFFSLWW 139
            RL   +    + +++       +   I P+ L     +   GLNLQ     L+ + + W
Sbjct: 539 ERLMTMYGGMDSEEREEVKAAFQSAPDISPVRLLLATDAAAEGLNLQNHCYRLIHYEIPW 598

Query: 140 DLEEHQQMIERIGVTRQRQAGF-----KRAVFVYYLIAQN 174
           +    +Q   RI   R  Q GF     +R VFVY+ + Q 
Sbjct: 599 NPNRLEQRNGRI--DRHGQKGFLADSGERQVFVYHFVGQG 636


>gi|160944382|ref|ZP_02091610.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444164|gb|EDP21168.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2409

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T +K      +   G++ +L    A  G G N+Q     +    + W   +  Q   R
Sbjct: 2026 ADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQRNGR 2085

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 2086 II----RQGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 2128


>gi|328854882|gb|EGG04012.1| hypothetical protein MELLADRAFT_89725 [Melampsora larici-populina
           98AG31]
          Length = 145

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R  +      T ++         +  +        + G GLN+    + +      W+ +
Sbjct: 9   RFCQLHGNMSTFERTCQLNPFTKDPVVEAFVVLIEAGGVGLNMTC-ADEVYLMDAHWNPQ 67

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
             QQ ++ +        G  R V  ++++   +I++ + 
Sbjct: 68  VVQQAVDHL-----HHIGQTRPVRAFHVVTGQSIEQHLY 101


>gi|313897139|ref|ZP_07830684.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312958067|gb|EFR39690.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 461

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PCTIQ 102
           K+  DE+++  + I         ++   +N++ + L KA  +   +            + 
Sbjct: 280 KQSLDERVEMAKNI--ARTKENCLIWCDYNNESSALHKAIRESVEVKGSDTPEHKEKAMM 337

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G +  L   P+ CG G+N Q   + ++F  L    E+  Q I R       + G K
Sbjct: 338 GFASGDVKYLVTKPSICGFGMNWQN-CHDMIFCGLSDSYEQFYQAIRRC-----YRFGQK 391

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V V+ +I++   +  VL  ++ K T  + +
Sbjct: 392 HEVNVHVIISEK--EMNVLNNIKRKQTDHERM 421


>gi|257438349|ref|ZP_05614104.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199180|gb|EEU97464.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2422

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T +K      +   G++ +L    A  G G N+Q     +    + W   +  Q   R
Sbjct: 2033 ADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQRNGR 2092

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 2093 II----RQGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 2135


>gi|299748682|ref|XP_001839314.2| hypothetical protein CC1G_13355 [Coprinopsis cinerea okayama7#130]
 gi|298408087|gb|EAU82504.2| hypothetical protein CC1G_13355 [Coprinopsis cinerea okayama7#130]
          Length = 1191

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 39/161 (24%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP----------QGRT-LDKDPCTIQEWNEGKIPLLFAHP 116
              +I+   F   +A +Q  F           QGR    +    + ++N+     +    
Sbjct: 391 DKKVIIFQEFTYCMALVQNIFKLYGMNKPLIIQGRHSFKQRASIVDKFNKDPNHRVLIFS 450

Query: 117 ASCGHGLNLQYGGNILVFF----------------------SLWWDLEEHQQMIERIGVT 154
                GLNL    +I++F                          W  ++  Q+I R    
Sbjct: 451 KVGSTGLNLTR-ASIVIFLVRTSLHFLSNAAIHPLNPNPPKDQPWSAQDEWQIIGRAYRQ 509

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R       + V V  L+A NT D  +    R K  + D   
Sbjct: 510 R-----QSKPVTVIQLLAANTADITLSLLARGKKDMLDAFF 545


>gi|240169377|ref|ZP_04748036.1| helicase domain-containing protein [Mycobacterium kansasii ATCC
           12478]
          Length = 955

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 24/155 (15%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------------- 94
            D K+K L  ++++  A     IV   F      L +      T                
Sbjct: 467 SDAKLKRLVPLVKELIAEGYHPIVFCRFIPTADYLAEHLRTALTRIPDLQIDAVTGNLAP 526

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++    +        P L         G+NLQ G   +V + L W+   H+Q   RI   
Sbjct: 527 EEREERVDALTAHDGPRLLIATDCLSEGINLQEGFTAVVHYDLAWNPTRHEQREGRID-- 584

Query: 155 RQRQAGFKRAV--FVYYLIAQNTIDELVLQRLRTK 187
              + G    V   V Y    N ID +VL+ L  +
Sbjct: 585 ---RFGQGAPVVRTVTYFGEDNGIDGIVLEVLIRR 616


>gi|119357747|ref|YP_912391.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355096|gb|ABL65967.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 967

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I +W   +  ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R       
Sbjct: 493 RQAIVDWFRNEATIMIA-TEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC-----H 545

Query: 158 QAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           + G K  V V   + + N  D+ V Q L  K  +   +  A
Sbjct: 546 RYGQKFDVVVINFLNKANAADQRVYQLLDQKFKLFSGVFGA 586


>gi|218297348|ref|ZP_03497964.1| DEAD-like helicase [Thermus aquaticus Y51MC23]
 gi|218242337|gb|EED08881.1| DEAD-like helicase [Thermus aquaticus Y51MC23]
          Length = 680

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +  L  I+E  +  PI++         R  +A+ + +                  +L  H
Sbjct: 465 LSRLASILEAEDFRPIVLRADTVRPEER--EAWLKAQVEKGG------------DVLLCH 510

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           P     GL+L    + L+F+   + +   +Q   R       + G K  V V Y+  + T
Sbjct: 511 PRVVQTGLDLVE-FSTLIFYQPEYSVYTLRQAARRSW-----RIGQKEPVRVVYMAYRGT 564

Query: 176 IDELVLQRLRTKSTIQDLL 194
           + E  L  +  K+     L
Sbjct: 565 LQEAALVLIAQKARSSLAL 583


>gi|320104893|ref|YP_004180484.1| helicase domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319752175|gb|ADV63935.1| helicase domain protein [Isosphaera pallida ATCC 43644]
          Length = 1166

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 32/215 (14%)

Query: 14  DLQGENIEAFNSAS----------KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            L+   ++   +A              K  Q A   V   +++ W E+        ++  
Sbjct: 435 SLEENLVDQATAAKTITELEAEIDILTKLEQQARAVVTSGQDRKWDELSKLLQNNPQMHD 494

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEGKIP 110
           E      II+       L  L                   G   D        +      
Sbjct: 495 ESGRQRKIIIFSEHRDTLNYLHAKIAGVLGNANAIVTIHGGINRDDRLRIQALFRSDPEV 554

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +     + G G+NLQ   +++V + L W+    +Q   RI      + G      ++ L
Sbjct: 555 RVLVATDAAGEGVNLQC-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWSL 608

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +A+ T +  V  RL  K   +     ALK +  ++
Sbjct: 609 VAKETREGAVWYRLLEKIATE---CEALKGKVFNI 640


>gi|258646416|ref|ZP_05733885.1| conserved hypothetical protein [Dialister invisus DSM 15470]
 gi|260403819|gb|EEW97366.1| conserved hypothetical protein [Dialister invisus DSM 15470]
          Length = 482

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +L R+     + +  DK    I     ++ G +  L   P+  G G+N Q   N ++F  
Sbjct: 330 ELHRVCNLSQEVKGADKATHKINAMTGFSVGLLKCLITKPSIAGFGMNWQNCRN-VIFVG 388

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLL 194
           L    E+  Q + R       + G K+AV VY +I+  +  + E + ++      ++D +
Sbjct: 389 LSDSYEQFYQAVRRCW-----RFGQKKAVDVYIIISAKEGCVKENIERKEADSRKMRDAM 443

Query: 195 L----NALKKE 201
           +     A+K+E
Sbjct: 444 ITLTKQAVKEE 454


>gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
 gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
          Length = 1588

 Score = 54.9 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK-IP 110
            I      A ++V   +N  L  L+ AF            G     +     +    K I 
Sbjct: 1394 IKSSDPEAKVLVFSSWNDVLDVLEHAFNANGITYIRMKGGSNTIGNHRVHSQKESPKPIQ 1453

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L        +GLNL    + +V      +     Q I R+      + G +    V+  
Sbjct: 1454 VLMLLVQHGANGLNLLEAQH-VVLVEPLLNPAAETQAISRV-----HRIGQENRTLVHRF 1507

Query: 171  IAQNTIDELVLQRLRTKSTIQ 191
            + +NT++E + +  R+++T  
Sbjct: 1508 MVKNTVEESIYKLNRSRNTSS 1528


>gi|160942833|ref|ZP_02090073.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
            M21/2]
 gi|158445885|gb|EDP22888.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1925

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T +K      +   G++ +L    A  G G N+Q     +    + W   +  Q   R
Sbjct: 1536 ADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQRNGR 1595

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 1596 II----RQGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 1638


>gi|256079746|ref|XP_002576146.1| snf2 histone linker phd ring helicase [Schistosoma mansoni]
 gi|238661407|emb|CAZ32381.1| snf2 histone linker phd ring helicase, putative [Schistosoma mansoni]
          Length = 1587

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 21/146 (14%)

Query: 47   HWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
            +    H  K++A    L+VI  +   A  IV   + S L  L  A  Q            
Sbjct: 1367 NIVGDHSTKVRAVIQRLKVIKREDPDAKAIVFSSWLSVLVTLAGALDQNGLAYTTLFHAR 1426

Query: 98   ----PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                P  +  +        +L        +GLNL    N ++F           Q + RI
Sbjct: 1427 DACCPGRLAGFQCFGSTTWILLMPVQLGANGLNLT-SANHVLFVDPVLSHAREAQAVARI 1485

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTID 177
                  + G  R   V+  + +++I+
Sbjct: 1486 -----HRIGQTRPGVVHRFLVKDSIE 1506


>gi|310831496|ref|YP_003970139.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386680|gb|ADO67540.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 737

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGR 92
           AN   Y +    ++     KI  +  I+ + +    I+   F     +L  +        
Sbjct: 591 ANDFKYVNGADMFQ--TSSKISQIIKILNETDEK-FIIYTQFPEIVHNLVEILNKLNIKT 647

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T+ K    +         ++ A   +   G++L Y  N+++ F  +     + +  E+  
Sbjct: 648 TVLKKGSLVDF--SVDTRVVVASSTTESSGIDLTYFNNMII-FEPYVHNYLYMKSYEKQI 704

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           + R  + G  +   V+ LI+ +TI+  +  
Sbjct: 705 IGRINRIGQTKHCNVHRLISTDTIESDIYA 734


>gi|307249912|ref|ZP_07531886.1| hypothetical protein appser4_7100 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858101|gb|EFM90183.1| hypothetical protein appser4_7100 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 955

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 492 EVDKRSALIEHFKE-KAQIMIA-TEAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC- 547

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 548 ----HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 589


>gi|331231674|ref|XP_003328500.1| homeotic regulator [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307490|gb|EFP84081.1| homeotic regulator [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 53

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             W+     Q ++R+      + G  + V+V++ +  NTI+E ++     K  +  
Sbjct: 3   PHWNPTVEAQAVDRL-----HRIGQTKKVWVFHFVTPNTIEEKIIHVQNKKKQLAQ 53


>gi|255719067|ref|XP_002555814.1| KLTH0G18150p [Lachancea thermotolerans]
 gi|238937198|emb|CAR25377.1| KLTH0G18150p [Lachancea thermotolerans]
          Length = 1554

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 64   EKANAAP--IIVAYHFNSDLARLQKAFPQGRTL-------DKDPCTIQEWN-EGKIPLLF 113
            E ++  P  II+   ++  L  L K   Q   L        K    ++++     +  L 
Sbjct: 1357 ESSSDPPPQIIIYSQYSEFLNLLSKVLKQHSVLHCNTAGAGKFSKMVEKFKKNPDVTCLL 1416

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
             +      GL L    ++ +      +  + QQ I R       + G  R   V+  + +
Sbjct: 1417 LNVTRQATGLTLVNATHVFIM-DPIMNTSDEQQAINR-----THRIGQTRETHVWNFVVR 1470

Query: 174  NTIDELVLQR 183
            NT+++ +++ 
Sbjct: 1471 NTVEQNIVRL 1480


>gi|123467717|ref|XP_001317270.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900000|gb|EAY05047.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 904

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTI-QEWN- 105
           +    I+   N   I+   H    L  + +             G T  K+   +  ++  
Sbjct: 753 QKFRDILFCQNRK-ILFFAHHTVMLKGISEWLTFRNIDHILINGETSMKNRKILLDKFKS 811

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E +  +      +   G+ L    +++VF  L      +          R  + G  + V
Sbjct: 812 EPECKIAVLGIETISAGVTLVE-ASVVVFAEL-----MYVPATHLQAEDRVHRIGQTQPV 865

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +YYL A  ++D+ V + L  K  +   ++ +
Sbjct: 866 DIYYLHAPGSVDDRVWEILERKLEVLGSVITS 897


>gi|9633897|ref|NP_051975.1| gp086L [Rabbit fibroma virus]
 gi|11134120|sp|Q9Q8Z2|NTP1_RFVKA RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|6578616|gb|AAF17970.1|AF170722_88 gp086L [Rabbit fibroma virus]
          Length = 632

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 19/201 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVA 74
           +G+++   +SA       +L   +  + +          K    E  + ++     ++  
Sbjct: 342 KGQSLNGTSSADDISFLNELREHSCKFTDVCLRILASPGKCLVFEPFVNQSGINILLLYF 401

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGG 129
             FN     +       RT +    ++ E+N      G +        S G G++     
Sbjct: 402 SAFN-----ISYIEFSSRTKNTRVQSVAEFNKRENTNGDLIKTCVFSLSGGEGISFFSIN 456

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQ 182
           +I +   + W+    +Q+I R             +R V+V+++IA+      T+DE +L 
Sbjct: 457 DIFIL-DMTWNEASLRQIIGRAIRLNSHVLTPEHRRYVYVHFIIARLSNGDPTVDEDLLD 515

Query: 183 RLRTKSTIQDLLLNALKKETI 203
            +R KS     L    K  +I
Sbjct: 516 IIRNKSKEFTQLFKVFKHTSI 536


>gi|115522588|ref|YP_779499.1| SNF2-related protein [Rhodopseudomonas palustris BisA53]
 gi|115516535|gb|ABJ04519.1| SNF2-related protein [Rhodopseudomonas palustris BisA53]
          Length = 963

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           A    ++ D     +  +   +  +L A   S   G+NLQ+  ++L+ F L W+ +  +Q
Sbjct: 489 AVSGSKSADMKTAIVNAFKSDEKTILIA-TESGAEGINLQF-CSLLINFDLPWNPQRVEQ 546

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G K  V V  ++  +N  ++ + + L+ K  + + L  A
Sbjct: 547 RIGRC-----HRYGQKIDVTVVNMLNRKNQAEKRIYELLKNKFNLFEGLFGA 593


>gi|190150014|ref|YP_001968539.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189915145|gb|ACE61397.1| hypothetical ATP-dependent helicase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 957

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +    N  P  VA  +   LAR Q  +       +DK    I+ + E K  ++ A   + 
Sbjct: 461 LFSGTNNDPNSVAI-YQDWLARYQGTEKITGSAEVDKRSALIEHFKE-KAQIMIA-TEAA 517

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDE 178
             G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + + N  D+
Sbjct: 518 SEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLNKRNLADQ 571

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            VL+ L  K  +   +L A
Sbjct: 572 RVLELLTEKFKLFQGVLGA 590


>gi|153003482|ref|YP_001377807.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027055|gb|ABS24823.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 905

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 26/191 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAP 70
             L     + ++ +++ ++  ++  GA      +       EK  AL  +  +       
Sbjct: 350 LTLLAHLADRYSLSARLIRNRRVKVGAFTSRVLRRKDVGEGEKRAALVELCARLAKGGEK 409

Query: 71  IIVAYHFNSDLARLQKA-------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++V   F  DL  L++              +    +L+     +  + + + P++     
Sbjct: 410 VLV---FGHDLELLRELQAGIGGEGLEALLYDDAPSLEGRDRLVARFRDPEGPMVLLSGE 466

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G N Q+    LV   L       +Q I R+      + G  R V ++ ++     +
Sbjct: 467 SGGEGRNFQF-ACQLVCADLPESPLVLEQRIGRLD-----RLGQHRPVEIHLVVEPG--E 518

Query: 178 ELVLQRLRTKS 188
           E  L  L  K 
Sbjct: 519 EAFLADLYEKE 529


>gi|53729198|ref|ZP_00348337.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208183|ref|YP_001053408.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae L20]
 gi|126096975|gb|ABN73803.1| hypothetical ATP-dependent helicase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 956

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 492 EVDKRSALIEHFKE-KAQIMIA-TEAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC- 547

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 548 ----HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 589


>gi|313115905|ref|ZP_07801333.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621773|gb|EFQ05300.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1922

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T +K      +   G++ +L    A  G G N+Q     +    + W   +  Q   R
Sbjct: 1535 ADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQRNGR 1594

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 1595 II----RQGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 1637


>gi|307263345|ref|ZP_07544963.1| hypothetical protein appser13_7640 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306871407|gb|EFN03133.1| hypothetical protein appser13_7640 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +    N  P  VA  +   LAR Q  +       +D+    I+ + E K  ++ A   + 
Sbjct: 461 LFSGTNNDPNSVAI-YQDWLARYQGTEKITGSAEVDRRSALIEHFKE-KAQIMIA-TEAA 517

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDE 178
             G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + + N  D+
Sbjct: 518 SEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLNKRNLADQ 571

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            VL+ L  K  +   +L A
Sbjct: 572 RVLELLTEKFKLFQGVLGA 590


>gi|297733908|emb|CBI15155.3| unnamed protein product [Vitis vinifera]
          Length = 1201

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+    +   +  ++ +      + G GL+     N +VF  L        Q  +R   
Sbjct: 574 RDRQSAVLSFRSSTEVKIAIIGITAGGFGLDFSSAQN-VVFLELPQSPSIMLQAEDR--- 629

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDE 178
               + G   AV +Y   A++T+DE
Sbjct: 630 --AHRRGQTNAVNIYIFCAKDTMDE 652


>gi|225457289|ref|XP_002281382.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1252

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+    +   +  ++ +      + G GL+     N +VF  L        Q  +R   
Sbjct: 572 RDRQSAVLSFRSSTEVKIAIIGITAGGFGLDFSSAQN-VVFLELPQSPSIMLQAEDR--- 627

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDE 178
               + G   AV +Y   A++T+DE
Sbjct: 628 --AHRRGQTNAVNIYIFCAKDTMDE 650


>gi|154315087|ref|XP_001556867.1| hypothetical protein BC1G_04885 [Botryotinia fuckeliana B05.10]
 gi|150848423|gb|EDN23616.1| hypothetical protein BC1G_04885 [Botryotinia fuckeliana B05.10]
          Length = 424

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 47/163 (28%), Gaps = 20/163 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPI---IVAYHFNSDLARL-----------QKA 87
            D  K       +     ++++E      +   I+   + + +  +              
Sbjct: 162 VDAGKSALPQSTKLASIRKLLLEWRKGTRLDKTIIFVQWKAMILLIGMMLEEDNFHFVYY 221

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  ++        N  ++ ++       G GLN+    N  +   LWW+     Q 
Sbjct: 222 TGDMSKRNRANALDSFENMKEVTVMIMGLKVGGVGLNITC-ANRAIMVDLWWNQAIEMQA 280

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             RI      + G  +       + + + D  +      K+ +
Sbjct: 281 NARI-----YRIGQPKETHFRREVVRRSADIRLALTQLKKNAL 318


>gi|303250388|ref|ZP_07336586.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252258|ref|ZP_07534155.1| hypothetical protein appser6_7760 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650714|gb|EFL80872.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860180|gb|EFM92196.1| hypothetical protein appser6_7760 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK--AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +    N  P  VA  +   LAR Q          +DK    I+ + E K  ++ A   + 
Sbjct: 461 LFSGTNNDPNSVAI-YQDWLARYQGTAKITGSAEVDKRSALIEHFKE-KAQIMIA-TEAA 517

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDE 178
             G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + + N  D+
Sbjct: 518 SEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLNKRNVADQ 571

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            VL+ L  K  +   +L A
Sbjct: 572 RVLELLTEKFKLFQGVLGA 590


>gi|303252378|ref|ZP_07338544.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247677|ref|ZP_07529718.1| hypothetical protein appser2_6710 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648837|gb|EFL79027.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855845|gb|EFM88007.1| hypothetical protein appser2_6710 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 493 EVDKRSALIEHFKE-KAQIMIA-TEAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC- 548

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 ----HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 590


>gi|307245561|ref|ZP_07527648.1| hypothetical protein appser1_7650 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254516|ref|ZP_07536352.1| hypothetical protein appser9_7640 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258973|ref|ZP_07540704.1| hypothetical protein appser11_7700 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853620|gb|EFM85838.1| hypothetical protein appser1_7650 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862566|gb|EFM94524.1| hypothetical protein appser9_7640 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866997|gb|EFM98854.1| hypothetical protein appser11_7700 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK--AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +    N  P  VA  +   LAR Q          +DK    I+ + E K  ++ A   + 
Sbjct: 461 LFSGTNNDPNSVAI-YQDWLARYQGTAKITGSAEVDKRSALIEHFKE-KAQIMIA-TEAA 517

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDE 178
             G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + + N  D+
Sbjct: 518 SEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLNKRNVADQ 571

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            VL+ L  K  +   +L A
Sbjct: 572 RVLELLTEKFKLFQGVLGA 590


>gi|75907548|ref|YP_321844.1| SNF2-like helicase [Anabaena variabilis ATCC 29413]
 gi|75701273|gb|ABA20949.1| SNF2-related Helicase [Anabaena variabilis ATCC 29413]
          Length = 1082

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 39/193 (20%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ-- 90
           AN A Y  + +  K V   K      + +         +I+   +      LQ+   +  
Sbjct: 481 ANQARYQADPRVEKLVAWIKQNLCPDLGKPNAAWLEKRVIIFTEYTDTKRYLQQKLQEAI 540

Query: 91  -GRTLDKDPCTIQEWNEGKIPLL---------------------------FAHPASCGHG 122
            G   ++D   ++  N  +I +                                 +   G
Sbjct: 541 AGSDKERDSEALRR-NAERIDVFHGGIGEERREAIKNAFNADPLRHPLRILIATDAAREG 599

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ     L  F + W+    +Q   RI    QR       V  YY +     ++ VL+
Sbjct: 600 VNLQNNCADLFHFDVPWNPSRMEQRNGRIDRKLQR----SPIVHCYYFVLAQRTEDKVLK 655

Query: 183 RLRTK-STIQDLL 194
            L  K  TIQ  L
Sbjct: 656 VLVKKTETIQKEL 668


>gi|171691588|ref|XP_001910719.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945742|emb|CAP71855.1| unnamed protein product [Podospora anserina S mat+]
          Length = 381

 Score = 54.6 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +     IP+L     S   GL +    N++      ++     Q + R+   
Sbjct: 297 DRTAIIDNFSTNPDIPVLLLTINSGAVGLTIT-AANVVHLVEPIYNPAIEAQAVARVL-- 353

Query: 155 RQRQAGFKRAVFVYYLIAQNTID 177
              + G  R V +   + + TI+
Sbjct: 354 ---RMGQTRPVKILRYVTEETIE 373


>gi|325120317|emb|CBZ55871.1| putative helicase conserved C-terminal domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2877

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++         + +  +L        HGL+L    ++L       D    QQ+I R   
Sbjct: 2588 RNRVDALKSFQQDTETMVLLLSTQLGAHGLDLSCASHVL-LPDPPTDPNVEQQVISR--- 2643

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                + G  R V V   I ++T++E +LQ  
Sbjct: 2644 --AHRMGALRDVHVEIFILKDTVEETILQLR 2672


>gi|321465194|gb|EFX76197.1| hypothetical protein DAPPUDRAFT_249322 [Daphnia pulex]
          Length = 292

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + ++ +L     + G GLNL    N L      W+ +   Q  +RI      + G K+ 
Sbjct: 130 QKKEVHVLLVSLLAGGTGLNLIGPANHLFLSDQNWNPQVEAQAGDRI-----YRVGQKKE 184

Query: 165 VFVY--YLIAQNT 175
           V V    L+A  T
Sbjct: 185 VHVLLVSLLAGGT 197



 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + ++ +L     + G GLNL    N L      W+ +   Q  +RI      + G K+ 
Sbjct: 181 QKKEVHVLLVSLLAGGTGLNLIGPANHLFLSDQNWNPQVEAQAGDRI-----YRVGQKKE 235

Query: 165 VFV 167
           V V
Sbjct: 236 VHV 238



 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI----PLLFAHPASCGHGLNLQYGGNI 131
             + D   L+        L      IQ+ N   I     +L     + G GLNL    N 
Sbjct: 46  WIDDDGECLKLLVETVVLLRMKDDKIQDTNLPLITMPKKVLLVSLLAGGTGLNLIGPANH 105

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY--YLIAQNT 175
           L      W+ +   Q  +RI      + G K+ V V    L+A  T
Sbjct: 106 LFLSDQNWNPQVEAQAGDRI-----YRVGQKKEVHVLLVSLLAGGT 146


>gi|76153117|gb|AAX24778.2| SJCHGC03308 protein [Schistosoma japonicum]
          Length = 213

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G  + V VY LI +NT++  +L+R   K  +Q +++ + + 
Sbjct: 1   RLGQTKPVTVYRLICKNTVEGRMLRRAEEKRAMQQMVIQSGQA 43


>gi|330947467|gb|EGH48088.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 133

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 55  KIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
           K++ L  ++ + +    +I+   +   +A L++   +               K    I  
Sbjct: 7   KVRILADLMAELDVDDKVILFCEYQESVATLREHCLKIGIGCVTLVGSDSPKKRQKAIDA 66

Query: 104 WNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +     +     ++ G G NL    N + F  L W      Q  +R       + G  
Sbjct: 67  FQQDQDCRIFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR-----AYRNGQL 120

Query: 163 RAVFVYYLIAQNT 175
           R V V   +A +T
Sbjct: 121 RMVVVKIPLADDT 133


>gi|311899146|dbj|BAJ31554.1| hypothetical protein KSE_57820 [Kitasatospora setae KM-6054]
          Length = 613

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 11/148 (7%)

Query: 57  KALEVII-EKANAAPIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGK 108
           + LE++    A     +V   F   L  LQ+           G T D+     +   +  
Sbjct: 430 ETLEIVAANAALGRKTLVWTTFVRSLTTLQEMLAPYRPAVVHGGTADRAEELRRFREDPD 489

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L ++PA+ G G++L    +  V+    +      Q ++RI        G +  V + 
Sbjct: 490 CLVLLSNPATLGEGISLHQVCHDAVYVDRDFMAGRFLQSLDRIHRLGL-APGTETRVTI- 547

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L A  TIDE+V  RL+ K      +L+
Sbjct: 548 -LAATGTIDEVVALRLQQKLDFMGRILD 574


>gi|146281859|ref|YP_001172012.1| helicase, putative [Pseudomonas stutzeri A1501]
 gi|145570064|gb|ABP79170.1| helicase, putative [Pseudomonas stutzeri A1501]
 gi|327480090|gb|AEA83400.1| helicase, putative [Pseudomonas stutzeri DSM 4166]
          Length = 1012

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 75/197 (38%), Gaps = 40/197 (20%)

Query: 40   VYYDEEKHWKEVHDE--KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------ 89
            +Y  +  H +++  E  K+  +  ++++       +I+       L R+ K +       
Sbjct: 820  LYSRDGHHARQLMSESGKLAVMLKLLDEIRDKGEKVILFMMTKR-LQRVLKLWLDQIYGL 878

Query: 90   --------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                          +   + +         +    +L   P + G GL +  G N +V  
Sbjct: 879  DIAVINGDTKAVATKAEEMTRKKLISAFEAKSGFNVLVMSPVAAGVGLTV-VGANHVVHL 937

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTI 190
               W+  +  Q  +R+      + G ++ VF+ +L A      ++ D  + + LR K  +
Sbjct: 938  ERHWNPAKEAQASDRV-----YRIGQQKEVFI-HLPAVTHPQFDSFDVHLDRLLRGKLML 991

Query: 191  QDLLL--NAL-KKETIH 204
            +D ++   A+ + E IH
Sbjct: 992  KDAVVTPEAVSESEMIH 1008


>gi|325982151|ref|YP_004294553.1| SNF2-like protein [Nitrosomonas sp. AL212]
 gi|325531670|gb|ADZ26391.1| SNF2-related protein [Nitrosomonas sp. AL212]
          Length = 951

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNI 131
           V Y+   +  +        RT D     +  +  EG+I +      +   G+NLQ+  ++
Sbjct: 463 VIYNQWLERHQGTDRLSGSRTADMRSALVDYFREEGRIMIA---TEAGAEGINLQF-CSL 518

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTI 190
           +V + L W+ +  +Q I R       + G K  V V   +  +N  D+ V + L  K  +
Sbjct: 519 VVNYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFLNRKNAADKRVFELLAEKFKL 573

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 574 FEGVFGA 580


>gi|76157733|gb|AAX28568.2| SJCHGC04949 protein [Schistosoma japonicum]
          Length = 193

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L        +GLNL    N ++F           Q + RI      + G  R   ++  
Sbjct: 52  ILLMPVQLGANGLNLT-SANHVLFIDPVLSHAREAQAVARI-----HRIGQTRPGIIHRF 105

Query: 171 IAQNTIDELVLQRLRTKSTIQ 191
           + +++I+  +       + + 
Sbjct: 106 LVKDSIEAALHASQSRNTDLS 126


>gi|134299055|ref|YP_001112551.1| helicase domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051755|gb|ABO49726.1| helicase domain protein [Desulfotomaculum reducens MI-1]
          Length = 456

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PCTIQEWNEGKIPLL 112
              +I + +    ++    N +   L KA      +            + ++  G I  L
Sbjct: 279 CAELINQTDDT-WLIWCDLNDESDALTKAIEGAVEVRGSHKPAYKEKAMLDFAAGDIKRL 337

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            +  + CG G+N Q   N + F  L    E+  Q I R       + G  + V VY +I 
Sbjct: 338 VSKSSICGFGMNFQV-CNRMAFVGLSDSFEQIFQAIRRCW-----RFGQTKPVDVY-IIT 390

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             T +  VL+ ++ K      +++ + + T  +
Sbjct: 391 AET-EGAVLENIKRKEQDFKNMVDEMVRYTQGI 422


>gi|307256725|ref|ZP_07538504.1| hypothetical protein appser10_7280 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864773|gb|EFM96677.1| hypothetical protein appser10_7280 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +    N  P  VA  +   LAR Q  +       +DK    I+ + E K  ++ A   + 
Sbjct: 461 LFSGTNNDPNSVAI-YQDWLARYQGTEKITGSAEVDKRSALIEHFKE-KAQIMIA-TEAA 517

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDE 178
             G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + + N  D+
Sbjct: 518 SEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLNKRNLADQ 571

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            VL+ L  K  +   +L A
Sbjct: 572 RVLELLTEKFKLFQGVLGA 590


>gi|295835438|ref|ZP_06822371.1| helicase [Streptomyces sp. SPB74]
 gi|295825492|gb|EDY43404.2| helicase [Streptomyces sp. SPB74]
          Length = 1741

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T +K     Q  N G I +L       G G N Q     L+     W      Q   RI 
Sbjct: 222 TPEKKAAMSQAANHGGIAVLMGSTEVLGTGFNGQNRAYALMHLDQDWTPASMIQRNGRIV 281

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               R       V VY+L  + ++D   +  L +K+ 
Sbjct: 282 ----RPGNQHEEVNVYFLATKGSMDAWQVGLLTSKAE 314


>gi|323448154|gb|EGB04056.1| hypothetical protein AURANDRAFT_33115 [Aureococcus anophagefferens]
          Length = 114

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G N L+     W+     Q + RI      + G  R   V  ++   +I+EL+L R   K
Sbjct: 42  GANHLIELGPSWNPVTDVQALGRIQ-----RFGQTRPCHVVRVVICGSIEELILLRQADK 96

Query: 188 STIQDLLLNALK 199
           S + + L+N  K
Sbjct: 97  SGLVE-LVNGGK 107


>gi|319744479|gb|EFV96836.1| SNF2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1998

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 1905 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 1964

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            R+     RQ    + V +Y+ I + + D
Sbjct: 1965 RLI----RQGNMHQEVDIYHYITKGSFD 1988


>gi|254422766|ref|ZP_05036484.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196190255|gb|EDX85219.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1051

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 50  EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------DK 96
           E  D K   L+  ++      +A   ++  +F   L  L +                 D+
Sbjct: 524 EAQDSKYNKLKDFLDSELAKDSAQKFVIFAYFRGTLKYLARRLNAAGISTGLIMGDMGDR 583

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +Q++ + + P +         G++LQ+    LV + L W+    +Q I R+    Q
Sbjct: 584 KWEVVQQFRQPEGPSVLLSSEVGSEGIDLQH-CRFLVNYDLPWNPMRVEQRIGRLDRLNQ 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +       + +     ++T++  +L+RL
Sbjct: 643 KA----ERISIVNFSLKDTVEAEILERL 666


>gi|160932541|ref|ZP_02079931.1| hypothetical protein CLOLEP_01379 [Clostridium leptum DSM 753]
 gi|156868500|gb|EDO61872.1| hypothetical protein CLOLEP_01379 [Clostridium leptum DSM 753]
          Length = 412

 Score = 54.6 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK---IP---- 110
           AL  + EK     +IV Y+F+ +L  L+  +        +   I EWN  K   IP    
Sbjct: 271 ALMELFEKH--PKMIVFYNFDYELDILKNLY------YGENVEIAEWNGHKHQPIPTCDS 322

Query: 111 -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +   G N     + +VF+S  +  +  +Q   R            + ++ Y+
Sbjct: 323 WVYLVQYTAGAEGWNC-ISTDTIVFYSQNYSYKIMKQSAGRTDRLNT----PFKDLYYYH 377

Query: 170 LIAQNTIDELVLQRLRTKST 189
           L +++ ID  + + L  K  
Sbjct: 378 LKSRSGIDLAISRALSEKRN 397


>gi|148238375|ref|YP_001223762.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147846914|emb|CAK22465.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH
           7803]
          Length = 502

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDL----ARLQKAFPQGRTLDKDPCT-IQEWNEG 107
           K+ A E ++++  A    +++   F + L     RL  A   GR   ++  T + ++  G
Sbjct: 339 KLPAAERLVQQLRAQGESVVLFSSFVAPLVLLQQRLGGALLTGRQKPEERQTAVDQFQAG 398

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL A   + G G  L +    +V     W   +  Q  +R       + G    +  
Sbjct: 399 STDLLLATYGAGGLGFTL-HRARQVVLLERPWTPGDVDQAEDRC-----HRLGMDGELVS 452

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++L      D+LV   + +K++  +LL+
Sbjct: 453 HWLQL-GPADQLVDGLVASKASRIELLM 479


>gi|293392002|ref|ZP_06636336.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952536|gb|EFE02655.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 958

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T D     ++ + E     +     +   G+NLQ+  ++++ + L W+ +  +Q I R 
Sbjct: 489 KTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSLIINYDLPWNPQRVEQRIGRC 545

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K  V V   + + N  D+ V + L  K  + + +  A
Sbjct: 546 -----HRYGQKHDVVVVNFVDETNEADQRVYELLEQKFQLFNGVFGA 587


>gi|171060838|ref|YP_001793187.1| helicase domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778283|gb|ACB36422.1| helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 947

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT D     ++ + +     +     +   G+NLQ+  ++++ + L W+ +  +Q
Sbjct: 474 RITGSRTADTRAALVEHFRDSAQ--IMIATEAGAEGINLQF-CSLVINYDLPWNPQRIEQ 530

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G +  V V   I   N  D+ V + L  K  + + +  A
Sbjct: 531 RIGRC-----HRYGQQHDVVVVNFIDLSNPADQRVYELLAQKFQLFEGVFGA 577


>gi|300114480|ref|YP_003761055.1| SNF2-like protein [Nitrosococcus watsonii C-113]
 gi|299540417|gb|ADJ28734.1| SNF2-related protein [Nitrosococcus watsonii C-113]
          Length = 1145

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  +          I+ + E     ++   P + G GL +  G N ++     W+  + 
Sbjct: 868 KAVAKRAASPTRQSMIRAFEERDGFNVIIMSPIAAGVGLTV-VGANNVIHLERHWNPAKE 926

Query: 145 QQMIERIGVTRQRQAGFKRAV-----FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Q  +R+      + G KR V      +++   Q + D  + Q L  K  ++D ++  ++
Sbjct: 927 AQATDRV-----YRIGQKRKVNVFIPLIHHPEYQ-SFDVNLHQLLSRKGQLKDAVVTPVQ 980


>gi|330948217|gb|EGH48477.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 98

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            K    I  +  +    +     ++ G G NL    N + F  L W      Q  +R   
Sbjct: 23  KKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLT-AANYVFFLGLPWTPGLQDQAEDR--- 78

Query: 154 TRQRQAGFKRAVFVYYLIAQNT 175
               + G  R V V   +A++T
Sbjct: 79  --AYRNGQLRMVVVKIPLAEDT 98


>gi|304311832|ref|YP_003811430.1| hypothetical protein HDN1F_22020 [gamma proteobacterium HdN1]
 gi|301797565|emb|CBL45785.1| Hypothetical protein HDN1F_22020 [gamma proteobacterium HdN1]
          Length = 912

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G         I  +N    P L    +  G G++L      ++   L W+    +Q   R
Sbjct: 761 GTERHVRERLIALFNTPFAPELLVASSVMGEGIDLHQECRFVIHHDLDWNPSVLEQRTGR 820

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +           R + VY      T DE + + ++ ++   D+++
Sbjct: 821 LDRIGALADRLGRNIEVYEPYLAGTHDEKMYKVVKDRAQWFDIVM 865


>gi|85119219|ref|XP_965595.1| hypothetical protein NCU02913 [Neurospora crassa OR74A]
 gi|28927406|gb|EAA36359.1| predicted protein [Neurospora crassa OR74A]
          Length = 846

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L L    +        W+     Q + RI      + G  R V       +++ +E V++
Sbjct: 747 LTLTV-ASYAFLMEPHWNPTLEDQALARI-----HRMGQTREVTTARFFIRDSFEERVME 800

Query: 183 RLRTKSTIQDLLL 195
               K  +  +LL
Sbjct: 801 VQEKKRKLVTVLL 813


>gi|254516162|ref|ZP_05128222.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR5-3]
 gi|219675884|gb|EED32250.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR5-3]
          Length = 961

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +DK    I  + +     +     +   G+NLQ+  ++++ + L W+ +  +Q I R   
Sbjct: 492 VDKRTALIDRFRDDAE--VLIATEAAAEGVNLQF-CSLVINYDLPWNPQRVEQRIGRC-- 546

Query: 154 TRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
               + G +  V V   + + N  D  VL+ L  K  + D L  A
Sbjct: 547 ---HRYGQRFDVVVINFLNKRNDADRRVLELLSEKFHLFDGLFGA 588


>gi|308271075|emb|CBX27685.1| hypothetical protein N47_H25070 [uncultured Desulfobacterium sp.]
          Length = 980

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R +D     I+ +   +  +L A   +   G+NLQ+  ++++ + L W+ +  +Q I R 
Sbjct: 503 RAVDVRTSLIEHF-RDEGSILLA-TEAAAEGINLQF-CSLVINYDLPWNPQRIEQRIGRC 559

Query: 152 GVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G +  V V   +  +N +D  VL+ L  K ++   +  A
Sbjct: 560 -----HRYGQRHDVVVINFLNERNEVDRRVLELLGEKFSLFSGVFGA 601


>gi|115442277|ref|NP_001045418.1| Os01g0952200 [Oryza sativa Japonica Group]
 gi|57899941|dbj|BAD87853.1| putative rad8 [Oryza sativa Japonica Group]
 gi|113534949|dbj|BAF07332.1| Os01g0952200 [Oryza sativa Japonica Group]
 gi|218189747|gb|EEC72174.1| hypothetical protein OsI_05224 [Oryza sativa Indica Group]
 gi|222619881|gb|EEE56013.1| hypothetical protein OsJ_04781 [Oryza sativa Japonica Group]
          Length = 1298

 Score = 54.6 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 16/127 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASC 119
             +I+   F   +  +++    G            L     ++ ++ +    +      + 
Sbjct: 1128 KVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTA 1187

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GL+L +  + +      WD    +Q+I R       + G  R +FV  L  + TI+E 
Sbjct: 1188 ALGLDLSF-VSYVFLMEPIWDRSMEEQVISR-----AHRMGATRPIFVETLAMRGTIEEQ 1241

Query: 180  VLQRLRT 186
            +L+ L+ 
Sbjct: 1242 MLKLLQD 1248


>gi|307261168|ref|ZP_07542844.1| hypothetical protein appser12_7310 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869150|gb|EFN00951.1| hypothetical protein appser12_7310 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 54.2 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 493 EVDKRSALIEHFKE-KAQIMIA-TEAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC- 548

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 ----HRYGQKFDVVVINFLNKRNLADQRVLELLTEKFKLFQGVLGA 590


>gi|255604124|ref|XP_002538172.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223513471|gb|EEF24211.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 319

 Score = 54.2 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      L+     + G G+NLQ   N++V + L W+    +Q   RI      + G   
Sbjct: 57  FRNDANTLVLLATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTE 110

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++ ++A  T +  V QRL  K  ++   L  
Sbjct: 111 VCHLWNMVAAETREGDVFQRLFAKLEVERDALGG 144


>gi|326522272|dbj|BAK07598.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 178

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +L        +GLNL    + ++      +     Q I RI      + G  ++ F++
Sbjct: 36  VQVLLMLIQHGANGLNLLEAQH-VILLEPLLNPSAEAQAISRI-----HRVGQDKSTFIH 89

Query: 169 YLIAQNTIDELVLQRLRTKS 188
             I + TI++ + +  R ++
Sbjct: 90  RFIVKKTIEDSIYKMNRGRA 109


>gi|119508908|ref|ZP_01628060.1| putative ATP-dependent helicase [Nodularia spumigena CCY9414]
 gi|119466437|gb|EAW47322.1| putative ATP-dependent helicase [Nodularia spumigena CCY9414]
          Length = 958

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++ + K P+ +         GLNL Y  + L+ F + W L   QQ   RI      
Sbjct: 494 KIVEQFGQEKSPVRILIATEVASEGLNLHYLSHKLIHFDIPWSLMTLQQRNGRID----- 548

Query: 158 QAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKST 189
           + G  R   + YL+ ++T++       ++Q L  K  
Sbjct: 549 RYGQTRQPEIRYLLTRSTLERMDEVKRIIQVLLVKDE 585


>gi|328953052|ref|YP_004370386.1| helicase domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453376|gb|AEB09205.1| helicase domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1309

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 37/143 (25%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLD--------------------------KDPCTIQ 102
            P+++   F   L  + K     RT+D                          +     +
Sbjct: 799 QPVVIFTRFFDTLTDIVKRL---RTIDIRLLIGAYSGQGGQYIDPKTFTLVGVEREEIKR 855

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +I +L    A+   GLNLQ G ++L+ F L W+  + +Q I RI      + G K
Sbjct: 856 RFLRSEIDILVCTDAAA-EGLNLQ-GADLLINFDLPWNPMKVEQRIGRID-----RIGQK 908

Query: 163 -RAVFVYYLIAQNTIDELVLQRL 184
              V+V  L    + +E+V  RL
Sbjct: 909 YETVYVLNLCYAGSAEEIVYGRL 931


>gi|192292173|ref|YP_001992778.1| SNF2-related protein [Rhodopseudomonas palustris TIE-1]
 gi|192285922|gb|ACF02303.1| SNF2-related protein [Rhodopseudomonas palustris TIE-1]
          Length = 961

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +     +     S   G+NLQ+  ++L+ F L W+ +  +Q I R       + G K  V
Sbjct: 505 KSDQKTILIATESGAEGINLQF-CSLLINFDLPWNPQRVEQRIGRC-----HRYGQKIDV 558

Query: 166 FVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            V  ++  +N  ++ + + L+ K  + + L  A
Sbjct: 559 TVVNMLNRKNQAEKRIYELLKNKFNLFEGLFGA 591


>gi|145608510|ref|XP_370061.2| hypothetical protein MGG_12793 [Magnaporthe oryzae 70-15]
 gi|145015982|gb|EDK00472.1| hypothetical protein MGG_12793 [Magnaporthe oryzae 70-15]
          Length = 550

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 119 CGHGL---NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G GL   NL    +I + F   W+     Q I R      ++ G  + VFV   +   T
Sbjct: 466 AGMGLPLLNLTVASHIFI-FEPQWNPSVESQAIGR-----AQRLGQDQQVFVTRYLVAGT 519

Query: 176 IDELVLQRLRTKSTIQD 192
           ++  +  + + K  +  
Sbjct: 520 VENRMHSQQKRKVELAK 536


>gi|240276209|gb|EER39721.1| SNF2 family helicase [Ajellomyces capsulatus H143]
          Length = 1198

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 49   KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP--------QGRTLDK--D 97
                  K+  L   +IE      II+ Y  N+    + +              TL     
Sbjct: 911  VATASAKLTYLLDKVIEFQEKEKIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTR 970

Query: 98   PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +NE + + +L        HGL++    + +   +  WD     Q I+R      
Sbjct: 971  SEYLSLFNETETVRVLLMDLRQAAHGLHI-ACASRVFIVNPIWDPNFESQAIKR-----A 1024

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             +    + V+V  L+ ++ ++  +    R K  + D  ++ +
Sbjct: 1025 HRISQNKPVYVETLVLKD-VECRI--ATREKDPLDDRTMSDI 1063


>gi|85859510|ref|YP_461712.1| snf2-related protein with C-terminal helicase [Syntrophus
           aciditrophicus SB]
 gi|85722601|gb|ABC77544.1| snf2-related protein with C-terminal Helicase [Syntrophus
           aciditrophicus SB]
          Length = 1178

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 41/216 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +   E    L+ E + A     +     +L   A      +  ++ +D K+ AL+  + 
Sbjct: 457 DQLADEYTAALELEQLRA-----EISALRELVEQA-----RRVREDANDSKLAALKKCLG 506

Query: 65  KAN-------AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           +A           +++       L  ++    +          G    +     + +  G
Sbjct: 507 EAQFLELKDGRGKLLIFTEHRDTLGYVRDHLERWGFSTCEIHGGMNPHERKRAQEVFRTG 566

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +     + G G+NLQ+  ++++ + + W+    +Q + RI      + G  R V+ 
Sbjct: 567 AQ--VCIATEAAGEGINLQF-CHLMINYDMPWNPTRLEQRLGRI-----HRIGQDRDVYA 618

Query: 168 YYLIAQNT------IDELVLQRLRTKSTIQDLLLNA 197
           +  +A ++      ++  +L RL  K    +  L  
Sbjct: 619 FNFVATDSEDGQPIVEGRILHRLLEKLDQMNEALEG 654


>gi|219883267|ref|YP_002478428.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
 gi|219862112|gb|ACL42452.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
          Length = 1086

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 32/170 (18%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTL---------D 95
             W    D KI AL  ++   +    ++V   +      +     +             D
Sbjct: 676 GDWDASKDSKINALVDLLRNEHPGEKVLVFTEYKDTADYIAATLREAGIRNVGLATGDTD 735

Query: 96  KDPCTIQEWNEGKIPL--------------LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 + ++ G   L              +         G NLQ   +I+V + L W +
Sbjct: 736 NPGAVARRFSPGSNKLPGQQDDASSSDPIDVLIATDVLSEGQNLQDS-HIVVNYDLPWAI 794

Query: 142 EEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q   R+      + G K   V+VY LI+   ++E +  R R K  +
Sbjct: 795 IRLIQRAGRVD-----RIGQKSETVYVY-LISHEKVEEQISLRQRIKMRL 838


>gi|170578325|ref|XP_001894363.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158599086|gb|EDP36796.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 800

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 17/142 (11%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFA 114
           A    +++       L   Q                 R  ++            I     
Sbjct: 254 AKGHRVLIFSQMTRVLDITQDYLVYKGYNYQRLDGSVRAEERFAAVNHFQTNSDIFCFLL 313

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G       GG+ ++F    ++ +   Q   R       + G  + V +  L+A+ 
Sbjct: 314 STRAGGL-GLNLTGGDTVIFLDSDFNPQNDIQAAARC-----HRIGQTKPVKIIRLVARY 367

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T+++++  R   K  +   +L 
Sbjct: 368 TVEDMIQCRAARKLKMTQEILE 389


>gi|295697398|ref|YP_003590636.1| helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295413000|gb|ADG07492.1| helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 1314

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           GR         + + +G+I +L    A+   GLNLQ   ++L+ F L W+  + +Q I R
Sbjct: 838 GRGEADREEIKERFLQGEIDILLCTDAAA-EGLNLQT-ADMLINFDLGWNPMKIEQRIGR 895

Query: 151 IGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           I      + G +   +FV  L    + +E+V  RL  +    +L++
Sbjct: 896 ID-----RIGQRHPEIFVVNLCYAGSEEEVVYGRLLQRLEQANLVV 936


>gi|168704008|ref|ZP_02736285.1| helicase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 752

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE------WNEGKIPLLFAHPAS 118
                P +V    N++   +Q+  P    +        +      +  G   +L      
Sbjct: 293 ANEPGPCVVWAELNAEADAVQELIPDAVQVAGADKDEDKLSRLKGFAAGTHRVLVTKTTV 352

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-ID 177
            G GLN Q+    +VF  L    E+  Q + R       + G    V VY +    T  D
Sbjct: 353 AGFGLNWQH-CRRMVFVGLSNSYEQFYQAVRRCW-----RFGQTGPVDVYLI---GTARD 403

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V   +  K    + ++  + + T  V
Sbjct: 404 AGVWANIARKQRDHEAMVEGMLQHTRDV 431


>gi|301057976|ref|ZP_07199033.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
 gi|300447943|gb|EFK11651.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
          Length = 164

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R +D     I+ +       +     +   G+NLQ+  ++++ F L W+ +  +
Sbjct: 70  GRVSGSRPIDVRTAIIEHF--RDNASILIATEAAAEGINLQF-CSLVINFDLPWNPQRIE 126

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRT 186
           Q I R       + G K  V V   +  +N  D  V + L  
Sbjct: 127 QRIGRC-----HRYGQKHDVVVINFLNERNAADRRVYELLNE 163


>gi|116194320|ref|XP_001222972.1| hypothetical protein CHGG_03758 [Chaetomium globosum CBS 148.51]
 gi|88179671|gb|EAQ87139.1| hypothetical protein CHGG_03758 [Chaetomium globosum CBS 148.51]
          Length = 910

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L L    +        W+    +Q + RI      + G  R V       +++ +E V++
Sbjct: 822 LTLTV-ASRAYLMEPHWNPTLEEQALARI-----HRIGQMREVTTVRFYIRDSFEERVIE 875

Query: 183 RLRTKSTIQDLLLN 196
               K  +  +LL+
Sbjct: 876 LQNAKKDLARVLLS 889


>gi|255947902|ref|XP_002564718.1| Pc22g06920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591735|emb|CAP97980.1| Pc22g06920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1292

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 22/165 (13%)

Query: 49   KEVHDEKI-KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCT--- 100
            + V   K+   LE +++      II+ Y  ++  A +++       + RT          
Sbjct: 970  EGVASAKLRYLLEQVLKFEKTDKIIIFYEHDNVAAWVEQGLDLIAVKFRTYASTASMGSN 1029

Query: 101  -----IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 + ++    ++ +L        HGL++    + +   +  W+     Q I+R    
Sbjct: 1030 LKSENLSDFRQTHEVRVLLMSVKEASHGLHIPE-ASRMYIVNPIWERNVESQAIKR---- 1084

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G KR V+V  L+  +T++  +L R  +K+   +   +A K
Sbjct: 1085 -AHRIGQKRPVYVETLVLGDTLEHRMLNR--SKNMTDEETKHAGK 1126


>gi|118468269|ref|YP_885588.1| SNF2 domain-containing protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118169556|gb|ABK70452.1| SNF2 domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 663

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 17/160 (10%)

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWN 105
            K+  L  +I +A  N A ++V  HF   L  ++KA P         ++      +  + 
Sbjct: 501 AKLDRLIELISEAHINGARVVVLSHFPGVLETIRKALPGTVFGPLDESVPDRQAMLDAFA 560

Query: 106 EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + P  L A        L       + +     W     Q   ER  + R ++      
Sbjct: 561 TARGPATLLAQLDVGPLDLRRLSMPLVAIVTEPQW-----QPRAERRMIGRTQRLSDLHT 615

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTI---QDLLLNALKKE 201
           V V+ L+A+ +IDE + +           QD ++ A +  
Sbjct: 616 VRVHRLLARGSIDEPIRRLAHHPDEPPPHQDEMVRAEQTR 655


>gi|115400926|ref|XP_001216051.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114189992|gb|EAU31692.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1361

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 54   EKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWN 105
             KI  L   I    E    A  +V   + S L  L+ AF + +     +D +       +
Sbjct: 1231 TKIDMLARHILWLREHDPGAKSVVFSQYKSFLTYLRVAFSKFKIGFSSVDSNDGIHNFKS 1290

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +     H  +   GLNL    + +       +     Q I R+      + G  R  
Sbjct: 1291 DPSVECFLLHAKAQSSGLNLVNATH-VFLCEPLINTAIELQAIARV-----HRIGQHRPT 1344

Query: 166  FV 167
             V
Sbjct: 1345 TV 1346


>gi|14521088|ref|NP_126563.1| putative deah atp-dependent helicase [Pyrococcus abyssi GE5]
 gi|5458305|emb|CAB49794.1| Putative DEAH ATP-dependent helicase [Pyrococcus abyssi GE5]
          Length = 973

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 26/152 (17%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP--------------QGRTLDK 96
           D K+  +  ++++       +I+   F   L  L+K  P               G    K
Sbjct: 381 DTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGK 440

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I+++ + GK   L         GLNLQ   N+L+ +   W   + +Q + R+    
Sbjct: 441 VEEEIRKFEKHGK---LLISTDVASEGLNLQV-ANVLINYEAPWTPIKLEQRVGRVW--- 493

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +   KR V  Y +     +D  VL  L  K
Sbjct: 494 --RINQKRDVKAYTIFLDTEVDMYVLNNLYRK 523


>gi|321264055|ref|XP_003196745.1| DNA repair protein rad8 [Cryptococcus gattii WM276]
 gi|317463222|gb|ADV24958.1| DNA repair protein rad8, putative [Cryptococcus gattii WM276]
          Length = 1919

 Score = 54.2 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 54   EKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW 104
             K++ L  +I        I+V   +     ++ +A   G+               T+  +
Sbjct: 1693 AKLEHLVNLIHSIPKDDRILVFLQWEDLAGKVSEALSAGKIPHVTLSGSAKSRANTLDRF 1752

Query: 105  ---NEGKIPLLFAHPA-SCGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQ 158
               N     +L      +   G NL    N  +F        L  ++  +E   + R R+
Sbjct: 1753 QSTNAATARVLLLKMNDASAAGSNLTT-ANHAIFLGPLFTNSLFNYR-AVETQAIGRVRR 1810

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G ++ V ++ L+A +TID  +    R 
Sbjct: 1811 YGQQKKVHIHRLLALDTIDMTIFNTRRA 1838


>gi|242055593|ref|XP_002456942.1| hypothetical protein SORBIDRAFT_03g046010 [Sorghum bicolor]
 gi|241928917|gb|EES02062.1| hypothetical protein SORBIDRAFT_03g046010 [Sorghum bicolor]
          Length = 1175

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 39/188 (20%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEK----IKALEVIIEKANAA------------------ 69
             ++L       D +  W+     K    I+ L  + E  N                    
Sbjct: 953  LIELQPSYKQDDWDPDWQSTSSSKVAYLIEKLRSLRETGNNITDSVGHANTLSYQPQAVL 1012

Query: 70   -PIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPAS 118
              +I+   F   +  +Q+       +                + ++ E    +      +
Sbjct: 1013 DKVIIFSQFLEHIHVIQQQLTIAGIIYAGMYSPMPLASKRSALMKFQEDPTCMALVMDGT 1072

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  + +      WD    +Q+I R       + G  R + V  L  + T++E
Sbjct: 1073 AALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPIHVETLAMRGTVEE 1126

Query: 179  LVLQRLRT 186
             +L+ L+ 
Sbjct: 1127 QMLRLLQD 1134


>gi|163801697|ref|ZP_02195595.1| helicase, putative [Vibrio sp. AND4]
 gi|159174614|gb|EDP59416.1| helicase, putative [Vibrio sp. AND4]
          Length = 1149

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           KA  + +++      I ++   +   L+   P + G GL +  G N +V     W+  + 
Sbjct: 871 KAVAKRKSVPTRKSMIADFEAKEGFNLIVMSPVAAGVGLTV-VGANHVVHLERHWNPAKE 929

Query: 145 QQMIERIGVTRQRQAGFKRAVFVY 168
            Q  +R+      + G ++ V +Y
Sbjct: 930 AQATDRV-----YRIGQEKEVHIY 948


>gi|325287281|ref|YP_004263071.1| helicase domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322735|gb|ADY30200.1| helicase domain protein [Cellulophaga lytica DSM 7489]
          Length = 945

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 28/150 (18%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQ-------- 90
           +K   E  D K   L+  +++       N   II+     + L  L+K   +        
Sbjct: 411 QKIVDEKSDSKYNQLKFKLDQMGWKGKKNDERIIIFAERRATLNELEKNLTEDFGLKPKA 470

Query: 91  -----GRTLDKDPCTI-QEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G   D     I +++   + +I L  A   +   G+NL Y  N +  + + W + 
Sbjct: 471 VVQFNGSLTDTQQQDILEDFSKEDSEIRLFLAS-DAGSQGVNLHYFCNQMFNYDIPWSII 529

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              Q   RI      + G K+  F+YYLI+
Sbjct: 530 TLDQRNGRID-----RFGQKQTPFIYYLIS 554


>gi|329121768|ref|ZP_08250385.1| SNF2 family helicase [Dialister micraerophilus DSM 19965]
 gi|327468238|gb|EGF13724.1| SNF2 family helicase [Dialister micraerophilus DSM 19965]
          Length = 888

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 28/161 (17%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K      +++K       ++V   F   L ++     +          G    +    
Sbjct: 695 SPKFDKGIELVQKLVNEGKKVLVWGIFVDTLYKITNTLREKGINVNLVYGGTNKLERTIL 754

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I E+  G + +L ++P + G  ++L    +  V+F   ++L    Q  +RI      + G
Sbjct: 755 IDEFRNGDVQVLVSNPQTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRI-----HRLG 809

Query: 161 --FKRAVFVYYLIAQ---------NTIDELVLQRLRTKSTI 190
               +    YYL              IDE +  RL+ K  +
Sbjct: 810 LDQNQYTRYYYLQTASENFDSFRPGYIDENIYIRLKRKEKL 850


>gi|302423432|ref|XP_003009546.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352692|gb|EEY15120.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 539

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E  + +L A   +C  GLNL    N ++    WW+    QQ   R+      + G  +  
Sbjct: 411 EPTVKVLVATMGTCSEGLNLTC-ANRVIVVDAWWNSAREQQSFGRVV-----RTGQCKET 464

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +   L + N+ID+ + +   +K+ + D
Sbjct: 465 YCVRLKSPNSIDDKIERIQTSKNEVVD 491


>gi|301091941|ref|XP_002896145.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262094965|gb|EEY53017.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1481

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 38/214 (17%)

Query: 12   YCDLQGENIEAFNSASKTVK--CLQLANGAVYYDEEKHWKEVH------DEKIKALEVII 63
             C ++   I     AS++        + G    +   H   +H        K+ AL   +
Sbjct: 1126 VCAIENVTIVVERLASESTSINLEDFSQGEAISEVPSHPSPLHCDGGSLGSKLDALLERV 1185

Query: 64   E----KANAAPIIVAYHFNSDLARLQKAFPQGR-------TLDKDPCTIQEWNEGKIPLL 112
            E    +  +   ++   ++  L  + +   +         T  + P  + ++       +
Sbjct: 1186 EMLRQENPSVKCLLFSQWSQMLELVMQPLRRVGVYCFMYGTKRQLPKLLAQFQACPAACV 1245

Query: 113  FAHP-ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
             A P     +GLN+     +L             Q + R+      + G  R   V+  I
Sbjct: 1246 LALPFKVGANGLNIVEATEVL-LIEPLLSSSIEAQAVNRV-----HRLGQTRQTRVHRFI 1299

Query: 172  AQNTIDELVLQR------------LRTKSTIQDL 193
             Q +++E + +               +K  I D 
Sbjct: 1300 VQGSVEERIFRLGHKLKDHGAEDDQESKEEINDE 1333


>gi|28199206|ref|NP_779520.1| hypothetical protein PD1321 [Xylella fastidiosa Temecula1]
 gi|182681936|ref|YP_001830096.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|28057312|gb|AAO29169.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632046|gb|ACB92822.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|307578194|gb|ADN62163.1| hypothetical protein XFLM_00705 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 55

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 29/38 (76%)

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VF+++++A +T+DELV+ R  +K  +QDLLL A+K+ 
Sbjct: 4   PVFIHHIVAADTVDELVMVRRESKREVQDLLLEAVKRR 41


>gi|70932532|ref|XP_737773.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56513438|emb|CAH86839.1| hypothetical protein PC302186.00.0 [Plasmodium chabaudi chabaudi]
          Length = 99

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +     +R    R  + G K+ V++Y L  +NTI+E V +  + K  +   
Sbjct: 2   DWNPPNDRQAEDRVHRLGQKKEVYIYRLCCKNTIEETVFKCCKAKLHLDQA 52


>gi|323969194|gb|EGB64496.1| hypothetical protein ERHG_04662 [Escherichia coli TA007]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|46401635|ref|YP_006479.1| DarB [Enterobacteria phage P1]
 gi|33338662|gb|AAQ13985.1| DarB [Enterobacteria phage P1]
 gi|33338771|gb|AAQ14093.1| DarB [Enterobacteria phage P1]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|324111110|gb|EGC05096.1| hypothetical protein ERIG_04245 [Escherichia fergusonii B253]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|260871137|ref|YP_003237917.1| defense against restriction protein [Escherichia coli O111:H- str.
            11128]
 gi|257767716|dbj|BAI39209.1| defense against restriction protein [Escherichia coli O111:H- str.
            11128]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|33323519|gb|AAQ07489.1|AF503408_13 DarB [Enterobacteria phage P7]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|120610429|ref|YP_970107.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588893|gb|ABM32333.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 13/147 (8%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWNEG 107
            +I  +  I+        ++ +    +   LQ+A P+       + LD+    I  + +G
Sbjct: 300 ARIDKVREIVNADPQDSFVIWHDLEDERHALQEAIPEAVSVWGTQDLDEREDRIVGFGDG 359

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL   P   G G N Q   +  VF  + +   +  Q I R+      + G  + V +
Sbjct: 360 AFRLLSTKPVIAGAGCNFQRHCHREVFAGIGFKFRDFIQAIHRV-----HRFGQTKPVRI 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +   +  VL+ L+ K    D +
Sbjct: 415 DIIHTE--AEREVLRTLQEKWRQHDEV 439


>gi|331649967|ref|ZP_08351043.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041224|gb|EGI13378.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 2255

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1461 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1519

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1520 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1560


>gi|300361150|ref|ZP_07057327.1| SNF2 family helicase [Lactobacillus gasseri JV-V03]
 gi|300353769|gb|EFJ69640.1| SNF2 family helicase [Lactobacillus gasseri JV-V03]
          Length = 630

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
            +IEK  A    ++V   F   + ++     +              D     I  +  G 
Sbjct: 455 NLIEKLVAQGKKVLVWGMFVGTMQKIADTLNEKGINTTLIYGATPKDDREKMIDNFRTGD 514

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L ++P + G  ++L    +  V+F   ++L    Q  +RI      Q  + R    Y
Sbjct: 515 AQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPQNQYTR---YY 571

Query: 169 YLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
           YL+ +        ID  V ++L+ K  +   +L+A+  + +
Sbjct: 572 YLMTKGDIAHMGFIDSTVYRKLKDKEKV---MLDAIDGQLL 609


>gi|315050244|ref|XP_003174496.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
 gi|311339811|gb|EFQ99013.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
          Length = 2118

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 54   EKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQGRTL-------DKDPCT-I 101
             K  A+  ++++    P    +++   F   +    KA              D+ P + I
Sbjct: 1923 SKFTAVIDLLQEPEKIPMDDQVLLFIQFPELMDAASKALGSAGIPYIVVQPGDRAPASKI 1982

Query: 102  QEWNEGKIPL----LFAHPAS-CGHGLNLQYGGNILVFFSL--WWDLEEHQQMIERIGVT 154
             E+  GK  +    L  +       GLNLQ   N ++FF         ++   +    + 
Sbjct: 1983 SEFQNGKESVKSKVLILNLGDVTASGLNLQN-ANHIIFFGPLVAQSQYDYDSGMA-QAIG 2040

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R R+ G  + V +Y+++A  T++  + ++ R 
Sbjct: 2041 RSRRYGQLKHVHIYHVLALKTVEVNIFEQRRR 2072


>gi|325495636|gb|EGC93500.1| DarB [Escherichia fergusonii ECD227]
          Length = 2221

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1427 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1485

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1486 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1526


>gi|302388025|ref|YP_003823847.1| SNF2-related protein [Clostridium saccharolyticum WM1]
 gi|302198653|gb|ADL06224.1| SNF2-related protein [Clostridium saccharolyticum WM1]
          Length = 2455

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++ +L       G G N+Q     +    + W   +  Q   RI     RQ    + V 
Sbjct: 2093 GQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQRNGRII----RQGNRNKEVQ 2148

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q L  K      ++ +
Sbjct: 2149 VYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2179


>gi|257067735|ref|YP_003153990.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
 gi|256558553|gb|ACU84400.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
          Length = 961

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +D+    +  +   +   +     +   G+NLQ+  ++LV + L W+ +  +Q I R+  
Sbjct: 491 VDRRKALVDYF--REQGTIMIATEAAAEGINLQF-CSMLVNYDLPWNPQRVEQRIGRV-- 545

Query: 154 TRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
               + G K  V V     +  I ++ +L+ L  K  +   +  A
Sbjct: 546 ---HRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGA 587


>gi|283796708|ref|ZP_06345861.1| protein, SNF2 family [Clostridium sp. M62/1]
 gi|291075592|gb|EFE12956.1| protein, SNF2 family [Clostridium sp. M62/1]
          Length = 2454

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++ +L       G G N+Q     +    + W   +  Q   RI     RQ    + V 
Sbjct: 2092 GQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQRNGRII----RQGNRNKEVQ 2147

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q L  K      ++ +
Sbjct: 2148 VYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2178


>gi|225374536|ref|ZP_03751757.1| hypothetical protein ROSEINA2194_00151 [Roseburia inulinivorans DSM
            16841]
 gi|257438036|ref|ZP_05613791.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|225213596|gb|EEG95950.1| hypothetical protein ROSEINA2194_00151 [Roseburia inulinivorans DSM
            16841]
 gi|257199696|gb|EEU97980.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2454

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++ +L       G G N+Q     +    + W   +  Q   RI     RQ    + V 
Sbjct: 2092 GQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQRNGRII----RQGNRNKEVQ 2147

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q L  K      ++ +
Sbjct: 2148 VYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2178


>gi|326915689|ref|XP_003204146.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like, partial
           [Meleagris gallopavo]
          Length = 118

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + KI +L     +  +GLN+    ++L       +     Q I R+      + G  ++ 
Sbjct: 9   DPKINILLLPLHTGSNGLNIIEATHVL-LVEPILNPAHELQAIGRV-----HRIGQTKST 62

Query: 166 FVYYLIAQNTIDELVLQRLRT 186
            V+  + + TI+E +   L+T
Sbjct: 63  IVHRFLIKATIEERMQTMLKT 83


>gi|306836192|ref|ZP_07469176.1| helicase [Corynebacterium accolens ATCC 49726]
 gi|304567913|gb|EFM43494.1| helicase [Corynebacterium accolens ATCC 49726]
          Length = 997

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D+    +  +   G I +      +   G+NLQ+  ++L+ + L W+ +  +Q I RI  
Sbjct: 528 DRRKALVDYFRESGSIMIA---TEAASEGINLQF-CSMLINYDLPWNPQRVEQRIGRI-- 581

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLNA 197
               + G K  V +     +    E  +L+ L  K  + D +  A
Sbjct: 582 ---HRYGQKHDVVIVNFFNEGNAAEARILELLENKFHLFDSVFGA 623


>gi|237708935|ref|ZP_04539416.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|229456997|gb|EEO62718.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
          Length = 959

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT--IDEL 179
           G+NLQ G N ++ + L W+    +Q   RI    Q     ++ V ++ L  ++T  +D++
Sbjct: 551 GVNLQTGFNCVIHYDLPWNPNRMEQRNGRIDRFGQ----TEKEVAIFTLFDEDTNPVDKI 606

Query: 180 VLQRLRTKST 189
           +++ L  K  
Sbjct: 607 IMKVLYRKQN 616


>gi|323186569|gb|EFZ71913.1| helicase conserved C-terminal domain protein [Escherichia coli 1357]
          Length = 2221

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1427 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1485

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1486 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1526


>gi|266621003|ref|ZP_06113938.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867319|gb|EFC99617.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 406

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
           A G  Y    +        +  AL  I+EK      I+ Y+F+ +L  L++ F      +
Sbjct: 251 AAGLCYV--WRKIVNTDQSRQIALLEIVEKH--PKAIIFYNFDYELELLKEIFSGYEVRE 306

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +    Q        +      +   G N     + ++F+S  +  +   Q   RI    
Sbjct: 307 WNGHKHQPVPTSDAWVYLVQYNAGAEGWNC-ITTDTIIFYSQNYSYKIMAQSAGRIDRMN 365

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                    ++ Y+L +++ ID  + + L+ K T
Sbjct: 366 TPYT----DLYYYHLKSRSGIDLAISKALKDKKT 395


>gi|148654631|ref|YP_001274836.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566741|gb|ABQ88886.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 986

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + +V + L W+    +Q   R+    Q ++   R V +Y     N +DE V+
Sbjct: 570 GINLQHSFDAVVHYDLPWNPNRLEQREGRVDRYGQ-RSAVVRTVLIYG--QDNPMDEAVM 626

Query: 182 QRLRTKS 188
           + L  K+
Sbjct: 627 KVLLRKA 633


>gi|188994741|ref|YP_001928993.1| SNF2-related helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188594421|dbj|BAG33396.1| SNF2-related helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 965

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 21/152 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLA--RLQKAFPQG----------RTLDKDPCTIQEWNE 106
           L ++ E+     ++     N+D    R+ + + +           +  D     + E+  
Sbjct: 442 LRLLSERGYEGQVMTFSGTNNDARSTRILRRWREANQDTGLVTGVKEADMRAALVDEFRH 501

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +     +   G+NLQ+  +++V + L W+ +  +Q I R       + G +  V 
Sbjct: 502 RAT--IMIATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC-----HRYGQRHDVV 553

Query: 167 VYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           V   + + N  D  V + L  K  + D +  A
Sbjct: 554 VINFLNKSNAADRRVYELLDEKFRLFDGVFGA 585


>gi|13242495|ref|NP_077508.1| EsV-1-23 [Ectocarpus siliculosus virus 1]
 gi|13177305|gb|AAK14449.1|AF204951_23 EsV-1-23 [Ectocarpus siliculosus virus 1]
          Length = 612

 Score = 53.8 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 31/154 (20%)

Query: 68  AAPIIVAYH------FNSDLARLQK----AFPQGRTLDKDPCTIQE------WNEGKIPL 111
              ++ AYH         ++ RL        PQ  T + D    +       +N G++ L
Sbjct: 444 GRLLLYAYHRDTITDLEGEIRRLCADKNIVSPQISTYNGDTSARERMRIKEAFNNGEMDL 503

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR---AVFVY 168
           L     +   GL+LQ   + +  F LWW++ +  Q+I R    +      K     V+VY
Sbjct: 504 LIIS-KAGSVGLDLQC-TSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVY 561

Query: 169 Y--LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + +        Q    K     +L +A+KK
Sbjct: 562 QSVFVTK--------QAKGVKVFDAQVLFDAVKK 587


>gi|120610367|ref|YP_970045.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588831|gb|ABM32271.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWNEG 107
            +I  +  I++       ++ +    +   LQ A P+       + LD+    I  + +G
Sbjct: 300 ARIDKVREIVDADPRDSFVIWHDLEDERHALQDAIPEAVSVWGTQDLDEREDRIVGFGDG 359

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL   P   G G N Q   +  VF  + +   +  Q I R+      + G  + V +
Sbjct: 360 AFRLLSTKPVIAGAGCNFQRHCHREVFAGIGFKFRDFIQAIHRV-----HRFGQTKPVRI 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +   +  VL++++ K    D +
Sbjct: 415 DIIHTE--AEREVLRKMQEKWRQHDEV 439


>gi|256025065|ref|ZP_05438930.1| Helicase [Escherichia sp. 4_1_40B]
          Length = 949

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T D     ++++       L     +   G+NLQ+  ++L+ + L W+ +  +
Sbjct: 472 GRVSGSSTADMKAALVEKF--RDEGTLMICTEAGAEGINLQF-CSLLINYDLPWNPQRVE 528

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
           Q I R+      + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 529 QRIGRV-----HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 576


>gi|87307450|ref|ZP_01089594.1| Helicase, C-terminal [Blastopirellula marina DSM 3645]
 gi|87289620|gb|EAQ81510.1| Helicase, C-terminal [Blastopirellula marina DSM 3645]
          Length = 1214

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K     ++  +G + +L    A  G G N+Q     L      W   E +Q   RI    
Sbjct: 792 KKQALFEKVRQGTVRVLLGSTAKMGTGTNVQKRLIALHHLDAPWKPAEVEQRDGRIL--- 848

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RQ    + V +Y  + + + D  + Q L TK+     ++  
Sbjct: 849 -RQGNQNKEVAIYRYVTEGSFDAYMWQALETKARFISQVITG 889


>gi|218696569|ref|YP_002404236.1| Helicase [Escherichia coli 55989]
 gi|218353301|emb|CAU99275.1| Helicase [Escherichia coli 55989]
          Length = 955

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T D     ++++       L     +   G+NLQ+  ++L+ + L W+ +  +
Sbjct: 478 GRVSGSSTADMKAALVEKF--RDEGTLMICTEAGAEGINLQF-CSLLINYDLPWNPQRVE 534

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
           Q I R+      + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 535 QRIGRV-----HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 582


>gi|302387900|ref|YP_003823722.1| helicase domain protein [Clostridium saccharolyticum WM1]
 gi|302198528|gb|ADL06099.1| helicase domain protein [Clostridium saccharolyticum WM1]
          Length = 2632

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            +   +  QL    ++ D+     +      +A + ++      P  +A  F  D      
Sbjct: 2075 TAENRLTQL----IFCDQGTPKGDGSFNFYEATKAVLIAQGVKPEEIA--FIHD------ 2122

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     ++   G+I +L       G G+N+Q     L    + W   +  Q
Sbjct: 2123 ----AKTDVQREQLFEKVRTGEIRILMGSTGKMGTGMNVQNKLVALHHLDVPWRPSDLIQ 2178

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI     RQ      + ++  I +NT D  + Q L  K      ++  
Sbjct: 2179 RNGRIL----RQGNDNEEISIFNYITENTFDAYLWQILEQKQRYISQIMTG 2225


>gi|157157048|ref|YP_001464327.1| SNF2 family helicase [Escherichia coli E24377A]
 gi|157079078|gb|ABV18786.1| helicase, SNF2 family [Escherichia coli E24377A]
          Length = 951

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T D     ++++       L     +   G+NLQ+  ++L+ + L W+ +  +
Sbjct: 474 GRVSGSSTADMKAALVEKF--RDEGTLMICTEAGAEGINLQF-CSLLINYDLPWNPQRVE 530

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
           Q I R+      + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 531 QRIGRV-----HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 578


>gi|296813227|ref|XP_002846951.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
 gi|238842207|gb|EEQ31869.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
          Length = 1955

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHF---------NSDLAR 83
                Y  +++   +    K  A+  +++     P    +++   F            LA 
Sbjct: 1744 CHFDYNAQDRELAKYGSSKFTAVINLLQDTKKIPGDDQVLLFIQFPELMDAAATALQLAN 1803

Query: 84   LQKAFPQGRTLDKDPCT-IQEWNEGKI----PLLFAHPAS-CGHGLNLQYGGNILVFFSL 137
            +     Q    D+ P   I E+  GK      +L  +       GLNLQ   N ++FF  
Sbjct: 1804 IPHIVVQPG--DRTPGGKISEFQNGKETVKSKVLILNLGDVTASGLNLQN-ANHIIFFGP 1860

Query: 138  --WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                   ++   +    + R R+ G  + V +Y+++A  T++  + ++ R 
Sbjct: 1861 LVARSQYDYDSGMA-QAIGRSRRYGQLKHVHIYHVLALRTVEVNIFEQRRR 1910


>gi|86156995|ref|YP_463780.1| RNA polymerase associated protein rapA [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773506|gb|ABC80343.1| RNA polymerase associated protein rapA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 898

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPII 72
           L     E +  +S+ ++  ++  GA      +       EK KAL  +  +       ++
Sbjct: 345 LLAHLAERYGLSSRLIRNRRVKVGAFTSRALRRVDVGEGEKPKALVDLCARLARAGDKVL 404

Query: 73  VAYHFNSDLARLQKA-------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           V   F  DL  L+               +    +L+     +  + + + P+L     S 
Sbjct: 405 V---FGGDLEALRGLQGGLAEAGLEALLYDDAPSLEARDRLVARFRDPEGPMLLLSGESG 461

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G N Q+  + LV   L       +Q I R+      + G  R V ++  +     DE 
Sbjct: 462 GEGRNFQF-AHHLVCADLPASPLVLEQRIGRLD-----RLGQTRPVEIHVPVEPG--DEA 513

Query: 180 VLQRL 184
            L  L
Sbjct: 514 FLADL 518


>gi|315043012|ref|XP_003170882.1| hypothetical protein MGYG_06873 [Arthroderma gypseum CBS 118893]
 gi|311344671|gb|EFR03874.1| hypothetical protein MGYG_06873 [Arthroderma gypseum CBS 118893]
          Length = 1118

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 16/90 (17%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGL++    + +   +  WD     Q I+R       +    R V+V  L+ ++T+++
Sbjct: 895 ASHGLHI-AAASRVFIVNPIWDPNIESQAIKR-----AHRISQTRPVYVETLVLKDTLED 948

Query: 179 LVLQRLR----------TKSTIQDLLLNAL 198
            +L+R +           K  + D  ++++
Sbjct: 949 KMLRRRKAMTSTEMQHAEKDMLDDGTMSSI 978


>gi|330824390|ref|YP_004387693.1| SNF2-like protein [Alicycliphilus denitrificans K601]
 gi|329309762|gb|AEB84177.1| SNF2-related protein [Alicycliphilus denitrificans K601]
          Length = 959

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +T D     ++ + E GK+ +      +   G+NLQ+  ++++ + L W+ +  +
Sbjct: 483 RITGSKTADTRAALVEHFKERGKVMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIE 538

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   + + N  D  V + L  K  + + +  A
Sbjct: 539 QRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYELLSQKFQLFEGVFGA 586


>gi|258545975|ref|ZP_05706209.1| helicase/SNF2 domain protein [Cardiobacterium hominis ATCC 15826]
 gi|258518780|gb|EEV87639.1| helicase/SNF2 domain protein [Cardiobacterium hominis ATCC 15826]
          Length = 937

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +       + DK    I  +      ++ A   +   G+NLQ+  ++L+ + L W+ +  
Sbjct: 463 RNRITGAVSADKRAALIDRFRH-DAQIMIA-TEAAAEGVNLQF-CSLLINYDLPWNPQRV 519

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q I R       + G +  V V   +  +N  D+ +L+ L  K  +   L  A
Sbjct: 520 EQRIGRC-----HRYGQESDVVVINFLNRRNEADKRILELLTEKFQLFSGLFGA 568


>gi|224008246|ref|XP_002293082.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971208|gb|EED89543.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
           CCMP1335]
          Length = 434

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R+  + P     D+     +      I L      + G GL L    + ++F  L W   
Sbjct: 335 RIDGSVPPA---DRALRVRKFQTNDSIRLAILSMTAAGVGLTLT-AASSIIFTELHWVPG 390

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---TIDELVLQRLRTK 187
              Q  +R       + G   AV + Y I ++   ++D  +   L  K
Sbjct: 391 VLAQAEDRC-----HRIGQVNAVNIMYAICKDEDVSVDRSLWAMLGRK 433


>gi|72390878|ref|XP_845733.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175831|gb|AAX69958.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802269|gb|AAZ12174.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1541

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 41/163 (25%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR-----TLDKDPCTIQE----- 103
              I+ LE I ++A    ++V     + L   + A  +        +D     +Q      
Sbjct: 1343 RLIQLLEDIWDEAPDDNVLVFSKVPAILQMGEAALKEAGYQNVHVIDNHVTLVQRKKIFA 1402

Query: 104  -----------------------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                                    N G   +LF        GLNL +  N L+F     +
Sbjct: 1403 QLHANAATTASATGSASGSTPSGNNRGH--VLFLSSRVACSGLNLVF-ANRLIFMEPNLN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
              +HQQ + RI      + G  +  +VY + A  TI+E ++ R
Sbjct: 1460 PAQHQQAVGRID-----RCGQLKRTYVYVMYAPRTIEERIMNR 1497


>gi|317129326|ref|YP_004095608.1| type III restriction protein res subunit [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474274|gb|ADU30877.1| type III restriction protein res subunit [Bacillus cellulosilyticus
           DSM 2522]
          Length = 553

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTI-QEWNE 106
           +++K+  L+ I+EK +  PII+   +   L R+ +        G T   +   I  ++ +
Sbjct: 398 NEQKLSLLKRIVEKHHDVPIIIIGQYLDQLHRIARELQLPLITGETKKSERQKIYDDFKK 457

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G I  L          ++L      +     +   +E  Q I R+   ++        V+
Sbjct: 458 GNIQTLVLS-RVANMAVDLPDAQVAIQISGTYGSRQEEAQRIGRLLRPKK----SGEPVY 512

Query: 167 VYYLIAQNTIDELV 180
            Y LI   T +E V
Sbjct: 513 FYTLITPMTQEEEV 526


>gi|312078996|ref|XP_003141983.1| hypothetical protein LOAG_06399 [Loa loa]
 gi|307762856|gb|EFO22090.1| hypothetical protein LOAG_06399 [Loa loa]
          Length = 387

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           + N   I+  +    ++              + P  + E     + LL    +S   GLN
Sbjct: 244 RTNRQKILADFRLKPEIEASCLLLLSFNCFIEYPRKLYENFLYDLKLLVMPMSSGARGLN 303

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           L    N ++F     D+ +  Q I RI      + G K+A+ V++ +   +I+E + 
Sbjct: 304 LT-AANNIIFVEPQMDISQIAQAIGRID-----RIGQKKAMMVHHFVVYGSIEEQIY 354


>gi|168244020|ref|ZP_02668952.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451781|ref|YP_002048512.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410085|gb|ACF70304.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337051|gb|EDZ23815.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 952

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKSQSPLRLLICSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|308455330|ref|XP_003090212.1| hypothetical protein CRE_04419 [Caenorhabditis remanei]
 gi|308265843|gb|EFP09796.1| hypothetical protein CRE_04419 [Caenorhabditis remanei]
          Length = 1666

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNS-------DLARLQKA----FPQGRTLDKDPCTI 101
               I+ +  I++  ++  IIV              L ++ K     F      +     +
Sbjct: 1503 SAAIQIMREILDTDSSNKIIVFTSVEPSSTTVWNYLQKIFKLAKLPFSATSRYNCGKKIV 1562

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                   + +L    + C +GLN+  G N ++F           Q I RI      + G 
Sbjct: 1563 DFEVSEDVKILLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRIN-----RFGQ 1616

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRT 186
            KRA+ V +L+ + ++D  + +  + 
Sbjct: 1617 KRAMRVIHLVVEGSLDSELREIAKN 1641


>gi|308469313|ref|XP_003096895.1| hypothetical protein CRE_24695 [Caenorhabditis remanei]
 gi|308241310|gb|EFO85262.1| hypothetical protein CRE_24695 [Caenorhabditis remanei]
          Length = 1658

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNS-------DLARLQKA----FPQGRTLDKDPCTI 101
               I+ +  I++  ++  IIV              L ++ K     F      +     +
Sbjct: 1495 SAAIQIMREILDTDSSNKIIVFTSVEPSSTTVWNYLQKIFKLAKLPFSATSRYNCGKKIV 1554

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                   + +L    + C +GLN+  G N ++F           Q I RI      + G 
Sbjct: 1555 DFEVSEDVKILLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRIN-----RFGQ 1608

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRT 186
            KRA+ V +L+ + ++D  + +  + 
Sbjct: 1609 KRAMRVIHLVVEGSLDSELREIAKN 1633


>gi|331655819|ref|ZP_08356808.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331046593|gb|EGI18682.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 1830

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1036 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1094

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1095 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1135


>gi|224121478|ref|XP_002318592.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222859265|gb|EEE96812.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 726

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
           A  +  C  L+   +  + +         K+          ++  +I+  H    L  +Q
Sbjct: 41  AKLSGFCEWLSIHPLISESDGV------AKLDV------NHSSQKMIIFAHHLKVLDGVQ 88

Query: 86  KA-FPQGR---TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +    +G     +D +       N   + +      + G GL+     N +VF  L    
Sbjct: 89  EFVHEKGVGFVRIDGNTLASDRQNA--VKIAIIGITAGGVGLDFSSAQN-VVFLELPQSP 145

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               Q  +R       + G   AV +Y   A++T+DE   Q L  
Sbjct: 146 SLMLQAEDR-----AHRRGQSNAVNIYIFCAKDTMDETCWQNLNK 185


>gi|170021860|ref|YP_001726814.1| helicase domain-containing protein [Escherichia coli ATCC 8739]
 gi|169756788|gb|ACA79487.1| helicase domain protein [Escherichia coli ATCC 8739]
          Length = 952

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++++ + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 KTVEDFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|303271539|ref|XP_003055131.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226463105|gb|EEH60383.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1408

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
            F     R+  + P           +  + + +          + G GL  Q   +++VF
Sbjct: 720 RFLPSFVRIDGSTPNAE----RGEAVDRFRDDERCVAALISIKAGGTGLEFQK-ASVVVF 774

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             L     + +Q  +R+      + G K +V VY+L+A  +
Sbjct: 775 AELPESAADVEQAEDRV-----HRRGQKGSVNVYFLVAHGS 810


>gi|74316951|ref|YP_314691.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056446|gb|AAZ96886.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 932

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +T D     ++ + E GK+ +      +   G+NLQ+  ++++ + L W+ +  +
Sbjct: 456 RITGSKTADTRAALVEHFKERGKVMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIE 511

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   + + N  D  V + L  K  + + +  A
Sbjct: 512 QRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYELLSQKFQLFEGVFGA 559


>gi|221506326|gb|EEE31961.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 2744

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE--RI- 151
            ++         + +  +L        HGL+L    ++L+         E Q   +  R+ 
Sbjct: 2571 NRVEALKSFQQDTETMVLLLSTQLGAHGLDLSCASHVLLPDPPTDPNVEQQVSRDVYRLL 2630

Query: 152  -----GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                  ++R  + G  R V V   I ++T++E +LQR 
Sbjct: 2631 FLHLQVISRAHRMGALRDVHVEIFILKDTVEETILQRR 2668


>gi|221485471|gb|EEE23752.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 2763

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE--RI- 151
            ++         + +  +L        HGL+L    ++L+         E Q   +  R+ 
Sbjct: 2590 NRVEALKSFQQDTETMVLLLSTQLGAHGLDLSCASHVLLPDPPTDPNVEQQVSRDVYRLL 2649

Query: 152  -----GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                  ++R  + G  R V V   I ++T++E +LQR 
Sbjct: 2650 FLHLQVISRAHRMGALRDVHVEIFILKDTVEETILQRR 2687


>gi|237835405|ref|XP_002367000.1| helicase conserved C-terminal domain-containing protein [Toxoplasma
            gondii ME49]
 gi|211964664|gb|EEA99859.1| helicase conserved C-terminal domain-containing protein [Toxoplasma
            gondii ME49]
          Length = 2744

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE--RI- 151
            ++         + +  +L        HGL+L    ++L+         E Q   +  R+ 
Sbjct: 2571 NRVEALKSFQQDTETMVLLLSTQLGAHGLDLSCASHVLLPDPPTDPNVEQQVSRDVYRLL 2630

Query: 152  -----GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                  ++R  + G  R V V   I ++T++E +LQR 
Sbjct: 2631 FLHLQVISRAHRMGALRDVHVEIFILKDTVEETILQRR 2668


>gi|209963446|ref|YP_002296361.1| helicase, SNF2 family, putative [Rhodospirillum centenum SW]
 gi|209956912|gb|ACI97548.1| helicase, SNF2 family, putative [Rhodospirillum centenum SW]
          Length = 958

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 92  RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           RT D     +  + E G+I +      +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 488 RTADMRSALVDYFREQGRIMIA---TEAGAEGINLQF-CSLVVNYDLPWNPQRIEQRIGR 543

Query: 151 IGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   +  +N  D+ V + L  K  + + +  A
Sbjct: 544 C-----HRYGQKHDVVVVNFLNRKNEADQRVFRLLSEKFQLFEGVFGA 586


>gi|88809325|ref|ZP_01124833.1| possible helicase [Synechococcus sp. WH 7805]
 gi|88786544|gb|EAR17703.1| possible helicase [Synechococcus sp. WH 7805]
          Length = 502

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCT-IQEWNEG 107
           K+ A E ++++  A    +++   F + LA LQ+        GR   ++    +  + +G
Sbjct: 339 KLPAAERLVQQLRAQGESVVLFSSFVAPLALLQQRLGGELLSGRQKPEERQMAVDRFQDG 398

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL A   + G G  L +    +V     W   +  Q  +R       + G    +  
Sbjct: 399 STDLLLATFGAGGLGFTL-HRARQVVLLERPWTPGDVDQAEDRC-----HRLGMDGELMS 452

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++L      D+LV   + +K++  +LL+
Sbjct: 453 HWLQL-GPADQLVDGLVASKASRIELLM 479


>gi|87123312|ref|ZP_01079163.1| possible helicase [Synechococcus sp. RS9917]
 gi|86169032|gb|EAQ70288.1| possible helicase [Synechococcus sp. RS9917]
          Length = 522

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 32/198 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             ++R +   L   + EAF   +      Q+A                  K+ A E +I 
Sbjct: 327 DDYRRRVRAGLVRSDAEAF---ALLTALRQIAAEF---------------KLPAAEQLIR 368

Query: 65  K--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPA 117
              A +  +++   F   L  LQ+         +         +  +  G I LL +   
Sbjct: 369 DCCAESGTVVLFSTFVEPLHLLQQRLGGAVLSGRLRPSERQAVVDRFQAGGIDLLLSTYG 428

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G  L +    ++     W      Q  +R       + G +  +  ++L      D
Sbjct: 429 TGGLGFTL-HRARHIILLERPWTPGAVDQAEDRC-----HRIGMEGELISHWLQL-GVAD 481

Query: 178 ELVLQRLRTKSTIQDLLL 195
           +LV   + +K+   ++LL
Sbjct: 482 QLVDGLVASKAKQIEVLL 499


>gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SSC/2]
          Length = 509

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           Q A G  Y    +      + +   +  I+EK+    +I+ Y+F+ +L  L         
Sbjct: 247 QQAAGLCYV--LRRVVNTDERRAMTVLEILEKS--PRVIIFYNFDYELDILMN------I 296

Query: 94  LDKDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +   + +WN  K          +      +   G N     + ++F+S  +  +  +
Sbjct: 297 AYGEDVEVAQWNGHKHQPVPDTKSWVYLVQYTAGCEGWNC-IKTDTIIFYSQNYSYKVME 355

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   RI           + ++ Y+L +++ ID  + + L  K  
Sbjct: 356 QASGRIDRLNT----PYKDLYYYHLKSRSGIDLAISKALTKKKK 395


>gi|224097394|ref|XP_002334613.1| predicted protein [Populus trichocarpa]
 gi|222873504|gb|EEF10635.1| predicted protein [Populus trichocarpa]
          Length = 51

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +     +   GLN+    +  +   LWW+     Q ++R       +    R V V
Sbjct: 1   MLTSLKAGNLGLNMVAACHE-ILLDLWWNPTTEDQAVDR-----AHRIAQTRPVTV 50


>gi|108797789|ref|YP_637986.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119866881|ref|YP_936833.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|108768208|gb|ABG06930.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119692970|gb|ABL90043.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 1201

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 35/175 (20%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEK---ANAA----PIIVAYHFNSDLARL---------- 84
            D    ++   D K+ AL   +E    AN       ++V   +   L  +          
Sbjct: 643 SDWGHSYEARPDSKLTALIDYLEANTKANGEWLNERVVVFTEYVDTLEWIHGILRQRGYE 702

Query: 85  --QKAFPQGRTLDKDPCTIQ-EWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             + A   G T  +    I+  +N      K+ +L A   + G G++LQ   + LV F +
Sbjct: 703 ADRVAVIDGSTDGEQREVIRARFNTDPSREKLRILLA-TDAAGEGIDLQDYCHRLVNFDI 761

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-----TIDELVLQRLRTK 187
            ++    +Q I RI      + G      + +    +     T D  +L R+  K
Sbjct: 762 PFNPNRLEQRIGRID-----RYGQTHDPEIRHFATDDEKSQLTRDVDLLARVAKK 811


>gi|271969042|ref|YP_003343238.1| helicase domain-containing protein [Streptosporangium roseum DSM
           43021]
 gi|270512217|gb|ACZ90495.1| helicase domain protein [Streptosporangium roseum DSM 43021]
          Length = 941

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 36/214 (16%)

Query: 5   HKFQRELYCDLQGEN-IEAFNSAS------------KTVKCLQLANGAVYYDEEKHWKEV 51
            +  R    DL  E  +E  ++A+             + +  +LA      +  K     
Sbjct: 405 DELGRSSVLDLTDEEGLEGIDAAAGGLTGGDGETSPDSERLKRLARAFAKIEGPK----- 459

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            D K+ AL   ++    +    IV   F      + +   +          +      + 
Sbjct: 460 DDAKLTALIDEVKSLLLDGYDPIVFCRFIPTAEYVAEHLAKALGKKAHVRHVTGQLPPEA 519

Query: 110 PLLFAHPASC-------------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            L                       G+NLQ     +V + L W+   H+Q   R+    Q
Sbjct: 520 RLAAIEELGAEPGRHVLVATDCLSEGVNLQEHFQAVVHYDLAWNPTRHEQREGRVDRFGQ 579

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           R+    RAV +Y L   N ID +VL  L  K   
Sbjct: 580 RK-QTVRAVTMYGL--DNGIDGVVLDVLIRKHRT 610


>gi|254430801|ref|ZP_05044504.1| SWI/SNF family helicase_2 [Cyanobium sp. PCC 7001]
 gi|197625254|gb|EDY37813.1| SWI/SNF family helicase_2 [Cyanobium sp. PCC 7001]
          Length = 528

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
               +      Q+A+               D K+ A   +I    A   P++V   F S 
Sbjct: 348 AEVLAVLTALRQIAS---------------DYKLPAARTLISTLLARGEPVVVFTAFRST 392

Query: 81  LARLQKAFPQGRTLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            A L  A   G  L       +    +  +  G+ PLL A   + G G  L +    +V 
Sbjct: 393 -ASLLHAQLGGVLLTGALPPAQRQGLVDGFQAGRQPLLVATFGTGGLGFTL-HRARHVVL 450

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               W   + +Q  +R       + G    +  ++L      D+LV   + +K+    LL
Sbjct: 451 IERPWTPGDAEQAEDRC-----HRIGMGAPLCCHWLQL-GVADQLVDGLIASKAERIALL 504

Query: 195 LN 196
           L 
Sbjct: 505 LQ 506


>gi|241589875|ref|YP_002979900.1| helicase domain protein [Ralstonia pickettii 12D]
 gi|240868587|gb|ACS66246.1| helicase domain protein [Ralstonia pickettii 12D]
          Length = 1055

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL--ARLQKAFPQ------GRTLDKDPCTIQ-EWNE 106
           I  LE +++      +   Y  N++L    L K          G+T+ +     +  + +
Sbjct: 858 IDKLEELVDLRRRPIMFTGYPGNAELVARHLAKRHIDSVVIHGGKTIKRRNAEFEARFRK 917

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G +P+      S G G N+    ++L      W   +  Q I R              V 
Sbjct: 918 GTVPVALVTYGSIGEGTNIPQCSDVL-LADKSWSARKESQAIARALRDEN----EWDEVK 972

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDL 193
           V++ + +++ID  + Q +  K+   + 
Sbjct: 973 VHHALTEHSIDSYMQQVVSYKADSFNA 999


>gi|134298387|ref|YP_001111883.1| helicase domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051087|gb|ABO49058.1| helicase domain protein [Desulfotomaculum reducens MI-1]
          Length = 942

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 28/211 (13%)

Query: 1   MKQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K    +  + +GE +  A   A      L  AN AV + E +  ++        L
Sbjct: 379 LRSYAKLAESIQHNAKGEALLVALEQALDQATTLGAANKAVIFTESRRTQQ------YLL 432

Query: 60  EVIIEKANAAPIIVAYHFNSD--LARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           E++        I++    NSD    R+ K + Q            T D     I+E+ E 
Sbjct: 433 EILSANGYDGQIVLFNGSNSDPHSKRIFKEWLQRHQGQDIITGSPTADMRAALIEEFRER 492

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +     S   G+NLQ+  +++V + L W+ +  +Q I R       + G K  V V
Sbjct: 493 GT--ILIATESAAEGVNLQF-CSLVVNYDLPWNPQRIEQRIGRC-----HRYGQKYDVVV 544

Query: 168 YYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + + N  D+ V Q L  K  + D +  A
Sbjct: 545 VNFLNKRNAADQRVYQLLAEKFRLFDGVFGA 575


>gi|304310478|ref|YP_003810076.1| helicase/ type iii restriction enzyme [gamma proteobacterium HdN1]
 gi|301796211|emb|CBL44417.1| helicase/ type iii restriction enzyme [gamma proteobacterium HdN1]
          Length = 973

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T D     ++ + E     +     +   G+NLQ+  ++++ + L W+ +  +Q I R 
Sbjct: 498 KTADTRAALVEHFKERGT--VMIATEAGAEGINLQF-CSLVINYDLPWNPQRIEQRIGRC 554

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K  V V   + + N  D  V + L  K  + D +  A
Sbjct: 555 -----HRYGQKYDVVVVNFVDRSNEADARVYELLEQKFQLFDGVFGA 596


>gi|148262671|ref|YP_001229377.1| helicase domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396171|gb|ABQ24804.1| helicase domain protein [Geobacter uraniireducens Rf4]
          Length = 955

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++ D+    I+ +       +     +   G+NLQ+  +++V + L W+ +  +
Sbjct: 482 GRISGSKSADRRNALIEHF--RDHASIMIATEAAAEGVNLQF-CSLVVNYDLPWNPQRIE 538

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G +  V V   +  +N  D+ V + L  K  +   +  A
Sbjct: 539 QRIGRC-----HRYGQQHDVVVINFLNERNEADQRVYELLTAKFNLFSGVFGA 586


>gi|224001070|ref|XP_002290207.1| Hypothetical protein THAPSDRAFT_262487 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973629|gb|EED91959.1| Hypothetical protein THAPSDRAFT_262487 [Thalassiosira pseudonana
           CCMP1335]
          Length = 466

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF-SLWWDLEEHQQMIERI 151
              +    +    +  + +      + G  + L       V+F  L+W      Q  +R 
Sbjct: 372 PKTRQEQILTFQTDPTVRIAMLGITAAGVAVTLTASST--VWFAELFWTPAIMIQAEDRC 429

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                 + G +  V   Y +A++T+DE++ + +  K
Sbjct: 430 -----HRIGQQARVRCLYFVAKSTLDEVLWKLIEKK 460


>gi|331090153|ref|ZP_08339041.1| hypothetical protein HMPREF1025_02624 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402099|gb|EGG81671.1| hypothetical protein HMPREF1025_02624 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 872

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI- 171
                +   GLNLQ+  N ++ + L W+  + +Q I R       + G    V    L+ 
Sbjct: 493 LICTDAGSEGLNLQF-CNTVINYDLPWNPMKIEQRIGRC-----HRYGQDHDVVAINLLN 546

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            QN  D+ V   L  K  + + +  A
Sbjct: 547 TQNAADQRVYDILSKKFELFEGVFGA 572


>gi|303280403|ref|XP_003059494.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459330|gb|EEH56626.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1776

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L        +GLNL    + ++      D     Q ++R+      + G  +   V+  
Sbjct: 1671 VLLMPLRRGANGLNLTEAQH-VILLEPVLDPGAEAQAMKRVD-----RIGQTKPTCVHRF 1724

Query: 171  IAQNTIDELVLQRLRTKST 189
            +   T++E V +  R +  
Sbjct: 1725 LLSGTVEENVHELSRRRRE 1743


>gi|227515541|ref|ZP_03945590.1| SNF2 family DNA/RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227086154|gb|EEI21466.1| SNF2 family DNA/RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 630

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
           +V   K +    +I+K  +    ++V   F   + ++                       
Sbjct: 444 KVESPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNDMGIKTTLVYGATPKQDR 503

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI      
Sbjct: 504 EGMINNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLP 563

Query: 158 QAGFKRAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
              + R    YYL+ +        ID  V ++L+ K  +   +++A+  + +
Sbjct: 564 ANQYTR---YYYLMTKGDVAHMGFIDSTVYKKLKDKEKV---MIDAIDGQLL 609


>gi|86158946|ref|YP_465731.1| SNF2-related helicase-like [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775457|gb|ABC82294.1| SNF2-related Helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 915

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 69  APIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +V   F      L++                   +K    ++E+   +  +L     
Sbjct: 438 EKAVVFTEFRRTQDYLRRLLEAKGYTVTCLSGDVSGTEKRAALVEEF-RDRTQILLM-TE 495

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTI 176
           +   GLNLQ+  N++V + L W+ +  +Q I R       + G +R V V   + + N  
Sbjct: 496 AGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC-----HRYGQQRDVLVLNFLNRSNAA 549

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D  +   L  K  + D + 
Sbjct: 550 DARLFDLLSQKLALFDGVF 568


>gi|312964340|ref|ZP_07778639.1| putative helicase [Escherichia coli 2362-75]
 gi|312290970|gb|EFR18845.1| putative helicase [Escherichia coli 2362-75]
          Length = 1868

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1427 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSN 1485

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +A     V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 1486 RA----IVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 1526


>gi|323485197|ref|ZP_08090548.1| hypothetical protein HMPREF9474_02299 [Clostridium symbiosum
           WAL-14163]
 gi|323401516|gb|EGA93863.1| hypothetical protein HMPREF9474_02299 [Clostridium symbiosum
           WAL-14163]
          Length = 404

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
           A G  Y    +        +  AL  I+EK      I+ Y+F+ +L  L++ F      +
Sbjct: 251 AAGLCYV--WRKIVNTDQSRQIALLEIVEKH--PKAIIFYNFDYELDLLKEIFSGYEVGE 306

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +    Q        +      +   G N     + ++FFS  +  +   Q   RI    
Sbjct: 307 WNGHKHQPVPTSDTWVYLVQYNAGAEGWNC-ITTDTIIFFSQNYSYKIMAQSAGRIDRMN 365

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                    ++ Y+L +++ ID  + + L+ K T
Sbjct: 366 TPYT----DLYYYHLKSRSGIDLAISKALKDKRT 395


>gi|320527419|ref|ZP_08028600.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320132132|gb|EFW24681.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 872

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  +I        +   GLNLQ+  N ++ + L W+  + +Q I R       + G +  
Sbjct: 488 NNARI---LICTDAGSEGLNLQF-CNTVINYDLPWNPMKIEQRIGRC-----HRYGQEHD 538

Query: 165 VFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
           V    L+  QN  D+ V   L +K  + + +  A
Sbjct: 539 VVAINLLNTQNAADQRVYDILSSKFELFEGVFGA 572


>gi|295102472|emb|CBL00017.1| DNA methylase [Faecalibacterium prausnitzii L2-6]
          Length = 1989

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T  K      +   GK+ +L    A  G G N+Q     +    + W   +  Q   R
Sbjct: 1605 ADTEGKKADLFSKVRSGKVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQRNGR 1664

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ    + V+VY  + + T D  + Q L  K      ++ +
Sbjct: 1665 II----RQGNKNKQVYVYNYVTEGTFDAYLWQTLENKQKFISQIMTS 1707


>gi|219871484|ref|YP_002475859.1| superfamily II DNA/RNA helicase, SNF2 family, ATP-dependent
           [Haemophilus parasuis SH0165]
 gi|219691688|gb|ACL32911.1| superfamily II DNA/RNA helicase, SNF2 family, ATP-dependent
           [Haemophilus parasuis SH0165]
          Length = 950

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   ++
Sbjct: 504 MIATEAAAEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLS 557

Query: 173 Q-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q N  D+ VL+ L  K  + D +  A
Sbjct: 558 QRNEADQRVLELLSEKFKLFDGVFGA 583


>gi|296416157|ref|XP_002837747.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633630|emb|CAZ81938.1| unnamed protein product [Tuber melanosporum]
          Length = 2127

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW 104
            K++ +  +I+K       I+V   F   + ++ +   + +                +Q++
Sbjct: 1970 KLEKMMHLIQKLIPVDEKILVFVQFTDLMEKVAQVLKEYKIGFLQIKGSAAAQSKALQQF 2029

Query: 105  NE----GKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQ 158
             E      I +L  +       G NL    N  +F S      +++ +  E   + R R+
Sbjct: 2030 QESAEKDNIKVLLLNVMDESASGANLTN-ANHAIFLSPLLTTTDYEYRSCETQAIGRVRR 2088

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQ 182
             G  + V V+  + +N+ID  + Q
Sbjct: 2089 YGQTKKVHVWRFLTENSIDVEIFQ 2112


>gi|119855183|ref|YP_935786.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|119697900|gb|ABL94971.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 976

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +  T            +G++ +L       G G N+Q   + L      W     +Q   
Sbjct: 634 EATTAKAREALFAACRDGRVAVLLGSTPKVGIGTNVQNRLHSLHHVDPTWTAAAWEQRNG 693

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKET 202
           RI    QR         ++  +A+ T D  +   +  K+     L  ++   +E 
Sbjct: 694 RI----QRNGNQHATAEIHSHVARGTFDAFMFGTVERKARGFAQLYRMDGQAREI 744


>gi|159898481|ref|YP_001544728.1| helicase domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891520|gb|ABX04600.1| helicase domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 968

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ   N ++ + L W+    +Q   R+      + G    V    L+    N IDE 
Sbjct: 565 GINLQEAFNAVIHYDLPWNPNRLEQREGRVD-----RYGQPAPVVRMALVRGEDNPIDEA 619

Query: 180 VLQRLRTKSTI 190
           V++ L  K+  
Sbjct: 620 VMRVLLRKAVT 630


>gi|313232505|emb|CBY19175.1| unnamed protein product [Oikopleura dioica]
          Length = 398

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I   R  + G  R V +Y  IA++TI+E +L++   K  + ++ + 
Sbjct: 97  IHFCRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIE 142


>gi|197121738|ref|YP_002133689.1| helicase [Anaeromyxobacter sp. K]
 gi|196171587|gb|ACG72560.1| helicase domain protein [Anaeromyxobacter sp. K]
          Length = 916

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 69  APIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +V   F      L++                   +K    ++E+   +  +L     
Sbjct: 438 EKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAALVEEF-RDRTQILLM-TE 495

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTI 176
           +   GLNLQ+  N++V + L W+ +  +Q I R       + G +R V V   + + N  
Sbjct: 496 AGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC-----HRYGQQRDVLVLNFLNRSNAA 549

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D  +   L  K  + D + 
Sbjct: 550 DARLFDLLSQKLALFDGVF 568


>gi|315171700|gb|EFU15717.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 2159

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     ++   G I +L       G G N+Q            W   +  Q   
Sbjct: 1804 DAKTDLQKDTLFEKMRAGDIRVLLGSTQKVGTGTNVQNKLIAAHHIDCPWKPSDLTQREG 1863

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ      V +Y  I + T D  + Q    K T    ++  
Sbjct: 1864 RIL----RQGNENEEVAIYRYITKGTFDSYLWQIQEQKLTYISQVMTG 1907


>gi|168051804|ref|XP_001778343.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670320|gb|EDQ56891.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 921

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    +  +N+             + G GLNL  GGN LV F   W+    
Sbjct: 558 RLDGTTSIGKRQKLVSRFNDPNQNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPATD 616

Query: 145 QQMIERI 151
           +Q+ +R 
Sbjct: 617 KQVFQRQ 623


>gi|256618605|ref|ZP_05475451.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598132|gb|EEU17308.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 2159

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     ++   G I +L       G G N+Q            W   +  Q   
Sbjct: 1804 DAKTDLQKDTLFEKMRAGDIRVLLGSTQKVGTGTNVQNKLIAAHHIDCPWKPSDLTQREG 1863

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ      V +Y  I + T D  + Q    K T    ++  
Sbjct: 1864 RIL----RQGNENEEVAIYRYITKGTFDSYLWQIQEQKLTYISQVMTG 1907


>gi|87200188|ref|YP_497445.1| helicase-like [Novosphingobium aromaticivorans DSM 12444]
 gi|87135869|gb|ABD26611.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 922

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ  G  L+   L W+    +Q I RI    Q     +R V +  L+   TID
Sbjct: 774 AACEGLNLQTLG-TLINVDLPWNPSRLEQRIGRIKRYGQ----QRREVDMANLVYSGTID 828

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E V QRL  +   +  +L +L
Sbjct: 829 ERVYQRLSERMQDRYDILGSL 849


>gi|159472472|ref|XP_001694375.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158277038|gb|EDP02808.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 837

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 28/148 (18%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
              K++ ++ + ++  A    +I+   F   L  L++ +  GR L            +  
Sbjct: 434 ASGKLQLVDAMAQRLKAAGHRLIIFSQFTRTLDLLEE-WLNGRGLGYMRIDGTVSGSERQ 492

Query: 99  CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER------ 150
             I  +N+             + G G+NL    + ++ F   W+     Q+  +      
Sbjct: 493 RRIDRFNQQPDAYFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPHNDLQVSRKKMMLEH 551

Query: 151 --IGVTRQRQAGFKRAVF---VYYLIAQ 173
             + +        +       VY ++ +
Sbjct: 552 LVLWLIAVHDLDQRDLCVPAWVYRIVCE 579


>gi|302824252|ref|XP_002993771.1| hypothetical protein SELMODRAFT_431801 [Selaginella moellendorffii]
 gi|300138421|gb|EFJ05190.1| hypothetical protein SELMODRAFT_431801 [Selaginella moellendorffii]
          Length = 412

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 26  ASKTVKCLQLANGAV--------YYDEEKHWKEVHDEKIKALEVI----------IEKAN 67
            S  ++  Q+ +             D   +  E   +  +AL+ +           E+ +
Sbjct: 263 LSMLLRLRQMCDHPALLKSEDLFQGDNLDNDDEDQKQMRQALKKLQLEAQEKQHDFERDD 322

Query: 68  --AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
                 +V   + S L  ++                  + K    I  +N + ++ +L  
Sbjct: 323 SLGEKSLVFSQWTSMLDLIELELECSGIKFARIDGSMNMTKREAAIGRFNKDPEVMVLLL 382

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWD 140
              + G GLNL    + ++   +WW+
Sbjct: 383 SLRAAGCGLNL-VAASRVLLIDMWWN 407


>gi|226292283|gb|EEH47703.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb18]
          Length = 2038

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHF----NSDLARLQKA---FPQGRT 93
             + W+     K   L  ++   +  P    +++   F     +  A L KA         
Sbjct: 1840 NEQWQVYGGTKFLELIRLVRNTDKIPADEHVLLFIQFPDLMKAASAALGKANIPHLMIPV 1899

Query: 94   LDK-DPCTIQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             D+     I E+ +G    K  +L  H  +    GLNLQ   N ++FF   +   ++   
Sbjct: 1900 NDRMASSKITEFQKGTEKVKSKVLILHLGNVSASGLNLQN-ANHVIFFHPLFAKSQYDYT 1958

Query: 148  IE-RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT----KSTIQ 191
                  + R R+ G ++ V +Y  +A  TI+  + +  R     K   Q
Sbjct: 1959 SGMAQAIGRSRRYGQQKHVHIYQFLALKTIEVNIFEHRRRERLVKRDGQ 2007


>gi|225681023|gb|EEH19307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 2092

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHF----NSDLARLQKA---FPQGRT 93
             + W+     K   L  ++   +  P    +++   F     +  A L KA         
Sbjct: 1894 NEQWQVYGGTKFLELIRLVRNTDKIPADEHVLLFIQFPDLMKAASAALGKANIPHLMIPV 1953

Query: 94   LDK-DPCTIQEWNEG----KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             D+     I E+ +G    K  +L  H  +    GLNLQ   N ++FF   +   ++   
Sbjct: 1954 NDRMASSKITEFQKGTEKVKSKVLILHLGNVSASGLNLQN-ANHVIFFHPLFAKSQYDYT 2012

Query: 148  IE-RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT----KSTIQ 191
                  + R R+ G ++ V +Y  +A  TI+  + +  R     K   Q
Sbjct: 2013 SGMAQAIGRSRRYGQQKHVHIYQFLALKTIEVNIFEHRRRERLVKRDGQ 2061


>gi|220916532|ref|YP_002491836.1| helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954386|gb|ACL64770.1| helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 915

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 69  APIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +V   F      L++                   +K    ++E+   +  +L     
Sbjct: 438 EKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAALVEEF-RDRTQILLM-TE 495

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTI 176
           +   GLNLQ+  N++V + L W+ +  +Q I R       + G +R V V   + + N  
Sbjct: 496 AGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC-----HRYGQQRDVLVLNFLNRSNAA 549

Query: 177 DELVLQRLRTKSTIQDLLL 195
           D  +   L  K  + D + 
Sbjct: 550 DARLFDLLSQKLALFDGVF 568


>gi|149199530|ref|ZP_01876564.1| putative ATP-dependent helicase [Lentisphaera araneosa HTCC2155]
 gi|149137326|gb|EDM25745.1| putative ATP-dependent helicase [Lentisphaera araneosa HTCC2155]
          Length = 956

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           + F  G+T  +    I ++ +    + +     +   G+NL +  N +  + + W L   
Sbjct: 487 QVFHGGQTDTEQQAIIDDFGKKDSDIRVLITSDAGSQGVNLHFYCNRMFNYDIPWSLITL 546

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKST 189
           +Q   RI      + G  +  ++YY+IA++ +D       +++ L  K  
Sbjct: 547 EQRNGRID-----RYGQSKTPYIYYMIAKSDLDGLKTDLHIIENLTKKEE 591


>gi|313667221|ref|YP_004049622.1| helicase domain protein [Oceanithermus profundus DSM 14977]
 gi|313153852|gb|ADR37702.1| helicase domain protein [Oceanithermus profundus DSM 14977]
          Length = 695

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSD------LARL--------QKAFPQGRTLDKDP 98
           K + L  ++  E+A    +IV      +      L R+        +  +    +  K  
Sbjct: 436 KEEELVELVRQERARGRRVIVFVQNTGERNLAGRLERILTTSGFRARALYSSTASARKRE 495

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             IQ+     + +L  HP     GL+L      LV++ +   +   +Q   R       +
Sbjct: 496 AWIQKAVREGLDVLILHPRLVQTGLDLIDFP-TLVYYQVEPSVYVLRQAARRSW-----R 549

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G K  V V Y + + T+    L  L  K+     +
Sbjct: 550 IGQKHPVRVVYFVYRATLQTKALGLLAAKAQASHAI 585


>gi|157158933|ref|YP_001465831.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300938291|ref|ZP_07153056.1| protein, SNF2 family [Escherichia coli MS 21-1]
 gi|157080963|gb|ABV20671.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300456746|gb|EFK20239.1| protein, SNF2 family [Escherichia coli MS 21-1]
          Length = 963

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +DK    I  + +  +I +      +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 486 IDKRSALIDHFKDHAEIMIA---TEAAAEGVNLQF-CSLLINYDLPWNPQRIEQRIGRC- 540

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + Q N  D+ VL+ L  K ++ D +  A
Sbjct: 541 ----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|323136362|ref|ZP_08071444.1| hypothetical protein Met49242DRAFT_0831 [Methylocystis sp. ATCC
           49242]
 gi|322398436|gb|EFY00956.1| hypothetical protein Met49242DRAFT_0831 [Methylocystis sp. ATCC
           49242]
          Length = 459

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 75/210 (35%), Gaps = 28/210 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----EKHWKEVHDE--- 54
           + Y   + E   +L+   ++        ++C Q+     Y+ +          + +    
Sbjct: 240 RLYDTLKDEAILELERFFVDGTLPGVAFIRCRQILEHPNYFPDLTMPGTTVDIIPERRPG 299

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARL----QKAFPQGRTLD------KDPCTIQ 102
           K++ L++  E   AN  P++V         ++    ++   +   L+      +     +
Sbjct: 300 KLELLDLHFENHAANKQPLVVFASLIPQERQILELSREHGLRFEILNGEVSHAESSQISK 359

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGG----NILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  G +  L   P     G N Q+ G    +  ++ SL +      Q   R     +R+
Sbjct: 360 AFETGALDGLVCSPLVADAGFNWQFSGGKEVSHAIYASLDFRDTSFVQSYGRFLR-GKRE 418

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           +  +  +  Y     N++D+ +   +  KS
Sbjct: 419 SALRLTILKYR----NSLDDRIAYLVNKKS 444


>gi|312966020|ref|ZP_07780246.1| putative helicase [Escherichia coli 2362-75]
 gi|312289263|gb|EFR17157.1| putative helicase [Escherichia coli 2362-75]
          Length = 963

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +DK    I  + +  +I +      +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 486 IDKRSALIDHFKDHAEIMIA---TEAAAEGVNLQF-CSLLINYDLPWNPQRIEQRIGRC- 540

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + Q N  D+ VL+ L  K ++ D +  A
Sbjct: 541 ----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|218297000|ref|ZP_03497686.1| helicase domain protein [Thermus aquaticus Y51MC23]
 gi|218242703|gb|EED09239.1| helicase domain protein [Thermus aquaticus Y51MC23]
          Length = 923

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ G + +V + L W+    +Q   R+    Q++    + V V Y    N +DE V+
Sbjct: 547 GVNLQEGFSAVVHYDLPWNPNRLEQREGRVDRYGQKRP---KVVAVRYRGLDNPVDEKVV 603

Query: 182 QRLRTKST 189
           + L  K+ 
Sbjct: 604 EVLLKKAE 611


>gi|26351187|dbj|BAC39230.1| unnamed protein product [Mus musculus]
 gi|26351189|dbj|BAC39231.1| unnamed protein product [Mus musculus]
          Length = 577

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEW---- 104
             K+  L  ++E+        +V       L  +++       +TL  D      W    
Sbjct: 462 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREK 521

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                    +  +        G GL L      +V F   W+     Q ++R+  
Sbjct: 522 RIQLFQQNKEYSVFLLTTQVGGVGLTLT-AATRVVIFDPSWNPATDAQAVDRVYR 575


>gi|309799880|ref|ZP_07694085.1| helicase [Streptococcus infantis SK1302]
 gi|308116470|gb|EFO53941.1| helicase [Streptococcus infantis SK1302]
          Length = 869

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLNLQ+  N ++ + L W+ ++ +Q I R       + G K  V    L+
Sbjct: 488 VLIVTDAGSEGLNLQF-CNTVINYDLPWNPQKIEQRIGRC-----HRYGQKYDVVAINLL 541

Query: 172 -AQNTIDELVLQRLRTKSTIQDLLLNA 197
              N  D  V + L  K  + D +  A
Sbjct: 542 NTGNEADRRVYEILSKKFELFDGIFGA 568


>gi|293476568|ref|ZP_06664976.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
 gi|291321021|gb|EFE60463.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
          Length = 963

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +DK    I  + +  +I +      +   G+NLQ+  ++L+ + L W+ +  +Q I R  
Sbjct: 486 IDKRSALIDHFKDHAEIMIA---TEAAAEGVNLQF-CSLLINYDLPWNPQRIEQRIGRC- 540

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + Q N  D+ VL+ L  K ++ D +  A
Sbjct: 541 ----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|46127691|ref|XP_388399.1| hypothetical protein FG08223.1 [Gibberella zeae PH-1]
          Length = 873

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L L    N++      W+     Q I R+      + G  R V VY  I   ++++ VL+
Sbjct: 770 LTLTE-ANMVHIVEPQWNPTIEDQAIARVV-----RMGQTRPVTVYRYIMNESVEQSVLK 823

Query: 183 RLRTKSTI 190
             + K+ I
Sbjct: 824 LQQRKTQI 831


>gi|47225443|emb|CAG11926.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2182

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 23/124 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
                 QL+       +       + + +  L+ +        + + Y F     RL   
Sbjct: 799 LLGAIRQLS-----PSDRVVVVSNYTKTLDLLQDLC-------VGLGYTF----CRLDGH 842

Query: 88  FPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            P G+        +  +N    +  L      + G GLNL  G + LV + + W+     
Sbjct: 843 MPTGQ----RQRLVDSFNSPFSQNFLFLLSSKAGGLGLNL-VGASHLVLYDIDWNPANDI 897

Query: 146 QMIE 149
           Q+  
Sbjct: 898 QVKH 901


>gi|303241343|ref|ZP_07327847.1| helicase domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591076|gb|EFL60820.1| helicase domain protein [Acetivibrio cellulolyticus CD2]
          Length = 939

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++++   + P+ +         G+NL Y  + L+ F + W L   QQ   RI   
Sbjct: 483 EQQKVVEDFGRVEAPVRILVASDVASQGINLHYLSHRLIHFDIPWSLMVFQQRNGRIDRY 542

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q +    R + +     +   D  V++ L  K  
Sbjct: 543 GQHEKPDIRYMTINSKNYKVKGDMRVIEILVKKEE 577


>gi|87124662|ref|ZP_01080510.1| SNF2-related Helicase [Synechococcus sp. RS9917]
 gi|86167541|gb|EAQ68800.1| SNF2-related Helicase [Synechococcus sp. RS9917]
          Length = 1113

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ     L+ F + W+  + +Q   RI     R+      V+ +Y + 
Sbjct: 596 LIATDAAREGVNLQNHCKHLIHFDIPWNPSKLEQRNGRID----RKLQQAPQVWCHYFLL 651

Query: 173 QNTIDELVLQRLRTKSTI 190
           ++  ++ V+  L  K+ +
Sbjct: 652 EDRPEDRVMDVLVKKTEV 669


>gi|220674521|emb|CAR69082.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae ATCC 700669]
          Length = 2088

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + Q+   +  + 
Sbjct: 1708 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQRASVKAVMV 1767

Query: 155  RQ------------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+            RQ    + V +Y+ I + + D  +      K
Sbjct: 1768 RRWVLSLQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENK 1812


>gi|324571333|gb|ADY49918.1| Transcription activator BRG1 [Ascaris suum]
          Length = 71

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 11/75 (14%)

Query: 93  TLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            +      +  W        +  +      + G GLNLQ   + ++ F   W+  +  Q 
Sbjct: 2   EVQSRTNVVNFWRCTMRLNSEYFIFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQA 60

Query: 148 IERIGVTRQRQAGFK 162
                  R  + G  
Sbjct: 61  -----QDRAHRIGQS 70


>gi|323933991|gb|EGB30458.1| hypothetical protein ERCG_04599 [Escherichia coli E1520]
          Length = 952

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                ++ EG+ P++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 518 EKIAADFQEGRTPIIICN-KKAEVGINLHRGTTDIHHLTLPWTPASVAQRNGRGARVGSN 576

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +A    +V V+Y   + + DE  L+ L+ K+     +L + K E 
Sbjct: 577 RA----SVRVHYYCGKGSFDEYRLKTLKRKAGWISDILRSDKSEM 617


>gi|145609289|ref|XP_367576.2| hypothetical protein MGG_07487 [Magnaporthe oryzae 70-15]
 gi|145016677|gb|EDK01107.1| hypothetical protein MGG_07487 [Magnaporthe oryzae 70-15]
          Length = 1514

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  I+   +      L  AF + +     + +     +   E  I   F H  +   GL
Sbjct: 1293 GAKSIIFSQYTGFFGVLSAAFTKYQIGFSSIGEHNGIERFKQEAGIECFFLHARAQSSGL 1352

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    N ++      +     Q I R+      + G K+   V+  + + T++  +   
Sbjct: 1353 NL-VNANHVILCEPLLNTALELQAIARVD-----RIGQKQDTTVWLYMVEGTVEPTIYNL 1406

Query: 184  LRTKSTIQDLL--LNALKKE 201
                 ++Q  L  ++ + KE
Sbjct: 1407 -----SVQRRLEHMDRVMKE 1421


>gi|313124725|ref|YP_004034984.1| hypothetical protein LDBND_1992 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281288|gb|ADQ62007.1| Hypothetical protein LDBND_1992 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 878

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI- 171
                +   GLNLQ+  N ++ + L W+  + +Q I R       + G +  V    L+ 
Sbjct: 498 LICTDAGSEGLNLQF-CNTVINYDLPWNPMKIEQRIGRC-----HRYGQQNDVVAINLLN 551

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            QN  D+ V + L  K  + + +  A
Sbjct: 552 TQNEADKRVYEILSEKFKLFESVFGA 577


>gi|299471834|emb|CBN77004.1| chromatin remodeling complex subunit [Ectocarpus siliculosus]
          Length = 1297

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 43/187 (22%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K  K   +  I+ L  I  +      +V  H  + L RLQ+AF    T            
Sbjct: 10  KKVKSASEWVIEKL--IASEETLTKFVVFAHHKTVLDRLQEAFEVQGTRGNTCPFTPRAA 67

Query: 95  -DKDPCTIQEWN----EGKIP------------------LLFAHPASCGHGLNLQYGGNI 131
            D D  ++  +     +G +P                  +L     + G GL+     N 
Sbjct: 68  NDSDDASVGAFTCLRIDGSVPTALRASRLSEFNTNERCRVLVVSITAGGQGLDFTAASN- 126

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTKSTI 190
           +VF  L       +Q  +R+      +   +++V VY  ++   + D+     L  K T 
Sbjct: 127 VVFVELPESPAWLRQAEDRL-----HRRRQEKSVNVYLTVLPTGSHDDTRWLSLSEKLTT 181

Query: 191 QDLLLNA 197
           Q  ++N 
Sbjct: 182 QTSVMNG 188


>gi|303285868|ref|XP_003062224.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456635|gb|EEH53936.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 625

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWN-EGKIPLLF 113
           K+    +++   F   L  L+              G T   D    I  +N +G+  +  
Sbjct: 534 KSEGKKVLIFSQFTIVLDILEDYLGMMKYEYERLDGSTSQADRQAGIDRFNQDGQGFVYL 593

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + G G+ L    +  + +   W+ +   Q
Sbjct: 594 LSTRAGGMGITLT-AADTAIIYDSDWNPQNDLQ 625


>gi|30250238|ref|NP_842308.1| Snf2/Rad54 family helicase [Nitrosomonas europaea ATCC 19718]
 gi|30181033|emb|CAD86223.1| possible helicase (Snf2/Rad54 family) [Nitrosomonas europaea ATCC
           19718]
          Length = 965

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T D     ++ + E     +     +   G+NLQ+  ++++ + L W+ +  +Q
Sbjct: 482 RITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSLVINYDLPWNPQRIEQ 538

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G K  V V   + + N  D  V Q L  K  + + +  A
Sbjct: 539 RIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYQLLSQKFKLFEGVFGA 585


>gi|46108188|ref|XP_381152.1| hypothetical protein FG00976.1 [Gibberella zeae PH-1]
          Length = 1107

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 22/184 (11%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHDEKIKALEVII 63
            +RE         + +            LA      +++      +   D K +A E I+
Sbjct: 804 MERERMLASDDPEMNSQT----------LAGNTKLGNDQHPSIRARSTKDAKPEA-EAIL 852

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH-PASCGHG 122
           + A   P+  A   ++   +L           +D   +  +    I    A        G
Sbjct: 853 DGALG-PLEEARITSTASIKLSYLIDNILRYQEDEKILIFYENDNIAWYLAGMLEVAAFG 911

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L+++   + + F S   + +   Q I R      R+   K+AVFV  L+ +++I+E++L+
Sbjct: 912 LDMRE-ASRIFFISPVLNPQVEAQAIGR-----ARRISQKKAVFVETLVLKDSIEEVILE 965

Query: 183 RLRT 186
           R + 
Sbjct: 966 RKQH 969


>gi|154498713|ref|ZP_02037091.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
 gi|150272253|gb|EDM99451.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
          Length = 943

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +  D+    +  +       +     +   GLNLQ+  +++V + L W+ +  +
Sbjct: 472 GRLSGIKAADRRAALVDYF--RDTAEVMIATEAAAEGLNLQF-CSLVVNYDLPWNPQRIE 528

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   I Q N  D  V   L  K  + D +  A
Sbjct: 529 QRIGRC-----HRYGQKSDVVVVNFINQRNFADMRVFSLLSEKFKLFDDVFGA 576


>gi|331091942|ref|ZP_08340774.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330402841|gb|EGG82408.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 2591

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T  K      +   G++ +L       G G N+Q     L      W   + +Q   
Sbjct: 2184 EAGTETKKAELFAKVRSGQVRVLLGSTPKLGAGTNIQDRLIALHHLDCPWKPADLEQQEG 2243

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2244 RIL----RQGNQNKKVKIFRYVTENTFDAYMWQILENKQKFISQIMTS 2287


>gi|56475781|ref|YP_157370.1| SNF2 family helicase [Aromatoleum aromaticum EbN1]
 gi|56311824|emb|CAI06469.1| helicase (Snf2 family) [Aromatoleum aromaticum EbN1]
          Length = 965

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ+  +++V + L W+ +  +Q I R       + G +  V V   + 
Sbjct: 509 LIATEAAAEGVNLQF-CSLVVNYDLPWNPQRVEQRIGRC-----HRYGQRFDVVVINFLN 562

Query: 173 Q-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q N  D  VL+ L+ K  + D +  A
Sbjct: 563 QRNEADRRVLELLQDKFRLFDGVFGA 588


>gi|211956368|ref|YP_002302437.1| transcription termination factor NPH-I [Deerpox virus W-1170-84]
 gi|115503163|gb|ABI99081.1| transcription termination factor NPH-I [Deerpox virus W-1170-84]
          Length = 635

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 18/149 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GK-IPLLFAHPASCGH 121
              I++ Y    +++ ++ +    RT D     + ++NE     G+ I +      S G 
Sbjct: 395 GISILLLYFSIFEISSIEFS---SRTKDTRVKMVSKFNEECNTNGEHIKVCVFSL-SGGE 450

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----N 174
           G++     +I +   + W+    +Q+I R             +R V V+++IA+     +
Sbjct: 451 GISFFSINDIFIL-DMTWNEASLKQIIGRAIRLNSHIFTPEERRYVNVHFIIARLSNGDS 509

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T+DE +L  +RTKS     L   LK+ +I
Sbjct: 510 TVDEDLLDIIRTKSKEFTQLFKVLKESSI 538


>gi|307694074|ref|ZP_07636311.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 2113

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 26/171 (15%)

Query: 30   VKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQK 86
             K  QL          +  +    D K K +      AN  P   +   H     A+ + 
Sbjct: 1691 DKLTQLVFCDLSTPKNDGTFNVYDDVKTKLI------ANGVPAEEVAFIHDADTEAKKKD 1744

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             F + RT             G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 1745 LFAKVRT-------------GQVRVLLGSTQKMGAGTNVQDKLVAVHHLDVGWRPSDMTQ 1791

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI     RQ    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 1792 RNGRII----RQGNRNKEVQVYQYVTEETFDAYLYQTLENKQKFISQIMTS 1838


>gi|226947213|ref|YP_002802286.1| helicase, Snf2 family [Azotobacter vinelandii DJ]
 gi|226722140|gb|ACO81311.1| helicase, Snf2 family [Azotobacter vinelandii DJ]
          Length = 929

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T D     ++ + E     +     +   G+NLQ+  ++++ + L W+ +  +Q
Sbjct: 446 RITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSLVINYDLPWNPQRIEQ 502

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            I R       + G K  V V   + + N  D  V Q L  K  + + +  A
Sbjct: 503 RIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYQLLSQKFKLFEGVFGA 549


>gi|296090335|emb|CBI40154.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPA 117
              +++   F   +  +++                   +K        ++     L     
Sbjct: 987  EKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLMD-G 1045

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S   GL+L +  + +      WD    +Q+I R       + G  R + V  L  + TI+
Sbjct: 1046 SAALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPIRVETLAMRGTIE 1099

Query: 178  ELVLQRLRTKST 189
            E +L+ L+    
Sbjct: 1100 EQMLEFLQDADE 1111


>gi|225465878|ref|XP_002266009.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1397

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPA 117
              +++   F   +  +++                   +K        ++     L     
Sbjct: 1229 EKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLMD-G 1287

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S   GL+L +  + +      WD    +Q+I R       + G  R + V  L  + TI+
Sbjct: 1288 SAALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPIRVETLAMRGTIE 1341

Query: 178  ELVLQRLRTKST 189
            E +L+ L+    
Sbjct: 1342 EQMLEFLQDADE 1353


>gi|147863931|emb|CAN81112.1| hypothetical protein VITISV_032626 [Vitis vinifera]
          Length = 1208

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPA 117
              +++   F   +  +++                   +K        ++     L     
Sbjct: 1040 EKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLMD-G 1098

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            S   GL+L +  + +      WD    +Q+I R       + G  R + V  L  + TI+
Sbjct: 1099 SAALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPIRVETLAMRGTIE 1152

Query: 178  ELVLQRLRTKST 189
            E +L+ L+    
Sbjct: 1153 EQMLEFLQDADE 1164


>gi|113477685|ref|YP_723746.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168733|gb|ABG53273.1| helicase-like [Trichodesmium erythraeum IMS101]
          Length = 1138

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 31/200 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + ++    +     + + N  +   +  QL    +Y   E   +E+ + K+  L+ II  
Sbjct: 427 EQEQNKIRESLESVVASVNPGNLQDEIAQLTR-LIYLALELEKREI-ESKLVKLKEIITS 484

Query: 66  AN-----AAPIIVAYHFNSDLARLQKAFP----------------QGRTLDKDPCTIQEW 104
                     +++       L  L                        T        +E+
Sbjct: 485 KGIFQDRKMKLLIFTEHKDTLDYLVGKLRGWKLSVTQIHGGMKIGDRDTPQTRIYAEREF 544

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E    +L A   + G G+NLQ+   + + + + W+    +Q + R       + G ++ 
Sbjct: 545 RE-DAQILVA-TEAAGEGINLQF-CWLTINYDIPWNPVRLEQRMGR-----THRYGQEKD 596

Query: 165 VFVYYLIAQNTIDELVLQRL 184
             ++  +A NT +  VL +L
Sbjct: 597 CLIFNFVATNTREGRVLWKL 616


>gi|225155638|ref|ZP_03724127.1| DNA or RNA helicase of superfamily II-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803611|gb|EEG21845.1| DNA or RNA helicase of superfamily II-like protein [Opitutaceae
           bacterium TAV2]
          Length = 541

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 27  SKTVKCLQLANGAVY--YDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA 82
           ++  K  Q+A G  Y   +  +    +   K   +  ++    A    ++V   F  + A
Sbjct: 346 AQRGKLSQIAKGFRYEGGESSRKVTPIKSLKPTVVGALVRKAAAEGRQVLVWCVF-DEEA 404

Query: 83  RLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           ++     +G              K    ++++  GKI +L       G+GLN  +    +
Sbjct: 405 KIVGRHLKGVKGVAQLHGDTPEGKRERILEDFRHGKIRVLVGKAGMLGYGLNFPF-VETM 463

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           VF       E   Q + R       + G  + + V+
Sbjct: 464 VFSGYDDSFERFYQAVRR-----AYRYGATKRLTVH 494


>gi|7508223|pir||T32703 hypothetical protein T22D1.7 - Caenorhabditis elegans
          Length = 869

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L    + C +GLN+  G N ++F           Q I RI      + G KR + V
Sbjct: 738 DTKVLLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRIN-----RFGQKRDMNV 791

Query: 168 YYLIAQNTID 177
           Y+L+   ++D
Sbjct: 792 YHLLVDGSLD 801


>gi|269928744|ref|YP_003321065.1| helicase domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269788101|gb|ACZ40243.1| helicase domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 1266

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 73/201 (36%), Gaps = 34/201 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAV-YYDE--EKHWKEVHDEKIKALEVIIEKA--NA 68
           DL+   ++   +        +     + Y ++      +   D K + L  ++ +     
Sbjct: 691 DLEEAELDWDMTEELPEALAEGYREEIRYVEDFLHDIRRLSSDSKRERLMTMLGEIFRER 750

Query: 69  APIIVAYHFNSDLARLQKA-------------------FPQGRTLDKDPCTIQE-WNEGK 108
             +++   +   +  L++A                   +  G  +      I+  + EG+
Sbjct: 751 ETVVIFTQYTDTMDDLREALREVYGNQVACYSGRGGEEWRDGEWVPTTKEEIKNAFREGE 810

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF- 166
            I +L     +   GLNLQ  G +L+ + + W+    +Q I R+      + G +  V  
Sbjct: 811 RIKILLC-TEAASEGLNLQTCG-VLINYDMPWNPMRVEQRIGRVD-----RIGQQYPVVW 863

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V      +TI+  V +RL  +
Sbjct: 864 VRNFFYADTIEARVYERLSDR 884


>gi|70607084|ref|YP_255954.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
 gi|68567732|gb|AAY80661.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
          Length = 467

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 29/209 (13%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K+Y + ++  EL    +  + +A  +        +L N             +  +KI A+
Sbjct: 281 KKYSRSRKVSELLMLAKKGDSDAIEALKIYNDMRKLVN-------------LAKQKIDAV 327

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGKIPLLFA 114
           + I+EK     I++   +      + +         K   + +E     +   K  +L  
Sbjct: 328 KRIVEKEKGNKILIFTQYVDQAEEIARTINGLLITGKISKSERERILNIFKSMKSGVLVL 387

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  GL++      ++           +Q I+R+G  R  + G  +   +Y ++ + 
Sbjct: 388 -TTVGDEGLDIPDANVGIIVTG----TGSRRQFIQRLG--RLLRPGVDKKARLYEIMVRG 440

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T +E   Q L+ K T  D+ L++ + + I
Sbjct: 441 TAEE--YQALKRKETQMDMFLSSAEDDDI 467


>gi|281419823|ref|ZP_06250822.1| helicase [Prevotella copri DSM 18205]
 gi|281406123|gb|EFB36803.1| helicase [Prevotella copri DSM 18205]
          Length = 966

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I ++   +  ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R       
Sbjct: 499 RQAIVDYFRDEAEIMIA-TEAASEGINLQF-CSLIVNYDLPWNPQRVEQRIGRC-----H 551

Query: 158 QAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLL 195
           + G K  V V+  I + N  D  V Q L  K  + D + 
Sbjct: 552 RYGQKNDVVVFNFINKANAADVRVFQLLSEKFHLFDGVF 590


>gi|53718402|ref|YP_107388.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           K96243]
 gi|52208816|emb|CAH34755.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           K96243]
          Length = 1060

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 21/125 (16%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFP--------------QGRTLDKDPCTIQEWNEG--KIP 110
           N   +I+   + +    LQ                   G   D        +     K P
Sbjct: 518 NGERVIIFTEYRATQKWLQGLLAFNGFTGEDRVMTMYGGMHSDDRERVKAAFQTSPEKSP 577

Query: 111 L-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           + +     S   G++LQ   + LV + + W+    +Q   RI    QRQ      V +Y+
Sbjct: 578 VRILLATDSASEGIDLQNYCSRLVHYEIPWNPNRMEQRNGRIDRHGQRQPQ----VMIYH 633

Query: 170 LIAQN 174
            + + 
Sbjct: 634 FVGKG 638


>gi|154484906|ref|ZP_02027354.1| hypothetical protein EUBVEN_02624 [Eubacterium ventriosum ATCC
           27560]
 gi|149733859|gb|EDM49978.1| hypothetical protein EUBVEN_02624 [Eubacterium ventriosum ATCC
           27560]
          Length = 1090

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T  K      +  +GKI ++       G G+N+Q     L    + W   +  Q   R
Sbjct: 750 ANTEKKRKQLFDDVRKGKIRVILGSTFKIGMGVNIQDRLIALHHIDVPWRPADMVQREGR 809

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I     RQ    + V +Y  I + + D    Q L TK      LL  
Sbjct: 810 IL----RQGNINQEVEIYRYITEGSFDAYSWQLLETKQRFISELLAG 852


>gi|321156809|emb|CBW38793.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae]
          Length = 2091

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + Q+   +  + 
Sbjct: 1711 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQRASVKAVMV 1770

Query: 155  RQ------------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+            RQ    + V +Y+ I + + D  +      K
Sbjct: 1771 RRWVLSLQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENK 1815


>gi|291294844|ref|YP_003506242.1| helicase domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290469803|gb|ADD27222.1| helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 1016

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 42/195 (21%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A  +A+      ++          +     +D KI  L  +I +     I+V  +F   +
Sbjct: 573 AQVAAADLEHLREM------LRMVEPVAVENDPKIAKLIELIRERPGKKIVVFSYFQDTI 626

Query: 82  ARLQKAFPQ---------------GRTLDKDPCTI-QEW----------NEGKIPLLFAH 115
             L++AF +               G    KD   I + +           E ++ LL A 
Sbjct: 627 RYLEQAFRETYAESLQAVRWAVVDGSVRTKDRTDILRRFAPKSQKTQVAPEDELDLLLA- 685

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQN 174
                 G NLQ   + L+ F L W+     Q   RI      + G    V  ++    ++
Sbjct: 686 TDVFSEGQNLQD-ADTLINFDLHWNPTRMIQRAGRID-----RLGSPFEVIHIHNFFPED 739

Query: 175 TIDEL--VLQRLRTK 187
            ++E+  +L+RL  K
Sbjct: 740 GLEEMLGLLERLMEK 754


>gi|261329152|emb|CBH12131.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1612

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +LF        GLNL +  N L+F     +  +HQQ + RI      + G  +  +VY +
Sbjct: 1502 VLFLSSRVACSGLNLVF-ANRLIFMEPNLNPAQHQQAVGRID-----RCGQLKRTYVYVM 1555

Query: 171  IAQNTIDELVLQR 183
             A  TI+E ++ R
Sbjct: 1556 YAPRTIEERIMNR 1568


>gi|168183745|ref|ZP_02618409.1| helicase, Snf2 family [Clostridium botulinum Bf]
 gi|182673113|gb|EDT85074.1| helicase, Snf2 family [Clostridium botulinum Bf]
          Length = 900

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT ++    ++ +   +I +L    A+   GLNLQ  G  L+ F L W+    +Q   RI
Sbjct: 738 RTKEEIKSMVKRY---EIKILLGTDAAS-EGLNLQTLG-TLINFDLPWNPTRLEQRKGRI 792

Query: 152 GVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTK 187
                 + G    V  +Y +  ++++++ V   L  +
Sbjct: 793 Q-----RIGQVNDVVYIYNMRYKDSVEDRVHSMLSER 824


>gi|326692836|ref|ZP_08229841.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Leuconostoc
           argentinum KCTC 3773]
          Length = 385

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           + +  K++ L+ + E+      I+ Y ++++L  L +A         +     E+  G  
Sbjct: 249 QNNKAKLEWLDSVKEEYAKDKTIIFYTYDNELDLLNEALKDYTVGHVNG---HEYTPGG- 304

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   S G GL L    +  +++SL     +  Q        R  + G    +   Y
Sbjct: 305 DFTLIQITS-GSGLTLNEYKH-AIWWSLPDSSIDFDQ-----SKYRNYRIGQDTKITRDY 357

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L+   TID+ +   L  K      +  
Sbjct: 358 LVVHGTIDDSIWNALILKQNFNAEMFE 384


>gi|57209106|emb|CAI41121.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 129

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +  +GL +    ++L       +     Q I R+      + G  +   V+  
Sbjct: 1   ILLLPLHTGSNGLTIIEATHVL-LVEPILNPAHELQAIGRV-----HRIGQTKPTIVHRF 54

Query: 171 IAQNTIDELVLQRLRT 186
           + + TI+E +   L+T
Sbjct: 55  LIKATIEERMQAMLKT 70


>gi|237795505|ref|YP_002863057.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
 gi|229260745|gb|ACQ51778.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
          Length = 900

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT ++    ++ +   +I +L    A+   GLNLQ  G  L+ F L W+    +Q   RI
Sbjct: 738 RTKEEIKSMVKRY---EIKILLGTDAAS-EGLNLQTLG-TLINFDLPWNPTRLEQRKGRI 792

Query: 152 GVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTK 187
                 + G    V  +Y +  ++++++ V   L  +
Sbjct: 793 Q-----RIGQVNDVVYIYNMRYKDSVEDRVHSMLSER 824


>gi|145225878|ref|YP_001136532.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145218341|gb|ABP47744.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 1594

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 4/105 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T            +G++ +L       G G N+Q   + L      W     +Q   
Sbjct: 1250 EATTPKAREALFAGCRDGRVAVLIGSTPKVGIGTNIQNRLHSLHHVDPTWTAAAWEQRNG 1309

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R      R       V +Y  + + T D  +   +  K+   + L
Sbjct: 1310 RAV----RNGNQHDVVDIYSYVTEGTFDAYMFGIVERKARGFEQL 1350


>gi|256251590|emb|CAR63698.1| putative SNF2 family N-terminal domain containing protein
           [Angiostrongylus cantonensis]
          Length = 284

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  + V++Y  IAQ T++E + +R  TK +    +++
Sbjct: 1   YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD 40


>gi|299472761|emb|CBN80329.1| Helicase [Ectocarpus siliculosus]
          Length = 609

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 68  AAPIIVAYHF--NSDLA-RLQKA-------FPQGRTLDKDPCT------IQEWNEGKIPL 111
              ++ AYH    +DL   +++         PQ  T + D          Q +N G++ L
Sbjct: 441 GRLLLYAYHKDTIADLEGEIRRLCDEKNIVSPQISTYNGDTSAGERMRIKQAFNNGEMDL 500

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR---AVFVY 168
           L     +   GL+LQ   + +  F LWW++ +  Q+I R    +      K     V+VY
Sbjct: 501 LIIS-KAGSVGLDLQC-TSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVY 558

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +     D+ V      K     +LL+A+KK
Sbjct: 559 QSVFVTKQDKGV------KVFDAQVLLDAVKK 584


>gi|323441317|gb|EGA98982.1| phage helicase [Staphylococcus aureus O46]
          Length = 301

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEK 46
           K Y + ++    + + +  + A N AS + K LQL+NGAVY D+  
Sbjct: 254 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTDDGD 299


>gi|167855922|ref|ZP_02478671.1| hypothetical ATP-dependent helicase [Haemophilus parasuis 29755]
 gi|167852959|gb|EDS24224.1| hypothetical ATP-dependent helicase [Haemophilus parasuis 29755]
          Length = 950

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ+  ++L+ + L W+ +  +Q I R       + G K  V V   + 
Sbjct: 504 MIATEAAAEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC-----HRYGQKFDVVVINFLN 557

Query: 173 Q-NTIDELVLQRLRTKSTIQDLLLNA 197
           Q N  D+ VL+ L  K  + D +  A
Sbjct: 558 QRNEADQRVLELLSEKFKLFDGVFGA 583


>gi|78190661|gb|ABB29652.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Suberites fuscus]
          Length = 439

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 27/132 (20%)

Query: 26  ASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
           ASK     QL    G     +     E     +               ++   + S L  
Sbjct: 317 ASKLQALKQLLHDCGIGVSGDGGVSSEGVGSAVSQ----------HRALLFCQYKSMLDI 366

Query: 84  LQK-------------AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGG 129
           +++                           +Q++N+   I +L       G GLNL  G 
Sbjct: 367 IERDLFKGHMPSVTYLRLDGSVAAGNRHSVVQKFNDDPSIDVLLLTTHVGGLGLNLT-GA 425

Query: 130 NILVFFSLWWDL 141
           + ++FF   W+ 
Sbjct: 426 DTVIFFEHDWNP 437


>gi|90420968|ref|ZP_01228872.1| putative helicase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334746|gb|EAS48522.1| putative helicase [Aurantimonas manganoxydans SI85-9A1]
          Length = 543

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 22/138 (15%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTL--------------DKDPCTIQEWNEGK-IPL 111
               +++   F  ++  +         +              D     I+ +++ + + +
Sbjct: 359 EGHKVLIWSSFVRNVEYMASRLADLGAVYIHGGVDAGDEDDADTREGKIKAFHDDENVRV 418

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV-FVYYL 170
           + A+PA+   G++L    +  ++    ++   + Q  +RI      + G  R    +  +
Sbjct: 419 MVANPAAASEGISLHRVCHHAIYLDRTFNAAHYLQSEDRI-----HRFGLPRDQKTIIEI 473

Query: 171 I-AQNTIDELVLQRLRTK 187
           +    T+DE V  RL  K
Sbjct: 474 VECTRTVDETVRSRLGFK 491


>gi|94985644|ref|YP_605008.1| helicase-like protein [Deinococcus geothermalis DSM 11300]
 gi|94555925|gb|ABF45839.1| helicase-like protein [Deinococcus geothermalis DSM 11300]
          Length = 933

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 23/202 (11%)

Query: 3   QYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y   + E    D          ++  T + L+ A  A      +  +   D K+  L  
Sbjct: 415 VYDPAEDEGQTLDTTPGTQTESEASEDTRRLLEFAARA------EALRGGKDAKLGKLTG 468

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           I++   A+    IV   F +    + +A   G    +        +  +   + A  A+ 
Sbjct: 469 IVKDLLASGHHPIVFCRFIATAEYVAQALRSGLDGVEVRAVTGRLSPEEREAVVADLATA 528

Query: 120 -----------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G+NLQ   + ++ + L W+    +Q   R+    Q      + V +Y
Sbjct: 529 ERRILVATDCLSEGINLQQDFSAVIHYDLPWNPTRLEQREGRVDRYGQPSKA-VKVVTLY 587

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
              A N ID ++L+ L  K   
Sbjct: 588 G--ADNRIDRIILEVLVRKHRT 607


>gi|307108726|gb|EFN56965.1| hypothetical protein CHLNCDRAFT_21780 [Chlorella variabilis]
          Length = 119

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 17/110 (15%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPA 117
           A  ++   + + +  L+    Q             L +    I  +  +    +      
Sbjct: 8   AKALIFSQYVTTIEWLKTRLTQAGFGYRFISGSMPLKQRAKAINAFQQDPPTTVFLLSMR 67

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           S   G+NL    + +       +    +Q I R       + G +R V V
Sbjct: 68  SGSVGINLT-AASHVFLMEPALNPALEEQAIGRAW-----RMGQQRTVTV 111


>gi|71993231|ref|NP_001023359.1| hypothetical protein T05A12.4 [Caenorhabditis elegans]
 gi|54027931|gb|AAV28333.1| Hypothetical protein T05A12.4a [Caenorhabditis elegans]
          Length = 1622

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +L    + C +GLN+  G N ++F           Q I RI      + G KR + V
Sbjct: 1491 DTKVLLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRIN-----RFGQKRDMNV 1544

Query: 168  YYLIAQNTID 177
            Y+L+   ++D
Sbjct: 1545 YHLLVDGSLD 1554


>gi|328848688|gb|EGF97890.1| hypothetical protein MELLADRAFT_84184 [Melampsora larici-populina
           98AG31]
          Length = 420

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++      W+ +  QQ ++R+      + G  + V V++++   +I++ +    + K+  
Sbjct: 324 VVYLQDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVTVQSIEQHLYNVQKRKAAR 378

Query: 191 QDLLL 195
              ++
Sbjct: 379 AKRVI 383


>gi|219116552|ref|XP_002179071.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409838|gb|EEC49769.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 233

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF-S 136
            S   R+    P      +        ++  + +      + G  + L       V+F  
Sbjct: 40  RSKYIRIDGKTP---AKFRQEQITSFQSDPTVRVALLGITAAGVAVTLTASST--VWFAE 94

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           L+W      Q  +R       + G +  V   Y +A+ T+D+++ + +  K
Sbjct: 95  LFWTPALMIQAEDRC-----HRIGQQAQVKCLYFVAKGTLDDVLWKLIEKK 140


>gi|77407164|ref|ZP_00784151.1| SNF2 family protein [Streptococcus agalactiae H36B]
 gi|77174227|gb|EAO77109.1| SNF2 family protein [Streptococcus agalactiae H36B]
          Length = 769

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q   
Sbjct: 687 DANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNG 746

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQN 174
           R+     RQ    + V +Y+ I + 
Sbjct: 747 RLI----RQGNMHQEVDIYHYITKG 767


>gi|300779250|ref|ZP_07089108.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504760|gb|EFK35900.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
          Length = 1702

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             ++N GKI ++     +   G+NLQ     L   SL ++    +Q+  R      RQ   
Sbjct: 1405 DDFNSGKIKIIIGS-EAIQEGMNLQENTTDLYMLSLPYNFTTLRQVEGRA----WRQGNK 1459

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               V + +++  ++ID  +LQ+L++K   Q   L A+KK
Sbjct: 1460 FENVRINFMLTNDSIDVFMLQKLQSK---QARYLEAMKK 1495


>gi|329667808|gb|AEB93756.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           johnsonii DPC 6026]
          Length = 630

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 24/171 (14%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           V   K +    +I+K  +    ++V   F   + ++                        
Sbjct: 445 VESPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTILVYGATPKQDRE 504

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI       
Sbjct: 505 GMINNFRTGDAQVLVSNPNTLGESISLHQKVHDAVYFEYNFNLTFMLQSRDRINRLGLPA 564

Query: 159 AGFKRAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
             + R    YYL+ +        ID  V ++L+ K  +   +++A+  + +
Sbjct: 565 NQYTR---YYYLMTKGDVAHMGFIDNTVYKKLKDKEKV---MIDAIDGQLL 609


>gi|159469426|ref|XP_001692864.1| SNF2 family chromodomain-helicase [Chlamydomonas reinhardtii]
 gi|158277666|gb|EDP03433.1| SNF2 family chromodomain-helicase [Chlamydomonas reinhardtii]
          Length = 3365

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 52/184 (28%), Gaps = 40/184 (21%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEK-IKALEVIIEKANAAPIIVAYHFNS 79
            A N      +   QLA        ++        K +  LE    +A      V      
Sbjct: 1289 ASNKLVVLDRMLRQLAARG-----QRVIVLSQSAKTLDVLEQYASRAFGPGAAV------ 1337

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEG--------------KIPLLFAHPASCGHGLNL 125
               R+  + P          TI  +N                   L+     S G G NL
Sbjct: 1338 ---RIDSSTPSA----ARHATIAAFNAAVSRADAANGPAADAAPFLVLMTTRSFGLGTNL 1390

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                  ++ F   W      Q + R       + G    + VY L A+ T++E +L    
Sbjct: 1391 PAVSAAVI-FDSDWHPRLDMQALRR-----AYRLGESGRLAVYRLYARGTVEERLLTLAE 1444

Query: 186  TKST 189
             +  
Sbjct: 1445 RRHA 1448


>gi|21492541|ref|NP_659660.1| NPH-I, transcription termination factor [Sheeppox virus]
          Length = 635

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPASCGHGLN 124
            ++    F      +       RT +     + ++NE     G I  +     S G G++
Sbjct: 398 LLLYFSVFK-----ISYIEFSSRTKNTRVQMVSKFNEEVNTDGTIIKVCVFSLSGGEGIS 452

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V+++IA+     +T+D
Sbjct: 453 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVNTPKNRRYVNVHFIIARLSNGESTVD 511

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           + +L+ +RTKS     L   LK+ +I
Sbjct: 512 DDLLEIIRTKSKEFSQLFKVLKESSI 537


>gi|168697933|ref|ZP_02730210.1| Helicase, C-terminal [Gemmata obscuriglobus UQM 2246]
          Length = 1390

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            K     ++   G + +L    +  G G N+Q     +      W   E +Q   RI    
Sbjct: 1111 KKQALFEKVRNGAVRVLIGSTSKMGTGTNVQKRLVAMHHLDAPWKPAEVEQRDGRIL--- 1167

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RQ      V +Y  + + + D  + Q L TK+     ++  
Sbjct: 1168 -RQGNQNEEVAIYRYVTEGSFDAYMWQALETKAKFIGQIMTG 1208


>gi|161789169|ref|YP_001595739.1| SNF2 family helicase [Vibrio sp. 0908]
 gi|161761455|gb|ABX77100.1| helicase, Snf2 family [Vibrio sp. 0908]
          Length = 583

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 68  AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             P+++               +DL  L     + +T  +     + +  G+  LL     
Sbjct: 403 GTPVVLFGWHRGVYDIWAKELADLNPLFYTGSESQTQKERNK--KAFINGESDLLIMSLR 460

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S      +Q+  + ++F    W  +   Q I R+      + G + +VFV++ + Q   D
Sbjct: 461 SGAGTDGIQHRCSTVIFGEEDWSPQVMTQCIGRLD-----RDGQEDSVFVFHAVTQYGSD 515

Query: 178 ELVLQRLRTKSTIQDLLLN 196
             +L  L  KS+    + +
Sbjct: 516 PEMLSILGVKSSQARGIQD 534


>gi|21754110|dbj|BAC04459.1| unnamed protein product [Homo sapiens]
          Length = 131

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +I +L     +  +GL +    ++L       +     Q I R+      + G  +  
Sbjct: 22  DPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPAHELQAIGRV-----HRIGQTKPT 75

Query: 166 FVYYLIAQNTIDELVLQRLRT 186
            V+  + + TI+E +   L+T
Sbjct: 76  IVHRFLIKATIEERMQAMLKT 96


>gi|8489199|gb|AAF75617.1|AF216814_8 unknown [Lactococcus lactis subsp. lactis bv. diacetylactis]
          Length = 850

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 31/193 (16%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           I++  S++K  +C++LA   +    +     +    I  +  + +      I VA  +  
Sbjct: 662 IDSITSSAKFNECIKLAEHLI---NDSKVIVIWCIFIDTINQMKQALERKGIRVAVIYGG 718

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             AR            +   TI  +  G+  +L  +P +    ++L    +  ++    +
Sbjct: 719 IGAR------------QREETIVAFQNGEFDVLITNPHTLAESVSLHKIAHDAIYLEYSF 766

Query: 140 DLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQ 191
           +L    Q  +RI      + G    +    YY +       + TID  +  RL  K    
Sbjct: 767 NLTHMLQSRDRI-----HRLGLPENQETNYYYFMTEGQEGKRGTIDRKIYSRLLAKK--- 818

Query: 192 DLLLNALKKETIH 204
           D++  A++ E I 
Sbjct: 819 DIMYEAIESELIK 831


>gi|311261056|ref|XP_003128623.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Sus
           scrofa]
          Length = 1278

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 28/172 (16%)

Query: 2   KQYHK-FQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y    ++   +      +    N  +  ++  +  N     + E      HD  ++A+
Sbjct: 323 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGEGPP-GTHDFHLQAM 381

Query: 60  ------EVIIEK------ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKD 97
                  V+I+K      A    +++       L  L+    Q R L          +  
Sbjct: 382 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 441

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              I  +++      +      + G G+NL    +  + F   W+ +   Q+
Sbjct: 442 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQI 492


>gi|268535802|ref|XP_002633036.1| Hypothetical protein CBG05712 [Caenorhabditis briggsae]
 gi|187034780|emb|CAP26597.1| hypothetical protein CBG_05712 [Caenorhabditis briggsae AF16]
          Length = 1659

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              TI +++    + +L    + C +GLN+  G N ++F           Q I RI     
Sbjct: 1533 GKTIVDFDISDDVKILLCPLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRIN---- 1587

Query: 157  RQAGFKRAVFVYYLIAQNTID 177
             + G +RA+ VY+L+ + ++D
Sbjct: 1588 -RFGQRRAMRVYHLVVEGSLD 1607


>gi|254197450|ref|ZP_04903872.1| dead/deah box helicase [Burkholderia pseudomallei S13]
 gi|169654191|gb|EDS86884.1| dead/deah box helicase [Burkholderia pseudomallei S13]
          Length = 960

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 92  RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T D     ++ + E GK+ +      +   G+NLQ+  ++++ + L W+ +  +Q I R
Sbjct: 489 KTADTRAALVEHFKERGKVMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIEQRIGR 544

Query: 151 IGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   +   N  D+ V + L  K  + + +  A
Sbjct: 545 C-----HRYGQKHDVVVVNFVDLSNEADKRVYKLLAEKFQLFEGVFGA 587


>gi|323456512|gb|EGB12379.1| hypothetical protein AURANDRAFT_19641 [Aureococcus anophagefferens]
          Length = 318

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 72  IVAYHFN---SDLAR-LQKAFPQGRTL--------DKDPCTIQEWNEGKIP---LLFAHP 116
           ++   +    ++L R L++ FP  R          +    +I+E+   + P   +     
Sbjct: 37  VIFTEYKDVHAELVRDLRQTFPSFRVFEFSGGTDANVRHRSIREFQADEGPPDRIFVITM 96

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   G+ L    +++       D  +  Q   RI      + G    V +   +   T+
Sbjct: 97  RAGSVGITLT-AADVVYLLGPCVDPADEVQAAGRI-----HRLGQSSDVLIKKFVVNGTV 150

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +  + +           L +A
Sbjct: 151 EASICELHDKIKAGALALDSA 171


>gi|268611923|ref|ZP_06145650.1| putative helicase [Ruminococcus flavefaciens FD-1]
          Length = 628

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +T  +      +   G+I +L    A  G G N+Q     +    + W   + +Q   
Sbjct: 236 DAKTEQQKADLFDKVRSGEILVLLGSTAKMGTGTNVQKKLIAVHDLDIPWRPADLEQRAG 295

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI     RQ    + V ++  + + T D    Q L  K      ++ +
Sbjct: 296 RII----RQGNENKQVQIFRYVTKGTFDAYSYQTLENKQKFISQIMTS 339


>gi|67920660|ref|ZP_00514180.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858144|gb|EAM53383.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 959

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 98  PCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+E+ + K  L L         G+NL +  + L+ F + W L   QQ   RI    Q
Sbjct: 495 NEVIEEFGDEKSKLRLLIATDVASEGINLHFLCHRLIHFDIPWSLMALQQRNGRIDRYGQ 554

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q    R +      AQ    E +++ L  K  
Sbjct: 555 EQQPQIRYLLTRCQNAQMDEAERIIRVLIKKDE 587


>gi|266619865|ref|ZP_06112800.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
 gi|288868574|gb|EFD00873.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
          Length = 1389

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNE-------------GKIPLLFAHPASCGHGLNL 125
            S    L++        D++   I ++N              G+I +L       G G+N+
Sbjct: 1001 SFYQALKEEMTAAGVKDEEIAFIHDYNTDIQRAELFEKVKTGEIRILIGSTEKMGAGMNV 1060

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            Q     L    + W   +  Q   RI     RQ      + ++  I + T D  + Q L 
Sbjct: 1061 QDKLIALHHLDVPWRPADLTQRNGRIL----RQGNENEEISIFNYITEQTFDAYLWQILE 1116

Query: 186  TKSTIQDLLLNA 197
             K      ++  
Sbjct: 1117 QKQKYISQIMTG 1128


>gi|206600246|ref|YP_002241852.1| gp65 [Mycobacterium phage Ramsey]
 gi|206287334|gb|ACI12677.1| gp65 [Mycobacterium phage Ramsey]
          Length = 446

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +  + +G+  +L   P+    GLN Q+  + + F  +    E++ Q I R    
Sbjct: 341 DEKAQLLLGFADGQFEVLVTKPSIASQGLNYQH-CHRMAFVGMGDSYEQYYQAIRRC--- 396

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  + V+ + ++++  ++  +   +  K      +  AL +E   V
Sbjct: 397 --YRYGQTKVVYAHVIVSE--LESQIAANVARKEQQAGDITRALVEEMRRV 443


>gi|295112607|emb|CBL31244.1| Helicase conserved C-terminal domain./SNF2 family N-terminal domain.
            [Enterococcus sp. 7L76]
          Length = 2266

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 62   IIEKANAAPIIVAYHFNSDLAR--LQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
            II   +  P    ++   ++ R  ++K  P+         +   +     +   +G+I +
Sbjct: 1858 IIFSDSGTPKSTQFNVYDEVKRLLIEKGIPEKEIAFIHSAKNDRQREELFENVRQGEIRI 1917

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G G N+Q     +    + W   +  Q   RI     RQ    + V +Y  +
Sbjct: 1918 LLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQRDGRIV----RQGNENKEVQIYRYV 1973

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
            A+N+ D  + Q    K    + ++
Sbjct: 1974 AKNSFDSFLWQTQENKLKFINQIM 1997


>gi|331665952|ref|ZP_08366846.1| ATP-dependent helicase [Escherichia coli TA143]
 gi|331057003|gb|EGI28997.1| ATP-dependent helicase [Escherichia coli TA143]
          Length = 952

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 KTVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|258514804|ref|YP_003191026.1| helicase domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778509|gb|ACV62403.1| helicase domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 1187

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 76/193 (39%), Gaps = 10/193 (5%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEVIIE 64
           +++RE    +  +  +    +SK    LQ  +        +     +       L  I++
Sbjct: 628 EWERECLKSMLKDMADLTGDSSKMKLLLQTLDQRKDRQTGRIQQTVIFTRFYDTLTDIVK 687

Query: 65  KA-NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +   A P ++   ++   A+   +              + +   ++ +L    A+   GL
Sbjct: 688 RLCQADPQMLVGTYSGQGAQCFNSVTGRMVNLDREEVKERFLRSEVDILVCTDAAA-EGL 746

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-AVFVYYLIAQNTIDELVLQ 182
           NLQ   ++LV F L W+  + +Q I RI      + G K   ++V  L    + +E+V  
Sbjct: 747 NLQT-ADLLVNFDLGWNPMKVEQRIGRID-----RIGQKHEDIYVLNLCYAGSAEEVVYG 800

Query: 183 RLRTKSTIQDLLL 195
           RL  +    ++++
Sbjct: 801 RLLNRLANANMIV 813


>gi|62637474|ref|YP_227472.1| NPH-I (transcription termination factor) [Deerpox virus W-848-83]
 gi|115503334|gb|ABI99252.1| transcription termination factor NPH-I [Deerpox virus W-848-83]
          Length = 635

 Score = 51.9 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 18/149 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GK-IPLLFAHPASCGH 121
              I++ Y    +++ ++ +    RT D     + ++NE     G+ I +      S G 
Sbjct: 395 GISILLLYFSIFEISSIEFS---SRTKDTRVKMVSKFNEECNTNGEHIKVCVFSL-SGGE 450

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----N 174
           G++     +I +   + W+    +Q+I R             +R V V+++IA+     +
Sbjct: 451 GISFFSINDIFIL-DMTWNEASLKQIIGRAIRLNSHIFTPEDRRYVNVHFIIARLSNGDS 509

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T+DE +L  +RTKS     L   LK+ +I
Sbjct: 510 TVDEDLLDIIRTKSKEFTQLFKVLKESSI 538


>gi|209523332|ref|ZP_03271887.1| helicase domain protein [Arthrospira maxima CS-328]
 gi|209496074|gb|EDZ96374.1| helicase domain protein [Arthrospira maxima CS-328]
          Length = 600

 Score = 51.9 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++     P+ +         GLNL Y  + L+ F + W L   QQ   RI      
Sbjct: 128 EIVEKFGYENSPVRILIATEVASEGLNLHYLSHKLIHFDIPWSLMTLQQRNGRID----- 182

Query: 158 QAGFKRAVFVYYLIAQNTID-----ELVLQRLRTKST 189
           + G  R   + YL+ ++ ++     E +++ L TK  
Sbjct: 183 RYGQTRKPEIRYLLTRSQVERMDEVERIIKVLLTKDE 219


>gi|54027756|ref|YP_121997.1| hypothetical protein pnf11080 [Nocardia farcinica IFM 10152]
 gi|54019264|dbj|BAD60633.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 2153

 Score = 51.9 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I  LF   +  G G+N+Q     ++     W   + +Q   R      RQ      +
Sbjct: 1760 NGSIQFLFGSTSKMGVGVNIQDRMVAMLHVDCPWRPADIEQRDGR----GIRQGNQNEEI 1815

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  ++ + T D  +      K+ + +  +  
Sbjct: 1816 AVGRVVTEGTFDARMWAAQARKAAMVNQFMKG 1847


>gi|289621598|emb|CBI52381.1| unnamed protein product [Sordaria macrospora]
          Length = 501

 Score = 51.9 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 33/139 (23%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPC-TIQEW-NEGKIPLLFAHP 116
               +V   + + L  ++              G+   ++    +  +  +    +L    
Sbjct: 345 ETKSVVFSTWRTTLDVIEAGLKTEGIPCLRFDGKVPQRERQNVVNRFRQDPSCRVLLLTL 404

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           +    G                 +    +Q + RI      + G  R V       +++ 
Sbjct: 405 SCGAVG-----------------NPTLEEQALARI-----HRMGQTREVTTVRFYVRDSF 442

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E V++    K  +  +LL
Sbjct: 443 EERVMEVQEKKRKLVTVLL 461


>gi|217969386|ref|YP_002354620.1| SNF2-related protein [Thauera sp. MZ1T]
 gi|217506713|gb|ACK53724.1| SNF2-related protein [Thauera sp. MZ1T]
          Length = 975

 Score = 51.9 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 94  LDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +D+    I  +  ++G    +     +   G+NLQ+   +++ + L W+ +  +Q I R 
Sbjct: 505 VDRRTALIDHFRKDDGTGAEIMIATEAAAEGVNLQFCA-LIINYDLPWNPQRVEQRIGRC 563

Query: 152 GVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G +  V V   +  +N  D+ VL+ L  K  +   +  A
Sbjct: 564 -----HRYGQRFDVVVINFLNTRNQADQRVLELLTEKFNLFSGVFGA 605


>gi|291530112|emb|CBK95697.1| SNF2 family N-terminal domain [Eubacterium siraeum 70/3]
          Length = 1171

 Score = 51.9 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T  K      +   G I +L       G G+N+Q     L    + W   +  Q   
Sbjct: 832 DAETETKRSLLFAKVRSGDIRILIGSTYKLGLGVNVQERLIALHHIDVPWRPADMTQREG 891

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI     RQ      V++Y  I + + D    Q L TK      LL+ 
Sbjct: 892 RIL----RQGNTNSKVYIYRYITEGSFDAYSWQLLETKQRFISELLSG 935


>gi|320644400|gb|EFX13465.1| Helicase family protein [Escherichia coli O157:H- str. 493-89]
 gi|320649718|gb|EFX18242.1| Helicase family protein [Escherichia coli O157:H- str. H 2687]
          Length = 952

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|291544286|emb|CBL17395.1| Helicase conserved C-terminal domain [Ruminococcus sp. 18P13]
          Length = 390

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ N GK  ++ A  ++ G G N+Q     +    + W   + +Q   RI     RQ  
Sbjct: 6   FRDINAGKYRVVIASTSTLGTGANVQERLAAVHHVDIPWKPSDFEQREGRIL----RQGN 61

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               V ++  I + T+D  + Q +  K+     LL+
Sbjct: 62  SFSEVQIFNYITEGTMDSYLYQVVTDKARFIAQLLD 97


>gi|255088523|ref|XP_002506184.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226521455|gb|ACO67442.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1741

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 98   PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  + ++    +L  H  S   GL L    +++V    +    +  Q   R+     
Sbjct: 1565 EGAIARFRDDPATQVLLLHAGSAAAGLTLTQ-ADLVVLLEPFLSPGDEAQAANRV----- 1618

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             + G  R V       + T++E +L     +  
Sbjct: 1619 HRIGQTRPVRCVTYFVEGTVEERLLAFRTRQRE 1651


>gi|255973573|ref|ZP_05424159.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285046|ref|ZP_07565196.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|255966445|gb|EET97067.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502947|gb|EFM72207.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
          Length = 1737

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLARLQKAFPQG 91
            LQ +   ++ D         +   +  +++I+K      I   H   +D  R ++ F + 
Sbjct: 1323 LQHSTQIIFSDSGTPKSNQFNVYDEVKQLLIKKGIPEKEIAFIHSAKNDRQR-EELFEKV 1381

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R             +G+I +L       G G N+Q     +    + W   +  Q   RI
Sbjct: 1382 R-------------QGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQRDGRI 1428

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 RQ    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1429 V----RQGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1468


>gi|320665547|gb|EFX32593.1| Helicase family protein [Escherichia coli O157:H7 str. LSU-61]
          Length = 952

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|302035518|ref|YP_003795840.1| putative dEAD/DEAH box helicase, SNF2 family [Candidatus Nitrospira
           defluvii]
 gi|300603582|emb|CBK39912.1| putative DEAD/DEAH box helicase, SNF2 family [Candidatus Nitrospira
           defluvii]
          Length = 912

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I ++ A  A+C  GLNLQ  G  L+   L W+    +Q I RI    Q++      V +
Sbjct: 759 EIRIMVATDAAC-EGLNLQTLG-TLINIDLPWNPTRLEQRIGRIKRFGQKR----ETVDM 812

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             L+ + T+DE + +RL  +   +  L  ++
Sbjct: 813 LNLVNEQTVDEKIYERLSERMRNRYDLFGSV 843


>gi|320660619|gb|EFX28080.1| Helicase family protein [Escherichia coli O55:H7 str. USDA 5905]
          Length = 952

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|288556434|ref|YP_003428369.1| SNF2 family DNA/RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547594|gb|ADC51477.1| SNF2 family DNA/RNA helicase [Bacillus pseudofirmus OF4]
          Length = 855

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 78  NSDLAR--LQKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             DL +  +      G TL ++   I +++   +I +L  +P + G  ++L +  +  ++
Sbjct: 710 KDDLRQKGINAEVIYGNTLQEERDAIIEQFLNREIDILITNPHTLGESVSLHHTCHDAIY 769

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQN------TIDELVLQRLRT 186
               ++L    Q  +RI      + G K       Y+L+ Q       TIDE + QRL  
Sbjct: 770 LEYSFNLTHLLQSRDRI-----HRLGLKEDDYTQYYFLMLQGQAGERSTIDERIYQRLMV 824

Query: 187 KSTIQDLLLNALKKETI 203
           K    + +L+A+++  +
Sbjct: 825 KE---ERMLSAIERGVL 838


>gi|15804878|ref|NP_290919.1| putative ATP-dependent helicase [Escherichia coli O157:H7 EDL933]
 gi|168749544|ref|ZP_02774566.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754866|ref|ZP_02779873.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760541|ref|ZP_02785548.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168766575|ref|ZP_02791582.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168773995|ref|ZP_02799002.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168782811|ref|ZP_02807818.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168784937|ref|ZP_02809944.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|168797866|ref|ZP_02822873.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|170683792|ref|YP_001746739.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|195937309|ref|ZP_03082691.1| helicase domain-containing protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806552|ref|ZP_03248889.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811987|ref|ZP_03253316.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818305|ref|ZP_03258625.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398792|ref|YP_002273828.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326570|ref|ZP_03442654.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254796304|ref|YP_003081141.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226661|ref|ZP_05940942.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256952|ref|ZP_05949485.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285686|ref|YP_003502504.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|12519307|gb|AAG59485.1|AE005661_1 putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|170521510|gb|ACB19688.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|187770256|gb|EDU34100.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016143|gb|EDU54265.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999742|gb|EDU68728.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189357770|gb|EDU76189.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189363963|gb|EDU82382.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189368951|gb|EDU87367.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189375059|gb|EDU93475.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|189379473|gb|EDU97889.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208726353|gb|EDZ75954.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733264|gb|EDZ81951.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738428|gb|EDZ86110.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160192|gb|ACI37625.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322791|gb|EEC31215.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254595704|gb|ACT75065.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765559|gb|ADD59520.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|320190583|gb|EFW65233.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639030|gb|EFX08676.1| Helicase family protein [Escherichia coli O157:H7 str. G5101]
 gi|320654766|gb|EFX22735.1| Helicase family protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|326345385|gb|EGD69128.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1125]
 gi|326346760|gb|EGD70494.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1044]
          Length = 952

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|91202107|emb|CAJ75167.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 918

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 35/173 (20%)

Query: 50  EVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQ------------- 90
           +  D K   L+ I+ +++          IV   +   +  +   F +             
Sbjct: 679 QERDPKYDLLKRILTESHIKEPWINRGAIVFSQYYDTVQWVCGRFVKEFPNITFGLYAGG 738

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   G    K    I++    +   L     +   GLNLQ  G  L+   L W+  
Sbjct: 739 DKSGIYENGIYHRKSKEDIKKMVRTRQIKLLFGTDAASEGLNLQTLG-TLINLDLPWNPT 797

Query: 143 EHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTK-STIQDL 193
             +Q   RI      + G +R  V++Y +  ++++++ V + L  +   IQDL
Sbjct: 798 RLEQRKGRIQ-----RIGQERDEVWIYNMRYKDSVEDKVHRLLSNRLKNIQDL 845


>gi|300928441|ref|ZP_07143973.1| protein, SNF2 family [Escherichia coli MS 187-1]
 gi|300463558|gb|EFK27051.1| protein, SNF2 family [Escherichia coli MS 187-1]
          Length = 952

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 585


>gi|206600139|ref|YP_002241644.1| gp60 [Mycobacterium phage Pacc40]
 gi|206287227|gb|ACI12571.1| gp60 [Mycobacterium phage Pacc40]
          Length = 1341

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 22/165 (13%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-LQKAFPQGRT----------LDKDPC 99
           D ++  L  I+     +    IV +   +D  R ++KA                 D+   
Sbjct: 467 DARLSKLTEIVTDHAEHGEGQIVIWCDLNDEQRAIEKALEDAGLSFSSVYGSLDPDEVER 526

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +W       L   P   G G+NLQ   +  V+  +     +  Q + RI      + 
Sbjct: 527 RLSDWKNRDTYALIGKPVMLGQGMNLQQ-AHTCVYIGITHKFNDLIQSLHRIQ-----RF 580

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G        +LI   T +  V++ +R K      L + +  + IH
Sbjct: 581 GQTHPCTA-HLIHSET-EREVVRIIREKWAQHRELTSTM-TDIIH 622


>gi|15834515|ref|NP_313288.1| ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai]
 gi|13364739|dbj|BAB38684.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           Sakai]
          Length = 943

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 482 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 536

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ + +      D  VL+ L  K     
Sbjct: 537 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQ 576


>gi|300024515|ref|YP_003757126.1| SNF2-related protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526336|gb|ADJ24805.1| SNF2-related protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 583

 Score = 51.5 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +Q + +G   LL     S   GL+ LQ     +VF  L W  + H+Q + R+     
Sbjct: 440 AKAVQMFMDGASNLLIMSLRSGA-GLDGLQQRCRTIVFGELDWSGKVHEQCVARLD---- 494

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G +  V   YL+A    D  V+  +  K++    +++
Sbjct: 495 -RPGQEHQVDAIYLVADGGSDPAVMGVIGLKNSQAAGIVD 533


>gi|330468260|ref|YP_004406003.1| helicase SNF2 family protein [Verrucosispora maris AB-18-032]
 gi|328811231|gb|AEB45403.1| helicase SNF2 family protein [Verrucosispora maris AB-18-032]
          Length = 939

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 20/204 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           + +       A+   +  +L +     D  K  + V + K    E+ + K +    +V  
Sbjct: 393 RSKKATGTERAALY-RLAELTSAMTDSDSSKLRRLVEELK----EIGVGKGSDTRAVVFS 447

Query: 76  HFNSDLARLQKAFPQ-------------GRTLDKDPCTI-QEWN-EGKIPLLFAHPASCG 120
                +  L    P              G   D D   I QE+   G    L        
Sbjct: 448 ERVPTIKWLADTVPGLLGLKPDAVRVLHGGVADSDEQQILQEFELAGSGVRLLFTGDVAS 507

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    + L+ + + W L   +Q   RI    QR     RA+ +         D  V
Sbjct: 508 EGVNLHQQCHHLIHYDIPWSLIRIEQRNGRIDRYGQRHQPQFRALLLTSAREDAKDDRTV 567

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            + L  +       L +++  T H
Sbjct: 568 SEVLLRREETAHRTLGSVEAATGH 591


>gi|169600707|ref|XP_001793776.1| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
 gi|160705497|gb|EAT89929.2| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
          Length = 2117

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 35/157 (22%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            ++      +DE ++ LE +++        VAY     L   + A             I++
Sbjct: 1904 DQGVIFAPNDETVEILEEVLDSHG-----VAY---HSLRGCRGA--------TSAKIIED 1947

Query: 104  WNEGKIP-----LLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ------QMIERI 151
            +     P     +L  +  S    G NL    N L+F +      +++      Q I R+
Sbjct: 1948 FKTNDDPDDQSKVLILNMGSESAAGANL-VNANHLIFVAPLLAKTQYEYDSAMAQAIARL 2006

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                 R+    + V +Y++IAQ TID  +L+  R K 
Sbjct: 2007 -----RRYMQTKTVHIYHVIAQRTIDVDILE-HRHKR 2037


>gi|210610634|ref|ZP_03288534.1| hypothetical protein CLONEX_00724 [Clostridium nexile DSM 1787]
 gi|210152356|gb|EEA83362.1| hypothetical protein CLONEX_00724 [Clostridium nexile DSM 1787]
          Length = 560

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +  T  K      +   G++ +L       G G N+Q     L      W   + +Q   
Sbjct: 153 EAGTETKKAELFAKVRSGQVRVLLGSTPKLGAGTNIQDRLIALHHLDCPWKPADLEQQEG 212

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 213 RIL----RQGNQNKKVKIFRYVTENTFDAYMWQILENKQKFISQIMTS 256


>gi|302413908|ref|XP_003004786.1| hypothetical protein VDBG_04392 [Verticillium albo-atrum VaMs.102]
 gi|261355855|gb|EEY18283.1| hypothetical protein VDBG_04392 [Verticillium albo-atrum VaMs.102]
          Length = 81

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++    E   V R  + G KR V     I +N+ +E +++    K  +  L ++ 
Sbjct: 4   QYNPAAEAQAVDRVHRLGQKRPVQTVRYIMRNSFEEKMIELQDKKKKLASLSMDG 58


>gi|328859650|gb|EGG08758.1| hypothetical protein MELLADRAFT_84282 [Melampsora larici-populina
           98AG31]
          Length = 112

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +        + G GLN+    + +      W+ +  QQ ++R+      + G    V  +
Sbjct: 2   VEAFVVLIEAGGVGLNMTC-ADEVYSMDAHWNPQVVQQAVDRL-----YRIGQTMPVRAF 55

Query: 169 YLIAQNTIDELVL 181
           +++   +I++ + 
Sbjct: 56  HVVTGQSIEQHLY 68


>gi|167526014|ref|XP_001747341.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774176|gb|EDQ87808.1| predicted protein [Monosiga brevicollis MX1]
          Length = 951

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 54  EKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKA--FPQGRTL-----DKDPCTIQ 102
            K++A   +I+          ++V   ++  L    K       +TL      +    +Q
Sbjct: 644 AKLEAAVRLIKGLVKHEPSAKVLVFSQWHEVLQLFCKFAEHNGVQTLLMKSGQQGANEVQ 703

Query: 103 EWN-EGKIPLLFA--HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  + +I +L          +GL L    N ++      +     Q + R+      + 
Sbjct: 704 HFQHDAQIKVLCLRLSLHGGANGLTLT-AANHIILLDAELNPAMRAQALARVQ-----RV 757

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G  R   V+ L+ +++I+  +             ++   K
Sbjct: 758 GQARETHVHQLLIEDSIEMGIFTAAEELHGRGSEVMEGQK 797


>gi|148241137|ref|YP_001226294.1| SNF2 family DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147849447|emb|CAK26941.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp.
           RCC307]
          Length = 532

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 68  AAPIIVAYHFNS---DLARLQKAFPQGRTLDKDPCT--IQEWNEGKIPLLFAHPASCGHG 122
             P++V   F      L RL+        +D       +Q + +G   LL A     G G
Sbjct: 385 GDPVVVFSGFRGPLLQLHRLRGGELLTGLVDPAERLERLQRFQQGDSNLLLATYGVAGLG 444

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L LQ   + ++     W   + +Q  +R       + G +R V  ++L
Sbjct: 445 LGLQR-ASQVILLERPWTPGDAEQAEDRC-----HRFGTRRTVECHWL 486


>gi|330959670|gb|EGH59930.1| putative helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 554

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +   + + +  G+  +L     S   GL+ LQ   ++++   L W  + H+Q+  R+  
Sbjct: 427 KQKEESKRRFLAGESNVLILSLRSGA-GLDGLQARCSVVLHGELDWSPKVHEQVTGRLD- 484

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               + G    V   +LI+ +  D  +++ L  K+ 
Sbjct: 485 ----REGQPNPVLSIFLISADGSDPPIIELLGVKAA 516


>gi|94483747|gb|ABF22864.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94485765|gb|ABF24872.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94487385|gb|ABF26484.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94487994|gb|ABF27090.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
          Length = 631

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 27/223 (12%)

Query: 3   QYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y+ F+R L   +     ++ F    K  + L   + A         KE   + I     
Sbjct: 319 LYNDFKRSLRDREFSKSALDTF----KKGELLGGDSSAADISLFTELKEKSAKFIDVCLG 374

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWN-----EG 107
           I+       +   +   S +  L   F            RT D     + E+N      G
Sbjct: 375 ILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIKAVAEFNQESNTNG 434

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAV 165
           +        +S G G++     +I +   + W+    +Q++ R             +R V
Sbjct: 435 ECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRLNSHVLTPPERRYV 493

Query: 166 FVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 494 NVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|307277424|ref|ZP_07558517.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306505913|gb|EFM75090.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
          Length = 2266

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLARLQKAFPQG 91
            LQ +   ++ D         +   +  +++I+K      I   H   +D  R ++ F + 
Sbjct: 1852 LQHSTQIIFSDSGTPKSNQFNVYDEVKQLLIKKGIPEKEIAFIHSAKNDRQR-EELFEKV 1910

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R             +G+I +L       G G N+Q     +    + W   +  Q   RI
Sbjct: 1911 R-------------QGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQRDGRI 1957

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 RQ    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1958 V----RQGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|296446699|ref|ZP_06888639.1| helicase domain protein [Methylosinus trichosporium OB3b]
 gi|296255820|gb|EFH02907.1| helicase domain protein [Methylosinus trichosporium OB3b]
          Length = 1048

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 36/214 (16%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEVII---EKANA 68
           ++  + +A    ++  +   LA   V   +       +   D K + L   I   E A  
Sbjct: 707 VEAGDEDATEKLTEAER-RVLAAEEVDTIDAIVGAIARLPTDTKARQLVDEIRDLEAAGY 765

Query: 69  APIIVAYHFNSDLARLQ---------------------KAFPQGRTLDKDPCTIQEWNEG 107
             +IV   +   +  L+                     +A   G            + +G
Sbjct: 766 RQVIVFTQYTDTMDYLRDHLFDATGKVVMCFSGRGGEIRAHDGGWKQISREEVKARFKKG 825

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-AVF 166
              +L    A+   GLN Q+ G  L+ + + W+    +Q I RI      + G     + 
Sbjct: 826 AADVLVCTDAAA-EGLNFQFCGA-LINYDMPWNPMRVEQRIGRID-----RLGQSFADIR 878

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +  L  ++T++  V Q L+ + ++   ++  L+ 
Sbjct: 879 ITNLHYRDTVEADVYQALQQRISVFTNVVGGLQP 912


>gi|184155516|ref|YP_001843856.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183226860|dbj|BAG27376.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|299783290|gb|ADJ41288.1| Helicase [Lactobacillus fermentum CECT 5716]
          Length = 630

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K +    +I+K  +    ++V   F   + ++                          I 
Sbjct: 449 KFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPKQDREGMIN 508

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI         + 
Sbjct: 509 NFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPANQYT 568

Query: 163 RAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
           R    YYL+ +        ID +V ++L+ K  +   +L+A+  + +
Sbjct: 569 R---YYYLMTKGDVAHMGFIDRIVYKKLKDKEKV---MLDAIDGQLL 609


>gi|255973332|ref|ZP_05423918.1| SNF2 family protein [Enterococcus faecalis T1]
 gi|255964350|gb|EET96826.1| SNF2 family protein [Enterococcus faecalis T1]
          Length = 2266

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-NSDLARLQKAFPQG 91
            LQ +   ++ D         +   +  +++I+K      I   H   +D  R ++ F + 
Sbjct: 1852 LQHSTQIIFSDSGTPKSNQFNVYDEVKQLLIKKGIPEKEIAFIHSAKNDRQR-EELFEKV 1910

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R             +G+I +L       G G N+Q     +    + W   +  Q   RI
Sbjct: 1911 R-------------QGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQRDGRI 1957

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 RQ    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1958 V----RQGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|300777180|ref|ZP_07087038.1| res subunit family type III restriction enzyme [Chryseobacterium
            gleum ATCC 35910]
 gi|300502690|gb|EFK33830.1| res subunit family type III restriction enzyme [Chryseobacterium
            gleum ATCC 35910]
          Length = 1345

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T  +      ++N GKI ++     +   G+NLQ     L   SL ++    +Q+  R
Sbjct: 1024 ATTKSQRISIQNDFNIGKIKVIIGS-EAIQEGMNLQENTTDLYLLSLPYNFTTLRQVEGR 1082

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  RQ      V V +++  ++ID  +LQ+L++K   Q   L A+KK
Sbjct: 1083 A----WRQGNRHENVRVNFMLTNDSIDVFMLQKLQSK---QARYLEAMKK 1125


>gi|302797434|ref|XP_002980478.1| hypothetical protein SELMODRAFT_6816 [Selaginella moellendorffii]
 gi|300152094|gb|EFJ18738.1| hypothetical protein SELMODRAFT_6816 [Selaginella moellendorffii]
          Length = 89

 Score = 51.5 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++        +GLNL    + ++      +     Q I R+      + G +    V+  
Sbjct: 1   VMLLPIQHGANGLNLIEAQH-VILVEPLLNPAVEAQAINRV-----HRIGQRLKTLVHRF 54

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           I  NT++E + +  + K+ +
Sbjct: 55  IICNTVEENIYKMSQQKTNL 74


>gi|300791026|ref|YP_003771317.1| DNA/RNA helicase [Amycolatopsis mediterranei U32]
 gi|299800540|gb|ADJ50915.1| DNA/RNA helicase [Amycolatopsis mediterranei U32]
          Length = 608

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 20/145 (13%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWN-EGKIPLLFAH 115
             A     +V   F   ++ L+            G T D++   I  +  +    +L ++
Sbjct: 434 NSAQGRKTLVWASFVRSISTLETLLGDFRPAVVHGGTADREEQ-IDFFRSDPDCLVLISN 492

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA----VFVYYLI 171
           PA+ G G++L    +  V+    +      Q ++RI      + G        V V  L 
Sbjct: 493 PATLGEGISLHQVCHDAVYVDRDFQAGRFLQSLDRI-----HRLGLAPDTETRVTV--LA 545

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
            ++T+DE+V  RL  K      LL+
Sbjct: 546 TRHTVDEVVAMRLNEKLEFMGKLLD 570


>gi|320593748|gb|EFX06157.1| DNA repair protein rad5 [Grosmannia clavigera kw1407]
          Length = 457

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 44/169 (26%)

Query: 41  YYDEEKHWKEVHDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
           Y  E          K++AL   +         ++   +   L  +QK   Q         
Sbjct: 276 YTSEGTDDVVRLPSKVEALLLDLKSLPPNTKCLIFSAWRLTLDVIQKGLDQASIQSTRFD 335

Query: 95  -----DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW--------- 139
                      + ++ N+  I ++    +    G         +VF S  +         
Sbjct: 336 GEIPQKGRQAVVDKFRNDQNISVMLLTLSCGAVG--------QVVFCSPTFCSRMLTLCT 387

Query: 140 ----------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
                     +    +Q + RI      + G  + V      A+NT +E
Sbjct: 388 LQSESNRRDPNPTLEEQALARI-----HRLGQTKEVTTVRFFARNTFEE 431


>gi|195569075|ref|XP_002102537.1| GD19450 [Drosophila simulans]
 gi|194198464|gb|EDX12040.1| GD19450 [Drosophila simulans]
          Length = 85

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+ +  +Q  +RI      + G  +  F+Y  + Q+T+++ +      K  I  ++L
Sbjct: 5   DLHWNPQLERQAQDRI-----YRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 59


>gi|145345811|ref|XP_001417393.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577620|gb|ABO95686.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 2017

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 21/195 (10%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
                    + A +  ++        + ++  D          + I  +  I    +   I
Sbjct: 1830 CATRDTSVVTAVSLGTEASA----DSKSIKTDGGVGVHG--SKIIDIVAHIKSIPDDERI 1883

Query: 72   IVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIP------LLFAHPA 117
            +V   F   + ++  A  +             +    + E+ +  +       LL     
Sbjct: 1884 LVFVQFPDLMQQVSSALNEAGIKTLKLKGSVHQQTGALDEFQKENLKKDDARVLLLLSRD 1943

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                G NL    + +    L  +  +     E   + R R+ G +R V ++  IA++++D
Sbjct: 1944 ESASGANLTTANHAIFVHPLLTNTAQEYIASETQAIGRIRRYGQQREVRIWRFIARDSVD 2003

Query: 178  ELVLQRLRTKSTIQD 192
              +L   R    +Q+
Sbjct: 2004 SEIL-SQRAAGLMQN 2017


>gi|89097278|ref|ZP_01170168.1| helicase, SNF2 family protein [Bacillus sp. NRRL B-14911]
 gi|89088101|gb|EAR67212.1| helicase, SNF2 family protein [Bacillus sp. NRRL B-14911]
          Length = 847

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 80/208 (38%), Gaps = 33/208 (15%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW--KEVHDEKIKA----LEVIIEKANAA 69
            G+N      ++K  K L+ +  A    E   W    V+  K  A    +  I++K    
Sbjct: 622 SGDNDSYDQVSAKVRKELENSIHAATIGEVSEWDLASVNSPKFDAGIKLVIDIVKKHG-- 679

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW--NEGKIPLLFAHPA 117
            ++V   F + L ++ +   +          G   ++    I ++  N  +I +L ++P 
Sbjct: 680 KVVVWGLFVNTLNKITRVLNEKGINTKVIYGGTPREEREDIINKFKENTNEIQVLVSNPN 739

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQ-- 173
           + G  ++L    +  ++F   ++L    Q  +RI      + G    ++   YYL+    
Sbjct: 740 TLGESVSLHTIAHDAIYFEYNYNLTFMLQSRDRI-----HRLGLPESQSTRYYYLMTVSD 794

Query: 174 ----NTIDELVLQRLRTKSTIQDLLLNA 197
               N ID+ +  RL  K       ++ 
Sbjct: 795 REIYNFIDQKIYDRLAEKEMRMKEAIDG 822


>gi|92116907|ref|YP_576636.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91799801|gb|ABE62176.1| helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 928

 Score = 51.5 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ  G  L+   L W+    +Q I RI    QR+        +Y+  
Sbjct: 764 LIVATDAACEGLNLQTLG-TLINVDLPWNPSRLEQRIGRIKRFGQRRDRVDMLNLLYHGS 822

Query: 172 AQNTIDELVLQRLRTK 187
           AQ T+DE V  +L ++
Sbjct: 823 AQPTVDEKVYAKLSSR 838


>gi|2388586|gb|AAB71467.1| Similar to Saccharomyces RAD16 (gb|X78993) [Arabidopsis thaliana]
          Length = 822

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 15/97 (15%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI+AL      ++E+  +A  IV   F S L  +     +            T+   
Sbjct: 726 TSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAAR 785

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              I ++  +    +      + G  LNL    ++ V
Sbjct: 786 DTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVSV 822


>gi|222612948|gb|EEE51080.1| hypothetical protein OsJ_31779 [Oryza sativa Japonica Group]
          Length = 1417

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 35/156 (22%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
            DE  + +  +  K+  L  I+   +      +V     S L  ++    + +   K+   
Sbjct: 1098 DENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSKLQVNGKEGKY 1157

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               W +GK                             W+ ++      ER  +    + G
Sbjct: 1158 ---WKQGK----------------------------DWYRIDGSTPSSERQNLVE--RYG 1184

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V+ Y L+A  T++E + +R  TK  +   +++
Sbjct: 1185 QTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVD 1220


>gi|326387304|ref|ZP_08208914.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208485|gb|EGD59292.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 874

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D     ++ +   +  +L A   S   G+NLQ+  ++LV F L W+ +  +Q I R    
Sbjct: 398 DMKAAIVEAFKSDEKAILIA-TESGAEGINLQF-CSLLVNFDLPWNPQRVEQRIGRC--- 452

Query: 155 RQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V  ++   N  ++ + + L  K  + + +  A
Sbjct: 453 --HRYGQKIDVTVVNMLDLTNQTEQRIHELLSEKFHLFEGVFGA 494


>gi|224072879|ref|XP_002303924.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222841356|gb|EEE78903.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1333

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNEGKIPLL 112
            + +A    +I+   F   +  +++                       ++  +      + 
Sbjct: 1159 VNRAAMEKVIIFSQFLEHIHVIEQQLAFAGIKFAGMYSPMPQINKMKSLATFQHDATCMA 1218

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S   GL+L +  + +      WD    +Q+I R       + G  R + V  L  
Sbjct: 1219 LLMDGSAALGLDLSFVTH-VFLMEPIWDRSMEEQVISR-----AHRMGATRPINVETLAM 1272

Query: 173  QNTIDELVLQRLRTKS 188
            + TI+E +L+ L+   
Sbjct: 1273 RGTIEEQMLEFLQDAD 1288


>gi|99035906|ref|ZP_01314955.1| hypothetical protein Wendoof_01000201 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 73

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 28/50 (56%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E     R  + G +R V VY L++  T +E + + +++K  + +L +++
Sbjct: 1   MEAQATDRAYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKELANLTISS 50


>gi|146344261|ref|YP_001202117.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|146188073|emb|CAM96403.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 554

 Score = 51.1 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +   + + +  G+  +L     S   GL+ LQ   ++++   L W  + H+Q+  R+  
Sbjct: 427 KQKEESKRRFLAGESNVLILSLRSGA-GLDGLQARCSVVLHGELDWSPKVHEQVTGRLD- 484

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               + G    V   +L++++  D  +++ L  K+ 
Sbjct: 485 ----REGQPNPVLSIFLVSEDGSDPPIIELLGVKAA 516


>gi|116071773|ref|ZP_01469041.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116065396|gb|EAU71154.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 538

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLA----RLQKAFPQGRTLD-KDPCTIQEWNEG 107
           K+ A E ++ + +     +++   F + L     R+      GR    +   ++  + +G
Sbjct: 375 KLSAAEQLLYQLHQQGHAVVLFSAFIAPLQLLHQRIGGELMTGRQRPLERQQSVDRFQQG 434

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K   L A   +   G  L +    +V     W   + +Q  +R       + G    +  
Sbjct: 435 KSNCLLATYGTGSLGFTL-HRARHVVLLERPWTPGDLEQAEDRC-----HRLGMGDGLTC 488

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++L      D+LV   L +K+   ++LL
Sbjct: 489 HWLQL-GPADQLVDGLLASKAERIEVLL 515


>gi|305663150|ref|YP_003859438.1| helicase domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377719|gb|ADM27558.1| helicase domain protein [Ignisphaera aggregans DSM 17230]
          Length = 1004

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 30/159 (18%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQ 102
           D +++ +  +IE+       ++V   +      + +           +   +  +   I 
Sbjct: 412 DSRLRTVFRVIEEHVLRGEKVVVFTEYRDTAEYIYRQLSIEMPDIAKEAALITGERIEIP 471

Query: 103 EWNEGKIP--------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            W E + P               +         GLNLQ   NI++ +   W   + +Q +
Sbjct: 472 GWRERRNPDIEDLKKYLGQGRIKVVISTDVASEGLNLQV-ANIIINYEPTWSPIKIEQRL 530

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+      + G +R V  Y +      D+ VL  L  K
Sbjct: 531 GRVW-----RLGQERDVTSYTIFLDIRSDKDVLDILYKK 564


>gi|78183618|ref|YP_376052.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78167912|gb|ABB25009.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 531

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLA----RLQKAFPQGRTLD-KDPCTIQEWNEG 107
           K+ A E ++ + +     +++   F + L     R+      GR    +   ++  + +G
Sbjct: 368 KLSAAEQLLYQLHQQGHAVVLFSAFVAPLQLLHQRIGGELMTGRQRPLERQQSVDRFQQG 427

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K   L A   +   G  L +    +V     W   + +Q  +R       + G    +  
Sbjct: 428 KSNCLLATYGTGSLGFTL-HRARHVVLLERPWTPGDLEQAEDRC-----HRLGMGDGLTC 481

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           ++L      D+LV   L +K+   ++LL
Sbjct: 482 HWLQL-GPADQLVDGLLASKAERIEVLL 508


>gi|255084481|ref|XP_002508815.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524092|gb|ACO70073.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1733

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        +GLNL    + ++      D     Q ++R+      + G      V+  +
Sbjct: 1610 LLMPLRRGANGLNLTEAQH-VILLEPVLDPGAEAQAMKRVD-----RIGQTMPTCVHRFL 1663

Query: 172  AQNTIDELVLQRLRTKSTIQ 191
             Q T++E V +  R +    
Sbjct: 1664 LQGTVEENVQELSRRRREAA 1683


>gi|307110903|gb|EFN59138.1| hypothetical protein CHLNCDRAFT_137960 [Chlorella variabilis]
          Length = 1904

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +    A    GL L              +     Q   RI      + G  R   V  L+
Sbjct: 1806 VVMSTAGGAAGLTLT-AATTAFLLEPCLNPGLEAQAAARIW-----RLGQTRPTRVVRLL 1859

Query: 172  AQNTIDELVLQRLRTK 187
            A+++++  VL+  R K
Sbjct: 1860 AEHSVESAVLEVQRRK 1875


>gi|300022704|ref|YP_003755315.1| DEAD-like helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524525|gb|ADJ22994.1| DEAD-like helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 584

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +   ++Q + EG   L      S   GLN LQ+    +VF  L W  + H+Q   R
Sbjct: 436 ETPRQKKKSVQMFCEGHSNLFILSLRSGA-GLNGLQHRCRTIVFGELDWSPKVHEQCTGR 494

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      + G ++ V   YL A    D  ++  L  KS+    +++
Sbjct: 495 LD-----RPGQEQQVDEIYLHADGGSDPSMIGVLALKSSQSQGIVD 535


>gi|241601346|ref|XP_002405286.1| smarca4, putative [Ixodes scapularis]
 gi|215502512|gb|EEC12006.1| smarca4, putative [Ixodes scapularis]
          Length = 483

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G K  V V  L+  N+++E +L   + K  + + ++ A
Sbjct: 218 QAQDRAHRIGQKNEVRVLRLVTVNSVEERILAAAKYKLNLDEKVIQA 264


>gi|154274738|ref|XP_001538220.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414660|gb|EDN10022.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 996

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E   + R  +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 860 VEEQAIDRVHRLNQTVDVKIYKLTIKNTVEERIVGLQERKRELANATIEG 909


>gi|313115790|ref|ZP_07801236.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621890|gb|EFQ05399.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 605

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G + +L    A  G G N+Q     +    + W   +  Q   RI     RQ    + V
Sbjct: 242 SGDVRVLLGSTAKMGAGTNVQSRLVAVHHLDVGWKPSDMTQRNGRII----RQGNMNKEV 297

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  + + T D  + Q L  K      ++ +
Sbjct: 298 KVFNYVTEGTFDSYLFQTLENKQRFISQIMTS 329


>gi|226355509|ref|YP_002785249.1| hypothetical protein Deide_06480 [Deinococcus deserti VCD115]
 gi|226317499|gb|ACO45495.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 916

 Score = 51.1 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +   +++        L     +   GLNLQ   N L+   L W+    +Q   RI     
Sbjct: 744 ERQALKDQVRDGTVTLLVGTDAASEGLNLQRLSN-LINIDLPWNPTRLEQRKGRIQ---- 798

Query: 157 RQAGFKR-AVFVYYLIAQNTIDELVLQRLRTK 187
            + G K   + +Y +  Q +I++ V QRL  +
Sbjct: 799 -RIGQKHSTIRIYNMRYQGSIEDRVHQRLSER 829


>gi|116630085|ref|YP_815257.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854119|ref|ZP_04644466.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|116095667|gb|ABJ60819.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
 gi|238833195|gb|EEQ25485.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 630

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
           +  ++   K +    +I+K  +    ++V   F   + ++                    
Sbjct: 441 NLAKIESPKFELGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPK 500

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI   
Sbjct: 501 QDREGMINNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRL 560

Query: 155 RQRQAGFKRAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + R    YYL+ +        ID  V ++L+ K  +   +L+A+  + +
Sbjct: 561 GLSADQYTR---YYYLMTKGDVAHTGFIDSTVYKKLKDKEKV---MLDAIDGQLL 609


>gi|302797112|ref|XP_002980317.1| hypothetical protein SELMODRAFT_6818 [Selaginella moellendorffii]
 gi|300151933|gb|EFJ18577.1| hypothetical protein SELMODRAFT_6818 [Selaginella moellendorffii]
          Length = 89

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++        +GLNL    + ++      +     Q I R+      + G +    V+  
Sbjct: 1   VMLLPTQHGANGLNLIEAQH-VILVEPLLNPAVEAQAINRV-----HRIGQRLKTLVHRF 54

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           I +NT++E + +  + K+ +
Sbjct: 55  IIRNTVEENIYKMSQQKTNL 74


>gi|328722411|ref|XP_001942510.2| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 577

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I  L    +    GLNL      + F     +  +  Q I  I      + G  +  
Sbjct: 482 KKNINALLVKLSVGSKGLNLTE-ATRIFFMDPIINKADEHQAIGTI-----HRLGQTKPT 535

Query: 166 FVYYLIAQNTIDELV 180
           FV+  I +++I+E +
Sbjct: 536 FVHNFIIRDSIEENI 550


>gi|313115788|ref|ZP_07801235.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621895|gb|EFQ05403.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 881

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 14/161 (8%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDK 96
           K W+E  D+K+  L +  + +          ++    +L  A              T  K
Sbjct: 447 KIWEEGKDQKLTQL-LFCDLSTPKNDGNFNVYDDIRKKLVAAGVPENEIEFIHNADTEAK 505

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 +   G + +L    A  G G N+Q     +    + W   +  Q   RI     
Sbjct: 506 KAALFSKVRSGDVRVLLGSTAKMGAGTNVQSQLVAVHHLDVGWKPSDMTQRNGRII---- 561

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RQ    + V V+  + + T D  + Q L  K      ++ +
Sbjct: 562 RQGNMNKEVKVFNYVTEGTFDSYLFQTLENKQRFISQIMTS 602


>gi|302852672|ref|XP_002957855.1| hypothetical protein VOLCADRAFT_48760 [Volvox carteri f.
           nagariensis]
 gi|300256834|gb|EFJ41092.1| hypothetical protein VOLCADRAFT_48760 [Volvox carteri f.
           nagariensis]
          Length = 52

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            N +       D    QQ + R+      + G  R V V  L+   T++E+V++ L+
Sbjct: 1   ANHVFLLEPSLDPAIEQQAVARV-----HRIGQTREVTVTRLLVDGTVEEVVMRMLK 52


>gi|114320694|ref|YP_742377.1| helicase domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227088|gb|ABI56887.1| helicase domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 963

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R +D     ++ +       +     +   G+NLQ+  ++++ + L W+ +  +Q I R 
Sbjct: 487 RAIDARLALVEHF--RDNAKIMIATEAAAEGVNLQF-CSLVINYDLPWNPQRIEQRIGRC 543

Query: 152 GVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G +  V V   +  +N  D+ V + L  K ++ + L  A
Sbjct: 544 -----HRYGQQHDVIVVNFLNERNEADQRVHELLTEKFSLFNGLFGA 585


>gi|254572662|ref|XP_002493440.1| Putative helicase [Pichia pastoris GS115]
 gi|238033239|emb|CAY71261.1| Putative helicase [Pichia pastoris GS115]
 gi|328354735|emb|CCA41132.1| Uncharacterized ATP-dependent helicase YLR247C [Pichia pastoris CBS
            7435]
          Length = 1548

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 88   FPQGRTLDKDP-CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              +G   +K+    ++ +  +  I     +  +   GL L    + +       +     
Sbjct: 1387 LEKGSGRNKEKLTDVELFKSDPSITCFLLNARAQAAGLTLVNASH-VFLCEPLVNTALEL 1445

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q I RI      + G +    ++    ++T++E VL+    K  
Sbjct: 1446 QAISRI-----HRIGQQHKTTIWMFTIKDTVEESVLRLSTRKRM 1484


>gi|237746223|ref|ZP_04576703.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229377574|gb|EEO27665.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 1961

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-------------FPQGRTLDKDP 98
               K+     I +     P ++  H    +  L+K                     D+  
Sbjct: 1788 TSAKLDKAAEIADARKGKPGVIFAHNLETVENLKKRLESSGHRVVALTGHDSTSEKDRKR 1847

Query: 99   CTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 E  E K  +L A  A+   GLNLQ G   L+ +        H Q   RI      
Sbjct: 1848 LMFAPEKGEAKADILIASDAAA-TGLNLQRG-QWLLQYDTADTAMVHAQRNGRIF----- 1900

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V +  L+A +  +     RL  K  +++LL + ++
Sbjct: 1901 RTGQKNDVELMDLVADHPAERAARDRLARKYELRELLTSPME 1942


>gi|71003830|ref|XP_756581.1| hypothetical protein UM00434.1 [Ustilago maydis 521]
 gi|46096112|gb|EAK81345.1| hypothetical protein UM00434.1 [Ustilago maydis 521]
          Length = 1828

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 21/165 (12%)

Query: 39   AVYYDEEKHWKEVHDEKIKALE-VIIEKANAAP---IIVAYHFNSDLARLQKAFPQ---- 90
             V  D           KI  L   + E+    P    +V  H+   L   ++A  Q    
Sbjct: 1468 FVSMDGSGTVVGDWSGKISGLIVDLKERLAQDPTHKAVVFSHWPKMLTFAREALVQNGVS 1527

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHP---ASCGHGLNLQYGGNILVFFSLWWDLEE 143
                G    K    ++   +     +   P   ++   GL+L    ++        D   
Sbjct: 1528 AVVFGGNETKQAEALRAMRDDDHVHVILVPFRASAGAAGLSLT-SCDLAYLLEPALDTAL 1586

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              Q + RI      + G +R   +  +  ++TI++ V++    +S
Sbjct: 1587 EAQAVARI-----HRIGQRRETTIIRVKMKDTIEDAVMRIADERS 1626


>gi|284924503|emb|CBG37639.1| putative helicase [Escherichia coli 042]
          Length = 963

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +DK    I  + +  +I +      +   G+NLQ+  ++L+ +   W+ +  +Q I R  
Sbjct: 486 IDKRSALIDHFKDHAEIMIA---TEAAAEGVNLQF-CSLLINYDFPWNPQRIEQRIGRC- 540

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G K  V V   + Q N  D+ VL+ L  K ++ D +  A
Sbjct: 541 ----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|209515894|ref|ZP_03264756.1| helicase domain protein [Burkholderia sp. H160]
 gi|209503742|gb|EEA03736.1| helicase domain protein [Burkholderia sp. H160]
          Length = 939

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 87  AFPQGRTLDKDPCT-IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           A   G   D D  + ++ +   +  + +L     +   GLNL Y  + L  F L W L  
Sbjct: 439 AVLHGGLPDTDQQSLVERFGRKEDTLRVLLCSDVAS-EGLNLHYFCHRLAHFDLPWSLMV 497

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE------LVLQRLRTKST 189
            QQ   R+      + G K    + YL  + T++E       +L+ L+ K  
Sbjct: 498 FQQRNGRVD-----RYGQKHQPNILYLFTE-TVNERIRGDLRILEILQAKDD 543


>gi|159491184|ref|XP_001703553.1| SWI2/SNF2-like protein [Chlamydomonas reinhardtii]
 gi|158280477|gb|EDP06235.1| SWI2/SNF2-like protein [Chlamydomonas reinhardtii]
          Length = 1286

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 45/142 (31%)

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
           +++       L  +++              G    +    I ++N    P  +      +
Sbjct: 534 VLLFSTMTRALDVIEEYLDWRGFEFARLDGGTAAAERGQLIADFNSPDSPTFIFLLSLKA 593

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNLQ G     +                              V V+ L+   +I+ 
Sbjct: 594 GGVGLNLQAGT---AW------------------------------VVVFRLLTAASIEG 620

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +      K  + D  +  +++
Sbjct: 621 HIAAVAEDKRKLTDSSITGVRR 642


>gi|71007686|ref|XP_758137.1| hypothetical protein UM01990.1 [Ustilago maydis 521]
 gi|46097419|gb|EAK82652.1| hypothetical protein UM01990.1 [Ustilago maydis 521]
          Length = 1751

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 13/153 (8%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPI-IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
            KH + +     +  + +I  +    + +VA    ++  R  +    G+         +  
Sbjct: 1470 KHVQHILSTTGE--KSLIFSSFGRGLDVVAQSLTANGIRFVRVTGAGKLGGAASKVFRS- 1526

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +  + ++  H  +   GLNL    +I +      +  +  Q I R+      + G  + 
Sbjct: 1527 -DPNVHVMLLHSEAQSSGLNLLAASHIHIL-EPLLNTSQELQAIGRV-----HRIGQTKE 1579

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++    ++T++E +L     K   Q L L  
Sbjct: 1580 TRIWCYYVKDTVEERILALSAYK--GQSLYLEG 1610


>gi|291570552|dbj|BAI92824.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1182

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 70/214 (32%), Gaps = 43/214 (20%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP- 70
             DL   +       ++     QL + A     ++  +   D K + L  +IE     P 
Sbjct: 447 VVDLATASRTIQELQTEIEHLRQLEDLA-----QRVRQSGKDCKWEQLSQVIEGEFFTPK 501

Query: 71  ---------------IIVAYHFNSDLARLQKAF------PQGRT-------LDKDPCTIQ 102
                          +++       L  L+         P+           ++     +
Sbjct: 502 PHNSDGEIAPKTLPKLVIFTEHRDTLNYLRDRIRTLLGRPEAVVTIHGGMGREERKKAEE 561

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  +  I +L A   + G G+NLQ    ++V + L W+    +Q   RI      + G 
Sbjct: 562 AFKQDVNIQVLVA-TDAAGEGINLQR-AYLMVNYDLPWNPNRLEQRFGRI-----HRIGQ 614

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLL 194
                ++ L+A  T +  V   L  K  I Q  L
Sbjct: 615 TEVCHLWNLVAGETREGDVYLSLLRKLEIEQKAL 648


>gi|41057508|ref|NP_957981.1| transcription termination factor NPH-I [Bovine papular stomatitis
           virus]
 gi|41018824|gb|AAR98429.1| transcription termination factor NPH-I [Bovine papular stomatitis
           virus]
          Length = 638

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 92  RTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           RT D     +  +N        +I +      S   GL+     +I +   + W+    +
Sbjct: 416 RTRDTRAKLVDAFNACDNTDGERIKVCVFSL-SGTEGLSFLSINDIFIL-DMTWNEASLR 473

Query: 146 QMIERIGVTRQRQA--GFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++ R       +     +R V V++++A+      T+DE +L  ++ KS     L   L
Sbjct: 474 QIVGRAVRLNSHEMTPAERRYVNVHFVVARQDSGAATVDEDLLDLIKDKSRQFTQLFRVL 533

Query: 199 KKETI 203
           K+ ++
Sbjct: 534 KRSSL 538


>gi|312793798|ref|YP_004026721.1| helicase domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180938|gb|ADQ41108.1| helicase domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 889

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RA 164
           +GKI L+    A+   GLNLQ  G  L+   L W+    +Q   RI     R+ G +   
Sbjct: 744 DGKIRLMIGTDAAA-EGLNLQTLG-TLINVDLPWNPIRLEQRQGRI-----RRIGQQFDK 796

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V+VY L  +++I++ +   L  +
Sbjct: 797 VYVYNLRYKDSIEDKIHAVLSGR 819


>gi|218184670|gb|EEC67097.1| hypothetical protein OsI_33891 [Oryza sativa Indica Group]
          Length = 1143

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 35/156 (22%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
            DE  + +  +  K+  L  I+   +      +V     S L  ++    + +   K+   
Sbjct: 951  DENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSKLQVNGKEGKY 1010

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               W +GK                             W+ ++      ER  +    + G
Sbjct: 1011 ---WKQGK----------------------------DWYRIDGSTPSSERQNLVE--RYG 1037

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V+ Y L+A  T++E + +R  TK  +   +++
Sbjct: 1038 QTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVD 1073


>gi|22595781|gb|AAN02813.1| putative transcription termination factor [lumpy skin disease
           virus]
          Length = 635

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPASCGHGLN 124
            ++    F      +       RT +     + ++NE     G +  +     S G G++
Sbjct: 398 LLLYFSVFK-----ISYIEFSSRTKNTRVQMVSKFNEEVNTDGTVIKVCVFSLSGGEGIS 452

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V+++IA+     +T+D
Sbjct: 453 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVNTPKDRRYVNVHFIIARLSNGESTVD 511

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           + +L+ +RTKS     L   LK+ +I
Sbjct: 512 DDLLEIIRTKSKEFSQLFKVLKESSI 537


>gi|15150527|ref|NP_150522.1| LSDV088 putative transcription termination factor [Lumpy skin
           disease virus NI-2490]
 gi|15149099|gb|AAK85049.1| LSDV088 putative transcription termination factor [Lumpy skin
           disease virus NI-2490]
 gi|22595623|gb|AAN02656.1| putative transcription termination factor [Lumpy skin disease virus
           NW-LW]
          Length = 635

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPASCGHGLN 124
            ++    F      +       RT +     + ++NE     G +  +     S G G++
Sbjct: 398 LLLYFSVFK-----ISYIEFSSRTKNTRVQMVSKFNEEVNTDGTVIKVCVFSLSGGEGIS 452

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V+++IA+     +T+D
Sbjct: 453 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVNTPKDRRYVNVHFIIARLSNGESTVD 511

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           + +L+ +RTKS     L   LK+ +I
Sbjct: 512 DDLLEIIRTKSKEFSQLFKVLKESSI 537


>gi|148912965|ref|YP_001293279.1| hypothetical protein GTPV_gp084 [Goatpox virus Pellor]
          Length = 635

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPASCGHGLN 124
            ++    F      +       RT +     + ++NE     G +  +     S G G++
Sbjct: 398 LLLYFSVFK-----ISYIEFSSRTKNTRVQMVSKFNEEVNTDGTVIKVCVFSLSGGEGIS 452

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V+++IA+     +T+D
Sbjct: 453 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVNTPKDRRYVNVHFIIARLSNGESTVD 511

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           + +L+ +R KS     L   LK+ +I
Sbjct: 512 DDLLEIIRAKSKEFSQLFKVLKESSI 537


>gi|318043006|ref|ZP_07974962.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0101]
          Length = 515

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTI-QEW 104
            D K+ A   +++        ++V   F +       RL      GR    +   I   +
Sbjct: 356 ADYKLPAASALVQSLMGQGEAVVVFTAFVAAAELLHSRLGGVLLTGRQPPHERQAIVDRF 415

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+  LL A     G G  L +    +V     W   + +Q  +R       + G +  
Sbjct: 416 QAGEASLLIASFGVGGLGFTL-HRARHVVLLERPWTPGDAEQAEDRC-----HRIGMQGT 469

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  ++L      D++V   + +K+   + LL+
Sbjct: 470 LHCHWLQL-GVADQMVDDLIASKAARIEQLLS 500


>gi|312877331|ref|ZP_07737297.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795894|gb|EFR12257.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 889

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RA 164
           +GKI L+    A+   GLNLQ  G  L+   L W+    +Q   RI     R+ G +   
Sbjct: 744 DGKIRLMIGTDAAA-EGLNLQTLG-TLINVDLPWNPIRLEQRQGRI-----RRIGQQFDK 796

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           V+VY L  +++I++ +   L  +
Sbjct: 797 VYVYNLRYKDSIEDKIHAVLSGR 819


>gi|281191435|gb|ADA57129.1| DEAD-like helicase [Drosophila buzzatii]
          Length = 448

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 39/122 (31%), Gaps = 19/122 (15%)

Query: 51  VHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLD------------ 95
               KI     II +        IIV     + L  L K   +  T              
Sbjct: 325 TPSTKISRAIEIINEHVLLEKKKIIVVSQSVALLEILNKHLYKDSTRQLKIMTLTGRTPQ 384

Query: 96  -KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ-MIERIG 152
            K    I ++NE   P +L         GLNL  G   L+F  L W+     Q  I R+G
Sbjct: 385 HKIGELISDFNESVKPCILLISLKLAETGLNL-NGAKYLLFMDLHWNPHLEPQSAIHRLG 443

Query: 153 VT 154
             
Sbjct: 444 QQ 445


>gi|304395575|ref|ZP_07377458.1| helicase domain protein [Pantoea sp. aB]
 gi|304356869|gb|EFM21233.1| helicase domain protein [Pantoea sp. aB]
          Length = 954

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + +V F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKQQSPLRLLICSDVASEGINLHHLSHKMVHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQD 192
           + G K    + YL+ +        D  VLQ L  K     
Sbjct: 546 RYGQKHVPQIRYLLTEANEPQINGDMRVLQVLINKDEQAQ 585


>gi|256544993|ref|ZP_05472361.1| SNF2 domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399289|gb|EEU12898.1| SNF2 domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 46

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 26/40 (65%)

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K  V +++++ ++TIDE V + L  K+  Q  L++++K
Sbjct: 3   GQKETVVIHHILEKDTIDENVKKALERKNKTQATLIDSVK 42


>gi|254423590|ref|ZP_05037308.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196191079|gb|EDX86043.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1054

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA--SCGHGLNLQYGGNILVFF 135
            +   RL   +    + +++        + +I  +    A  +   GL+LQ   + L+ +
Sbjct: 552 KAGEERLMTLYGGMDSKEREQAKAAFQAKPEISPVRILLATDAASEGLDLQNHCSRLIHY 611

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            + W+    +Q   R+    QR       V +Y+ +A  
Sbjct: 612 EIPWNPNRMEQRNGRVDRHGQRA----DEVSIYHFVAAG 646


>gi|256763533|ref|ZP_05504113.1| predicted protein [Enterococcus faecalis T3]
 gi|307274366|ref|ZP_07555554.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|307287486|ref|ZP_07567534.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|256684784|gb|EEU24479.1| predicted protein [Enterococcus faecalis T3]
 gi|306501494|gb|EFM70795.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|306508959|gb|EFM78041.1| protein, SNF2 family [Enterococcus faecalis TX0855]
          Length = 620

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 26/163 (15%)

Query: 49  KEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA---------FPQGRT-LDK 96
           K     K+     +I+K +     +IV   F S +  L+K             G T LDK
Sbjct: 436 KIDSTSKMNTTMQLIQKLSGEHKKVIVWCIFISSIQLLEKKCQESGLKVVTIYGETPLDK 495

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+E+ +G   +L  +P +    ++L +  +  +++   ++L    Q  +RI     
Sbjct: 496 RLQLIEEYQQGYYDVLITNPHTLAESVSLHHFCHDAIYYEYSYNLVHLLQSKDRI----- 550

Query: 157 RQAGFK--RAVFVYYLIAQN-------TIDELVLQRLRTKSTI 190
            + G K  +    YY+ +Q        ++D  + +RL+ K  +
Sbjct: 551 HRLGLKDGQYTQYYYMESQYIYNDKIFSLDNRIYERLKEKEEV 593


>gi|145347265|ref|XP_001418094.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578322|gb|ABO96387.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1594

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 20/149 (13%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWNEGKIPLLFAHP 116
               I+   F   L  +  A    R              D++       N+    +L  + 
Sbjct: 996  KKCIIYSDFRPHLDTIDLALYGARVPHESITRIGQSRYDREQALKNFKNDPDCAVLLLN- 1054

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GL+L +  + +       ++   QQ+I R       + G K  V V      NT 
Sbjct: 1055 RAAAEGLDLSF-VSYVFLMEPLSNMSLEQQVISR-----AHRMGQKDTVRVKVFAMANTA 1108

Query: 177  DELVLQRLRT-KSTIQDLLLNALKKETIH 204
            +E++L            + L++L   T H
Sbjct: 1109 EEIMLDVQSELARNGTKMSLDSLDATTRH 1137


>gi|116201631|ref|XP_001226627.1| hypothetical protein CHGG_08700 [Chaetomium globosum CBS 148.51]
 gi|88177218|gb|EAQ84686.1| hypothetical protein CHGG_08700 [Chaetomium globosum CBS 148.51]
          Length = 1996

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 48   WKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLAR---------LQKAFPQGRTL 94
             +     K   +  +I  AN  P    ++V   +   +           +Q         
Sbjct: 1822 PQGEPLAKADRVAELI--ANQIPAEDFVVVFAQYRLVIDALAAAFTAAGIQFLNLAAVGD 1879

Query: 95   DKDPCTIQEWNEGKI-PLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQQM-IERI 151
            D     ++++  GK   +L     S    G NL    N +VF + +   ++  Q    R 
Sbjct: 1880 DDISAMLEKFKLGKAGRVLLLDMDSETSAGSNLTI-ANHVVFTNPYVHHDQEHQARTVRQ 1938

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               R  +    + V VY+ +   TI+E +L++
Sbjct: 1939 ARGRCIRTPQDKEVQVYHFMTSGTIEEEMLRK 1970


>gi|10957432|ref|NP_051666.1| ATP-dependent helicase HepA [Deinococcus radiodurans R1]
 gi|6460861|gb|AAF12565.1|AE001826_34 ATP-dependent helicase HepA [Deinococcus radiodurans R1]
          Length = 941

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 70/212 (33%), Gaps = 38/212 (17%)

Query: 5   HKFQRELYCDLQGENIEAF----------NSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +  REL  D +     A             +  T + L LA+ A             D 
Sbjct: 410 DRLGRELVLDPEEGEDSALDMTPGAQVDGEQSETTGRLLTLASRA------DALAGAKDN 463

Query: 55  KIKALEVIIEKANAAPI--IVAYHFNSDLA----RLQKAFPQGRTL--------DKDPCT 100
           K+K L   ++         IV   F +        L+ A      L        D+    
Sbjct: 464 KLKLLTAQVQGLVDQGFAPIVFCRFIATAEAVAEHLRGALKGSEVLAVTGRHTPDERVDR 523

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++E    +  +L A       G+NLQ   + ++ + L W+     Q   R+      + G
Sbjct: 524 VEELARAERRVLVA-TDCLSEGINLQAAFSAVIHYDLPWNPTRLDQREGRVD-----RYG 577

Query: 161 FKRA-VFVYYLIAQNT-IDELVLQRLRTKSTI 190
                V V  +  ++  ID L+L+ L  K  +
Sbjct: 578 QASPEVRVLTIYGEDNRIDTLILEVLVRKHRL 609


>gi|67479899|ref|XP_655331.1| helicase  [Entamoeba histolytica HM-1:IMSS]
 gi|56472459|gb|EAL49943.1| helicase domain-containing protein [Entamoeba histolytica
           HM-1:IMSS]
          Length = 858

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE-WNEGK 108
           L+ +++      ++V  H    L  +               G T  ++   + + + +  
Sbjct: 621 LDDVLDSGI-KKVVVFAHHRDVLDGIVYNLQRKKVQFIRIDGETKSENKKELVDIFRDDD 679

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVF 166
              +      +   GL  Q    + +F  + +   E  Q  +RI      + G +  +V 
Sbjct: 680 NCRVAVLSILAANCGLEFQKAA-LCIFAEMTFVPGEMLQAEDRI-----HRIGQQADSVK 733

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + YLIA  + DE +   +  K  +   +L+   +E  H
Sbjct: 734 IEYLIANKSYDEQIWNTIEKKLDVVGKVLDGKSRELDH 771


>gi|255283185|ref|ZP_05347740.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255266258|gb|EET59463.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 371

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--PQG 91
           Q A+G  Y    +   E    ++ AL  + EK     +I+ Y+F+ +   L   +     
Sbjct: 209 QQASGLCYV-LRRIVNEDVSRQV-ALLELFEKH--PRMIIFYNFDYEREILLNLYYGKDV 264

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +      Q        +      +   G N     + +VF+S  +  +  QQ   RI
Sbjct: 265 SVAEWTGHAHQPIPTTDSWVYLVQYTAGAEGWNCIR-TDTIVFYSQNYSYKVMQQACGRI 323

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                        ++ Y+L  ++ ID  + + L  K  
Sbjct: 324 DRLNT----PFTDLYFYHLKTRSGIDLAISKALEQKKK 357


>gi|167539868|ref|XP_001741391.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894093|gb|EDR22177.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 881

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEGK 108
           L+ +++      ++V  H    L  +               G T  ++    +  + +  
Sbjct: 644 LDDVLDSGI-KKVVVFAHHRDVLDGIVYNLQRKKVQFIRIDGETKSENKKEFVDIFRDDD 702

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVF 166
              +      +   GL  Q    + +F  + +   E  Q  +R+      + G +  +V 
Sbjct: 703 NCRVAVLSILAANCGLEFQKAA-LCIFAEMTFVPGEMLQAEDRL-----HRIGQQADSVK 756

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + YLIA  + DE +   +  K  +   +L+   +E  H
Sbjct: 757 IEYLIANKSYDEQIWNTIEKKLDVVGKVLDGKSRELDH 794


>gi|224139696|ref|XP_002323232.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867862|gb|EEF04993.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 803

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + R  Q G K  V +  LIA+N+I+E +L+    K    + 
Sbjct: 741 AINRVHQYGQKENVRIVRLIAKNSIEERILEMQERKKAANEA 782


>gi|329569081|gb|EGG50874.1| helicase protein [Enterococcus faecalis TX1467]
          Length = 2266

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     ++  +G+I +L       G G N+Q     +    + W   +  Q   RI    
Sbjct: 1902 QREELFEKVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQRDGRIV--- 1958

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             RQ    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1959 -RQGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|317139207|ref|XP_001817347.2| hypothetical protein AOR_1_462174 [Aspergillus oryzae RIB40]
          Length = 620

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             + L K    + ++   ++ L          GLNLQ   N +      W+     Q I 
Sbjct: 504 DAKILGKGQSPLHDFAWYRVVL-----DEGAFGLNLQ-SVNRVFIVEPQWNPSVESQAIA 557

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R       + G ++ V V     +N+I+E +  +   K  I  +
Sbjct: 558 R-----AIRLGQEQQVLVTRYRVENSIEEAMCSQQTHKLKISQM 596


>gi|302676628|ref|XP_003027997.1| hypothetical protein SCHCODRAFT_78900 [Schizophyllum commune H4-8]
 gi|300101685|gb|EFI93094.1| hypothetical protein SCHCODRAFT_78900 [Schizophyllum commune H4-8]
          Length = 1442

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              A  IV   +   L  LQ A  +       +D+     +   +  I +L  H      G
Sbjct: 1224 EGAKSIVFSAWADSLYILQNAMKENDIPCLRIDQADAANKFRTDPNIQVLLLHGERENAG 1283

Query: 123  LNLQYGGNI-----LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            LN+     +     +V            Q I RI      + G +R   V+   A++T++
Sbjct: 1284 LNVTCASRVFLLESVVHHG------FEIQAIARID-----RMGQQRPTEVFCYYAEDTVE 1332

Query: 178  ELVLQRLRTK 187
            + +L     K
Sbjct: 1333 KNILDLAAKK 1342


>gi|154279480|ref|XP_001540553.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412496|gb|EDN07883.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1296

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 51/166 (30%), Gaps = 48/166 (28%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR 92
             +K   +    K++ L+ ++   ++     ++       L  L++             G 
Sbjct: 989  PDKRLLQYDCGKLQQLDKLLRKLQSGGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGA 1048

Query: 93   TLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T  +    +  +  N+ +I        S                                
Sbjct: 1049 TKVEQRQMLTERFNNDTRILAFILSSRS-------------------------------- 1076

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  I++ TI+  +L++   K  + D+++ 
Sbjct: 1077 ---DRCHRIGQTRDVHIYRFISEYTIESNILRKANQKRMLDDVIIQ 1119


>gi|14600689|ref|NP_147209.1| hypothetical protein APE_0413 [Aeropyrum pernix K1]
 gi|5104053|dbj|BAA79369.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 1039

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 21/146 (14%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------------GRTLDKDPCTI 101
           + L    +   +   IV   F      L +   +                     +   I
Sbjct: 441 EELPDEFKDLASQKAIVFTEFKDTATYLYEKLRKWAEDEFGDPGIVRVFTSENRGEIEDI 500

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + W       +       G GLNLQY  N+++ + + W     +Q I R+      + G 
Sbjct: 501 KRWLSEDGRRVLVTTDVAGEGLNLQY-ANVIINYEITWSPIRLEQRIGRVW-----RYGQ 554

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTK 187
            +  +V+ L   + +++ V + +  K
Sbjct: 555 DKTTYVFNLFLADGLEKEVAETVFAK 580


>gi|160914103|ref|ZP_02076325.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
 gi|158433914|gb|EDP12203.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
          Length = 2685

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 5    HKFQRELYCDLQGENIEA-FNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             K  + ++CD+     +A  + A+KT     L    GAV   E++    V+D+  + L  
Sbjct: 2233 DKLTQLVFCDISTPQAKAPVSKAAKTLDNPLLHALEGAVPLPEQEPVFTVYDDIRQKLI- 2291

Query: 62   IIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                A   P   I   H  +   R ++ F + RT             G++ +L    A  
Sbjct: 2292 ----AQGMPADQIAFIHEANTEVRKKELFSKVRT-------------GQVRVLLGSTAKM 2334

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G N+Q     L      W   +  Q   RI    +RQ      V VY  + + T D  
Sbjct: 2335 GAGTNVQDRLVALHDLDCPWRPGDLAQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAY 2390

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 2391 LWQTVENKQKFISQIMTS 2408


>gi|94484360|gb|ABF23474.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94490004|gb|ABF29090.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
          Length = 631

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSAKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|62377|emb|CAA47600.1| nucleoside triphosphatase [Variola virus]
          Length = 537

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 268 KEKSAKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 327

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 328 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 386

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 387 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 442


>gi|5830662|emb|CAB54701.1| O1L protein [Variola minor virus]
          Length = 631

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSAKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|9627622|ref|NP_042145.1| hypothetical protein VARVgp101 [Variola virus]
 gi|6707760|sp|P33066|NTP1_VAR67 RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|297281|emb|CAA49042.1| N1L [Variola virus]
 gi|439019|gb|AAA60849.1| homolog of vaccinia virus CDS D11L (NTPase I); putative [Variola
           major virus]
 gi|94483952|gb|ABF23068.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94484155|gb|ABF23270.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94484564|gb|ABF23677.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94484762|gb|ABF23874.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94484960|gb|ABF24071.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94485158|gb|ABF24268.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94485360|gb|ABF24469.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94485563|gb|ABF24671.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94485968|gb|ABF25074.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94486169|gb|ABF25274.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94486372|gb|ABF25476.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94486575|gb|ABF25678.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94486777|gb|ABF25879.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94486980|gb|ABF26081.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94487183|gb|ABF26283.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94487589|gb|ABF26687.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94487790|gb|ABF26887.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94488197|gb|ABF27292.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94488397|gb|ABF27491.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94488597|gb|ABF27690.1| nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94488798|gb|ABF27890.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94488999|gb|ABF28090.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94489198|gb|ABF28288.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94489398|gb|ABF28487.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94489600|gb|ABF28688.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94489800|gb|ABF28887.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|94490209|gb|ABF29294.1| ATPase, nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109724144|gb|ABG43270.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109724348|gb|ABG43473.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109724550|gb|ABG43674.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109724755|gb|ABG43878.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109724958|gb|ABG44080.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109725162|gb|ABG44283.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109725367|gb|ABG44487.1| ATPase [Variola virus]
 gi|109725570|gb|ABG44689.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109725774|gb|ABG44892.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109725977|gb|ABG45094.1| ATPase [Variola virus]
 gi|109726181|gb|ABG45297.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109726384|gb|ABG45499.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|109726587|gb|ABG45701.1| ATPase nucleoside triphosphate phosphohydrolase-I [Variola virus]
 gi|745220|prf||2015436DN N1L gene
          Length = 631

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSAKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|332158843|ref|YP_004424122.1| putative deah atp-dependent helicase [Pyrococcus sp. NA2]
 gi|331034306|gb|AEC52118.1| putative deah atp-dependent helicase [Pyrococcus sp. NA2]
          Length = 964

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 32/200 (16%)

Query: 4   YHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y     E + +     E I    SA    K  Q+       D  K  +   D KI+ +  
Sbjct: 334 YDDIDLESFSEYDEIVEKIIGEYSAVLREK--QVKEFKELLDLLKRIRV--DSKIEVVAN 389

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP--------------CTIQEWN 105
           I++        +IV   F   L  L+    +   L++D                 I+++ 
Sbjct: 390 IVKNHVEKGEKVIVFTEFKDTLEYLRSKLSRLVGLNEDEVSILHGGMSSDKIREEIRKFE 449

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             GK   L         GLNLQ   ++L+ +   W   + +Q + R+      +   ++ 
Sbjct: 450 RNGK---LLISTDVASEGLNLQI-ASVLINYEAPWTPIKIEQRVGRVW-----RIDQEKD 500

Query: 165 VFVYYLIAQNTIDELVLQRL 184
           V  Y +     +D  VL  L
Sbjct: 501 VKAYTIFLDTEVDMYVLNNL 520


>gi|291530979|emb|CBK96564.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2949

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 5    HKFQRELYCDLQGENIEA-FNSASKT--VKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             K  + ++CD+     +A  + A+KT     L    GAV   E++    V+D+  + L  
Sbjct: 2497 DKLTQLVFCDISTPQAKAPVSKAAKTLDNPLLHALEGAVPLPEQEPVFTVYDDIRQKLI- 2555

Query: 62   IIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                A   P   I   H  +   R ++ F + RT             G++ +L    A  
Sbjct: 2556 ----AQGMPADQIAFIHEANTEVRKKELFSKVRT-------------GQVRVLLGSTAKM 2598

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G N+Q     L      W   +  Q   RI    +RQ      V VY  + + T D  
Sbjct: 2599 GAGTNVQDRLVALHDLDCPWRPGDLAQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAY 2654

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 2655 LWQTVENKQKFISQIMTS 2672


>gi|170664552|gb|ACB28709.1| m86L [Myxoma virus]
 gi|170664725|gb|ACB28881.1| m86L [recombinant virus 6918VP60-T2]
          Length = 632

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLN 124
            ++    FN     +       RT +    ++ E+N     +G +        S G G++
Sbjct: 397 LLLYFSAFN-----ISYIEFSSRTKNTRVQSVAEFNKRENTDGDLIKTCVFSLSGGEGIS 451

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V++++A+      T+D
Sbjct: 452 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVLTPEHRRYVNVHFIVARLSNGDATVD 510

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L  +RTKS     L    K  +I
Sbjct: 511 EDLLDIIRTKSKEFTQLFKVFKHTSI 536


>gi|113952800|ref|YP_729277.1| helicase [Synechococcus sp. CC9311]
 gi|113880151|gb|ABI45109.1| possible helicase [Synechococcus sp. CC9311]
          Length = 461

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 12/132 (9%)

Query: 69  APIIVAYHFNSDL----ARLQKAFPQGRTL-DKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            PI+V   F   L     RL      GR   D+    +  +  G+  LL A  A+ G G 
Sbjct: 314 KPIVVFSSFVDPLLLLHERLGGVLLTGRQKPDQRQFAVDCFQAGETDLLLATFAAGGLGF 373

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L    + +V     W   +  Q  +R       + G +  +  ++L      D+LV   
Sbjct: 374 TLHRSQD-VVLLERPWTPGDIDQAEDRC-----HRIGMEGGLTSHWLQL-GLADQLVDGL 426

Query: 184 LRTKSTIQDLLL 195
           + +K+   +LLL
Sbjct: 427 VASKAERIELLL 438


>gi|256271747|gb|EEU06784.1| Irc20p [Saccharomyces cerevisiae JAY291]
          Length = 1556

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|238596081|ref|XP_002393956.1| hypothetical protein MPER_06230 [Moniliophthora perniciosa FA553]
 gi|215462197|gb|EEB94886.1| hypothetical protein MPER_06230 [Moniliophthora perniciosa FA553]
          Length = 277

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 59/224 (26%)

Query: 6   KFQRELYCDLQGENIEAF------------NSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
           + + EL   L    ++              N+     +  +LAN  +      H   +  
Sbjct: 1   EMKAELSASLDRLELDDTDTNDTSHSLASRNAEVNATRESRLANPCL------HPIRISS 54

Query: 54  EKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEW 104
                L  II+     +     ++       LA + +          R   + P  ++E 
Sbjct: 55  SVSSKLNYIIDDVLRHSADEKYLIFSESELTLAHVAEGLQLAGVKFLRFTTQVPQQVREQ 114

Query: 105 ------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +          GLNL    + ++F    W  +   Q I+R       +
Sbjct: 115 CVLTFETSDLYRVFLMELKHGARGLNL-ITASRVIFCEPVWQADVESQAIKR-----AHR 168

Query: 159 AGFKRAV----FVYYLIA----------------QNTIDELVLQ 182
            G  R V     V+  I                 + T ++ +L+
Sbjct: 169 IGQTRPVHGEIIVHLQIWFSGDVHVNPLVKTLAIRGTAEDKMLE 212


>gi|311741611|ref|ZP_07715434.1| helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303275|gb|EFQ79355.1| helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1702

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKA-FPQGRTL------DKDPCTIQEWNEGKIPLLFAH 115
             +K    P      + +   +L +A   + R        +K      + N GK+ +L A+
Sbjct: 1186 CDKGVPKPDGSFSMYEAIRDQLVEAGMDKDRIRFIHDWDNKRTQLFDDCNNGKVDVLIAN 1245

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G G N+Q  G  +    + W   + +Q   R      RQ      V  Y  + + T
Sbjct: 1246 TTKLGTGANIQSRGVAIHHVDVPWRPADLEQQDGRFF----RQGNQNDEVARYTYVGRGT 1301

Query: 176  IDELVLQRLRTK 187
             D      +  K
Sbjct: 1302 YDGHSWATIERK 1313


>gi|9633722|ref|NP_051800.1| m86L [Myxoma virus]
 gi|11134117|sp|Q9Q8L4|NTP1_MYXVL RecName: Full=Nucleoside triphosphatase I; AltName: Full=M86L
           protein; AltName: Full=Nucleoside triphosphate
           phosphohydrolase I; Short=NPH I
 gi|6523941|gb|AAF14974.1|AF170726_90 m86L [Myxoma virus]
 gi|301134612|gb|ADK63726.1| m86L [Myxoma virus]
          Length = 632

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLN 124
            ++    FN     +       RT +    ++ E+N     +G +        S G G++
Sbjct: 397 LLLYFSAFN-----ISYIEFSSRTKNTRVQSVAEFNKRENTDGDLIKTCVFSLSGGEGIS 451

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V++++A+      T+D
Sbjct: 452 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVLTPEHRRYVNVHFIVARLSNGDATVD 510

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L  +RTKS     L    K  +I
Sbjct: 511 EDLLDIIRTKSKEFTQLFKVFKHTSI 536


>gi|259148229|emb|CAY81476.1| Irc20p [Saccharomyces cerevisiae EC1118]
          Length = 1556

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|217978103|ref|YP_002362250.1| helicase domain protein [Methylocella silvestris BL2]
 gi|217503479|gb|ACK50888.1| helicase domain protein [Methylocella silvestris BL2]
          Length = 949

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT D     +  + E K  ++ A   +   G+NLQ+  +++V F L W+ +  +Q I R 
Sbjct: 484 RTADIRAALVDYFRE-KAGIMIA-TEAAAEGINLQF-CSMVVNFDLPWNPQRIEQRIGRC 540

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                 + G +  V V   + + N  D+ V + L  K  +   +  A
Sbjct: 541 -----HRYGQRYDVVVVNFLNKNNAADQRVYELLAEKFKLFSGVFGA 582


>gi|151941083|gb|EDN59463.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1556

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|190405309|gb|EDV08576.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 1556

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|6323276|ref|NP_013348.1| Irc20p [Saccharomyces cerevisiae S288c]
 gi|74676414|sp|Q06554|IRC20_YEAST RecName: Full=Uncharacterized ATP-dependent helicase IRC20; AltName:
            Full=Increased recombination centers protein 20
 gi|662344|gb|AAB67400.1| Ylr247cp [Saccharomyces cerevisiae]
 gi|285813665|tpg|DAA09561.1| TPA: Irc20p [Saccharomyces cerevisiae S288c]
          Length = 1556

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|295099195|emb|CBK88284.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 3253

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L    A  G G N+Q     L      W   + QQ + RI     RQ      V
Sbjct: 2905 AGQVRVLLGSTAKMGAGTNVQDKLIALHDLDCPWRPSDLQQRLGRIV----RQGNENEEV 2960

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + + T D  + Q +  K      ++ +
Sbjct: 2961 EIYRYVTEGTFDAYLYQLVENKQKFIAQIMTS 2992


>gi|118098421|ref|XP_001234820.1| PREDICTED: E1A binding protein p400 [Gallus gallus]
          Length = 3075

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 66   ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFA 114
            +    +++       L  L+              +    ++    ++ +N  K I     
Sbjct: 1872 SEGRRVLILSQMILMLDILELFLNFHFLTFVRIDEYANHEQRQELMKSFNRDKRIFCAIL 1931

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               S   G+NL    + +VF+    +     +  E        + G  + + +Y L++ N
Sbjct: 1932 SSHSRSTGVNLVE-ADTVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHIYRLVSGN 1985

Query: 175  TIDELVLQ 182
            +++E +L+
Sbjct: 1986 SVEEKLLK 1993


>gi|303241443|ref|ZP_07327946.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302591052|gb|EFL60797.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 2215

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     +    G++ +L    +  G G N+Q     +      W   + +Q   
Sbjct: 1844 DAKTDEQRETLFERVRAGEVRILLGSTSKLGTGTNVQNKLIAVHHLDCPWRPSDIEQRDG 1903

Query: 150  RIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G +  V  ++  + + T D  + Q    K      ++  
Sbjct: 1904 RIL-----RQGNENPVVNIFRYVTKGTFDAYLWQIQEQKLKYISQVMTG 1947


>gi|242210463|ref|XP_002471074.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729864|gb|EED83731.1| predicted protein [Postia placenta Mad-698-R]
          Length = 833

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           K    ++++  G      L    A    G+NL     IL+     W  ++ QQ+I R+  
Sbjct: 348 KRAAMLKQFARGGRDGARLLILSAVGLVGVNLAI-ACILIIVDTLWSAQQDQQLIGRLW- 405

Query: 154 TRQRQAGFKRAVFVYYLIAQNTID 177
               +    + V VY LIA+NT D
Sbjct: 406 ----RDPQAKQVLVYRLIARNTSD 425


>gi|207342903|gb|EDZ70527.1| YLR247Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1556

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 47   HWKEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQKAFPQ------- 90
            H KE    KI  +  +I       E+ NA P  +I+       L  + K           
Sbjct: 1349 HIKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLA 1408

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T +          +  +  L  +  + G GLNL    +I +      +  +  Q +
Sbjct: 1409 CLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLL-DPILNNSDELQAM 1467

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R       + G     FV+  + +NT++E +L+
Sbjct: 1468 GR-----NNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|163816654|ref|ZP_02208017.1| hypothetical protein COPEUT_02844 [Coprococcus eutactus ATCC 27759]
 gi|158447911|gb|EDP24906.1| hypothetical protein COPEUT_02844 [Coprococcus eutactus ATCC 27759]
          Length = 1101

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T  +     + +N+GK+ +L       G G N+Q     +      W   +  Q   
Sbjct: 767 DAATDAQRKKIEKSFNDGKVRILIGSTMKLGIGANVQERLIAVHHLDQPWRPADMVQRQG 826

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST-IQDLL---LNALKKE 201
           RI     RQ      VF+Y  + +++ D    Q L  K   I   L   ++A+ +E
Sbjct: 827 RIL----RQGNLNSEVFIYRYVTESSFDSYTWQILENKQKFIAQFLSGTMSAVHRE 878


>gi|91974494|ref|YP_567153.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
 gi|91680950|gb|ABE37252.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
          Length = 924

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ  G  L+   L W+    +Q I RI    QR+        VY+  
Sbjct: 764 LVVATDAACEGLNLQTLG-TLINVDLPWNPSRLEQRIGRIKRFGQRRERVDMLNLVYHGS 822

Query: 172 AQNTIDELVLQRLRTK 187
            Q T+DE V Q+L ++
Sbjct: 823 QQLTVDEKVYQKLSSR 838


>gi|255725018|ref|XP_002547438.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240135329|gb|EER34883.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 1667

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 71   IIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEG-----KIPLLFA 114
            II+   +   L  +  A    R              +    I++          +     
Sbjct: 1458 IIIFSQWQDMLFIIGNALKDNRISYMGMNSSVNPDHRRKQLIEDEASYFKRHNGVTCFLL 1517

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   GL L    +I        ++    Q I RI      + G K+   V+    +N
Sbjct: 1518 DAKAQASGLTLTNATHI-FLCEPLVNISLELQAISRI-----HRIGQKKKTTVWMFAIEN 1571

Query: 175  TIDELVLQRLRTKS 188
            TI+E ++     K 
Sbjct: 1572 TIEESIIITSTDKR 1585


>gi|330990113|ref|ZP_08314093.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
 gi|329762801|gb|EGG79265.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
          Length = 1696

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 64   EKANAAPIIVAY-HFNSDLARL---QKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHP 116
            E A       AY     +L RL   ++     +   K     + +   N G+  +L    
Sbjct: 1297 ESALEKRGFSAYSWIRDELIRLGVPREQIAFMQHYKKSAAKQRLFADLNSGRRRILIGST 1356

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+ G G+N Q     L    + W + +  Q   RI    +RQ      + +Y    + ++
Sbjct: 1357 ATMGTGVNAQQRLKALHHLDVPWLVADIIQREGRI----ERQGNQNDEIEIYAYAQKGSV 1412

Query: 177  DELVLQRLRTKS 188
            D    Q L  K 
Sbjct: 1413 DATNWQMLERKQ 1424


>gi|257057475|ref|YP_003135307.1| DNA/RNA helicase, superfamily II, SNF2 family [Saccharomonospora
           viridis DSM 43017]
 gi|256587347|gb|ACU98480.1| DNA/RNA helicase, superfamily II, SNF2 family [Saccharomonospora
           viridis DSM 43017]
          Length = 960

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAY-------HFNSDLARLQKAFPQGRTL- 94
            E+      D  +K L  I + K +   ++V             +L R  +   +   L 
Sbjct: 445 AERRGAAKFDALLKHLADIGVGKGSDTRVVVFSERIQTLEWLRDELRRKLRLPDKAVQLL 504

Query: 95  -----DKD-PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                D+D    ++++      + +L A   +   GLNL    + LV + L W     QQ
Sbjct: 505 HAQLNDRDVQQVVEDFALEASPLRILLASDMAS-EGLNLHRQCHQLVHYDLPWSFIRIQQ 563

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNT---IDELVLQRLRTKSTIQDLLL 195
              RI    Q     +  +    L + +T    D  V+ +L  K    +  L
Sbjct: 564 RNGRIDRYLQE---HEPRITALALTSSDTDTVSDLRVVTKLLEKEHAANQAL 612


>gi|323450185|gb|EGB06068.1| hypothetical protein AURANDRAFT_7750 [Aureococcus anophagefferens]
          Length = 106

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 88  FPQGRTLDKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           F  G + +     I+ +  G         +      S   G+ L      +       D 
Sbjct: 11  FTGGTSANDRDKHIRTFQSGLGKRGAPATVFVITTRSGNVGITLT-AATRVYLMEPMLDP 69

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               Q   RI      + G  + V V     +NT++E +++ 
Sbjct: 70  GTEVQAAGRI-----HRLGQTKDVLVTRFCFKNTVEEDIVKL 106


>gi|160945895|ref|ZP_02093121.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443626|gb|EDP20631.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2701

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR--LQKAFP--------QGRTLDKDPCT 100
            + +  + ALE  I      P    Y    D+ +  + +  P        +  T  +    
Sbjct: 2275 LDNPTLHALEDAIPLDKPEPAFTVYE---DIRQKLIAQGMPADQIAFIHEANTEVRKKEL 2331

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              +   G++ +L       G G N+Q     L      W   + QQ   RI    +RQ  
Sbjct: 2332 FSKVRSGQVRVLLGSTQKMGAGTNVQDRLVALHDLDCPWRPGDLQQRKGRI----ERQGN 2387

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY  + + T D  + Q +  K      ++ +
Sbjct: 2388 QNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2424


>gi|38638515|ref|NP_943101.1| putative RNA polymerase [Pseudomonas sp. ND6]
 gi|237797144|ref|YP_002887434.1| putative RNA/DNA helicase [Pseudomonas fluorescens]
 gi|34335303|gb|AAP44201.1| putative RNA polymerase [Pseudomonas sp. ND6]
 gi|229424281|gb|ACQ63505.1| putative RNA/DNA helicase [Pseudomonas fluorescens]
          Length = 145

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ  G  L+   L W+     Q I RI    QR+      V +  L+ + T+DE + 
Sbjct: 6   GLNLQTLG-TLINVDLPWNPTRLGQRIGRIKRFGQRR----ETVDMLNLVFEQTVDEKIY 60

Query: 182 QRLRTKSTIQDLLLNAL 198
           +RL  +   +  L  +L
Sbjct: 61  ERLSERMKNRYDLFGSL 77


>gi|329113910|ref|ZP_08242678.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
 gi|326696776|gb|EGE48449.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
          Length = 1708

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 64   EKANAAPIIVAY-HFNSDLARL---QKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHP 116
            + + +     AY    S+L R+    +     +  DK    ++ +   N G+  +L    
Sbjct: 1297 QASQSKRGFSAYNWIRSELIRMGVPAEQIAFMQDYDKAAAKLRLFGDLNAGRKRILIGST 1356

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+ G G+N Q     L    + W + +  Q   RI     RQ      V +Y    Q ++
Sbjct: 1357 ATMGTGVNAQQRLKALHHLDVPWLVADIMQREGRIV----RQGNQHDEVEIYAYAQQGSV 1412

Query: 177  DELVLQRLRTK 187
            D    Q L  K
Sbjct: 1413 DATNWQLLERK 1423


>gi|114050465|dbj|BAF30951.1| putative RNA polymerase [uncultured bacterium]
          Length = 145

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ  G  L+   L W+     Q I RI    QR+      V +  L+ + T+DE + 
Sbjct: 6   GLNLQTLG-TLINVDLPWNPTRLGQRIGRIKRFGQRR----ETVDMLNLVFEQTVDEKIY 60

Query: 182 QRLRTKSTIQDLLLNAL 198
           +RL  +   +  L  +L
Sbjct: 61  ERLSERMKNRYDLFGSL 77


>gi|10956643|ref|NP_066779.1| putative methylase [Rhodococcus equi]
 gi|31983873|ref|NP_858481.1| hypothetical protein pREAT701_27 [Rhodococcus equi]
 gi|10657890|gb|AAG21729.1| putative methylase [Rhodococcus equi]
 gi|10801081|dbj|BAB16635.1| Putative methylase (or helicase) [Rhodococcus equi]
          Length = 3229

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F  D        P+ +        ++   +G+I +L       G GLN+Q     +V   
Sbjct: 2624 FMHDYDN-----PKAK-----AKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLD 2673

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              W   + +Q I RI     RQ      V V  ++A+ + D ++ Q +  K++
Sbjct: 2674 PAWTAADMEQRIGRII----RQGNVNETVSVVNMVARRSYDAMMYQYVARKAS 2722


>gi|78190759|gb|ABB29701.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Aphrocallistes vastus]
          Length = 430

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 14/95 (14%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCT--------IQEWN-E 106
           E +I   +   +++       L  +Q       PQ   L  D           +  +N +
Sbjct: 335 ETLIPSLSQHRVLIFCQLKHMLDLIQAMIGRDLPQLSYLRLDGSVPVQNRMNIVNTFNSD 394

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             I +L       G GL L  G ++++F    W+ 
Sbjct: 395 PSIDILLLTTHVGGLGLTLT-GADVVIFVDHDWNP 428


>gi|307110374|gb|EFN58610.1| hypothetical protein CHLNCDRAFT_140806 [Chlorella variabilis]
          Length = 248

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L        +GLNL    + +V      D     Q + R+      + G  RA  V+ 
Sbjct: 93  QVLLLLVKQGANGLNLTEAQH-VVLVEPQLDPAVEAQAVGRVD-----RIGQLRATHVHR 146

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + + T++E V +  + ++   DL   ++K
Sbjct: 147 FVVEKTVEENVHRLCQRRAAAMDLSAASVK 176


>gi|206890396|ref|YP_002248483.1| swi/snf family helicase_2 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742334|gb|ACI21391.1| swi/snf family helicase_2 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 540

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +      R  + G K+ VFV  L   NTI+E +   L  K  +   +++
Sbjct: 464 VAIQTEDRTHRIGQKKTVFVSSLFTVNTIEERIQNILNKKKQLFKEVID 512


>gi|226227641|ref|YP_002761747.1| hypothetical protein GAU_2235 [Gemmatimonas aurantiaca T-27]
 gi|226090832|dbj|BAH39277.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 588

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 111 LLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           +L     S   G++ LQ+    +VF  L W    H+Q   R+      +      V  YY
Sbjct: 461 VLIMSLRSGA-GVDGLQHACRTVVFGELDWSPGVHEQCAGRV-----HRDAQGEPVTAYY 514

Query: 170 LIAQNTIDELVLQRLRTKST 189
           + A +  D ++++ L  K +
Sbjct: 515 MCADDGADPIMIEVLGVKRS 534


>gi|119596380|gb|EAW75974.1| chromodomain helicase DNA binding protein 6, isoform CRA_a [Homo
           sapiens]
          Length = 952

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 832 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 891

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               + G G+NL    +  + F   W+ +   Q+  R+
Sbjct: 892 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQVTTRM 928


>gi|320284|pir||F36819 C14 protein - rabbit fibroma virus
          Length = 370

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLN 124
            ++    FN     +       RT +    ++ E+N     +G +        S G G++
Sbjct: 135 LLLYFSAFN-----ISYIEFSSRTKNTRVQSVAEFNKRENTDGDLIKTCVFSLSGGEGIS 189

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTID 177
                +I +   + W+    +Q+I R             +R V V++++A+      T+D
Sbjct: 190 FFSINDIFIL-DMTWNEASLRQIIGRAIRLNSHVLTPEHRRYVNVHFIVARLSNGDATVD 248

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L  +RTKS     L    K  +I
Sbjct: 249 EDLLDIIRTKSKEFTQLFKVFKHTSI 274


>gi|242765200|ref|XP_002340926.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724122|gb|EED23539.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2138

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 18/150 (12%)

Query: 54   EKIKALEVIIEKANAAP----IIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT 100
             K++AL  +++  ++ P    +I+   F  DL ++  A  +         G+T       
Sbjct: 1957 SKVEALIKLLKDESSIPKDDQVILFLQFQ-DLQQVVTAALELNDISYVSVGKTGKHGRGK 2015

Query: 101  IQEWNEG-KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQR 157
            +++++      +      +    GLNLQ   N ++FF+ +     ++ Q        R  
Sbjct: 2016 MKKFSANHDKKVAILQLGTENAAGLNLQN-ANHVIFFAPFAAKNHYEYQSTIAQSSGRVI 2074

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G K+ V ++ L   NT++  +LQ    +
Sbjct: 2075 RFGQKKKVHIWNLATLNTLEVGILQGQDGR 2104


>gi|227544299|ref|ZP_03974348.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|300909489|ref|ZP_07126950.1| SNF2 family helicase [Lactobacillus reuteri SD2112]
 gi|227185707|gb|EEI65778.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|300893354|gb|EFK86713.1| SNF2 family helicase [Lactobacillus reuteri SD2112]
          Length = 373

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K +    +I+K  +    ++V   F   + ++                          I 
Sbjct: 192 KFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPKQDREGMIN 251

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI         + 
Sbjct: 252 NFRIGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPANQYT 311

Query: 163 RAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
           R    YYL+ +        ID  V ++L+ K  +   +L+A+  + +
Sbjct: 312 R---YYYLMTKGDVAHMGFIDNTVYKKLKDKERV---MLDAIDGQLL 352


>gi|114567585|ref|YP_754739.1| hypothetical protein Swol_2075 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338520|gb|ABI69368.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 835

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 30/200 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + Q E+   L+ + + + +  +   + +QL  G +        K   + K+  L+  + 
Sbjct: 432 EEEQAEIIAQLE-DIVASVDPVALQEEIIQL--GRLINQALDLEKREAESKLIKLKDTLI 488

Query: 65  KAN-----AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG- 107
           +          +++       L  L                  +  D+D    + + E  
Sbjct: 489 QHGLFDDPKMKLLIFTEHKDTLTYLVGKLQDWGLTVTQIHGGMKIGDRDAPGTRIYAERE 548

Query: 108 ---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 ++ A   + G G+NLQ+    ++ + + W+    +Q + RI      + G  + 
Sbjct: 549 FREDCQVMVA-TEAAGEGINLQF-CWFMINYDIPWNPVRLEQRMGRI-----HRYGQGKD 601

Query: 165 VFVYYLIAQNTIDELVLQRL 184
             +   ++ NT +  VL +L
Sbjct: 602 CLILNFVSTNTREGRVLNKL 621


>gi|317490714|ref|ZP_07949177.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
 gi|316910184|gb|EFV31830.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
          Length = 2244

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T        +    G++ +L       G G N+Q     L      W   + +Q   
Sbjct: 1649 DAKTEKAKARLFEAARSGEVRVLMGSTQKLGEGTNVQTRLVALHHLDCPWRPSDLEQREG 1708

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI     RQ    + V +Y  + + T D  + Q +  K 
Sbjct: 1709 RIL----RQGNRNKEVGIYRYVTKGTFDSYMYQTVEHKQ 1743


>gi|300865065|ref|ZP_07109891.1| Helicase domain protein [Oscillatoria sp. PCC 6506]
 gi|300336929|emb|CBN55041.1| Helicase domain protein [Oscillatoria sp. PCC 6506]
          Length = 1050

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA--SCGHGLNLQYGGNILVFFSLWW 139
            RL   +    + D++        +  I  +    A  +   GL+LQ   + L+ + + W
Sbjct: 552 DRLMTLYGGMVSEDREKVKAAFQTDPDISPVRILLATDAASEGLDLQNYCSKLIHYEIPW 611

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +    +Q   RI   R  Q   +  V VY+ + ++
Sbjct: 612 NPNRMEQRNGRI--DRHGQKAQE--VLVYHFVGKD 642


>gi|253999373|ref|YP_003051436.1| DNA methylase N-4/N-6 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986052|gb|ACT50909.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
          Length = 838

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWNE 106
             +I     I+ +      IV +    +   +QKA P        + LD+    I E+++
Sbjct: 298 SARIAKAAEIVAQDPDDHFIVWHDLEDERHAIQKAIPNAVSVYGSQDLDEREKRIVEFSD 357

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L   P   G G N Q   +  +F  + +   +  Q I R+      +      V 
Sbjct: 358 GKFSVLSTKPIIAGSGCNFQRHCHREIFAGIGFKFNDFIQAIYRVQ-----RFQQTHQVR 412

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  + ++   +  VL  L+ K  +   +
Sbjct: 413 IDIIYSE--AEREVLASLKQKWELDKQM 438


>gi|119386548|ref|YP_917603.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377143|gb|ABL71907.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 636

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 32/195 (16%)

Query: 29  TVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEV--IIEKANAAPIIV-------AYH 76
           T+    +AN  V  D    ++   E H  K++A+         +    ++        + 
Sbjct: 401 TLALSAMANDDVKVDSAIVDQLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHS 460

Query: 77  FNSDLARLQKAFPQGRTLDKDPCT-------IQEW-NEGKIPLLFAHPASCGHGLNLQYG 128
           F S LA L   +  G      P         I+ +  +    +L A+PA+ G G++L   
Sbjct: 461 FVSALADLNPVYIHGGVPSGLPSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTV 520

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF--KRAVFVYYLIAQ-----NTIDELVL 181
            +  ++    +    + Q I+RI      + G        ++   ++      +ID  V 
Sbjct: 521 CHNAIYADRSYVSTHYLQSIDRI-----HRLGLAPDEETHIHIYRSKAPPVIGSIDMSVS 575

Query: 182 QRLRTKSTIQDLLLN 196
           +RL  K      LL+
Sbjct: 576 RRLVEKIRNMQQLLD 590


>gi|15921551|ref|NP_377220.1| hypothetical protein ST1287 [Sulfolobus tokodaii str. 7]
 gi|15622337|dbj|BAB66329.1| 543aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 543

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 22/179 (12%)

Query: 25  SASKTVKCLQLA----NGAV----YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
              K  + +QL     + A+     Y+E K    + + K+KAL+ II+K N   I++   
Sbjct: 360 GGKKVSELIQLVKEGNSNAIEAMKIYNEMKKIVNLAENKLKALDDIIQKENGNKILIFTQ 419

Query: 77  FNSDLARLQKAF----PQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +      + K +      G+T  ++    ++ +   K  +L         GL++      
Sbjct: 420 YVDQAEEIAKKYNAYLITGKTNKNEREKILRIFKTLKSGILVL-TTVGDEGLDIPDANVG 478

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++           +Q I+R+G  R  +    +   +Y ++ + T +E   Q  + K   
Sbjct: 479 IIVTG----TGSRRQFIQRLG--RLLRPSNGKVARLYEIVTRGTAEE--YQASKRKDIT 529


>gi|297718581|gb|ADI50196.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2934

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F  D        P+ +        ++   +G+I +L       G GLN+Q     +V   
Sbjct: 2343 FMHDYDN-----PKAK-----AKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLD 2392

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              W   + +Q I RI     RQ      V V  ++A+ + D ++ Q +  K++
Sbjct: 2393 PAWTAADMEQRIGRII----RQGNVNETVSVVNMVARRSYDAMMYQYVARKAS 2441


>gi|197313499|ref|YP_002149544.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092541|emb|CAQ30280.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F  D        P+ +        ++   +G+I +L       G GLN+Q     +V   
Sbjct: 2344 FMHDYDN-----PKAK-----AKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLD 2393

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              W   + +Q I RI     RQ      V V  ++A+ + D ++ Q +  K++
Sbjct: 2394 PAWTAADMEQRIGRII----RQGNVNETVSVVNMVARRSYDAMMYQYVARKAS 2442


>gi|258513251|ref|YP_003189507.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635154|dbj|BAI01128.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256638209|dbj|BAI04176.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-03]
 gi|256641263|dbj|BAI07223.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-07]
 gi|256644318|dbj|BAI10271.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-22]
 gi|256647373|dbj|BAI13319.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-26]
 gi|256650426|dbj|BAI16365.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-32]
 gi|256653417|dbj|BAI19349.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256656470|dbj|BAI22395.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-12]
          Length = 1708

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 64   EKANAAPIIVAY-HFNSDLARL---QKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHP 116
            + +       AY    S+L R+    +     +  DK    ++ +   N G+  +L    
Sbjct: 1297 QASQTKRGFSAYNWIRSELIRMGIPAEQIAFMQDYDKAAAKLRLFGDLNAGRKRILIGST 1356

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+ G G+N Q     L    + W + +  Q   RI     RQ      V +Y    Q ++
Sbjct: 1357 ATMGTGVNAQQRLKALHHLDVPWLVADIMQREGRIV----RQGNQHDEVEIYAYAQQGSV 1412

Query: 177  DELVLQRLRTK 187
            D    Q L  K
Sbjct: 1413 DATNWQLLERK 1423


>gi|88854171|gb|ABD52589.1| nucleoside triphosphatase 1 [Vaccinia virus]
 gi|167412619|gb|ABZ80053.1| nucleoside triphosphate phosphohydrolase-I [Vaccinia virus
           GLV-1h68]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|90660353|gb|ABD97467.1| ATPase [Cowpox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|113195295|ref|YP_717425.1| ATPase [Taterapox virus]
 gi|90660571|gb|ABD97684.1| ATPase [Taterapox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|44971468|gb|AAS49818.1| RPXV105 [Rabbitpox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|30519490|emb|CAD90665.1| E11L protein [Cowpox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|18640348|ref|NP_570504.1| CMLV114 [Camelpox virus]
 gi|18483024|gb|AAL73821.1|AF438165_111 putative NPH-I transcription termination factor [Camelpox virus
           M-96]
 gi|19718066|gb|AAG37591.1| CMP113L [Camelpox virus CMS]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|22164705|ref|NP_671618.1| EVM100 [Ectromelia virus]
 gi|22123846|gb|AAM92404.1|AF523264_100 EVM100 [Ectromelia virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNSMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|20178491|ref|NP_619912.1| CPXV128 protein [Cowpox virus]
 gi|20153109|gb|AAM13570.1|AF482758_121 CPXV128 protein [Cowpox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|62288378|gb|AAX78444.1| unknown [synthetic construct]
          Length = 657

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 388 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 447

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 448 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 506

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 507 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 562


>gi|6969769|gb|AAF33981.1| TD12L [Vaccinia virus Tian Tan]
          Length = 569

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 300 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 359

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 360 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 418

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 419 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 474


>gi|56713492|gb|AAW23532.1| hypothetical protein m8143R [Vaccinia virus]
 gi|56713776|gb|AAW23814.1| hypothetical protein mO143R [Vaccinia virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|66275913|ref|YP_232998.1| ATPase, nucleoside triphosphate phosphohydrolase-I, NPH-I [Vaccinia
           virus]
 gi|128591|sp|P05807|NTP1_VACCW RecName: Full=Nucleoside triphosphatase I; AltName: Full=Factor X;
           AltName: Full=Nucleoside triphosphate phosphohydrolase
           I; Short=NPH I
 gi|335655|gb|AAA48267.1| D11 (ATPase-4) [Vaccinia virus]
 gi|335724|gb|AAA48301.1| nucleoside triphosphatase I [Vaccinia virus]
 gi|29692222|gb|AAO89395.1| ATPase, nucleoside triphosphate phosphohydrolase-I, NPH-I [Vaccinia
           virus WR]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|128590|sp|P20637|NTP1_VACCC RecName: Full=Nucleoside triphosphatase I; AltName: Full=Factor X;
           AltName: Full=Nucleoside triphosphate phosphohydrolase
           I; Short=NPH I
 gi|335458|gb|AAA48110.1| putative D11L [Vaccinia virus Copenhagen]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|6707721|sp|O57214|NTP1_VACCA RecName: Full=Nucleoside triphosphatase I; AltName: Full=Factor X;
           AltName: Full=Nucleoside triphosphate phosphohydrolase
           I; Short=NPH I
 gi|2772712|gb|AAB96451.1| nucleoside triphosphate phosphohydrolase I, DNA helicase [Vaccinia
           virus]
 gi|37551561|gb|AAQ93213.1| ATPase [Vaccinia virus]
 gi|38348983|gb|AAR17959.1| ATPase [Vaccinia virus]
 gi|47088436|gb|AAT10506.1| ATPase [Vaccinia virus]
 gi|88900734|gb|ABD57646.1| VACV112 [Vaccinia virus]
 gi|90819776|gb|ABD98586.1| VACV-DUKE-124 [Vaccinia virus]
 gi|111184303|gb|ABH08223.1| HSPV117 [Horsepox virus]
 gi|160857998|emb|CAM58286.1| early gene termination factor/Nucleoside triphosphatase I [Vaccinia
           virus Ankara]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + +++KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQSKSKEFVQLFRVFKHTSL 536


>gi|326474050|gb|EGD98059.1| hypothetical protein TESG_05451 [Trichophyton tonsurans CBS 112818]
          Length = 388

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 15/108 (13%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC 99
             K++A+++ +    +++    I +   F   +  +         +     G+   +   
Sbjct: 195 SAKLRAVKLFVSKWLKESPNIKITIFTQFLGMIGAISSICEAEGWRYTTLCGKLHHRTRH 254

Query: 100 T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             I+ + E  + +L +   + G GLNL    +  +   LWW+    QQ
Sbjct: 255 ANIKRFREENVSILISSLKAGGVGLNLTM-ASKCILVDLWWNEAIEQQ 301


>gi|78190607|gb|ABB29625.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Priapulus caudatus]
          Length = 429

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 55/194 (28%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASK--------TVKCLQLANGAVYYDEEKHW--KE 50
           ++ Y  F +     +  E     + A++             ++ N  +   +  H   ++
Sbjct: 236 VQLYEDFAKSR-ARVDAEEQMGASEAARPHSHVFQCLQYLRKVCNHPLLVLQPDHPLYRQ 294

Query: 51  VHDE---------------KIKALEVII--------EKA------NAAPIIVAYHFNSDL 81
           + D+               K+ AL  ++        E+A           +V   F S L
Sbjct: 295 IADQLDRTATSLCSLQHSGKLVALRQLLQDCGIGVGERAPAEAVVGEHRALVFCQFKSML 354

Query: 82  ARLQKAFPQ------------GRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQY 127
             ++K   +            G        +I  +  N+  I +L       G GLNL  
Sbjct: 355 DIVEKHLLKPHMPSLTYLRLDGSIPAGSRHSIVNRFNNDPSIDVLLLTTHVGGLGLNLT- 413

Query: 128 GGNILVFFSLWWDL 141
           G + ++F    W+ 
Sbjct: 414 GADTVIFVEHDWNP 427


>gi|302554851|ref|ZP_07307193.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472469|gb|EFL35562.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 984

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 34/198 (17%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
            D+     E+ ++ ++ ++  Q A   V   E        D K+KAL   ++   +    
Sbjct: 441 MDVAPGAAESEDAGARLLELAQRAEQLVGPAE--------DAKLKALTRHLKGLISEGYH 492

Query: 71  IIVAYHFNSDLARLQKAF------------------PQGRTLDKDPCTIQEWNEGKIPLL 112
            IV   +      L +                    PQ R    +    +    G  P +
Sbjct: 493 PIVFCRYIPTADYLAEQLDGKLGKKTKIAAVTGTLSPQQRLERIEQLATEAAEAGDDPAV 552

Query: 113 ---FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G+NLQ+  + +V + L W+   H Q   R+    Q++    R + +Y 
Sbjct: 553 RRVLIATDCLSEGVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQKRD-QVRVITMYG 611

Query: 170 LIAQNTIDELVLQRLRTK 187
               N ID  VL+ L  K
Sbjct: 612 --EDNGIDGKVLEVLFKK 627


>gi|196048388|ref|ZP_03115564.1| SNF2 family protein [Bacillus cereus 03BB108]
 gi|196020821|gb|EDX59552.1| SNF2 family protein [Bacillus cereus 03BB108]
          Length = 2366

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 21/162 (12%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            ASK  K  Q+    ++ D         +   +    +IEK      I   H         
Sbjct: 1710 ASKENKSTQM----IFSDSGTPKTGQFNVYDEIKRQLIEKGIPENEIAFIH--------- 1756

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +T  +      +  +G + +L    +  G G N+Q     +      W   +  
Sbjct: 1757 ----DAKTDKQRDVLFDKVRKGDVRVLLGSTSKVGTGTNVQDKLLAVHHIDCPWRPSDLT 1812

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            Q   RI     RQ      V +Y  + +N+ D  + Q    K
Sbjct: 1813 QRDGRIV----RQGNENSEVQIYRYVTKNSFDSYLWQIQEQK 1850


>gi|197313568|ref|YP_002149612.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092610|emb|CAQ30352.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F  D        P+ +        ++   +G+I +L       G GLN+Q     +V   
Sbjct: 2344 FMHDYDN-----PKAK-----AKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLD 2393

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              W   + +Q I RI     RQ      V V  ++A+ + D ++ Q +  K++
Sbjct: 2394 PAWTAADMEQRIGRII----RQGNVNETVSVVNMVARRSYDAMMYQYVARKAS 2442


>gi|51342268|gb|AAU01312.1| MPXV-WRAIR102 [Monkeypox virus]
 gi|58220572|gb|AAW67860.1| MPXV-SL-102 [Monkeypox virus]
 gi|59858908|gb|AAX09203.1| MPXV-COP-102 [Monkeypox virus]
 gi|68448784|gb|AAY96907.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|68449386|gb|AAY97506.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|68449586|gb|AAY97705.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
          Length = 631

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGECIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + ++ KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQNKSKEFVQLFRVFKHTSL 536


>gi|114567522|ref|YP_754676.1| hypothetical protein Swol_2010 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338457|gb|ABI69305.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1144

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 30/200 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + Q E+   L+ + + + +  +   + +QL  G +        K   + K+  L+  + 
Sbjct: 432 EEEQAEIIAQLE-DIVASVDPVALQEEIIQL--GRLINQALDLEKREAESKLIKLKDTLI 488

Query: 65  KAN-----AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG- 107
           +          +++       L  L                  +  D+D    + + E  
Sbjct: 489 QHGLFDDPKMKLLIFTEHKDTLTYLVGKLQDWGLTVTQIHGGMKIGDRDAPGTRIYAERE 548

Query: 108 ---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 ++ A   + G G+NLQ+    ++ + + W+    +Q + RI      + G  + 
Sbjct: 549 FREDCQVMVA-TEAAGEGINLQF-CWFMINYDIPWNPVRLEQRMGRI-----HRYGQGKD 601

Query: 165 VFVYYLIAQNTIDELVLQRL 184
             +   ++ NT +  VL +L
Sbjct: 602 CLILNFVSTNTREGRVLNKL 621


>gi|319788873|ref|YP_004090188.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315450740|gb|ADU24302.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 2936

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +         ++  +G+   + A  +  G G N+Q     +    + W   +  Q   
Sbjct: 2543 DAKNDKARAEMFEQLRQGEKRFILASTSKLGTGANIQDRICAIHHLDIPWKPADLTQQDG 2602

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ    + V +Y+ + +NT D  ++  +  K+   + ++ +
Sbjct: 2603 R----GVRQGNMFKEVGIYHYLTENTFDAYMMGIITNKAKFINQIMTS 2646


>gi|284053397|ref|ZP_06383607.1| helicase domain protein [Arthrospira platensis str. Paraca]
          Length = 759

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               K     +   +  I +L A   + G G+NLQ    ++V + L W+    +Q   RI
Sbjct: 268 EERKKAEEAFK--QDVNIQVLVA-TDAAGEGINLQR-AYLMVNYDLPWNPNRLEQRFGRI 323

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-QDLL 194
                 + G      ++ L+A  T +  V   L  K  I Q  L
Sbjct: 324 -----HRIGQTEVCHLWNLVAGETREGDVYLSLLRKLEIEQKAL 362


>gi|296450799|ref|ZP_06892550.1| SNF2 family protein [Clostridium difficile NAP08]
 gi|296260360|gb|EFH07204.1| SNF2 family protein [Clostridium difficile NAP08]
          Length = 541

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++  L    A  G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 168 SGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVGWKPSDLEQREGRII----RQGNRNKKV 223

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y  + + T D  + Q + +K      ++ +
Sbjct: 224 HIYRYVTEGTFDSYMWQLIESKQKFISQIMTS 255


>gi|325073684|gb|ADY76737.1| PP62 [Orf virus]
          Length = 638

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 92  RTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           RT D     +  +N        KI +      S   GL+     +I +   + W+    +
Sbjct: 416 RTRDTRAKLVDAFNACDNTDGEKIKVCVFSL-SGSEGLSFLSINDIFIL-DMTWNEASLR 473

Query: 146 QMIERIGVTRQRQAG--FKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   L
Sbjct: 474 QIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLALIRDKSRQFTQLFRVL 533

Query: 199 KK 200
           K+
Sbjct: 534 KR 535


>gi|41057135|ref|NP_957849.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|41018559|gb|AAR98167.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|41018692|gb|AAR98297.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|74230784|gb|ABA00589.1| NPH-1 [Orf virus]
          Length = 638

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 92  RTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           RT D     +  +N        KI +      S   GL+     +I +   + W+    +
Sbjct: 416 RTRDTRAKLVDAFNACDNTDGEKIKVCVFSL-SGSEGLSFLSINDIFIL-DMTWNEASLR 473

Query: 146 QMIERIGVTRQRQAG--FKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   L
Sbjct: 474 QIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLALIRDKSRQFTQLFRVL 533

Query: 199 KK 200
           K+
Sbjct: 534 KR 535


>gi|303274797|ref|XP_003056713.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461065|gb|EEH58358.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 81

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +L  H  +   GL L    ++++    +    +  Q   R+      + G  R V
Sbjct: 1   DPDVKVLLLHAGTAAAGLTLTQ-ADLVILLEPFLSPGDEAQAANRV-----HRIGQTRPV 54

Query: 166 FVYYLIAQNTIDELVLQ 182
                   +T++E +L 
Sbjct: 55  RCVTYYVSDTVEERLLA 71


>gi|116179502|ref|XP_001219600.1| hypothetical protein CHGG_00379 [Chaetomium globosum CBS 148.51]
 gi|88184676|gb|EAQ92144.1| hypothetical protein CHGG_00379 [Chaetomium globosum CBS 148.51]
          Length = 283

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 45  EKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDL---ARLQK-------AFPQG 91
           ++  K  +  K++ L  +   I       I++  ++ S L    RL +            
Sbjct: 161 DRDIKPWYSGKMQVLARMLARIRADTNDKIVLISNYTSTLDLFERLCRSNNYGCLRLDGS 220

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
             ++K    + ++N+   P  +      + G GLNL  G N LV F  
Sbjct: 221 MNVNKRQKLVDKFNDPDGPEFVFLLSSKAGGCGLNL-IGANRLVLFDP 267


>gi|298241002|ref|ZP_06964809.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297554056|gb|EFH87920.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 949

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPC---TIQE 103
           DEK++    ++     +    IV   F          L++  P+   ++        ++ 
Sbjct: 467 DEKLQQAIKMVSGMLKDGFQPIVFCRFIPTAEYVARALRERLPKSVQVEAVTGLLPPVER 526

Query: 104 WNEGKIPLLFAHPASC-------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            N  +I  L AHP            G+NLQ   N ++ + L W+   H+Q   R  V R 
Sbjct: 527 EN--RIAELGAHPQRVLVCTDCLSEGINLQEHFNAVIHYDLSWNPTRHEQREGR--VDRF 582

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            Q      V  YY  + ++ID++VL  L  K   
Sbjct: 583 GQPAKDVRVVTYYDGSSDSIDQIVLDVLLRKHNS 616


>gi|198475821|ref|XP_002132503.1| GA27713 [Drosophila pseudoobscura pseudoobscura]
 gi|198137974|gb|EDY69905.1| GA27713 [Drosophila pseudoobscura pseudoobscura]
          Length = 163

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 27/100 (27%)

Query: 100 TIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            I+ +N     +  +      + G G+NL  G N ++     W+    QQ I R      
Sbjct: 1   MIKRFNSEVNKRARVFLISARAGGQGINL-IGANRVIILDTSWNPSNDQQNIFR------ 53

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                             T++E V  R  TK  +   +++
Sbjct: 54  -----------------GTMEEKVYSRSVTKQAMSFRVVD 76


>gi|150866404|ref|XP_001385990.2| hypothetical protein PICST_36839 [Scheffersomyces stipitis CBS 6054]
 gi|149387660|gb|ABN67961.2| hypothetical protein PICST_36839 [Scheffersomyces stipitis CBS 6054]
          Length = 1761

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 25/146 (17%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFP-----------------QGRTLDKDPCTIQEW 104
            I  +   A I+V   +   L  L  AF                   G    K   +++ +
Sbjct: 1527 IRSQNPDAQIVVFSQWQDMLYILGTAFKAADISYLGSYGTLTPDIGGGRRIKKYDSVETF 1586

Query: 105  NEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +   KI     +  +   GL L    +I        +     Q I RI      + G  
Sbjct: 1587 KDPRNKITCFLLNAKAQASGLTLINATHI-FLCEPLVNTSLELQAISRI-----HRIGQT 1640

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKS 188
            +   V+    +NT++E ++     K 
Sbjct: 1641 KPTTVWMFAIENTVEESIVIMSTGKR 1666


>gi|321476508|gb|EFX87468.1| hypothetical protein DAPPUDRAFT_96517 [Daphnia pulex]
          Length = 325

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVF 134
             D+  L+       T++K       +N+    +  +      + G G+NL    N ++ 
Sbjct: 250 KLDVDYLR--MDGHTTVEKRNSDCNMFNDPMNIRARVFLISTKAGGMGINLT-AANRVII 306

Query: 135 FSLWWDLEEHQQMIERIGV 153
           F   W+     Q I R+  
Sbjct: 307 FDASWNPSHDIQSIFRVYR 325


>gi|295673276|ref|XP_002797184.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
 gi|226282556|gb|EEH38122.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
          Length = 2095

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 25/170 (14%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLAR----------LQKAFPQ 90
             + W+     K   L  ++   +  P    +++   F  DL +          +      
Sbjct: 1897 NEQWQVYGGTKFLELIRLVRNTDKIPADERVLLFIQF-PDLMKAASAALGKANIPHLMIP 1955

Query: 91   GRTLDKDPCTIQEWNEG---KIPLLFAHPAS-CGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       +   E    K  +L  H       GLNLQ   N ++FF   +   ++  
Sbjct: 1956 VNDRMASSKITEFQTETEKVKSKVLILHLGDVSASGLNLQN-ANHVIFFHPLFAKSQYDY 2014

Query: 147  MIE-RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT----KSTIQ 191
                   + R R+ G ++ V +Y  +A  TI+  + +  R     K   Q
Sbjct: 2015 TSGMAQAIGRSRRYGQQKHVHIYQFLALKTIEVNIFEHRRRERLVKRDGQ 2064


>gi|327409943|ref|YP_004347363.1| putative helicase [Lausannevirus]
 gi|326785117|gb|AEA07251.1| putative helicase [Lausannevirus]
          Length = 587

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWN 105
            KI+ ++ II+  NA  +++     S    +++   +                  I E+ 
Sbjct: 469 TKIEHIQEIIKDENAH-VLIFSSHESSFEGVERILNEMGIKFGMIKGHKSVRERVIAEFM 527

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            GK+ ++  +      G++LQ   ++++       ++++   I R  + R ++ G    V
Sbjct: 528 TGKLRVVLVNAKFNASGIDLQKANHVVLLH----AMKDY---IRRQAIGRAQRLGRNEPV 580

Query: 166 FVY 168
            V+
Sbjct: 581 LVH 583


>gi|260905074|ref|ZP_05913396.1| putative helicase [Brevibacterium linens BL2]
          Length = 1033

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---- 98
           E +     +   +  L+ I I   +    ++     + L  LQ    Q   L  D     
Sbjct: 463 ENRQQTGKYGALLDYLKEIGIGPKSDTRAVIFAERVATLHALQADLTQDLKLKDDQVAIL 522

Query: 99  ----------CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       ++ + +   P+ +         G+NL    + LV F + W L   +Q 
Sbjct: 523 HGGLSDVEQQDVVESFKKKSSPIRVLVTGDLASEGVNLHSQCHELVHFDIPWSLIRIEQR 582

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             RI    Q Q      + +     + + D  VL++L  K  
Sbjct: 583 NGRIDRYGQTQRPQITTLVLQPDSERFSGDIRVLKKLIEKEN 624


>gi|115401368|ref|XP_001216272.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190213|gb|EAU31913.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 962

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 21/124 (16%)

Query: 43  DEEKHWKE-----VHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARL-----QKAF 88
           D EK W +     +   K+  +  I+     + +   +++   F   +  L     +K +
Sbjct: 837 DNEKDWVQACGCKMPSAKLSKITQIVSGWMQEDSKVKVVIFTQFLRFIDILAGICREKKW 896

Query: 89  PQGRTLDK-----DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              R            ++ E+ E + + +L A   + G GL++      ++   LWW+  
Sbjct: 897 RFARLTGTMSVAAREESLTEFRENENVQVLIASLKAGGVGLDMSMASKCII-VDLWWNEG 955

Query: 143 EHQQ 146
             QQ
Sbjct: 956 IQQQ 959


>gi|242216380|ref|XP_002473998.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726863|gb|EED80799.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1043

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           K    ++++  G      L    A    G+NL     IL+     W  ++ QQ+I R+  
Sbjct: 602 KRAAMLKQFARGGRDGARLLILSAVGLVGVNLAI-ACILIIVDTLWSAQQDQQLIGRLW- 659

Query: 154 TRQRQAGFKRAVFVYYLIAQNTID 177
               +    + V VY LIA+NT D
Sbjct: 660 ----RDPQAKQVLVYRLIARNTSD 679


>gi|149240015|ref|XP_001525883.1| hypothetical protein LELG_02441 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146450006|gb|EDK44262.1| hypothetical protein LELG_02441 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1729

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             DP  + +    KI        +   GL L    +I        +     Q I R+    
Sbjct: 1577 TDPVELFKNPANKITCFLLDANAQASGLTLTNATHI-FLCEPLINTSLELQAISRV---- 1631

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              + G  R   V+     NT++E V+     K 
Sbjct: 1632 -HRIGQTRPTTVWMFTIANTVEESVVLTATRKR 1663


>gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 2992

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 21/184 (11%)

Query: 28   KTVKCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            +  K  Q+     +       +K  K + +  + ALE  +      P    Y    D+ +
Sbjct: 2538 EADKLTQMVFCDISTPQAKPAKKVAKALDNPTLHALEDAVPLPEPEPAFTVYE---DIRQ 2594

Query: 84   --LQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              + K  P        +  T  +      +   G++ +L       G G N+Q     L 
Sbjct: 2595 KLIAKGVPAEQIAFIHEANTEVRKKELFSKVRTGQVRVLLGSTQKMGAGTNVQDRLVALH 2654

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 W   +  Q   RI    +RQ      V VY  + + T D  + Q +  K      
Sbjct: 2655 DLDCPWRPGDLAQRKGRI----ERQGNQNETVHVYRYVTEGTFDAYLWQTVENKQKFISQ 2710

Query: 194  LLNA 197
            ++ +
Sbjct: 2711 IMTS 2714


>gi|298712931|emb|CBJ26833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1672

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 91   GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            GRT  +    +  + N+  I ++     S           + +      W   +  Q + 
Sbjct: 1388 GRTRVERSSAVSSFTNDPSIKVILLTTGSAAA-GLTLTAASTVYMLDPVWSAADEAQALN 1446

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R       + G    V       +++++E +L    +K      L +A
Sbjct: 1447 R-----AHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESA 1489


>gi|312127367|ref|YP_003992241.1| helicase domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777386|gb|ADQ06872.1| helicase domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 889

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RA 164
           +GKI L+    A+   GLNLQ  G  L+   L W+    +Q   RI     R+ G +   
Sbjct: 744 DGKIKLMIGTDAAA-EGLNLQTLGA-LINVDLPWNPIRLEQRQGRI-----RRIGQQFDK 796

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+VY L  +++I++ +   L  +  +   ++ +L
Sbjct: 797 VYVYNLRYKDSIEDRIHAVLSGRIKLTYDMIGSL 830


>gi|157961099|ref|YP_001501133.1| helicase domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157846099|gb|ABV86598.1| helicase domain protein [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------DKDPCTIQEWNEG--KIPL-L 112
           I  ++      +       LA  +    +  T       DK     Q +N    + P+ +
Sbjct: 640 IFTESMDTKTYIERQLQRSLAHTEDGHRRVMTFHGGLGDDKRAEIQQAFNSPPNEHPVRI 699

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ     L  + + W+    +Q   RI  T Q +      V  +Y + 
Sbjct: 700 LIATDAAREGVNLQGHCADLFHYDIPWNPARMEQRNGRIDRTLQSET----EVRCHYFVY 755

Query: 173 QNTIDELVLQRLRTK-STIQDLL 194
            +  +++VL +L  K +TIQ  L
Sbjct: 756 ADRDEDIVLDKLVQKVNTIQREL 778


>gi|17566484|ref|NP_507903.1| hypothetical protein Y113G7B.14 [Caenorhabditis elegans]
 gi|5824699|emb|CAB54333.1| C. elegans protein Y113G7B.14, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 540

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 14/116 (12%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +      AR+ K      T++     + +  +  + ++F    +    +NL +G   ++
Sbjct: 420 IFDIKHPNARITK------TINIIQEVLMKKEKVTVSVVFLSERAGA--INL-HGATHVI 470

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              + W+L   Q+    +          K  V ++ +    T ++ V +    KS 
Sbjct: 471 LLGMHWNLALEQEACSCVC-----NIAQKNIVTIHRIKVAGTNEDDVEKAQDDKSD 521


>gi|260940072|ref|XP_002614336.1| hypothetical protein CLUG_05822 [Clavispora lusitaniae ATCC 42720]
 gi|238852230|gb|EEQ41694.1| hypothetical protein CLUG_05822 [Clavispora lusitaniae ATCC 42720]
          Length = 1704

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 25/140 (17%)

Query: 71   IIVAYHFNSDLARLQKAFPQGRT----------------LDKDPCTIQEWNEGKIPLLFA 114
            I++   +   L  L  AF + +                 L       ++ N  K      
Sbjct: 1491 IVIFSQWRDLLVILASAFDKAKITYVSAKGSHVAASTSKLSDPVEAFKDQNNIKT-CFLL 1549

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            +  +   GL L    +I        +     Q I RI      + G K+   V+    +N
Sbjct: 1550 NAQAQASGLTLINATHI-FLCEPLVNTPTELQAINRI-----HRIGQKKVTTVWMFAIEN 1603

Query: 175  TIDELVLQRLRTKSTIQDLL 194
            T++E ++     K   Q+ L
Sbjct: 1604 TVEENIVALGTRKR--QEYL 1621


>gi|66362534|ref|XP_628233.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
            [Cryptosporidium parvum Iowa II]
 gi|46229715|gb|EAK90533.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
            [Cryptosporidium parvum Iowa II]
          Length = 2042

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHD--EKIKALEVIIE---KANAAPIIVAYHFNSDLAR 83
              K  Q+  G  Y++  +  + + +   KI+A+   I+     N   II+   F   +  
Sbjct: 1827 LNKPNQVDFGIDYFNTIQSIEILGNFGTKIEAIIKHIKWILNNNNDKIIIFSDFQPVIDI 1886

Query: 84   LQKAFPQGRTL-------DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGN 130
            L  A      L         +   I+E++  +        +L  +  + G G+N+    N
Sbjct: 1887 LSSAMHLNEILFKKYCGGKSEYHIIREFSSSENSIDINYRVLLCNHLNVGKGVNIT-AAN 1945

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
             ++F S   +  +  Q I RI      + G  +   ++  I  N+IDEL+ Q L
Sbjct: 1946 HIIFVSPLLNKSDELQAIGRII-----RMGQTKTPHIWNFIIHNSIDELIFQYL 1994


>gi|302495939|ref|XP_003009983.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291173505|gb|EFE29338.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 423

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC 99
             K++A+++ I    +++    I +   F   ++ +         +     G+   K   
Sbjct: 194 SAKLRAVKMFISKWLKESPDIKITIFTQFLGMISAIASACEAEGWRYTTLCGKLHHKTRH 253

Query: 100 T-IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             I+ + E  + +L +   + G GL+L    +  +   LWW+    QQ
Sbjct: 254 ANIKRFREENVSILISSLKAGGVGLDLTM-ASKCILVDLWWNEAIEQQ 300


>gi|282901241|ref|ZP_06309169.1| ATP-dependent helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281193856|gb|EFA68825.1| ATP-dependent helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 961

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 27  SKTVKCLQLANGAV--YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
           SK  + L+L    +    ++      +   +++ L+ +  +      +     +  + +L
Sbjct: 428 SKYQRLLKLIKQDLRWNGEDSGDRLVIFTGRLETLDFLFTELQKDLKL----KSGSILKL 483

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +      + L      ++++++ K P+ +         G+NL Y  + L+ F + W    
Sbjct: 484 KGDMSDTQQL----EVVEQFSKEKDPVRILLATEVASEGINLHYLSHRLIHFDIPWSFMT 539

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---TIDE--LVLQRLRTKST 189
            QQ   RI      + G  +   + YL+ ++    +DE   +++ L  K  
Sbjct: 540 LQQRNGRID-----RYGQSKKPEIRYLLTRSRRTKMDEVDRIIKVLLAKEE 585


>gi|114631893|ref|XP_001150418.1| PREDICTED: helicase, lymphoid-specific isoform 1 [Pan troglodytes]
          Length = 718

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 50  EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
             +  K   L+ ++ +       +++     S L  L                  +  + 
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              +  +N + ++ +      + G G+NL    + ++ +   W
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLT-AADTVIIYDSDW 696


>gi|328773083|gb|EGF83120.1| hypothetical protein BATDEDRAFT_85764 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1198

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 21   EAFNSASKTVKCL---QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             AF++ SK++  L   QLA           +    +  I+ ++ ++       +I+   +
Sbjct: 970  NAFSAGSKSIAQLNIPQLAKRLNAIKVHGSYGSKFNTIIRHIKYLVSTHPQTKVILFSQW 1029

Query: 78   NSDLARLQKAFPQ-----------GRTLDKDP-------CTIQEW-NEGKIPLLFAHPAS 118
               L  L  AF             G T D+          ++  +   G +     +  S
Sbjct: 1030 EQVLNILAAAFQDNGIGFVKMEGSGWTQDRGKFKLKFPGQSVTTFSESGDVVAFMLNAKS 1089

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL L    + ++      +    QQ I R+      + G +    V+  I  NTI++
Sbjct: 1090 HSSGLTLVCAMH-VILIEPLLNRSIEQQAITRV-----HRIGQQNETHVWRYIVHNTIEK 1143

Query: 179  LVLQRLRTKSTIQDLL 194
             +++    + ++ + +
Sbjct: 1144 QIVKLADQRMSVSNQI 1159


>gi|330929262|ref|XP_003302572.1| hypothetical protein PTT_14447 [Pyrenophora teres f. teres 0-1]
 gi|311321978|gb|EFQ89337.1| hypothetical protein PTT_14447 [Pyrenophora teres f. teres 0-1]
          Length = 1529

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
             A  ++   F   LA L+ A  +   G +   D   I+++   + +  L     +   GL
Sbjct: 1270 GAKSVIFSQFGDFLAVLRNALDKWKIGASSIADKDGIRKFKTDQSVECLLLDAKTDSSGL 1329

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             L      +       +     Q I R+      + G +R   V+  +  +T++E +  
Sbjct: 1330 TL-VNATYVFLCEPLINPAIELQAINRV-----HRIGQQRPTTVFMYLISDTVEEAIYD 1382


>gi|222529584|ref|YP_002573466.1| helicase domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456431|gb|ACM60693.1| helicase domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 889

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RA 164
           +GKI L+    A+   GLNLQ  G  L+   L W+    +Q   RI     R+ G +   
Sbjct: 744 DGKIKLMIGTDAAA-EGLNLQTLGA-LINVDLPWNPIRLEQRQGRI-----RRIGQQFDK 796

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+VY L  +++I++ +   L  +  +   ++ +L
Sbjct: 797 VYVYNLRYKDSIEDRIHAVLSGRIKLTYDMIGSL 830


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------------------GRTLDKDPCTI 101
             +E    + +I+  HF   +  + K   +                   G T       +
Sbjct: 360 DQLEANPESRVIIFAHFRDTVNEIVKRLEESEHAKPERFVGQASRDGSAGMTQKAQLEGL 419

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q + EGK  +L A  +    GL++    +++VF+          + I+R G T + +AG 
Sbjct: 420 QRFREGKCNVLVA-TSVGEEGLDVPR-ADLVVFYEPVGS---EIRTIQRRGRTGRHRAG- 473

Query: 162 KRAVFVYYLIAQNTIDE--LVLQRLRTKSTIQDLLLNALKKET 202
                V+ LIA++T DE        R K   Q   ++ +++  
Sbjct: 474 ----TVHILIARDTRDEGARASALFREKKMKQA--IDRVRRNM 510


>gi|188591846|ref|YP_001796445.1| putative DNA/RNA helicase, SNF2 family [Cupriavidus taiwanensis]
 gi|170939241|emb|CAP64284.1| putative DNA/RNA helicase, SNF2 family [Cupriavidus taiwanensis LMG
           19424]
          Length = 948

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT D     +  +       +     +   G+NLQ+  +++V + L W+ +  +Q I R 
Sbjct: 482 RTADIRAALVDYF--RDHATVMIATEAAAEGINLQF-CSMVVNYDLPWNPQRIEQRIGRC 538

Query: 152 GVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G +  V V   +  +N  D  V + L  K  +   +  A
Sbjct: 539 -----HRYGQRYDVVVVNFLNRKNEADRRVFELLSEKFRLFSGVFGA 580


>gi|83646526|ref|YP_434961.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83634569|gb|ABC30536.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis
           KCTC 2396]
          Length = 947

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 17/159 (10%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD---- 95
           KH K  +D K++ L+ II+         ++   + +        L  AFPQ   +     
Sbjct: 456 KHLKSGNDPKLQTLKQIIKPVLDEGYNPVIFCRYIATAEYLADELNSAFPQREVIHVTGD 515

Query: 96  ----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +    I++  E     L         G+NLQ   N ++ + L W+   H+Q   R+
Sbjct: 516 LTPTERLERIEQLKESDKAPLLVATDCLSEGVNLQEQFNAVIHYDLSWNPTRHEQREGRV 575

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               Q+    K    + Y   +N +D  VLQ +  K+  
Sbjct: 576 DRFGQKA---KNVKALMYYGEENPVDGAVLQVILRKAES 611


>gi|158421530|ref|YP_001527757.1| helicase domain-containing protein [Deinococcus geothermalis DSM
           11300]
 gi|158342773|gb|ABW35059.1| helicase C-domain related protein [Deinococcus geothermalis DSM
           11300]
          Length = 678

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 17/145 (11%)

Query: 67  NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN---EGKIPLLF 113
              P    Y F+  L RL            A    +T  +    ++  N    G+  ++ 
Sbjct: 195 GGKPNPHGYSFHQKLQRLIHERTGIPLEKIAIVNAQTCPESEDRLRVSNGLKSGQYQVVI 254

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +  + G G+NLQ+G   L+   + W+    QQ + R+      +       F   L  +
Sbjct: 255 GNTGTMGQGINLQHGVANLLHLDVPWNPAVWQQRVGRVVRQGNTEKHINNKTF---LGTR 311

Query: 174 NTIDELVLQRLRTKSTIQDLLLNAL 198
             +D+ +   LR K    D   N +
Sbjct: 312 G-LDKDMYDTLRGKGVWYDEFWNGV 335


>gi|110633552|ref|YP_673760.1| helicase-like [Mesorhizobium sp. BNC1]
 gi|110284536|gb|ABG62595.1| helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQE 103
            +  +   D++ + +  I+        ++    + +   L +  P         P  ++E
Sbjct: 275 HREKRLTADQRAEKIAEIVSAEPNEAWVIWCDTDYEADALTERIPDAVEVRGSMPDAMKE 334

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                +++  + ++ + P+  G GLN Q+    + F  L +  E+  Q + R       +
Sbjct: 335 ERLVAFSDCSLRIIVSKPSVAGFGLNWQHCA-RVAFVGLSFSYEQFYQAVRRCW-----R 388

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  R V   ++   +T +  +   +  KS        A+K E 
Sbjct: 389 FGQSREVEC-HIAMADT-ERNIWDVVMRKSADH----EAMKAEM 426


>gi|195146790|ref|XP_002014367.1| GL18989 [Drosophila persimilis]
 gi|194106320|gb|EDW28363.1| GL18989 [Drosophila persimilis]
          Length = 168

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 27/100 (27%)

Query: 100 TIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            I+ +N     +  +      + G G+NL  G N ++     W+    QQ I R      
Sbjct: 1   MIKRFNSEVNKRARVFLISARAGGQGINL-IGANRVIILDTSWNPSNDQQNIFR------ 53

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                             T++E V  R  TK  +   +++
Sbjct: 54  -----------------GTMEEKVYSRSVTKQAMSFRVVD 76


>gi|260469738|ref|ZP_05813897.1| DEAD-like helicase [Mesorhizobium opportunistum WSM2075]
 gi|259028470|gb|EEW29787.1| DEAD-like helicase [Mesorhizobium opportunistum WSM2075]
          Length = 464

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCT------IQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
           + N++   + KA P    +            ++ +++GKI +L   P+ CG G+N Q+  
Sbjct: 307 NLNAETEGVTKAIPGAVEVRGSDHDDYKEEKLKAFSQGKIRVLVTKPSICGFGMNWQH-C 365

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +   F  L    E+  Q I R       + G    V     IA +T +  ++  L  K  
Sbjct: 366 HRTGFVGLNDSFEQVYQAIRRFW-----RFGQGSEVTA-DFIAADT-EGAIIANLDRKEQ 418

Query: 190 IQDLLLNAL 198
             + +  A+
Sbjct: 419 DAERMAAAM 427


>gi|321449564|gb|EFX61955.1| hypothetical protein DAPPUDRAFT_120717 [Daphnia pulex]
          Length = 289

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVF 134
             D+  L+       T++K       +N+    +  +      + G G+NL    N ++ 
Sbjct: 174 KLDVDYLR--MDGHTTVEKRNSDCNMFNDPMNIRARVFLISTKAGGMGINLT-AANRVII 230

Query: 135 FSLWWDLEEHQQMIERIGV 153
           F   W+     Q I R+  
Sbjct: 231 FDASWNPSHDIQSIFRVYS 249


>gi|83956079|ref|ZP_00964561.1| hypothetical protein NAS141_02761 [Sulfitobacter sp. NAS-14.1]
 gi|83839645|gb|EAP78824.1| hypothetical protein NAS141_02761 [Sulfitobacter sp. NAS-14.1]
          Length = 972

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 23/145 (15%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------------DKDPCTIQEWNEG 107
           +  N   +IV   +   L  L+K   +  +L                ++       +N  
Sbjct: 423 DSWNQRRVIVFSEYRDTLDWLRKQLLEELSLSPEDDRIAEFHGSTQPNERERIKARFNAD 482

Query: 108 --KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + PL +     +   G+NLQ+    L  F L W+    +Q   RI     R+      
Sbjct: 483 PDQEPLRILLCTDAAREGINLQHRCYDLFHFDLPWNPSRLEQRNGRID----RRLQPAPE 538

Query: 165 VFVYYLIAQNTIDELVLQRLRTKST 189
           +F  Y   +N   + +LQ L  K+ 
Sbjct: 539 IFCRYFTYKNRSSDRILQALFKKTE 563


>gi|330508278|ref|YP_004384706.1| helicase domain-containing protein [Methanosaeta concilii GP-6]
 gi|328929086|gb|AEB68888.1| helicase domain protein [Methanosaeta concilii GP-6]
          Length = 1149

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 42/164 (25%)

Query: 53  DEKIKALEVIIEKAN-----AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--- 104
           + K++ L+ ++++          +++       L  L      GR L K    ++EW   
Sbjct: 474 ESKLQRLKEVLKEQGVFADPKMKLLLFTEHKDTLEYLAGDGKDGRPLGK----LREWGLS 529

Query: 105 --------------------NEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                               N  +I      + A   + G G+NLQ+    ++ + + W+
Sbjct: 530 VTQIHGGMKIGDRDTAGTRINAERIFKEDCQVMAATEAAGEGINLQF-CWFMINYDIPWN 588

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
               +Q + RI      + G ++   +   ++  T +  VLQ+L
Sbjct: 589 PMRLEQRMGRI-----HRYGQEKDCLILNFVSIKTREGRVLQKL 627


>gi|257451832|ref|ZP_05617131.1| helicase [Fusobacterium sp. 3_1_5R]
 gi|317058387|ref|ZP_07922872.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684063|gb|EFS20898.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 2244

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1883 SGEIRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 1938

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  I + T D  + Q +  K      ++ +
Sbjct: 1939 EVYRYITEGTFDAYLWQTIENKQKFISQIMTS 1970


>gi|58616182|ref|YP_195311.1| DNA helicase [Azoarcus sp. EbN1]
 gi|56315643|emb|CAI10287.1| DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 671

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 19/151 (12%)

Query: 64  EKANAAPIIVAYHFNSDL---ARLQKAFPQGRTLDKDPCTIQE----------WNEGKIP 110
           E A    ++V  ++  D    A       +GR +      + +            +  + 
Sbjct: 506 EVAKDEKMVVFVNYTEDAYAHAEYLTGLGKGRFVVLTGDILSDAKRQELLDCVQRDDSVK 565

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +         G++L    ++ +  S  W     +Q  +R       + G  R V V   
Sbjct: 566 GIVGSYGVLAEGVDLWRANHVYI-ASQPWTPATLEQAEDRCN-----RLGQTRLVRVEIP 619

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I   TIDE + + +  K+ I + +L+  + E
Sbjct: 620 IFAGTIDEAIRELISGKAEIVEDVLDPEEAE 650


>gi|161528452|ref|YP_001582278.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339753|gb|ABX12840.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 502

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 26/177 (14%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------- 85
           AV+  +E   + +   KI  L+ IIE       ++   +   +  +              
Sbjct: 318 AVHLAKEAQSRGIEHSKIPKLKDIIESVPGK-ALIFTSYRDSVDLIHSKLTELGVSAGIL 376

Query: 86  --KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             KA   G    K    +Q++ +G   +L A       GL++    N ++F+        
Sbjct: 377 IGKAGETGLKQKKQIEIVQKFRDGIFDVLIA-TRVGEEGLDIAE-VNQVIFYDNVPSSVR 434

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q        R+ + G K    +  LIA+NTIDE      + K +    + + + K
Sbjct: 435 FIQ--------RRGRTGRKDTGKLVVLIAKNTIDETYYWIGKRKMSASKAMGDKMTK 483


>gi|291295620|ref|YP_003507018.1| helicase domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290470579|gb|ADD27998.1| helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 940

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 30/196 (15%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            G  + A   A++  +  +LA  A      +      D K++    +++   A     IV
Sbjct: 438 PGGEVSA--EAAEQRRLRELAREA------EALAGAKDRKLQRAIELVKDLLAEGHHPIV 489

Query: 74  AYHFNSDLA----RLQKAFPQGRTLD---------KDPCTIQEWNEGKIPL-LFAHPASC 119
              F          L++A   G  ++         +    ++    G+ P+ +       
Sbjct: 490 FCRFIQTAEYVAGHLRQALGAGVAVEAVTGLLSPPEREQAVER--LGQQPVRVLVATDCL 547

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NLQ   + ++ + L W+   H+Q   R+    Q +    + +  +   A N +D +
Sbjct: 548 SEGINLQQYFSAVLHYDLSWNPTRHEQREGRVDRYGQPRR-QVKTLTYFG--ANNPVDGI 604

Query: 180 VLQRLRTK-STIQDLL 194
           VL+ L  K   I+  L
Sbjct: 605 VLEVLLRKHKAIRSAL 620


>gi|331004417|ref|ZP_08327889.1| hypothetical protein HMPREF0491_02751 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411055|gb|EGG90475.1| hypothetical protein HMPREF0491_02751 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 903

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+I +L       G G N Q     +    + W   +  Q   RI     RQ    + V
Sbjct: 343 KGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLSQRAGRIV----RQGNENKDV 398

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++  + +NT D  + Q L  K      ++ +
Sbjct: 399 YIFRYVTENTFDAYLFQTLENKQKYISQIMTS 430


>gi|226334820|ref|YP_002784492.1| hypothetical protein ROP_pKNR-00480 [Rhodococcus opacus B4]
 gi|226246040|dbj|BAH56140.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 2889

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L     + G G+N+Q     L      W   + +Q   RI     RQ    + V
Sbjct: 2322 RGEVKVLIGSSETMGTGMNVQKRATALYHVDCPWRPADLEQREGRII----RQGNQNKTV 2377

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  ++ + + D    Q +  KS   + L
Sbjct: 2378 EIINIVGERSYDTTKWQTVEKKSAYIEQL 2406


>gi|331212997|ref|XP_003307768.1| ATP-dependent DNA helicase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298171|gb|EFP74762.1| ATP-dependent DNA helicase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1167

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            + + I   +    + K  Q +N    +     W       +K +E + ++     IIV  
Sbjct: 1033 KEKEICYRSGCVPSTKLGQFSNPRCLHTP---WL------LKQIEDVKKENPTDKIIVVS 1083

Query: 76   HFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNE-------GKIPLLFAHPASCGHGLN 124
             + S LA     L++   +  +   D  T++            +  ++       G GLN
Sbjct: 1084 QWTSMLAICGTFLRERGLRFVSYQGDMNTVERNQAVKNFKTKPEYSIMLMSLKCGGVGLN 1143

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIE 149
            L    N +V   L W     +Q  E
Sbjct: 1144 LTC-ANRVVSLDLAWSPASEKQAFE 1167


>gi|289183836|ref|YP_003457377.1| NPH-1 [Pseudocowpox virus]
 gi|288804308|gb|ADC53973.1| NPH-1 [Pseudocowpox virus]
          Length = 638

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 92  RTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           RT D     +  +N        +I +      S   GL+     +I +   + W+    +
Sbjct: 416 RTRDTRAKLVDAFNACDNTDGERIKVCVFSL-SGSEGLSFLSINDIFIL-DMTWNEASLR 473

Query: 146 QMIERIGVTRQRQAG--FKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   L
Sbjct: 474 QIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLDLIRDKSRQFTQLFRVL 533

Query: 199 KK 200
           K+
Sbjct: 534 KR 535


>gi|288804176|gb|ADC53842.1| NPH-1 [Pseudocowpox virus]
          Length = 638

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 92  RTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           RT D     +  +N        +I +      S   GL+     +I +   + W+    +
Sbjct: 416 RTRDTRAKLVDAFNACDNTDGERIKVCVFSL-SGSEGLSFLSINDIFIL-DMTWNEASLR 473

Query: 146 QMIERIGVTRQRQAG--FKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   L
Sbjct: 474 QIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLDLIRDKSRQFTQLFRVL 533

Query: 199 KK 200
           K+
Sbjct: 534 KR 535


>gi|315040573|ref|XP_003169664.1| hypothetical protein MGYG_08572 [Arthroderma gypseum CBS 118893]
 gi|311346354|gb|EFR05557.1| hypothetical protein MGYG_08572 [Arthroderma gypseum CBS 118893]
          Length = 1256

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 95  DKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+     + +N+      +L    A  G GLNL    N ++      ++    Q I R+ 
Sbjct: 857 DEREQAARNFNDPAHDCQVLLTTYACGGVGLNLHGDCNTVILVEPALNVNTIIQAIGRL- 915

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                + G ++   V+ L  Q++ D  +      K   Q
Sbjct: 916 ----HRLGQQQEQEVFILFLQHSWDRFIEHNSAKKMVGQ 950


>gi|166366739|ref|YP_001659012.1| helicase protein [Microcystis aeruginosa NIES-843]
 gi|166089112|dbj|BAG03820.1| probable helicase protein [Microcystis aeruginosa NIES-843]
          Length = 500

 Score = 49.2 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K        K++ L  +I + +  PI++  + N+ + R+ ++F       + P     
Sbjct: 311 ESKEISSGTQGKLRVLAELICEHHPEPILIFTNDNATVYRISESFLIPAITHQTPVKERH 370

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  + +G+  +L         G+++     I +  S      E+ Q + R+    Q  
Sbjct: 371 EILTRFRQGEYKILVTS-HVLNEGVDVPE-ARIAIILSGTGSTREYIQRLGRVLRKGQ-- 426

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               +   +Y +IA+NT +E   QR R +  
Sbjct: 427 -QEDKRAILYEVIAENTTEEKTSQRRRGEQK 456


>gi|260101489|ref|ZP_05751726.1| Snf2 family protein [Lactobacillus helveticus DSM 20075]
 gi|260084703|gb|EEW68823.1| Snf2 family protein [Lactobacillus helveticus DSM 20075]
          Length = 411

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    ++L  +L  +    F  A     ++  K  ++        E  H    +  K+ 
Sbjct: 278 LYKLQTQKLIAELSCQGDAEFKRAHFEIFAQITKLREICCDPHLLYENYH---GNSGKLI 334

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWN 105
           A   +I+    N   I++   F S L  +Q    +         G T  K+    I ++N
Sbjct: 335 ATIDLIKANLENGHKILLFSQFTSMLEIIQNKLRKLKVPIFVITGATAKKERQDKIHQFN 394

Query: 106 EGKIP-LLFAHPASCGH 121
               P +      + G 
Sbjct: 395 SLDKPAIFLISLKAGGT 411


>gi|83776188|dbj|BAE66307.1| unnamed protein product [Aspergillus oryzae]
          Length = 619

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII---VAYHFNSDL 81
           +++K VK  ++  G +  + +     +  + +  L ++    N    +   V+ +   +L
Sbjct: 473 TSAKLVKIQEIVKGWIDENPDVKIV-IFTQFLDFLRLVGLMCNKEKWVATSVSSNLRHNL 531

Query: 82  ARLQKAFPQGRT-------LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             +       RT       L     ++ ++ +E ++ +L A   + G GL++    N  +
Sbjct: 532 PLIHGGSAANRTQLHGKLSLQAREQSMDKFRDEKEVRILIASLKAGGIGLDMSM-ANKCI 590

Query: 134 FFSLWWDLEEHQQMIERIGVTRQR 157
              LWW+    QQ++         
Sbjct: 591 LVDLWWNEAIQQQVLHTHTFDFIH 614


>gi|319936976|ref|ZP_08011386.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319807912|gb|EFW04491.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 2439

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTL-----DKDPC 99
            + WKE  D+K   L V  + +          +N    + +++  P+         D D  
Sbjct: 2022 RIWKENADKKSAQL-VFCDLSTPKNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMK 2080

Query: 100  TIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + + +   G++ +L       G G N+Q     L      W   + +Q   RI     
Sbjct: 2081 KKELFQKTRKGEVRVLLGSTQKMGAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIV---- 2136

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 2137 RQGNENPQVDIYRYVTEQTFDAYLYQLVEGKQKFASQIMTS 2177


>gi|84516121|ref|ZP_01003481.1| ATP-dependent helicase HepA [Loktanella vestfoldensis SKA53]
 gi|84509817|gb|EAQ06274.1| ATP-dependent helicase HepA [Loktanella vestfoldensis SKA53]
          Length = 823

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 26/162 (16%)

Query: 45  EKHWKEVHDEK--IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
               ++    K  I AL+ ++  A     ++   + +   ++  A  +  T         
Sbjct: 333 SGEVEKDPKFKALISALKDLL--AKGHAPVIFCRYIATAEQIGAALQKFATKHTVEVITG 390

Query: 103 EWNEGKIPLLFAHPASCGH-------------GLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +  +        GH             G+NLQ   + ++ + L W+   HQQ   
Sbjct: 391 SIPSEEREIRVEEL--GGHENRILVATDCLSEGINLQGWFDAVIHYDLSWNPTRHQQREG 448

Query: 150 RIGVTRQRQAGFKRAVFVYYLI--AQNTIDELVLQRLRTKST 189
           RI      + G K  V    L+    N +D  VL+ +  K+ 
Sbjct: 449 RID-----RFGQKAPVVRSILMYGENNPVDGAVLEVIIRKAE 485


>gi|197286326|ref|YP_002152198.1| plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
 gi|194683813|emb|CAR44896.1| putative plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
          Length = 987

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 99  CTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++E+     K+ LL     +   G+NL +  + +V F + W L   QQ   RI     
Sbjct: 519 SVVEEFGKENSKLRLLVCSDVAS-EGINLHHLSHKMVHFDVPWSLMVFQQRNGRID---- 573

Query: 157 RQAGFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQD 192
            + G K    + YL+ Q+     + D  VL+ L  K     
Sbjct: 574 -RYGQKHQPEIRYLLTQSDNPRISGDTRVLEVLINKDDQAQ 613


>gi|328949357|ref|YP_004366694.1| helicase [Treponema succinifaciens DSM 2489]
 gi|328449681|gb|AEB15397.1| helicase domain protein [Treponema succinifaciens DSM 2489]
          Length = 595

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 39  AVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRT 93
           AV  + EKH     +  K K ++ ++EK     I++   F + L  + K        G+T
Sbjct: 415 AVAANREKHRIASENPLKNKIVQELVEKFKDDKILIIGQFLTHLEIIAKLLNVPIITGKT 474

Query: 94  LDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +   I  ++  GKI +L          ++L      +     +   +E  Q + RI 
Sbjct: 475 KNSERDIIYDDFRSGKIRVLVVS-KVANFAIDLPDASVAIQVSGTFGSRQEEAQRLGRIL 533

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             +      +R    + LI + T++E 
Sbjct: 534 RPK------ERTSRFFTLITRGTVEED 554


>gi|269839666|ref|YP_003324358.1| helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269791396|gb|ACZ43536.1| helicase domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 950

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTI 101
            D K+  L   + +   +    IV  +F      L++         F   +         
Sbjct: 470 ADAKLACLADTLRELLRDGFQPIVFCYFIHTANYLKEHLEPLLRGEFEDLQVEAVTGELS 529

Query: 102 QEWNEGKIPLLFAHPASC-------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++  + +I  L   P            G+NLQ   + +V + L W+    +Q   R+   
Sbjct: 530 EDQRKERIAQLAQAPRRVLVATDCLSEGINLQDHFDAVVHYDLPWNPNRLEQREGRVDRF 589

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            Q++    RAV +      N +D  V++ L  K+
Sbjct: 590 GQQRD-EVRAVTISG--ENNPVDLTVMRVLVRKA 620


>gi|58038295|ref|YP_190264.1| DNA methylase [Gluconobacter oxydans 621H]
 gi|58000709|gb|AAW59608.1| DNA methylase [Gluconobacter oxydans 621H]
          Length = 1713

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 64   EKANAAPIIVAY-HFNSDLARL---QKAFPQGRTLDKDPC---TIQEWNEGKIPLLFAHP 116
            E A       AY     +L R+   ++     +   K        ++ N G+  +L    
Sbjct: 1301 EAALEKRGFSAYLWIRDELMRMGVPREQIAFMQHYKKSAAKQGLFRDLNSGRKRILIGSS 1360

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A+ G G+N Q     L    + W + +  Q   RI    +RQ      + +Y    + ++
Sbjct: 1361 ATMGTGVNAQQRLIALHHLDVPWLVADIIQREGRI----ERQGNQNPVIQIYAYALKGSV 1416

Query: 177  DELVLQRLRTKS 188
            D    Q L  K 
Sbjct: 1417 DATNWQLLERKQ 1428


>gi|291614396|ref|YP_003524553.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584508|gb|ADE12166.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 843

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWNE 106
             ++     ++ +A     +V +    +   +Q   P+       + LD     I ++++
Sbjct: 302 SARVAKAAELVNEAPDDHFVVWHDLEDERREIQTVLPEAMSVWGSQDLDAREQRIIDFSD 361

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L   P   G G N Q   +  +F  + +   +  Q I R+      +   +  V 
Sbjct: 362 GKYRILSTKPIIAGSGCNFQRHCHREIFSGIGFKFNDFIQAIHRVQ-----RFQQEFEVR 416

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +  +  +   +  +L+ L  K      ++N +
Sbjct: 417 IDIIHTE--AEREILRTLLAKWEQHKDMVNKV 446


>gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus equi
            subsp. equi 4047]
 gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi]
 gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi 4047]
          Length = 3975

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGNILVFFSLWWDLEEHQQM 147
             +   +      +  +G+I +L       G G N Q      + L    + W   + +Q 
Sbjct: 3398 AKNNKEKDKIFDKVRKGEIRVLLGSTQKMGAGTNAQNKLIATHDL---DVPWRPADLEQR 3454

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI     RQ      V ++  I +NT D  + Q L TK T    ++N+
Sbjct: 3455 KGRIV----RQGNENDDVHIFRYITENTFDAYLFQTLETKQTYISQIMNS 3500


>gi|209884695|ref|YP_002288552.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
 gi|209872891|gb|ACI92687.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
          Length = 856

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 13  CDLQGENIEAFNSASKTVKCLQ---LANGAVYYDEEKHWKEVHD-EKIKALEVIIEKANA 68
            D++   I A ++ + T +  Q    A+ A+        K     ++I  +  +I     
Sbjct: 271 LDIRWHEIPADHTKAGTERDGQAKFFADEAIGVQNASKVKRDSLPQRIDLMAGLIASDPD 330

Query: 69  APIIVAYHFNSDLARLQKAFPQGR-TLDKDPCTIQE-----WNEGKIPLLFAHPASCGHG 122
              ++ +   ++   ++K  P  R         + E     +  G+ P L   P+  G G
Sbjct: 331 DHCLLWHDLEAERLSIEKTIPSVRSIFGSQDLDVNEANAIGFKRGEFPYLATKPSMSGAG 390

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            N QY  + ++F  + +   +  Q + R+      + G  + V +  +  +   +  V +
Sbjct: 391 CNFQYFCHWMIFLGIGFKFHDFIQAVHRL-----MRFGQTKKVRLDLIYTE--QERSVRR 443

Query: 183 RLR---TKSTIQDLLLNALKKE 201
           +L     +   Q  ++  + KE
Sbjct: 444 KLEERWKRHDEQSAIMADIIKE 465


>gi|40556012|ref|NP_955097.1| CNPV074 NPH-I, transcription termination factor [Canarypox virus]
 gi|40233837|gb|AAR83420.1| CNPV074 NPH-I, transcription termination factor [Canarypox virus]
          Length = 635

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASC 119
           + +   I++ Y     +  ++ +    RT D     + E+N     +G+I  +     S 
Sbjct: 389 RLSGIEILLQYFNVFGITYIEFS---SRTKDVRSKNVAEFNVIDNTDGEITKVCVFSQSG 445

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ---- 173
             G++     +I +   + W+    +Q+I R          +  +R V VY+++A+    
Sbjct: 446 NEGISFLSINDIFIL-DMTWNEASLKQIIGRAIRLNSHMNNSPERRYVNVYFVVAKLASG 504

Query: 174 NT-IDELVLQRLRTKSTIQDLLLNALKKETI 203
            T +DE++L  +R KS     L   LK  +I
Sbjct: 505 GTSVDEVLLDIIRAKSKEFSQLYRVLKYSSI 535


>gi|303233580|ref|ZP_07320238.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495324|gb|EFL55072.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 3641

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +   +      +  +G+I +L       G G N Q     +    + W   +  Q   
Sbjct: 3090 KAKNNREKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLAQRAG 3149

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3150 RIV----RQGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3193


>gi|315652657|ref|ZP_07905634.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485101|gb|EFU75506.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 833

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+I +L       G G N Q     +    + W   +  Q   RI     RQ      V
Sbjct: 273 KGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLSQRAGRIV----RQGNENEDV 328

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++  + +NT D  + Q L  K      ++ +
Sbjct: 329 YIFRYVTENTFDAYLFQTLENKQKYISQIMTS 360


>gi|29566664|ref|NP_818230.1| gp179 [Mycobacterium phage Bxz1]
 gi|29425389|gb|AAN16813.1| gp179 [Mycobacterium phage Bxz1]
          Length = 620

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 19/159 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
           +     KI+ L   +E    +    IV  H+ S      +   +         G+T  + 
Sbjct: 440 QAKFSAKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHHLKVPYVLHYGTGQTARES 499

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 +  +  +        +  HGLN+Q     ++     +  ++  Q   RI     
Sbjct: 500 QAAQDRFKADPDLTCFLTS-DAGSHGLNMQE-ARYVINTDPLYSYDDLTQRNARIDRADS 557

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLL 194
              G       Y +I + + ++  + Q    +  + + +
Sbjct: 558 HLDGL----TAYVMITEESKVENRIWQVCEQRRQLAEAV 592


>gi|302760235|ref|XP_002963540.1| hypothetical protein SELMODRAFT_80139 [Selaginella moellendorffii]
 gi|300168808|gb|EFJ35411.1| hypothetical protein SELMODRAFT_80139 [Selaginella moellendorffii]
          Length = 959

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +  R+          D+   T     + ++ +      + G GL+L    N++       
Sbjct: 411 EFIRIDGHTD---AKDRQKATEIFRQKDEVKVAIVGVTAGGVGLDLSAARNVVFVELPKT 467

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-------LVLQRLRTKSTIQD 192
             E  QQ  +R       + G K AV +Y   A+ T DE         L+R+ T +   +
Sbjct: 468 ASELVQQAEDR-----AHRRGQKSAVNIYIFCAKETSDECHWQSLSKSLERVTTMTNGSE 522

Query: 193 LLLNALKKETI 203
             +  L+ ET+
Sbjct: 523 DAIPGLEVETL 533


>gi|221635687|ref|YP_002523563.1| helicase, Snf2 family [Thermomicrobium roseum DSM 5159]
 gi|221157442|gb|ACM06560.1| helicase, Snf2 family [Thermomicrobium roseum DSM 5159]
          Length = 900

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 90  QGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           QG T  +    +  +    G++ +L    A+   GLNLQ  G  L+   L W+    +Q 
Sbjct: 731 QGGTATRVGRDVLKERVQRGELRILVGTDAAS-EGLNLQRLG-TLINVDLPWNPTRLEQR 788

Query: 148 IERIGVTRQRQAGFKRAVFVYY-LIAQNTIDELVLQRLRTK 187
             RI      + G  RAV     L  + ++++ V Q L  +
Sbjct: 789 KGRIQ-----RIGQPRAVVFLCNLRYRGSVEDRVHQLLSAR 824


>gi|109393365|ref|YP_656163.1| gp183 [Mycobacterium phage Catera]
 gi|203457501|ref|YP_002224847.1| gp182 [Mycobacterium phage Rizal]
 gi|203460671|ref|YP_002224405.1| gp184 [Mycobacterium phage Spud]
 gi|281416090|ref|YP_003347826.1| gp176 [Mycobacterium phage ET08]
 gi|91981187|gb|ABE67902.1| gp183 [Mycobacterium phage Catera]
 gi|197312029|gb|ACH62386.1| gp182 [Mycobacterium phage Rizal]
 gi|197312252|gb|ACH62608.1| gp184 [Mycobacterium phage Spud]
 gi|255927769|gb|ACU41390.1| gp176 [Mycobacterium phage ET08]
 gi|255928057|gb|ACU41676.1| gp181 [Mycobacterium phage LRRHood]
          Length = 620

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 19/159 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
           +     KI+ L   +E    +    IV  H+ S      +   +         G+T  + 
Sbjct: 440 QAKFSAKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHHLKVPYVLHYGTGQTARES 499

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 +  +  +        +  HGLN+Q     ++     +  ++  Q   RI     
Sbjct: 500 QAAQDRFKADPDLTCFLTS-DAGSHGLNMQE-ARYVINTDPLYSYDDLTQRNARIDRADS 557

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLL 194
              G       Y +I + + ++  + Q    +  + + +
Sbjct: 558 HLDGL----TAYVMITEESKVENRIWQVCEQRRQLAEAV 592


>gi|17975021|ref|NP_536535.1| E11L [Monkeypox virus Zaire-96-I-16]
 gi|17529888|gb|AAL40566.1|AF380138_108 E11L [Monkeypox virus Zaire-96-I-16]
 gi|68448985|gb|AAY97107.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|68449187|gb|AAY97308.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|300872731|gb|ADK39133.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|323098517|gb|ADX22755.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
 gi|323098714|gb|ADX22951.1| bifunctional ATPase/nucleoside triphosphate phosphohydrolase-I
           [Monkeypox virus]
          Length = 631

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPC 99
           KE   + I     I+       +   +   S +  L   F            RT D    
Sbjct: 362 KEKSVKFIDVCLGILASHGKCLVFEPFVNQSGIEILLLYFKVFGISNIEFSSRTKDTRIK 421

Query: 100 TIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+N      G+        +S G G++     +I +   + W+    +Q++ R    
Sbjct: 422 AVAEFNQESNTNGEYIKTCVFSSSGGEGISFFSINDIFIL-DMTWNEASLRQIVGRAIRL 480

Query: 155 RQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                    +R V V++++A+      T+DE + + ++ KS     L    K  ++
Sbjct: 481 NSHVLTPPERRYVNVHFIMARLSNGMPTVDEDLFEIIQNKSKEFVQLFRVFKHTSL 536


>gi|146283765|ref|YP_001173918.1| SNF2 family DNA/RNA helicase [Pseudomonas stutzeri A1501]
 gi|145571970|gb|ABP81076.1| superfamily II DNA/RNA helicase, SNF2 family [Pseudomonas stutzeri
           A1501]
          Length = 957

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 98  PCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             T++++ +   PL L         GLNL Y  + L+ F + W L   QQ   R+     
Sbjct: 486 QQTVEDFGKTHSPLRLLIASDVASEGLNLHYQAHRLIHFDISWSLMVFQQRNGRVD---- 541

Query: 157 RQAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKST 189
            + G  RA  + YL+ +   +        L+ L  K  
Sbjct: 542 -RYGQTRAPKIAYLLTEPRHERIRGDLRYLEILIDKDE 578


>gi|92109603|ref|YP_571890.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91802685|gb|ABE65058.1| helicase-like [Nitrobacter hamburgensis X14]
          Length = 1703

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 63   IEKANAAPIIVAY-HFNSDLARL------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            +E +       AY    ++L RL             +  +       ++N GK+ +L   
Sbjct: 1312 VEASRG---FSAYRWIRNELVRLGVPAPEIAYMQDHKKSEAKQRLFNDFNAGKVRILLGS 1368

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+N+Q     L    + W   + +Q   RI     RQ      V V+      +
Sbjct: 1369 SDTMGTGVNVQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDVFAYATLGS 1424

Query: 176  IDELVLQRLRTKS 188
            +D  + Q    K+
Sbjct: 1425 LDATMWQNNERKA 1437


>gi|77164070|ref|YP_342595.1| helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254435267|ref|ZP_05048774.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882384|gb|ABA57065.1| Helicase-like protein [Nitrosococcus oceani ATCC 19707]
 gi|207088378|gb|EDZ65650.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 910

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E ++ L+ A  A+C  GLNLQ  G  L+   L W+    +Q + RI    Q +      V
Sbjct: 757 EREVRLMVATDAAC-EGLNLQMLG-TLINVDLPWNPTRLEQRLGRIKRLGQLR----ENV 810

Query: 166 FVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNALKKE 201
            +  L+ Q T+DE + +RL  +      +   L + LK E
Sbjct: 811 DMLNLVYQGTVDETIYERLSERMRDRYDLFGALPDTLKDE 850


>gi|257454540|ref|ZP_05619798.1| helicase/SNF2 family protein [Enhydrobacter aerosaccus SK60]
 gi|257448102|gb|EEV23087.1| helicase/SNF2 family protein [Enhydrobacter aerosaccus SK60]
          Length = 82

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +P+      + G  LNL    + ++ ++ WW+   
Sbjct: 1   MPVFLISLKAGGVRLNLTT-ADTVIHYNPWWNPAA 34


>gi|154149046|ref|YP_001405769.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
 gi|153805055|gb|ABS52062.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
          Length = 2117

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +      G +  K     Q+ N G+I +L    A  G G N+Q     +  F + W 
Sbjct: 1683 REEIAFIHDTGGSNAKKQELFQKVNSGEIRVLIGSTAKMGAGTNVQERVTAIHHFDVPWR 1742

Query: 141  LEEHQQMIERIGVTRQRQA-GFKRA----VFVYYLIAQNTIDELVLQRLRTKSTI 190
              +  Q   R  V RQ      K      +  +  + +NT D +  Q + TKS  
Sbjct: 1743 PSDFIQRNGR--VIRQGNVLFQKDPDNFKIKEFRYVTENTYDAVSWQIIETKSNS 1795


>gi|227500577|ref|ZP_03930626.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217318|gb|EEI82655.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 449

 Score = 48.8 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           + +   +      +  +G+I +L       G G N Q     +    + W   +  Q   
Sbjct: 150 KAKNNMEKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQRAG 209

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 210 RIV----RQGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 253


>gi|331004670|ref|ZP_08328131.1| hypothetical protein HMPREF0491_02993 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409495|gb|EGG88937.1| hypothetical protein HMPREF0491_02993 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 909

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+I +L       G G N Q     +    + W   +  Q   RI     RQ      V
Sbjct: 349 KGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLSQRAGRIV----RQGNENEDV 404

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++  + +NT D  + Q L  K      ++ +
Sbjct: 405 YIFRYVTENTFDAYLFQTLENKQKYISQIMTS 436


>gi|155676733|dbj|BAF75717.1| hypothetical protein [Streptococcus thermophilus]
          Length = 349

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A     G GLN+Q     +    + W   +  Q   R+     RQ    + V +Y+ 
Sbjct: 1   ILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNGRLI----RQGNMHQEVDIYHY 56

Query: 171 IAQNTIDELVLQRLRTK 187
           I + + D  + Q    K
Sbjct: 57  ITKGSFDNYLWQTQENK 73


>gi|330464865|ref|YP_004377766.1| putative helicase [Verrucosispora maris AB-18-032]
 gi|328813847|gb|AEB48018.1| putative helicase [Verrucosispora maris AB-18-032]
          Length = 1923

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G + +L       G G N+Q     L      W   +  Q   RI     RQ      V
Sbjct: 1292 NGDVSVLIGSTGRMGTGTNIQNRAVALHHLDCPWRPADITQRDGRIL----RQGNQNDEV 1347

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +Y  +   + D    Q +  K    D ++   +   I
Sbjct: 1348 SIYRYVVTGSFDAFSWQTVARKGGFIDQMMRGTEAREI 1385


>gi|240279173|gb|EER42678.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1151

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 10/104 (9%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             A  IV   +   L  L +AF   +     +D      Q   +  +     H  +   GL
Sbjct: 913  GAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVEQFKTDPSVECFLLHAKAYSSGL 972

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            NL    + +       +     Q I R+      + G K+   V
Sbjct: 973  NLINATH-VFLCEPLINTAIELQAIARV-----HRIGQKQETTV 1010


>gi|320581003|gb|EFW95225.1| Putative helicase [Pichia angusta DL-1]
          Length = 1498

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 63/204 (30%), Gaps = 24/204 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKIKAL 59
            + Y      +  ++    ++    +   +   Q+    +Y    E      V+ +    L
Sbjct: 1251 RLYQSLDPTMLKEISSIELKKNYGSKVDMIVRQI----IYLKQMEPDVQILVYSQWTDFL 1306

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            + +      N    + +          +    +GR+        +   + +I     +  
Sbjct: 1307 KFLGRALRQNGISFLSSSDVTHG----EPNTKKGRSTFGSKEIDKFKRDPRITCFLLNAK 1362

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GL L    + +       +L    Q I RI      + G  +   V+  + +N+++
Sbjct: 1363 AQAAGLTLTNASH-VFLCEPLVNLPLELQAISRI-----HRIGQSQETKVWNFVIENSVE 1416

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
            E +      K       +  +++ 
Sbjct: 1417 ESIAILSTKKR------MELVRRR 1434


>gi|256845761|ref|ZP_05551219.1| helicase [Fusobacterium sp. 3_1_36A2]
 gi|256719320|gb|EEU32875.1| helicase [Fusobacterium sp. 3_1_36A2]
          Length = 2122

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +IEK      I   H  +D  +  + F + R              G+I +L       G 
Sbjct: 1750 LIEKGIPEKEIAFIHDANDEKQKDEMFTKVR-------------SGEIRVLIGSTQKMGA 1796

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G N+Q     L    + W   + +Q   RI     RQ    + V VY  + +NT D  + 
Sbjct: 1797 GTNVQTKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKNVEVYRYVTENTFDAYLW 1852

Query: 182  QRLRTKSTIQDLLLNA 197
            Q +  K      ++ +
Sbjct: 1853 QTIENKQKFISQIMTS 1868


>gi|189193863|ref|XP_001933270.1| ATP-dependent DNA helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978834|gb|EDU45460.1| ATP-dependent DNA helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1528

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGL 123
             A  I+   F   L  L+ A  +   G +   D   I+++   + +  L     +   GL
Sbjct: 1271 GAKSIIFSQFGDFLGVLRDALDKWKIGASSIADRNGIRKFKTDQSVECLLLDAKTDSSGL 1330

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             L      +       +     Q I R+      + G +R   V+  +  +T++E +  
Sbjct: 1331 TL-VNATYVFLCEPLINPAIELQAINRV-----HRIGQQRPTTVFMYLISDTVEEAIYD 1383


>gi|317496497|ref|ZP_07954846.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
 gi|316913300|gb|EFV34797.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
          Length = 1714

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +      +  +G + +L       G G N+Q     L    + W   + +Q   RI   
Sbjct: 1170 KRKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV-- 1227

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RQ    + V +Y  I +NT D  + Q +  K      ++ +
Sbjct: 1228 --RQGNENKEVNIYRYITENTFDAYLWQTIENKQKFISQIMTS 1268


>gi|302144118|emb|CBI23223.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              KI+AL      ++E   +A  +V   F S L  ++ +  +            T+D  
Sbjct: 164 TSTKIEALREEIRFMVETDGSAKALVFSEFISFLDLIEYSLLKSEINCVKLVMDNTVDAR 223

Query: 98  PCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              + + + +    +L     + G  LNL     +   F L+W
Sbjct: 224 NALVSRFFKDPDCKILLTTLEAGGVSLNLTIASYVSNSFLLFW 266


>gi|330892659|gb|EGH25320.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 64

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 1   KPVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 35


>gi|293379341|ref|ZP_06625486.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
 gi|292642033|gb|EFF60198.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
          Length = 483

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 29/172 (16%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K KA   +I+K  +     IV   F S +  L+    +             +D+    
Sbjct: 303 SSKTKATIELIKKLVSENKKTIVWCIFISSIELLENKCEELGLSAISIYGETSMDERLKL 362

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+E+ +G+  +L  +P +    ++L    +  +++   ++L    Q  +RI      + G
Sbjct: 363 IKEFQKGQYDILITNPHTLAESVSLHQVCHDAIYYEYSFNLVHLLQSKDRI-----HRLG 417

Query: 161 F--KRAVFVYYLIAQ-------NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +    YY+ ++        ++D+ +  RL  K  I   +L+A+  + +
Sbjct: 418 LADNQYTQYYYMQSKYIYNEQVYSLDDRIYHRLMEKEKI---MLDAIDHDIL 466


>gi|168205250|ref|ZP_02631255.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
 gi|170663156|gb|EDT15839.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
          Length = 1679

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            K     +  D+    I ++NEG   +L    A CG G+N Q     +    + W     +
Sbjct: 1341 KFIHDAKNNDERVKMISDFNEGNFKILIGSTAKCGEGVNFQKNIVNISHIDVPWKPSSIE 1400

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   R      RQ    + +F    +  ++ D    Q +  K+     +++A
Sbjct: 1401 QRNGRAF----RQGNVNKEIFENRYVTNSSFDAYSWQIVEFKAKYITQIISA 1448


>gi|204305809|ref|YP_002224626.1| gp182 [Mycobacterium phage Cali]
 gi|197312782|gb|ACH63135.1| gp182 [Mycobacterium phage Cali]
          Length = 577

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 19/159 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
           +     KI+ L   +E    +    IV  H+ S      +   +         G+T  + 
Sbjct: 397 QAKFSAKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHHLKVPYVLHYGTGQTARES 456

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 +  +  +        +  HGLN+Q     ++     +  ++  Q   RI     
Sbjct: 457 QAAQDRFKADPDLTCFLTS-DAGSHGLNMQE-ARYVINTDPLYSYDDLTQRNARIDRADS 514

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLL 194
              G       Y +I + + ++  + Q    +  + + +
Sbjct: 515 HLDGL----TAYVMITEESKVENRIWQVCEQRRQLAEAV 549


>gi|320176448|gb|EFW51499.1| N-6 DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 2280

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            L+       ++NEG+  ++  +      G+NL  G   +   +L W      Q   R   
Sbjct: 1460 LEGMEGIAADYNEGRTQIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGAR 1518

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q      V V+Y   + T D+  L  L+ K     +++ +
Sbjct: 1519 VGSPQ----EKVNVHYYCGKGTFDDFRLDTLKRKKDWIKMVMTS 1558


>gi|47225441|emb|CAG11924.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 908

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
                      K+  L  ++      + +  ++V  ++   L  LQ          +   
Sbjct: 562 SSGELSTADSGKLLVLSELLGAIRQLSPSDRVVVVSNYTKTLDLLQDLLDGHMPTGQRQR 621

Query: 100 TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  +N    +  L      + G GLNL  G + LV + + W+     Q+  
Sbjct: 622 LVDSFNSPFSQNFLFLLSSKAGGLGLNL-VGASHLVLYDIDWNPANDIQVKH 672


>gi|256544790|ref|ZP_05472162.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399679|gb|EEU13284.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 3649

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +   +      +  +G+I +L       G G N Q     +    + W   +  Q   
Sbjct: 3094 KAKNNMEKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQRAG 3153

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3154 RIV----RQGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3197


>gi|322705986|gb|EFY97568.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1444

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 40/183 (21%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
              Y +F  +   +++   ++  +  +K                           ++ L  
Sbjct: 1198 AIYSEFNADKLAEIKNVELDGPSFTTKVDTL-----------------------VRHLLW 1234

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
            + E    A  IV              F  G     D   I  +  +    +   H  +  
Sbjct: 1235 LRESDPGAKSIVFSQ----------RFRIGHASIDDVNGIANFKEDPATEVFLLHARAHS 1284

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    + +       +     Q I R+      + G +    V+  +   T++E +
Sbjct: 1285 SGLNLVNASH-VFLCEPLLNTALELQAIARVD-----RIGQQHETTVWLYLVSGTVEESI 1338

Query: 181  LQR 183
               
Sbjct: 1339 YNL 1341


>gi|222083249|ref|YP_002542652.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738629|gb|ACM39467.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1697

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 25/189 (13%)

Query: 15   LQGENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAA 69
            ++ E     N   +   +  Q  + + Y   +    ++          +    +EK+   
Sbjct: 1263 MEDEPDNKLNLLIRNAYRIWQETSHSTYIRPDGKPYDLPGAAQMIFSDLGTINVEKSRG- 1321

Query: 70   PIIVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                AY     +L RL          + + +     +    ++    GK+  L     + 
Sbjct: 1322 --FSAYRWIRDELIRLGVPASEIAFMQEYKKTEAKQRLFGDVR---AGKVRFLIGSSETM 1376

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI     RQ      V ++    Q ++D  
Sbjct: 1377 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHNEVDIFAYATQGSLDAT 1432

Query: 180  VLQRLRTKS 188
            + Q    K+
Sbjct: 1433 MWQNNERKA 1441


>gi|83319889|ref|YP_424576.1| hypothetical protein MCAP_0608 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283775|gb|ABC01707.1| hypothetical protein MCAP_0608 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 514

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 27/199 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPI 71
                +   A + AS  ++  Q++ G       K +      ++  LE + I+K++    
Sbjct: 306 LSYPDDKWIASDDASLWLRTRQISIGF--QGNSKDYYWFDYSRLNKLEQLLIDKSD--NY 361

Query: 72  IVAYHFNSDLARLQKAFPQGRTL----DKDPCTIQEW-----------NEGKIPLLFAHP 116
           I+ Y+++ +   + K   +        + +   I  +              K  ++ A+ 
Sbjct: 362 IIFYNYDPEFDEIYKICKKLDYKIDIWNGNKKDITNYLEYLNLDKKDKANSKKRVIIANY 421

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           +S   G N Q     ++F      L  +        + R  + G K  +  Y  +  N +
Sbjct: 422 SSGSTGNNWQEYDKTILF-----SLATYG--YHAQALKRNHRIGSKNTITYYIFLQDNYL 474

Query: 177 DELVLQRLRTKSTIQDLLL 195
           ++ +L  ++ +      + 
Sbjct: 475 EKSMLDSIKKRQNYNKEIF 493


>gi|315083630|gb|EFT55606.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
          Length = 427

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|299471730|emb|CBN76951.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 708

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L+ GG+ ++ F+             ++   R  + G K  V V+ L+  + ++E ++ R 
Sbjct: 183 LKAGGHRILMFT-------------QMTRDRAHRIGQKHEVRVFRLVTDSPVEERIISRA 229

Query: 185 RTKSTIQDLLLNALK 199
             K  +  L++ A K
Sbjct: 230 TDKLNMTGLVVEAGK 244


>gi|159479316|ref|XP_001697739.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158274107|gb|EDO99891.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 876

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 26/144 (18%)

Query: 59  LEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           L  ++E+ +    ++V  H    L  LQ+   Q R   K      +   G  P      A
Sbjct: 614 LTRLLERVSGPCKVLVFAHHQEVLNGLQEHLKQVRVQLKVMHMRID---GSTPAHERDKA 670

Query: 118 SCGHGLNLQYGG------NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                   Q  G       ++VF  L        Q  +R       + G    V VYYL+
Sbjct: 671 VAAF----QRLGPRTPRVQVVVFVELDQSPSLLVQAEDR-----AHRVGQAAHVHVYYLM 721

Query: 172 AQ-------NTIDELVLQRLRTKS 188
           A+        T+DE +   L  K 
Sbjct: 722 AKGYTLRHAGTLDEQIWAMLERKR 745


>gi|221210324|ref|ZP_03583304.1| helicase domain protein [Burkholderia multivorans CGD1]
 gi|221169280|gb|EEE01747.1| helicase domain protein [Burkholderia multivorans CGD1]
          Length = 1126

 Score = 48.4 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 34/181 (18%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ 90
            LQL +          W+   D K+ AL  +I + +A   ++V   F +D AR   A   
Sbjct: 694 LLQLLSLC------GEWQPAADTKLAALIELINQRHAKDKLLVFTQF-ADTARYLNAQLA 746

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCG---------------------HGLNLQYGG 129
            R + +      +  +         P S G                      G NLQ   
Sbjct: 747 ARDIKQVDEATGQSADPTSLAWRFSPESNGKRGQITKAEELRVLIATDVLSEGQNLQD-A 805

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +I+V + L W +    Q   R+    Q        +  Y  +  + ++ L+  R R K  
Sbjct: 806 HIIVNYDLPWAIIRLIQRAGRVDRIGQ----QSDTILCYSFVPADGVERLINLRARVKQR 861

Query: 190 I 190
           +
Sbjct: 862 L 862


>gi|291086755|ref|ZP_06571656.1| putative MutS domain I [Clostridium sp. M62/1]
 gi|291076845|gb|EFE14209.1| putative MutS domain I [Clostridium sp. M62/1]
          Length = 2973

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 23/183 (12%)

Query: 30   VKCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-- 83
             K  QL     +       +K  K++ +  + ALE  I      P    Y    D+ +  
Sbjct: 2522 DKLTQLVFCDISTPQAAPPQKAAKQLDNPTLHALEDAIPLDKPEPAFTIYE---DIRQKL 2578

Query: 84   LQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            + +  P        +  T  +      +   G++ +L    +  G G N+Q     L   
Sbjct: 2579 IAQGMPANQIAFIHEANTEVRKKELFAKVRTGQVRVLLGSTSKMGAGTNVQDRLVALHDL 2638

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               W   +  Q   RI      + G K   V VY  + + T D  + Q +  K      +
Sbjct: 2639 DCPWRPGDLAQRKGRIE-----RQGNKNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQI 2693

Query: 195  LNA 197
            + +
Sbjct: 2694 MTS 2696


>gi|301299581|ref|ZP_07205844.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852820|gb|EFK80441.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 322

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y KF ++ Y +   + +    + +  +   QL+                 EK+  L  +I
Sbjct: 245 YRKFLKDKYLEFDNQELLGDTALTYLLGLRQLSG------------MYSKEKLDQLSDLI 292

Query: 64  EKANAAPIIVAYHFNSDLARLQK 86
           +      +I+ Y+F  +L  + K
Sbjct: 293 DSTEDR-LIIFYNFERELDEIVK 314


>gi|152990202|ref|YP_001355924.1| hypothetical protein NIS_0453 [Nitratiruptor sp. SB155-2]
 gi|151422063|dbj|BAF69567.1| phage-related protein [Nitratiruptor sp. SB155-2]
          Length = 454

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 32/184 (17%)

Query: 7   FQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++     L+ G+   A ++ +       L  G +  D E  ++ + +EKI+ +    + 
Sbjct: 269 LRKHRILYLENGQEYVADSTMALMNGEYMLTGGGLMIDNE--YQPLSNEKIRYIFEHFDD 326

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           +    + +  HF  +  RL+K F +                           S   G++L
Sbjct: 327 S--KSMAIMAHFVGEQERLKKIFKEADVFSST--------------------SDAEGVDL 364

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             G + L+ +S+ +   ++ Q        RQ     K+ + VYYL+  + ID+ V + + 
Sbjct: 365 -SGYDKLIVYSMSYSTSKYVQ-----RRCRQCNINRKKPIQVYYLLT-DYIDKEVYKSVA 417

Query: 186 TKST 189
            K  
Sbjct: 418 VKKK 421


>gi|300725811|ref|ZP_07059279.1| helicase domain protein [Prevotella bryantii B14]
 gi|299776911|gb|EFI73453.1| helicase domain protein [Prevotella bryantii B14]
          Length = 948

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI- 171
                +   GLNLQ+  ++++ + L W+ +  +Q I R       + G K  V V   + 
Sbjct: 501 MIATEAAAEGLNLQF-CSLVINYDLPWNPQRIEQRISRC-----HRYGQKYDVVVVNFLN 554

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            +N  D  V Q L TK  + + +  A
Sbjct: 555 MRNYADVRVFQLLSTKFKLFNDVFGA 580


>gi|254561064|ref|YP_003068159.1| DNA adenine methyltransferase; methylase and helicase domains
            [Methylobacterium extorquens DM4]
 gi|254268342|emb|CAX24284.1| putative DNA adenine methyltransferase; putative methylase and
            helicase domains [Methylobacterium extorquens DM4]
          Length = 1698

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 65   KANAAPIIVAY-HFNSDLARL------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             A A+    AY    ++L RL             +  +       ++N GK+ +L     
Sbjct: 1310 AAEASRGFSAYRWIRNELVRLGVPASEIAYMQDHKKSEAKQRLFNDFNAGKVRILLGSSE 1369

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+N+Q     L    + W   + +Q   RI     RQ      + ++      ++D
Sbjct: 1370 TMGTGVNVQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEIDIFAYATLGSLD 1425

Query: 178  ELVLQRLRTKS 188
              + Q    K+
Sbjct: 1426 ATMWQNNERKA 1436


>gi|332112207|gb|EGJ12183.1| putative dEAD/DEAH box helicase, SNF2 family protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 911

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-AVF 166
           +I ++ A  A+C  GLNLQ  G  LV   L W+    +Q I RI     ++ G KR  V 
Sbjct: 758 QIRIMVATDAAC-EGLNLQTLG-TLVNVDLPWNPTRLEQRIGRI-----KRFGQKRDTVD 810

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           +  L+ + T+DE +  RL  +
Sbjct: 811 MLNLVNEQTVDEKIYDRLSER 831


>gi|308270688|emb|CBX27298.1| hypothetical protein N47_H21200 [uncultured Desulfobacterium sp.]
          Length = 1120

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 31/162 (19%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTL---------D 95
           K W    D ++ ALE +I K +    ++V   F      L +   +             D
Sbjct: 701 KEWDPREDRQLNALEELINKTHKKDKVLVFTQFADTANYLCEQLKKRGIKSLDCVTGDCD 760

Query: 96  KDPCTIQEW------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           K     Q +             E +I +          G NLQ G +I+V + L W +  
Sbjct: 761 KPTDYAQRFSPISNEKTNIKDTEKEIRV-LITTDVLSEGQNLQDG-HIIVNYDLPWAIIR 818

Query: 144 HQQMIERIGVTRQRQAGFKRAVFV-YYLIAQNTIDELVLQRL 184
             Q   R+      + G K    + Y  + ++ + E +++  
Sbjct: 819 LIQRAGRVD-----RIGQKADKIICYSFLPEDGV-EKIIKLR 854


>gi|295090193|emb|CBK76300.1| DNA methylase [Clostridium cf. saccharolyticum K10]
          Length = 2605

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 21/201 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M+ +   + +    L   +I    +         L N  ++  E+       +      E
Sbjct: 2144 MQIWRDGEADKLTQLVFCDISTPQAKPAKKVAKALDNPTLHALEDAVPLPEPEPAFTVYE 2203

Query: 61   VIIEKANAAPIIV-AYHFNSDLA---RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
             I +K  A  +      F  +     R ++ F + RT             G++ +L    
Sbjct: 2204 DIRQKLIAKGVPADQIAFIHEANTEVRKKELFSKVRT-------------GQVRVLLGST 2250

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            A  G G N+Q     L      W   +  Q   RI    +RQ      V V+  + + T 
Sbjct: 2251 AKMGAGTNVQDRLVALHDLDCPWRPGDLAQRKGRI----ERQGNQNETVHVFRYVTEGTF 2306

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            D  + Q +  K      ++ +
Sbjct: 2307 DAYLWQTVENKQKFISQIMTS 2327


>gi|309790267|ref|ZP_07684836.1| helicase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308227693|gb|EFO81352.1| helicase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 1143

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---QKAFPQGRTLDKDPCT 100
            +  W   HD K+KAL  ++       +++   F   +  L    +A    R +     +
Sbjct: 710 SQGVWNPAHDAKLKALLEVLHDLEGKKVLIFTQFADTVDYLVTQLQAAGIARVVGVTGQS 769

Query: 101 ------IQEWNEGKIPLL-----------FAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                 +Q ++     +                     G NLQ   + +V F L W +  
Sbjct: 770 ENPTACVQRFSPRSNGVGDAALLTNPIDVLIATDVLSEGQNLQD-CDQVVNFDLPWAIIR 828

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             Q   R+    Q        V  +  +    I+ ++  R R +  +++
Sbjct: 829 LIQRAGRVDRIGQ----QSDTVTCHTFLPAAGIEAIIGLRRRVRQRLKE 873


>gi|289764892|ref|ZP_06524270.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
 gi|289716447|gb|EFD80459.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
          Length = 1914

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 1603 SGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKNV 1658

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + +NT D  + Q +  K      ++ +
Sbjct: 1659 EVYRYVTENTFDAYLWQTIENKQKFISQIMTS 1690


>gi|218133843|ref|ZP_03462647.1| hypothetical protein BACPEC_01732 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991218|gb|EEC57224.1| hypothetical protein BACPEC_01732 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1123

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTL-----DKDPC 99
           + WKE  D+K   L V  + +          +N    + +++  P+         D D  
Sbjct: 706 RIWKENADKKSAQL-VFCDLSTPKNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMK 764

Query: 100 TIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             + + +   G++ +L       G G N+Q     L      W   + +Q   RI     
Sbjct: 765 KKELFQKTRKGEVRVLLGSTQKMGAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIV---- 820

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 821 RQGNENPQVDIYRYVTEQTFDAYLYQLVEGKQKFASQIMTS 861


>gi|325186727|emb|CCA21274.1| Fbox protein putative [Albugo laibachii Nc14]
 gi|325187107|emb|CCA21648.1| Fbox protein putative [Albugo laibachii Nc14]
          Length = 946

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 70  PIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +IV   F   + R++           AF  G +  +    ++ +  +  + +L      
Sbjct: 591 KVIVFSQFKEHIWRIRVSCAQQGIRCAAFITGLSATERQRQLKLFRCDPTVQVLCL-TDV 649

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGL+L +  +I  F    WD     Q+I R       + G K AV V  L+   +++E
Sbjct: 650 GAHGLDLSFVSHI-FFADEIWDKSLADQVISR-----AYRIGAKNAVVVEQLVMCGSLEE 703

Query: 179 LVLQRLRTKST 189
            +L  L  K +
Sbjct: 704 -ILHGLHDKGS 713


>gi|121582883|ref|YP_973325.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
 gi|120596145|gb|ABM39583.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
          Length = 1649

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            + +E  ++ SK   C++     VY    +HW E  ++K+  L  +    +         +
Sbjct: 1213 DGLEMDHAGSKLNACIE----NVY----RHWAEGREKKLTQL--VFCDLSTPKAHGFSVY 1262

Query: 78   NSDLARL--------QKAFPQG-RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
                 +L        + AF Q  +T  +     ++   G+I +L       G G N+Q  
Sbjct: 1263 TDMREKLVLMGVPVEEIAFAQDYKTTAQKGELHRKVRSGRIRILQGSTELMGFGTNVQDR 1322

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                      W   + +Q   RI     RQ      VF+Y  + ++T D  + Q L  K+
Sbjct: 1323 LVAEHHLDAPWRPRDVEQRDGRII----RQGNLNEEVFIYRYVTESTFDAYMWQTLERKA 1378

Query: 189  TIQDLLLNALKKETIHV 205
                 ++   K E   V
Sbjct: 1379 GFIAQVMEG-KTEMRSV 1394


>gi|295110781|emb|CBL24734.1| DNA methylase [Ruminococcus obeum A2-162]
          Length = 2686

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L      W   + +Q   RI     RQ      V
Sbjct: 2298 AGQVRILMGSTPKLGAGTNVQDRLLALHHLDCPWKPSDLEQQEGRIL----RQGNQNDKV 2353

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q L  K      ++ +
Sbjct: 2354 KIFRYVTENTFDSYMWQILENKQKFISQIMTS 2385


>gi|308804449|ref|XP_003079537.1| RING finger-like protein (ISS) [Ostreococcus tauri]
 gi|116057992|emb|CAL54195.1| RING finger-like protein (ISS) [Ostreococcus tauri]
          Length = 1539

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 69   APIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
               IV   F   L  +           +     G+T  +    ++ + N+  + +L  + 
Sbjct: 996  KKCIVYSSFRPHLDSIDLALYGARVPHESITRIGQTRFEREEALKTFKNDPDVAVLLLN- 1054

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GL+L +  + +       ++   +Q++ R       + G    V V  L  +NT 
Sbjct: 1055 RAAAEGLDLSF-VSYVFLMEPLSNMSLEEQVVSR-----AHRMGQMDTVHVEVLAMENTA 1108

Query: 177  DELVLQRLRT 186
            +E +L     
Sbjct: 1109 EETMLDVQAE 1118


>gi|256026903|ref|ZP_05440737.1| helicase [Fusobacterium sp. D11]
          Length = 1923

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 1612 SGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKNV 1667

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + +NT D  + Q +  K      ++ +
Sbjct: 1668 EVYRYVTENTFDAYLWQTIENKQKFISQIMTS 1699


>gi|157939711|ref|YP_001497083.1| transcription termination factor NPH-1 [Tanapox virus]
 gi|146746427|gb|ABQ43563.1| transcription termination factor NPH-1 [Tanapox virus]
 gi|146746583|gb|ABQ43718.1| transcription termination factor NPH-1 [Tanapox virus]
          Length = 631

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE------GK 108
           K    E  I ++    I++ Y     + R+       RT D     + E+N+       +
Sbjct: 381 KCLVFEPFINQS-GIEILIIY---FSVFRITSIEFSSRTKDTRIRNVFEFNKESNTNGDQ 436

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVF 166
           I +      S G G++     +I +   + W+    +Q++ R             +R V 
Sbjct: 437 IKVCVFSI-SGGEGISFFSINDIFIL-DMTWNEASLKQIVGRAIRLNSHANTPPNRRYVN 494

Query: 167 VYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           VY++IA+      T+DE ++  ++TKS     L    K+ +I
Sbjct: 495 VYFIIARLSNGEPTVDEDLINIIKTKSKEFLQLFKVFKESSI 536


>gi|153811865|ref|ZP_01964533.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
 gi|149831999|gb|EDM87084.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
          Length = 2592

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L      W   + +Q   RI     RQ      V
Sbjct: 2204 AGQVRILMGSTPKLGAGTNVQDRLLALHHLDCPWKPSDLEQQEGRIL----RQGNQNDKV 2259

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q L  K      ++ +
Sbjct: 2260 KIFRYVTENTFDSYMWQILENKQKFISQIMTS 2291


>gi|12085071|ref|NP_073473.1| 88L protein [Yaba-like disease virus]
 gi|12056247|emb|CAC21326.1| 88L protein [Yaba-like disease virus]
          Length = 631

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE------GK 108
           K    E  I ++    I++ Y     + R+       RT D     + E+N+       +
Sbjct: 381 KCLVFEPFINQS-GIEILIIY---FSVFRITSIEFSSRTKDTRIRNVFEFNKESNTNGDQ 436

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVF 166
           I +      S G G++     +I +   + W+    +Q++ R             +R V 
Sbjct: 437 IKVCVFSI-SGGEGISFFSINDIFIL-DMTWNEASLKQIVGRAIRLNSHANTPPNRRYVN 494

Query: 167 VYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           VY++IA+      T+DE ++  ++TKS     L    K+ +I
Sbjct: 495 VYFIIARLSNGEPTVDEDLINIIKTKSKEFLQLFKVFKESSI 536


>gi|124262809|ref|YP_001023279.1| SNF2 family DNA/RNA helicase [Methylibium petroleiphilum PM1]
 gi|124262055|gb|ABM97044.1| superfamily II DNA/RNA helicases SNF2 family-like protein
           [Methylibium petroleiphilum PM1]
          Length = 585

 Score = 48.0 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 13/139 (9%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPA 117
           A+   +IV        A L +A  + + +         +       +  G   ++     
Sbjct: 409 ASEEKVIVFAWHREVYALLMEALAEFKPVMYTGSESPRQKEEAKNAFINGDARVMLMSLR 468

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +      LQ+   + +F  L W    H Q I R       +         Y+L+A++  D
Sbjct: 469 AGAGTDGLQHVCKVGIFAELDWSPGVHVQCIGRF-----HRDEQDEPSMAYFLLAEDGSD 523

Query: 178 ELVLQRLRTKSTIQDLLLN 196
            ++   +  K T  + + +
Sbjct: 524 PVIADIVGLKKTQLEGVRD 542


>gi|296329092|ref|ZP_06871597.1| SNF2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153811|gb|EFG94624.1| SNF2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 628

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F  +   +      G T +++   I  ++ E +I +L  +P +    ++L    +  +++
Sbjct: 480 FQLEKKGISVGVIYGSTSEEERRDILNKFKEKEIDVLITNPHTLAESVSLHSVCHDAIYY 539

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL-IAQN----TIDELVLQRLRTKSTI 190
              ++L    Q  +RI     ++  + +  F++ + + ++    ++D+ + QRL  K  I
Sbjct: 540 EYSYNLVHLLQSKDRIHRLGLKEGQYTQYYFLHSIFLTRDGFEYSLDQKIYQRLLEKERI 599

Query: 191 QDLLLNALKKETI 203
              +L A+ K+ +
Sbjct: 600 ---MLEAIDKDIL 609


>gi|288870537|ref|ZP_06114461.2| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
 gi|288866818|gb|EFC99116.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
          Length = 1435

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 17/162 (10%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR--LQKAFP--------QGRTLD 95
            K  K++ +  +  LE  I      P    Y    D+ +  + +  P        +  T  
Sbjct: 1004 KAAKQLDNPLLHGLEEAIPLDEPEPAFTIYE---DIRQKLIAQGMPADQIAFIHEANTEV 1060

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +      +   G++ +L    A  G G N+Q     L      W   +  Q   RI    
Sbjct: 1061 RKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQRKGRI---- 1116

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 1117 ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1158


>gi|257893695|ref|ZP_05673348.1| helicase [Enterococcus faecium 1,231,408]
 gi|257830074|gb|EEV56681.1| helicase [Enterococcus faecium 1,231,408]
          Length = 620

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 29/172 (16%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
             K KA   +I+K  +     IV   F S +  L+    +             +D+    
Sbjct: 440 SSKTKATIELIKKLVSENKKTIVWCIFISSIELLENKCEELGLSAISIYGETSMDERLKL 499

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+E+ +G+  +L  +P +    ++L    +  +++   ++L    Q  +RI      + G
Sbjct: 500 IKEFQKGQYDILITNPHTLAESVSLHQVCHDAIYYEYSFNLVHLLQSKDRI-----HRLG 554

Query: 161 F--KRAVFVYYLIAQ-------NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +    YY+ ++        ++D+ +  RL  K  I   +L+A+  + +
Sbjct: 555 LADNQYTQYYYMQSKYIYNEQVYSLDDRIYHRLMEKEKI---MLDAIDHDIL 603


>gi|182676880|ref|YP_001831027.1| helicase domain-containing protein [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182636510|gb|ACB97283.1| helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1693

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              + N GK+  L     + G G+N Q     L    + W   + +Q   RI    +RQ  
Sbjct: 1343 FNDVNAGKVRFLIGSTQTMGTGVNAQQRLIALHHLDVPWLPSDIEQREGRI----ERQGN 1398

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + ++  +A+ ++D    Q L  K+   D+ ++ 
Sbjct: 1399 QNAEIRLFAYVAKGSVDATGWQLLERKARFIDMAMSG 1435


>gi|172039234|ref|YP_001805735.1| hypothetical protein cce_4321 [Cyanothece sp. ATCC 51142]
 gi|171700688|gb|ACB53669.1| hypothetical protein cce_4321 [Cyanothece sp. ATCC 51142]
          Length = 1072

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCT-IQEWN 105
           I+ L+  + +      ++   + + L  L +   +         G    +D    ++ + 
Sbjct: 549 IQCLKQKLAENPKEKFVLFAFYRNTLTYLAERLQEDGIEICLILGGMDKEDKQDKLKSFQ 608

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +     +         G++LQ+    L+ + L W+    +Q I R+    Q+       +
Sbjct: 609 DNNQISVLLSSEVGSEGIDLQF-CRFLINYDLPWNPMRVEQRIGRLDRLNQK----SETI 663

Query: 166 FVYYLIAQNTIDELVLQRL 184
            +     ++TI+E +L+RL
Sbjct: 664 SIINFSLKDTIEEYILERL 682


>gi|154496923|ref|ZP_02035619.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
 gi|150273881|gb|EDN00994.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
          Length = 2317

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 21/184 (11%)

Query: 28   KTVKCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            +  K  QL     +       +K  K + +  + ALE  +      P+   Y    D+ +
Sbjct: 2096 EADKLTQLVFCDISTPQAAPSKKAAKALDNPTLHALEQAVPLEEPEPVFTIYE---DIRQ 2152

Query: 84   --LQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              + +  P        +  T  +      +   G++ +L    A  G G N+Q     L 
Sbjct: 2153 KLIAQGMPADQIAFIHEANTEVRKKELFAKVRTGQVRVLLGSTAKMGAGTNVQDRLVALH 2212

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 W   +  Q   RI    +RQ      V VY  + + T D  + Q +  K      
Sbjct: 2213 DLDCPWRPGDLAQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQ 2268

Query: 194  LLNA 197
            ++ +
Sbjct: 2269 IMTS 2272


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D E+   +V   +K K LE ++E  +    +V      +   L     +      
Sbjct: 431 GGASTDVEQTIHQVSKFQKRKKLEELLEADDPTGTLVFVETKRNADYLASLLSETKFPTT 490

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    ++++  GK+ +L A  +    GL+++   + +V + L   ++++  
Sbjct: 491 SIHGDRLQREREEALRDFKSGKMFILIA-TSVAARGLDIKNVAH-VVNYDLPKSIDDY-- 546

Query: 147 MIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + RIG  R  + G K +A   Y + A   I   +++ L          L  L
Sbjct: 547 -VHRIG--RTGRVGNKGKATSFYDMEADAAIAPDLVKILTQAGQQVPDFLEGL 596


>gi|218133897|ref|ZP_03462701.1| hypothetical protein BACPEC_01786 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991272|gb|EEC57278.1| hypothetical protein BACPEC_01786 [Bacteroides pectinophilus ATCC
           43243]
          Length = 743

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 17/147 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVA-YHFNSDLA-RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           D      E I  K     +      F  D    L+KA    +              G++ 
Sbjct: 282 DGTFNVYEDIKNKLMEKGVPEQEIAFIHDANTELRKAELFAKVR-----------SGQVR 330

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L    A  G G N+Q     L    + W   + +Q   RI     RQ      V ++  
Sbjct: 331 FLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQQEGRIL----RQGNQNDKVKIFRY 386

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + + T D    Q +  K      ++ +
Sbjct: 387 VTEGTFDSYSWQLIENKQKFIGQIMTS 413


>gi|159038639|ref|YP_001537892.1| helicase domain-containing protein [Salinispora arenicola CNS-205]
 gi|157917474|gb|ABV98901.1| helicase domain protein [Salinispora arenicola CNS-205]
          Length = 956

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 95  DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D+    +  + +    + +         G+NL    + L+ + + W L   +Q   RI  
Sbjct: 490 DEQQQIVDAFKQEHAAIRVLVTGDVASEGVNLHAQCHHLIHYDIPWSLIRIEQRNGRIDR 549

Query: 154 TRQRQ 158
            RQRQ
Sbjct: 550 YRQRQ 554


>gi|82539300|ref|XP_724048.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478561|gb|EAA15613.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 986

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T+++     +      + +      + G GLNL    N ++     W+        +R  
Sbjct: 916 TIERQQIIKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNPH-----NDRQA 969

Query: 153 VTRQRQAGFK 162
             R  + G  
Sbjct: 970 EDRVHRLGKS 979


>gi|313813449|gb|EFS51163.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
          Length = 655

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|326426459|gb|EGD72029.1| hypothetical protein PTSG_00045 [Salpingoeca sp. ATCC 50818]
          Length = 1978

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 60   EVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--------- 109
            +  +E  N    +IV   F   L  +  A    RT        + W+  ++         
Sbjct: 1763 QDELEPENKQLKVIVFSQFRDTLNIIGDAII--RTYGSQS-VAEYWSSYRVGELERFRTQ 1819

Query: 110  ---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L         GL+L +  ++++        E   +  E   + R  + G  R+V 
Sbjct: 1820 AACKVLLLST-DGAVGLDLHFVTHLVLMD------EIFDRAKEEQVIARAWRLGNDRSVV 1872

Query: 167  VYYLIAQNTIDELVLQR 183
            V  LI + T++E + + 
Sbjct: 1873 VEQLILRGTVEETLHEL 1889


>gi|289426474|ref|ZP_06428217.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|295131128|ref|YP_003581791.1| hypothetical protein HMPREF0675_4647 [Propionibacterium acnes
           SK137]
 gi|289153202|gb|EFD01920.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|291376494|gb|ADE00349.1| conserved hypothetical protein [Propionibacterium acnes SK137]
 gi|313763502|gb|EFS34866.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313773439|gb|EFS39405.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313793891|gb|EFS41915.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313801282|gb|EFS42533.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808039|gb|EFS46520.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313811492|gb|EFS49206.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313816684|gb|EFS54398.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313819607|gb|EFS57321.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313822069|gb|EFS59783.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313823696|gb|EFS61410.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826020|gb|EFS63734.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313829489|gb|EFS67203.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313831233|gb|EFS68947.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834255|gb|EFS71969.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313839995|gb|EFS77709.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314914800|gb|EFS78631.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314919383|gb|EFS83214.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920709|gb|EFS84540.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314924765|gb|EFS88596.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314930589|gb|EFS94420.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954456|gb|EFS98862.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314957553|gb|EFT01656.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314961948|gb|EFT06049.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314963754|gb|EFT07854.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314974109|gb|EFT18205.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976601|gb|EFT20696.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314984264|gb|EFT28356.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|314986614|gb|EFT30706.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314990970|gb|EFT35061.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315079602|gb|EFT51595.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315081169|gb|EFT53145.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315087051|gb|EFT59027.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315095453|gb|EFT67429.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315099130|gb|EFT71106.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100387|gb|EFT72363.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315109107|gb|EFT81083.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327328489|gb|EGE70251.1| putative helicase [Propionibacterium acnes HL096PA2]
 gi|327329645|gb|EGE71401.1| putative helicase [Propionibacterium acnes HL096PA3]
 gi|327444276|gb|EGE90930.1| hypothetical protein HMPREF9571_02408 [Propionibacterium acnes
           HL043PA2]
 gi|327444844|gb|EGE91498.1| hypothetical protein HMPREF9570_01905 [Propionibacterium acnes
           HL043PA1]
 gi|327446330|gb|EGE92984.1| hypothetical protein HMPREF9568_00911 [Propionibacterium acnes
           HL013PA2]
 gi|327452082|gb|EGE98736.1| hypothetical protein HMPREF9584_02289 [Propionibacterium acnes
           HL092PA1]
 gi|327454881|gb|EGF01536.1| hypothetical protein HMPREF9581_01068 [Propionibacterium acnes
           HL087PA3]
 gi|327457835|gb|EGF04490.1| hypothetical protein HMPREF9586_00412 [Propionibacterium acnes
           HL083PA2]
 gi|328752472|gb|EGF66088.1| hypothetical protein HMPREF9563_02352 [Propionibacterium acnes
           HL020PA1]
 gi|328755287|gb|EGF68903.1| hypothetical protein HMPREF9579_01315 [Propionibacterium acnes
           HL087PA1]
 gi|328758232|gb|EGF71848.1| hypothetical protein HMPREF9588_00871 [Propionibacterium acnes
           HL025PA2]
 gi|328759924|gb|EGF73508.1| putative helicase [Propionibacterium acnes HL099PA1]
          Length = 655

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|292557960|gb|ADE30961.1| putative helicase [Streptococcus suis GZ1]
          Length = 2554

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTL--- 94
            A   +  + W+E  D+K   L V  + +          +N    + +++  P+       
Sbjct: 2130 ACVDNIYRIWEETADKKSAQL-VFCDLSTPKNDGTFSVYNDIRKKLIERGVPESEVRFIH 2188

Query: 95   --DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              D D    + + +   G++ +L       G G N+Q     L      W   + +Q   
Sbjct: 2189 EADTDVKKKELFQKTRKGEVRVLLGSTQKMGAGTNVQDRLIALHDVDCPWRPSDLEQRSG 2248

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 2249 RII----RQGNSNPDVDIYRYVTEQTFDAYLYQLVEGKQKFASQIMTS 2292


>gi|300174909|dbj|BAJ10682.1| hypothetical protein [Streptococcus thermophilus]
          Length = 349

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A     G GLN+Q     +    + W   +  Q   R+     RQ    + V +Y+ 
Sbjct: 1   MLMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNGRLI----RQGNMHQEVDIYHY 56

Query: 171 IAQNTIDELVLQRLRTK 187
           I + + D  + Q    K
Sbjct: 57  ITKGSFDNYLWQTQENK 73


>gi|240144863|ref|ZP_04743464.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257203086|gb|EEV01371.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 641

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 15/146 (10%)

Query: 53  DEKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           D      E I  K     +      F  D            T  +      +   G++  
Sbjct: 168 DGTFNVYEDICNKLKEKGVPPEEIAFIHD----------ANTEKRKAELFAKVRSGQVRF 217

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L    A  G G N+Q     L    + W   + +Q   RI     RQ      V ++  +
Sbjct: 218 LLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQQEGRIL----RQGNMNDKVKIFRYV 273

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            + T D    Q +  K      ++ +
Sbjct: 274 TEGTFDSYSWQLIENKQKFIGQIMTS 299


>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
 gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
          Length = 422

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD-- 97
           E+K +    D+K K L  +I   N   +IV  +          RLQK   +   +  D  
Sbjct: 247 EQKVYITNTDDKFKLLYNLITGMNMDKVIVFANRRDITRRVCDRLQKRGLKVSLISGDVP 306

Query: 98  ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 T++ +  G + +L A     G G+++  G + +V ++L  D E++   + RIG 
Sbjct: 307 QTQRSKTLERFRAGDLQVLIA-TDVAGRGIHI-DGVSHVVNYNLPEDPEDY---VHRIG- 360

Query: 154 TRQRQAG 160
            R  +AG
Sbjct: 361 -RTGRAG 366


>gi|260904350|ref|ZP_05912672.1| putative helicase [Brevibacterium linens BL2]
          Length = 1660

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 27/196 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + + + +   Y D       A   A      LQL    +       W    +    A ++
Sbjct: 1183 RVWEQTRDNEYLDPATGQPAAARGA------LQLVFADIGTPNPDQWNAYDEL---AAQL 1233

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            ++       I   +   SD+ +  + F   R              G + +L       G 
Sbjct: 1234 VLRGMPGESIRFIHEAKSDIDK-AQLFAAAR-------------AGHVAVLIGSTQKMGV 1279

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G N+Q     L      W   +  Q   RI     RQ      V V  L+ + + D  + 
Sbjct: 1280 GTNIQARAVALYHMDCPWRPSDIAQREGRIL----RQGNQNPEVGVVRLVTEKSFDAYMW 1335

Query: 182  QRLRTKSTIQDLLLNA 197
            Q +  K+     ++  
Sbjct: 1336 QAVERKAKFISQIMRG 1351


>gi|302838632|ref|XP_002950874.1| SNF2 family Chromodomain-helicase protein [Volvox carteri f.
            nagariensis]
 gi|300263991|gb|EFJ48189.1| SNF2 family Chromodomain-helicase protein [Volvox carteri f.
            nagariensis]
          Length = 3332

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            ++ A     G G NL    ++++ F   W      Q + R       + G    + V+ L
Sbjct: 1325 IVLATSRILGLGTNLPSVRSVII-FDSDWHPRLDMQALRR-----AFRLGEPGQLAVFRL 1378

Query: 171  IAQNTIDELVLQRLRTKSTIQDL 193
              + T++E +LQ +  +  ++  
Sbjct: 1379 YVRGTVEERLLQLVDRRRGLEQA 1401


>gi|153871418|ref|ZP_02000594.1| helicase-like protein [Beggiatoa sp. PS]
 gi|152072116|gb|EDN69406.1| helicase-like protein [Beggiatoa sp. PS]
          Length = 1042

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 34/199 (17%)

Query: 19  NIEAFN--SASKTVKCLQLANGAV-YYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVA 74
              A N  S++ +    Q  N  +   ++   W+   D K+ AL  ++ + +    +++ 
Sbjct: 594 KWLAANCFSSTLSEHLQQDINALLTILNQAGDWRTSQDTKLNALAELLTQQHPNDKVLIF 653

Query: 75  YHFNSDLARLQKAFPQGRTLDKD------------------PCTIQEW----NEGKIPLL 112
             F      L+K        D +                  P + ++W       +I +L
Sbjct: 654 TQFADTAHYLKKQLLARGLTDLEAVTGQSSQQPTEMAWRFSPVSNEQWDTVKPTDEIRVL 713

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLI 171
            A       G NLQ  G I+V + L W +    Q + R+      + G +   +  Y  +
Sbjct: 714 IA-TDVLSEGQNLQDAG-IVVNYDLPWAIIRLIQRVGRVD-----RIGQQHPNILCYSFL 766

Query: 172 AQNTIDELVLQRLRTKSTI 190
             + I++++  R R K+ +
Sbjct: 767 PADGIEQIIHLRARLKTRL 785


>gi|297821869|ref|XP_002878817.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324656|gb|EFH55076.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 786

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 23/137 (16%)

Query: 59  LEVIIEKANAAPIIVAYHFNS---DLARLQ---KAFPQGRT---------LDKDPCTIQE 103
           L  + +  N   I+V   +      L RL    K +  G+          L     +I +
Sbjct: 571 LVKLCDYTNEK-ILVVSQYVIPLIFLQRLVAKIKGWKDGKETFMIKGDTSLSAREMSINQ 629

Query: 104 WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N      + F    +C   + L  G   ++   +          + R  +      G +
Sbjct: 630 FNNSNDAKIFFVSIKACNEQIGLT-GATRVLMLDI-----IANPCMARQAIELAYHPGQQ 683

Query: 163 RAVFVYYLIAQNTIDEL 179
             V+ Y L+A +T +E 
Sbjct: 684 NKVYSYRLVAADTSEED 700


>gi|294659042|ref|XP_461380.2| DEHA2F23870p [Debaryomyces hansenii CBS767]
 gi|202953572|emb|CAG89787.2| DEHA2F23870p [Debaryomyces hansenii]
          Length = 1781

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 91   GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            GR  +K   +++E+ +   +I     +  +   GL L    +I        +     Q I
Sbjct: 1605 GRRRNK-YDSVEEFKDPQNEITCFLLNAKAQASGLTLVNATHI-FLCEPLVNTSLELQAI 1662

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             RI      + G +R   V+    +NT++E ++     K 
Sbjct: 1663 SRI-----HRIGQRRHTTVWMFAIENTVEESIVLMSTNKR 1697


>gi|306823149|ref|ZP_07456525.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801569|ref|ZP_07695694.1| helicase C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553781|gb|EFM41692.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221881|gb|EFO78168.1| helicase C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 437

 Score = 47.6 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PC 99
           +  KE   +++     ++        I+    N +   L +  P    +           
Sbjct: 273 RVRKETLQDRVNRCVELVNSEPDEQWIIWAGLNDEADMLNRLIPGSVNVKGSMSPEDKAS 332

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              ++ +  IP+L    +    GLN Q     ++F  +    E + Q I R       + 
Sbjct: 333 AFLDFADNGIPVLITKGSMASFGLNWQNCAQ-MIFCGINDSWESYYQSIRRC-----YRF 386

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G KR V ++ +++   ++  + + +  K      L + L
Sbjct: 387 GQKRVVNMHVVVSD--LEREIAENITRKEQQATHLSDEL 423


>gi|160946660|ref|ZP_02093863.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
 gi|158447044|gb|EDP24039.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
          Length = 2913

 Score = 47.6 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2380 KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2435

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2436 SIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|317481229|ref|ZP_07940300.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
 gi|316902562|gb|EFV24445.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
          Length = 1662

 Score = 47.6 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 1/105 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T       I++ N G I +LF   +  G G+N Q     +    + W   + +
Sbjct: 1292 QFIQTAKTEKARKRMIEDMNNGTIRVLFGSTSMLGTGVNAQKRAVAVHHIDIPWRPADLE 1351

Query: 146  QMIERIGVTRQR-QAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R        +      V V     + T+D      L+ K  
Sbjct: 1352 QRNGRAVRKGNTVKLWGNNTVDVIIYGTEKTLDAYKFNLLKNKQM 1396


>gi|289428646|ref|ZP_06430329.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|289158044|gb|EFD06264.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|314978944|gb|EFT23038.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|315089226|gb|EFT61202.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
          Length = 655

 Score = 47.6 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|32470929|ref|NP_863922.1| DEAH ATP-dependent helicase [Rhodopirellula baltica SH 1]
 gi|32443074|emb|CAD71596.1| probable DEAH ATP-dependent helicase [Rhodopirellula baltica SH 1]
          Length = 901

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ  G  L+   L W+    +Q + RI    Q +    R V +  L+
Sbjct: 752 LLVATDAACEGLNLQTLG-TLINVDLPWNPSRLEQRLGRIKRFNQAR----RTVDMLNLV 806

Query: 172 AQNTIDELVLQRLRTK 187
             +T DE V Q L  +
Sbjct: 807 YHDTQDERVYQVLSRR 822


>gi|314968418|gb|EFT12516.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 655

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|29841251|gb|AAP06283.1| similar to XM_051720 TBP associated factor in Homo sapiens
           [Schistosoma japonicum]
          Length = 106

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V VY LI +N+++E ++     K  +   +L
Sbjct: 2   DRAHRIGQLRTVNVYRLITENSVEEQIMNLQAFKLYLATTVL 43


>gi|327334159|gb|EGE75873.1| putative helicase [Propionibacterium acnes HL097PA1]
          Length = 655

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 182 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 241

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 242 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 285


>gi|290969266|ref|ZP_06560791.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780772|gb|EFD93375.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 2905

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2372 KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2427

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2428 SIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2459


>gi|291551202|emb|CBL27464.1| DNA methylase [Ruminococcus torques L2-14]
          Length = 2439

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTL-----DKDPC 99
            + W++  D+K   L V  + +          +N    + +++  P+         D D  
Sbjct: 2022 RIWEKNTDKKSAQL-VFCDLSTPKNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMK 2080

Query: 100  TIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + + +   G++ +L       G G N+Q     L      W   + +Q   RI     
Sbjct: 2081 KKELFQKTRKGEVRVLLGSTQKMGAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIV---- 2136

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 2137 RQGNENPQVDIYRYVTEQTFDAYLYQLVEGKQKFASQIMTS 2177


>gi|322689353|ref|YP_004209087.1| hypothetical protein BLIF_1168 [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460689|dbj|BAJ71309.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 2148

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             ++      G    +      +   G+I +L       G G N+Q     +      W  
Sbjct: 1417 EQIAFVHDAGDNPARREQLFAKVRSGEIRVLMGSTQKLGTGTNVQERLAAIHDLDCPWRP 1476

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + +Q + RI    QRQ      V  Y  + + T D    Q +  K      L+++
Sbjct: 1477 ADLEQRLGRI----QRQGNTYDHVRDYRYVTKGTFDAYSYQTVERKQRFISQLMSS 1528


>gi|75812876|ref|YP_320493.1| helicase-like [Anabaena variabilis ATCC 29413]
 gi|75705632|gb|ABA25304.1| Helicase-like protein [Anabaena variabilis ATCC 29413]
          Length = 840

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 68/225 (30%), Gaps = 47/225 (20%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAV----------YYDEEKHWKEVHDEKIKALEVI 62
            +L    ++A   A       Q    A+            +     +   D +IK LE  
Sbjct: 204 AELDEIEVQAEEDAQMMAATSQATTSALTARELELLEEMSETANAARYQPDPRIKELENW 263

Query: 63  IEKA------------NAAPIIVAYHFNSDLARLQK-----------------AFPQGRT 93
           I               N   +I+   +      LQ+                  F  G +
Sbjct: 264 IRSNLCPNLGEPGATWNDRRVIIFTEYTDTKRYLQQQLEALIAGSDQEHERIDVFHGGMS 323

Query: 94  LDKDPCTIQEWNEG--KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            ++       +N    + PL +     +   G+NLQ     L  F + W+    +Q   R
Sbjct: 324 EERREAIKLAFNTDPSRHPLRILIATDAAREGVNLQNNCADLFHFDVPWNPSRMEQRNGR 383

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           I    QR       V  YY       ++ VL  L  K +TIQ  L
Sbjct: 384 IDRKLQR----SPIVRCYYFALPQRAEDRVLDILIKKTATIQKEL 424


>gi|331002100|ref|ZP_08325619.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330411194|gb|EGG90610.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2661

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2133 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2188

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2189 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2220


>gi|255089038|ref|XP_002506441.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226521713|gb|ACO67699.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2616

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIP------LLF 113
               I+V   F   + ++     +             +    + E+ +  +       LL 
Sbjct: 2479 DERILVFVQFPDLMKQIADVLQEANIKTLKLKGSVHQQTGALDEFQKEDLRKGDARVLLL 2538

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    G NL    + +    L    +   +  E   + R R+ G  + V ++ +I +
Sbjct: 2539 LSRDESASGANLTTANHAIFVHPLLTTTQYEYEASETQAIGRIRRYGQTKMVKIWRMIVR 2598

Query: 174  NTIDELVLQRLRT 186
            ++ID  ++++   
Sbjct: 2599 DSIDAEIIEQRAN 2611


>gi|126434837|ref|YP_001070528.1| helicase domain-containing protein [Mycobacterium sp. JLS]
 gi|126234637|gb|ABN98037.1| helicase domain protein [Mycobacterium sp. JLS]
          Length = 1100

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +Y + ++ L    +     +          +  Q+       D    W    D KI AL 
Sbjct: 643 RYEELRKNLPAKTKWVNSTVFKTTLRKDLERDNQMLT--TMLDRFGSWDSTRDSKINALV 700

Query: 61  VIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI-QEW------ 104
            ++   +    ++V   +      + +A  +              DP  I + +      
Sbjct: 701 DLLRNDHPGEKVLVFTEYVDTAEYVAQALQEASVEKVAVVSGNTDDPADIARRFSPHSNR 760

Query: 105 -----------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                          I +L A       G NLQ   +I+V + L W +    Q   R+  
Sbjct: 761 IPGQEELPEVDPADPIDVLVA-TDVLSEGQNLQDS-HIVVNYDLPWAIIRLIQRAGRVD- 817

Query: 154 TRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G K   VFVY LI+   ++  +  R R ++ +
Sbjct: 818 ----RVGQKSDQVFVY-LISHENVEAQINLRQRIRARL 850


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTL 94
            VY    + W      K + L  +I   N    I+  +   D+A L K+  +       L
Sbjct: 224 FVYCQNGEDW-----AKREMLRELIRDGNVKNAIIFCNRKRDVAVLYKSLSKHGFNAGEL 278

Query: 95  DKD------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             D        T+ ++  G+I LL A   +   GL++    + +  F L W  +++   +
Sbjct: 279 HGDMDQTSRTETLDKFRNGEIMLLAASDVAA-RGLDIPDVSH-VFNFDLPWAADDY---V 333

Query: 149 ERIGVT-RQRQAGFK 162
            RIG T R  + G  
Sbjct: 334 HRIGRTGRAGREGHS 348


>gi|237716188|ref|ZP_04546669.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262407797|ref|ZP_06084345.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|294644813|ref|ZP_06722556.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|229443835|gb|EEO49626.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262354605|gb|EEZ03697.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|292639846|gb|EFF58121.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
          Length = 839

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           D  K  ++   EKI  +  II   +      ++ +   S+   L KA P  + +      
Sbjct: 291 DAAKERRDNMAEKIARVVEIINRPENKDEHFLLWHDLESEREALCKAIPGCKAVYGSQDD 350

Query: 101 ------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I ++  G++  L A P   G GLN QY  +  + F + +   +  Q I RI   
Sbjct: 351 EEADKVIADFKNGRLKYLAAKPEMLGEGLNFQYHCHKAIMF-IDYRFNDKFQAIARI--- 406

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +   K  V +Y + A++  +  + +    K      +++ +
Sbjct: 407 --YRFMQKHPVDLYLVYAES--EGEIFKSFMQKWAQHREMVSKM 446


>gi|313242328|emb|CBY34484.1| unnamed protein product [Oikopleura dioica]
          Length = 763

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 23/156 (14%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN----------- 67
           + +    + K    +++ N   +  ++          +  +E  +  +            
Sbjct: 612 DWDRAEISIKINALIEIINICHHLGDKLIVFSQSVISLDTIEGFLHDSTVTKGYNSDDDE 671

Query: 68  -AAPIIV--AYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCG 120
              P+ V     + + D  R+        T  K    I+ +N+ + P   L      + G
Sbjct: 672 PKVPMFVGNQKWYKNIDYFRI----DGSVTASKRTAFIESFNDLEDPRARLFLVSTKAGG 727

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            G NL  G N ++ F   W+     Q + R+    Q
Sbjct: 728 IGTNL-VGANRVIIFDSSWNPAHDVQSLFRVYRFGQ 762


>gi|220930539|ref|YP_002507448.1| helicase [Clostridium cellulolyticum H10]
 gi|220000867|gb|ACL77468.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 2077

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +          G+  ++       G G N+Q     L      W   + +Q   
Sbjct: 1704 DAKTKKQKESMFSAMRTGEKRIILGSTPKMGTGTNIQNKLVALHHLDCPWRPADIEQRDG 1763

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ      V ++  + ++T D  + Q +  K      ++ +
Sbjct: 1764 RIL----RQGNENEKVEIFRYVTKDTFDGYLWQTVEQKQRFISQIMTS 1807


>gi|50843051|ref|YP_056278.1| putative helicase [Propionibacterium acnes KPA171202]
 gi|50840653|gb|AAT83320.1| putative helicase [Propionibacterium acnes KPA171202]
 gi|315106875|gb|EFT78851.1| protein, SNF2 family [Propionibacterium acnes HL030PA1]
          Length = 958

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 485 EQQQIVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 544

Query: 155 RQRQAGF--------KRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNA 197
            QR +             VF      +   D  VL + L+ +    + L +A
Sbjct: 545 GQRHSPQITTLLLEPSNPVF------RG--DLRVLSRLLKREQEAHEALGDA 588


>gi|313888375|ref|ZP_07822043.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845572|gb|EFR32965.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 3466

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +   +      +  +G+I +L       G G N Q     +    + W   +  Q   
Sbjct: 2915 KAKNNMEKDAIFDKVRKGEIRVLIGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQRAG 2974

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2975 RIV----RQGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3018


>gi|304439303|ref|ZP_07399219.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372222|gb|EFM25812.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 3645

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +   +      +  +G+I +L       G G N Q     +    + W   +  Q   
Sbjct: 3094 KAKNNMEKDAIFDKVRKGEIRVLIGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQRAG 3153

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3154 RIV----RQGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3197


>gi|255084521|ref|XP_002508835.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524112|gb|ACO70093.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1459

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 22/195 (11%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y +   ++   L+ +  E+        +  +L    +  ++           ++ L V  
Sbjct: 853  YVQLPWKMVDALEAQG-ESTKVEYLLARLRELGAAPLEREKGAPGDGDDAGDLERLAVWS 911

Query: 64   EKANAAP--IIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEWNEGKI 109
             +A+  P   IV   F + L  +  A    +              DKD        +  +
Sbjct: 912  RRASGPPPKCIVYSGFRTHLDVIDLALSGAKVNFANIARIGMSRWDKDRALASFRADPDV 971

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     +   GL+L +   + V   L  +    QQ++ R       + G +  V V  
Sbjct: 972  SVLLLD-RAAAEGLDLSFVQRVFVAEPLD-NASLEQQVVSR-----AHRMGQRGTVIVEV 1024

Query: 170  LIAQNTIDELVLQRL 184
            L  + T +E +L   
Sbjct: 1025 LAMRGTAEETLLDVQ 1039


>gi|225868848|ref|YP_002744796.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702124|emb|CAW99793.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2916

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2383 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2438

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2439 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2470


>gi|225870148|ref|YP_002746095.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225699552|emb|CAW93149.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 2913

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2380 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2435

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2436 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|158317173|ref|YP_001509681.1| helicase domain-containing protein [Frankia sp. EAN1pec]
 gi|158112578|gb|ABW14775.1| helicase domain protein [Frankia sp. EAN1pec]
          Length = 1046

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + ++     P+ L         G+NL    + LV   + W L   +Q   RI   
Sbjct: 493 EQERIVDDFKTTASPVRLLITGDVASEGVNLHAQCHHLVHVDIPWSLIRIEQRNGRID-- 550

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKSTIQ 191
              + G K    +  L    + D       VLQRL  K  + 
Sbjct: 551 ---RYGQKHPPQIAALALVPSDDRFSGDVRVLQRLLAKEHLA 589


>gi|307244223|ref|ZP_07526338.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492373|gb|EFM64411.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 2909

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2376 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2431

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2432 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2463


>gi|237742749|ref|ZP_04573230.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229430397|gb|EEO40609.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 768

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 419 NGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKNV 474

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + +NT D  + Q +  K      ++ +
Sbjct: 475 EVYRYVTENTFDAYLWQTIENKQKFISQIMTS 506


>gi|317482924|ref|ZP_07941929.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
            [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915613|gb|EFV37030.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
            [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1899

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             ++      G    +      +   G+I +L       G G N+Q     +      W  
Sbjct: 1531 EQIAFVHDAGDNPARREQLFAKVRSGEIRVLMGSTQKLGTGTNVQERLAAIHDLDCPWRP 1590

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + +Q + RI    QRQ      V  Y  + + T D    Q +  K      L+++
Sbjct: 1591 ADLEQRLGRI----QRQGNTYDHVRDYRYVTEGTFDAYSYQTVERKQRFISQLMSS 1642


>gi|307267227|ref|ZP_07548731.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917751|gb|EFN48021.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 903

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF-KRAVFVYYLIAQNTI 176
           +   GLNLQ  G  L+   L W+    +Q   RI      + G     V++Y +  + ++
Sbjct: 762 AASEGLNLQTLG-TLINLDLPWNPTRLEQRKGRIQ-----RIGQVYDKVYIYNMRYKGSV 815

Query: 177 DELVLQRLRTK 187
           ++ V Q L  +
Sbjct: 816 EDRVHQLLSQR 826


>gi|238614560|ref|XP_002398709.1| hypothetical protein MPER_00645 [Moniliophthora perniciosa FA553]
 gi|215475799|gb|EEB99639.1| hypothetical protein MPER_00645 [Moniliophthora perniciosa FA553]
          Length = 75

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  +   +E   + R  + G  R V    L+ +++I+  ++Q    KS + D  L+
Sbjct: 1   MVIYSPKVEFQAMDRIHRLGQHRPVKAIKLVVEDSIESRIVQLQEKKSAMIDATLS 56


>gi|219883155|ref|YP_002478317.1| helicase domain protein [Cyanothece sp. PCC 7425]
 gi|219867280|gb|ACL47618.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 1049

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +   GL+LQ   + L+ + + W+    +Q   R+    QR A     V +Y+ + + 
Sbjct: 587 AASEGLDLQNYCSRLIHYEIPWNPNRMEQRNGRVDRHGQRAA----EVLIYHFVGKG 639


>gi|171920945|ref|ZP_02696009.2| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
            13 str. ATCC 33698]
 gi|171903181|gb|EDT49470.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
            13 str. ATCC 33698]
          Length = 1871

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T  +      +  +G+I +L       G G N+Q     +    + W   + +Q   
Sbjct: 1320 EANTDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQRSG 1379

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1380 RIV----RQGNENKEVSIYRYVTENTFDSYLWQTIENKQKFISQIMTS 1423


>gi|229829842|ref|ZP_04455911.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
 gi|229791140|gb|EEP27254.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
          Length = 2869

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2394 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2449

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2450 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2481


>gi|323948950|gb|EGB44844.1| hypothetical protein ERKG_04570 [Escherichia coli H252]
          Length = 2278

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            L+       ++NEG+  ++  +      G+NL  G   +   +L W      Q   R   
Sbjct: 1460 LEGMEGIAADYNEGRTRIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGAR 1518

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q      V V+Y   + T D+  L  L+ K     +++ +
Sbjct: 1519 VGSPQ----EKVNVHYYCGKGTFDDFRLDTLKRKKDWIKMVMTS 1558


>gi|323179607|gb|EFZ65170.1| helicase conserved C-terminal domain protein [Escherichia coli 1180]
          Length = 2278

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            L+       ++NEG+  ++  +      G+NL  G   +   +L W      Q   R   
Sbjct: 1460 LEGMEGIAADYNEGRTRIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGAR 1518

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q      V V+Y   + T D+  L  L+ K     +++ +
Sbjct: 1519 VGSPQ----EKVNVHYYCGKGTFDDFRLDTLKRKKDWIKMVMTS 1558


>gi|312622196|ref|YP_004023809.1| helicase domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202663|gb|ADQ45990.1| helicase domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 888

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +GKI L+    A+   GLNLQ  G  L+   L W+    +Q   RI    Q        V
Sbjct: 744 DGKIKLMIGTDAAA-EGLNLQTLGA-LINVDLPWNPIRLEQRQGRIKRIGQ----QFDKV 797

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
           +VY L  +++I++ +   L  +
Sbjct: 798 YVYNLRYKDSIEDKIHAVLSGR 819


>gi|300727020|ref|ZP_07060439.1| SNF2 N-terminal domain protein [Prevotella bryantii B14]
 gi|299775564|gb|EFI72155.1| SNF2 N-terminal domain protein [Prevotella bryantii B14]
          Length = 654

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I+E++       ++ A+P +    ++L    +  ++    ++     Q  +RI  
Sbjct: 521 TREAIIKEFHNPDSEFKVIIANPFAVAESISLHKACHNAIYLERSFNCAHFVQSKDRI-- 578

Query: 154 TRQRQAGFKRAVF--VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G    V    YYLI+Q+T+D  +  RL  K      ++ +
Sbjct: 579 ---HRYGLGPDVVTNYYYLISQDTVDCTINDRLHEKEARMIAIIES 621


>gi|291563865|emb|CBL42681.1| hypothetical protein CK3_32610 [butyrate-producing bacterium SS3/4]
          Length = 416

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              T  +      +   G++  L    A  G G N+Q     L    + W   + +Q   
Sbjct: 15  DANTELRKAELFAKVRSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQQEG 74

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI     RQ      V ++  + + T D    Q +  K      ++ +
Sbjct: 75  RIL----RQGNQNDKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 118


>gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896]
          Length = 3918

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +   +      +  +G++ +L      CG G N Q     +    + W   +  Q   R
Sbjct: 3340 AKNNKEKDAIFDKVRKGEVRVLLGSTGKCGAGTNCQDKLIAIHDLDIPWRPADLSQRAGR 3399

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I     RQ      V ++  I +NT D  + Q L  K      ++ +
Sbjct: 3400 IV----RQGNENSDVRIFRYITENTFDAYLFQTLENKQKYISQIMTS 3442


>gi|283769151|ref|ZP_06342055.1| N-6 DNA Methylase [Bulleidia extructa W1219]
 gi|283104127|gb|EFC05506.1| N-6 DNA Methylase [Bulleidia extructa W1219]
          Length = 2908

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2375 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2430

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2431 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2462


>gi|299144309|ref|ZP_07037389.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518794|gb|EFI42533.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 2878

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2345 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2400

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2401 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2432


>gi|156044490|ref|XP_001588801.1| hypothetical protein SS1G_10348 [Sclerotinia sclerotiorum 1980]
 gi|154694737|gb|EDN94475.1| hypothetical protein SS1G_10348 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 98

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    N +      W+     Q I R+      + G  R V ++  I ++T+++ +  
Sbjct: 24  LNLTIS-NYVYILEPQWNPIVESQAIARVQ-----RIGQNRNVKIFRYIVEDTVEKGIQN 77

Query: 183 RLRTK 187
           R   K
Sbjct: 78  RQSRK 82


>gi|322656978|gb|EFY53262.1| defense against restriction protein [Salmonella enterica subsp.
            enterica serovar Montevideo str. CASC_09SCPH15965]
          Length = 2278

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            L+       ++NEG+  ++  +      G+NL  G   +   +L W      Q   R   
Sbjct: 1460 LEGMEGIAADYNEGRTRIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGAR 1518

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q      V V+Y   + T D+  L  L+ K     +++ +
Sbjct: 1519 VGSPQ----EKVNVHYYCGKGTFDDFRLDTLKRKKDWIKMVMTS 1558


>gi|229829879|ref|ZP_04455948.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
 gi|229791177|gb|EEP27291.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
          Length = 2913

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2380 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2435

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2436 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|310827499|ref|YP_003959856.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
 gi|308739233|gb|ADO36893.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
          Length = 2497

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T  +     ++  +  + +L       G G+N Q     L      W   + +Q   
Sbjct: 2134 DAGTDKQKTALFKKVRKADVRVLMGSTEKMGAGMNAQDKLIALHHADCPWRPADLEQQEG 2193

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ      V VY  I + T D    Q +  K      ++ +
Sbjct: 2194 RIV----RQGNQYEEVNVYRYITEGTFDAYSWQVIEQKQQFISQIMTS 2237


>gi|291166691|gb|EFE28737.1| superfamily II DNA and RNA helicase [Filifactor alocis ATCC 35896]
          Length = 2944

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2411 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2466

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2467 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2498


>gi|302797108|ref|XP_002980315.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
 gi|300151931|gb|EFJ18575.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
          Length = 2030

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 70   PIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
             I+V   +   L  L+ A         + +   +   +I E+ +  + ++        +G
Sbjct: 1112 KILVFSTWQEVLDLLEHALKSNKLSWVRLKQRRQMGSSILEFKKENVQVMLLPIQHGANG 1171

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            LNL    + ++      +     Q I R+      + G +    V+  I
Sbjct: 1172 LNLIEAQH-VILVEPLLNPAVEAQAINRV-----HRIGQRLKTLVHRFI 1214


>gi|156337146|ref|XP_001619808.1| hypothetical protein NEMVEDRAFT_v1g782 [Nematostella vectensis]
 gi|156203704|gb|EDO27708.1| predicted protein [Nematostella vectensis]
          Length = 624

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 18/157 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---KAFPQG- 91
             G     E+   +   +EK   L  I+  A+   + V    ++D   +    + FP   
Sbjct: 438 VGGTTSDIEQTVIEVTDNEKRDRLTQILGDADRTLVFVESKRSADFLAIFLSGEGFPTTS 497

Query: 92  ----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               R   +    + ++ +G+ P+L A       GL++    + ++ F L  D++E+   
Sbjct: 498 IHGDRLQQEREEALDDFRKGRCPVLIA-TNVAARGLDIDDVKH-VINFDLPSDIDEY--- 552

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           + RIG  R  + G K     ++L  +   D+ V + L
Sbjct: 553 VHRIG--RTGRIGNKGKATTFFLRGR---DDKVARGL 584


>gi|154498723|ref|ZP_02037101.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799]
 gi|150272263|gb|EDM99461.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799]
          Length = 2062

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 21/184 (11%)

Query: 28   KTVKCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            +  K  QL     +       +K  K + +  + ALE  +      P+   Y    D+ +
Sbjct: 1609 EADKLTQLVFCDISTPQAAPSKKAAKALDNPTLHALEQAVPLDEPEPVFTVYE---DIRQ 1665

Query: 84   --LQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              + +  P        +  T  +      +   G++ +L    A  G G N+Q     L 
Sbjct: 1666 KLIAQGMPADQIAFIHEANTEVRKKELFAKVRTGQVRVLLGSTAKMGAGTNVQDRLVALH 1725

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 W   +  Q   RI    +RQ      V VY  + + T D  + Q +  K      
Sbjct: 1726 DLDCPWRPGDLAQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQ 1781

Query: 194  LLNA 197
            ++ +
Sbjct: 1782 IMTS 1785


>gi|313836720|gb|EFS74434.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314929874|gb|EFS93705.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314972301|gb|EFT16398.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
          Length = 472

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 140 EQQQVVESFKQSNSPIRVLVTGDVASEGVNLHQQCHELIHFDIPWSLIRIEQRNGRIDRY 199

Query: 155 RQRQAGF 161
            QR +  
Sbjct: 200 GQRHSPQ 206


>gi|26348885|dbj|BAC38082.1| unnamed protein product [Mus musculus]
          Length = 891

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
           A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 796 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 855

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + G G+NL    +  + F   W+ +   Q+ 
Sbjct: 856 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQVT 889


>gi|77404497|ref|YP_345073.1| hypothetical protein pREC1_0012 [Rhodococcus erythropolis PR4]
 gi|77019878|dbj|BAE46253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 2936

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 77   FNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            +      L +   +   +               ++   +G+I +L       G GLN+Q 
Sbjct: 2307 YTEMRDALIRRGMKAEEIAFMHNHNSPKAKAKLMEACRDGRIRVLLTSTKKGGTGLNVQR 2366

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                LV     W   + +Q I RI     RQ      V V  ++A+ + D ++ Q +  K
Sbjct: 2367 ALKQLVNLDPAWTAADMEQRIGRII----RQGNTFDKVSVVNVVARRSYDAMMYQYVARK 2422

Query: 188  STIQDLLLNALKKETI 203
                   +  L++E +
Sbjct: 2423 ----SAFVAQLRREDL 2434


>gi|329765288|ref|ZP_08256868.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138194|gb|EGG42450.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 505

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------------R 83
           A++  ++   K +   KI  L+ IIE       ++   +   +                 
Sbjct: 321 AIHLAKDAQSKGIEHSKILKLKEIIESVPGK-ALIFTSYRDSVDVIFNKLTEMGISAAIL 379

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + K+   G    K   T+Q + +G   +L A       GL++    N ++F+        
Sbjct: 380 IGKSGDTGLKQKKQIETVQNFRDGLFRVLVA-TRVGEEGLDISE-VNQVIFYDNVPSSIR 437

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q        R+ + G K    +  LIA+NTIDE      + K T    +   + K
Sbjct: 438 FVQ--------RRGRTGRKDTGKLVVLIAKNTIDETYYWIGKRKMTAAKSMGEKMTK 486


>gi|221504276|gb|EEE29951.1| DNA repair protein, putative [Toxoplasma gondii VEG]
          Length = 1301

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +L     +   GLNL    +       WW+ +   Q ++RI    Q +
Sbjct: 1254 ILLCSLKAGNVGLNLTR-ASRCYLMDGWWNPQVENQAMKRIWRFGQVR 1300


>gi|237742424|ref|ZP_04572905.1| helicase [Fusobacterium sp. 4_1_13]
 gi|229430072|gb|EEO40284.1| helicase [Fusobacterium sp. 4_1_13]
          Length = 436

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 95  SGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKNV 150

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + +NT D  + Q +  K      ++ +
Sbjct: 151 EVYRYVTENTFDAYLWQTIENKQKFISQIMTS 182


>gi|168004101|ref|XP_001754750.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162693854|gb|EDQ80204.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1128

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 22/137 (16%)

Query: 51   VHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            V  + ++ + VI E+ N A I  +  Y     + +++       T  KDP          
Sbjct: 1007 VFSQFLEHINVIEEQLNGAGIQHVGIYSPMHSMNKMKSL----ATFRKDPGCT------- 1055

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               +     +   GL+L +  + +      WD    +Q++ R       + G  R V V 
Sbjct: 1056 ---VLVMDGTAALGLDLSFVTH-VYLMEPIWDGSVEEQVVSR-----AHRMGATRPVLVE 1106

Query: 169  YLIAQNTIDELVLQRLR 185
             L  + TI++ +L+ L+
Sbjct: 1107 TLAMRGTIEQQMLEYLQ 1123


>gi|297159169|gb|ADI08881.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 605

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGKIPLLFAH 115
              A     +V   F   +  LQ            G T D+     +  ++    +L ++
Sbjct: 431 ANAARGRKTLVWTSFVRSITSLQALLAPFQPAAVHGGTPDRAAELHRFRDDRDCAVLISN 490

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF--KRAVFVYYLIAQ 173
           PA+ G G++L    +  V+    +    + Q ++RI      + G        +  L AQ
Sbjct: 491 PATLGEGISLHQVCHDAVYVDRDFQAGRYLQSLDRI-----HRLGLAPDTKTRITVLAAQ 545

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
            ++D++V  RL  K      +L+
Sbjct: 546 GSVDDIVAMRLAKKLDFMGRILD 568


>gi|57505091|ref|ZP_00371038.1| helicase, Snf2 family [Campylobacter coli RM2228]
 gi|57019134|gb|EAL55847.1| helicase, Snf2 family [Campylobacter coli RM2228]
          Length = 1854

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N A+   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1392 NEAIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1441

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1442 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1501

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1502 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1542


>gi|126664931|ref|ZP_01735914.1| helicase [Marinobacter sp. ELB17]
 gi|126630301|gb|EBA00916.1| helicase [Marinobacter sp. ELB17]
          Length = 186

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +   K  +      + G G+NLQ+  ++L+ + L W+ ++ +Q I R+      
Sbjct: 3   AALVDCFKSDKADI-LVSTEAGGEGINLQF-CSVLINYDLPWNPQKVEQRIGRV-----H 55

Query: 158 QAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K  V V   +  +N  D+ V Q L  K  + + +  A
Sbjct: 56  RYGQKNDVVVVNFVNRKNPADQRVFQLLNEKLKLFEGVFGA 96


>gi|297276138|ref|XP_002808217.1| PREDICTED: LOW QUALITY PROTEIN: transcription activator BRG1-like
            [Macaca mulatta]
          Length = 1724

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1150 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1209

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            + + +NE   +  +      + G GLNLQ   + ++ F   W+ 
Sbjct: 1210 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNP 1252


>gi|257091528|ref|YP_003165171.1| hypothetical protein CAP2UW1_4591 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048537|gb|ACV37724.1| hypothetical protein CAP2UW1_4591 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1097

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               T + +      +L    A+   GLN Q+ G  LV F   W+    +Q I R+    
Sbjct: 825 TREETKRRFKRQDAQVLVCTDAAA-EGLNFQFCGA-LVNFDSPWNPMRIEQRIGRVD--- 879

Query: 156 QRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G +   + +  L+ ++T++  V + LR++ ++   ++  L+ 
Sbjct: 880 --RLGQQFPRIAIVNLMYEDTVETDVYRALRSRISLFTSVVGPLQP 923


>gi|119952794|ref|YP_950168.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951924|gb|ABM10833.1| putative helicase [Arthrobacter aurescens TC1]
          Length = 1829

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
              + +     +  ++          G+I +L    +  G G N+Q     LV     W  
Sbjct: 1408 EHMVRFIHDAKNDNEKGRLFAAARSGQIAVLVGSTSKMGVGTNIQKRAVHLVDMDAPWRP 1467

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + +Q   RI     RQ      V +  ++ + + D  + Q L  KS   + ++  
Sbjct: 1468 ADVEQRHGRIL----RQGNQNPEVRISQVVTKESFDSFMWQGLERKSRFINQIMRG 1519


>gi|317496319|ref|ZP_07954676.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
 gi|316913565|gb|EFV35054.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
          Length = 1714

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1181 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 1236

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1237 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 1268


>gi|126453422|ref|YP_001067908.1| helicase, C-terminal:dead/deah box helicase, n-terminal
           [Burkholderia pseudomallei 1106a]
 gi|242317373|ref|ZP_04816389.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Burkholderia
           pseudomallei 1106b]
 gi|126227064|gb|ABN90604.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Burkholderia pseudomallei 1106a]
 gi|242140612|gb|EES27014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Burkholderia
           pseudomallei 1106b]
          Length = 1043

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNE 106
           KA +  + +      IV   F +    L +              G   DKD   +  + E
Sbjct: 518 KAFKRFMAEDRDTKAIVFTTFRATARYLVERLSAENVEAGLLMGGAEFDKD-AVVSAFRE 576

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF-KRAV 165
            +   +         G++LQ+   ++V + L W+    +Q I RI      + G   + +
Sbjct: 577 DRNCRVLVCTDVAAEGVDLQF-CRLVVNYDLPWNPMRIEQRIGRID-----RIGQMSKRI 630

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+  + ++TID L++ RL  +  + +  L
Sbjct: 631 LVWNFVHKDTIDALIIARLAKRIGVFESTL 660


>gi|297619461|ref|YP_003707566.1| ERCC4 domain protein [Methanococcus voltae A3]
 gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
          Length = 822

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 30/165 (18%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------------QGRTLD 95
           K+  L  ++ +A      +IV   +   ++++ ++                   +G +  
Sbjct: 347 KLDTLLDVVSEAVAQKEKVIVFAQYRDTVSKIVESLKEQDIEALMFVGQSNKDGKGMSQK 406

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I ++    I +     +    G+++    N +VF+          Q   R+    
Sbjct: 407 EQSKAIAKFKS-DIDV-LVSTSVSEEGMDI-SAVNYVVFYEPVPSEIRFIQRRGRVMR-- 461

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               G    V +  LIA+ T DE   +    K      +L  ++K
Sbjct: 462 ----GEGGEVII--LIAKGTRDEGYYRAAIAKEKSMKNILKDMQK 500


>gi|18976936|ref|NP_578293.1| ATP-dependent RNA helicase hepa, putative [Pyrococcus furiosus DSM
           3638]
 gi|18892556|gb|AAL80688.1| ATP-dependent RNA helicase hepa, putative [Pyrococcus furiosus DSM
           3638]
          Length = 940

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 30/157 (19%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ------GRTLDKD------- 97
           D K++ +  I+     N   +I+   F   L  + +  P       G  L+KD       
Sbjct: 374 DSKLEVISDIVAYHIRNGEKVIIFTEFRDTLEYVLERLPDILRRKHGIVLEKDDIAKLHG 433

Query: 98  -------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     I +++E     L         GLNL +  ++++ +   W   + +Q + R
Sbjct: 434 GMKSEEIEREINKFHERAN--LLVSTDVASEGLNL-HVASVVINYEAPWSPIKLEQRVGR 490

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           I      +    R    Y +      D  VL  L  K
Sbjct: 491 IW-----RLNQTRETKAYTIFLATETDLDVLNNLYRK 522


>gi|326777771|ref|ZP_08237036.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658104|gb|EGE42950.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 973

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + +V + L W+   H Q   R+    Q++    R + +Y +   N ID  VL
Sbjct: 556 GVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQKRD-KVRVITLYGI--DNGIDGKVL 612

Query: 182 QRLRTK 187
           + L  K
Sbjct: 613 EVLIAK 618


>gi|70732026|ref|YP_261773.1| hypothetical protein PFL_4690 [Pseudomonas fluorescens Pf-5]
 gi|68346325|gb|AAY93931.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 749

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K +AL  +   EKA    ++    ++       RL+K   Q               +   
Sbjct: 571 KEQALLSLCIEEKAKGRKVLAYTVYSGTRDTTCRLKKVLEQAGLKVAVLRASVDTSRRED 630

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 631 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIVFLQTGYNVYTLQQAARRSW-----RI 684

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K  V V +L    +     LQ +  K  +   
Sbjct: 685 GQKHPVRVIFLGYAGSSQITCLQLMAKKIAVAQS 718


>gi|3599409|gb|AAC62714.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
          Length = 502

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 26/161 (16%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------------KAFPQGRTLDKDPC 99
           KI  LE  +  A     +V   +   +  +                KA  +G    K   
Sbjct: 333 KIPKLEDAVRGARGK-ALVFTSYRDSVDLIHSRLKAAGINSGILIGKAGEKGLKQRKQVE 391

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T+ ++ +G   +          GL++    N+++F+        + Q        R+ + 
Sbjct: 392 TVAKFRDGGYDV-LVSTRVGEEGLDISE-VNLVIFYDNVPSSIRYVQ--------RRGRT 441

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K A  +  L+A+ TIDE      R K +    +   + +
Sbjct: 442 GRKDAGRLIVLMAKGTIDEAYYWIGRRKMSAAKGMGERMNR 482


>gi|326774108|ref|ZP_08233390.1| helicase SNF2 family protein [Actinomyces viscosus C505]
 gi|326636247|gb|EGE37151.1| helicase SNF2 family protein [Actinomyces viscosus C505]
          Length = 1078

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 30/149 (20%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAFPQ------- 90
           + ++   D +++AL  +++              ++V   +   L  +     Q       
Sbjct: 522 RGYQSRPDSRLEALVSMLDAVCRPDGRTWTNERVVVFTEYADTLDWIVSVLRQQGYGERL 581

Query: 91  ----GRTLDKDPCTIQ-EWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               G T   +   I+  +N       + +L A   + G G++LQ   + LV F + ++ 
Sbjct: 582 AVIRGSTSADEREDIRARFNADPTEEDVRVLVA-TDAAGEGIDLQTYCHRLVNFDVPFNP 640

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
              +Q + RI      + G +    ++YL
Sbjct: 641 SRLEQRVGRID-----RYGQRETPTIFYL 664


>gi|86355628|ref|YP_473296.1| Global transactivator [Hyphantria cunea nucleopolyhedrovirus]
 gi|86198233|dbj|BAE72397.1| Global transactivator [Hyphantria cunea nucleopolyhedrovirus]
          Length = 495

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 75/194 (38%), Gaps = 31/194 (15%)

Query: 28  KTVKCLQLANG------AVYYDEEKHWKEVH--DEK----IKALEVIIEKANAAPIIVAY 75
              +  Q+         A  + E+    E      K    ++ ++ +++  N   ++V+ 
Sbjct: 293 LLCRLRQMCCHPTLTKCAAMFTEQARIFEPSYESSKCRGALELVQRVLDTPNDKVVLVSQ 352

Query: 76  H--FNSDLARLQKA------FPQGRTLDKDPCTIQ-EWNEGKIP--LLFAHPASCGHGLN 124
              F   +A L +          G+   ++   ++ ++N    P  ++       G GLN
Sbjct: 353 WVEFLQIVAGLLRHRGVPILLYTGQLRVEERTAVENQFNAIDSPYRVMLMSIKCGGVGLN 412

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQ 182
           L  G +I +     W+ +   Q  +RI      + G K+  +VY ++   +N+I+  +  
Sbjct: 413 LVGGNHI-IMLEPHWNPQIELQAQDRI-----HRMGQKKRTYVYKMLVDEENSIERYIKA 466

Query: 183 RLRTKSTIQDLLLN 196
           R   K T  + + +
Sbjct: 467 RQDKKLTFVNKVFD 480


>gi|298286470|dbj|BAD92550.2| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a4 variant [Homo sapiens]
          Length = 1165

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
               K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 1036 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1095

Query: 101  I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            + + +NE   +  +      + G GLNLQ   + ++ F   W+ 
Sbjct: 1096 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQ-SADTVIIFDSDWNP 1138


>gi|294807616|ref|ZP_06766409.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294445052|gb|EFG13726.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 442

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           D  K  ++   EKI  +  II   +      ++ +   S+   L KA P  + +      
Sbjct: 289 DAAKERRDNMAEKIARVVEIINRPENKDEHFLLWHDLESEREALCKAIPGCKAVYGSQDD 348

Query: 101 ------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I ++  G++  L A P   G GLN QY  +  + F + +   +  Q I RI   
Sbjct: 349 EEADKVIADFKNGRLKYLAAKPEMLGEGLNFQYHCHKAIMF-IDYRFNDKFQAIARI--- 404

Query: 155 RQRQAGFKRAVFVY 168
              +   K  V +Y
Sbjct: 405 --YRFMQKHPVDLY 416


>gi|254241158|ref|ZP_04934480.1| helicase-like protein [Pseudomonas aeruginosa 2192]
 gi|126194536|gb|EAZ58599.1| helicase-like protein [Pseudomonas aeruginosa 2192]
          Length = 910

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYL 170
           L     +   GLNLQ  G  L+   L W+  + +Q I RI     ++ G  R  V +  L
Sbjct: 762 LMIATDAACEGLNLQTLG-TLINVDLPWNPTKLEQRIGRI-----KRFGQTRDKVDMLNL 815

Query: 171 IAQNTIDELVLQRLRTK 187
           + + T+DE V  RL  +
Sbjct: 816 VNEQTVDEKVYDRLSER 832


>gi|254425780|ref|ZP_05039497.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196188203|gb|EDX83168.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1117

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 95  DKDPCTIQEWNEGKI--PL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++       +N      PL +     +   G+NLQ     L  F + W+    +Q   RI
Sbjct: 602 ERREQVKAAFNADPAAHPLRILIATDAAREGVNLQNYCANLFHFDVPWNPSRMEQRNGRI 661

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST-IQDLL 194
                R+      V  YY +     ++ VL  L  K+  IQ+ L
Sbjct: 662 D----RKLQKADLVRCYYFVYSQRAEDRVLDVLVQKTKRIQEEL 701


>gi|311274878|ref|XP_003134494.1| PREDICTED: hypothetical protein LOC100519806 [Sus scrofa]
          Length = 1369

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK---------DPCTIQEWNEGKIP--LLF 113
            A    +++       L  L+    Q R T ++             I  + +      +  
Sbjct: 1246 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 1305

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                + G G+NL    +  + F   W+ +   Q
Sbjct: 1306 LCTRAGGLGINLT-AADTCIIFDSDWNPQNDLQ 1337



 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 16/84 (19%)

Query: 130 NILVFFSLWWDLE-----------EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
           + +  F + W                 Q   R       + G  +AV VY LI +N+ + 
Sbjct: 120 HAMQHFPVPWAAAIVSADMPCMVLLPAQAQARC-----HRIGQSKAVKVYRLITRNSYER 174

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +  +   K  +   +L  + ++ 
Sbjct: 175 EMFDKASLKLGLDKAVLQDINRKG 198


>gi|257125725|ref|YP_003163839.1| helicase [Leptotrichia buccalis C-1013-b]
 gi|257049664|gb|ACV38848.1| helicase domain protein [Leptotrichia buccalis C-1013-b]
          Length = 2131

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V 
Sbjct: 1787 GDVRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQRAGRIV----RQGNENKKVE 1842

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1843 IYRYVTENTFDAYLWQTIENKQKFISQIMTS 1873


>gi|71907843|ref|YP_285430.1| helicase, C-terminal [Dechloromonas aromatica RCB]
 gi|71847464|gb|AAZ46960.1| Helicase, C-terminal [Dechloromonas aromatica RCB]
          Length = 1669

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG++ +L    A  G G N+Q     L      W   + +Q   RI     RQ      V
Sbjct: 1327 EGRVRVLLGSTAKMGVGTNVQTRLTALHHLDAPWRPCDVEQREGRIL----RQGNECEEV 1382

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + + + D  + Q L TK+     ++  
Sbjct: 1383 EIFRYVTEGSFDSYMWQTLETKARFIAQVMKG 1414


>gi|203459025|ref|YP_002224181.1| gp182 [Mycobacterium phage ScottMcG]
 gi|197312472|gb|ACH62827.1| gp182 [Mycobacterium phage ScottMcG]
          Length = 620

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 19/159 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ---------GRTLDKD 97
           +     KI+ L   +E    +    IV  H+ S      +   +         G++  + 
Sbjct: 440 QAKFSAKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHHLKVPYVLHYGTGQSARES 499

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 +  +  +        +  HGLN+Q     ++     +  ++  Q   RI     
Sbjct: 500 QAAQDRFKADPDLTCFLTS-DAGSHGLNMQE-ARYVINTDPLYSYDDLTQRNARIDRADS 557

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLL 194
              G       Y +I + + ++  + Q    +  + + +
Sbjct: 558 HLDGL----TAYVMITEESKVENRIWQVCEQRRQLAEAV 592


>gi|194706134|gb|ACF87151.1| unknown [Zea mays]
          Length = 139

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            QQ ++R       + G  R V VY L    +++E ++++   K  ++ +++
Sbjct: 2   DQQAMDRC-----HRIGQTRPVHVYRLATSYSVEERIIKKAFGKLKLEHVVI 48


>gi|332075663|gb|EGI86131.1| helicase conserved C-terminal domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 784

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G + +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 251 KGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 306

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y  + +NT D  + Q +  K      ++ +
Sbjct: 307 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 338


>gi|296270691|ref|YP_003653323.1| helicase domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296093478|gb|ADG89430.1| helicase domain protein [Thermobispora bispora DSM 43833]
          Length = 945

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 32/210 (15%)

Query: 5   HKFQRELYCDLQGEN-IEAFNSAS--------KTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            +  R    D   E  +E  ++A+           +  +LA      +  +      D K
Sbjct: 399 DELGRSSVLDFTEEEGLEGLDAAAGGRTGEDDDVERLKRLARAFRKIEGPQE-----DAK 453

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----PQGRTL--------DKDPCT 100
           + AL   +++   +    +V   F      + +        + +          +     
Sbjct: 454 LAALISEVKELLDDGYDPVVFCRFIPTAEYVAEHLAAALGKRAQVRHVTGQLPPEARQQV 513

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I++  +     +         G+NLQ     ++ + L W+   H+Q   R+    QR+  
Sbjct: 514 IEDLGKESGRRVLVATDCLSEGVNLQELFQAVIHYDLAWNPTRHEQREGRVDRFGQRKE- 572

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             RAV +Y L   N ID +VL  L  K   
Sbjct: 573 IVRAVTLYGL--DNGIDGVVLDVLIRKHQT 600


>gi|169835045|ref|YP_001715648.1| superfamily II DNA/RNA helicase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409152|gb|ACA57562.1| superfamily II DNA and RNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 826

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGNILVFFSLWWDLEEHQQM 147
            +T  K    I  + EG I +L    +    G+N Q      + L    + W   E  Q+
Sbjct: 475 AKTPAKKQKLINAFKEGDIRILIGSISKMAEGMNAQDRIIATHEL---DVPWKPAEIIQL 531

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R+     RQ      V +Y  + + T D    Q +  K+   +  +  
Sbjct: 532 EGRML----RQGNINSKVRIYRYVCKGTFDAFAWQTISRKANFIEQFMKG 577


>gi|116328103|ref|YP_797823.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331444|ref|YP_801162.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120847|gb|ABJ78890.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125133|gb|ABJ76404.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 569

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGK 108
           EK+KA+++I+EK + + ++V   + + L  + K F       K P   ++     +  GK
Sbjct: 405 EKMKAIDLIMEKHSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGK 464

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I  L          ++L      +     +   +E  Q + RI   +    G       Y
Sbjct: 465 IKSLVVS-KVANFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFY 519

Query: 169 YLIAQNTIDEL 179
            LI+++T +E 
Sbjct: 520 SLISRDTNEER 530


>gi|126697994|ref|YP_001086891.1| putative helicase [Clostridium difficile 630]
 gi|115249431|emb|CAJ67246.1| putative DNA/RNA helicase Tn1549-like,CTn2-Orf18 [Clostridium
            difficile]
          Length = 2907

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2374 KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 2429

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2430 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2461


>gi|315123583|ref|YP_004065588.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018838|gb|ADT66930.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 1935

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N A+   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1469 NEAIEQAEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1518

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1519 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1578

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1579 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1619


>gi|261881069|ref|ZP_06007496.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
 gi|270332187|gb|EFA42973.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
          Length = 736

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA--RLQKAFPQG-RTLDKDPCTI 101
            K  +   +E+++ +  ++ +++   I+       D     L+   P        D    
Sbjct: 279 HKELRYTRNERMEKVAGMVNRSDEQFIV---WIGHDEEGELLRSLIPDAIEVKGSDSKQY 335

Query: 102 QE-----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           ++     + + K  +L         GLN Q   +  +F SL +  E   Q I R      
Sbjct: 336 KKDNLLGFADKKFRVLITKLKIAQFGLNYQN-CHNQIFASLDFSFESTYQGIRR-----S 389

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL---VLQRLRTKSTIQDLLLNALKKETIHV 205
            + G    V +Y +I  +T+  +   +L++ ++   +Q  +  A  +    +
Sbjct: 390 YRFGQTDDVNIYLIIT-DTMQNVRSSILEKQKSFVDMQHKMSEATSRNIKQI 440


>gi|328708028|ref|XP_003243578.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 706

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAF-- 88
           +    +Y +   +    +  K++     L+ +I     + +I+   F   L  L  A   
Sbjct: 522 MECVKLYREFGDNLIGSYSIKLESIVSKLKKVIALDKCSKVIIFSSFEKSLDCLSSALRL 581

Query: 89  -------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        +         N   I  +  +     + L L +    + F     D 
Sbjct: 582 NSIHFMRLNIGCFNSTTVLNNFQNSENITTILINYNIGLNNLKLNF-ATRVFFMEPIMDK 640

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
               Q+++ I      ++   +  +V++ I +++I+E +
Sbjct: 641 SFENQIVDNI------RSKQTKPTYVHHFIIKDSIEEKI 673


>gi|218437090|ref|YP_002375419.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
 gi|218169818|gb|ACK68551.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
          Length = 499

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 10/154 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      D K++ L  +I +     I++  + N+ + R+ + F       + P     
Sbjct: 312 EAKEIASGTDGKLRVLTELISQHYPEAILIFTNDNATVYRISQEFLIPAITHQTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ + EG   +L         G+++     I +  S      E+ Q   R+G   ++ 
Sbjct: 372 DILKRFREGDYKILVTS-HVLNEGVDVPD-ARIAIILSGTGSAREYVQ---RLGRVLRKG 426

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               +   +Y +I ++T +E   +R R     Q+
Sbjct: 427 KTPDKLAILYEVITEDTSEERTSKRRRGAQEQQN 460


>gi|159480590|ref|XP_001698365.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282105|gb|EDP07858.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1182

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 21/176 (11%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAY 75
              EA    ++      +A  A     +    E   +    L  +    +  P    +V  
Sbjct: 996  EEEAAPDPAELEALRMVAARAARDGRQGDNAEYGAKVAALLAELGRMGDEEPDSKALVFS 1055

Query: 76   HFNSDLARLQKAF---------PQGRTLDKDPCTIQEW-NEGKIPLLFA--HPASCGHGL 123
             +   L  + +A            G   +     +Q + ++ K  +L      +    GL
Sbjct: 1056 SWGRLLRLVHEALVANGITCVSLVGGNPEARQAALQTFLHDRKCRVLLLMKSTSGGAAGL 1115

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             L    +         +     Q   RI      + G      V  +IA++T++E 
Sbjct: 1116 TLTV-AHTAFMLEPALNPGLEAQAAARIC-----RLGQDWPTRVVRIIAKDTVEER 1165


>gi|304399085|ref|ZP_07380953.1| SNF2-related protein [Pantoea sp. aB]
 gi|304353325|gb|EFM17704.1| SNF2-related protein [Pantoea sp. aB]
          Length = 2289

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++NEG+ P++  +      G+NL  G       +L W      Q   R      R    +
Sbjct: 1475 DYNEGRTPIIICN-KKAEVGINLHKGTADSHHLTLPWTPASIDQRNGR----GARVGSER 1529

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V+Y   + + DE  L+ L+ K    + ++ +
Sbjct: 1530 DTMRVHYYCGKGSFDEFRLETLQRKKNWINDVMKS 1564


>gi|325914675|ref|ZP_08177016.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325539177|gb|EGD10832.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1048

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 21/214 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            +Y + + +   +    ++      ++    L+  N   Y +E          K + L   
Sbjct: 802  RYRRMKAD--AEQGRSSLNMVALLARISAVLKAGNQPSYKNEYFGSYMPMTSKERYLIER 859

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI 109
                 A    I++         R+                +     +      E+  G  
Sbjct: 860  ASNLAAAGRKILLYVDGPEMSERIAAELNHRGVHAVPFHGKSSIKSRTRRMNSEFRYGPA 919

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   +   GLNL    N ++     W+ +  +Q I R       +      V V +
Sbjct: 920  SVLVASYGTGQTGLNLYQ-ANYVLLAVRAWNSKTERQAIARTL-----RPQQTSEVHVEF 973

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            +    ++DE   Q  + K   +   ++ L+ E +
Sbjct: 974  VHLGGSLDEYQAQVCQWKQVSEFEAIDLLEPEEV 1007


>gi|327479865|gb|AEA83175.1| Helicase conserved C-terminal domain protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 759

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICKAEKAQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLVTNPELVKTGLDLLDFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|290956132|ref|YP_003487314.1| helicase SNF2 family protein [Streptomyces scabiei 87.22]
 gi|260645658|emb|CBG68749.1| putative helicase SNF2 family protein [Streptomyces scabiei 87.22]
          Length = 988

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + +V + L W+   H Q   R+    QR+    R + +Y     N ID  VL
Sbjct: 569 GVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQRKD-QVRVITLYG--DDNGIDGKVL 625

Query: 182 QRLRTK 187
           + L  K
Sbjct: 626 EVLIKK 631


>gi|9634722|ref|NP_039015.1| NPH-I, trancription termination factor [Fowlpox virus]
 gi|6707722|sp|O72907|NTP1_FOWPN RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|7271550|gb|AAF44396.1|AF198100_43 ORF FPV052 NPH-I, trancription termination factor [Fowlpox virus]
 gi|3168981|emb|CAA06401.1| FP-D11 [Fowlpox virus]
 gi|41023344|emb|CAE52598.1| transcription termination factor D11L orthologue [Fowlpox virus
           isolate HP-438/Munich]
          Length = 637

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASC 119
           +++   I++ Y     +  ++ +    RT D    ++ ++N     +G+I  +     S 
Sbjct: 392 RSSGIEILLQYFNVFGITYIEFS---SRTKDIRSKSVSDFNKVDNTDGEITKVCVFSQSG 448

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ---- 173
             G++     +I +   + W+    +Q+I R             +R V VY+++A+    
Sbjct: 449 NEGISFLSINDIFIL-DMTWNEASLKQIIGRAIRLNSHVNNPPERRYVNVYFVVAKLSSG 507

Query: 174 -NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            +++D+++L  +++KS     L    K  +I
Sbjct: 508 RSSVDDILLDIIQSKSKEFSQLYKVFKHSSI 538


>gi|242226668|ref|XP_002477623.1| predicted protein [Postia placenta Mad-698-R]
 gi|220722552|gb|EED77178.1| predicted protein [Postia placenta Mad-698-R]
          Length = 620

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 16/133 (12%)

Query: 77  FNSDLARLQKAFPQGRTL------DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQY 127
           F+  L  LQ    +  TL       +    +  + +     + +L         G N+  
Sbjct: 354 FDPLLKILQMYGIEYETLTGTMSGRRRAEALHNFMQSDAKGVRVLVLS-NVGAVGFNI-A 411

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D  +      K
Sbjct: 412 CANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDK 466

Query: 188 STIQDLLLNALKK 200
           S + +  + + + 
Sbjct: 467 SIMHNAFMGSSRA 479


>gi|241952779|ref|XP_002419111.1| ATP-dependent helicase Rad16, putative; DNA repair protein Rad16
            homologue, putative [Candida dubliniensis CD36]
 gi|223642451|emb|CAX42696.1| ATP-dependent helicase Rad16, putative [Candida dubliniensis CD36]
          Length = 1247

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 30/178 (16%)

Query: 47   HWKEVHDEKIKALE-VIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
            +       K+  L   ++E + N    IV + F      L +     +            
Sbjct: 1048 NILGTSSAKLTYLATSLLENQRNRIKSIVFFEFEDSAYYLIELLEILKIRHIIYANFITP 1107

Query: 96   -KDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             K    + +++   +          L  + A   HGLN+      + F +        Q+
Sbjct: 1108 VKRAQNLYDFSNYDVDKEENQGGICLIMNIAHSSHGLNI-IAATHIYFINP-----VKQE 1161

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL---QRLRTKSTIQDLLLNALKKE 201
             IE   + R  + G K+ V V  L  +   +  +L   ++L+     +D   +A +KE
Sbjct: 1162 SIEAQAIKRAHRIGQKKEVTVKTLYLKGVDELKILSKNEKLKNSKNNKDS-FDAKEKE 1218


>gi|289423014|ref|ZP_06424834.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289156588|gb|EFD05233.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2659

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     +    + W   + +Q   RI     RQ    + V
Sbjct: 2248 KGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQRSGRIV----RQGNENKEV 2303

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2304 SIYRYVTENTFDSYLWQTIENKQKFISQIMTS 2335


>gi|242207817|ref|XP_002469761.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731181|gb|EED85028.1| predicted protein [Postia placenta Mad-698-R]
          Length = 525

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 16/133 (12%)

Query: 77  FNSDLARLQKAFPQGRTL------DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQY 127
           F+  L  LQ    +  TL       +    ++++ +     + +L         G N+  
Sbjct: 371 FDPLLKILQMYGIEYETLTGTMSGRQRAEALRKFMQSDAKGVRVLVLS-NVGAVGFNI-A 428

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D  +      K
Sbjct: 429 CANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDK 483

Query: 188 STIQDLLLNALKK 200
           S + +  + + + 
Sbjct: 484 SIMHNAFMGSSRA 496


>gi|242222623|ref|XP_002477023.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723649|gb|EED77778.1| predicted protein [Postia placenta Mad-698-R]
          Length = 353

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 77  FNSDLARLQKAFPQGRTL------DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQY 127
           F+  L  LQ    +  TL       +    + ++ +     + +L         G N+  
Sbjct: 135 FDPLLKILQMYGIEYETLTGTMSGRRRAEALHKFMQSDAKGVRVLILS-NVGAVGFNI-A 192

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D  +      K
Sbjct: 193 CANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDK 247

Query: 188 STIQDLLLNALKK 200
           S + +  + + + 
Sbjct: 248 SIMHNAFMGSSRA 260


>gi|86609185|ref|YP_477947.1| SNF2 family helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557727|gb|ABD02684.1| helicase, Snf2 family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 903

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYL 170
           L     +   GLNLQ  G  L+   L W+    +Q I RI     ++ G  R  V +  L
Sbjct: 755 LVVATDAACEGLNLQTLG-TLINIDLPWNPSRLEQRIGRI-----KRFGQTRDRVDMLNL 808

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   T DE V + L  +   +  L  +L
Sbjct: 809 VYHGTHDEKVYEVLSQRMKDRYDLFGSL 836


>gi|254523728|ref|ZP_05135783.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
 gi|219721319|gb|EED39844.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
          Length = 4560

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 14/125 (11%)

Query: 73   VAYHFNSDLARLQK--------AFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            V       +ARL +        A   G T  +K        N  +I ++    AS G G+
Sbjct: 2589 VFSTIQDVVARLVEQGIPRDQIALVDGSTSKEKRKEVADRMNRSEIRVVIGSTASLGVGV 2648

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N+Q     +      W   + +Q   R      RQ      V  Y  +  + +D    Q 
Sbjct: 2649 NMQRNLRAMHHLDAPWMPGDLEQRNGR----GHRQGNQWNTVLEYRYLT-DRLDGRRWQV 2703

Query: 184  LRTKS 188
            L  K 
Sbjct: 2704 LAVKD 2708


>gi|58039939|ref|YP_191903.1| ATP-dependent helicase HepA [Gluconobacter oxydans 621H]
 gi|58002353|gb|AAW61247.1| ATP-dependent helicase HepA [Gluconobacter oxydans 621H]
          Length = 926

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 18/133 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----SDLARLQKAFPQ----- 90
            +  +  +   D K+ AL   +       A  ++   +          L++AFP+     
Sbjct: 431 VETARKLRSEPDPKLSALINALTPLIKKGANPVIFCRYVATAEHVRDGLREAFPKLVVES 490

Query: 91  -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      D+    I          +         G+NLQ   + +V + L W+   
Sbjct: 491 VTGLLTPDERRDRVSDMIAADETQSNQRILVATDCLSEGINLQQLFDTVVHYDLSWNPTR 550

Query: 144 HQQMIERIGVTRQ 156
           HQQ   R+    Q
Sbjct: 551 HQQREGRVDRFGQ 563


>gi|242216384|ref|XP_002474000.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726865|gb|EED80801.1| predicted protein [Postia placenta Mad-698-R]
          Length = 349

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G N+    NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D 
Sbjct: 192 GAVGFNI-ACANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDV 245

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +      KS + +  + + + 
Sbjct: 246 FLNNISFDKSIMHNAFMGSSRA 267


>gi|194227610|ref|XP_001502397.2| PREDICTED: SNF2 histone linker PHD RING helicase [Equus caballus]
          Length = 1701

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 18/141 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +E+   K  H  K++A    L+ I  +   A  +V   +   L  + KA   
Sbjct: 1469 FTSEKANQEEDIPVKGSHSTKVEAVVRTLKRIQRRDPGAKALVFSTWQDVLDIISKALTD 1528

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      ++ + E         +I +L     +  +GL +    ++L       +  
Sbjct: 1529 NSMEFAQISRVKTFQENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1587

Query: 143  EHQQMIERIGVTRQRQAGFKR 163
               Q I R+      + G   
Sbjct: 1588 HELQAIGRV-----HRIGQTN 1603


>gi|301163032|emb|CBW22580.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1911

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 1420 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 1479

Query: 146  QMIER 150
            Q   R
Sbjct: 1480 QRNGR 1484


>gi|327354368|gb|EGE83225.1| DNA repair helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 350

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 45  EKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGRTLDKD 97
           ++   ++   K+ A    L     + +   +++   F    S L+ + +    G+++ +D
Sbjct: 54  DRAGHKMPGTKLTAISSCLADWFRRFSRTKVVIFTQFLGMASILSSMCQKNGWGQSVARD 113

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   +    +L     + G G++L      ++ FS                  R  
Sbjct: 114 KHIRTFSKDPAARILICSLRTAGIGVDLTATNKCILAFS------------------RIF 155

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +   +R V    ++ QN+ID+ +      K+   + ++
Sbjct: 156 RIRQQRNVEFVRIVVQNSIDDRIQLIQNEKTDGIEQVI 193


>gi|255019266|ref|ZP_05291392.1| Superfamily II DNA and RNA helicase [Listeria monocytogenes FSL
           F2-515]
          Length = 171

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 35/186 (18%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP---IIVAY-HFNSDLA 82
           +K  KC +        +  + W+E   +K      II   +  P   +   Y      L 
Sbjct: 1   AKLFKCAE--------NVHRIWEETTAQKS---TQIIFSDSGTPKKDVFNVYDEIKHLL- 48

Query: 83  RLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGNI 131
            ++K  P  +           +     ++   G++ +L       G G N+Q     G+ 
Sbjct: 49  -IEKGIPADQVAFIHDCNNDQQRETLFEKVRRGEVRVLLGSTGKLGTGTNVQNKLIAGHH 107

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +      W   +  Q   R+     RQ      V +Y  + + T D  + Q    K    
Sbjct: 108 I---DCPWRPSDLTQRDGRVV----RQGNENDEVQLYRYVTKGTFDSYLWQIQEQKLKYI 160

Query: 192 DLLLNA 197
             ++  
Sbjct: 161 SQVMTG 166


>gi|119026248|ref|YP_910093.1| helicase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765832|dbj|BAF40011.1| helicase [Bifidobacterium adolescentis ATCC 15703]
          Length = 890

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 28/181 (15%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------ 96
           D +       +E +K +  ++ +     +IV   F + L ++          ++      
Sbjct: 685 DLDNMKSPKFEEGLKLIRDLVNQ--GKKVIVWGLFVNTLQKISSRLDDSDIDNRLIYGET 742

Query: 97  ----DPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   I ++     P +    P + G  ++LQ   +  V+F   ++L    Q  +RI
Sbjct: 743 PVDVRKDFIADFRNPNGPAVLVSNPQTLGESVSLQDVVHDAVYFEFNFNLTYMLQSRDRI 802

Query: 152 GVTRQRQAGFKRAVFV-YYLIAQ-------NTIDELVLQRLRTKSTIQDLLLNA--LKKE 201
                 + G     +  Y+++           ID  V +RL+ K       ++   LK E
Sbjct: 803 -----HRLGLPDGQYTRYHIMETINDPTEYGFIDSRVYKRLKYKERRMREAIDGDVLKPE 857

Query: 202 T 202
            
Sbjct: 858 V 858


>gi|315222575|ref|ZP_07864464.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188261|gb|EFU21987.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 2924

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2391 KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2446

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2447 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2478


>gi|302186859|ref|ZP_07263532.1| SNF2 family DNA/RNA helicase [Pseudomonas syringae pv. syringae
           642]
          Length = 954

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 98  PCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             T++++ +   PL L         GLNL Y  + L+ F + W L   QQ   R+     
Sbjct: 486 QQTVEDFGKTHSPLRLLIASDVASEGLNLHYQAHRLIHFDISWSLMVFQQRNGRVD---- 541

Query: 157 RQAGFKRAVFVYYLIAQNTIDELV------LQRLRTKST 189
            + G   A  + YL+ +    E +      ++ L  K  
Sbjct: 542 -RYGQLHAPKIGYLLTE-PRHEKIRGDLRYMEILIDKDE 578


>gi|325284506|ref|YP_004257045.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
 gi|324316680|gb|ADY27791.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
          Length = 471

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---- 99
           E K      + K++ LE I+ +  +   I+  + N+ + R+ + F       + P     
Sbjct: 308 EAKSIAYGTEGKLRVLEEILAQHPSERTIIFTNDNATVYRISREFLIPSITHQTPTKERH 367

Query: 100 -TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  G+  LL         G+++      +V        E     I+R+G  R  +
Sbjct: 368 TLLERFRAGEYRLLVTS-RVLNEGVDVPEASVAVVLSGT--STEREH--IQRLG--RILR 420

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +   +Y +I + T +E + Q+ R 
Sbjct: 421 RAQGKKAVLYEVITEGTTEERISQQRRG 448


>gi|317009412|gb|ADU79992.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
          Length = 2866

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G+I +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2363 DAKTEEQKQDLFKKLNRGEIRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2422

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2423 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2475


>gi|238925906|ref|YP_002939424.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
 gi|238877583|gb|ACR77290.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
          Length = 2560

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++  L    A  G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2185 SGQVRFLIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQREGRII----RQGNHNKKV 2240

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + ++T D  + Q +  K      ++ +
Sbjct: 2241 HIFRYVTESTFDSYMWQLIENKQKFISQIMTS 2272


>gi|295099158|emb|CBK88247.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2848

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 21/154 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            ++  +   +D K    + ++E       I   H  +  AR ++ F + R           
Sbjct: 2456 DDGSFSVYNDLK----KKLMEAGIPEEEIAFIHDANTEARKKELFSKVR----------- 2500

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               G++ +L       G G N+Q     L      W   +  Q + R+     RQ     
Sbjct: 2501 --SGQVRILMGSTQKMGAGTNVQDRLIALHDLDCPWRPSDLAQRLGRLV----RQGNQNP 2554

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V ++  + + T D  + Q +  K      ++ +
Sbjct: 2555 EVEIFRYVTEGTFDAYLYQLVENKQKFIAQIMTS 2588


>gi|116255163|ref|YP_770997.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259811|emb|CAK02905.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1696

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAYHFNSDLARLQKAFPQG 91
               AVY   +    E+          +    +EK        AY F  D   ++   P  
Sbjct: 1280 TGDAVYRRPDGKDFELPGAAQMIFSDLGTMNVEKTRG---FSAYRFIRD-ELIRLGVPAA 1335

Query: 92   RT-----LDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K     + +     GK+  L     + G G+N Q     L    + W   +
Sbjct: 1336 EIAFMQDYKKTEAKQRLFGDVRAGKVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQ 1395

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +Q   RI     RQ      V ++    + ++D  + Q    K+
Sbjct: 1396 IEQREGRIV----RQGNQHDEVDIFAYATEGSLDASMWQNNERKA 1436


>gi|322825682|gb|EFZ30571.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 1019

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT--------- 93
           +K +    + K   +  +++        +++  H    L  L     + +          
Sbjct: 435 QKEYALSWESKRDEIMELVDFLLKKYPKVVLFAHHIKLLDCLMVHVGKLKVSWIRIDGST 494

Query: 94  -LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++  +N+G   +      +C  G+ L      L F  L  D    QQ  +R+ 
Sbjct: 495 PIYSRAASLSRFNQGDARVAIIGITACAVGIQLTAASCAL-FAELPPDATWMQQAEDRL- 552

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT 175
                + G ++ V  +Y++  N+
Sbjct: 553 ----HRPGQEKHVVFFYIVGANS 571


>gi|308808864|ref|XP_003081742.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
 gi|116060208|emb|CAL56267.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
          Length = 1791

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 33/169 (19%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPCT 100
           I  LE  + + ++   ++  H  + L  +++                       D+    
Sbjct: 535 IDWLESDLLRDDSMQFVIFAHHQAVLDAIERDVCMCLEKQNRGTYVRIDGSTPSDERKVL 594

Query: 101 IQEWNEG---------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + ++ EG          + +      + G GL+     + +VF  L  D    +Q   R+
Sbjct: 595 VDKFREGAAVGADGVVSVRIALLSVKAAGTGLDFST-ASCVVFAELPDDASLLEQAEARV 653

Query: 152 GVTRQRQAGFKRAVFVYYLIAQN---TIDELVLQRLRTKSTIQDLLLNA 197
                 + G    V VY+L A+    + DE   QRL ++  +    ++ 
Sbjct: 654 -----HRRGNDSGVNVYFLCARGGACSHDEDRWQRLESQLDVCKEAIDG 697


>gi|71409128|ref|XP_806927.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70870808|gb|EAN85076.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 697

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRT--------- 93
           +K +    + K   +  +++        +++  H    L  L     + +          
Sbjct: 435 QKEYALSWESKRDEIMELVDFLLKKYPKVVLFAHHIKLLDCLMVHVGKLKVSWIRIDGNT 494

Query: 94  -LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++  +N+G   +      +C  G+ L      L F  L  D    QQ  +R+ 
Sbjct: 495 PIYSRAASLSRFNQGDARVAIIGITACAVGIQLTAASCAL-FAELPPDATWMQQAEDRL- 552

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT 175
                + G ++ V  +Y++  N+
Sbjct: 553 ----HRPGQEKHVVFFYIVGANS 571


>gi|290960950|ref|YP_003492132.1| helicase SNF2 family protein [Streptomyces scabiei 87.22]
 gi|260650476|emb|CBG73592.1| putative helicase SNF2 family protein [Streptomyces scabiei 87.22]
          Length = 1001

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 35/163 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-----EVI-IEKANAAPIIVA 74
            A   A+   +  +LA             E    K  AL     E I +   +   ++V 
Sbjct: 423 TAAELAALY-RLSELAA---------DLTEADSAKFAALVRQLREEIGVGPGSDQRVVVF 472

Query: 75  YHFNSDLARLQKAFPQG------------RTLDKDPCT------IQEWNEGKIPL-LFAH 115
                 L  L +  P              R +            ++E+     P+ +   
Sbjct: 473 SERVQTLEWLAQVLPAALGFKGRAARDCVRVMHGGLSDEQQMACVEEFGLADTPVRVLLT 532

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 G+NL    + LV + + W L   +Q   RI    Q +
Sbjct: 533 GDVASEGVNLHRQCHQLVHYDVPWSLIRIEQRNGRIDRYGQAR 575


>gi|328700452|ref|XP_003241262.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
            pisum]
          Length = 1005

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 48   WKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDK 96
             K     KI+     L  +I +     +++  +++  L  L +A  Q        +T  K
Sbjct: 884  IKGSFSTKIECVTLKLMELISQDPNVKVLIFSNWDKALNLLGEALDQNSISYRILKTGTK 943

Query: 97   DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               T++++    KI  L    +    GLNL      + F     +  +  Q I  I    
Sbjct: 944  YKKTLKDFKSKKKINALLMQLSVVSKGLNLTE-ATRIFFMEPIINKADEHQAIGTI---- 998

Query: 156  QRQAGFKR 163
              + G  +
Sbjct: 999  -HRLGQTK 1005


>gi|242787021|ref|XP_002480920.1| DNA repair helicase rad5,16, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218721067|gb|EED20486.1| DNA repair helicase rad5,16, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1135

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            AR+  A    R  D     I  + N  +  +L    A    GLNL    NI+ F+ L   
Sbjct: 960  ARIFHAKLDYRQRD---ILIHSFTNTDECQILIMSLAVNALGLNLHPRCNIMHFYDLPIT 1016

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                 Q I R+     R+ G +  V VY
Sbjct: 1017 KAVMDQAIGRL-----RRFGQQLVVIVY 1039


>gi|321258025|ref|XP_003193785.1| hypothetical protein CGB_D7250W [Cryptococcus gattii WM276]
 gi|317460255|gb|ADV21998.1| Hypothetical protein CGB_D7250W [Cryptococcus gattii WM276]
          Length = 1059

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 30/52 (57%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I + R  + G K+ V V+ L+ + +++E ++ + + K  +  L++  + KET
Sbjct: 142 IRINRAYRYGQKKTVLVFKLMVKGSVEETIMNKGKRKMVLDHLVVQQMGKET 193


>gi|255657327|ref|ZP_05402736.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-23m63]
          Length = 2995

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2460 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRSGRIV----RQGNENNEV 2515

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  I +NT D  + Q +  K      ++ +
Sbjct: 2516 NIYRYITENTFDAYLWQTIENKQKFISQIMTS 2547


>gi|255102544|ref|ZP_05331521.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-63q42]
          Length = 2872

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2337 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRSGRIV----RQGNENNEV 2392

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  I +NT D  + Q +  K      ++ +
Sbjct: 2393 NIYRYITENTFDAYLWQTIENKQKFISQIMTS 2424


>gi|148825511|ref|YP_001290264.1| ATP-dependent helicase HepA [Haemophilus influenzae PittEE]
 gi|189029417|sp|A5UAT0|RAPA_HAEIE RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|148715671|gb|ABQ97881.1| ATP-dependent helicase HepA [Haemophilus influenzae PittEE]
          Length = 923

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPCAKDS 569


>gi|47177046|ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5]
 gi|47115437|emb|CAG28490.1| putative methylase protein [Oligotropha carboxidovorans OM5]
          Length = 1550

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 72   IVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
              AY     +L R+          + F +     +    ++    GK+  L     + G 
Sbjct: 1172 FSAYRWIRDELIRMGVPPSEIAFIQDFKKTEAKQRLFGDVR---AGKVRFLLGSSDTMGT 1228

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+N Q     L    + W   + +Q   RI     RQ      V +Y    + ++D  + 
Sbjct: 1229 GVNAQLRLRALHHLDVPWLPSQIEQREGRIV----RQGNQNDEVDIYAYATEGSLDAQMW 1284

Query: 182  QRLRTKS 188
            Q    K+
Sbjct: 1285 QNNERKA 1291


>gi|301169332|emb|CBW28931.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Haemophilus influenzae
           10810]
          Length = 923

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPCAKDS 569


>gi|325833145|ref|ZP_08165693.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
 gi|325485701|gb|EGC88168.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1860

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L      W   +  Q   RI     RQ      V
Sbjct: 1280 SGEVRVLMGSTQKLGEGTNVQTRLVALHHLDCPWRPSDLAQREGRIL----RQGNENGEV 1335

Query: 166  FVYYLIAQNTIDELVLQRLRTKS 188
             +Y  + + T D  + Q +  K 
Sbjct: 1336 GIYRYVTKGTFDSYMYQTVENKQ 1358


>gi|145635745|ref|ZP_01791439.1| ATP-dependent helicase HepA [Haemophilus influenzae PittAA]
 gi|145267009|gb|EDK07019.1| ATP-dependent helicase HepA [Haemophilus influenzae PittAA]
          Length = 923

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPCAKDS 569


>gi|47213496|emb|CAF91072.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2422

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 57/147 (38%), Gaps = 21/147 (14%)

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
            ++   K++AL +++ K  ++   +++       L  L+      +          T ++ 
Sbjct: 1354 QMDSGKLEALAILLRKLKSDGRRVLIFTQMVKMLDILEAFLDHRKLSYVRVDESFTPEER 1413

Query: 98   PCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++Q++N  +     +  +      G       + ++F+    +     +  E      
Sbjct: 1414 QESMQKFNRDRKVFCSMLTNRCCSTFGTVFD--ADTIIFYDTDLNPSMDVRTQEWCD--- 1468

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G  + + +Y L + N+I+E +L+
Sbjct: 1469 --KIGRSKDIHIYRLESGNSIEEKLLK 1493


>gi|307694006|ref|ZP_07636243.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 1320

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
            +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 893  TLDNPLLHALEGAVPLPEQEPVFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 947

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 948  KELFSKVRT-------------GQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 994

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q   RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 995  AQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1043


>gi|295099470|emb|CBK88559.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2929

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
            +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 2502 TLDNPLLHALEGAVPLPEQEPVFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 2556

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 2557 KELFSKVRT-------------GQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 2603

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q   RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2604 AQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2652


>gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 457

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTL----- 94
           ++K +    D+K   L  I++  +A  IIV  +          RL+KA  +   L     
Sbjct: 299 DQKVYIVAADQKFALLRNIVQLPDAKSIIVFANRRDQTRKLYERLRKAGIRCGILSGEIP 358

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +K   T+Q + +G + +L A     G G+++  G + ++ ++L  D E++   + RIG 
Sbjct: 359 QNKRSQTLQRFKDGDLQVLVA-TDVAGRGIHV-DGVSHVINYTLPEDPEDY---VHRIG- 412

Query: 154 TRQRQAGFKRA 164
            R  +AG    
Sbjct: 413 -RTGRAGATGT 422


>gi|292658861|gb|ADE34301.1| MIP05021p [Drosophila melanogaster]
          Length = 756

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
            +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 649 PDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 708

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             +      + ++     I +      + G G+NL      +  F 
Sbjct: 709 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTFVPCFD 754


>gi|195353647|ref|XP_002043315.1| GM26907 [Drosophila sechellia]
 gi|194127429|gb|EDW49472.1| GM26907 [Drosophila sechellia]
          Length = 1264

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 1146 PDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1205

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              +      + ++     I +      + G G+NL     + +++
Sbjct: 1206 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVSLYY 1250


>gi|46139439|ref|XP_391410.1| hypothetical protein FG11234.1 [Gibberella zeae PH-1]
          Length = 909

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 23/111 (20%)

Query: 87  AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            F            +  + N+  + ++    +    G                 +    +
Sbjct: 800 RFDGKVPQRSRQKVVDNFRNDLSVRVMLLTLSCGAAG-----------------NPTLEE 842

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q + RI      + G  + V       +N+ +  V++R  +K  +  LLL+
Sbjct: 843 QALARI-----HRIGQTQEVTTVRFFMRNSFEHQVIKRQESKKYLAGLLLS 888


>gi|323693253|ref|ZP_08107471.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
 gi|323502736|gb|EGB18580.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
          Length = 2971

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 21/149 (14%)

Query: 53   DEKIKALEVIIEKANAAPI----IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            D      E I +K  A  +    I   H  +   R  + F + R              G+
Sbjct: 2503 DGTFNVYEDIRDKLMAKGVPEIEIAFIHNANTETRKAELFAKVR-------------SGQ 2549

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +  L    A  G G N+Q     L    + W   + +Q   RI     RQ      V ++
Sbjct: 2550 VRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQQEGRIL----RQGNMNDKVKIF 2605

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + + T D    Q +  K      ++ +
Sbjct: 2606 RYVTEGTFDSYSWQLIENKQKFIGQIMTS 2634


>gi|10954867|ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens]
 gi|6498220|dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens]
          Length = 1693

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAY-HFNSDLARL------ 84
              G+VY   +    EV          +    +EK        AY     +L RL      
Sbjct: 1280 TAGSVYLRHDSKPFEVPGAAQMIFSDLGTISVEKTRG---FSAYRWIRDELIRLGVPASE 1336

Query: 85   ---QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                + F +     +    ++    G++  L     + G G+N+Q     L    + W  
Sbjct: 1337 IAFMQDFKKSEAKQRLFGDVR---AGRVRFLIGSSETMGTGVNVQLRLKALHHLDVPWLP 1393

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + +Q   RI     RQ      V ++    + ++D  + Q    K+
Sbjct: 1394 SQIEQREGRIV----RQGNQHDEVDIFAYATEGSLDATMWQNNERKA 1436


>gi|319775342|ref|YP_004137830.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3047]
 gi|317449933|emb|CBY86145.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3047]
          Length = 923

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPCAKDS 569


>gi|145628405|ref|ZP_01784206.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.1-21]
 gi|144980180|gb|EDJ89839.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.1-21]
          Length = 699

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 247 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 295

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 296 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPCAKDS 345


>gi|307244421|ref|ZP_07526532.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
 gi|306492240|gb|EFM64282.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
          Length = 2967

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2434 KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRSGRIV----RQGNENNEV 2489

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2490 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2521


>gi|309791574|ref|ZP_07686071.1| SNF2-related helicase [Oscillochloris trichoides DG6]
 gi|308226395|gb|EFO80126.1| SNF2-related helicase [Oscillochloris trichoides DG6]
          Length = 1093

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 82  ARLQKAFPQGRTLDKDPCTI-QEWNEG--KIPL-LFAHPASCGHGLNLQYGGNILVFFSL 137
            R+  A   G T   +   I + +N    + PL +     +   GLN Q     L  F L
Sbjct: 575 DRI--AVIDGLTSSTNRQEIQRRFNADPAEEPLRILLATDAAREGLNFQAHCADLFHFDL 632

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            W+    +Q   RI     R+      V  +Y +    +++ VL+ L  K+  
Sbjct: 633 PWNPGRIEQRNGRID----RKLQPAPEVRCHYFVLPQRVEDRVLEVLVKKTET 681


>gi|145642183|ref|ZP_01797751.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
 gi|145273107|gb|EDK12985.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.4-21]
          Length = 634

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|119714054|ref|YP_919196.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525963|gb|ABL79333.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 1925

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G + +L       G G N+Q     L      W   +  Q   RI     RQ     +V 
Sbjct: 1535 GHVSVLIGSTEKMGVGTNVQRRAVALHHVDCPWRPADLAQRDGRIM----RQGNLNESVQ 1590

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + +++ D  + Q +  K+   + L+  
Sbjct: 1591 VYRYVTESSFDTYLWQTVERKAKFINQLMRG 1621


>gi|328541568|ref|YP_004301678.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
 gi|326415710|gb|ADZ72772.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
          Length = 1713

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAY-HFNSDLARL---------Q 85
            +Y   +    E+          +    +EK        AY     +L R+          
Sbjct: 1299 IYLRPDGKPYELPGAAQMIFSDLGTINVEKTRG---FSAYRWIRDELIRMGVPATEIAFM 1355

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            + F +     +    ++    GK+  L     + G G+N Q     L    + W   + +
Sbjct: 1356 QDFKKTEAKQRLFGDVR---AGKVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQIE 1412

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            Q   RI     RQ      V +Y    Q ++D  + Q    K+
Sbjct: 1413 QREGRIV----RQGNQHDEVDIYAYATQGSLDATMWQNNERKA 1451


>gi|226322846|ref|ZP_03798364.1| hypothetical protein COPCOM_00618 [Coprococcus comes ATCC 27758]
 gi|225208827|gb|EEG91181.1| hypothetical protein COPCOM_00618 [Coprococcus comes ATCC 27758]
          Length = 720

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++  L    A  G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 345 SGQVRFLIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQREGRII----RQGNHNKKV 400

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + ++T D  + Q +  K      ++ +
Sbjct: 401 HIFRYVTESTFDSYMWQLIENKQKFISQIMTS 432


>gi|171685256|ref|XP_001907569.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942589|emb|CAP68241.1| unnamed protein product [Podospora anserina S mat+]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            + P L  HP S    LNL    ++ +     W+     Q + R+      + G K+ V 
Sbjct: 189 PRYPNLANHPTSRVSRLNLTAANHVYIL-EPQWNPSVESQALSRVA-----RRGQKKTVL 242

Query: 167 VYYLIAQNTID 177
           V   +   T++
Sbjct: 243 VTRYLVHGTVE 253


>gi|167521073|ref|XP_001744875.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776489|gb|EDQ90108.1| predicted protein [Monosiga brevicollis MX1]
          Length = 616

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 86  KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  T       + E+     +P L     +   GL L    N ++           
Sbjct: 528 YLIDGATTAANRSHLLHEFKTAEDMPFLLLSTKANNAGLTLTV-ANHIIMLDAILSPGVE 586

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLI 171
            Q+I R+      + G  R V ++  +
Sbjct: 587 AQLINRV-----HRIGQSRPVTIHKYV 608


>gi|10039331|dbj|BAB13308.1| vasa-related protein CnVAS2 [Hydra vulgaris]
          Length = 890

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 38  GAVYYDEEKHWKEVH-DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
           G    D  +   +V   +K + LE +++ +     +V      D   L     Q      
Sbjct: 672 GGTCTDVTQSVIQVSGTKKRETLENLLQTSGTDQTLVFVEKKRDADFLANFLSQKNFPPT 731

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT +K    ++++  G  P+L A  A    GL++    + ++ + L  D  E+  
Sbjct: 732 ILFADRTREKRESALRDFRNGIAPILVA-TAVAARGLDINDVKH-VINYDLPKDANEY-- 787

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  + G K
Sbjct: 788 -VHRIG--RTGRIGNK 800


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------- 86
             GA    E+K  +     K   L  I++       +V          +           
Sbjct: 428 VGGACSDVEQKLVQVTKFSKRDQLLDILKNTGTERTMVFVETKRQADFIAAFLCRENVAT 487

Query: 87  -AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +    R   +    + ++  GK P+L A  +    GL+++   + +V F L  +++++ 
Sbjct: 488 TSIHGDREQREREQALGDFRSGKCPVLVA-TSVAARGLDIKDVQH-VVNFDLPNNIDDY- 544

Query: 146 QMIERIGVT-RQRQAGF 161
             + RIG T R    G 
Sbjct: 545 --VHRIGRTGRCGNTGQ 559


>gi|237750669|ref|ZP_04581149.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373759|gb|EEO24150.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
          Length = 2282

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            F  D   ++K               Q+ N G+I +L    +  G G N Q     +    
Sbjct: 1374 FVHDFEGIKK-----------ETLSQKINSGEIRVLIGSTSKMGAGSNFQERLAAIHHLD 1422

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGF--KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            L W     +Q   RI     R           +Y  + +   D L+LQ L  K+ I   +
Sbjct: 1423 LDWTPANMEQREGRIIRQGNRLMDLVPDFEARIYTYVTEQMSDSLMLQTLEQKTKIIKQI 1482

Query: 195  LN 196
             +
Sbjct: 1483 QD 1484


>gi|237745126|ref|ZP_04575607.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432355|gb|EEO42567.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 2042

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1702 SGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQRAGRIV----RQGNENEKV 1757

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + ++T D  + Q +  K      ++ +
Sbjct: 1758 EVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1789


>gi|317013330|gb|ADU83938.1| adenine specific DNA methyltransferase [Helicobacter pylori
            Lithuania75]
          Length = 2866

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N GK+ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2363 DAKTEEQKQDLFKKLNRGKVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2422

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2423 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2475


>gi|308067598|ref|YP_003869203.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus
           polymyxa E681]
 gi|305856877|gb|ADM68665.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus
           polymyxa E681]
          Length = 946

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +      + +D+    ++ +       +     +   GLNLQ+  +++V + L W+ +  
Sbjct: 474 KGVLSGIQAVDRRMALVEYF--RDTAEIMIATEAAAEGLNLQF-CSLVVNYDLPWNPQRI 530

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTK 187
           +Q I R       + G +  V V   +  +N  D  V   L  K
Sbjct: 531 EQRIGRC-----HRYGQRSDVVVVNFVNLRNYADMRVYNLLMDK 569


>gi|18381045|gb|AAH22153.1| Ep400 protein [Mus musculus]
          Length = 1185

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I        S   G+NL    + +VF+    +     +  E        + G  + + +
Sbjct: 1   RIFCALLSTHSRATGINLVE-ADTVVFYDNDLNPVMDAKAQEWCD-----RIGRCKDIHI 54

Query: 168 YYLIAQNTIDELVLQ 182
           Y L++ N+I+E +L+
Sbjct: 55  YRLVSGNSIEEKLLK 69


>gi|327309686|ref|XP_003239534.1| hypothetical protein TERG_01519 [Trichophyton rubrum CBS 118892]
 gi|326459790|gb|EGD85243.1| hypothetical protein TERG_01519 [Trichophyton rubrum CBS 118892]
          Length = 309

 Score = 46.1 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ +L         GLNLQ     +V FS         Q I R+     ++ G    V V
Sbjct: 158 RVMVLVCSYNVSSTGLNLQKLCRNVVIFSPPTSKASQDQAIGRV-----KRLGQTHVVHV 212

Query: 168 YYLIAQNT 175
           Y +  +++
Sbjct: 213 YEIRVRDS 220


>gi|294785906|ref|ZP_06751194.1| helicase [Fusobacterium sp. 3_1_27]
 gi|294487620|gb|EFG34982.1| helicase [Fusobacterium sp. 3_1_27]
          Length = 2042

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1702 SGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQRAGRIV----RQGNENEKV 1757

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + ++T D  + Q +  K      ++ +
Sbjct: 1758 EVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1789


>gi|237741482|ref|ZP_04571963.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429130|gb|EEO39342.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 2036

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1696 SGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQRAGRIV----RQGNENEKV 1751

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + ++T D  + Q +  K      ++ +
Sbjct: 1752 EVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1783


>gi|195569675|ref|XP_002102834.1| GD20113 [Drosophila simulans]
 gi|194198761|gb|EDX12337.1| GD20113 [Drosophila simulans]
          Length = 429

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
            +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 316 PDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 375

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             +      + ++     I +      + G G+NL     + +++
Sbjct: 376 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVSLYY 420


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--- 91
           +  GA    E+  ++    +K K LE I+E  +    +V      +   L     +    
Sbjct: 431 IVGGASSDVEQNIYEVTKFQKRKKLEEILESNDPKGTLVFVETKRNADYLASLLSETKFP 490

Query: 92  -------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    ++++  GK+ +L A  +    GL+++   + ++ + L   ++++
Sbjct: 491 TTSIHGDRLQREREEALRDFKSGKMYILIA-TSVAARGLDIRNVAH-VINYDLPKGIDDY 548

Query: 145 QQMIERIGVTRQRQAGFK 162
              + RIG  R  + G K
Sbjct: 549 ---VHRIG--RTGRVGNK 561


>gi|16272558|ref|NP_438774.1| ATP-dependent helicase HepA [Haemophilus influenzae Rd KW20]
 gi|260581430|ref|ZP_05849243.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           RdAW]
 gi|260583227|ref|ZP_05851005.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           NT127]
 gi|1170244|sp|P44781|RAPA_HAEIN RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|1573610|gb|AAC22275.1| ATP-dependent helicase (hepA) [Haemophilus influenzae Rd KW20]
 gi|260091924|gb|EEW75874.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           RdAW]
 gi|260093729|gb|EEW77639.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           NT127]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V VY   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQVYVPCAKDS 569


>gi|194337018|ref|YP_002018812.1| SNF2-related protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309495|gb|ACF44195.1| SNF2-related protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 966

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI- 171
                +   G+NLQ+  +++V + + W+ +  +Q I R       + G +  V V   + 
Sbjct: 506 MIATEAAAEGINLQF-CSLVVNYDMPWNPQRIEQRIGRC-----HRYGQRFDVVVVNFLN 559

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
             N  D  V Q L  K  +   +  A
Sbjct: 560 MANEADNRVFQLLDQKFRLFSGVFGA 585


>gi|260497888|ref|ZP_05816007.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196554|gb|EEW94082.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 2036

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1696 SGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQRAGRIV----RQGNENEKV 1751

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + ++T D  + Q +  K      ++ +
Sbjct: 1752 EVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1783


>gi|116074313|ref|ZP_01471575.1| hypothetical protein RS9916_37722 [Synechococcus sp. RS9916]
 gi|116069618|gb|EAU75370.1| hypothetical protein RS9916_37722 [Synechococcus sp. RS9916]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 14/152 (9%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPC-TIQE 103
             + K+   E +++   A    +++   F   L     R+      GR    +    +  
Sbjct: 349 GAEFKLPEAEQLLQSLRAQQQSVVLFSGFVGPLELLQQRIGGELLTGRLKPGERQAVVDR 408

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G   LLFA   + G G  L +    +V     W   +  Q  +R       + G   
Sbjct: 409 FQAGDNDLLFATYGAGGLGFTL-HRARQVVLLERPWTPGDVDQAEDRC-----HRLGMDG 462

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  ++L      D+LV   + +K+   ++L 
Sbjct: 463 GLTSHWLQL-GVADQLVDGLVASKARQIEVLF 493


>gi|154305675|ref|XP_001553239.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150853171|gb|EDN28363.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 253

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +  +N GK    ++        +GLN+Q+  +  +     +   +  Q + RI  
Sbjct: 121 ERQELLARFNSGKEDPFVMIMSTKLSAYGLNIQHNCSDEIMSGTSFSDPQEGQELARI-- 178

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               + G  R    Y L+ QNT     +Q    K 
Sbjct: 179 ---YRIGQTRISRAYKLVVQNTF----MQVRMNKR 206


>gi|219121053|ref|XP_002185758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582607|gb|ACI65228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1597

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 23/149 (15%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
              KIKAL  + +  +    +V       L  L+  F            G+        + 
Sbjct: 1404 SSKIKAL--LRDLPSEERSVVFSSSAKTLHHLEVVFKGIGIGYQSLFSGQATSTAERAVS 1461

Query: 103  EW-----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            EW     N    P+L     +   GL L     + +    +   EE QQ   R       
Sbjct: 1462 EWHATKANAIPCPVLLVQAGAAASGLTLTKASKMFIM-EPFVRHEEEQQAYARC-----H 1515

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + G    V         +++  +L+  + 
Sbjct: 1516 RYGQTNTVHCKCYYTPVSVESRLLEWRKR 1544


>gi|325002331|ref|ZP_08123443.1| helicase domain-containing protein [Pseudonocardia sp. P1]
          Length = 934

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 95  DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D+    ++E+ +    + +         G+NL    + LV + + W L   +Q   RI  
Sbjct: 474 DEQQRVVREFKQESAKVRILVTGDVASEGVNLHAQCHELVHYDIPWSLIRIEQRNGRID- 532

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKST 189
               + G K    +  L+     +       +L+ L  K +
Sbjct: 533 ----RYGQKHPPRITALLLDPASERFAGDVRILRSLMEKES 569


>gi|207108246|ref|ZP_03242408.1| hypothetical protein HpylH_00918 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 504

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 162 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 221

Query: 150 RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 222 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 274


>gi|126433431|ref|YP_001069122.1| putative helicase [Mycobacterium sp. JLS]
 gi|126233231|gb|ABN96631.1| putative helicase [Mycobacterium sp. JLS]
          Length = 565

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V + L W+    +Q   RI      + G K    ++ ++A++T +  V +RL  K   Q
Sbjct: 1   MVNYDLPWNPNRIEQRFGRI-----HRIGQKNVCQLWNMVARDTREGEVFRRLLDKIQEQ 55

Query: 192 DL 193
             
Sbjct: 56  RA 57


>gi|302799561|ref|XP_002981539.1| hypothetical protein SELMODRAFT_233770 [Selaginella moellendorffii]
 gi|300150705|gb|EFJ17354.1| hypothetical protein SELMODRAFT_233770 [Selaginella moellendorffii]
          Length = 981

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 16/131 (12%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +  R+          D+   T     + ++ +      + G GL+L    N +VF  L  
Sbjct: 439 EFIRIDGHTD---AKDRQKATEIFRQKDEVKVAIVGVTAGGVGLDLSAARN-VVFVELPK 494

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-------LVLQRLRTKSTIQD 192
              E  Q  +R       + G K AV +Y   A+ T DE         L+R+ T +   +
Sbjct: 495 TASELVQAEDR-----AHRRGQKSAVNIYIFCAKETSDECHWQSLSKSLERVTTMTNGSE 549

Query: 193 LLLNALKKETI 203
             +  L+ ET+
Sbjct: 550 DAIPGLEVETL 560


>gi|254197563|ref|ZP_04903985.1| dead/deah box helicase [Burkholderia pseudomallei S13]
 gi|169654304|gb|EDS86997.1| dead/deah box helicase [Burkholderia pseudomallei S13]
          Length = 755

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHF---NSDLARLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +       +RL+    Q               +   
Sbjct: 577 KERELIDICRQEKAAGRKTLVYSVYSGTRDTTSRLKTLLEQDGFKVAVLRASVDASRRED 636

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 637 WIAEQLDRGIDVLITNPDLVKTGLDLLDFP-TIVFMQSGYNVYTLQQAARRSW-----RI 690

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V YL   +T     L  +  K  +   
Sbjct: 691 GQKQPVKVIYLGYADTSQMHCLTLMAKKIAVSQS 724


>gi|313890685|ref|ZP_07824311.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313120933|gb|EFR44046.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1628

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 1095 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 1150

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1151 NIYRYVTENTFDSYLWQTIENKQKFISQIMTS 1182


>gi|190344637|gb|EDK36353.2| hypothetical protein PGUG_00451 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1002

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 91  GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           GR  +K   +++E+ +    I     +  +   GL L    +I        +     Q I
Sbjct: 833 GRRRNK-YDSVEEFKDPSNNITCFLLNAKAQASGLTLINATHI-FLCEPLVNASLELQAI 890

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  +   V+    +NT++E +L     K 
Sbjct: 891 SRI-----HRIGQTKVTTVWLFAIENTVEESILLMSTNKR 925


>gi|255080480|ref|XP_002503820.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226519087|gb|ACO65078.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1445

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++D    +  N+    +      + G G++   G ++++F  L       Q         
Sbjct: 718 ERDAGCDRFKNDDNCRVALVSVTAGGVGIDFSRG-SVVIFVELPLAHLVEQ------AED 770

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           R  + G    V VYYL+A+   +    +RL +
Sbjct: 771 RVHRQGVADPVTVYYLVARGAGEWHDRKRLES 802


>gi|145633818|ref|ZP_01789541.1| ATP-dependent helicase HepA [Haemophilus influenzae 3655]
 gi|144985321|gb|EDJ92156.1| ATP-dependent helicase HepA [Haemophilus influenzae 3655]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+K  +     K   L  I++       +V          +     Q     
Sbjct: 230 VGGACSDVEQKLVQVTKFSKRDQLLDILKNTGTERTMVFVETKRQADFIAAFLCQENVAT 289

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL+++   + +V F L  +++++ 
Sbjct: 290 TSIHGDREQREREQALGDFRSGKCPVLVA-TSVAARGLDIKDVQH-VVNFDLPNNIDDY- 346

Query: 146 QMIERIGVTR 155
             + RIG T 
Sbjct: 347 --VHRIGRTG 354


>gi|320527864|ref|ZP_08029032.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
 gi|320131801|gb|EFW24363.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
          Length = 2915

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2382 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2437

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2438 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2469


>gi|222109151|ref|YP_002551416.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738425|gb|ACM39290.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1701

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 20/170 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAYHFNSDLARLQK 86
            +  Q  +   Y   +    E+          +    +EK+       AY +  D   ++ 
Sbjct: 1277 RLWQDTSQNTYLKPDGKPYELPGAAQMIFSDLGTINVEKSRG---FSAYRWIRD-ELIRM 1332

Query: 87   AFPQGRT-----LDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              P           K     + +     GK+  L     + G G+N Q     L    + 
Sbjct: 1333 GVPPAEIAYMQDYKKTEAKQRLFGDVRAGKVRFLIGSSETMGTGVNAQLRLKALHHLDVP 1392

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            W   + +Q   RI     RQ      V ++    Q ++D  + Q    K+
Sbjct: 1393 WLPSQIEQREGRIV----RQGNQHDEVDIFAYATQGSLDASMWQNNERKA 1438


>gi|217032758|ref|ZP_03438241.1| hypothetical protein HPB128_26g4 [Helicobacter pylori B128]
 gi|298736002|ref|YP_003728527.1| hypothetical protein HPB8_506 [Helicobacter pylori B8]
 gi|216945521|gb|EEC24178.1| hypothetical protein HPB128_26g4 [Helicobacter pylori B128]
 gi|298355191|emb|CBI66063.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 2518

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2049 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2108

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2109 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2161


>gi|47180147|emb|CAG13957.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 110

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT 100
              K + L+ I+   +A    +++     S +  ++  F           G T  +D   
Sbjct: 5   SSGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGL 64

Query: 101 I-QEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           + + +N+   +  +      + G GLNL +  + +V F   W+ 
Sbjct: 65  LLKTFNDPASEYFVFLLSTRAGGLGLNL-HSADTVVIFDSDWNP 107


>gi|309972648|gb|ADO95849.1| ATP-dependent helicase HepA [Haemophilus influenzae R2846]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|71399024|ref|XP_802693.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70864570|gb|EAN81247.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 510

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++  +N+G   +      +C  G+ L      L F  L  D    QQ
Sbjct: 13  RIDGSTPIYSRAASLSRFNQGDARVAIIGITACAVGIQLTAASCAL-FAELPPDATWMQQ 71

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +R+      + G ++ V  +Y++  N+
Sbjct: 72  AEDRL-----HRPGQEKHVVFFYIVGANS 95


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
             GA    E+   +     K + L  +++   +   +V          +     Q     
Sbjct: 439 VGGACSDVEQTFIEVTKFSKREQLVDLLKATGSERTMVFVETKRQADFIATFLSQTKIPT 498

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 499 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 555

Query: 146 QMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             + RIG  R  + G   RAV  Y   A   +   ++  L      
Sbjct: 556 --VHRIG--RTGRCGNTGRAVSFYDQDADGQLARALVTILSKAQQT 597


>gi|146422266|ref|XP_001487074.1| hypothetical protein PGUG_00451 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1002

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 91  GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           GR  +K   +++E+ +    I     +  +   GL L    +I        +     Q I
Sbjct: 833 GRRRNK-YDSVEEFKDPSNNITCFLLNAKAQASGLTLINATHI-FLCEPLVNASLELQAI 890

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI      + G  +   V+    +NT++E +L     K 
Sbjct: 891 SRI-----HRIGQTKVTTVWLFAIENTVEESILLMSTNKR 925


>gi|319897783|ref|YP_004135980.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3031]
 gi|317433289|emb|CBY81664.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3031]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|300779500|ref|ZP_07089358.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505010|gb|EFK36150.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1776

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + RT D+    I+  NEG+I +LF      G G+N Q     +    + W   + +
Sbjct: 1379 RFIQEARTEDQRKELIKATNEGRIRVLFGSTEMLGTGVNAQKRAVAVHHLDIPWRPSDLE 1438

Query: 146  QMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q   R         +  AG K  VF+Y    + ++D      L  K       +  LK  
Sbjct: 1439 QRDGRAVRKGNEIAKFFAGNKVDVFIY--AVEKSLDAYKFNTLANKQ----RFIGQLKSN 1492

Query: 202  TIHV 205
            TI V
Sbjct: 1493 TIAV 1496


>gi|289423818|ref|ZP_06425612.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289155755|gb|EFD04426.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2917

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2384 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2439

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2440 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2471


>gi|145351304|ref|XP_001420022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580255|gb|ABO98315.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1148

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 30/159 (18%)

Query: 52  HDEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-- 108
           H   + ALE  +        + +         R+  + P     D+    + ++ EG   
Sbjct: 554 HQAVLDALEREVC-------VRIQNQNRGSYVRIDGSTPS----DERKVLVDKFREGAQT 602

Query: 109 -------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                  + +      + G GL+     + ++F  L  D    +Q  +R       + G 
Sbjct: 603 REDGVVGVRVALLSVKAAGTGLDFST-ASCVIFAELPDDASLLEQAEDR-----AHRRGN 656

Query: 162 KRAVFVYYLIAQNTI---DELVLQRLRTKSTIQDLLLNA 197
              V VY+L A+      DE    RL ++  +    L+ 
Sbjct: 657 DSGVNVYFLCARGGACAHDEDRWARLESQLDLCREALDG 695


>gi|284504412|ref|YP_003407127.1| zinc finger protein [Marseillevirus]
 gi|282935850|gb|ADB04165.1| zinc finger protein [Marseillevirus]
          Length = 587

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 19/129 (14%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYH----FNS-----DLARLQKAFPQGRTLDKDPCTIQ 102
            K++ +E +++ A      I++       F       D +R+     +G+   K    I 
Sbjct: 466 TKMEHIEELVKNAEKKGMSILIFSSHEDTFRGLKNLLDTSRINYRMVKGQKSVK-EKIIA 524

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+I +L  +      G++LQ   ++++  S+       ++ I+R  V R ++ G K
Sbjct: 525 AYMAGEIRVLLMNATHNASGIDLQRTTDVVLMHSV-------EEHIKRQVVGRAQRLGRK 577

Query: 163 RAVFVYYLI 171
             V V+  +
Sbjct: 578 GRVRVHTFV 586


>gi|220936000|ref|YP_002514899.1| DEAD-like helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997310|gb|ACL73912.1| DEAD-like helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 756

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++V   +        RL+    Q               +   
Sbjct: 579 KERELIDICREEKAAGRKVLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V YL    T     L  +  K T+   
Sbjct: 693 GQKQPVRVIYLGYAATSQMTCLGLMAKKITVSQS 726


>gi|148671574|gb|EDL03521.1| SNF2 histone linker PHD RING helicase, isoform CRA_c [Mus musculus]
          Length = 1610

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1446 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1505

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1506 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1564

Query: 143  EHQQMIERIGVTRQRQAGFKRAV 165
               Q I R+      + G  +++
Sbjct: 1565 HELQAIGRV-----HRIGQTKSI 1582


>gi|91774089|ref|YP_566781.1| helicase-like protein [Methanococcoides burtonii DSM 6242]
 gi|91713104|gb|ABE53031.1| helicase-like protein [Methanococcoides burtonii DSM 6242]
          Length = 1065

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCT 100
            D KI+ L+ I++    +  P IV   +   +  L K+         +  G +       
Sbjct: 661 DDNKIQNLKDILKNNLRDGKPTIVFSQYKDTIDYLYKSLNGDIEKIDYIHGSSDKSKDKL 720

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I ++ +G + ++         G+N+    +I + F L ++     Q   R       +  
Sbjct: 721 IDQFQKGDVDIILT-TDILSEGVNIPRAVSI-INFDLPYNPVLLVQRAGR-----ALRIT 773

Query: 161 FKRAVFVYYLIAQNTID 177
             + + +Y    +  ID
Sbjct: 774 NPKKLLIYNFKPEAEID 790


>gi|329122661|ref|ZP_08251240.1| RNA polymerase-associated protein RapA [Haemophilus aegyptius ATCC
           11116]
 gi|327472675|gb|EGF18104.1| RNA polymerase-associated protein RapA [Haemophilus aegyptius ATCC
           11116]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|319654107|ref|ZP_08008197.1| hypothetical protein HMPREF1013_04817 [Bacillus sp. 2_A_57_CT2]
 gi|317394192|gb|EFV74940.1| hypothetical protein HMPREF1013_04817 [Bacillus sp. 2_A_57_CT2]
          Length = 719

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 37/206 (17%)

Query: 2   KQYHKFQRELYCDLQG-------ENIEAFNSASKTVKCLQLANGAVYY----DEEKHWK- 49
             Y  F +E+Y                 FN A       +   GA Y     D  +    
Sbjct: 362 AAYRVFHKEMYDKCSKLARAGAKGAWSKFNPAVL-NYAARADLGAFYSFMSIDGTEDIIT 420

Query: 50  ----EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA-------RLQKAFPQGRTLD- 95
               E +  K + L   +  E A    +++  ++  +          LQ    + R L+ 
Sbjct: 421 APKLEGYTAKEEWLIDQVKTELAEDRGVVIYNNYTGEYQLNERTQKILQANGVESRILNE 480

Query: 96  ----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               K    +Q++ E  + ++  +      GL+L      L + +L ++   ++  + R 
Sbjct: 481 SNTEKRSEILQKFEEENVKVIICNMKLVEVGLDL------LAWPTLIFNQLSYEVNVVRQ 534

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTID 177
              R  + G  R   V   I   T +
Sbjct: 535 SAKRSHRIGQHRLCKVLVPILNGTQE 560


>gi|306821025|ref|ZP_07454644.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550966|gb|EFM38938.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 2662

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G + +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2133 KGDVRILIGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRSGRII----RQGNENEEV 2188

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2189 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2220


>gi|218264035|ref|ZP_03477952.1| hypothetical protein PRABACTJOHN_03642 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222325|gb|EEC94975.1| hypothetical protein PRABACTJOHN_03642 [Parabacteroides johnsonii
           DSM 18315]
          Length = 648

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        ++ N+G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 273 QFIQCATTERARKRLFEDMNQGRVRVLFGSTSMLGTGVNAQQRAVAVHHLEIPWRPADME 332

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   R    G T +   G    V VY    + T+D      L+ K    + + + 
Sbjct: 333 QRNGRAVRKGNTVKHWGGNVVDVVVYG--TEKTLDAYKFNLLKNKQMFINQINDG 385


>gi|32480772|gb|AAO26656.1| SNF2 histone linker PHD RING helicase isoform C [Mus musculus]
          Length = 1646

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1482 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1541

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1542 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1600

Query: 143  EHQQMIERIGVTRQRQAGFKRAV 165
               Q I R+      + G  +++
Sbjct: 1601 HELQAIGRV-----HRIGQTKSI 1618


>gi|68249315|ref|YP_248427.1| ATP-dependent helicase HepA [Haemophilus influenzae 86-028NP]
 gi|81336260|sp|Q4QMI0|RAPA_HAEI8 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|68057514|gb|AAX87767.1| RNA polymerase associated protein homolog [Haemophilus influenzae
           86-028NP]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|316932252|ref|YP_004107234.1| helicase domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599966|gb|ADU42501.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 921

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 21/132 (15%)

Query: 46  KHWKEV---HDEKIKALEVIIEKANAAPI--IVAYHF----NSDLARLQKAFPQ------ 90
           KH +E+    D K+ AL   +       +  +V   +          L++AFP+      
Sbjct: 432 KHVEELVRKPDPKLTALVDALMPLVKKGVNPVVFCRYLATAEHVRDGLREAFPKLIVESV 491

Query: 91  ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+         E  +  +         G+NLQ   + +V + L W+   H
Sbjct: 492 TGVLTPDERRDRVADMAPADEEKPVQRILVATDCLSEGINLQQLFDTVVHYDLSWNPTRH 551

Query: 145 QQMIERIGVTRQ 156
           QQ   R+    Q
Sbjct: 552 QQREGRVDRFGQ 563


>gi|210134644|ref|YP_002301083.1| DNA methylase [Helicobacter pylori P12]
 gi|210132612|gb|ACJ07603.1| DNA methylase [Helicobacter pylori P12]
          Length = 2808

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2339 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2398

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2399 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2451


>gi|300814911|ref|ZP_07095142.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511001|gb|EFK38270.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2848

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2315 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2370

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2371 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2402


>gi|291530019|emb|CBK95604.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2877

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 20/164 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDK 96
            + W+E  D+K+  L +  + +          +     +L +            +  T  K
Sbjct: 2460 RIWEENSDKKLTQL-LFCDLSTPKGAGEFSVYTDIRQKLIEHGIPESEIKFIHEADTEAK 2518

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++   G++ +L       G G N+Q      + L      W   + +Q   R   
Sbjct: 2519 KQELFKKVRRGEVRILMGSTQKMGAGTNVQNKIIASHDL---DCPWRPADLEQRAGRTV- 2574

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RQ      V +Y  + + T D    Q +  K      ++ +
Sbjct: 2575 ---RQGNENPKVGLYRYVTEGTFDAYCWQLVEGKQKFSSQIMTS 2615


>gi|254976974|ref|ZP_05273446.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255651892|ref|ZP_05398794.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260687151|ref|YP_003218285.1| putative helicase [Clostridium difficile R20291]
 gi|260213168|emb|CBE04620.1| putative helicase [Clostridium difficile R20291]
          Length = 2909

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2376 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2431

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2432 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2463


>gi|251788102|ref|YP_003002823.1| DEAD-like helicase [Dickeya zeae Ech1591]
 gi|247536723|gb|ACT05344.1| DEAD-like helicase [Dickeya zeae Ech1591]
          Length = 759

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 21/148 (14%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 581 KEQELIDICKQEKAEGRKTLVYSVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYTLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G  + V V YL    T     L  +  K
Sbjct: 695 GQTQPVKVIYLGYAATSQMTCLALMAKK 722


>gi|126699473|ref|YP_001088370.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile 630]
          Length = 3011

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2478 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2533

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2534 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2565


>gi|328887631|emb|CAJ68736.2| putative DNA/RNA helicase Tn1549-like,CTn5-Orf21 [Clostridium
            difficile]
          Length = 2993

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2460 KGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENEKV 2515

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2516 NIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2547


>gi|317180791|dbj|BAJ58577.1| hypothetical protein HPF32_0995 [Helicobacter pylori F32]
          Length = 1183

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 670 DAKTEEQKQDLFKKLNRGEVMVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 729

Query: 150 RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 730 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 782


>gi|118576367|ref|YP_876110.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
 gi|118194888|gb|ABK77806.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
          Length = 558

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 26/161 (16%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------------KAFPQGRTLDKDPC 99
           KI  LE  +  A     +V   +   +  +                KA  +G    K   
Sbjct: 388 KIPKLEEAVRGAKGK-ALVFTSYRDSVDLIHSKLQAAGINSGILIGKAGEKGLKQKKQVE 446

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T+ ++ +G   +          GL++    N++VF+        + Q        R+ + 
Sbjct: 447 TVAKFRDGGYDV-LVSTRVGEEGLDISE-VNLVVFYDNVPSSIRYVQ--------RRGRT 496

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K A  +  L+A+ TIDE      R K T    + + + K
Sbjct: 497 GRKDAGKLVVLMAKGTIDEAYYWIGRRKITAARGMGDRMNK 537


>gi|145640056|ref|ZP_01795652.1| ATP-dependent helicase HepA [Haemophilus influenzae PittII]
 gi|145270840|gb|EDK10761.1| ATP-dependent helicase HepA [Haemophilus influenzae PittII]
 gi|309751620|gb|ADO81604.1| ATP-dependent helicase HepA [Haemophilus influenzae R2866]
          Length = 923

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFAAN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|196048159|ref|ZP_03115336.1| hypothetical protein BC03BB108_C0008 [Bacillus cereus 03BB108]
 gi|196020896|gb|EDX59626.1| hypothetical protein BC03BB108_C0008 [Bacillus cereus 03BB108]
          Length = 1096

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVA----------YHFNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P IV                 L ++ +  P  +         T
Sbjct: 765 KEKELQDILRTEISEGRPTIVYVCDTGSTVKERDVQPRLQKVVEQIPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    +++     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSEWLKDQVNSGVNVIICSLELVKVGLDL-LATPTLIFYQLPFSLFALNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  + + Q +  K+   + +
Sbjct: 881 --HCRIGQTKQCRTFYLGYRETFQQQMAQLIAQKNKAAEAM 919


>gi|326332145|ref|ZP_08198429.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
           Broad-1]
 gi|325950116|gb|EGD42172.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
           Broad-1]
          Length = 549

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 10/149 (6%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDP 98
           DE          KI  ++ I+      P +V   +   L  +  +      +G+T  K+ 
Sbjct: 384 DERYRIASCTHHKIDVVKEIVASHADKPTLVIGQYLEQLDEIAASLDAPVIEGKTSVKER 443

Query: 99  C-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 +  G+I LL          ++L      +     +   +E  Q + R+      
Sbjct: 444 QRLFDAFRSGEIDLLVVS-KVANFSIDLPSAEVAIQVSGAYGSRQEEAQRLGRLLRPGDG 502

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                +    Y +++++T+D    Q  + 
Sbjct: 503 ----NKTAHFYTIVSRDTVDADFAQNRQR 527


>gi|261369092|ref|ZP_05981975.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
 gi|282568780|gb|EFB74315.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
          Length = 2744

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T  K      +   GK+ +L       G G N+Q     L    + W   + +Q   
Sbjct: 2127 DANTDAKKATLFAKVRAGKVRILMGSTQKMGAGTNVQTKLIALHHLDVPWRPSDIEQREG 2186

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI     RQ     +V +Y    + + D    Q +  K      ++ +
Sbjct: 2187 RIL----RQGNENPSVQIYRYATEGSFDAYSWQLIENKQKFISQIMTS 2230


>gi|119952338|ref|YP_950158.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951468|gb|ABM10378.1| putative Helicase [Arthrobacter aurescens TC1]
          Length = 1884

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 89   PQGRTLDKDPCT------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            P+ R + +           ++   G I +L       G G N+Q     L      W   
Sbjct: 1469 PKVRFMHEANNDRAKARLFEQARTGHIAVLIGSTEKMGVGTNVQRRAVALHHVDCPWRPA 1528

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q   RI     RQ     +V VY  + +++ D  + Q +  K+   + L+  
Sbjct: 1529 DLAQRDGRIM----RQGNLNDSVRVYRYVTESSFDTYLWQTVERKAKFINQLMRG 1579


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            +K   L  +I+  N   ++V         R+ K                        + 
Sbjct: 228 SDKTSVLIDLIKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALA 287

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
           ++  GK+ ++ A       G+++      +V F L    E++   + RIG T R   +G 
Sbjct: 288 DFKAGKVQVMVA-TDIAARGIDI-DQLPFVVNFDLPNVSEDY---VHRIGRTGRAGASGQ 342


>gi|14590756|ref|NP_142826.1| putative helicase [Pyrococcus horikoshii OT3]
 gi|3257311|dbj|BAA29994.1| 902aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 902

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 30/157 (19%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-------------------- 90
           D K++ +  II         +I+   F   L  +    P                     
Sbjct: 336 DSKLEVISDIIAYHIRKGEKVIIFTEFRDTLEYILGKLPGILRERHGILLESDDIAKLHG 395

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G   ++    I++++E     L         GLNL +  ++++ +   W   + +Q + R
Sbjct: 396 GMKSEEIEREIKKFHERSD--LLVSTDVASEGLNL-HVASVVINYEAPWSPIKLEQRVGR 452

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           I    QR+      VF    +A  T D  VL  L  K
Sbjct: 453 IWRLNQRKETNAYTVF----LATET-DLDVLNNLYKK 484


>gi|38229250|ref|NP_938343.1| 88L [Yaba monkey tumor virus]
 gi|11134122|sp|Q9QB93|NTP1_YMTV5 RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|38000521|gb|AAR07444.1| 88L [Yaba monkey tumor virus]
          Length = 631

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 92  RTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           RT D     + E+N      G+   +     S G G++     +I +   + W+    +Q
Sbjct: 414 RTKDTRIKNVFEFNKESNTNGEQIKVCVFSISGGEGISFFSINDIFIL-DMTWNEASLKQ 472

Query: 147 MIERIGVTRQRQ--AGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLNALK 199
           ++ R             +R V VY++IA+      T+DE ++  ++TKS     L    K
Sbjct: 473 IVGRAIRLNSHANTPPNRRYVNVYFIIARLSSGEPTVDEDLINIIKTKSKEFFQLFKVFK 532

Query: 200 KETI 203
           + +I
Sbjct: 533 ESSI 536


>gi|325068189|ref|ZP_08126862.1| helicase domain protein [Actinomyces oris K20]
          Length = 798

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 30/149 (20%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAFPQ------- 90
           + ++   D +++AL  +++              ++V   +   L  +     Q       
Sbjct: 242 RGYQSRPDSRLEALVSMLDAVCRPDGRTWTNERVVVFTEYADTLDWIVSVLRQQGYGERL 301

Query: 91  ----GRTLDKDPCTIQ-EWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               G T   +   I+  +N       + +L A   + G G++LQ   + LV F + ++ 
Sbjct: 302 AVIRGSTSADEREDIRARFNADPAEEDMRVLVA-TDAAGEGIDLQTYCHRLVNFDVPFNP 360

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
              +Q + RI      + G +    ++YL
Sbjct: 361 SRLEQRVGRID-----RYGQRETPTIFYL 384


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
            V  +K   L++++E+     +++         R+                 R+  +   
Sbjct: 222 VVASQKFDLLQLLLERTEFKSVLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIE 281

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQ 158
            +  +  GK  +L A       GL++  G + ++ + +  + E++   + RIG T R   
Sbjct: 282 ALDGFKSGKFEVLVA-TDIAARGLDI-AGVSHVINYDVPENPEDY---VHRIGRTGRAHH 336

Query: 159 AGFKRA-VFVYYLIAQNTIDELVLQRLRTKS 188
            G     V    +    +I+  +   +  K 
Sbjct: 337 TGDAFTLVTEEDVRDARSIERYMGMAVERKK 367


>gi|325678768|ref|ZP_08158368.1| hypothetical protein CUS_4284 [Ruminococcus albus 8]
 gi|324109537|gb|EGC03753.1| hypothetical protein CUS_4284 [Ruminococcus albus 8]
          Length = 87

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L    A  G G N+Q     +    + W   + +Q   RI     RQ    + V ++  
Sbjct: 1   MLLGSTAKMGTGTNVQKKLIAVHDLDIPWRPADLEQRAGRII----RQGNENKQVQIFRY 56

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + + T D    Q L  K      ++ +
Sbjct: 57  VTKGTFDAYSYQTLENKQKFISQIMTS 83


>gi|68468369|ref|XP_721744.1| hypothetical protein CaO19.1667 [Candida albicans SC5314]
 gi|68468612|ref|XP_721625.1| hypothetical protein CaO19.9236 [Candida albicans SC5314]
 gi|46443548|gb|EAL02829.1| hypothetical protein CaO19.9236 [Candida albicans SC5314]
 gi|46443676|gb|EAL02956.1| hypothetical protein CaO19.1667 [Candida albicans SC5314]
          Length = 1250

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 47   HWKEVHDEKIKALE-VIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
            +       K+  L   ++E + N    IV + F      L +     +            
Sbjct: 1051 NILGTSSAKLTYLATSLLENQRNRIKSIVFFEFEDSAYYLIELLEILKIRHIIYANFITP 1110

Query: 96   -KDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             K    + +++   +          L  + A   HGLN+      + F +        Q+
Sbjct: 1111 IKRAQNLYDFSNYDVDKEENNGGICLVMNIAHSSHGLNI-IAATHIYFINP-----VKQE 1164

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             IE   + R  + G  + V V  L  +  +DEL +     K
Sbjct: 1165 SIEAQAIKRAHRIGQTKEVTVKTLYLKG-VDELKILSRNEK 1204


>gi|308185126|ref|YP_003929259.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061046|gb|ADO02942.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 2834

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2331 DAKTEEQKQDLFKKINRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2390

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2391 R--GVRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2443


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
           +  W E  D K +AL  ++ +     ++V      D   L++               R  
Sbjct: 348 DVRWIEDPD-KRQALLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQ 406

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    ++ +  G   +L A       GL++   G +++ + +  +++++   + RIG  
Sbjct: 407 REREEALRLFKSGACQVLVA-TDVASRGLDIPNVG-VVIQYDMPSNIDDY---VHRIG-- 459

Query: 155 RQRQAG 160
           R  +AG
Sbjct: 460 RTGRAG 465


>gi|238880607|gb|EEQ44245.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1250

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 47   HWKEVHDEKIKALE-VIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
            +       K+  L   ++E + N    IV + F      L +     +            
Sbjct: 1051 NILGTSSAKLTYLATSLLENQRNRIKSIVFFEFEDSAYYLIELLEILKIRHIIYANFITP 1110

Query: 96   -KDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             K    + +++   +          L  + A   HGLN+      + F +        Q+
Sbjct: 1111 IKRAQNLYDFSNYDVDKEENNGGICLVMNIAHSSHGLNI-IAATHIYFINP-----VKQE 1164

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             IE   + R  + G  + V V  L  +  +DEL +     K
Sbjct: 1165 SIEAQAIKRAHRIGQTKEVTVKTLYLKG-VDELKILSRNEK 1204


>gi|186475006|ref|YP_001856476.1| SNF2-like protein [Burkholderia phymatum STM815]
 gi|184191465|gb|ACC69430.1| SNF2-related protein [Burkholderia phymatum STM815]
          Length = 990

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFV 167
           L         GLNLQ+    L+FFS+ W     +Q I R+        + Q G +R + +
Sbjct: 447 LLIAADLAQVGLNLQH-ARKLIFFSIPWSPIAVEQWIGRLDRLGSAALEHQPG-ERNIDI 504

Query: 168 YYLIAQNTIDELVLQRLRT 186
           + +  +  +DE V+  L  
Sbjct: 505 FTICQRGQVDERVVSILDD 523


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
           +  W E  D K +AL  ++ +     ++V      D   L++               R  
Sbjct: 390 DVRWIEDPD-KRQALLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQ 448

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    ++ +  G   +L A       GL++   G +++ + +  +++++   + RIG  
Sbjct: 449 REREEALRLFKSGACQVLVA-TDVASRGLDIPNVG-VVIQYDMPSNIDDY---VHRIG-- 501

Query: 155 RQRQAG 160
           R  +AG
Sbjct: 502 RTGRAG 507


>gi|317011733|gb|ADU85480.1| hypothetical protein HPSA_07665 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2333 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQARLVAMHELDCPWRPDELLQMEG 2392

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2393 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2445


>gi|26334961|dbj|BAC31181.1| unnamed protein product [Mus musculus]
          Length = 482

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 49  KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
           K+    K  A++  I+   + ++   +V  H  S L    +A  + ++            
Sbjct: 316 KQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSS 375

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     Q   +    +      + G GL      + +VF  L+WD    +Q  +R    
Sbjct: 376 ERIHLVNQFQKDPDTRVAILSIQAAGQGLTFT-AASHVVFAELYWDPGHIKQAEDRAQPN 434

Query: 155 RQRQ 158
           R  Q
Sbjct: 435 RTVQ 438


>gi|119384266|ref|YP_915322.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374033|gb|ABL69626.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 923

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHF----NSDLARLQKAFPQ------------GRTLDK 96
           +  IKAL+ +I+  + A  +V   +         RL+KAF +                D+
Sbjct: 446 NALIKALKPLIK--DGANPVVFCRYLATAEHVKERLRKAFTKLNVQAVTGELTPDERRDR 503

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 E    K   +         G+NLQ   + ++ + L W+   HQQ   R+    Q
Sbjct: 504 VAEMAAEEGSTKDQRILVATDCLSEGINLQQLFDTVIHYDLSWNPTRHQQREGRVDRFGQ 563


>gi|326473702|gb|EGD97711.1| hypothetical protein TESG_05112 [Trichophyton tonsurans CBS 112818]
          Length = 314

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ +L         GLNLQ     +V FS         Q I R+     ++ G    V V
Sbjct: 163 RVMVLVCSYNVSSTGLNLQKLCRNVVIFSPPTSKASQDQAIGRV-----KRLGQTHVVHV 217

Query: 168 YYLIAQNT 175
           Y +  +++
Sbjct: 218 YEIRVRDS 225


>gi|322798229|gb|EFZ20021.1| hypothetical protein SINV_12458 [Solenopsis invicta]
          Length = 283

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 104 WNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +N+    +  L      + G G+NL    N ++ F   W+     Q I RI  
Sbjct: 232 FNKPTNTRARLFLISTRAGGLGINLT-AANRVIIFDASWNPSHDVQSIFRIYR 283


>gi|317011160|gb|ADU84907.1| hypothetical protein HPSA_04625 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2333 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQARLVAMHELDCPWRPDELLQMEG 2392

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2393 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2445


>gi|68164395|ref|YP_247529.1| hypothetical protein pTet_01 [Campylobacter jejuni subsp. jejuni
            81-176]
 gi|60617801|gb|AAX31282.1| pTet01 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N  +   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1470 NETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1519

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1520 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1579

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1580 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1620


>gi|10954739|ref|NP_066674.1| hypothetical protein pRi1724_p094 [Agrobacterium rhizogenes]
 gi|10567403|dbj|BAB16212.1| riorf93 [Agrobacterium rhizogenes]
          Length = 1693

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVI--- 62
            +L   +   + E  N  +  V+      Q    A Y   +    ++          +   
Sbjct: 1245 DLRLVMPANDNEEHNKLNLLVRNAFRIWQDTGEATYLRPDGKSYDLPGAAQMIFSDLGTI 1304

Query: 63   -IEKANAAPIIVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             +EK        AY     +L RL          + + +     +    ++    G++  
Sbjct: 1305 NVEKTRG---FSAYRWIRDELVRLGVPPSQIAFMQDYKKTEAKQRLFADVR---AGRVRF 1358

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     + G G+N Q     L    + W     +Q   RI     RQ     AV ++   
Sbjct: 1359 LIGSSETMGTGVNAQARLKALHHLDVPWLPSHIEQREGRIV----RQGNQHDAVDIFAYA 1414

Query: 172  AQNTIDELVLQRLRTKS 188
             + ++D  + Q    K+
Sbjct: 1415 TEGSLDASMWQNNERKA 1431


>gi|296242505|ref|YP_003649992.1| helicase domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095089|gb|ADG91040.1| helicase domain protein [Thermosphaera aggregans DSM 11486]
          Length = 1040

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R+    P           + +  + +   +         GLN+Q   NI+V + + W  
Sbjct: 522 QRIVYLIPDL------AEAVDDLEKSRALKVLVSTDVASEGLNIQE-FNIVVNYDVPWSP 574

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +Q I R+   RQR+        V  L+ ++TI+     +L  K
Sbjct: 575 VRREQRIGRVYRLRQRR-----DCSVVDLVRESTIEYAFYSKLVLK 615


>gi|254521296|ref|ZP_05133351.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219718887|gb|EED37412.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 771

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EK     ++    +        RL+    Q               + 
Sbjct: 591 SPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASRR 650

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 651 EDWIAEQLDRGIDVLVTNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 704

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 705 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 740


>gi|163858602|ref|YP_001632900.1| hypothetical protein Bpet4284 [Bordetella petrii DSM 12804]
 gi|163262330|emb|CAP44633.1| conserved plasmid related protein [Bordetella petrii]
          Length = 644

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EK     ++    +        RL+    Q               + 
Sbjct: 464 SPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASRR 523

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 524 EDWIAEQLDRGIDVLVTNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 578 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 613


>gi|160899595|ref|YP_001565177.1| helicase domain-containing protein [Delftia acidovorans SPH-1]
 gi|160365179|gb|ABX36792.1| helicase domain protein [Delftia acidovorans SPH-1]
          Length = 600

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EK     ++    +        RL+    Q               + 
Sbjct: 420 SPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASRR 479

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 480 EDWIAEQLDRGIDVLVTNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 533

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 534 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 569


>gi|51209527|ref|YP_063459.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121999261|ref|YP_001004014.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|39979705|gb|AAR29548.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87248838|gb|EAQ71802.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N  +   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1470 NETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1519

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1520 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1579

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1580 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1620


>gi|323507972|emb|CBQ67843.1| related to SNF2 family helicase/ATPase [Sporisorium reilianum]
          Length = 1877

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKD 97
              W       I  L+  + +      +V  H+   L  ++ A  Q        G    + 
Sbjct: 1527 GDWSGKISGLIVDLKARLSQDATHKAVVFSHWPKMLTFVRDALVQNDVTAVVFGGNEARQ 1586

Query: 98   PCTIQEWNEGKIPLLFAHP---ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++   +     +   P   ++   GL L    ++        D     Q + RI   
Sbjct: 1587 AEALRAIRDDDHVHVILVPFRASAGAAGLTLT-SCDLAYLMEPALDAALEAQAVGRI--- 1642

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               + G +R   +  +  ++TI++ V++    +S
Sbjct: 1643 --HRIGQRRETTIIRVKMKDTIEDAVMRIADERS 1674


>gi|320355158|ref|YP_004196497.1| hypothetical protein Despr_3073 [Desulfobulbus propionicus DSM
           2032]
 gi|320123660|gb|ADW19206.1| hypothetical protein Despr_3073 [Desulfobulbus propionicus DSM
           2032]
          Length = 535

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 23/158 (14%)

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------------GRTLDK 96
            K K L  I+  E+     + V          +     +                +  ++
Sbjct: 224 AKEKRLLEILTTERKQGRKVAVFLEHTGTRDLVPTLVDKLHHHGFAPLVLRGQAVKPENR 283

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +         G+   L  +P     GL+L      +VFF   + +   +Q   R      
Sbjct: 284 ESWLKDHLETGQYDCLLCNPNLVKTGLDLLDFP-TIVFFQCGYSVFTLRQASRRSW---- 338

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G    V V+YL    T+ +  L  +  K      +
Sbjct: 339 -RIGQNLPVRVFYLAYAETMQDKALSLMAQKMETSLAV 375


>gi|51209446|ref|YP_063409.1| cpp14 [Campylobacter coli]
 gi|39979654|gb|AAR29498.1| cpp14 [Campylobacter coli]
          Length = 1932

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N  +   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1470 NETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1519

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1520 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1579

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1580 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1620


>gi|38491999|gb|AAM03043.3| hypothetical protein [Helicobacter pylori]
          Length = 2879

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     +  N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2376 DAKTEEQKQDLFKRVNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2435

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2436 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2488


>gi|50285519|ref|XP_445188.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524491|emb|CAG58088.1| unnamed protein product [Candida glabrata]
          Length = 1470

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I  L  +  S G GLNL    +I +      ++ E  Q + R       + G ++  +V
Sbjct: 1346 DITCLLLNIRSLGAGLNLLNARHIFLL-DPILNVNEEIQAMSR-----NNRIGQRQETYV 1399

Query: 168  YYLIAQNTIDELVLQ 182
            +  + +NT++E +++
Sbjct: 1400 WNFMLENTVEESIMR 1414


>gi|325832284|ref|ZP_08165283.1| methyltransferase domain protein [Eggerthella sp. HGA1]
 gi|325486120|gb|EGC88574.1| methyltransferase domain protein [Eggerthella sp. HGA1]
          Length = 2013

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G + +L       G G N+Q     +      W   + QQ + RI    +RQ      
Sbjct: 1666 NAGAVRILMGSTQKMGAGTNVQRRLAAIHDLDCPWRPADLQQRLGRI----ERQGNMNAE 1721

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y  + + T D  + Q +  K      ++ +
Sbjct: 1722 VEAYRYVTEGTFDAYLYQLVEGKQRFIAQVMTS 1754


>gi|126728041|ref|ZP_01743857.1| YqhH [Sagittula stellata E-37]
 gi|126711006|gb|EBA10056.1| YqhH [Sagittula stellata E-37]
          Length = 956

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           + ++  TI ++  G   +L     +   GLNL +G   +V +S  W +    Q++ R+  
Sbjct: 395 IRRNVDTIGDFVSGSDDILLLGDWAEA-GLNLHHGCETIVLYSCPWTVRSIDQLVGRLDR 453

Query: 154 TR-------QRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R       + +    R + ++ +    + +  V+  L  
Sbjct: 454 LRPGAALAAEARKDQGR-IRIHAITWAGSPESDVVDGLER 492


>gi|317489197|ref|ZP_07947715.1| methyltransferase domain-containing protein [Eggerthella sp.
            1_3_56FAA]
 gi|316911705|gb|EFV33296.1| methyltransferase domain-containing protein [Eggerthella sp.
            1_3_56FAA]
          Length = 2013

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G + +L       G G N+Q     +      W   + QQ + RI    +RQ      
Sbjct: 1666 NAGAVRILMGSTQKMGAGTNVQRRLAAIHDLDCPWRPADLQQRLGRI----ERQGNMNAE 1721

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y  + + T D  + Q +  K      ++ +
Sbjct: 1722 VEAYRYVTEGTFDAYLYQLVEGKQRFIAQVMTS 1754


>gi|315059225|gb|ADT73553.1| cpp14 [Campylobacter jejuni subsp. jejuni S3]
          Length = 1932

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 19/161 (11%)

Query: 37   NGAVYYDEEKHWKEVHD-----EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQ 90
            N  +   EE++ K + +      K      I++K  A  I      F  D          
Sbjct: 1470 NETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHD---------- 1519

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE- 149
             +T  +      + N GK  +L       G G N+Q     L      W   + +Q    
Sbjct: 1520 AKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGR 1579

Query: 150  --RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              R G     +      V  +    + T D  + Q + +K+
Sbjct: 1580 VIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1620


>gi|32480770|gb|AAO26655.1| SNF2 histone linker PHD RING helicase isoform B [Mus musculus]
          Length = 1351

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1217 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1276

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1277 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1335

Query: 143  EHQQMIERIGVTRQRQAGFKR 163
               Q I R+      + G  +
Sbjct: 1336 HELQAIGRV-----HRIGQTK 1351


>gi|145342120|ref|XP_001416141.1| DEAD-box helicase, probable [Ostreococcus lucimarinus CCE9901]
 gi|144576366|gb|ABO94434.1| DEAD-box helicase, probable [Ostreococcus lucimarinus CCE9901]
          Length = 446

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 18/137 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVA----YHFNSDLARLQKA-------FPQGRTLDK 96
               H +K  AL  ++E      +IV     Y     L RL K        +     L +
Sbjct: 291 IVAEHTDKFDALVSLLEFFKGEKVIVFSASVYRARHILQRLNKLENLPCFEYSSDANLRR 350

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T+Q +   +  +L A  A+   GL++    + ++ F      E  +  + R G  R 
Sbjct: 351 RASTLQNFQRCQGGVLVASDAAA-RGLHI-DAVSAVISFD---APEHFETYLHRAG--RT 403

Query: 157 RQAGFKRAVFVYYLIAQ 173
            +AG           A+
Sbjct: 404 ARAGKTGKCITICSTAR 420


>gi|257451469|ref|ZP_05616768.1| hypothetical protein F3_00287 [Fusobacterium sp. 3_1_5R]
 gi|317058049|ref|ZP_07922534.1| SNF2 family domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313683725|gb|EFS20560.1| SNF2 family domain-containing protein [Fusobacterium sp. 3_1_5R]
          Length = 398

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 29/160 (18%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           Y  + +    V ++K K  E I+++      IV   F      L++ +P           
Sbjct: 256 YAQKLQSIYAVTEDKKKVFEEILKEY--PKCIVFCKFVESQEYLKEKYPN---------- 303

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                     +L         GLNLQ   N++VF+   +D    +Q   RI      + G
Sbjct: 304 ----------ILVLSYQKHSFGLNLQE-YNVIVFWDKTFDYATVEQAEARIF-----RIG 347

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALK 199
             +A     +     +D+++   +  K  + + L +  +K
Sbjct: 348 QTKACTYIRMQCDCGLDKMIAGNICKKGNMLENLKIEFMK 387


>gi|240147298|ref|ZP_04745899.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
 gi|257200514|gb|EEU98798.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
          Length = 1438

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 53   DEKIKALEVIIEKANAAPII-VAYHFNSDLA-RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            D      E I +K     +      F  D    L+KA   G+              G++ 
Sbjct: 1274 DGTFNVYEDIKKKLMEKGVPENEIAFIHDANTELRKAELFGKVR-----------SGQVR 1322

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
             L       G G N+Q     L    + W   + +Q   RI     RQ      V ++  
Sbjct: 1323 FLLGSTQKMGAGTNVQDRLIALHHLDVPWRPSDIEQQEGRIL----RQGNLNPKVKIFRY 1378

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + + T D    Q +  K      ++ +
Sbjct: 1379 VTEGTFDSYSWQLIENKQKFIGQIMTS 1405


>gi|78047942|ref|YP_364117.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|121593812|ref|YP_985708.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|78036372|emb|CAJ24063.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|120605892|gb|ABM41632.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 759

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++    +        RL+    Q               +   
Sbjct: 581 KERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLDFP-TIVFMQSGYNVYSLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V YL    +     L+ +  K  +   
Sbjct: 695 GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|317126187|ref|YP_004100299.1| helicase [Intrasporangium calvum DSM 43043]
 gi|315590275|gb|ADU49572.1| helicase domain protein [Intrasporangium calvum DSM 43043]
          Length = 1068

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 33/171 (19%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
              ++   D +++AL   ++              +++   + + L  +     Q    D+
Sbjct: 509 GSGYEHRPDSRLEALITFLDSVCRPDRKTWTNERVVIFTEYAATLEWVVDILEQRGYRDR 568

Query: 97  ------------DPCTIQEWNEG--KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                          T   +     + P+ +     S G G++LQ   + LV F + ++ 
Sbjct: 569 IATIQGSTDAETRELTRARFTADPAQEPVRVLVATDSAGEGIDLQTHCHRLVNFDIPFNP 628

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNT---IDELVLQRLRTK 187
              +Q I RI      + G K    +++   I++ T    D   ++R+  K
Sbjct: 629 SRLEQRIGRID-----RYGQKYTPEIFHFAPISKATTFDADMDFMRRIAEK 674


>gi|116662342|ref|YP_829395.1| helicase domain-containing protein [Arthrobacter sp. FB24]
 gi|116613121|gb|ABK05814.1| helicase domain protein [Arthrobacter sp. FB24]
          Length = 1575

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G N+Q     LV     W   + +Q   RI     RQ      V
Sbjct: 1178 SGQIAVLMGSTSKMGVGTNIQKRAVHLVDMDAPWRPSDVEQRHGRIL----RQGNQNSEV 1233

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  ++ + + D  + Q L  KS   + ++  
Sbjct: 1234 RISQVVTKESFDSFMWQGLERKSRFINQIMRG 1265


>gi|317181593|dbj|BAJ59377.1| hypothetical protein HPF57_0303 [Helicobacter pylori F57]
          Length = 2818

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2349 DAKTEEQKQDLFKKINRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2408

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2409 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2461


>gi|299115214|emb|CBN74047.1| Ci-SWI/SNF [Ectocarpus siliculosus]
          Length = 1074

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCT-IQEWNEG--KIPLL 112
           +   + +++       L  L+              G T  +   + + E+NE      L 
Sbjct: 566 RMQGSRVLLFCQMTRLLDILEDYMHLQGYDYCRIDGSTDGESRDSQMDEFNEPGSSKFLF 625

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ +   W+ +     + + G     +              
Sbjct: 626 LLSTRAGGLGINL-ATADVVILYDSDWNPQRELMAMVKFGADEILRMDDS---------- 674

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Q   DE + + LR      +     ++K+  H
Sbjct: 675 QGLTDESIDELLRKGEEKTEETNARIQKDMQH 706


>gi|291540174|emb|CBL13285.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2510

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2131 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2190

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2191 R----GIRQGNENEEVVIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|229891934|sp|P0C9B3|VF706_ASFK5 RecName: Full=Putative ATP-dependent RNA helicase Q706L
          Length = 706

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQLWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|3599385|gb|AAC62691.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
          Length = 503

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 26/161 (16%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------------KAFPQGRTLDKDPC 99
           KI  LE  +  A     +V   +   +  +                KA  +G    K   
Sbjct: 333 KIPKLEEAVRGAKGK-ALVFTSYRDSVDLIHSKLQAAGINSGILIGKAGEKGLKQKKQVE 391

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T+ ++ +G   +          GL++    N++VF+        + Q        R+ + 
Sbjct: 392 TVAKFRDGGYDV-LVSTRVGEEGLDISE-VNLVVFYDNVPSSIRYVQ--------RRGRT 441

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K A  +  L+A+ TIDE      R K T    + + + K
Sbjct: 442 GRKDAGKLVVLMAKGTIDEAYYWIGRRKITAARGMGDRMNK 482


>gi|254500027|ref|ZP_05112180.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222441494|gb|EEE48171.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 1702

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 72   IVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEW---NEGKIPLLFAHPASCGHGL 123
              AY +  D   +++  P           K     + +   N GK+  L     + G G+
Sbjct: 1322 FSAYRWIRD-ELIRRGVPASEIAFMQDYKKTEAKQRLFADVNAGKVRFLIGSSETMGTGV 1380

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N Q     L    + W   + +Q   RI    +RQ      + ++    + ++D  + Q 
Sbjct: 1381 NAQLRLKALHHLDVPWLPSQIEQREGRI----ERQGNQHDEIDIFAYATEGSMDAQMWQN 1436

Query: 184  LRTKS 188
               K+
Sbjct: 1437 NERKA 1441


>gi|116751263|ref|YP_847950.1| helicase domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700327|gb|ABK19515.1| helicase domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1058

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 29/146 (19%)

Query: 53  DEKIKALEVIIEKA-------NAAPIIVAYHFNSD---LARLQ--KAFPQGRTLDKDPCT 100
           D K KA+   +E         N   +I+   + +    L ++     +   R +      
Sbjct: 503 DSKAKAILDWLESHLKTDGRWNGKRVILFTEYRATHSWLHQILTANGYGGDRLMYLHGSM 562

Query: 101 IQEWNEGKIPLLFAHPA-----------SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           + +  E       AHP            +   G++LQ   N L+   + W+    +Q   
Sbjct: 563 LPDERESVKAAFQAHPDISPVRILLATDAASEGIDLQNHCNYLIHVEIPWNPNVMEQRNG 622

Query: 150 RIGVTRQRQAGFKRA-VFVYYLIAQN 174
           RI      + G K   VF+++ + + 
Sbjct: 623 RID-----RHGQKEDSVFIWHPVGKG 643


>gi|225017370|ref|ZP_03706562.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
 gi|224949780|gb|EEG30989.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
          Length = 2434

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +   +GK+ +L    +  G G+N+Q     +      W   +  Q   R     
Sbjct: 2068 QRQELFERTRQGKVRILIGSTSKLGTGVNVQNKVISIDHLDCPWKPSDITQRNGR----G 2123

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             RQ      + +   +A+ T D  + Q    K
Sbjct: 2124 VRQGNENPEIMIKQFVAKGTFDAYLWQIQEQK 2155


>gi|284173812|ref|ZP_06387781.1| type III restriction protein res subunit [Sulfolobus solfataricus
           98/2]
 gi|261602084|gb|ACX91687.1| type III restriction protein res subunit [Sulfolobus solfataricus
           98/2]
          Length = 444

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-----I 101
                   K++ L+ ++++ N   II+     S    + + F       K         +
Sbjct: 303 KIAVNSKAKVEKLKDLLKELNGEKIIIFTRNTSMAYEISRLFLIPAVTYKTGKQERVEIL 362

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++  GK  ++    +    G+++      +V           +Q I+R+G  R  +   
Sbjct: 363 EKFRSGKYNVIVTS-SVLDEGIDVPDASVAIVLGG----YGTSRQFIQRLG--RILRKKE 415

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +   +  ++ + T D  + +R R  + +
Sbjct: 416 NKKARLIEIVTKGTSDYNLSKRRRQNANL 444


>gi|229891936|sp|P0C9B2|VF706_ASFWA RecName: Full=Putative ATP-dependent RNA helicase Q706L
          Length = 706

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQLWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|148671573|gb|EDL03520.1| SNF2 histone linker PHD RING helicase, isoform CRA_b [Mus musculus]
          Length = 1580

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1446 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1505

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1506 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1564

Query: 143  EHQQMIERIGVTRQRQAGFKR 163
               Q I R+      + G  +
Sbjct: 1565 HELQAIGRV-----HRIGQTK 1580


>gi|118150666|ref|NP_766525.3| E3 ubiquitin-protein ligase SHPRH isoform b [Mus musculus]
          Length = 1616

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1482 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1541

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1542 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1600

Query: 143  EHQQMIERIGVTRQRQAGFKR 163
               Q I R+      + G  +
Sbjct: 1601 HELQAIGRV-----HRIGQTK 1616


>gi|32480768|gb|AAO26654.1| SNF2 histone linker PHD RING helicase isoform A [Mus musculus]
          Length = 1616

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
              +     +++   K  H  K++A    L  I  +   A  +V   +   L  + KA   
Sbjct: 1482 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1541

Query: 91   GRTLDKDPCTIQEWNE--------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      I+ + E          I +L     +  +GL +    ++L       +  
Sbjct: 1542 NNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVL-LVEPILNPA 1600

Query: 143  EHQQMIERIGVTRQRQAGFKR 163
               Q I R+      + G  +
Sbjct: 1601 HELQAIGRV-----HRIGQTK 1616


>gi|82059328|sp|Q89926|VF706_ASFM2 RecName: Full=Putative ATP-dependent RNA helicase Q706L
 gi|210605|gb|AAA03222.1| nucleic acid-dependent ATPase [African swine fever virus]
 gi|414093|emb|CAA51457.1| J10L 80.4KDa protein [African swine fever virus]
 gi|450721|emb|CAA50829.1| helicase [African swine fever virus]
          Length = 706

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQLWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|293602264|ref|ZP_06684712.1| toprim domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292819343|gb|EFF78376.1| toprim domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 758

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K +AL   +  E A     +V   +        RL+  F Q              +K   
Sbjct: 581 KEEALLERVRRETAKGRRTLVYTTYTGTRDTSARLKALFDQAGVRSAVLRSSVAAEKRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E  +  I  L  +P     GL++     IL F    +++   QQ   R       + 
Sbjct: 641 WVMEQVDRGIDALICNPELVKTGLDMLEFPTIL-FMQTGYNVYTLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G  R V V +L  Q T     LQ +  K  +   
Sbjct: 695 GQTRDVDVDFLGYQGTAQMRCLQLMAQKIAVSQS 728


>gi|284992138|ref|YP_003410692.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284065383|gb|ADB76321.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 973

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ + +   P+ +         G+NL    + L+ F + W L   +Q   RI   
Sbjct: 505 DQQEVVESFKQASSPIRVLVTGDVASEGVNLHAQCHELIHFDIPWSLIRIEQRNGRID-- 562

Query: 155 RQRQAGFKRAVFVYYLI-----AQNTIDELVLQRLRTKST 189
              + G K    +  L+      +   D  VL +L  K  
Sbjct: 563 ---RYGQKHQPQITTLLLDPDSGKFAGDVRVLAKLVEKED 599


>gi|307111221|gb|EFN59456.1| hypothetical protein CHLNCDRAFT_138032 [Chlorella variabilis]
          Length = 1211

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 96   KDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +    +Q +N           L   H  SCG G +L  G +  +F    W   +  Q   
Sbjct: 980  ERQQAVQRFNAAAGAGGAQRWLFLQHTRSCGVGTDL-PGIDAAIFLDSDWSARKDAQA-- 1036

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++   + G    + VY L  + T +E +LQ       + D L
Sbjct: 1037 ---LSHALRVGSPDRLRVYRLYCRRTCEERLLQLSDRMRGL-DAL 1077


>gi|229891935|sp|P0C9B1|VF706_ASFP4 RecName: Full=Putative ATP-dependent RNA helicase Q706L
          Length = 706

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQLWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|219117137|ref|XP_002179363.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409254|gb|EEC49186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 853

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 24/149 (16%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEG 107
           ++ +  II  A    +IV   F+    ++++   +          ++ +   +++ + + 
Sbjct: 708 VEKVREII--AMGDRMIVFCQFDDLKEKIRQVLLENGVPSLEVAGSVHRQIASLRVFQK- 764

Query: 108 KIP------LLFAHP---ASCGHGLNLQYGGNIL-VFFSLWWDLEEHQQMIERIGVTRQR 157
           +IP      +L        S   GLNL +  + L V   L     E+    E   + R R
Sbjct: 765 EIPGPTDPRVLVLKMDDEQSA--GLNLTHLNHALFVHPLLALSRAEYD-AYETQAIGRIR 821

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           + G  + V ++  +A+NT+D  + +    
Sbjct: 822 RFGQTKTVHLHRFLARNTMDMEIWEERTK 850


>gi|229021209|ref|ZP_04177848.1| hypothetical protein bcere0030_56290 [Bacillus cereus AH1273]
 gi|229027226|ref|ZP_04183496.1| hypothetical protein bcere0029_54620 [Bacillus cereus AH1272]
 gi|228734077|gb|EEL84801.1| hypothetical protein bcere0029_54620 [Bacillus cereus AH1272]
 gi|228740103|gb|EEL90461.1| hypothetical protein bcere0030_56290 [Bacillus cereus AH1273]
          Length = 560

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 227 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 286

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 287 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 342

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 343 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|225027237|ref|ZP_03716429.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
 gi|224955437|gb|EEG36646.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
          Length = 2685

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++  L    +  G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 2344 SGQVRFLLGSTSKMGAGTNVQDRLIALHHLDVPWRPADIEQQEGRIL----RQGNKNKKV 2399

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  I +NT D    Q +  K      ++ +
Sbjct: 2400 KIFRYITENTFDAYSWQLIENKQKFIGQIMTS 2431


>gi|209886780|ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209874976|gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 1700

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 30/201 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKI----KALEVI 62
            R    DL+  + +  N A+   K   L + A  ++ +  ++     D K+     A ++I
Sbjct: 1249 RHAAIDLRLVDPDNDNEAA--NKLNMLVSNAFRIWKETAENGYTRADGKLFDLPGAAQMI 1306

Query: 63   IEKANAAPI-----IVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEG 107
                    +       AY     +L R+          + F +     +    ++    G
Sbjct: 1307 FSDLGTISVERSRGFSAYRWVRDELIRMGVPASEIAFMQEFKKSEAKQRLFGDVR---AG 1363

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            K+  L     + G G+N Q     L    + W   + +Q   RI     RQ      V +
Sbjct: 1364 KVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDI 1419

Query: 168  YYLIAQNTIDELVLQRLRTKS 188
            +    + ++D  + Q    K+
Sbjct: 1420 FAYATEGSLDAQMWQNNERKA 1440


>gi|295696317|ref|YP_003589555.1| type III restriction protein res subunit [Bacillus tusciae DSM
           2912]
 gi|295411919|gb|ADG06411.1| type III restriction protein res subunit [Bacillus tusciae DSM
           2912]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE--- 103
                +  K++    ++ +    P++V  H+   L  L             P  ++    
Sbjct: 387 RIAATNPRKVEVAAELVARHRGTPVLVIGHYLDQLRELAHRLGAPDITGDTPERVRRETY 446

Query: 104 --WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+IP+L          ++L      +     +   +E  Q + R+   ++   G 
Sbjct: 447 DAFRRGEIPVLCLS-RVANTAVDLPDARVAVELSGNFGSRQEEAQRLGRLLRLKKDGGGA 505

Query: 162 KRAVFVYYLIAQNTID-ELVLQRLR 185
           +    +Y L+ + T + E  ++R +
Sbjct: 506 R----LYMLVTEGTEEVETAVRRQQ 526


>gi|19551967|ref|NP_599969.1| SNF2 family helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389627|ref|YP_225029.1| SNF2 family DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21323505|dbj|BAB98132.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41324962|emb|CAF19443.1| Superfamily II DNA/RNA helicase, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
          Length = 962

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 31/185 (16%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQ 90
             QL N A+     + ++ +    +  L  I ++K +   +++     + L  LQ+   +
Sbjct: 411 LSQL-NSAITPQTSQKYQSL----LSYLGDIGVKKNSDTRVVIFSERVATLHWLQENLIR 465

Query: 91  -------------GRTLDKDP-CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFF 135
                        G   D++    + E+ +   P+ +         G+NL    + LV +
Sbjct: 466 DLKMPPNSIAVMHGGLPDQEQMRLVDEFKKTDSPIRIMITGDVASEGVNLHTLCHNLVHY 525

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL-----VLQRLRTKSTI 190
            + W L   QQ   RI      + G      +   +     D       VL+RL  +   
Sbjct: 526 DIPWSLIRIQQRNGRID-----RYGQTHNPSIVTFLLDPAEDSKVGEVHVLERLMEREHE 580

Query: 191 QDLLL 195
              LL
Sbjct: 581 AHSLL 585


>gi|329955215|ref|ZP_08296172.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526214|gb|EGF53233.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 448

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 13/157 (8%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIEKANAAP 70
           +  + GE      S+S+ +K   L+  AV      +       +K++ L  ++       
Sbjct: 181 FAGVGGEASGNAASSSRVIKLNFLSEEAVSERLNLQKVISPEKDKLETLYRLLCTLGDHS 240

Query: 71  IIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +V  ++   + R+            AF  G   D     + ++  G  P+         
Sbjct: 241 TLVFVNYRESVERVVSYLKSKKFPCDAFHGGMEQDDRERALYKFRNGSCPV-LVSTDLAA 299

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            GL++  G + +V + +  + E       R      R
Sbjct: 300 RGLDI-PGIDNVVHYHIPVNEEAFTHRNGRTARWEAR 335


>gi|120554239|ref|YP_958590.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324088|gb|ABM18403.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 982

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 98  PCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +  G  P+ L         G+NL +  + ++ + L W +    Q   RI     
Sbjct: 489 AAAVEAFGTGNSPVRLMLATDVASEGVNLHHQCHNIIHYDLPWSIITLIQRNGRID---- 544

Query: 157 RQAGFKRAVFVYYLIAQ 173
            + G K    + YL+ +
Sbjct: 545 -RFGQKYPPIIRYLMVE 560


>gi|94311266|ref|YP_584476.1| helicase-like protein [Cupriavidus metallidurans CH34]
 gi|218891399|ref|YP_002440266.1| hypothetical protein PLES_26731 [Pseudomonas aeruginosa LESB58]
 gi|254241417|ref|ZP_04934739.1| conserved hypothetical plasmid protein [Pseudomonas aeruginosa
           2192]
 gi|24461594|gb|AAN62165.1|AF440523_72 conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
 gi|93355118|gb|ABF09207.1| Putative plasmid-related DNA/RNA helicase [Cupriavidus
           metallidurans CH34]
 gi|126194795|gb|EAZ58858.1| conserved hypothetical plasmid protein [Pseudomonas aeruginosa
           2192]
 gi|218771625|emb|CAW27398.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 759

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|301623129|ref|XP_002940874.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Xenopus
            (Silurana) tropicalis]
          Length = 1954

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L   G+ ++ FS                 +R  + G    V +Y  + + +++E + Q  
Sbjct: 1091 LNEQGHRVLIFS--------------QAFSRAHRIGQANKVMIYRFVTRASVEERITQVA 1136

Query: 185  RTKSTI 190
            + K  +
Sbjct: 1137 KRKMML 1142


>gi|289434592|ref|YP_003464464.1| SNF2 family domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170836|emb|CBH27378.1| SNF2 family domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 399

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 45/204 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y++ + +              +A+ T+K   L    V     +H   +  EK    E
Sbjct: 230 LKKYYELKEDYLKK----------AAAYTIKINFLEMSQVM----QHCYCLASEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      L KAFP  +                        A   
Sbjct: 276 SLI-AGKEDSTIIFCKYKRSEEALLKAFPNVK--------------------VTTFAKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ   N +++F   +D  +  Q   RI      + G  +  + + L     +D ++
Sbjct: 315 YGLNLQ-AYNQIIYFDKTFDYSQRDQSERRI-----YRTGQNQDCYYHDLSGNVGLDHII 368

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
              +  K+     LLN +KKE   
Sbjct: 369 DTNISKKTN----LLNEIKKELAQ 388


>gi|89885953|ref|YP_516151.1| SNF2-related [Rhodoferax ferrireducens T118]
 gi|89347951|gb|ABD72153.1| SNF2-related [Rhodoferax ferrireducens T118]
          Length = 582

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +   T + +  G   ++       G GL+ LQ    + VF  L W    H+Q   R   
Sbjct: 441 KQKAATKEAFVNGDCRVMIISLR-AGAGLDGLQRVCKVGVFGELDWSPGVHEQCGGRYW- 498

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G       Y+L++++  D ++   L  K    D + +
Sbjct: 499 ----RDGQDEPSLAYFLLSEDGSDPVIADILGLKKGQIDGVRD 537


>gi|291524354|emb|CBK89941.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2929

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q   
Sbjct: 2549 EANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQRKG 2608

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2609 RI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2652


>gi|225430782|ref|XP_002267239.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 719

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +   Q ++R       + G  + V VY L    +I+  +L+R  +K  ++ +++
Sbjct: 572 NPQMDLQAMDRC-----HRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVI 622


>gi|262118169|ref|YP_003275939.1| helicase domain protein [Gordonia bronchialis DSM 43247]
 gi|262088079|gb|ACY24046.1| helicase domain protein [Gordonia bronchialis DSM 43247]
          Length = 1956

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + R+  +     ++   GKI +L     + G G+N+Q     L    + W   + +Q   
Sbjct: 1439 EARSPQQKLALQEDARTGKIAVLIGSTKTMGTGMNVQDRMIALHHMDVPWRPADLEQREG 1498

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            RI     RQ      + +   + + T D ++ Q++  K+
Sbjct: 1499 RII----RQGNQNPRIEICGYVTEGTTDTVMWQKVERKA 1533


>gi|222108974|ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
 gi|221727896|gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
          Length = 1693

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 34/193 (17%)

Query: 20   IEAFNSASKTVKCLQLAN----------GAVYYDEEKHWKEVHDEKIKALEVI----IEK 65
            ++A N      K   L +          G+ Y   +    E+          +    +EK
Sbjct: 1254 VDADNDNEADNKLNNLISNAFNIWKATEGSTYLRHDGKSFELPGAAQMIFSDLGTISVEK 1313

Query: 66   ANAAPIIVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                    AY     +L RL          + F +     +    ++    GK+  L   
Sbjct: 1314 TRG---FSAYRWIRDELIRLGVPASEIAFMQDFKKSEAKQRLFGDVR---AGKVRFLIGS 1367

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G G+N Q     L    + W   + +Q   RI     RQ      V ++    + +
Sbjct: 1368 SETMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYATEGS 1423

Query: 176  IDELVLQRLRTKS 188
            +D  + Q    K+
Sbjct: 1424 LDATMWQNNERKA 1436


>gi|225155242|ref|ZP_03723736.1| helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224803997|gb|EEG22226.1| helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 1642

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 94   LDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILV---FFSLWWDLEEHQQM 147
             D D   +  + +   GK+ +L       G G N+Q   ++LV        W   + +Q 
Sbjct: 1260 YDTDAEKVSLFKDVRAGKVRVLLGSTQKMGAGTNVQ---SLLVAEHHLDAPWRPADIEQR 1316

Query: 148  IERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      + G    V  ++  + + + D  + Q L TK+     ++  
Sbjct: 1317 EGRIL-----RQGNTNPVVKIFRYVTEGSFDAYMWQTLETKAKFISQVMQG 1362


>gi|86753176|gb|ABD14718.1| pXO1-8-like hypothetical protein [Bacillus cereus]
          Length = 995

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|229164867|ref|ZP_04292685.1| hypothetical protein bcere0009_55430 [Bacillus cereus R309803]
 gi|228618588|gb|EEK75596.1| hypothetical protein bcere0009_55430 [Bacillus cereus R309803]
          Length = 1108

 Score = 44.9 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 775 KEKKLQEILCTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 834

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 835 PPKRSEWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 890

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 891 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 929


>gi|225376799|ref|ZP_03754020.1| hypothetical protein ROSEINA2194_02441 [Roseburia inulinivorans DSM
           16841]
 gi|225211425|gb|EEG93779.1| hypothetical protein ROSEINA2194_02441 [Roseburia inulinivorans DSM
           16841]
          Length = 1077

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q   
Sbjct: 697 EANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQRKG 756

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 757 RI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 800


>gi|92109757|ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
 gi|91802839|gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
          Length = 1700

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 18/176 (10%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAY-HFN 78
            N  S  ++  Q   G  Y   +    E+          +    +EK+       AY    
Sbjct: 1271 NLISNAIRIWQETAGNAYIRSDGKPFELPGAAQMIFSDLGTISVEKSRG---FSAYRWIR 1327

Query: 79   SDLARL------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
             +L R+             R  +       +   GK+  L     + G G+N Q     L
Sbjct: 1328 DELVRMGVPASEIAFMQDYRKSEAKQRLFGDVRAGKVRFLIGSSDTMGTGVNAQLRLKAL 1387

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                + W   + +Q   RI     RQ      V ++    + ++D  + Q    K+
Sbjct: 1388 HHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYATEGSLDATMWQNNERKA 1439


>gi|9628228|ref|NP_042814.1| helicase [African swine fever virus]
 gi|82059190|sp|Q89581|VF706_ASFB7 RecName: Full=Putative ATP-dependent RNA helicase Q706L
 gi|407359|emb|CAA49573.1| NTPase [African swine fever virus]
 gi|780490|gb|AAA65350.1| helicase [African swine fever virus]
 gi|162849330|emb|CAN10221.1| Helicase [African swine fever virus Benin 97/1]
 gi|162849503|emb|CAN10470.1| Helicase [African swine fever virus OURT 88/3]
 gi|291289564|emb|CBH29221.1| BA71V-Q706L (j10L) [African swine fever virus E75]
 gi|1097513|prf||2113434EE helicase
          Length = 706

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQVWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|66358816|ref|XP_626586.1| DEXDc+HELICc'DEXDc+HELICc' [Cryptosporidium parvum Iowa II]
 gi|46227709|gb|EAK88629.1| DEXDc+HELICc'DEXDc+HELICc' [Cryptosporidium parvum Iowa II]
          Length = 1476

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             S+L R    F +      D   IQE N  K P+L        HGL+L    NI +    
Sbjct: 1273 KSELQRSISNFKK-----DDSNNIQEINN-KFPVLLLSIDIGSHGLDLSCVSNIYIL-DP 1325

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFV-YYLIAQNTIDELVLQRLRTKS 188
              D     Q I R    R         V V Y LI Q+T ++++   ++ K 
Sbjct: 1326 ISDESIENQTISRAYRIRSNNITSSSFVKVKYCLI-QDTFEDILYDYIQYKR 1376


>gi|303398806|emb|CBW46787.1| Q706L [African swine fever virus Georgia 2007/1]
          Length = 706

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 88  FPQGRTLDKDPCTIQE-WNE-----GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              G+ L K+   IQ+ WN      G+ I +L     +   GL+L+YG  + +    +WD
Sbjct: 466 LITGKILSKERDMIQQLWNSPLNIHGEVIKILLVS-KTGAEGLDLKYGRQVHIL-EPYWD 523

Query: 141 LEEHQQMIERIGVTRQRQA--GFKRAV--FVYYLIA--------------QNTIDELVLQ 182
                Q+  RI       A    ++ V  F+Y  +A              Q TIDE   +
Sbjct: 524 KAREDQVKARIIRIGSHDALPPEEKTVQPFLYIAVANQKMFYSIPEGSQEQKTIDERFHE 583

Query: 183 RLRTKSTIQDLLLNALKKETI 203
           R   KS +     + LK+  I
Sbjct: 584 RGLEKSHLNSAFRDLLKRAAI 604


>gi|291544389|emb|CBL17498.1| SNF2 family N-terminal domain [Ruminococcus sp. 18P13]
          Length = 790

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 4/112 (3%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           K   +  T  K     ++   G + +L       G G N+Q            W   + +
Sbjct: 423 KFIHEADTEAKKLELFKKVRRGDVRILMGSTQKMGAGTNVQNKLAASSDLDCPWRPSDLE 482

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   R+G +  RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 483 Q---RLGRSI-RQGNENAEVHIYRFVTEETFDAYLYQLVEGKQKFASQIMTS 530


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SDLARL 84
           +  GA    E+   +    EK  +L+ +IE+ +   I+V               S+   L
Sbjct: 398 IVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLL 457

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             +    R   +    +Q +  GK  +L A  A    GL+++   +I+V + L   ++E+
Sbjct: 458 TSSIHGDRMQREREEALQNFKSGKHCILVA-TAVAARGLDIKN-VDIVVNYDLPKSIDEY 515

Query: 145 QQMIERIGVTRQRQAGFK-RAVFVY 168
              + RIG  R  + G + +AV  Y
Sbjct: 516 ---VHRIG--RTGRVGNRGKAVSFY 535


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SDLARL 84
           +  GA    E+   +    EK  +L+ +IE+ +   I+V               S+   L
Sbjct: 265 IVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLL 324

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             +    R   +    +Q +  GK  +L A  A    GL+++   +I+V + L   ++E+
Sbjct: 325 TSSIHGDRMQREREEALQNFKSGKHCILVA-TAVAARGLDIKN-VDIVVNYDLPKSIDEY 382

Query: 145 QQMIERIGVTRQRQAGFK-RAVFVY 168
              + RIG  R  + G + +AV  Y
Sbjct: 383 ---VHRIG--RTGRVGNRGKAVSFY 402


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SDLARL 84
           +  GA    E+   +    EK  +L+ +IE+ +   I+V               S+   L
Sbjct: 398 IVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLL 457

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             +    R   +    +Q +  GK  +L A  A    GL+++   +I+V + L   ++E+
Sbjct: 458 TSSIHGDRMQREREEALQNFKSGKHCILVA-TAVAARGLDIKN-VDIVVNYDLPKSIDEY 515

Query: 145 QQMIERIGVTRQRQAGFK-RAVFVY 168
              + RIG  R  + G + +AV  Y
Sbjct: 516 ---VHRIG--RTGRVGNRGKAVSFY 535


>gi|115531782|ref|YP_784308.1| NPH-1 [Crocodilepox virus]
 gi|115521135|gb|ABJ09009.1| NPH-1 [Crocodilepox virus]
          Length = 626

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 15/147 (10%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHG 122
              +++ Y F   L  +       RT +     + E+N      G++       AS   G
Sbjct: 389 GISVLLEY-FR--LFEISHVEFSSRTRETRTQLVAEFNAPENTNGELIKACVFSASGNEG 445

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ----NTI 176
           ++     +IL+   + W+    +Q+I R             +R + V++++A      ++
Sbjct: 446 ISFMSINDILIL-DMTWNESSLKQIIGRALRLNSHVNNVSDRRYLNVHFIVATLADGLSV 504

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETI 203
           D+ +L  ++ KS   + L + LK+ +I
Sbjct: 505 DQELLDIIQQKSREFNQLYSVLKRASI 531


>gi|19387219|gb|AAL87140.1|AF479821_1 DEAD box RNA helicase Vasa [Hyphessobrycon ecuadoriensis]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E++  +     K + L  +++       +V          +     Q     
Sbjct: 180 VGGACSDVEQQIIQVDQYSKREQLLELLKTTGTERTMVFVETKRSADFIATFLCQEKVPT 239

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL++++  + +V F L  ++EE+ 
Sbjct: 240 TSIHGDREQREREKALSDFRTGQCPVLVA-TSVAARGLDIEHVQH-VVNFDLPNNIEEYV 297

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 298 HRIGRTGRCG 307


>gi|266625261|ref|ZP_06118196.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
 gi|288862841|gb|EFC95139.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
          Length = 634

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIK-----ALEVIIEKANAAPIIVAYHFNSDLA 82
           K  K  QL    +   + K       + +      ALE  +      P    Y    D+ 
Sbjct: 458 KADKLTQLVFCDISTPQAKAPASKAAKTLDNPLLHALEDAVPLPEQEPTFTVY---DDIR 514

Query: 83  R--LQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +  + +  P        +  T  +      +   G++ +L    A  G G N+Q     L
Sbjct: 515 QKLIAQGMPADQIAFIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVAL 574

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                 W   +  Q   RI    +RQ      V VY  + + T D  + Q +  K  
Sbjct: 575 HDLDCPWRPGDLAQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQK 627


>gi|190015603|ref|YP_001967159.1| hypothetical protein BcAH187_pCER270_0012 [Bacillus cereus]
 gi|217956928|ref|YP_002336024.1| hypothetical protein BCAH187_C0012 [Bacillus cereus AH187]
 gi|116584510|gb|ABK00627.1| conserved hypothetical protein [Bacillus cereus]
 gi|217068442|gb|ACJ82690.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 1098

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|27375975|ref|NP_767504.1| hypothetical protein blr0864 [Bradyrhizobium japonicum USDA 110]
 gi|27349114|dbj|BAC46129.1| blr0864 [Bradyrhizobium japonicum USDA 110]
          Length = 1073

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 37/183 (20%)

Query: 10  ELYCDLQGENIEAFNSASKTVKC--------LQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           E    +  +   A  +AS+             +LA         +      D +++ L  
Sbjct: 446 EAEATMDQDEASATEAASRAGALGATKSALEAELAAVDDMLAIAEASASRPDARVRWLVE 505

Query: 62  IIEKA-------NAAPIIVAYHFNSDLARLQKAFPQG---------RTL--------DKD 97
            ++         N   +I+   +      L++   +          R L        DK 
Sbjct: 506 WVKANMLAGKTWNNRRLIIFTEYEDTRRWLERRLLEAIDATDRSDERILVFSGATGTDKR 565

Query: 98  PCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + +N       + +L     +   G+NLQ   + L+ F L W+    +Q   RI  
Sbjct: 566 EAVKRAFNTDPAIEPVRILLC-TDAAREGINLQTYCSDLIHFDLPWNPSRLEQRNGRIDR 624

Query: 154 TRQ 156
             Q
Sbjct: 625 KLQ 627


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           +  V   E+  +     EK K L  I+ KA    ++V      +  R+ +   +      
Sbjct: 211 SSTVDTIEQTVYFVEKKEKSKLLISILHKAEGQSVLVFSRTKHNADRIVRVLSKAGIGSQ 270

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                ++ +     ++ +  GKI ++ A   A+ G  +N      +++ + L    E + 
Sbjct: 271 AIHGNKSQNARQSALENFKTGKIRVMIATDIAARGIDINELP---LVINYDLPDVPETY- 326

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + RIG  R  +AG       +    +  +   + +    K
Sbjct: 327 --VHRIG--RTGRAGNSGTALTFCSQEERKLVSDIQKLTGKK 364


>gi|208702017|ref|YP_002267502.1| hypothetical protein BCH308197_A0251 [Bacillus cereus H3081.97]
 gi|208657872|gb|ACI30242.1| conserved hypothetical protein [Bacillus cereus H3081.97]
          Length = 560

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 227 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 286

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 287 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 342

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 343 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|190015064|ref|YP_001966555.1| conserved hypothetical protein [Bacillus cereus]
 gi|190015330|ref|YP_001966881.1| hypothetical protein pPER272_0010 [Bacillus cereus]
 gi|218848219|ref|YP_002454899.1| hypothetical protein BCAH820_B0012 [Bacillus cereus AH820]
 gi|116584740|gb|ABK00855.1| conserved hypothetical protein [Bacillus cereus]
 gi|116585011|gb|ABK01120.1| conserved hypothetical protein [Bacillus cereus]
 gi|218540270|gb|ACK92666.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 562

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 227 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 286

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 287 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 342

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 343 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|323487866|ref|ZP_08093124.1| SNF2 family DNA/RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323398600|gb|EGA91388.1| SNF2 family DNA/RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 851

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 84  LQKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           ++ A   G T  ++   I   +   +I +L  +P +    ++L    +  ++    ++L 
Sbjct: 714 IKAAVIYGSTPQEERDAIIGMFKNNEIEVLITNPHTLAESVSLHKTCHDAIYLEYSFNLT 773

Query: 143 EHQQMIERIGVTRQRQAGF--KRAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLL 194
              Q  +RI      + G    +    YY + +       TIDE +  RL+ K    + +
Sbjct: 774 HMLQSRDRI-----HRLGLPSNQYTQYYYFMLEGQEEKRNTIDEKIYIRLKEKE---ERM 825

Query: 195 LNALKKETI 203
           L A++ + +
Sbjct: 826 LEAIEGDVL 834


>gi|315185877|gb|EFU19642.1| type III restriction protein res subunit [Spirochaeta thermophila
           DSM 6578]
          Length = 563

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
           ++E+    P ++   + + L R+ +        GRT +++   + +E+ EG+I  L    
Sbjct: 421 LLERHADLPTLIIGQYLNQLERIARTLGLPLITGRTPNRERERLYREFKEGRITRLVVS- 479

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                 ++L      +     +   +E  Q + RI   +   A      + Y ++ ++T+
Sbjct: 480 RVANFSIDLPDAAVAIQVSGTFGSRQEEAQRLGRILRPKHHHA------YFYTIVTRDTL 533

Query: 177 DEL 179
           +E 
Sbjct: 534 EEH 536


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 17/138 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--- 91
           +  GA    E+  ++    +K K LE ++ + NA   +V          L     +    
Sbjct: 332 IVGGACGDVEQVVYEVEKFKKRKKLEELLGEGNARGTLVFVETKRSADYLASLMSETKFP 391

Query: 92  -------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    ++++ EG++ +L A  +    GL+++   + +V + L  +++++
Sbjct: 392 TTSIHGDRLQREREMALKDFKEGRMDVLIA-TSVAARGLDIKNVSH-VVNYDLPKNIDDY 449

Query: 145 QQMIERIGVTRQRQAGFK 162
              + RIG  R  + G K
Sbjct: 450 ---VHRIG--RTGRVGNK 462


>gi|107099832|ref|ZP_01363750.1| hypothetical protein PaerPA_01000852 [Pseudomonas aeruginosa PACS2]
 gi|37955709|gb|AAP22548.1| putative helicase [Pseudomonas aeruginosa]
          Length = 751

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 573 KEQALVDLCLEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTSRRED 632

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 633 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 686

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 687 GQKHPVRV 694


>gi|288561612|ref|YP_003429018.1| SNF2/RAD54 family helicase [Bacillus pseudofirmus OF4]
 gi|288548244|gb|ADC52126.1| SNF2/RAD54 family helicase [Bacillus pseudofirmus OF4]
          Length = 466

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 62  IIEKANAAPIIVAYHFNS----DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA--H 115
           +I  A+    +V   F S    D   +      G   ++    ++ + +   PL      
Sbjct: 287 LIFTAHKKTAVVLAEFLSSKYPDKEAVC--IHGGVKKEERFQYMERFQDPTDPLSIIVFT 344

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +      L     + + F + ++ ++ QQ       +R  + G    V VY+LI  +T
Sbjct: 345 VRTGAESYTLTEAKGVFI-FDMDFNGKKLQQC-----FSRAVRLGQTDVVDVYWLITLDT 398

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           I+  +   + +K +  D+ ++
Sbjct: 399 IEVNIHGVILSKDSGVDIAVD 419


>gi|145604058|ref|XP_360412.2| hypothetical protein MGG_11047 [Magnaporthe oryzae 70-15]
 gi|145012150|gb|EDJ96806.1| hypothetical protein MGG_11047 [Magnaporthe oryzae 70-15]
          Length = 873

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 26/150 (17%)

Query: 54  EKIKAL-EVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTI 101
            KI AL + + + +     +V   +   L  +  A                   +    +
Sbjct: 697 SKITALVKDVRDHSLTDKCVVFSFWKKSLDIVGSALEASGVKYLRVDGSASPKKRSNILL 756

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                    +L    ++   G+      +IL      W+    +Q I R+      +   
Sbjct: 757 NFQTRQACTVLLITFSTGAVGV------HIL---EPQWNPAAEKQAIGRLL-----RLDQ 802

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            R V +     + +I++ V +R   K  + 
Sbjct: 803 SRKVTIVRYAMEKSIEQAVQKRQLRKFQLA 832


>gi|86605043|ref|YP_473806.1| helicase [Synechococcus sp. JA-3-3Ab]
 gi|86553585|gb|ABC98543.1| putative helicase [Synechococcus sp. JA-3-3Ab]
          Length = 964

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P +         G+NLQ     ++ + L W+    +Q   R+    QR       V V
Sbjct: 535 DQPRVLVATDCLSEGINLQEKLTAVIHYDLPWNPNRLEQREGRVDRYGQRAP----RVKV 590

Query: 168 YYLIAQ-NTIDELVLQRLRTK 187
                + N +D +VL+ L  K
Sbjct: 591 IRFFGRDNPVDGVVLKVLLNK 611


>gi|146304506|ref|YP_001191822.1| DNA repair helicase RAD25 [Metallosphaera sedula DSM 5348]
 gi|145702756|gb|ABP95898.1| DNA repair helicase RAD25 [Metallosphaera sedula DSM 5348]
          Length = 531

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           E+    +  +++A  +     +   L               +   K+  +  I+EK    
Sbjct: 355 EIVKRAKEGDVKAMEALKVYSRIRYL-------------IGLTKGKLSKIREIVEKEKGR 401

Query: 70  PIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLN 124
            +++   +      + K        G+   ++   + +++ +    +L         GL+
Sbjct: 402 KVVIFTQYVEHAELISKLIGGYILTGQMPKRERELVLEKFKQSNSGVLVL-TTVGDEGLD 460

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +      +V           +Q I+R+G   +  +G  +   +Y LIA+ T +E   Q  
Sbjct: 461 IPDASVGIVVAG----TSSKRQYIQRLGRLLRNNSG-NKVATLYELIAKGTSEE--YQSK 513

Query: 185 RTKSTIQDLLLNALKKE 201
           + +ST  + L  +L+ +
Sbjct: 514 KRRSTSLEDLFYSLEDK 530


>gi|219883306|ref|YP_002478467.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
 gi|219862151|gb|ACL42491.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
          Length = 1606

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G N+Q     LV     W   + +Q   RI     RQ      V
Sbjct: 1208 SGQIAVLMGSTSKMGVGTNIQKRAVHLVDMDAPWRPSDVEQRHGRIL----RQGNQNPEV 1263

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  ++ + + D  + Q L  KS   + ++  
Sbjct: 1264 RISQVVTKESFDSFMWQGLERKSRFINQIMRG 1295


>gi|194899976|ref|XP_001979533.1| GG15975 [Drosophila erecta]
 gi|190651236|gb|EDV48491.1| GG15975 [Drosophila erecta]
          Length = 1255

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 1146 PDKETLITDAGKLFVLDTLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1205

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              +      + ++     I +      + G G+NL     +  ++
Sbjct: 1206 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVSSYY 1250


>gi|313665481|ref|YP_004047352.1| hypothetical protein MSB_A0613 [Mycoplasma leachii PG50]
 gi|312950048|gb|ADR24644.1| conserved hypothetical protein [Mycoplasma leachii PG50]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPI 71
                +   A + AS  ++  Q++ G       K +      ++  LE + I+K++    
Sbjct: 306 LSYPDDKWIASDDASLWLRTRQISIGF--QGNSKDYYWFDYSRLNKLEQLLIDKSD--NY 361

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--------------------- 110
           I+ Y+++ +   + K   +          I  WN  K                       
Sbjct: 362 IIFYNYDPEFDEIYKICKKLDYK------IDIWNGNKKDIINYLEYLNLDKKNKTNNKKR 415

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++ A+  S   G N Q     ++F      L  +   +    + R  + G K  +  Y  
Sbjct: 416 VIIANYFSGSTGNNWQEYDKTILF-----SLTTYGYHV--QALKRNHRIGAKNTITYYIF 468

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           +  N +++ +L  ++ +      + 
Sbjct: 469 LQDNYLEQSMLDSIKKRQNYNKEIF 493


>gi|229142277|ref|ZP_04270799.1| hypothetical protein bcere0013_53620 [Bacillus cereus BDRD-ST26]
 gi|228641215|gb|EEK97524.1| hypothetical protein bcere0013_53620 [Bacillus cereus BDRD-ST26]
          Length = 1086

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|225430368|ref|XP_002282890.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 502

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL------QKAFPQGRTLDKDPCT-IQ 102
              K++ L+ ++ K       +++   F   L  L      +     G+    +    I 
Sbjct: 407 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKYERIDGKVGGAERQVRID 466

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            +N              + G G+NL     ++++
Sbjct: 467 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 500


>gi|312139080|ref|YP_004006416.1| helicase and type iii restriction enzyme [Rhodococcus equi 103S]
 gi|311888419|emb|CBH47731.1| putative helicase and type III restriction enzyme [Rhodococcus equi
           103S]
          Length = 959

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G+NL    + L+ + + W L   +Q   R+      + G K    +  LI + +  E
Sbjct: 513 ASEGVNLHAQCHHLIHYDIPWSLIRIEQRNGRVD-----RYGQKHPPVISSLILEPSDPE 567

Query: 179 -----LVLQRLRTKST 189
                 VL RL  +  
Sbjct: 568 FSGDLRVLSRLLEREN 583


>gi|228969844|ref|ZP_04130581.1| hypothetical protein bthur0004_64810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228789869|gb|EEM37714.1| hypothetical protein bthur0004_64810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1096

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|297567971|ref|YP_003686941.1| helicase domain protein [Meiothermus silvanus DSM 9946]
 gi|296852420|gb|ADH65433.1| helicase domain protein [Meiothermus silvanus DSM 9946]
          Length = 1125

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 29/172 (16%)

Query: 5   HKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +F+ R+L+      ++            LQLA      D ++  K +   +   L   +
Sbjct: 681 EEFRQRDLFLRHIENDLALLTQVYAQAARLQLA------DPQRDPKALALARF--LRQSL 732

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKD--PCTIQEWNE------- 106
           E+     ++V   F   +  L++            GR L        + +++        
Sbjct: 733 EEEPGRKVVVFSEFVDTVEHLEQHLKGVGLRVLAVGRHLSGALMEQVVLDFDASLAEGLR 792

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  +L         G+NL   G  +V + + W+     Q + RI    QR
Sbjct: 793 RDRYDVLVTSDKLS-EGVNLHRAGA-VVNYDIPWNPTRVIQRVGRINRIGQR 842


>gi|219850174|ref|YP_002464607.1| helicase domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219544433|gb|ACL26171.1| helicase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 1153

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 33/164 (20%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
             W    D K++ L  ++   +A   ++V   F      LQ+     R    D   +   
Sbjct: 716 GEWNPNRDTKLEELTKLLTTQHARDKVLVFTQFADTAQYLQREL--TRQNITDLAIVT-- 771

Query: 105 NEGKIPLLFA---HPASCG-------------------HGLNLQYGGNILVFFSLWWDLE 142
           N+   P+  A    P S G                    G NLQ   +I+V + L W + 
Sbjct: 772 NQTDDPVTLARRFSPRSNGGLPPGEQELRILIATDVLAEGQNLQD-AHIIVNYDLPWAII 830

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q   R+    Q        + VY  +    + E +++  + 
Sbjct: 831 RLIQRAGRVDRIGQ----QHDTILVYSFLPAEGV-ERIIRLRQR 869


>gi|307718024|ref|YP_003873556.1| DNA-helicase [Spirochaeta thermophila DSM 6192]
 gi|306531749|gb|ADN01283.1| putative DNA-helicase [Spirochaeta thermophila DSM 6192]
          Length = 588

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 12/123 (9%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
           ++E+    P ++   +   L R+ +        GRT +++   + +E+ EG+I  L    
Sbjct: 446 LLERHPDLPTLIIGQYLDQLERIARTLGLPLITGRTPNRERERLYREFKEGRITRLVVS- 504

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                 ++L      +     +   +E  Q + RI   +   A      + Y ++ ++T+
Sbjct: 505 RVANFSIDLPDAAVAIQVSGTFGSRQEEAQRLGRILRPKHHHA------YFYTIVTRDTL 558

Query: 177 DEL 179
           +E 
Sbjct: 559 EEH 561


>gi|229847516|ref|ZP_04467611.1| ATP-dependent helicase HepA [Haemophilus influenzae 7P49H1]
 gi|229809579|gb|EEP45307.1| ATP-dependent helicase HepA [Haemophilus influenzae 7P49H1]
          Length = 923

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFATN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 18/136 (13%)

Query: 38  GAVYYDEEKHWKEVH-DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
           G    D  +   +V   +K + LE +++ + +   +V      D   L     Q      
Sbjct: 672 GGTCTDVTQSVIQVSGTKKRETLENLLQTSGSDRTLVFVEKKRDADFLANFLSQKNFPAT 731

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT ++    ++++  G  P+L A  A    GL++    + ++ + L  D  E+  
Sbjct: 732 SLNADRTQEERESALKDFRNGIAPILVA-TAVAARGLDINDVKH-VINYDLPKDANEY-- 787

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  + G K
Sbjct: 788 -VHRIG--RTGRIGNK 800


>gi|229113041|ref|ZP_04242541.1| hypothetical protein bcere0018_52550 [Bacillus cereus Rock1-15]
 gi|228670434|gb|EEL25777.1| hypothetical protein bcere0018_52550 [Bacillus cereus Rock1-15]
          Length = 1098

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|237809165|ref|YP_002893605.1| helicase domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237501426|gb|ACQ94019.1| helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 761

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 48/148 (32%), Gaps = 21/148 (14%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 583 KERELIDICREEKAAGRKTLVYSVYTGTRDTTSRLKMLLEQEGFRVAVLRASVDASRRED 642

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    W++   QQ   R       + 
Sbjct: 643 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGWNIYTLQQAARRSW-----RI 696

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G K+ V V YL    T     L  +  K
Sbjct: 697 GQKQHVKVIYLGYAATSQMTCLALMAKK 724


>gi|295394515|ref|ZP_06804738.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972694|gb|EFG48546.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 542

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI-----QEWNEG 107
           + K++A + I+++   A ++V   +   L  L +A        K P +      +++  G
Sbjct: 392 EAKVRATKHIVKEHPDAQLLVIGQYLDQLEELGEALNAPVLTGKTPESERERLYEDFRNG 451

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ +L          ++L      +     +   +E  Q + RI   ++           
Sbjct: 452 EVRVLVVS-KVANFSVDLPQASVAIQVSGSFGSRQEEAQRLGRILRPKENAL----PATF 506

Query: 168 YYLIAQNTIDELVLQRLRT 186
           Y ++  NT+DE   Q  R 
Sbjct: 507 YTIVTANTVDEDFAQHRRR 525


>gi|229845571|ref|ZP_04465698.1| ATP-dependent helicase HepA [Haemophilus influenzae 6P18H1]
 gi|229811506|gb|EEP47208.1| ATP-dependent helicase HepA [Haemophilus influenzae 6P18H1]
          Length = 923

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRAAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFATN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|291526662|emb|CBK92248.1| DNA methylase [Eubacterium rectale M104/1]
          Length = 2550

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2171 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2230

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2231 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLIENKQRFISQVMTS 2274


>gi|145610480|ref|XP_364171.2| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145017755|gb|EDK02118.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 982

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 40/198 (20%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEV--------IIEKANAAPIIVAYHFNSDLARLQKA 87
           AN A     +K    + D+K +  +         II       +++  H         KA
Sbjct: 776 ANSAKLDTLKKLIHTMLDDKTQIPKEHFRTKKMCIITPTEGEALLIFAHLRKTRDAWSKA 835

Query: 88  FP-------QGRTLDKDPCTIQEW-NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     G +  +    ++ +  +G     +L A  +  G GL+L    N LV   L
Sbjct: 836 IKPKPVWLHSGMSSTEAAEVVRTFKQKGNAAANILVAPLSRAGTGLDLPQ-ANYLVLTGL 894

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRL------------ 184
            W   +++Q   RI      +AG      ++ ++++    +  +  R             
Sbjct: 895 GWRKRDNKQAFYRI-----HRAGQTLETHLHLIVSRGNPAERRIWARHSGGKVASETAWK 949

Query: 185 ---RTKSTIQDLLLNALK 199
                 +  QD L +A+K
Sbjct: 950 VFAENDTIPQDELPDAVK 967


>gi|121594565|ref|YP_986461.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606645|gb|ABM42385.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 756

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGLKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFLQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 693 GQKQPVRVIYL 703


>gi|149209377|ref|XP_001522063.1| hypothetical protein MGCH7_ch7g180 [Magnaporthe oryzae 70-15]
 gi|86196135|gb|EAQ70773.1| hypothetical protein MGCH7_ch7g180 [Magnaporthe oryzae 70-15]
          Length = 1001

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 40/198 (20%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEV--------IIEKANAAPIIVAYHFNSDLARLQKA 87
           AN A     +K    + D+K +  +         II       +++  H         KA
Sbjct: 795 ANSAKLDTLKKLIHTMLDDKTQIPKEHFRTKKMCIITPTEGEALLIFAHLRKTRDAWSKA 854

Query: 88  FP-------QGRTLDKDPCTIQEW-NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     G +  +    ++ +  +G     +L A  +  G GL+L    N LV   L
Sbjct: 855 IKPKPVWLHSGMSSTEAAEVVRTFKQKGNAAANILVAPLSRAGTGLDLPQ-ANYLVLTGL 913

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRL------------ 184
            W   +++Q   RI      +AG      ++ ++++    +  +  R             
Sbjct: 914 GWRKRDNKQAFYRI-----HRAGQTLETHLHLIVSRGNPAERRIWARHSGGKVASETAWK 968

Query: 185 ---RTKSTIQDLLLNALK 199
                 +  QD L +A+K
Sbjct: 969 VFAENDTIPQDELPDAVK 986


>gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 428

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 17/127 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD-- 97
           E+K +    D+K K L  +I   N   +IV  +          RL K   +   +  D  
Sbjct: 247 EQKVYITNTDDKFKLLYNLITGMNMDKVIVFANRRDITRRVSDRLHKKGLKVSLISGDVP 306

Query: 98  ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 T++ +  G + +L A     G G+++  G + +V ++L  D E++   + RIG 
Sbjct: 307 QTQRSKTLERFRAGDLQVLIA-TDVAGRGIHI-DGVSHVVNYNLPEDPEDY---VHRIG- 360

Query: 154 TRQRQAG 160
            R  +AG
Sbjct: 361 -RTGRAG 366


>gi|323359212|ref|YP_004225608.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
           StLB037]
 gi|323275583|dbj|BAJ75728.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
           StLB037]
          Length = 549

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 10/138 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----CTIQEWNEGK 108
            KI  +  ++++     I+V   +   +  L +A    +     P        Q +  G+
Sbjct: 395 AKIDVVRRLVDRHPDERILVIGQYLDQIDELSEALDAPKITGATPVAEREELFQAFRVGE 454

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I LL          ++L      +     +   +E  Q + R+   +Q           Y
Sbjct: 455 ISLLIVS-KVANFSVDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPKQ----SNHTASFY 509

Query: 169 YLIAQNTIDELVLQRLRT 186
            LIA++T+D+   Q  + 
Sbjct: 510 TLIARDTVDQDFAQNRQR 527


>gi|319955980|ref|YP_004167243.1| hypothetical protein Nitsa_0222 [Nitratifractor salsuginis DSM
           16511]
 gi|319418384|gb|ADV45494.1| hypothetical protein Nitsa_0222 [Nitratifractor salsuginis DSM
           16511]
          Length = 404

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 30/184 (16%)

Query: 5   HKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+    L G  +  A         C QL  G +    +      HD   + +   I
Sbjct: 235 EMLKRDRVLRLPGGVVFAADTPIGLVNGCYQLECGCLKVGLD-----YHDTGEREMAEYI 289

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +K              D+A + +   Q R  +++              +     +   G+
Sbjct: 290 KKRWGDSE--------DVAIMCRWVGQRRIFEREFK----------KAMILSSHAHAEGV 331

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L +  +++V  SL +     QQ   R           K  + V+ L+++  + E V Q 
Sbjct: 332 ELSHIEHLIV-ASLDYSTARFQQRNARQASK-----QRKSPINVHILLSRGNVSEAVYQA 385

Query: 184 LRTK 187
           +  K
Sbjct: 386 VALK 389


>gi|254524909|ref|ZP_05136964.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219722500|gb|EED41025.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 759

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EK     ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIEICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLVTNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|222778489|ref|YP_002576126.1| DNA methylase/helicase [Campylobacter lari RM2100]
 gi|222539774|gb|ACM64874.1| DNA methylase/helicase [Campylobacter lari RM2100]
          Length = 1934

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 16/153 (10%)

Query: 42   YDEEKHWKEV--HDEKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQGRTLDKDP 98
             D  K   E+     K      I++K  A  I      F  D           +T  +  
Sbjct: 1476 DDNNKTLDELLAEQSKFDVYTDILKKLVAKGIPQNEIRFIHD----------AKTDLQKG 1525

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE---RIGVTR 155
                + N GK  +L       G G N+Q     L      W   + +Q      R G   
Sbjct: 1526 QLFSDMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNEL 1585

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              +      V  +    + T D  + Q + +K+
Sbjct: 1586 FMRDPQNFRVKEFRYATERTYDARMWQVIESKA 1618


>gi|145226111|ref|YP_001136765.1| helicase domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218574|gb|ABP47977.1| Superfamily II DNA/RNA helicases, SNF2 family [Mycobacterium gilvum
           PYR-GCK]
          Length = 853

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 40/218 (18%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +Y + +R L    +     +          +  Q+    +  D   +W    D KI AL 
Sbjct: 643 RYEELRRTLPAKTKWVNSTVFKTTLRKDLERDNQMLTRML--DRFGNWDSNRDSKINALV 700

Query: 61  VIIEKAN-AAPIIVAYHF-------------------------NSDLARLQKAF-PQGRT 93
            ++   +    ++V   +                           D A + + F P    
Sbjct: 701 DLLRNDHADEKVLVFTEYVDTAEYVAQALQEAGIDKVAVVSGNTDDPAAIARRFSPHSNR 760

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +        E     + +L A       G NLQ   +I+V + L W +    Q   R+  
Sbjct: 761 IPGQEEPTDEDPADAVDVLVA-TDVLSEGQNLQDS-HIVVNYDLPWAIIRIIQRAGRVD- 817

Query: 154 TRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               + G K   VF+Y LI+   ++  +  R R ++ +
Sbjct: 818 ----RVGQKSDKVFIY-LISHENVEAQINLRQRIRARL 850


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKD------PCTI 101
            ++KIKALE ++++      IV      D A     LQ+     R +  D         +
Sbjct: 224 SEDKIKALEKLLKEHEGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVM 283

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           + + EGK+ +L A       G++++  G +++ + L  + E +   + RIG T R  + G
Sbjct: 284 RAFREGKVKVLVA-TDVAARGIDIKDVG-LVINYELPENPESY---VHRIGRTGRAGREG 338


>gi|156847230|ref|XP_001646500.1| hypothetical protein Kpol_1048p73 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117177|gb|EDO18642.1| hypothetical protein Kpol_1048p73 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1549

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 49   KEVHDEKIKALEVII-------EKANAAP--IIVAYHFNSDLARLQ--------KAFPQG 91
            KE +  KI ++  +I       E  N  P  I++       L  +         K     
Sbjct: 1347 KESYGAKIDSVVKLILYLRIKAESENDEPPQILLYSQSLDFLKVISEVLTIHDIKHLSSL 1406

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     TI+++  +     L  +  + G GLNL    +I +      +  +  Q   R
Sbjct: 1407 SNVATVGGTIEKFKEDYSYTCLLLNVKTLGAGLNLLNARHIFLL-DPIINNNDELQAKSR 1465

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ---RLRTKST 189
                   + G  +  FV+  + +N+++E +++    L  K  
Sbjct: 1466 -----NNRIGQTKTTFVWNFMIRNSVEENIMRYKCMLDGKRK 1502


>gi|44004463|ref|NP_982131.1| hypothetical protein BCE_A0124 [Bacillus cereus ATCC 10987]
 gi|42741529|gb|AAS44974.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 502

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 169 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVT 228

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 229 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 284

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 285 --HWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 323


>gi|212633452|ref|YP_002309977.1| ATP-dependent helicase HepA [Shewanella piezotolerans WP3]
 gi|254789696|sp|B8CIB4|RAPA_SHEPW RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|212554936|gb|ACJ27390.1| SNF2-like:Helicase [Shewanella piezotolerans WP3]
          Length = 968

 Score = 44.5 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 30/192 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQ--------LANGAVYYDEEKHWKE--VHDEKIKALEVII 63
            +  + + A   ++   K L         L+   +Y D +         D ++  L   +
Sbjct: 440 PMPEQYVTASRVSAMMNKHLDTNAKVRQVLSPEKIYQDFDSGSASWWKFDPRVDWLIDFL 499

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--------WNEGKIP 110
           +   +  +++          L++A       Q     +    I+            G   
Sbjct: 500 KTNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQETGGAQ 559

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L         G N Q+  + LV F L  + +  +Q I R+      + G K  V ++  
Sbjct: 560 ALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHLP 612

Query: 171 IAQNTIDELVLQ 182
               T  E ++Q
Sbjct: 613 YLAGTAQERLMQ 624


>gi|301116782|ref|XP_002906119.1| F-box protein, putative [Phytophthora infestans T30-4]
 gi|262107468|gb|EEY65520.1| F-box protein, putative [Phytophthora infestans T30-4]
          Length = 1126

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLF 113
           +A     I+   F   +   + AF Q      D               +   +  + +L 
Sbjct: 844 QARNLKAIIFSQFKDHIWHTKVAFAQQGLHTADFIAGLSPEIRMKQLTRFRKDPNVNVLL 903

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  HGL+L +  +I +   +W       + +ER  ++R  + G   AV V  L  +
Sbjct: 904 L-TEVGSHGLDLSFVTHIFLMDEIW------DKSLERQVISRAHRMGANHAVVVEQLWMR 956

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
            +++  +L+        Q  L
Sbjct: 957 GSVESHMLKPHELSDENQIEL 977


>gi|145631648|ref|ZP_01787412.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
 gi|144982727|gb|EDJ90259.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
          Length = 923

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +  A    V +   S + R           D+      +   G   LL +   
Sbjct: 471 QLEQILREREAIRTAVFHEKMSIIER-----------DRAAAYFADLENGAQVLLSSSIG 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           S G   N Q+  N LV F L  + +  +Q I R+      + G KR V +Y   A+++
Sbjct: 520 SEGR--NFQFATN-LVLFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|71281299|ref|YP_270887.1| RecQ domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147039|gb|AAZ27512.1| RecQ domain protein [Colwellia psychrerythraea 34H]
          Length = 690

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 24/163 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            K K LE II     A I V          + +   Q              D      Q+
Sbjct: 224 HKNKQLEQIISAQQGAGI-VYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQD 282

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNI--LVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  GKI ++ A  A  G G+      NI  ++ + L   +E + Q I R       + G 
Sbjct: 283 FMAGKIQVIVATIA-FGMGI---DKSNIRFVIHYDLPKSIENYSQEIGR-----AGRDGL 333

Query: 162 KRAVFVY-YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               F    L   NT++  V       + I ++LLN +K E I
Sbjct: 334 PSQCFTLANLDGLNTVENFVYGDTPEFTGI-EMLLNTIKSEVI 375


>gi|183217332|gb|ACC59251.1| putative restriction-modification protein [Streptococcus pneumoniae]
          Length = 2028

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ   RI   
Sbjct: 1708 EKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRIIRQ 1767

Query: 155  R 155
             
Sbjct: 1768 G 1768


>gi|262200372|ref|YP_003271580.1| helicase [Gordonia bronchialis DSM 43247]
 gi|262083719|gb|ACY19687.1| helicase domain protein [Gordonia bronchialis DSM 43247]
          Length = 937

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 95  DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +K    ++ + +   P+ +         GLNL    + LV + L W     QQ   RI  
Sbjct: 487 EKIQAVVEGFGQKASPIRILIASDMASEGLNLHKECHQLVHYDLPWSFIRIQQRNGRIDR 546

Query: 154 TRQRQAGF 161
             Q  +  
Sbjct: 547 YGQLHSPQ 554


>gi|217969400|ref|YP_002354634.1| DEAD-like helicase [Thauera sp. MZ1T]
 gi|217506727|gb|ACK53738.1| DEAD-like helicase [Thauera sp. MZ1T]
          Length = 756

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFLQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 693 GQKQPVRVIYL 703


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RT 93
           ++K ++     K + L   I + N   ++V         RL +   +           +T
Sbjct: 219 DQKTYRVDKSRKTEMLIKFINEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKT 278

Query: 94  LDKDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     +  +  GKI +L A   A+ G  + L      ++ + L    E++   + RIG
Sbjct: 279 QNARVKALAGFKSGKIRVLVATDIAARGLDIPLLP---YVINYELPNVPEDY---VHRIG 332

Query: 153 VT-RQRQAGF 161
            T R   +G 
Sbjct: 333 RTGRAGASGQ 342


>gi|295135292|ref|YP_003585968.1| DNA methylase [Zunongwangia profunda SM-A87]
 gi|294983307|gb|ADF53772.1| putative DNA methylase [Zunongwangia profunda SM-A87]
          Length = 1842

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  K P   ++ N G+I +L       G GLN+Q     +    + W   E +Q   R  
Sbjct: 1424 TDRKKPELFRKMNWGEIRILIGSTEKAGTGLNVQERVVAMHHLDIPWKPSELEQRNGRGA 1483

Query: 153  VTRQRQAGF--KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                R A       V  Y    + ++D      L+ K T     ++ +K   ++V
Sbjct: 1484 RQGNRIAKEHYGNQVQNYVYAVEQSLDNYKFNLLKNKQT----FISQMKNSELNV 1534


>gi|221133000|ref|XP_002168809.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 130

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/99 (8%), Positives = 27/99 (27%), Gaps = 12/99 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QG 91
            ++        K+  L+ ++ +       +++       +  L++               
Sbjct: 32  PDRSTLASDSGKLLVLDKLLTRLKKEDHRVLIYSQMTKMIDILEEFMKFRKHSYMRLDGS 91

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             +      + ++    I        + G G+NL     
Sbjct: 92  SKISDRRDMVSDFQSRDIFAFLLSTRAGGLGINLTAADT 130


>gi|313105927|ref|ZP_07792189.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa 39016]
 gi|310878691|gb|EFQ37285.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa 39016]
          Length = 749

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 571 KEQALVDLCLEEKAKGRKVLTYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARRED 630

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 631 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 684

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 685 GQKHPVRV 692


>gi|168003780|ref|XP_001754590.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162694211|gb|EDQ80560.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1267

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EG 107
            L  + ++ + A +++   F   +A L+  F +             + K    I+ +  + 
Sbjct: 1137 LAKVRKEHDGAKVLIFSQFMQTIAWLKAEFKKQGINYRFISGDMPMKKRAQAIEAFQKDP 1196

Query: 108  KIPLLFAHPASCGHGLNLQYGGNI 131
               +      +   G+ L    ++
Sbjct: 1197 PTTVFLLSIRTGAVGITLTAASHV 1220


>gi|330994947|ref|ZP_08318868.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
 gi|329757931|gb|EGG74454.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
          Length = 1699

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 13/167 (7%)

Query: 31   KCLQLANGAVYYD-EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAY-HFNSDLARL--- 84
            +  Q  + + Y D E     ++          +  E A       AY     +L RL   
Sbjct: 1261 RIWQETSESRYSDPETGRPYDLPGAVQMIFSDLGTESAMETRGFSAYTWIRDELIRLGVP 1320

Query: 85   QKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            +      +   K     + +   N G+  +L    A+ G G+N Q     L    + W +
Sbjct: 1321 RAEIAFMQHYRKSAAKQKLFGDLNAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLV 1380

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +  Q   RI    +RQ      + +Y    Q ++D    Q L  K 
Sbjct: 1381 SDIIQREGRI----ERQGNQHAEIELYAYAQQGSVDATNWQLLERKQ 1423


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 28/167 (16%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
            V  +K   L  ++ +     +I+         R+     +           R   +   
Sbjct: 353 VVASQKFDLLIDLLSRTEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVE 412

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQ 158
            ++ +  GK  +L A       GL++  G + ++ + +  + E++   + RIG T R   
Sbjct: 413 ALEGFKSGKFEVLVA-TDIAARGLDI-AGVSHVINYDVPENPEDY---VHRIGRTGRANA 467

Query: 159 AGFKRAVFVYYLIAQN------TIDELV-LQRLRTKSTIQDLLLNAL 198
           +G         L+ ++      +I+  +  +  R K    D + +AL
Sbjct: 468 SGDAFT-----LVTEDDVRDARSIERYINAEIERKKIDGFDYIYSAL 509


>gi|124267554|ref|YP_001021558.1| plasmid-like protein [Methylibium petroleiphilum PM1]
 gi|124260329|gb|ABM95323.1| conserved plasmid-related protein [Methylibium petroleiphilum PM1]
          Length = 757

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFLQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 693 GQKQPVRVIYL 703


>gi|254238747|ref|ZP_04932070.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170678|gb|EAZ56189.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 751

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 573 KEQALVDLCLEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARRED 632

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 633 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 686

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 687 GQKHPVRV 694


>gi|313633425|gb|EFS00257.1| SNF2 family protein [Listeria seeligeri FSL N1-067]
          Length = 399

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 31/154 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E +I        I+   +      LQKAFP  +                  
Sbjct: 266 LASEKFTITESLI-AGKEDSTIIFCKYKRSEEALQKAFPNVK------------------ 306

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ   N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 307 --VTTFAKSSYGLNLQ-AYNQIIYFDKTFDYSQRDQSERRI-----YRTGQNQDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                +D ++   +  K+     LLN +KKE   
Sbjct: 359 SGNVGLDHIIDTNISKKTN----LLNEIKKELAQ 388


>gi|242210723|ref|XP_002471203.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729762|gb|EED83631.1| predicted protein [Postia placenta Mad-698-R]
          Length = 2759

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 68   AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
             +  IV   +   L  L+           +   K+    +   +  I +L  H      G
Sbjct: 1341 GSKTIVFSAWADSLLMLKLWSGISCLRIDQHSGKENAAKRFRTDSSISVLLLHGERENAG 1400

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LN+     + +  S+  +     Q I RI      + G  R   VY    ++T+++ +L 
Sbjct: 1401 LNVTCASRVFLVESVV-NHAFELQAIARID-----RMGQLRPTEVYCYYTEDTVEKSILD 1454

Query: 183  RLRTKS 188
             L  K 
Sbjct: 1455 -LAAKQ 1459


>gi|208434933|ref|YP_002266599.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208432862|gb|ACI27733.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 2808

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2339 DAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRSDELLQMEG 2398

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2399 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2451


>gi|254409584|ref|ZP_05023365.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183581|gb|EDX78564.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 505

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      + K++ L  ++ K     I+V  + N+ + R+ +           P     
Sbjct: 312 ESKEIALGTEGKLRVLADLVAKHYPERILVFTNDNATVYRISQELLIPAITHHTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +Q + EG   +L A       G+++     + +  S      E+ Q   R+G   ++ 
Sbjct: 372 EILQRFREGDYKILVAS-HVLNEGVDVPD-ARVAIILSGTGSEREYVQ---RLGRVLRKG 426

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +   +Y +IA+NT +E   QR R 
Sbjct: 427 TDQNKLAILYEVIAENTSEEGTSQRRRG 454


>gi|291037268|ref|ZP_06568232.1| DNA methylase/helicase SNF2 [Gluconacetobacter xylinus NBRC 3288]
          Length = 1699

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 13/167 (7%)

Query: 31   KCLQLANGAVYYD-EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAY-HFNSDLARL--- 84
            +  Q  + + Y D E     ++          +  E A       AY     +L RL   
Sbjct: 1261 RIWQETSESRYSDPETGRPYDLPGAVQMIFSDLGTESAMETRGFSAYTWIRDELIRLGVP 1320

Query: 85   QKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            +      +   K     + +   N G+  +L    A+ G G+N Q     L    + W +
Sbjct: 1321 RAEIAFMQHYRKSAAKQKLFGDLNAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLV 1380

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +  Q   RI    +RQ      + +Y    Q ++D    Q L  K 
Sbjct: 1381 SDIIQREGRI----ERQGNQHAEIELYAYAQQGSVDATNWQLLERKQ 1423


>gi|282883052|ref|ZP_06291653.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297109|gb|EFA89604.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
          Length = 2539

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2013 RGEVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENNKV 2068

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2069 NIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2100


>gi|148807330|gb|ABR13404.1| putative helicase [Pseudomonas aeruginosa]
          Length = 749

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 571 KEQALVDLCLEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARRED 630

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 631 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 684

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 685 GQKHPVRV 692


>gi|330824360|ref|YP_004387663.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329309732|gb|AEB84147.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 756

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRCIDVLITNPELVKTGLDLLEFP-TIVFLQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 693 GQKQPVRVIYL 703


>gi|237751872|ref|ZP_04582352.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
            BAA-430]
 gi|229376705|gb|EEO26796.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
            BAA-430]
          Length = 1935

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 54   EKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
             K      I++K  A  I      F  D           +T  +      + N GK  +L
Sbjct: 1491 SKFDVYTDILKKLVAKGIPQNEIRFIHD----------AKTDLQKSQLFADMNTGKARIL 1540

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE---RIGVTRQRQAGFKRAVFVYY 169
                   G G N+Q     L      W   + +Q      R G     +      V  + 
Sbjct: 1541 IGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFR 1600

Query: 170  LIAQNTIDELVLQRLRTKS 188
               + T D  + Q + +K+
Sbjct: 1601 YATERTYDARMWQVIESKA 1619


>gi|223985013|ref|ZP_03635111.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
 gi|223962985|gb|EEF67399.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
          Length = 2945

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
            +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 2518 TLDNPLLHALEGAVPLPEQEPAFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 2572

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 2573 KELFSKVRT-------------GQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 2619

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q   RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2620 AQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2668


>gi|261820937|ref|YP_003259043.1| DEAD/DEAH box helicase [Pectobacterium wasabiae WPP163]
 gi|261604950|gb|ACX87436.1| DEAD-like helicase [Pectobacterium wasabiae WPP163]
          Length = 759

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     ++   +        RL+    Q               +   
Sbjct: 581 KERELIDICKQEKAEGRKTLIYSVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYTLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 695 GQKQPVKVIYL 705


>gi|313638106|gb|EFS03371.1| SNF2 family protein [Listeria seeligeri FSL S4-171]
          Length = 399

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 31/154 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E +I        I+   +      LQKAFP  +                  
Sbjct: 266 LASEKFTITESLI-AGKEDSTIIFCKYKRSEEALQKAFPNVK------------------ 306

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ   N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 307 --VTTFAKSSYGLNLQ-AYNQIIYFDKTFDYSQRDQSERRI-----YRTGQNQDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                +D ++   +  K+     LLN +KKE   
Sbjct: 359 SGNVGLDHIIDTNISKKTN----LLNEIKKELAQ 388


>gi|321258687|ref|XP_003194064.1| DNA repair protein rad16 [Cryptococcus gattii WM276]
 gi|317460535|gb|ADV22277.1| DNA repair protein rad16, putative [Cryptococcus gattii WM276]
          Length = 975

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 24/144 (16%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           E+  DL+ E ++   +   T K  Q   G +   +  +W+     K++AL   +EK    
Sbjct: 836 EISIDLEAEALDLEEN---TKKARQ---GILSRLDLNNWR--SSSKLEALVEELEKLRHK 887

Query: 70  ----PIIVAYHFNSDLA----RLQKA------FPQGRTLDKDPCTIQEW-NEGKIPLLFA 114
                 +V   F S L     RLQ+A         G T  +   TIQ +     + +   
Sbjct: 888 DCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGGMTPQQRDATIQHFMKHTGVTVFLI 947

Query: 115 HPASCGHGLNLQYGGNILVFFSLW 138
              + G  LNL    +++     W
Sbjct: 948 SLKAGGVALNLTE-ASMVFMMDSW 970


>gi|302343997|ref|YP_003808526.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640610|gb|ADK85932.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
          Length = 1065

 Score = 44.2 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 22/125 (17%)

Query: 67  NAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           N   +I+   + +                 RL          +++P          I  +
Sbjct: 524 NGKRVILFTEYRATHSWLHQILTANGYGGDRLMYLHGSMPPDEREPVKAAFQAHPDISPV 583

Query: 113 FAHPA--SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-AVFVYY 169
               A  +   G++LQ   N L+   + W+    +Q   RI      + G K   VF+++
Sbjct: 584 RILLATDAASEGIDLQNHCNYLIHVEIPWNPNVMEQRNGRID-----RHGQKEDTVFIWH 638

Query: 170 LIAQN 174
            + + 
Sbjct: 639 PVGKG 643


>gi|331226118|ref|XP_003325729.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309304719|gb|EFP81310.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 76

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+     Q I+ +      + G  + V VY      T++  + Q  R K  + 
Sbjct: 3   PSWNPAMEAQAIDCL-----YRLGQVKPVNVYRYYVHGTLETNIYQIQRRKGELA 52


>gi|152986816|ref|YP_001349842.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa PA7]
 gi|150961974|gb|ABR83999.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa PA7]
          Length = 749

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 571 KEQALVDLCLEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARRED 630

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 631 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 684

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 685 GQKHPVRV 692


>gi|154502921|ref|ZP_02039981.1| hypothetical protein RUMGNA_00741 [Ruminococcus gnavus ATCC 29149]
 gi|153796460|gb|EDN78880.1| hypothetical protein RUMGNA_00741 [Ruminococcus gnavus ATCC 29149]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
           +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 52  TLDNPLLHALEGAVPLPEQEPAFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 106

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 107 KELFSKVRT-------------GQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 153

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 154 AQRKGRI----ERQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 202


>gi|15611993|ref|NP_223645.1| hypothetical protein jhp0928 [Helicobacter pylori J99]
 gi|4155507|gb|AAD06506.1| putative [Helicobacter pylori J99]
          Length = 2231

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 1889 DAKTEEQKQDLFKKLNRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 1948

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 1949 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2001


>gi|255692111|ref|ZP_05415786.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
 gi|260622210|gb|EEX45081.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
          Length = 1908

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 1416 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 1475

Query: 146  QMIER 150
            Q   R
Sbjct: 1476 QRDGR 1480


>gi|163855369|ref|YP_001629667.1| hypothetical protein Bpet1064 [Bordetella petrii DSM 12804]
 gi|163259097|emb|CAP41396.1| conserved plasmid related protein [Bordetella petrii]
          Length = 770

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 590 SPKERELIEICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRR 649

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 650 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 703

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 704 RIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 739


>gi|189468324|ref|ZP_03017109.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
            17393]
 gi|189436588|gb|EDV05573.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
            17393]
          Length = 1908

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 1416 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 1475

Query: 146  QMIER 150
            Q   R
Sbjct: 1476 QRDGR 1480


>gi|29347736|ref|NP_811239.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339637|gb|AAO77433.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1908

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 1416 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 1475

Query: 146  QMIER 150
            Q   R
Sbjct: 1476 QRDGR 1480


>gi|219115954|ref|XP_002178772.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409539|gb|EEC49470.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 51

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            W+ +   Q   R       + G  + V +Y L+   + ++ +  R   K  ++  
Sbjct: 1   DWNPQNDVQAQARC-----HRIGQTKDVRIYRLVTSRSFEQEMFDRASRKLGLEQA 51


>gi|229827047|ref|ZP_04453116.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
            49176]
 gi|229788665|gb|EEP24779.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
            49176]
          Length = 2218

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 +   G++ +L       G G N+Q     L    + W   + +Q   RI     R
Sbjct: 1779 EKVFSKVRTGEVRILMGSTHKMGAGTNVQNKLIALHDLDVPWRPSDLEQRAGRIV----R 1834

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q      V++Y  + +NT D  + Q +  K      ++ +
Sbjct: 1835 QGNENSDVYIYRYVTENTFDAYLWQTIENKQKFISQIMTS 1874


>gi|156539035|ref|XP_001599281.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1,
           partial [Nasonia vitripennis]
          Length = 224

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 22/153 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           +E+    +    ++   A K    LQ      YY E    KE        +  +IE  N 
Sbjct: 83  KEMEAASKEMQKKSLTGAQKHGALLQ------YYSESSKAKE--KAVCNYVTDLIE--NQ 132

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGK-IPLLFAHPA 117
              ++  H  + +  +       + L          ++    +  + + + + +      
Sbjct: 133 QKFLIFAHHKNMMDAISNLLTSKKVLFIRIDGKTHPEQRKQFVDTFQQNENVLVAVLSIT 192

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +   G+ L     ++VF  L W+     Q  +R
Sbjct: 193 AANAGITLT-AAQLVVFAELSWNPGILCQAEDR 224


>gi|320531413|ref|ZP_08032379.1| protein, SNF2 family [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136366|gb|EFW28348.1| protein, SNF2 family [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 996

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++++ +   P+ +         G+NL    + L+ + + W L   +Q   RI   
Sbjct: 486 EQQEIVEQFRQAHTPVRVLVTGDVASEGVNLHAQCHELIHYDIPWSLIRIEQRNGRIDRY 545

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q  +     + +     + + D  VL RL  K  
Sbjct: 546 GQSVSPQITTLLLSPSDPRFSGDVRVLTRLMEKED 580


>gi|291536748|emb|CBL09860.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2550

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2171 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2230

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2231 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2274


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+K  +     K + L  I++       +V          +     Q     
Sbjct: 435 VGGACSDVEQKFIEVTKFSKREQLLDILKTTGTERTMVFVETKRQADFIATFLCQEKVPT 494

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 495 TSIHGDREQREREQALADFRSGRCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 551

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 552 --VHRIG--RTGRCGNTGRAVSFY 571


>gi|291525613|emb|CBK91200.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2510

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2131 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2190

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2191 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|210610421|ref|ZP_03288401.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
 gi|210152498|gb|EEA83504.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
          Length = 2510

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2131 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2190

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2191 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---- 94
           AV   ++  +    D K+  L  II + N + ++V  +    ++RL     +        
Sbjct: 273 AVDSVDQVVYIVTSDRKLALLYNIIVQQNLSRVLVFCNRKDAVSRLADRLTRYGIKCEIL 332

Query: 95  ------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  K    ++++  GKI +L A       G++++   + +V F L  D E++   +
Sbjct: 333 TGDVPQQKRSRRLEDFKSGKIRVLVA-TDVMARGIHVED-MDHVVNFDLPHDPEDY---V 387

Query: 149 ERIGVTRQRQAG 160
            RIG  R  +AG
Sbjct: 388 HRIG--RTGRAG 397


>gi|148654475|ref|YP_001274680.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566585|gb|ABQ88730.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 1128

 Score = 44.2 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 33/164 (20%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
             W    D K+ AL  ++   +    I++   F          + Q R    +   +   
Sbjct: 708 GDWNPGADAKLHALASLVTNDHPNEKILIFTQFADTA---LYLYEQLRARGIEDVAVLTN 764

Query: 105 NEGKIPLLFA---HPASCG-------------------HGLNLQYGGNILVFFSLWWDLE 142
            EG  P+       P++ G                    G NLQ   +ILV + L W + 
Sbjct: 765 QEGD-PVTLTRRFSPSTNGGLAEGETELRVLIATDVLAEGQNLQD-AHILVNYDLPWAIV 822

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              Q   R+    Q        + +Y       + E +++    
Sbjct: 823 RLIQRAGRVDRIGQ----QHDTIRIYSFWPAEGV-EKIIRLRER 861


>gi|291086945|ref|ZP_06571733.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076446|gb|EFE13810.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 2527

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2148 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2207

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2208 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2251


>gi|255008728|ref|ZP_05280854.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146464|ref|ZP_07808657.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135231|gb|EFR52591.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1911

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 1420 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 1479

Query: 146  QMIER 150
            Q   R
Sbjct: 1480 QRDGR 1484


>gi|129282387|gb|ABO30185.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282389|gb|ABO30186.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282391|gb|ABO30187.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282393|gb|ABO30188.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282395|gb|ABO30189.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282397|gb|ABO30190.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282399|gb|ABO30191.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282401|gb|ABO30192.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282403|gb|ABO30193.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282405|gb|ABO30194.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282407|gb|ABO30195.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282409|gb|ABO30196.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282411|gb|ABO30197.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282413|gb|ABO30198.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282415|gb|ABO30199.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282417|gb|ABO30200.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282419|gb|ABO30201.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282421|gb|ABO30202.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282423|gb|ABO30203.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282425|gb|ABO30204.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282427|gb|ABO30205.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282429|gb|ABO30206.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282431|gb|ABO30207.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282433|gb|ABO30208.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282435|gb|ABO30209.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282437|gb|ABO30210.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282439|gb|ABO30211.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282441|gb|ABO30212.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282443|gb|ABO30213.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282445|gb|ABO30214.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282447|gb|ABO30215.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282449|gb|ABO30216.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282451|gb|ABO30217.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282453|gb|ABO30218.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282455|gb|ABO30219.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282457|gb|ABO30220.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282459|gb|ABO30221.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282461|gb|ABO30222.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282463|gb|ABO30223.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282465|gb|ABO30224.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282467|gb|ABO30225.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282469|gb|ABO30226.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282471|gb|ABO30227.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282473|gb|ABO30228.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282475|gb|ABO30229.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282477|gb|ABO30230.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282479|gb|ABO30231.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282481|gb|ABO30232.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282483|gb|ABO30233.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282485|gb|ABO30234.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282487|gb|ABO30235.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282489|gb|ABO30236.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282491|gb|ABO30237.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282493|gb|ABO30238.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282495|gb|ABO30239.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282497|gb|ABO30240.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282499|gb|ABO30241.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282501|gb|ABO30242.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282503|gb|ABO30243.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282505|gb|ABO30244.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282507|gb|ABO30245.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282509|gb|ABO30246.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282511|gb|ABO30247.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282513|gb|ABO30248.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282515|gb|ABO30249.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282517|gb|ABO30250.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282519|gb|ABO30251.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282521|gb|ABO30252.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282523|gb|ABO30253.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282527|gb|ABO30255.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282529|gb|ABO30256.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282531|gb|ABO30257.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282533|gb|ABO30258.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282535|gb|ABO30259.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282537|gb|ABO30260.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282539|gb|ABO30261.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282541|gb|ABO30262.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282543|gb|ABO30263.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282545|gb|ABO30264.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282547|gb|ABO30265.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282549|gb|ABO30266.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282551|gb|ABO30267.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282553|gb|ABO30268.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282555|gb|ABO30269.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282557|gb|ABO30270.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282559|gb|ABO30271.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282561|gb|ABO30272.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282563|gb|ABO30273.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282565|gb|ABO30274.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282567|gb|ABO30275.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282569|gb|ABO30276.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282571|gb|ABO30277.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282573|gb|ABO30278.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282575|gb|ABO30279.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282577|gb|ABO30280.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282579|gb|ABO30281.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282581|gb|ABO30282.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282583|gb|ABO30283.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282585|gb|ABO30284.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282587|gb|ABO30285.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282589|gb|ABO30286.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282591|gb|ABO30287.1| SNF2 family N-terminal domain protein [Triticum aestivum]
          Length = 69

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +E     R  + G  + +     + ++T++E +LQ    K  + D
Sbjct: 1   VESQAQDRIHRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFD 45


>gi|326943646|gb|AEA19539.1| hypothetical protein CT43_P281197 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 788

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           L+ ++E+ + A + +                   T  K    +++     + ++      
Sbjct: 507 LQKVVEQISGAKVAILRTNT-------------VTPPKRSEWLKDQVNSGVNVIICSLEL 553

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL+L      L+F+ L + L    Q   R       + G  +    +YL  + T  +
Sbjct: 554 VKVGLDL-LATPTLIFYQLPFSLFALNQAARR-----HCRIGQTKQCRTFYLGYRETFQQ 607

Query: 179 LVLQRLRTKSTIQDLLLNALKKETI 203
            + Q +  K+   + +   +  + +
Sbjct: 608 QMAQLIAQKNKAAEAMNGEVTSDGL 632


>gi|325478350|gb|EGC81465.1| helicase C-terminal domain protein [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 2252

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|188991828|ref|YP_001903838.1| conserved hypothetical plasmid protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733588|emb|CAP51793.1| conserved hypothetical plasmid protein [Xanthomonas campestris pv.
           campestris]
          Length = 759

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICKQEKAQGRKVLTYTVYTGKRDTTSRLKVLLEQEDFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLDFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K  V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKEPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|14601169|ref|NP_147698.1| putative DNA repair helicase [Aeropyrum pernix K1]
 gi|5104743|dbj|BAA80058.1| putative DNA repair helicase [Aeropyrum pernix K1]
          Length = 539

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 46  KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDP 98
           K   ++ + KI+A+E ++  E +  + +IV   +      + +         G       
Sbjct: 397 KEIVQLSESKIRAVEKLVREELSRGSKVIVFTQYRRQAEEIARRTGALLLHGGLERRVRE 456

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            T+ ++   K   L         GL++    N+ +  S      +  Q + R+      +
Sbjct: 457 ATLAKFRALKAGALVV-TTVGDEGLDIPD-ANVGILVSGTGSRRQFIQRLGRLL-----R 509

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G  +   +Y +IA+ T +EL  +R R +
Sbjct: 510 PGEGKRAVLYEVIARGTGEELQSRRRRGR 538


>gi|170763976|ref|ZP_02636612.2| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710974|gb|EDT23156.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 477

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +      +   G   ++       G G N+Q     L      +   + +Q   RI    
Sbjct: 133 QREKIFSDMRNGNKRIIIGSTQKMGTGTNIQDRLVSLHHLDCPYRPADLEQREGRII--- 189

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RQ    + V +Y    +NT D  + Q +  K      ++ +
Sbjct: 190 -RQGNMNKEVNIYRYATKNTFDSYLWQIVEQKQKFISQIMTS 230


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 33/170 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKALEVI 62
            +  + L       ++   N+A+ TVK                W      ++K   L  +
Sbjct: 193 RELAKGLVNQPVEISVTPRNAAANTVK---------------QWICPVDKNQKSALLIQL 237

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLL 112
           I++ N   ++V         RL K+  Q                    + ++  G++ +L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
            A       GL++      +V F L    E++   + RIG T R    G 
Sbjct: 298 VA-TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGALGQ 342


>gi|297259808|ref|XP_002808003.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 6-like [Macaca mulatta]
          Length = 2668

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           Q   R       + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 934 QAQARC-----HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 985


>gi|297588629|ref|ZP_06947272.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
 gi|297574002|gb|EFH92723.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
          Length = 2556

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|261403341|ref|YP_003247565.1| helicase domain protein [Methanocaldococcus vulcanius M7]
 gi|261370334|gb|ACX73083.1| helicase domain protein [Methanocaldococcus vulcanius M7]
          Length = 1240

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +  RL K F    +++     +++  EG+I +      S   G+NLQ G + ++ + L W
Sbjct: 861 EKERLIKRF--APSVNNGYEVVEK--EGEIEI-LISTDSLSEGVNLQEG-DGVINYDLPW 914

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV--LQRLRTK 187
           +     Q + R+      + G ++ VFV   +    I+  V  L +L+ K
Sbjct: 915 NPMVIVQRVGRVS-----RIGNEKDVFVKNFVPVQEIEVSVGLLAKLQEK 959


>gi|195867544|ref|ZP_03079547.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195867982|ref|ZP_03079979.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660378|gb|EDX53638.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660788|gb|EDX54042.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
          Length = 2547

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 KGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|187940163|gb|ACD39293.1| SNF2 family-related helicase [Pseudomonas aeruginosa]
          Length = 927

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 82  ARLQKAFPQGR--------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             L+ AFP+          T ++    + +  + +  +L A       G+NLQ+    +V
Sbjct: 493 EHLKAAFPKASIEAVTGELTPEERRERVDDMEDAEQRILVA-TDCLSEGINLQHLFTAVV 551

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQA--------GFKRAV 165
            + L W+   H+Q   R+    Q           G    V
Sbjct: 552 HYDLAWNPTRHEQREGRVDRFGQHAEEVRCTMLYGQDNPV 591


>gi|94995094|ref|YP_603192.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
 gi|94548602|gb|ABF38648.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
          Length = 2547

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|163855630|ref|YP_001629928.1| hypothetical protein Bpet1323 [Bordetella petrii DSM 12804]
 gi|163259358|emb|CAP41658.1| conserved plasmid related protein [Bordetella petrii]
          Length = 757

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++    +        RL+    Q               +   
Sbjct: 579 KERELIDICKAEKAEGRKVLAYTVYTGTRDTTSRLKVLLEQEGLKVAVLRASVDTSRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    W++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLLTNPELVKTGLDLLEFP-TIVFMQSGWNVYTLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K AV V YL
Sbjct: 693 GQKLAVKVIYL 703


>gi|302380800|ref|ZP_07269264.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311400|gb|EFK93417.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 2547

 Score = 44.2 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|304310353|ref|YP_003809951.1| Superfamily II DNA/RNA helicases, SNF2 family [gamma
           proteobacterium HdN1]
 gi|301796086|emb|CBL44290.1| Superfamily II DNA/RNA helicases, SNF2 family [gamma
           proteobacterium HdN1]
          Length = 926

 Score = 44.2 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 28/174 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPI 71
           DL   ++E      +  +   L       + E+   +  D K+ AL   I     +    
Sbjct: 422 DLDSNDLEPPAQLEEASRLQSL-----IQEAERLSGKAGDPKLAALIQHIGTLVKDGYHP 476

Query: 72  IVAYHFNSDL----ARLQKAFPQGR--------TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +V   + +        L+KA P+          T ++    ++   EG   +L A     
Sbjct: 477 VVFCRYIATAHYVADHLRKALPKATIESITGEYTPEERRERVEAMEEGDTRILVA-TDCL 535

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA--------GFKRAV 165
             G+NLQ+    ++ + L W+   H+Q   R+    Q+ A        G    V
Sbjct: 536 SEGINLQHLFTAVIHYDLAWNPTRHEQREGRVDRFGQQAAEVRCTMLYGQDNPV 589


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score = 44.2 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++   +   +V          +     Q     
Sbjct: 414 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGSERTMVFVETKRQADFIATFLCQEKVPT 473

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 474 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 530

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 531 --VHRIG--RTGRCGNTGRAVSFY 550


>gi|308080914|ref|NP_001183699.1| hypothetical protein LOC100502292 [Zea mays]
 gi|238013978|gb|ACR38024.1| unknown [Zea mays]
          Length = 265

 Score = 44.2 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+  +  Q        R  + G +R V V+ L+   +++EL+  R   K  + ++ ++ 
Sbjct: 11  WNPAQDLQA-----QDRSFRYGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSG 64


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 22/154 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------- 94
           ++K +      K  AL  ++        I+         R+ K   +             
Sbjct: 238 DQKVFYTEASAKPDALIDLMAPEAGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKS 297

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    +  +  G+ P+L A       G+++  G +++V + L    E +   + RIG 
Sbjct: 298 QNQRTRALDAFKSGEAPVLVA-TDIAARGIDV-DGVDLVVNYELPNVAENY---VHRIGR 352

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           T  R     RAV      A    DE V+ +   K
Sbjct: 353 T-ARAGASGRAV------ALCAPDERVMLKDIEK 379


>gi|121593689|ref|YP_985585.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120605769|gb|ABM41509.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 759

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIEICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKQPVRVIYLGYSGSSQMTCLELMAKKIMVSQS 728


>gi|282900077|ref|ZP_06308034.1| hypothetical protein CRC_01468 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194959|gb|EFA69899.1| hypothetical protein CRC_01468 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 964

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   + ++ + L W+    +Q   RI    Q      ++  +Y     N +D  VL
Sbjct: 562 GINLQSHFSAVIHYDLPWNPNRLEQREGRIDRYGQIAT-QVKSCLLYG--QDNPVDGAVL 618

Query: 182 QRLRTKS 188
           + L  K+
Sbjct: 619 EVLIRKA 625


>gi|325846329|ref|ZP_08169319.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325481593|gb|EGC84632.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|325849331|ref|ZP_08170748.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480193|gb|EGC83262.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|299741193|ref|XP_001834290.2| hypothetical protein CC1G_11203 [Coprinopsis cinerea okayama7#130]
 gi|298404599|gb|EAU87531.2| hypothetical protein CC1G_11203 [Coprinopsis cinerea okayama7#130]
          Length = 1028

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              +   + R  + G  R V VY L+   +++EL+  R   K  +
Sbjct: 682 PAHDLQAMDRSYRFGQTRDVSVYRLLGAGSVEELIYARQIYKQQL 726


>gi|190404406|ref|YP_001961037.1| rcorf62 [Agrobacterium rhizogenes]
 gi|158322202|gb|ABW33619.1| rcorf62 [Agrobacterium rhizogenes]
          Length = 1702

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 28/197 (14%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVI--- 62
            +L   +   + E  N  +  V+      Q  +   Y   +    ++          +   
Sbjct: 1254 DLRLVIPANDNEEDNKLNLLVRNAFRIWQETSDDTYVRPDGKPFDLPGAAQMIFSDLGTI 1313

Query: 63   -IEKANAAPIIVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             +EK        AY     +  RL          + + +     +    ++    G+I  
Sbjct: 1314 NVEKTRG---FSAYRWIRDEFVRLGVPPSEIAFMQDYKKTEAKQRLFADVR---AGRIRF 1367

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     + G G+N Q     L    + W     +Q   RI     RQ      V ++   
Sbjct: 1368 LIGSSETMGTGVNAQARLKALHHLDVPWLPSHIEQREGRIV----RQGNQHDVVDIFAYA 1423

Query: 172  AQNTIDELVLQRLRTKS 188
             + ++D  + Q    K+
Sbjct: 1424 TEGSLDASMWQNNERKA 1440


>gi|66768365|ref|YP_243127.1| plasmid-related protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|66573697|gb|AAY49107.1| plasmid-related protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 768

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 588 SPKERELIDICKQEKAQGRNVLTYTVYTGKRDTTSRLKVLLEQEGFKVAVLRASVDASRR 647

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 648 EDWIAEQLDRGIDVLITNPELVKTGLDLLDFP-TIVFMQSGYNVYSLQQAARRSW----- 701

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K  V V YL    +     L+ +  K  +   
Sbjct: 702 RIGQKEPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 737


>gi|257067983|ref|YP_003154238.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256558801|gb|ACU84648.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 555

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRT-LDKDPCTIQEWNEGKI 109
           KI  +E I ++    P++V   +   L  + +        G+T + +       + EG+I
Sbjct: 396 KIDVVERIAQRHAGEPMLVIGQYIDQLEEIAERLGADLITGQTPVRRRQELFDAFREGRI 455

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L          ++L      +     +   +E  Q + R+   +  Q    R    Y 
Sbjct: 456 DRLVVS-KVANFSIDLPEASVAVQVSGAFGSRQEEAQRLGRLLRPKADQ----RTAHFYT 510

Query: 170 LIAQNTIDEL 179
           ++ ++T D+ 
Sbjct: 511 VVMRDTQDQD 520


>gi|313888230|ref|ZP_07821902.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845761|gb|EFR33150.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|240147676|ref|ZP_04746277.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200114|gb|EEU98398.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 285

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 59  DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 118

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 119 R----GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 162


>gi|169824650|ref|YP_001692261.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
 gi|167831455|dbj|BAG08371.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|331234511|ref|XP_003329915.1| Snf2 family protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308905|gb|EFP85496.1| Snf2 family protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 76

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+     Q ++R+      + G    V VY    + ++   + Q  + K  + 
Sbjct: 3   PGWNPAAEIQAVDRL-----YRLGQVNPVHVYQYYVRGSLKMNIYQVQKRKGKLA 52


>gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
 gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLD 95
           +K +    D+K   L  +I       +I+  +  S   R+ +   Q         G    
Sbjct: 321 QKVFIVTEDQKFPLLYNLISGEKLERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQ 380

Query: 96  KDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           K    T+ ++  GK+ +L A       GL++  G + ++ + L  D E +   I RIG  
Sbjct: 381 KQRIRTLDDFRNGKVRVLVA-TDVAARGLHI-EGVSHVINYDLPQDPEHY---IHRIG-- 433

Query: 155 RQRQAG 160
           R  +AG
Sbjct: 434 RTGRAG 439


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCTIQE 103
           D+K++A+E II  +    +I+  +    + RL     QG             K    +Q 
Sbjct: 240 DQKLEAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQGHKIVMLSGDVIQQKREKYLQR 299

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +G   +L A     G G+++    + ++ ++L    +++   + RIG  R  +AG  
Sbjct: 300 FKDGHASVLVA-TDVAGRGIHVDDVSH-VINYTLPDQPDDY---VHRIG--RTGRAGQT 351


>gi|254261633|ref|ZP_04952687.1| helicase [Burkholderia pseudomallei 1710a]
 gi|254220322|gb|EET09706.1| helicase [Burkholderia pseudomallei 1710a]
          Length = 962

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +T D     ++ + E GKI +      +   G+NLQ+  ++++ + L W+ +  +
Sbjct: 486 RITDSKTADTRAALVEHFKERGKIMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIE 541

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +   N  D  V   L  K  + + +  A
Sbjct: 542 QRIGRC-----HRYGQKFDVVVVNFVDLSNEADRRVYDLLSQKFQLFEGVFGA 589


>gi|257058474|ref|YP_003136362.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
 gi|256588640|gb|ACU99526.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
          Length = 509

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPC 99
           E K      D K++ L  +I + +   I++  + N+ + R+ + F       +T+ K+  
Sbjct: 312 EAKEIASGTDGKLRVLTDLICEHHNDSILIFTNDNATVYRISQDFLIPAITHQTIVKERH 371

Query: 100 TI-QEWNEGKIPLLFAHPASCGHGLNLQYGGN-----ILVFFSLWWDLEEHQQMIERIGV 153
            I  ++ EG    L        H LN   G +     + +  S      E+ Q   R+G 
Sbjct: 372 DILTKFREGIYKTLVTS-----HVLN--EGVDVPDVKVAIILSGTGSAREYIQ---RLGR 421

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++  G  +   +Y ++A++T +E   QR R +   
Sbjct: 422 ILRKGTGHNKLAILYEVVAEDTTEERTSQRRRGEELT 458


>gi|168206971|ref|ZP_02632976.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
 gi|170661641|gb|EDT14324.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
          Length = 1975

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +      +   G   ++       G G N+Q     L      +   + +Q   RI    
Sbjct: 1629 QREKIFSDMRNGNKRIIIGSTQKMGTGTNIQDRLVSLHHLDCPYRPADLEQREGRII--- 1685

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RQ    + V +Y    +NT D  + Q +  K      ++ +
Sbjct: 1686 -RQGNMNKEVNIYRYATKNTFDSYLWQIVEQKQKFISQVMTS 1726


>gi|289650675|ref|ZP_06482018.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 733

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLGEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLRVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    W++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGWNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V +  +  +     LQ +  K  +   
Sbjct: 688 GQKQDVRVIFFGSIGSSQITCLQLMAKKIAVSQS 721


>gi|157963516|ref|YP_001503550.1| ATP-dependent helicase HepA [Shewanella pealeana ATCC 700345]
 gi|189029433|sp|A8H8X8|RAPA_SHEPA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|157848516|gb|ABV89015.1| SNF2-related protein [Shewanella pealeana ATCC 700345]
          Length = 968

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQ--------LANGAVYYDEEKHWKE--VHDEKIKALEVII 63
            +  + + A+  +S   K L         L+   +Y D +         D ++  L   +
Sbjct: 440 KMPEQYVTAYRVSSMMNKHLDTNAKVRQVLSPEKIYQDFDSGSAAWWKFDPRVDWLIDFL 499

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--------WNEGKIP 110
           +   +  +++          L++A       Q     +    I+            G   
Sbjct: 500 KNNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQESGGAQ 559

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L         G N Q+  N LV F L  + +  +Q I R+      + G K  V ++  
Sbjct: 560 ALICS-EIGSEGRNFQFASN-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHLP 612

Query: 171 IAQNTIDELVLQ 182
              NT  E ++Q
Sbjct: 613 FLANTAQERLMQ 624


>gi|76809589|ref|YP_335023.1| SNF2 family helicase [Burkholderia pseudomallei 1710b]
 gi|76579042|gb|ABA48517.1| helicase (Snf2 family) [Burkholderia pseudomallei 1710b]
          Length = 960

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +T D     ++ + E GKI +      +   G+NLQ+  ++++ + L W+ +  +
Sbjct: 484 RITDSKTADTRAALVEHFKERGKIMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIE 539

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +   N  D  V   L  K  + + +  A
Sbjct: 540 QRIGRC-----HRYGQKFDVVVVNFVDLSNEADRRVYDLLSQKFQLFEGVFGA 587


>gi|307327759|ref|ZP_07606943.1| helicase domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306886657|gb|EFN17659.1| helicase domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 549

 Score = 43.8 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLD-K 96
            DE+  +    D K K  E ++ +      +V   +   L  L +       +G T + +
Sbjct: 382 TDEKYRYCATTDSKRKVTEALVARHKGQQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQ 441

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  + +G++ +L          ++L      +     +   +E  Q + R+   + 
Sbjct: 442 REKLFDAFRQGELSVLVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA 500

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL 179
                      Y ++A++TID+ 
Sbjct: 501 ----DGHPAVFYSVVARDTIDQD 519


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPC 99
              ++K   L  I++K +   +I+         R+ +               R+ ++   
Sbjct: 222 VTFEQKFDLLCAILDKLDYESVIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVE 281

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQ 158
            ++ +  G+  ++ A       G+++  G + ++ + +  + E++   + RIG T R   
Sbjct: 282 ALEGFKNGRYEVMVA-TDIAARGIDV-AGVSHVINYDVPENPEDY---VHRIGRTGRAMA 336

Query: 159 AG 160
            G
Sbjct: 337 VG 338


>gi|218245438|ref|YP_002370809.1| type III restriction protein res subunit [Cyanothece sp. PCC 8801]
 gi|218165916|gb|ACK64653.1| type III restriction protein res subunit [Cyanothece sp. PCC 8801]
          Length = 509

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPC 99
           E K      D K++ L  +I + +   I++  + N+ + R+ + F       +T+ K+  
Sbjct: 312 EAKEIASGTDGKLRVLTDLICEHHNDSILIFTNDNATVYRISQDFLIPAITHQTIVKERH 371

Query: 100 TI-QEWNEGKIPLLFAHPASCGHGLNLQYGGN-----ILVFFSLWWDLEEHQQMIERIGV 153
            I  ++ EG    L        H LN   G +     + +  S      E+ Q   R+G 
Sbjct: 372 DILTKFREGIYKTLVTS-----HVLN--EGVDVPDVKVAIILSGTGSAREYIQ---RLGR 421

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++  G  +   +Y ++A++T +E   QR R +   
Sbjct: 422 ILRKGTGHNKLAILYEVVAEDTTEERTSQRRRGEELT 458


>gi|212695553|ref|ZP_03303681.1| hypothetical protein ANHYDRO_00070 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677431|gb|EEB37038.1| hypothetical protein ANHYDRO_00070 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 801

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 275 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 330

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + +NT D  + Q +  K      ++ +
Sbjct: 331 NIFRYVTENTFDSYLWQTIENKQKFISQIMTS 362


>gi|331251718|ref|XP_003338449.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309317439|gb|EFP94030.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 78

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+    +Q I+R+      + G +  V V      N+I+  + Q  R K+ + 
Sbjct: 3   PTWNPAVEEQAIDRL-----YRIGQQEKVHVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|326204934|ref|ZP_08194787.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
 gi|325984983|gb|EGD45826.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
          Length = 1125

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  T + +    +  N+    ++     S G G N Q   ++L    L WD    +Q I
Sbjct: 618 KKMSTEELELNVFRFQNDTSCFIMLCD-ESGGEGRNFQCADSVL-HIDLPWDANAIEQRI 675

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            R+    +      ++V +Y     +TI+E + +
Sbjct: 676 GRLDRIGRDLNRDVKSVVIY---THDTIEEQLFR 706


>gi|193297458|gb|ACF17793.1| putative helicase/DNA methylase [Helicobacter pylori]
          Length = 2609

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2097 DAKTEEQKQDLFKKINRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2156

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2157 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2209


>gi|188527680|ref|YP_001910367.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
 gi|188143920|gb|ACD48337.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
          Length = 2803

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 2334 DAKTEEQKQDLFKKINRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 2393

Query: 150  RIGVTRQRQAGFKRA-----VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R    RQ     +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2394 R--GIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2446


>gi|56476802|ref|YP_158391.1| hypothetical protein ebA2431 [Aromatoleum aromaticum EbN1]
 gi|56312845|emb|CAI07490.1| conserved plasmid related protein [Aromatoleum aromaticum EbN1]
          Length = 757

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 693 GQKQPVRVIYL 703


>gi|227484741|ref|ZP_03915057.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
 gi|227237263|gb|EEI87278.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    ++K ++    EK   L  ++++      +V          +     ++ FP
Sbjct: 432 IVGGACTDVDQKFYQVTRFEKRPKLVELLKEEGGDKTLVFVEMKRTADFIAAYLSEQNFP 491

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  G++ +L A  A    GL+++   + +V + L   ++E+
Sbjct: 492 TTSIHGDRMQREREEALADFKSGQMTILVA-TAVAARGLDIKNVAH-VVNYDLPKSIDEY 549

Query: 145 QQMIERIGVTRQR 157
              I R G    R
Sbjct: 550 VHRIGRTGRVGNR 562


>gi|147858109|emb|CAN81394.1| hypothetical protein VITISV_043258 [Vitis vinifera]
          Length = 203

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCT 100
              K++ L+ ++ K       +++   F   L  L         Q     G+    +   
Sbjct: 105 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 164

Query: 101 -IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            I  +N              + G G+NL     ++++
Sbjct: 165 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 201


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  +++   +   +V          +     Q     
Sbjct: 446 VGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVFVETKRQADFIATFLCQEKVNT 505

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL+++   +I V F L  +++E+ 
Sbjct: 506 TSIHGDREQREREQALGDFRSGKCPVLVA-TSVAARGLDIKDVQHI-VNFDLPNNIDEYV 563

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 564 HRIGRTGRCG 573


>gi|154795688|gb|ABS86814.1| putative helicase/DNA methyltransferase [Helicobacter cetorum]
          Length = 4043

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              ++ ++     +  N G++ +L   PA  G G N+Q     +      W  +E  QM  
Sbjct: 3523 DAKSEEQKQDLFKRVNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEG 3582

Query: 150  ---RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R G    +      ++ +Y    + T D  + Q + TKS   +   NA K
Sbjct: 3583 RGIRQGNLLHQADPENFSMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 3635


>gi|154253841|ref|YP_001414665.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157791|gb|ABS65008.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 759

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  +   EKA    ++    +        RL+    Q               +   
Sbjct: 581 KERELIDVCKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V YL    +     L+ +  K  +   
Sbjct: 695 GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
 gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
          Length = 529

 Score = 43.8 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 341 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 387

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 388 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 446

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 447 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 484


>gi|300813792|ref|ZP_07094099.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300512082|gb|EFK39275.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|325268593|ref|ZP_08135223.1| SNF2 family domain protein [Prevotella multiformis DSM 16608]
 gi|324989121|gb|EGC21074.1| SNF2 family domain protein [Prevotella multiformis DSM 16608]
          Length = 398

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 64/203 (31%), Gaps = 41/203 (20%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKALEVI 62
           + ++E Y +++              + L+  N  ++ +  +  +       +K   ++ +
Sbjct: 229 EKEKEEYINIKE--------LFLDNEMLEYRNNNIFLEMTQKMQHAYCCTADKFTKVDEL 280

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
             K      I+   +       ++ + + + L                           G
Sbjct: 281 FTKIPQKDTIIFCKYIDSRTECERRYKEAKVL--------------------SYQKEAFG 320

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA----QNTIDE 178
           LNLQ+    ++FF   WD     Q   R       + G +     Y +      ++ ID 
Sbjct: 321 LNLQH-YQYMIFFDKIWDYALRMQATRRTF-----RTGQESDCIYYDMTGNVGLEDMIDT 374

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            + +++      +   +  +K E
Sbjct: 375 NIEKKISMTEYFKQKTIEEIKTE 397


>gi|256544755|ref|ZP_05472127.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399644|gb|EEU13249.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 2547

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + +NT D  + Q +  K      ++ +
Sbjct: 2077 NIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|325003374|ref|ZP_08124486.1| helicase domain protein [Pseudonocardia sp. P1]
          Length = 1005

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 45  EKHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAF-------- 88
            + ++   D ++  L   ++              ++V   + + L  + +          
Sbjct: 444 GRSYEHRPDSRLTRLITYLDAVCRPDGKTWTNERVVVFTEYAATLDWITRVLSQHGYRDV 503

Query: 89  ---PQGRTLDKDPCTIQE-WNEG--------KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               QG T   +   I+  +            + +L A   S G G++LQ   + L+ F 
Sbjct: 504 LGVIQGSTSSDEREDIRAAFTSPVTEPPGRSAVRVLLA-TDSAGEGIDLQDHCHRLINFD 562

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-----IDELVLQRLRTK 187
           + ++    +Q I RI      + G +    +Y+    +T      D   ++R+  K
Sbjct: 563 VPFNPSRLEQRIGRID-----RYGQQEVPEIYHFAPDSTSSTYAADMDFMRRIAEK 613


>gi|86609161|ref|YP_477923.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557703|gb|ABD02660.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 964

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELV 180
           G+NLQ     ++ + L W+    +Q   R+    Q+ +     V V     + N +D +V
Sbjct: 547 GINLQEKFTAVIHYDLPWNPNRLEQREGRVDRYGQKAS----RVKVIRFFGRDNPVDGVV 602

Query: 181 LQRLRTKS 188
           L+ L  K+
Sbjct: 603 LEVLLNKA 610


>gi|255656169|ref|ZP_05401578.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 60

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K +V V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 3   QKNSVQVIKLIAKGTIEEKIIKLQESKKELINQFING 39


>gi|242229275|ref|XP_002477702.1| predicted protein [Postia placenta Mad-698-R]
 gi|220722338|gb|EED77099.1| predicted protein [Postia placenta Mad-698-R]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D  +      KS
Sbjct: 193 ANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDKS 247

Query: 189 TIQDLLLNALKK 200
            + +  + + + 
Sbjct: 248 IMHNAFMGSSRA 259


>gi|242309825|ref|ZP_04808980.1| yea [Helicobacter pullorum MIT 98-5489]
 gi|239523826|gb|EEQ63692.1| yea [Helicobacter pullorum MIT 98-5489]
          Length = 812

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPC 99
           +E +        +  LE  +E   +  + V +       R+ K     FP  R    D  
Sbjct: 517 DEDYITNKDKALVAELEKELELGRSCLVYVTFSNLGVADRIVKILETNFPDKRVRFLDSK 576

Query: 100 TIQE----W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +    W  E    +L  +P     GL+L  G   ++F+   +++   +Q   R    
Sbjct: 577 IKADRRDIWIKENPCDILVCNPELVKTGLDL-LGFPTIIFYETGYNVSTLKQASRRAW-- 633

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + G K A  V +L   NT  +  L  +  K    + L
Sbjct: 634 ---RIGQKEACKVKFLTYANTPQQTALALMSRKIKALNSL 670


>gi|254384442|ref|ZP_04999783.1| helicase domain containing protein [Streptomyces sp. Mg1]
 gi|194343328|gb|EDX24294.1| helicase domain containing protein [Streptomyces sp. Mg1]
          Length = 976

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELV 180
           G+NLQ+  + ++ + L W+   H Q   R+    Q++      V V  L    N ID  V
Sbjct: 566 GVNLQHYFDAVLHYDLAWNPTRHDQREGRVDRYGQKR----DEVRVITLYGDDNGIDGKV 621

Query: 181 LQRLRTK 187
           L+ L  K
Sbjct: 622 LEVLIKK 628


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 18/133 (13%)

Query: 36  ANGAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
             GA   D +++  +V    K   L  I++       +V          L     Q    
Sbjct: 455 TCGAC-SDVQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLP 513

Query: 91  ------GRTLDKDPCTIQEWNEGKIPLLFA-HPASCGHGL-NLQYGGNILVFFSLWWDLE 142
                  R   +    ++++  GK  +L A   AS G  + N+Q+    ++ F L   +E
Sbjct: 514 STSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQH----VINFDLPNTIE 569

Query: 143 EHQQMIERIGVTR 155
           ++   I R G   
Sbjct: 570 DYVHRIGRTGRCG 582


>gi|307293031|ref|ZP_07572877.1| helicase domain protein [Sphingobium chlorophenolicum L-1]
 gi|306881097|gb|EFN12313.1| helicase domain protein [Sphingobium chlorophenolicum L-1]
          Length = 1720

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              + N+G+  +L     + G G+N Q     L    + W   + +Q   RI    +RQ  
Sbjct: 1356 FNDLNQGRKRILIGSTPTMGTGVNAQQRLKALHHLDVPWIPSDIEQREGRI----ERQGN 1411

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + +Y      ++D    Q L  K+   ++ ++ 
Sbjct: 1412 QNDEIELYGYATSGSMDATNWQMLERKARFINMAMSG 1448


>gi|193083970|gb|ACF09645.1| ATP dependent RNA helicase [uncultured marine crenarchaeote
           AD1000-56-E4]
          Length = 497

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 26/161 (16%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPC 99
           KI  L  I+ +   + +++   +   +  +QK               A   G   +K   
Sbjct: 335 KIDKLVEIL-RNIESKVLIFSSYRDSVDVIQKKLVSMDIAAEILIGKAGQTGLKQEKQIE 393

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T+Q + +G +            GL++    N+++F+          Q        R+ + 
Sbjct: 394 TVQRFRDG-VTKALVATRVGEEGLDISE-VNLVIFYDNVPSSIRFIQ--------RKGRT 443

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K    +  LIA++TIDE      + K      + + + K
Sbjct: 444 GRKDTGRLVVLIAKDTIDEAYYWIGKRKVKSASNMADKITK 484


>gi|291165181|gb|ADD81195.1| vasa [Thunnus orientalis]
          Length = 192

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 16  VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPT 75

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 76  TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 132

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 133 --VHRIG--RTGRCGNTGRAVSFY 152


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 413 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPT 472

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 473 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 529

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 530 --VHRIG--RTGRCGNTGRAVSFY 549


>gi|237718473|ref|ZP_04548954.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229452180|gb|EEO57971.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 867

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +   + +T  K    I+  NEGKI +LF      G G+N Q     +      W   + Q
Sbjct: 375 RFIQEAKTEKKRKAMIEAMNEGKIRVLFGSTEMLGTGVNAQKRCVAIHHLDAPWRPSDLQ 434

Query: 146 QMIER 150
           Q   R
Sbjct: 435 QRDGR 439


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 428 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPT 487

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 488 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 544

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 545 --VHRIG--RTGRCGNTGRAVSFY 564


>gi|291164964|gb|ADD80993.1| gp102 [Rhodococcus phage ReqiPepy6]
          Length = 542

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 9/154 (5%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQ 102
           +        + +A+  +++  +   +IV Y+FN +L  L+   K  P     + +    +
Sbjct: 392 RRVAYSDQSRREAVIQLLKHNHPR-LIVFYNFNYELEILRTIAKDMPGLEVAEWNGQKHE 450

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G+  L      +     N     + + F+S  +  +  +Q   RI           
Sbjct: 451 QVPTGEHWLYLVQYVAGAEAWNC-VATDAICFYSQTYSYKNFEQAQGRIDRLNT----PF 505

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + +  Y L + + ID  V + L  K +  +  ++
Sbjct: 506 KQLHYYILKSTSQIDLAVSRSLSEKRSFNESEMS 539


>gi|194744679|ref|XP_001954820.1| GF18461 [Drosophila ananassae]
 gi|190627857|gb|EDV43381.1| GF18461 [Drosophila ananassae]
          Length = 1272

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  AN   +++       +  L++               
Sbjct: 1154 PDKETLITDAGKLFVLDTLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1213

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
              +      + ++     I +      + G G+NL     +
Sbjct: 1214 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTV 1254


>gi|254884184|ref|ZP_05256894.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013702|ref|ZP_05285828.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|254836977|gb|EET17286.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1659

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERTRKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    V +Y    + T+D      L+ K  
Sbjct: 1346 QRNGRAIRKGNTVKLWGGNVVDVVIYG--TEKTLDAYKFNLLKNKQM 1390


>gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
 gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
          Length = 523

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 335 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 381

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 382 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 440

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 441 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 478


>gi|242091650|ref|XP_002436315.1| hypothetical protein SORBIDRAFT_10g000300 [Sorghum bicolor]
 gi|241914538|gb|EER87682.1| hypothetical protein SORBIDRAFT_10g000300 [Sorghum bicolor]
          Length = 414

 Score = 43.4 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +   +G  L K    +  +N+      +      +CG  + L     I++ +   W+   
Sbjct: 88  ERVERGLLLQKKQTAMNMFNDKTKGRFIFLIDSRACGSSIKLSSVDAIII-YGSDWNPMN 146

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + ++++ +           V ++ L +  T++E  L   +    +   +LN
Sbjct: 147 DLRALQKVSMES-----QSEPVPIFRLYSSCTVEEKALILAKHDHILDSNILN 194


>gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 507

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 319 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 365

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 366 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 424

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 425 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 462


>gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1]
          Length = 523

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 335 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 381

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 382 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 440

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 441 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 478


>gi|50311213|ref|XP_455630.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644766|emb|CAG98338.1| KLLA0F12166p [Kluyveromyces lactis]
          Length = 1528

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 25/148 (16%)

Query: 54   EKIKALEVII----------EKANAAPIIVAYH----FNSDLARLQKAFPQ--GRTLDKD 97
             K+  +  +I          E     P IV +     F S L+ L  A      R L   
Sbjct: 1326 AKVDQVMKLILYIKQQHLEKEPHKKNPQIVIFSSHSAFLSILSTLLTAHNVTHARPLRNT 1385

Query: 98   --PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +  +  +     L  +  S   GL L    + L+      D     Q I RI   
Sbjct: 1386 KFAKAVDTFRKDPNCTCLLLNVHSQSTGLTLVNARH-LILLEPIMDSSTEAQAISRI--- 1441

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
               + G K   +V+  + +NT++E +++
Sbjct: 1442 --HRIGQKDVTYVWNFMVRNTVEESIMK 1467


>gi|16119916|ref|NP_396621.1| SNF2 family helicase [Agrobacterium tumefaciens str. C58]
 gi|15163586|gb|AAK91062.1| helicase, SNF2 family [Agrobacterium tumefaciens str. C58]
          Length = 1693

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 20   IEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEK----IKALEVIIEKANAAPI-- 71
            ++A N      K   L + A  ++   E      HD K      A ++I        +  
Sbjct: 1254 VDADNDNEADNKLNNLISNAFNIWKATEGSTYLRHDGKSFELTGAAQMIFSDLGTISVEK 1313

Query: 72   ---IVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
                 AY     +L RL          + F +     +    ++    G +  L     +
Sbjct: 1314 TRGFSAYRWIRDELIRLGVPASQIAFMQDFKKSEAKQRLFGDVR---AGSVRFLIGSSET 1370

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G G+N Q     L    + W   + +Q   RI     RQ      V ++    + ++D 
Sbjct: 1371 MGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYATEGSLDA 1426

Query: 179  LVLQRLRTKS 188
             + Q    K+
Sbjct: 1427 TMWQNNERKA 1436


>gi|331250653|ref|XP_003337933.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309316923|gb|EFP93514.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 78

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+    +Q I+R+      + G +  V V      N+I+  + Q  R K+ + 
Sbjct: 3   PTWNPAVEEQAIDRL-----YRIGQQEKVHVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|84498512|ref|ZP_00997282.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84381255|gb|EAP97139.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 545

 Score = 43.4 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTI-QEWNE 106
            D K+  +E ++EK    P +V   +   L     RL      G T   +   +   + +
Sbjct: 393 SDAKLPVVEKLVEKHRGEPTLVIGQYLDQLDELSTRLGAEVITGETSVTERQRLYSAFRD 452

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G I LL          ++L      +     +   +E  Q + R+   +    G  R   
Sbjct: 453 GDISLLVVS-KVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRTAH 507

Query: 167 VYYLIAQNTID 177
            Y ++A++T+D
Sbjct: 508 FYTVVARDTVD 518


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 32/157 (20%)

Query: 55  KIKALEVII----EKANAAPIIVAYHFNSDLARL------------------QKAFPQGR 92
           K++ L+ ++    E+   + IIV  +F      +                  ++   +G 
Sbjct: 346 KLEKLKEVVKKQLEEKPDSRIIVFTNFRDTAEVIVEELKKEGIPVSRFVGQAKRFEKKGM 405

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  +   T++ +  G+I +L A  +    GL++    +++VF+          Q   R G
Sbjct: 406 SQKEQVETLERFRSGEIKVLVA-TSVGEEGLDI-PSTDLVVFYEAVPSEIRAIQRKGRTG 463

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             R+ +      V    LI + T DE        K  
Sbjct: 464 RAREGRI-----VV---LITKGTRDEAYYWASMRKEK 492


>gi|154174339|ref|YP_001408188.1| putative DNA methylase [Campylobacter curvus 525.92]
 gi|112802351|gb|EAT99695.1| putative DNA methylase [Campylobacter curvus 525.92]
          Length = 766

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 13/140 (9%)

Query: 53  DEKIKALEVIIEKANAAPII-VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           D+K    E + EK     I      F  D            T D       + N G++ +
Sbjct: 184 DDKFSVYEDMKEKLIKQGIPENEIAFIHDYD----------TADAKGELFAKVNSGEVRI 233

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYY 169
           +F      G G+N+Q   + L    + W     +Q   R+     +         V VY 
Sbjct: 234 VFGSTQKIGTGVNIQERVSALHNIDVPWTPAALEQRQGRVERQGNKLLDEKQNFKVKVYD 293

Query: 170 LIAQNTIDELVLQRLRTKST 189
              +  +D +  +++  K T
Sbjct: 294 YATKKMLDAMNWEKIEQKRT 313


>gi|328724641|ref|XP_003248208.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 88

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLNL      + F     +  +  Q I  I      + G  +  FV+  I +++I+E
Sbjct: 6   GSKGLNLTE-ATRIFFMEPIINKADEHQAIGTI-----YRLGQTKPTFVHNFIIRDSIEE 59

Query: 179 LV 180
            +
Sbjct: 60  NI 61


>gi|291549550|emb|CBL25812.1| hypothetical protein RTO_11420 [Ruminococcus torques L2-14]
          Length = 756

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++  +    A  G G N+Q     L    + W   + +Q   RI     RQ    + +
Sbjct: 381 SGQVRFMIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQREGRII----RQGNHNKKI 436

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + ++T D  + Q +  K      ++ +
Sbjct: 437 HIFRYVTESTFDSYMWQLIENKQKFISQIMTS 468


>gi|159029663|emb|CAO87741.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 500

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K        K++ L  +I +     I++  + N+ + R+ ++F       + P     
Sbjct: 311 ESKEISSGTQGKLRVLAELICEHYPEAILIFTNDNATVYRISESFLIPAITHQTPVKERH 370

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  + +G+  +L         G+++     I +  S      E+ Q + R+    Q  
Sbjct: 371 EILTRFRQGEYKILVTS-HVLNEGVDVPE-ARIAIILSGTGSTREYIQRLGRVLRKGQ-- 426

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +   +Y +IA+NT +E   QR R 
Sbjct: 427 -QEDKRAILYEVIAENTTEEKTSQRRRG 453


>gi|311104291|ref|YP_003977144.1| helicase [Achromobacter xylosoxidans A8]
 gi|310758980|gb|ADP14429.1| helicase conserved C-terminal domain protein [Achromobacter
           xylosoxidans A8]
          Length = 759

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICKAEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K  V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKLPVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|298707958|emb|CBJ30329.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 397

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 27/131 (20%)

Query: 70  PIIVAYHFNSDLARL-------QKAFPQGRTLDKDPCTIQEW-------------NEGKI 109
             IV   F   L  +          FP+     +    + E+              + + 
Sbjct: 33  KAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAKELERFRTDPEC 92

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L        HGL+L +  + +      WD     Q++ R       + G K +V V  
Sbjct: 93  FVLLLG-KRGAHGLDLSFVTH-MFLMDQIWDRSLETQVVAR-----ANRMGAKGSVSVVQ 145

Query: 170 LIAQNTIDELV 180
           LI ++T+++ +
Sbjct: 146 LIMKDTMEQEL 156


>gi|154492435|ref|ZP_02032061.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
 gi|154087660|gb|EDN86705.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
          Length = 835

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           D  K  ++   EKI  +  II   +      ++ +   ++   L KA P  + +      
Sbjct: 288 DAAKERRDNMQEKIARVVEIINRPENKDDHFLLWHDLEAERLELCKAIPGCKAVYGSQDD 347

Query: 101 ------IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I ++ +G++  L A P   G GLN QY  +  + F + +   +  Q I RI   
Sbjct: 348 EEADKVISDFKDGRLKYLAAKPEMLGEGLNFQYHCHKAIMF-IDYRFNDKFQAIARI--- 403

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +   +  V +Y + A++  +  + +    K      ++  + +   H
Sbjct: 404 --YRFMQQHPVDLYLVYAES--EGEIFKSFMQKWAQHREMVANMTEIVRH 449


>gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2]
          Length = 523

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 335 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 381

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 382 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 440

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 441 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 478


>gi|24214829|ref|NP_712310.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
 gi|45657657|ref|YP_001743.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24195842|gb|AAN49328.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
 gi|45600897|gb|AAS70380.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 569

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGK 108
           EK+KA+ +I++K + + ++V   + + L  + K F       K P   ++     +  GK
Sbjct: 405 EKMKAIGLIMKKHSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFRSGK 464

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I  L          ++L      +     +   +E  Q + RI   +    G       Y
Sbjct: 465 IKSLVVS-KVANFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFY 519

Query: 169 YLIAQNTIDEL 179
            LI+++T +E 
Sbjct: 520 SLISRDTNEER 530


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 427 VGGACSDVEQTFIQVTKFSKREQLHDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPT 486

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 487 TSIHGDREQREREQALTDFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 543

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 544 --VHRIG--RTGRCGNTGRAVSFY 563


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 25/155 (16%)

Query: 26  ASKTVKCL----QLANGAVYYDEEKHWKEVH--DEKIKA--LEVIIEKANAAPIIVAYHF 77
           A    K L    Q++   V    E   +++   D+K K   L  +++ A+   ++V    
Sbjct: 195 ARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLKTADMESVLVFSRT 254

Query: 78  NSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                ++ +   +     K              ++E+   KI +L A       G+++  
Sbjct: 255 KHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHVLVA-TDIAARGIDVTE 313

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             + ++ + L  + E +   + RIG  R  +AG  
Sbjct: 314 LSH-VINYDLPNEPETY---VHRIG--RTGRAGQS 342


>gi|167841314|ref|ZP_02467998.1| helicase domain protein [Burkholderia thailandensis MSMB43]
          Length = 936

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ   + +V + L W+   H+Q   R+      + G         LI  A N +D  
Sbjct: 536 GINLQENLDAVVHYDLSWNPTRHEQREGRVD-----RFGQTSPRVRATLIYGANNPVDGA 590

Query: 180 VLQRLRTKST 189
           VLQ +  K+ 
Sbjct: 591 VLQVILRKAE 600


>gi|111225674|ref|YP_716468.1| putative ATP-dependent helicase [Frankia alni ACN14a]
 gi|111153206|emb|CAJ64955.1| putative ATP-dependent helicase [Frankia alni ACN14a]
          Length = 938

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 13/153 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               R      + E   +   A+      ++  GA           V  E++  LE + +
Sbjct: 406 DALDRLDELAAKAEEDGSSKLAALVAHLRKIGVGA----GSPTRAVVFSERVDTLEWLRD 461

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
           +      I         +++     Q          I+++   G    L         G+
Sbjct: 462 EVPGRLGIPPSAVAIMHSKVPDNLLQ--------DAIEDFALAGGTTRLLLAGDLASEGI 513

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           NL    + L+ F L W L   QQ   RI    Q
Sbjct: 514 NLHRQCHDLIHFDLPWSLIRIQQRNGRIDRYMQ 546


>gi|261366396|ref|ZP_05979279.1| helicase [Subdoligranulum variabile DSM 15176]
 gi|282571656|gb|EFB77191.1| helicase [Subdoligranulum variabile DSM 15176]
          Length = 650

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q   
Sbjct: 270 EANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQRKG 329

Query: 150 RIGVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RI      + G K   V VY  + + T D  + Q +  K      ++ +
Sbjct: 330 RIE-----RQGNKNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 373


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K  + L  +    ++   N+ +KT          +Y  ++K       +K  AL  +I+
Sbjct: 215 RKLAKGLVNNPVEISVTPRNATAKT------VEQYIYQVDQK-------QKTAALIHLIK 261

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         R+ K               ++       +  +  G++ +L A
Sbjct: 262 QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVA 321

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  G+++    N +V F L    E++   + RIG T R    G 
Sbjct: 322 -TDIAARGIDIDQLPN-VVNFDLPNVPEDY---VHRIGRTGRAGADGQ 364


>gi|86359839|ref|YP_471730.1| DNA methylase [Rhizobium etli CFN 42]
 gi|86283941|gb|ABC93003.1| probable DNA methylase [Rhizobium etli CFN 42]
          Length = 1699

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 20/136 (14%)

Query: 63   IEKANAAPIIVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +EK+       AY     +L RL          + + +     +    ++    GKI  L
Sbjct: 1312 VEKSRG---FSAYRWIRDELVRLGVPASEIAFMQDYKKTEAKQRLFADVR---AGKIRFL 1365

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+N Q     L    + W   + +Q   RI     RQ      V ++    
Sbjct: 1366 IGSSDTMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYAT 1421

Query: 173  QNTIDELVLQRLRTKS 188
            Q ++D  + Q    K+
Sbjct: 1422 QGSLDASMWQNNERKA 1437


>gi|269994446|dbj|BAI50387.1| chromodomain helicase DNA binding protein 2 [Leiolepis reevesii
           rubritaeniata]
          Length = 230

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---------PQGRTLDK-DPC 99
              K+  L+ ++ +       +++       L  L +             G    +    
Sbjct: 129 SSGKLILLDKLLSRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 188

Query: 100 TIQEWN-EGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +  +N EG           + G G+NL    + +V F   W+
Sbjct: 189 ALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWN 230


>gi|213972112|ref|ZP_03400204.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213923150|gb|EEB56753.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 72

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W      Q  +R       + G  R V V   +A +TID+ + Q L  K  +   L+
Sbjct: 2   GLPWTPGLQDQAEDR-----AYRNGQLRMVVVKIPLADDTIDQQLWQMLMDKRALASDLI 56

Query: 196 N 196
           +
Sbjct: 57  D 57


>gi|110347115|ref|YP_665933.1| methyltransferase type 11 [Mesorhizobium sp. BNC1]
 gi|110283226|gb|ABG61286.1| Methyltransferase type 11 [Chelativorans sp. BNC1]
          Length = 1516

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 24/188 (12%)

Query: 20   IEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKI----KALEVIIEKANAAPI-- 71
            ++A N      K   L + A  ++     H    HD K      A ++I        +  
Sbjct: 1072 VDADNDNEADNKLNALISNAFAIWRATAGHPYVRHDGKPFELPGAAQMIFSDLGTISVEK 1131

Query: 72   ---IVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEW---NEGKIPLLFAHPASCG 120
                 AY +  D   ++   P G         K     + +     GK+  L     + G
Sbjct: 1132 SRGFSAYRWIRD-ELIRMGVPAGEIAFMQDYKKSEAKQRLFGDVRAGKVRFLIGSSETMG 1190

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+N Q     L    + W   + +Q   RI     RQ      V ++    + ++D  +
Sbjct: 1191 TGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYATEGSLDATM 1246

Query: 181  LQRLRTKS 188
             Q    K+
Sbjct: 1247 WQNNERKA 1254


>gi|319644055|ref|ZP_07998614.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317384403|gb|EFV65371.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1665

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    V +Y    + T+D      L+ K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDVVIYG--TEKTLDAYKFNLLKNKQM 1390


>gi|254885063|ref|ZP_05257773.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837856|gb|EET18165.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1665

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    V +Y    + T+D      L+ K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDVVIYG--TEKTLDAYKFNLLKNKQM 1390


>gi|298383565|ref|ZP_06993126.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263169|gb|EFI06032.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1657

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1278 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1337

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    V +Y    + T+D      L+ K  
Sbjct: 1338 QRNGRAVRKGNTVKLWGGNVVDVVIYG--TEKTLDAYKFNLLKNKQM 1382


>gi|290956618|ref|YP_003487800.1| helicase SNF2 family protein [Streptomyces scabiei 87.22]
 gi|260646144|emb|CBG69237.1| putative helicase SNF2 family protein [Streptomyces scabiei 87.22]
          Length = 987

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +Q       T ++    ++++     P+ +         G+NL    ++L+ + L W L 
Sbjct: 508 VQVMHGDATTDEEQTDIVEKFGLRDDPVRILFTGDVASEGVNLHQQCHLLIHYDLPWSLI 567

Query: 143 EHQQMIERIGVTRQRQAGFKR 163
             +Q   RI    Q      R
Sbjct: 568 RIEQRNGRIDRYGQEHQPQFR 588


>gi|206601479|gb|EDZ37964.1| superfamily II DNA/RNA helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 957

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   + ++ + L W+   H+Q   R  V R  Q      V +YY  A N +D  VL
Sbjct: 556 GINLQQYFDAVIHYDLSWNPTRHEQREGR--VDRFGQPKSSVRVILYY-GANNPVDGAVL 612

Query: 182 QRLRTKST 189
           + +  K+ 
Sbjct: 613 KVILRKAN 620


>gi|328958690|ref|YP_004376076.1| hypothetical protein CAR_c24050 [Carnobacterium sp. 17-4]
 gi|328675014|gb|AEB31060.1| hypothetical protein CAR_c24050 [Carnobacterium sp. 17-4]
          Length = 814

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 23/173 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
           D  K      +  I+ +  I++K     ++V   F + L ++     Q          G 
Sbjct: 622 DLAKVESPKFNAGIQLVIDIVKKHG--KVVVWGLFVNTLKKITDVLNQQGINTKLIYGGT 679

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +    I  + E   +I +L ++P + G  ++L    +  V+F   ++L    Q  +R
Sbjct: 680 TRQEREDIIHTFKEDTNEIQVLVSNPNTLGESVSLHTIVHDAVYFEYNYNLTFMLQSRDR 739

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
           I     +     R    +YL+        N ID+ +  +L  K       ++ 
Sbjct: 740 IHRLGLQHDQHTR---YHYLMTVTDMKLFNFIDQKIYNKLSEKEDRMKKAIDG 789


>gi|325284295|ref|YP_004256835.1| helicase domain-containing protein [Deinococcus proteolyticus MRP]
 gi|324316359|gb|ADY27472.1| helicase domain protein [Deinococcus proteolyticus MRP]
          Length = 1719

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 54   EKIKALEVIIEKANA----APIIVAYHFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             K      I E+  A      ++VA  + + ++  +     +     +D      +N G 
Sbjct: 1267 HKAIVFMSIGEQGGAFERLKEVLVARGYPAREIEIVSSHTHKSSVERQDLQD--RYNFGD 1324

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + L+       G G NLQYG  +++   + W+ EE +Q   R      RQ    + +   
Sbjct: 1325 LTLILG-TDVLGQGFNLQYGTGMIINADIPWNFEEIRQRTGR----GARQGNTLKKLRNI 1379

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLL 194
            YL+ + + D +    +  K   Q  L
Sbjct: 1380 YLLQRGSFDSMTYTIMSGKKAWQQEL 1405


>gi|160934679|ref|ZP_02082065.1| hypothetical protein CLOLEP_03552 [Clostridium leptum DSM 753]
 gi|156866132|gb|EDO59504.1| hypothetical protein CLOLEP_03552 [Clostridium leptum DSM 753]
          Length = 1014

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 68/164 (41%), Gaps = 21/164 (12%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFN-----SDLARL--QKAFPQGRTLDKDPCTIQE-W 104
           K   +  ++++  A+   +I+   +      S L +L  ++         K P T +E W
Sbjct: 754 KDDDVLELVDRKIASGERVIIYTAWTRLDTQSKLHKLLTERGIRTAVLDQKVPTTKREAW 813

Query: 105 NEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +I     +L  +P     GL+L      L+F+++ ++L   +Q   R       +  
Sbjct: 814 VDKRIQEDTKVLIVNPMLVETGLDL-NAFTTLIFYNVAYNLYIFRQASRRSW-----RIN 867

Query: 161 FKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                V VY    Q+T+ +  L+ + +K +   ++   + +E +
Sbjct: 868 QTAPKVEVYMFYYQDTMQQRALRLMASKLSAATVIEGNVSEEGL 911


>gi|269793671|ref|YP_003313126.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269095856|gb|ACZ20292.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 1028

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 49  KEVHDEKIKALEV----IIEKANA----APIIVAYHFNSDLARLQ-----KAFPQGRTL- 94
           +   D +++AL      I +          +++   ++  L  +      + F   R L 
Sbjct: 472 QSKPDSRLRALVDWLNAICKPDGKNWTNERVVIFTEYSDTLHWIVEVLRSQGFDGTRLLT 531

Query: 95  -------DKDPCTIQEWNEG--KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  ++   T   +N    + P+ +     + G G++LQ   + LV F + ++    
Sbjct: 532 IEGSSPAEERELTRARFNADPSREPVRVLVATDAAGEGIDLQAHCHRLVNFDVPFNPSRL 591

Query: 145 QQMIERIGVTRQRQAGF 161
           +Q I RI    Q QA  
Sbjct: 592 EQRIGRIDRYGQTQAPQ 608


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score = 43.0 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 40/201 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+ + T          VY  ++         K  AL  +I+
Sbjct: 193 RELAKGLVNNPVEISVTPRNATANT------VTQCVYPVDK-------TRKSMALIELIK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
             +   ++V         RL K+                       + ++  G + ++ A
Sbjct: 240 TNDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK------RAVFV 167
                  G+++      +V F L    E++   + RIG T R    G          V +
Sbjct: 300 -TDIAARGIDI-DQLPFVVNFDLPNVPEDY---VHRIGRTGRAGSTGQAVSLVGLEEVKL 354

Query: 168 YYLIAQNTIDELVLQRLRTKS 188
            +      I+ L+ + +  K 
Sbjct: 355 LH-----DIERLINRVIERKQ 370


>gi|329940571|ref|ZP_08289852.1| helicase SNF2 family protein [Streptomyces griseoaurantiacus M045]
 gi|329300632|gb|EGG44529.1| helicase SNF2 family protein [Streptomyces griseoaurantiacus M045]
          Length = 1067

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 28/156 (17%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAF-- 88
           A   +  + ++   D +++ L   +               ++V   + + L  +++    
Sbjct: 502 ASLIEWGRRYEHKPDSRLEELLTFLAAVCRPDGTHWTNERVVVFTEYAATLEWIERVLRQ 561

Query: 89  ---------PQGRTLDKDPCTIQ-EWNE--GKIPL-LFAHPASCGHGLNLQYGGNILVFF 135
                     QG T  ++   I+  + E   K P+ +     S G G++LQ   + LV F
Sbjct: 562 RGYNDVLEVIQGSTPTEEREKIRARFTESPDKHPVRVLLATDSAGEGIDLQTHCHRLVNF 621

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            + ++    +Q I RI      + G  +   +++ +
Sbjct: 622 DIPFNPSRLEQRIGRID-----RYGQTKHPEIFHFV 652


>gi|195999480|ref|XP_002109608.1| hypothetical protein TRIADDRAFT_53804 [Trichoplax adhaerens]
 gi|190587732|gb|EDV27774.1| hypothetical protein TRIADDRAFT_53804 [Trichoplax adhaerens]
          Length = 1383

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            IP+L     S  +GLNL    + ++      +  +  Q I R+      + G  + 
Sbjct: 1310 IPVLLLPLKSGANGLNLIEATH-VILIEPVLNPAQELQAIGRV-----HRIGQTKK 1359


>gi|302759218|ref|XP_002963032.1| hypothetical protein SELMODRAFT_404554 [Selaginella moellendorffii]
 gi|300169893|gb|EFJ36495.1| hypothetical protein SELMODRAFT_404554 [Selaginella moellendorffii]
          Length = 1398

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 70  PIIVAYHFN------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            I+V   +         L   + ++ + +   +   +I E+ +  I  +        +GL
Sbjct: 571 KILVFSTWQVLDLLEHALKSNKLSWVRLKHRRQMGSSILEFKKKNIQAMLL-----PNGL 625

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++      +     Q I R+      + G +    V+  I      E + + 
Sbjct: 626 NLTEAQH-VILVEPLLNPAVEAQAINRV-----HRIGQRPKTLVHRFI------ENIYKM 673

Query: 184 LRTKSTI 190
            + K+ +
Sbjct: 674 SQQKTNL 680


>gi|282601441|ref|ZP_05981716.2| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
            15176]
 gi|282569100|gb|EFB74635.1| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
            15176]
          Length = 2002

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             F  D            T  +      +   G + +L    A  G G N+Q     L   
Sbjct: 1628 QFIHD----------ANTEARKADLFAKVRSGTVRVLMGSTAKMGAGTNVQRKLIALHHL 1677

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + W   + +Q   R+     RQ    + V +Y  + + T D    Q +  K 
Sbjct: 1678 DVPWRPSDIEQREGRMV----RQGNENKEVAIYRYVTEATFDAYSWQLIENKQ 1726


>gi|241765453|ref|ZP_04763421.1| helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241364792|gb|EER59776.1| helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 384

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA- 164
           EG + LL    A+   GLNLQ  G  L+   L W+    +Q   RI      + G  R+ 
Sbjct: 233 EGDLKLLLGTDAAS-EGLNLQRLG-TLINIDLPWNPTRLEQRKGRIQ-----RIGQARSE 285

Query: 165 VFVYYLIAQNTIDELVLQRLRTK 187
           +++  L  ++++++ V Q L  +
Sbjct: 286 IWIANLRYRDSVEDRVHQVLADR 308


>gi|119961251|ref|YP_946800.1| ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
 gi|119948110|gb|ABM07021.1| putative ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
          Length = 552

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 10/141 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRT-LDKDPCTIQEWN 105
             + K K +E ++       ++V   +   L  + +       +G T +         + 
Sbjct: 392 TSETKTKLVEELVAVHKGEQLLVIGQYIDQLDEIAERLDAPLIKGETSVKARQKLFDAFR 451

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+I  L          ++L      +     +   +E  Q + R+   +Q      RA 
Sbjct: 452 KGEIHTLVVS-KVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPKQ----DGRAA 506

Query: 166 FVYYLIAQNTIDELVLQRLRT 186
             Y L+A++T+D+    + + 
Sbjct: 507 RFYSLVARDTLDQDFAAKRQR 527


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score = 43.0 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 424 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPT 483

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 484 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 540

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 541 --VHRIG--RTGRCGNTGRAVSFY 560


>gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score = 43.0 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           E+  +     +K K L  +I + +   ++V  +   ++ R+++   +             
Sbjct: 312 EQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVP 371

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K   T++ + EGKI +L A     G G+++  G + ++ F+L  D +++   + RIG 
Sbjct: 372 QHKRIRTLEGFREGKIRVLVA-TDVAGRGIHV-DGISHVINFTLPEDPDDY---VHRIG- 425

Query: 154 TRQRQAGFKRA 164
            R  +AG    
Sbjct: 426 -RTGRAGTSGT 435


>gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 526

 Score = 43.0 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           E+  +     +K K L  +I + +   ++V  +   ++ R+++   +             
Sbjct: 362 EQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVP 421

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K   T++ + EGKI +L A     G G+++  G + ++ F+L  D +++   + RIG 
Sbjct: 422 QHKRIRTLEGFREGKIRVLVA-TDVAGRGIHV-DGISHVINFTLPEDPDDY---VHRIG- 475

Query: 154 TRQRQAGFKRA 164
            R  +AG    
Sbjct: 476 -RTGRAGTSGT 485


>gi|319938578|ref|ZP_08012968.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319806250|gb|EFW02933.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 968

 Score = 43.0 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 95  DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + D    + +N+   G++ +L       G G N Q     L      W   +  Q   RI
Sbjct: 607 NTDARKQELFNKVRRGQVRVLIGSTQKMGAGTNCQDRLIALHDLDCPWRPSDLIQRSGRI 666

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                RQ      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 667 I----RQGNKNPEVDIYRYVTEGTFDAYLYQLVENKQRFISQIMTS 708


>gi|256083898|ref|XP_002578172.1| hypothetical protein [Schistosoma mansoni]
 gi|238663533|emb|CAZ34410.1| expressed protein [Schistosoma mansoni]
          Length = 1108

 Score = 43.0 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 52  HDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQE 103
            D+K +AL  ++      +     I++      +   L    P    G+T  +     ++
Sbjct: 583 DDKKDEALLKLLTRKPFNRLTG-GILIYCATREETEHLASYIPAYHAGQTTSERSRIQKK 641

Query: 104 WNEGKIPLLFAHPASCGHGLN---LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +  GKI +L A   + G GLN   LQ     ++ FSL    E + Q I R+G  +Q
Sbjct: 642 FMSGKIRVLIA-TCAFGMGLNKSDLQA----VIHFSLTKSFENYVQEIGRVGRQQQ 692


>gi|167851584|ref|ZP_02477092.1| helicase domain protein [Burkholderia pseudomallei B7210]
          Length = 763

 Score = 43.0 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K + L  I   EKA    ++V   +        RL+    Q               +   
Sbjct: 586 KERELVDICRQEKAANRKVLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAARRED 645

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 646 WIAEQLDRGIDVLITNPDLVKTGLDLLEFP-TIVFMQSGFNVYTLQQAARRSW-----RI 699

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K+ V V YL   NT     L  +  K T+   
Sbjct: 700 GQKQPVKVIYLGYANTSQMTCLSLMAKKITVSQS 733


>gi|298251768|ref|ZP_06975571.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297546360|gb|EFH80228.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 1065

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 93  TLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           T D++        +     + +L A  A+   G++LQ   + L+ + + W+    +Q   
Sbjct: 571 TKDREEVKAAFQADPDDASVRILLATDAAS-EGIDLQNHCSRLIHYEIPWNPNRLEQRNG 629

Query: 150 RIGVTRQRQAGFKRAVFVYYLIA 172
           R+    QR       V +Y+ ++
Sbjct: 630 RVDRHGQRAPQ----VDIYHFVS 648


>gi|241662280|ref|YP_002980640.1| DEAD-like helicase [Ralstonia pickettii 12D]
 gi|240864307|gb|ACS61968.1| DEAD-like helicase [Ralstonia pickettii 12D]
          Length = 760

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 582 KERELIEICKQEKAAGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 641

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 642 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 695

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 696 GQKQPVRVIYL 706


>gi|1932921|gb|AAB51700.1| putative helicase [Arabidopsis thaliana]
          Length = 117

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            VF Y L+A+ TI+E + +R  TK  +   +++   ++ +H
Sbjct: 1   PVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD---RQQVH 38


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 420 VGGACSDVEQTFVQVTKFSKREQLLDLLKTTGMERTMVFVETKRQADFIATYLCQEKVPT 479

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 480 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEYV 537

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 538 HRIGRTGRCG 547


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    E+  +K    +K   L  I+ +     ++V          L     ++ FP
Sbjct: 385 IVGGACSDVEQIFYKVSKFDKRAKLTEILREEGGKKVLVFVETKRIADFLAAFLCEQKFP 444

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  G++ +L A  A    GL+++   + ++ + L   ++E+
Sbjct: 445 TTSIHGDRLQSQREEALYDFKSGRMGILVA-TAVAARGLDIKNVAH-VINYDLPKSIDEY 502

Query: 145 QQMIERIGVTRQR 157
              I R G    R
Sbjct: 503 VHRIGRTGRVGNR 515


>gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
 gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
          Length = 397

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS TV             E+  +     +K K L  ++ + 
Sbjct: 209 LAKQWTVDPAIVEIEPENVASDTV-------------EQHVYAVAGSDKYKLLYNLVAQN 255

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 256 NWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVA-T 314

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 315 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 352


>gi|238918645|ref|YP_002932159.1| ATP-dependent helicase HepA [Edwardsiella ictaluri 93-146]
 gi|238868213|gb|ACR67924.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 950

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE ++ +       V +   S + R           D+         EG   LL +   S
Sbjct: 501 LEQLLREREGIRAAVFHQGMSLIER-----------DRAAAYFASQEEGAQVLLCSEIGS 549

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G   N Q+  N LV F L ++ +  +Q I R+      + G  R + +Y    + T
Sbjct: 550 EGR--NFQF-ANHLVMFDLPFNPDLLEQRIGRLD-----RIGQARDIQIYVPCLEGT 598


>gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 476

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           E+  +     +K K L  +I + +   ++V  +   ++ R+++   +             
Sbjct: 312 EQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVP 371

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K   T++ + EGKI +L A     G G+++  G + ++ F+L  D +++   + RIG 
Sbjct: 372 QHKRIRTLEGFREGKIRVLVA-TDVAGRGIHV-DGISHVINFTLPEDPDDY---VHRIG- 425

Query: 154 TRQRQAGFKRA 164
            R  +AG    
Sbjct: 426 -RTGRAGTSGT 435


>gi|330831287|ref|YP_004394239.1| RNA polymerase-associated protein rapA [Aeromonas veronii B565]
 gi|328806423|gb|AEB51622.1| RNA polymerase-associated protein rapA [Aeromonas veronii B565]
          Length = 927

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 28/200 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +++   +G+N        +    L+L   A    ++            ALE  +     
Sbjct: 431 EKIFQQFEGDNATWTQFDPRVGWLLELLLSA--RQQKVLVICSEAATAIALEEALRTREG 488

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               V +   S L R           DK         EG   +L         G N Q+ 
Sbjct: 489 IRGAVFHEGMSILER-----------DKASAYF-AQQEGGAQVLLCS-EIGSEGRNFQFA 535

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV-------L 181
            + LV F L  + +  +Q I R+      + G +  V ++    + T    +       L
Sbjct: 536 SH-LVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPYLEGTAQRALQLWYHDGL 589

Query: 182 QRLRTKSTIQDLLLNALKKE 201
                       +  A++ E
Sbjct: 590 DAFEQTCPTARPVFEAVRDE 609


>gi|255263853|ref|ZP_05343195.1| helicase domain protein, putative [Thalassiobium sp. R2A62]
 gi|255106188|gb|EET48862.1| helicase domain protein, putative [Thalassiobium sp. R2A62]
          Length = 927

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR--------AVFVYYLIAQ 173
           GLNL      +VFF+L W      Q+I R+   R R  G K          + ++ ++  
Sbjct: 433 GLNLHNFAADMVFFNLPWQAARIDQLIGRL--DRLRSGGLKSYLDDRSVGTIGIWRMVVV 490

Query: 174 NTIDELVLQRLR 185
            + DE VL+ L 
Sbjct: 491 GSADERVLEALD 502


>gi|303280441|ref|XP_003059513.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459349|gb|EEH56645.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 939

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T  +    +  +  +  + +L     +   GL+L +   + V   L  +    QQ++ 
Sbjct: 511 GMTRAQRDAALAAFRGDPDVAVLLLD-RAAAEGLDLSFASVVFVMEPLD-NTALEQQVVS 568

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           R       + G +RAV V  L  + T +E +L     
Sbjct: 569 R-----AHRMGQRRAVKVEVLAMRETAEETLLDVQAE 600


>gi|255725830|ref|XP_002547841.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240133765|gb|EER33320.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 1138

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             + ++K   LAN  +Y +++   K +     ++    L  ++E  +   I+ A +F S +
Sbjct: 953  GTSSIKLTYLANN-LYENQKNKIKSIVFFEFEDSAYYLTELLEIIDVKYILYA-NFISPI 1010

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R  K        D +         G I +L  + A   HGLN+    + + F +     
Sbjct: 1011 ER-SKNLKDFSNYDNEK-------NGGI-VLIMNIAHSSHGLNI-IAASCIFFINPVKKE 1060

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
                Q I+R       + G  + V +   +  + +DE
Sbjct: 1061 SIEAQAIKR-----AHRIGQDKEVTI-KTLTLDHVDE 1091


>gi|119720665|ref|YP_921160.1| type III restriction enzyme, res subunit [Thermofilum pendens Hrk
           5]
 gi|119525785|gb|ABL79157.1| DNA repair helicase RAD25 [Thermofilum pendens Hrk 5]
          Length = 451

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 27/187 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             F+R     L  ++ EA  +     +  ++A  A               K++ LE ++ 
Sbjct: 281 RDFER--LAALSVKDPEAREALLAWYRARRIALHA-------------SSKMEVLEELLA 325

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGKIPLLFAHPASC 119
           +     +++       + R+   F       + P   +      + +G +  +       
Sbjct: 326 RHRGDKVLIFAEHGDVVRRISSRFLVPEITYRTPEEERRAVMSAFRKGLVRAIVTS-KVL 384

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+++    N+ V  S      E  Q + R+   R+     KRAV VY ++   T +  
Sbjct: 385 EEGVDVPD-ANVAVILSGTASRREFVQRLGRVLRPREG----KRAV-VYEVVTSGTKEVE 438

Query: 180 VLQRLRT 186
           + ++ R 
Sbjct: 439 ISRKRRK 445


>gi|300711855|ref|YP_003737669.1| DNA repair protein Rad25 [Halalkalicoccus jeotgali B3]
 gi|299125538|gb|ADJ15877.1| DNA repair protein Rad25 [Halalkalicoccus jeotgali B3]
          Length = 454

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----PCT 100
           +      + K++ L  I+E+ +   IIV    N  + RL + F       +         
Sbjct: 317 REIVSNAERKVEQLGAILERHHGERIIVFTAHNDLVYRLSERFLIPAITHRTGTKERREV 376

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  + EG    + A       G+++      +V         E  Q + RI      + G
Sbjct: 377 LDRFREGTYSRVVAS-NVLDEGVDVPDASVAVVLSGSG-SEREFTQRLGRIL-----RPG 429

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLR 185
             +   +Y L++++T +E V  R R
Sbjct: 430 EGKRALLYELVSEDTAEENVAARRR 454


>gi|209881267|ref|XP_002142072.1| helicase  [Cryptosporidium muris RN66]
 gi|209557678|gb|EEA07723.1| helicase conserved C-terminal domain-containing protein
            [Cryptosporidium muris RN66]
          Length = 1691

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 14/125 (11%)

Query: 66   ANAAPIIVAYHFNSDLARLQKA-------FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPA 117
                 II+   F   L  L  A       F +      D   ++++ +     +L  +  
Sbjct: 1542 NEDDKIILFSDFMEALDLLCAALSINNVSFKKYNGGKNDYHILRDFIKFPNNRVLICNTL 1601

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+ +    N ++F        +  Q I RI      + G  +   ++  I +++I+
Sbjct: 1602 NVGKGVTMSV-ANHIIFVDPLLHEADELQAIGRIV-----RMGQVKTPHIWRFIIKDSIE 1655

Query: 178  ELVLQ 182
            +++++
Sbjct: 1656 QVLIE 1660


>gi|289424569|ref|ZP_06426352.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289155266|gb|EFD03948.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
          Length = 694

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 487 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 543

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 544 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 603

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 604 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 657

Query: 174 NTID 177
           +T+D
Sbjct: 658 DTVD 661


>gi|50841956|ref|YP_055183.1| superfamily II DNA/RNA helicase [Propionibacterium acnes KPA171202]
 gi|50839558|gb|AAT82225.1| DNA or RNA helicase of superfamily II [Propionibacterium acnes
           KPA171202]
          Length = 694

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 487 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 543

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 544 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 603

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 604 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 657

Query: 174 NTID 177
           +T+D
Sbjct: 658 DTVD 661


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
           ++K++ L  +IE+      IV  +      +L                     K    ++
Sbjct: 241 EDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++  G+I +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTSGEIDVLVA-TDVAARGLHISDVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|295701500|ref|YP_003610501.1| helicase [Burkholderia sp. CCGE1002]
 gi|295441823|gb|ADG20990.1| helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R  DKD    + +  G+   L +  AS   G NL    + ++F+   W      Q + R 
Sbjct: 908  RVADKD----RRFITGRATGLLSTKASGRAGYNLPN-ADYVLFYDRSWTWRIEYQAMRR- 961

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G    V  ++L    +IDE   Q +  K       L+
Sbjct: 962  -ALRWNRKGMLN-VEYFHL--PGSIDEYQAQMVAHKRDSMQAGLD 1002


>gi|332158723|ref|YP_004424002.1| hypothetical protein PNA2_1083 [Pyrococcus sp. NA2]
 gi|331034186|gb|AEC51998.1| hypothetical protein PNA2_1083 [Pyrococcus sp. NA2]
          Length = 449

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKD 97
           +  +        KI+ L  I+E+     II+   +N  +  + + F            + 
Sbjct: 300 EMSRKIALGSRGKIEELRRILERHRGEKIIIFTRYNDLVYEISRRFLIPAITHKTDKKER 359

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++  GK             G+++    ++ V  S      E  Q + RI     R
Sbjct: 360 NEILKKFRAGKYR-AVVSSQVLDEGIDVPD-ASVGVIISGTGSPRELVQRLGRIL----R 413

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            A  K    +Y LI   T +  +  R           ++ LKK
Sbjct: 414 PAPGKEKAILYELITSGTSEVKIASRR----------MDGLKK 446


>gi|260101488|ref|ZP_05751725.1| SNF2/helicase domain protein [Lactobacillus helveticus DSM 20075]
 gi|260084702|gb|EEW68822.1| SNF2/helicase domain protein [Lactobacillus helveticus DSM 20075]
          Length = 57

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K  V +Y ++ +N+I+E ++     K+ +  ++L+
Sbjct: 2   GQKHTVKIYKMVTRNSIEEKIISLQHKKADLAKIILD 38


>gi|119776263|ref|YP_929003.1| ATP-dependent helicase HepA [Shewanella amazonensis SB2B]
 gi|189029427|sp|A1SAC7|RAPA_SHEAM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|119768763|gb|ABM01334.1| RNA polymerase-associated protein HepA [Shewanella amazonensis
           SB2B]
          Length = 967

 Score = 43.0 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 20/152 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKD 97
           D+        D ++  L   ++   +  ++V          L++A       Q     + 
Sbjct: 479 DDNNASWWKFDPRVDWLIDFLKSHRSKKVLVIASRAETALALEEALRTREGIQATVFHEG 538

Query: 98  PCTIQE--------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              I+           EG    L         G N Q+  + LV F L  + +  +Q I 
Sbjct: 539 MSIIERDKAGAYFAQEEGGAQALICS-EIGSEGRNFQF-ASQLVLFDLPLNPDLLEQRIG 596

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           R+      + G +  V ++    ++T  E ++
Sbjct: 597 RLD-----RIGQRHDVQIHLPFLKHTAQEQLM 623


>gi|171911735|ref|ZP_02927205.1| ATP-dependent helicase HepA [Verrucomicrobium spinosum DSM 4136]
          Length = 921

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-- 84
           ++  K    A+G+   +E          K+K L   +++ + A +++       +  +  
Sbjct: 424 AELHKLTVKASGSD-GEESDEADLGLIAKVKWLATKLKELDPAKVLLICKTKHLVEEIHT 482

Query: 85  ---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                       F +G T+ +       + E     +         G N Q+  + LV F
Sbjct: 483 LLLHELNVNVALFHEGLTMLQRDRNAAYFAEEDGARVLICSEIGSEGRNFQF-AHHLVLF 541

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            L  + E  +Q I R+      + G    + ++      T  E++ +
Sbjct: 542 DLPENPELLEQRIGRLD-----RIGQTDTIHIHVPYVAGTQAEVLAR 583


>gi|296118323|ref|ZP_06836904.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968881|gb|EFG82125.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 543

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLD-KDPCTI 101
                 D K +A+  II+K     +++   +   L     RL      GRT + +     
Sbjct: 387 RISATADAKFEAVREIIDKHAQQQMLIIGGYVEQLEDIAARLDAPLIHGRTSNAEREKLF 446

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+I +L          ++L      +     +   +E  Q + R+   +      
Sbjct: 447 DAFRNGEIQVLVVS-KVANFSIDLPEAAVAIQLSGTFGSRQEEAQRLGRLLRPKA----D 501

Query: 162 KRAVFVYYLIAQNTID 177
                 Y L+ +++ID
Sbjct: 502 GGEATFYTLVTRDSID 517


>gi|324118502|gb|EGC12395.1| DEAH ATP-dependent helicase [Escherichia coli E1167]
          Length = 907

 Score = 42.6 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYY 169
           LL     +   GLNLQ  G  L+   L W+    +Q + RI     ++ G  R  V +  
Sbjct: 755 LLVVATDAACEGLNLQTLG-TLINVDLPWNPSRLEQRLGRI-----KRFGQTRKFVDMLN 808

Query: 170 LIAQNTIDELVLQRLRTK 187
           L+   T DE V   L  +
Sbjct: 809 LVYSETQDEKVYNVLSER 826


>gi|225388674|ref|ZP_03758398.1| hypothetical protein CLOSTASPAR_02410 [Clostridium asparagiforme
           DSM 15981]
 gi|225045272|gb|EEG55518.1| hypothetical protein CLOSTASPAR_02410 [Clostridium asparagiforme
           DSM 15981]
          Length = 657

 Score = 42.6 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 23/199 (11%)

Query: 5   HKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            K  + L+CDL        A    +      + A G   +  +       D      E I
Sbjct: 197 EKLTQLLFCDLSTPKGKTAAKQEKAARTAGDKTAGGTELHALDNLLDVKPDPPFSIYEDI 256

Query: 63  IEKANAAPII-VAYHFNSDLA---RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            +K  A  I      F  D     R ++ F + R              G++ +L      
Sbjct: 257 RDKLIARGIPASQIAFIHDADTDARKKELFSKVR-------------SGQVRVLMGSTQK 303

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+++Q     L      W   + +    RI     RQ    + V +Y  + + T D 
Sbjct: 304 MGAGMDVQDRLVALHDLDCPWRPGDLELRKGRIV----RQGNKNKKVHIYRYVTEGTFDS 359

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 360 YLWQTVENKQKFISQIMTS 378


>gi|56476788|ref|YP_158377.1| SNF2 family helicase [Aromatoleum aromaticum EbN1]
 gi|56312831|emb|CAI07476.1| helicase (Snf2 family) [Aromatoleum aromaticum EbN1]
          Length = 959

 Score = 42.6 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +T D     ++ + E GK+ +      +   G+NLQ+  ++++ + L W+ +  +
Sbjct: 483 RITGSKTADTRAALVEHFKERGKVMIA---TEAGAEGINLQF-CSLVINYDLPWNPQRIE 538

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +      D+ V + L  K  + + +  A
Sbjct: 539 QRIGRC-----HRYGQKFDVVVVNFVDLGNEADKRVYELLSQKFQLFEGVFGA 586


>gi|54022596|ref|YP_116838.1| putative DNA helicase [Nocardia farcinica IFM 10152]
 gi|54014104|dbj|BAD55474.1| putative DNA helicase [Nocardia farcinica IFM 10152]
          Length = 552

 Score = 42.6 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWN 105
               KI  +E I+ K   AP +V   +   +  L  A      QG T +K+   +   + 
Sbjct: 394 TARTKIPVVESILAKHPDAPTLVIGAYLEQIEELGAALDAPVIQGSTKNKEREALFDAFR 453

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+IP+L          ++L      +     +   +E  Q + R+   +    G     
Sbjct: 454 RGEIPVLVVS-KVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK-HDGGQAH-- 509

Query: 166 FVYYLIAQNTID 177
             Y ++A++T+D
Sbjct: 510 -FYSVVARDTLD 520


>gi|159029375|emb|CAO90751.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1109

 Score = 42.6 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 25/135 (18%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDK-------- 96
             W+   DEK++ L  ++++ +    +++   F   ++ L     Q R +DK        
Sbjct: 692 GTWQPETDEKLEKLWQLLQENHPGEKVLIFSQFADTVSYLVTQL-QNRGVDKIAGVTGNS 750

Query: 97  -DPCTI--------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            +P  I             G+   +         GLNLQ    I+V + L W +    Q 
Sbjct: 751 ANPTEIVHRFSPRSNSQQVGEEIRVLVATDILSEGLNLQDCA-IIVNYDLPWAIIRLIQR 809

Query: 148 IERIGVTRQRQAGFK 162
             R+      + G K
Sbjct: 810 AGRVD-----RIGQK 819


>gi|162451515|ref|YP_001613882.1| hypothetical protein sce3243 [Sorangium cellulosum 'So ce 56']
 gi|161162097|emb|CAN93402.1| hypothetical protein sce3243 [Sorangium cellulosum 'So ce 56']
          Length = 1214

 Score = 42.6 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNE--GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLW 138
            R+ + F  G   D      + +N    + P+ +     +   G+NLQ     L    + 
Sbjct: 709 QRIMQ-FHGGMGDDARDEVQRAFNSAPDEHPVRILVATDAAREGVNLQAHCADLFHIDIP 767

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           W+    +Q   RI  T Q        V  +Y +     ++ VL+ +  K +T+Q  L
Sbjct: 768 WNPARMEQRNGRIDRTLQPAP----EVRCHYFVYPQRSEDQVLETVVRKIATVQREL 820


>gi|323455802|gb|EGB11670.1| hypothetical protein AURANDRAFT_9232 [Aureococcus anophagefferens]
          Length = 63

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL L +  N  V            Q   RI      + G  +A  V  LI  +T++E
Sbjct: 1   GAAGLTLTH-ANTAVILEPSLTPGIEAQAAGRIS-----RIGQTKAAKVIRLIVADTVEE 54

Query: 179 LVLQRLRTK 187
            +L+    +
Sbjct: 55  KILEWQARR 63


>gi|311977987|ref|YP_003987107.1| putative helicase [Acanthamoeba polyphaga mimivirus]
 gi|82050793|sp|Q5UP58|YR592_MIMIV RecName: Full=Putative helicase R592
 gi|55417205|gb|AAV50855.1| unknown [Acanthamoeba polyphaga mimivirus]
 gi|308204924|gb|ADO18725.1| putative helicase [Acanthamoeba polyphaga mimivirus]
          Length = 841

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI------KALEVI---IEKANAAP-IIVAY 75
           A K+ K  Q+ +     +++K  + V   K         LE +   I K +  P I++  
Sbjct: 493 AIKSNKDYQIISSGGTSNKKKKSEIVGKYKFNEMDKADVLEQVLSYISKNDENPKILIFS 552

Query: 76  HFNSDLARLQKAFPQGRT----LDKDPC----TIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            ++    ++ K   +       L   P      I E+  G   +L  +  + G GLNLQ 
Sbjct: 553 DYSQTFEKITKNIAKANLQYAYLSGTPAHITNLITEFENGITNILMLNSQNFGSGLNLQ- 611

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             N L+ +      E   Q+I R      ++ G K  + V +++  N
Sbjct: 612 SANYLILY-HRMLPELETQVIGR-----AQRFGRKNNLRVIFMVNDN 652


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            D+K + LE ++ + +   ++V         ++ +               R+ ++    +
Sbjct: 224 ADQKFELLEALLARTDFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEAL 283

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  GK  ++ A       G+++  G + ++ + +    E++   + RIG T + QA
Sbjct: 284 AGFKSGKYEIMVA-TDIAARGIDV-AGVSHVINYDVPEKPEDY---VHRIGRTGRAQA 336


>gi|117617895|ref|YP_855406.1| ATP-dependent helicase HepA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|189029408|sp|A0KGL5|RAPA_AERHH RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|117559302|gb|ABK36250.1| RNA polymerase associated protein RapA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 955

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE  +         V +   S L R           DK         EG   +L     
Sbjct: 506 ALEEALRTREGIRGAVFHEGMSILER-----------DKASAYF-AQQEGGAQVLLCS-E 552

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G N Q+  + LV F L  + +  +Q I R+      + G +  V ++    + T
Sbjct: 553 IGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPYLEGT 604


>gi|291165072|gb|ADD81100.1| gp102 [Rhodococcus phage ReqiPoco6]
          Length = 541

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--PCTIQE 103
           +     H  + +A+  +++  +   +IV Y+FN +L  L       RT+ KD     + E
Sbjct: 391 RRVAYSHQSRREAVIQLLKHNHPR-LIVFYNFNYELEIL-------RTIAKDVPGLQVAE 442

Query: 104 WN--------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           WN         G+  L      +     N     + + F+S  +  +  +Q   RI    
Sbjct: 443 WNGHKHEPVPTGEHWLYLVQYVAGAEAWNC-VATDAICFYSQTYSYKNFEQAQGRIDRLN 501

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +        Y L + + ID  V + L  K +  +  ++
Sbjct: 502 TPFSQLH----YYILKSTSPIDLAVSRSLSQKRSFNESEMS 538


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 13/129 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D E+H  +V    K + L  I+        +V          +     Q      
Sbjct: 186 GGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFVEQKRQADFIASYLSQSEFPTT 245

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    ++++  G  P+L A  +    GL++  G N ++ F +   ++E+  
Sbjct: 246 SIHGDREQREREEALRDFKNGTAPILVA-TSVAARGLDI-PGVNHVINFDMPQSIDEYVH 303

Query: 147 MIERIGVTR 155
            I R G   
Sbjct: 304 RIGRTGRCG 312


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score = 42.6 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 13/129 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D E+H  +V    K + L  I+        +V          +     Q      
Sbjct: 180 GGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFVEQKRQADFIASYLSQSEFPTT 239

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    ++++  G  P+L A  +    GL++  G N ++ F +   ++E+  
Sbjct: 240 SIHGDREQREREEALRDFKNGTAPILVA-TSVAARGLDI-PGVNHVINFDMPQSIDEYVH 297

Query: 147 MIERIGVTR 155
            I R G   
Sbjct: 298 RIGRTGRCG 306


>gi|6707720|sp|O37319|NTP1_HAEPV RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|2460172|gb|AAB96624.1| nucleoside triphosphatase I [Heliothis armigera entomopoxvirus 'L']
          Length = 646

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 82/205 (40%), Gaps = 20/205 (9%)

Query: 5   HKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            KF+R+ L  D+  E+I  +N         Q +   +   E          K+   E ++
Sbjct: 348 EKFKRDDLKNDILLEDINNYNI------LYQYSCKYI---EACRIILNSRGKVLLFEPLV 398

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGH 121
                   +  Y    ++  ++ +    +T D +      +  N+GK   +     +   
Sbjct: 399 N-FEGIASLKYYFNCFNITYVEYSSKTLKTRDIEISEYNNYENNDGKNIKVCIFSYAGSE 457

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVFVYYLIA----QNT 175
           G++ +   +I++   + W+  E +Q++ R              R V V+++I+    + +
Sbjct: 458 GISFKCVNDIIIL-DMPWNESELKQIMGRSIRLNSHNDLPLENRYVNVHFIISYTNNRKS 516

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +D+ +L  ++ K +  +++ + LK 
Sbjct: 517 VDKEILDIIKDKQSKINVVFDLLKS 541


>gi|170291163|ref|YP_001737979.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175243|gb|ACB08296.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 492

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDK 96
           EK +      KI+ +  I+E+     +++   +      + +   +        G+T  +
Sbjct: 331 EKKYALKAKNKIREVLRIMEEVKDRKVLIFTEYIDQAEEIYRELRKRYKVELMIGKTSGR 390

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                + +  G+I +          G+++      ++           +QM +R+G   +
Sbjct: 391 SE-IFERFKRGEINV-IVTTRVLDEGIDVPDADVAIIVSG----SGSRRQMAQRVGRVVR 444

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              G    V  Y ++ + TI+E + +  R 
Sbjct: 445 GAPGKVADV--YEIVTRGTIEEKLSRVRRR 472


>gi|118103418|ref|XP_424694.2| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           [Gallus gallus]
          Length = 1260

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKETIHV 205
           R R+     AV +Y L+ + +++E +L+R + K  +  L+   ++   K  +H 
Sbjct: 572 RXRRIQTLCAVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 625


>gi|116052629|ref|YP_792944.1| hypothetical protein PA14_59540 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481674|gb|AAP84188.1| plasmid related protein [Pseudomonas aeruginosa PA14]
 gi|115587850|gb|ABJ13865.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 749

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K + L  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 571 KEQVLVDLCFEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARRED 630

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 631 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 684

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 685 GQKHPVRV 692


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 33/170 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKALEVI 62
            +  + L       ++   N+A+ TVK                W      ++K   L  +
Sbjct: 193 RELAKGLVNQPVEISVTPRNAAANTVK---------------QWICPVDKNQKSALLIQL 237

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLL 112
           I++ +   ++V         RL K+  Q                    + ++  G++ +L
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
            A       GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 298 VA-TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 342


>gi|289628782|ref|ZP_06461736.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330870249|gb|EGH04958.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 752

 Score = 42.6 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKALNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    W++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGWNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 23/146 (15%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            D K   +  +I       ++V  +     +RL +   +G          +T  +    +
Sbjct: 247 DDAKRDIVAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAAL 306

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           + +  G+I +L A       GL++      ++ + L ++ E++   + RIG T R   +G
Sbjct: 307 EAFKGGEIDVLVA-TDVAARGLDISDLPC-VINYDLPYNAEDY---VHRIGRTGRAGASG 361

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++F        T DE +L  +  
Sbjct: 362 DAISLFT-------TKDERLLLDIEK 380


>gi|315302958|ref|ZP_07873684.1| SNF2 family protein [Listeria ivanovii FSL F6-596]
 gi|313628672|gb|EFR97079.1| SNF2 family protein [Listeria ivanovii FSL F6-596]
          Length = 157

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E ++        I+   +      L KAFP  +                  
Sbjct: 24  LSSEKFTITESLVNGKEDT-TIIFCKYKRSEEALLKAFPNVK------------------ 64

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ   N +++F   +D  +  Q   RI      + G     + + L
Sbjct: 65  --VTTFAKSSYGLNLQ-AYNQIIYFDKTFDYSQRDQSERRI-----YRTGQVNDCYYHDL 116

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D ++   +  K+     LL  +KKE
Sbjct: 117 SGNVGLDHIIDSNISKKTN----LLQEIKKE 143


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 428 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPT 487

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P++ A  +    GL++    + +V F L  +++E+ 
Sbjct: 488 TSIHGDREQREREQALADFRSGKCPVMVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 544

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 545 --VHRIG--RTGRCGNTGRAVSFY 564


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 428 VGGACSDVEQTFIQVTKFSKREQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPT 487

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P++ A  +    GL++    + +V F L  +++E+ 
Sbjct: 488 TSIHGDREQREREQALADFRSGKCPVMVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY- 544

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 545 --VHRIG--RTGRCGNTGRAVSFY 564


>gi|302885039|ref|XP_003041413.1| hypothetical protein NECHADRAFT_87952 [Nectria haematococca mpVI
           77-13-4]
 gi|256722314|gb|EEU35700.1| hypothetical protein NECHADRAFT_87952 [Nectria haematococca mpVI
           77-13-4]
          Length = 1138

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 18/110 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAH 115
           ALE +  +     I+    F  D A +Q+   +    ++    I++W++      +  A+
Sbjct: 789 ALEYV--RGEGKRIM----FYVDTAWIQQ--DKASHRNR---VIRDWSDPSTDCEIFIAN 837

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 G+N+    +   F     + +  QQ + R+      + G +  V
Sbjct: 838 INITATGVNMHGACSTGAFLCWHLNFQVMQQAMARLN-----RIGQREPV 882


>gi|91791900|ref|YP_561551.1| ATP-dependent helicase HepA [Shewanella denitrificans OS217]
 gi|122968987|sp|Q12RU8|RAPA_SHEDO RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|91713902|gb|ABE53828.1| SNF2-related [Shewanella denitrificans OS217]
          Length = 968

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 19/124 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE  +         V +   S + R           DK      + + G   L+ +   S
Sbjct: 520 LEEALRTREGILATVFHEGMSIIER-----------DKAGAYFAQEDAGAQALICSEIGS 568

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G   N Q+  + LV F L  + +  +Q I R+      + G K  + ++    + T  E
Sbjct: 569 EGR--NFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHLPYLEGTAQE 620

Query: 179 LVLQ 182
            ++Q
Sbjct: 621 RLMQ 624


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 210 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +    + R+ ++  +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            A       GL++  G   +  + L +D E++   + RIG  R  + G +
Sbjct: 312 VA-TDVAARGLHI-DGIKYVYNYDLPFDAEDY---VHRIG--RTARLGEE 354


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 14/157 (8%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
            +L +  +    +       + +    E+++   +  P IV   F    +R      +G 
Sbjct: 363 RKLVSKQLKGSPDSRVIVFTNYR-DTAEIVVNALSEIPEIVPIRFVGQASR---RKDKGL 418

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  +    + ++  G+  +L A  +    GL++    ++++F+          Q      
Sbjct: 419 TQKQQVEVLDKFRAGEYNVLVA-TSVAEEGLDI-PSTDLVLFYEPIPSEIRSIQ------ 470

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             R+ + G +    V  L+ + T DE      ++K  
Sbjct: 471 --RKGRTGRQHKGRVIILVTKGTRDEAYYWSSKSKEK 505


>gi|296157098|ref|ZP_06839934.1| DEAD-like helicase [Burkholderia sp. Ch1-1]
 gi|295892434|gb|EFG72216.1| DEAD-like helicase [Burkholderia sp. Ch1-1]
          Length = 761

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 583 KERDLIDICKQEKAEGRKTLVYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 642

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 643 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 696

Query: 160 GFKRAVFVYYL 170
           G K+ V V YL
Sbjct: 697 GQKQPVKVIYL 707


>gi|124506920|ref|XP_001352057.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23505086|emb|CAD51868.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 728

 Score = 42.6 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 18/128 (14%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQ-------- 90
           +Y D  K      ++K    ++I EK N   I + Y F       + K   +        
Sbjct: 290 IYSDLIK-----DEKKNSVCDIINEKRNKGKIGIIYCFKRNTCDEISKYLREKGIQALSY 344

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T +      Q+W  GK  +L A  A  G G++ +   + ++ ++L   +E + Q  
Sbjct: 345 HAGLTNNTRKRIQQKWISGKTNILVATIA-FGMGIDRKD-VSFIIHYNLPKSIENYYQES 402

Query: 149 ERIGVTRQ 156
            R G +  
Sbjct: 403 GRCGRSGH 410


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------YDEEKHWK--EVHD 53
           +++   L  +      SA+ +    QLA G V               +  K W     H 
Sbjct: 169 KKILAILPAKRQNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHG 228

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQE 103
           +K+  L  +I++ +   ++V         RL K               ++       + +
Sbjct: 229 QKVAVLIELIKQNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALAD 288

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
           +  G + +L A       GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 289 FKSGAVRVLVA-TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGH 342


>gi|58267204|ref|XP_570758.1| DNA repair protein rad16 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57226992|gb|AAW43451.1| DNA repair protein rad16, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 975

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              K++AL   +EK          +V   F S L  +     +            T  + 
Sbjct: 871 SSSKLEALVEELEKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQR 930

Query: 98  PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             TIQ +  N G + +      + G  LNL     + +  S
Sbjct: 931 DATIQHFMKNTG-VTVFLISLKAGGVALNLTEASMVFMMDS 970


>gi|89072358|ref|ZP_01158937.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
           sp. SKA34]
 gi|89051890|gb|EAR57342.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
           sp. SKA34]
          Length = 638

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            DEK+  L+  +      P IV          +           +A+  G   D+     
Sbjct: 211 DDEKLDVLQQQLIAQPNTPSIVYVTLQHTAEEIAATLTSNHIPAQAYHAGMDADRRQHIQ 270

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q++  G+I  + A  A  G G++       ++ F L   +E + Q I R       + G 
Sbjct: 271 QQFMAGEINCIVATIA-FGMGIDKSD-IRQVIHFDLPKSIENYSQEIGR-----AGRDGE 323

Query: 162 KRAVFV 167
                V
Sbjct: 324 NSTCTV 329


>gi|134111579|ref|XP_775324.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257983|gb|EAL20677.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 975

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
              K++AL   +EK          +V   F S L  +     +            T  + 
Sbjct: 871 SSSKLEALVEELEKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQR 930

Query: 98  PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             TIQ +  N G + +      + G  LNL     + +  S
Sbjct: 931 DATIQHFMKNTG-VTVFLISLKAGGVALNLTEASMVFMMDS 970


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 193 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 240 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 300 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 342


>gi|228861220|ref|YP_002854242.1| putative NTPase [Soft-shelled turtle iridovirus]
 gi|194307500|gb|ACF42230.1| putative NTPase [Soft-shelled turtle iridovirus]
          Length = 948

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 99  CTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +Q +N         I LL         GL  +   + ++  +  W+  E  Q I R  
Sbjct: 436 KIVQRFNHEDNVDGAYISLLLGS-RVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSW 493

Query: 153 VTRQR----QAGFKRAVFVYYLIA----QNT---IDELVLQRLRTKST 189
                      G   AV V+ L+A    ++T   ID  +      K  
Sbjct: 494 RAGSHDRLKARGEAVAVTVHRLVAVPRGRDTPRSIDSDMYAVSEVKDK 541


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS---DLAR-LQKAFPQGRTLDKD--- 97
           +++W+     K+ AL  I+E      +I+     +   DLA  L+        L+ D   
Sbjct: 226 QRYWQVTGLHKLDALTRILEVEEFDGMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQ 285

Query: 98  ---PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                TI++   GKI +L A       GL++Q   + +V + + +D E +   + RIG T
Sbjct: 286 ALREKTIEKMKAGKIDILVA-TDVAARGLDIQRMSH-VVNYDIPYDTESY---VHRIGRT 340

Query: 155 -RQRQAGF 161
            R  + G 
Sbjct: 341 GRAGRKGE 348


>gi|49237306|ref|YP_031587.1| putative NTPase [Frog virus 3]
 gi|47060124|gb|AAT09668.1| putative NTPase [Frog virus 3]
          Length = 948

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 99  CTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +Q +N         I LL         GL  +   + ++  +  W+  E  Q I R  
Sbjct: 436 KIVQRFNHEDNVDGAYISLLLGS-RVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSW 493

Query: 153 VTRQR----QAGFKRAVFVYYLIA----QNT---IDELVLQRLRTKST 189
                      G   AV V+ L+A    ++T   ID  +      K  
Sbjct: 494 RAGSHDRLKARGEAVAVTVHRLVAVPRGRDTPRSIDSDMYAVSEVKDK 541


>gi|45686015|ref|YP_003778.1| NTPase [Ambystoma tigrinum virus]
 gi|37722439|gb|AAP33184.1| NTPase [Ambystoma tigrinum stebbensi virus]
          Length = 948

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 99  CTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +Q +N         I LL         GL  +   + ++  +  W+  E  Q I R  
Sbjct: 436 KIVQRFNHEDNVNGAYISLLLGS-RVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSW 493

Query: 153 VTRQR----QAGFKRAVFVYYLIA----QNT---IDELVLQRLRTKST 189
                      G   AV V+ L+A    ++T   ID  +      K  
Sbjct: 494 RAGSHDRLKARGEAVAVTVHRLVAVPRGRDTPRSIDSDMYAVSEVKDK 541


>gi|14091404|gb|AAK53744.1|AF367980_1 P8.141A [Regina ranavirus]
          Length = 791

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 99  CTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +Q +N         I LL         GL  +   + ++  +  W+  E  Q I R  
Sbjct: 436 KIVQRFNHEDNVNGAYISLLLGS-RVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSW 493

Query: 153 VTRQR----QAGFKRAVFVYYLIA----QNT---IDELVLQRLRTKST 189
                      G   AV V+ L+A    ++T   ID  +      K  
Sbjct: 494 RAGSHDRLKARGEAVAVTVHRLVAVPRGRDTPRSIDSDMYAVSEVKDK 541


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQ  +  R    D     + A   A+   K  Q            HW +   +KI  L+ 
Sbjct: 192 KQMEELSRAYLTDPVKVQVAAPGKAA--DKITQ----------GVHWAQDKGDKIDILKA 239

Query: 62  IIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPL 111
            +        +V         RL K          +    ++  +    +  + +GK  +
Sbjct: 240 YLSDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARV 299

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           L A       G+++  G + +  F L    E +   + RIG  R  +AG
Sbjct: 300 LVA-TDVAARGIDI-PGVSHVFNFDLPNVAENY---VHRIG--RTARAG 341


>gi|225375025|ref|ZP_03752246.1| hypothetical protein ROSEINA2194_00648 [Roseburia inulinivorans DSM
            16841]
 gi|225213097|gb|EEG95451.1| hypothetical protein ROSEINA2194_00648 [Roseburia inulinivorans DSM
            16841]
          Length = 1472

 Score = 42.6 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T  K      +   G++ +L    A  G G N+Q     L      W   +  Q   
Sbjct: 1092 DANTEVKKRELFAKVRSGQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPRDLTQRKG 1151

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI    +RQ    + V V   + + T D  + Q +  K      ++ +
Sbjct: 1152 RI----ERQGNQNKLVHVCRYVTEGTFDAYLWQTVENKQKFISQIMTS 1195


>gi|153011948|ref|YP_001373160.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563836|gb|ABS17331.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1702

 Score = 42.6 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 72   IVAY-HFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
              AY     +L RL          + + +     +    ++    G++  L     + G 
Sbjct: 1321 FSAYRWIRDELIRLGVPASEIAYMQDYKKTEAKQRLFGDVR---AGRVRFLLGSSETMGT 1377

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+N Q     L    + W   + +Q   RI     RQ      V ++    + ++D  + 
Sbjct: 1378 GVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEVDIFAYATEGSLDASMW 1433

Query: 182  QRLRTKS 188
            Q    K+
Sbjct: 1434 QNNERKA 1440


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score = 42.6 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 19/122 (15%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQE 103
           EK K L  I+ K     ++V      +  R+ +   +           ++ +     ++ 
Sbjct: 248 EKSKLLISILHKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALEN 307

Query: 104 WNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  GKI ++ A   A+ G  +N      +++ + L    E +   + RIG  R  +AG  
Sbjct: 308 FKSGKIRVMIATDIAARGIDINELP---LVINYDLPDVPETY---VHRIG--RTGRAGNS 359

Query: 163 RA 164
             
Sbjct: 360 GT 361


>gi|331703372|ref|YP_004400059.1| hypothetical protein MLC_3520 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801927|emb|CBW54080.1| Hypothetical protein MLC_3520 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 512

 Score = 42.6 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 23/189 (12%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
                +   A + A+  ++  Q++ G       K +      ++  LE ++        I
Sbjct: 306 LSYPDDKWIAGDDATFWLRTRQISIGF--QGNSKDYYWFDYSRLNKLEQLLTDKID-NYI 362

Query: 73  VAYHFNSDLARLQKAFPQGRTL----DKDPCTI---------QEWNEGKIPLLFAHPASC 119
           + Y+++ +   + K   +        + +   I         ++    K  ++ A+  S 
Sbjct: 363 IFYNYDPEFDEIYKICKKLDYKIDIWNGNKKDITSYLEFLNIKDKPNSKKRVIIANYFSA 422

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G N Q     ++F      L  +   I    + R  + G K  +  Y  +  N +D+ 
Sbjct: 423 STGNNWQEYDKTILF-----SLATYGYHI--QALKRNHRIGTKNTITYYLFLQDNYLDKS 475

Query: 180 VLQRLRTKS 188
           +   ++ + 
Sbjct: 476 MWDSIQKRQ 484


>gi|291541334|emb|CBL14445.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2753

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 14/168 (8%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---PQGRTLD 95
            A   +  + W+E  D K   L    + +          ++    +L        Q R + 
Sbjct: 2329 ACIDNMYRIWEEHADTKATQLI-FCDLSTPKNDGTFNVYDDIREKLIARGVPAEQVRFIH 2387

Query: 96   KDPCTIQEWN------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +     Q+         G++ +L       G G N+Q     +      W   + +Q   
Sbjct: 2388 EATTDAQKKELFGKVRSGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQG 2447

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI    +RQ      V VY  + + T D  + Q + +K      ++ +
Sbjct: 2448 RI----ERQGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2491


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    E+   +     K + L  +++   +   +V          +     Q+ FP
Sbjct: 402 IVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSERTMVFVETKRQADFIATILCQEKFP 461

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  GK  +L A  +    GL++      +V F L  +++E+
Sbjct: 462 TTSIHGDREQWQREQALGDFRSGKCSVLVA-TSVGARGLDIPD-VQFVVNFDLPNNIDEY 519

Query: 145 QQMIERIGVTRQRQAGFK-RAVFVY 168
              + RIG  R  + G   RAV  Y
Sbjct: 520 ---VHRIG--RTGRCGNTGRAVSFY 539


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    E+   +     K + L  +++   +   +V          +     Q+ FP
Sbjct: 426 IVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSERTMVFVETKRQADFIATILCQEKFP 485

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  GK  +L A  +    GL++      +V F L  +++E+
Sbjct: 486 TTSIHGDREQWQREQALGDFRSGKCSVLVA-TSVGARGLDIPD-VQFVVNFDLPNNIDEY 543

Query: 145 QQMIERIGVTRQRQAGFK-RAVFVY 168
              + RIG  R  + G   RAV  Y
Sbjct: 544 ---VHRIG--RTGRCGNTGRAVSFY 563


>gi|317476039|ref|ZP_07935291.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907677|gb|EFV29379.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 448

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 17  GENIEAFNS-ASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           G  +   ++ +S+ ++   L+  AV    + +       +K++ L  ++        +V 
Sbjct: 185 GGAVSGSDAPSSQVIRLNFLSEEAVSNRLDLQKVISPEKDKLETLYRLLCTLGDRSTLVF 244

Query: 75  YHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            ++   + R+            AF  G   +     + ++  G  P+          GL+
Sbjct: 245 VNYRESVERVAAYLKSKKFPCDAFHGGMEQEDRERALYKFRNGSCPV-LVSTDLAARGLD 303

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +  G + +V + +  + E       R      R
Sbjct: 304 I-PGIDNVVHYHMPVNEEAFTHRNGRTARWEAR 335


>gi|315222612|ref|ZP_07864501.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188298|gb|EFU22024.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 2325

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T  +      +  +G+I +L       G G N+Q     +    + W   + +Q   
Sbjct: 2232 EANTDKQKDELFAKVRKGEIRILIGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQRSG 2291

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            RI     RQ    + V +Y  I +NT D
Sbjct: 2292 RIV----RQGNENKEVNIYRYITENTFD 2315


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 19/122 (15%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQE 103
           EK K L  I+ K     ++V      +  R+ +   +           ++ +     ++ 
Sbjct: 248 EKSKLLISILHKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALEN 307

Query: 104 WNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  GKI ++ A   A+ G  +N      +++ + L    E +   + RIG  R  +AG  
Sbjct: 308 FKSGKIRVMIATDIAARGIDINELP---LVINYDLPDVPETY---VHRIG--RTGRAGNS 359

Query: 163 RA 164
             
Sbjct: 360 GT 361


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 193 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 240 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 300 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 342


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           L  GA    E+   +     K   L  I++ +     ++  +       +     Q+ FP
Sbjct: 471 LVGGACSDVEQTILEIQEYRKRDKLVEILQSSGNERTMIFVNTKKKADVIAGYLCQEHFP 530

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    I+++  GK P++    A    GL+++   + ++ + +  +++E+
Sbjct: 531 TTSIHGDREQCQREEAIRDFRSGKCPVIVC-TAVAARGLDIENVQH-VINYDVPKEIDEY 588

Query: 145 QQMIERIGVTR 155
              I R G   
Sbjct: 589 VHRIGRTGRCG 599


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 204 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 250

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 251 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 310

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 311 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 353


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           L  GA    E+   +     K   L  I++ +     ++  +       +     Q+ FP
Sbjct: 440 LVGGACSDVEQTILEIQEYRKRDKLVEILQSSGNERTMIFVNTKKKADVIAGYLCQEHFP 499

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    I+++  GK P++    A    GL+++   + ++ + +  +++E+
Sbjct: 500 TTSIHGDREQCQREEAIRDFRSGKCPVIVC-TAVAARGLDIENVQH-VINYDVPKEIDEY 557

Query: 145 QQMIERIGVTR 155
              I R G   
Sbjct: 558 VHRIGRTGRCG 568


>gi|313619157|gb|EFR90940.1| SNF2 family protein [Listeria innocua FSL S4-378]
          Length = 156

 Score = 42.2 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK   +E +I     A  I+   +      L KAFP                  KI 
Sbjct: 23  LSSEKFTIVESLI-AGKEATTIIFCKYKRSEEALIKAFPNV----------------KIT 65

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQY  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 66  TF----AKSSYGLNLQY-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 115

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D L+   +  K+     LL+  KKE
Sbjct: 116 SGNVGLDNLIDSNISKKT----SLLHEFKKE 142


>gi|313107526|ref|ZP_07793713.1| hypothetical protein PA39016_001010066 [Pseudomonas aeruginosa
           39016]
 gi|310880215|gb|EFQ38809.1| hypothetical protein PA39016_001010066 [Pseudomonas aeruginosa
           39016]
          Length = 759

 Score = 42.2 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 19/143 (13%)

Query: 64  EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPCTIQEWNEGKIP 110
           EKA    ++    +        RL+    Q               +    I E  +  I 
Sbjct: 592 EKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRREDWIAEQLDRGID 651

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L  +P     GL+L      +VF    +++   QQ   R       + G K+ V V YL
Sbjct: 652 VLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RIGQKQPVRVIYL 705

Query: 171 IAQNTIDELVLQRLRTKSTIQDL 193
               +     L+ +  K  +   
Sbjct: 706 GYAGSSQMTCLELMAKKIMVSQS 728


>gi|296131125|ref|YP_003638375.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022940|gb|ADG76176.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 946

 Score = 42.2 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ     +V + L W+   H+Q   R+    Q      RAV +Y     N+ID LVL
Sbjct: 548 GVNLQDAFQAVVHYDLAWNPTRHEQREGRVDRFGQTAP-TVRAVTIYG--KDNSIDGLVL 604

Query: 182 QRLRTK 187
             L  +
Sbjct: 605 DVLIRR 610


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 17/126 (13%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
                  +K + LE ++E  +    IV  +  + +  L K+  +              ++
Sbjct: 221 RVNVGQRQKRETLEWLLENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQ 280

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +Q + +G+I +L A   +   GL++  G + +  F   W  +++   + RIG  R 
Sbjct: 281 RNAELQRFKDGEINILVASDVAA-RGLDI-KGVSHVFNFDTPWHPDDY---VHRIG--RT 333

Query: 157 RQAGFK 162
            +AG K
Sbjct: 334 GRAGAK 339


>gi|329965418|ref|ZP_08302342.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328522210|gb|EGF49324.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 12/122 (9%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLD 95
           +       +K++ L  ++        +V  ++   + R+            AF  G    
Sbjct: 223 QRVISPEKDKLETLYRLLCTLGDRSALVFVNYRESVERVTSYLKSKKFPCDAFHGGMEQA 282

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + ++  G  P+          GL++  G + +V + L  + E       R     
Sbjct: 283 DRERALYKFRNGSCPV-LVSTDLAARGLDI-PGIDNVVHYHLPVNEEAFTHRNGRTARWE 340

Query: 156 QR 157
            R
Sbjct: 341 AR 342


>gi|296127753|ref|YP_003635005.1| helicase domain protein [Brachyspira murdochii DSM 12563]
 gi|296019569|gb|ADG72806.1| helicase domain protein [Brachyspira murdochii DSM 12563]
          Length = 564

 Score = 42.2 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGKI 109
           K   ++ IIEK     I++   +   L  ++K         K P   ++     +  G+I
Sbjct: 409 KYTVVKKIIEKLQGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQAERDIIYKKFKTGEI 468

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L          ++L     ++     +   +E  Q   R+G   + + G  ++ F + 
Sbjct: 469 KILIVS-KVANLAVDLPDANVLIQISGTFGSRQEEAQ---RLGRVLRPKKGENKSYF-FS 523

Query: 170 LIAQNTIDEL 179
           +I  +T +E 
Sbjct: 524 IITTDTKEED 533


>gi|218130843|ref|ZP_03459647.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
 gi|217987187|gb|EEC53518.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
          Length = 448

 Score = 42.2 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
           + +       +K++ L  ++        +V  ++   + R+            AF  G  
Sbjct: 214 DLQKVISPEKDKLETLYRLLCTLGDRSTLVFVNYRESVERVAAYLKSKKFPCDAFHGGME 273

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +     + ++  G  P+          GL++  G + +V + +  + E       R   
Sbjct: 274 QEDRERALYKFRNGSCPV-LVSTDLAARGLDI-PGIDNVVHYHMPVNEEAFTHRNGRTAR 331

Query: 154 TRQR 157
              R
Sbjct: 332 WEAR 335


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score = 42.2 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 193 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 240 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 300 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 342


>gi|213965933|ref|ZP_03394124.1| helicase domain protein [Corynebacterium amycolatum SK46]
 gi|213951511|gb|EEB62902.1| helicase domain protein [Corynebacterium amycolatum SK46]
          Length = 1038

 Score = 42.2 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 45/207 (21%)

Query: 20  IEAFNSASKTVKCLQ--LANGAVYYDE---EKHWKEVHDEKIKALEVII-EKANAAPIIV 73
           I   N +   ++ +Q  LA+     D       W+   D K++AL  +  E+  +  I+V
Sbjct: 597 IRWVNPSLFDIRLMQDLLADSRAIRDLLTWYGPWEVQDDSKLRALAKLANERHPSEKILV 656

Query: 74  AYHFNSDLARLQKAF--------------------------PQGRTLDKDPCTIQEWNEG 107
              +      + +                            P+   +  D   +      
Sbjct: 657 FTEYKDTAKYIAEGLRELGVGSVAVATGESEDATTLARRFSPKTTPVSADQKPVA--PAD 714

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I +L A       G NLQ   +I+V F L W + +  Q   R+      + G +    +
Sbjct: 715 EIRVLVA-TDVLSEGQNLQQ-AHIIVNFDLPWAIIKLIQRAGRVD-----RIGQEADTVL 767

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Y +    ++E     L  +  IQ  L
Sbjct: 768 LYTMVHGEVEEQ----LNLRRRIQQRL 790


>gi|90577299|ref|ZP_01233110.1| putative putative ATP-dependent DNA helicase RecQ [Vibrio angustum
           S14]
 gi|90440385|gb|EAS65565.1| putative putative ATP-dependent DNA helicase RecQ [Vibrio angustum
           S14]
          Length = 638

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            DEK+  L+  +      P IV          +           +A+  G   D+     
Sbjct: 211 DDEKLDVLQQQLIAQPNTPSIVYVTLQHTAEEIAATLTNNHIPAQAYHAGMDADRRQHIQ 270

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q++  G+I  + A  A  G G++       ++ F L   +E + Q I R       + G 
Sbjct: 271 QQFMAGEINCIVATIA-FGMGIDKSD-IRQVIHFDLPKSIENYSQEIGR-----AGRDGE 323

Query: 162 KRAVFV 167
                V
Sbjct: 324 NSTCTV 329


>gi|89885781|ref|YP_515979.1| helicase-like [Rhodoferax ferrireducens T118]
 gi|89347779|gb|ABD71981.1| helicase-like [Rhodoferax ferrireducens T118]
          Length = 1726

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +T         +   G I +L    + CG G N+Q     +   +  W   + QQ   
Sbjct: 1330 EAQTHHAKSALFAKVRAGTIRVLIGSTSKCGMGTNVQTRLYAVHHLTTPWRPSDLQQRDG 1389

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI    +RQ     A+ ++  +   T D  + Q L  K+     +L+ 
Sbjct: 1390 RI----ERQGNTCEAIEIWRYVTSGTFDAYMWQTLTAKAGFIAQVLSG 1433


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 202 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 243

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +    + R+ ++  +               K    +  + +G++ +L
Sbjct: 244 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 303

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            A       GL++  G   +  + L +D E++   + RIG  R  + G +
Sbjct: 304 VA-TDVAARGLHI-DGIKYVYNYDLPFDAEDY---VHRIG--RTARLGEE 346


>gi|148359836|ref|YP_001251043.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|148281609|gb|ABQ55697.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
          Length = 958

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + L+ F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLILFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|145300304|ref|YP_001143145.1| ATP-dependent helicase HepA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189029409|sp|A4SR75|RAPA_AERS4 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|142853076|gb|ABO91397.1| RNA polymerase associated protein RapA [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 955

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 26/151 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE  +         V +   S L R           DK         +G   +L     
Sbjct: 506 ALEEALRTREGIRGTVFHEGMSILER-----------DKASAYF-AQEDGGAQVLLCS-E 552

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               G N Q+  + LV F L  + +  +Q I R+      + G +  V ++    + T  
Sbjct: 553 IGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPYLEGTAQ 606

Query: 178 ELV-------LQRLRTKSTIQDLLLNALKKE 201
             +       L            +  A++ E
Sbjct: 607 RALQLWYHDGLDAFEQTCPTARPVFEAVRDE 637


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D E+    V   +K K LE I+   N    +V      +   L     +      
Sbjct: 392 GGACADVEQTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTT 451

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    + ++  G++ +L A  +    GL+++   N +V + L   ++++  
Sbjct: 452 SIHGDRLQREREMALYDFKSGRMDVLIA-TSVAARGLDIKN-VNHVVNYDLPKSIDDY-- 507

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  + G K
Sbjct: 508 -VHRIG--RTGRVGNK 520


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 204 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 250

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 251 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 310

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 311 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 353


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score = 42.2 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D E+    V   +K K LE I+   N    +V      +   L     +      
Sbjct: 392 GGACADVEQTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTT 451

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    + ++  G++ +L A  +    GL+++   N +V + L   ++++  
Sbjct: 452 SIHGDRLQREREMALYDFKSGRMDVLIA-TSVAARGLDIKN-VNHVVNYDLPKSIDDY-- 507

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  + G K
Sbjct: 508 -VHRIG--RTGRVGNK 520


>gi|254582851|ref|XP_002499157.1| ZYRO0E05192p [Zygosaccharomyces rouxii]
 gi|238942731|emb|CAR30902.1| ZYRO0E05192p [Zygosaccharomyces rouxii]
          Length = 1520

 Score = 42.2 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            + ++  Y            +     + +     +      I  L  +  S G GLNL   
Sbjct: 1360 SKVLNIYEIKH-----LSCWANVTNVGEAISKFKRNTS--ITCLLLNVKSLGAGLNLLNA 1412

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             + +       +  +  Q + R       + G  +  +V+  + +N+++E + +
Sbjct: 1413 RH-VFLLDPIINRGDELQAMSR-----NNRIGQTKETYVWNFMIKNSVEENIFK 1460


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score = 42.2 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 422 VGGACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPT 481

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    N +V F L  +++E+ 
Sbjct: 482 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDVPDVLN-VVSFDLPNNIDEY- 538

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 539 --VHRIG--RTGRCGNTGRAVSFY 558


>gi|167762759|ref|ZP_02434886.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
 gi|167699099|gb|EDS15678.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
          Length = 443

 Score = 42.2 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 12/124 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
           + +       +K++ L  ++        +V  ++   + R             AF  G  
Sbjct: 209 DLQKVISPEKDKLETLYRLLCTLGDRSTLVFVNYRESVERTVSYLKSKKFPCDAFHGGME 268

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D     + ++  G  P+          GL++  G + +V + +  + E       R   
Sbjct: 269 QDDRERALYKFRNGSCPV-LVSTDLAARGLDI-PGIDNVVHYHMPVNEEAFTHRNGRTAR 326

Query: 154 TRQR 157
              R
Sbjct: 327 WEAR 330


>gi|58265946|ref|XP_570129.1| hypothetical protein CND04260 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226362|gb|AAW42822.1| hypothetical protein CND04260 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1112

 Score = 42.2 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 30/52 (57%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I  +R  + G ++ V V+ L+ + +++E ++ + + K  +  L++  + KET
Sbjct: 142 IRTSRAYRYGQEKRVLVFKLMIKGSVEETIINKGKRKMVLDHLVVQQMGKET 193


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score = 42.2 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  + L  +    ++   N+A+ TVK  Q                   +K   L  +I+
Sbjct: 204 RELAKGLVNNPVEISVTPRNAAATTVK--QWVC-----------PVDKSQKSALLIQLIK 250

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         RL K+                       + ++  G+  +L A
Sbjct: 251 QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVA 310

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  GL++      +V F L    E++   + RIG T R   +G 
Sbjct: 311 -TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 353


>gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
 gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
          Length = 521

 Score = 42.2 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           E+  +     +K + L  ++ + N   ++V  +   ++ R+++   +             
Sbjct: 357 EQHVYAVAGSDKYRLLYNLVTRNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVP 416

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++ + EG+I +L A     G G+++  G + ++ ++L  D +++   + RIG 
Sbjct: 417 QHKRIKVLEGFREGRIRVLVA-TDVAGRGIHV-EGVSHVINYTLPEDPDDY---VHRIG- 470

Query: 154 TRQRQAGFKRA 164
            R  +AG K  
Sbjct: 471 -RTGRAGSKGT 480


>gi|24372168|ref|NP_716210.1| ATP-dependent helicase HepA [Shewanella oneidensis MR-1]
 gi|41017732|sp|Q8EJ93|RAPA_SHEON RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|24346069|gb|AAN53655.1|AE015504_5 RNA polymerase-associated protein HepA [Shewanella oneidensis MR-1]
          Length = 968

 Score = 42.2 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G K  + ++    Q+T  E +LQ
Sbjct: 601 IGQKNDIQIHLPYLQDTAQERLLQ 624


>gi|254244594|ref|ZP_04937916.1| hypothetical protein PA2G_05460 [Pseudomonas aeruginosa 2192]
 gi|126197972|gb|EAZ62035.1| hypothetical protein PA2G_05460 [Pseudomonas aeruginosa 2192]
          Length = 751

 Score = 42.2 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPII---VAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++   V        +RL+K   Q               +   
Sbjct: 573 KEQALVGLCLEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQAGLKVAVLRASVDTARRED 632

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 633 WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFLQTGYNVYTLQQAARRSW-----RI 686

Query: 160 GFKRAVFV 167
           G K  V V
Sbjct: 687 GQKHPVRV 694


>gi|87198378|ref|YP_495635.1| helicase-like [Novosphingobium aromaticivorans DSM 12444]
 gi|87134059|gb|ABD24801.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 933

 Score = 42.2 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV-FVYYLIAQNTIDELV 180
           G+NLQ   N +V + L W+   HQQ   R+    Q        V  V    A + ID  V
Sbjct: 541 GINLQSLFNAVVHYDLNWNPTRHQQRDGRVDRFGQ----QAERVWSVMMFGANSIIDGAV 596

Query: 181 LQRLRTK 187
           ++ +  K
Sbjct: 597 IKVITEK 603


>gi|154243836|ref|YP_001409409.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162958|gb|ABS70173.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1697

 Score = 42.2 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 28/180 (15%)

Query: 30   VKCLQLANGA----------VYYDEEKHWKEVHDEKIKALEVI----IEKANAAPIIVAY 75
             K  QL   A           Y        E+          +    +EK+       AY
Sbjct: 1266 NKLNQLVANAFRIWQETAENTYVRGNGKSYELPGAAQMIFSDLGTLGVEKSRG---FSAY 1322

Query: 76   -HFNSDLARL------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
                 +L RL             +  D       +   GK+  L     + G G+N Q  
Sbjct: 1323 RWIRDELVRLGVPAAEIAFIQDYKKSDAKQRLFGDVRAGKVRFLLGSSDTMGTGVNAQLR 1382

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               L    + W   + +Q   RI     RQ      + ++      ++D  + Q    K+
Sbjct: 1383 LKALHHLDVPWLPSQIEQREGRI----ARQGNQHDVIDIFAYATLGSLDARMWQNNERKA 1438


>gi|325571141|ref|ZP_08146713.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
 gi|325156226|gb|EGC68412.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 24/154 (15%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DK 96
            E   +K  AL   + +   A II    + S  +++++ + + R              D+
Sbjct: 205 VEKTSDKDAALADYLSRLGGAGII----YCSTRSKVEEVYNKLRQRYSVGYYHGGLASDQ 260

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                Q++++ K+ LL A   + G G+N +     ++ + L   LE + Q I R G   +
Sbjct: 261 RKTLQQQFSQNKLKLLVA-TNAFGMGIN-KEDIRFVIHYDLPDSLENYSQEIGRAGRDGK 318

Query: 157 RQAG----FKRAVFVYYLIAQNTIDELVLQRLRT 186
           + +      +    ++Y   +   +E   + L  
Sbjct: 319 QSSAILLYQEHDEQIHYFFQRENKEER--RALER 350


>gi|332180123|gb|AEE15811.1| helicase domain-containing protein [Treponema brennaborense DSM
           12168]
          Length = 638

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-----EWNEGK 108
            K   ++ +I++     I++   +   LA L +         K P   +     ++  G 
Sbjct: 469 AKTPVVQELIKRFPEDKILIIGQYLDQLAELARLLNAPVITGKTPTAERDRIYADFRNGV 528

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +L          ++L      +     +   +E  Q + RI   +      +R    +
Sbjct: 529 IQVLVVS-KVANFAIDLPDASMAIQVSGTFGSRQEEAQRLGRILRPK------ERTSRFF 581

Query: 169 YLIAQNTIDE 178
            LI +NT++E
Sbjct: 582 TLITRNTVEE 591


>gi|304410892|ref|ZP_07392509.1| SNF2-related protein [Shewanella baltica OS183]
 gi|307304937|ref|ZP_07584687.1| SNF2-related protein [Shewanella baltica BA175]
 gi|304350789|gb|EFM15190.1| SNF2-related protein [Shewanella baltica OS183]
 gi|306912339|gb|EFN42763.1| SNF2-related protein [Shewanella baltica BA175]
          Length = 968

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G K  + ++    ++T  E ++Q
Sbjct: 601 IGQKNDIQIHLPYLEDTAQERLMQ 624


>gi|160877020|ref|YP_001556336.1| ATP-dependent helicase HepA [Shewanella baltica OS195]
 gi|217974883|ref|YP_002359634.1| ATP-dependent helicase HepA [Shewanella baltica OS223]
 gi|189029430|sp|A9L3Y2|RAPA_SHEB9 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|254789695|sp|B8ECC6|RAPA_SHEB2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|160862542|gb|ABX51076.1| SNF2-related protein [Shewanella baltica OS195]
 gi|217500018|gb|ACK48211.1| SNF2-related protein [Shewanella baltica OS223]
 gi|315269223|gb|ADT96076.1| SNF2-related protein [Shewanella baltica OS678]
          Length = 968

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G K  + ++    ++T  E ++Q
Sbjct: 601 IGQKNDIQIHLPYLEDTAQERLMQ 624


>gi|126172784|ref|YP_001048933.1| ATP-dependent helicase HepA [Shewanella baltica OS155]
 gi|189029428|sp|A3D001|RAPA_SHEB5 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|125995989|gb|ABN60064.1| SNF2-related protein [Shewanella baltica OS155]
          Length = 968

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G K  + ++    ++T  E ++Q
Sbjct: 601 IGQKNDIQIHLPYLEDTAQERLMQ 624


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 210 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +    + R+ ++  +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            A       GL++  G   +  + L +D E++   + RIG  R  + G +
Sbjct: 312 VA-TDVAARGLHI-DGIKYVYNYDLPFDAEDY---VHRIG--RTARLGEE 354


>gi|319892532|ref|YP_004149407.1| hypothetical protein SPSINT_1243 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162228|gb|ADV05771.1| hypothetical protein SPSINT_1243 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 383

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 31/201 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y+  + E    ++   +   N+       +                   DEK    + I
Sbjct: 206 KYNVLKEEFLQKIKDGELL-LNTLVNMQYLM-----------------FTDEK--RCKEI 245

Query: 63  IEKANAAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                   I+   +   ++ ++ K    +      D     ++ +     P L       
Sbjct: 246 AASLKGQQIVYCCYLK-EVEQISKHCDCYVITGDTDNRSEVLKRFKGDDKP-LIMTYGVG 303

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G NLQ+  N + F S+ +D  + +Q + RI     ++ G +R +   Y+ +   I  L
Sbjct: 304 SFGHNLQF-CNRITFASITFDYAKVEQAMYRI-----KRLGQERIIHYRYIRSDLGIYNL 357

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           +   L  KS + DL++  L+K
Sbjct: 358 MYDNLTKKSNLHDLIIRDLEK 378


>gi|297194691|ref|ZP_06912089.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152397|gb|EDY64263.2| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 1097

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           G I LL         G+NL    + L+ + L W L   +Q   RI    Q
Sbjct: 563 GDIRLLLTG-DGASEGVNLHRQCHHLIHWDLPWSLIRVEQRNGRIDRYGQ 611


>gi|9629032|ref|NP_044051.1| MC100R [Molluscum contagiosum virus subtype 1]
 gi|6707719|sp|Q98267|NTP1_MCV1 RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|1492043|gb|AAC55228.1| MC100R [Molluscum contagiosum virus subtype 1]
          Length = 634

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCG 120
            +   I V Y    ++  +       RT D     + E+N      G++        S  
Sbjct: 390 LSGIRIFVKY---LEVFGISYIEFSSRTKDTRTRAVAEFNRVENTNGELIKTCVFSLSGN 446

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ----- 173
            G++     +I +   + W+    +Q+I R             +R V V++++AQ     
Sbjct: 447 EGISFLSINDIFIL-DMTWNEASLKQIIGRAIRLHSHANNPPERRYVNVHFVVAQLGSGA 505

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            ++D+ +L+ ++ K+     L   LK
Sbjct: 506 PSVDDDLLEIIQNKAREFSQLYRVLK 531


>gi|320593937|gb|EFX06340.1| DNA/RNA helicase [Grosmannia clavigera kw1407]
          Length = 1000

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +L A   +   GL+L       +    +W+ ++ +Q + R+      +AG     
Sbjct: 904 AGVSRVLIATIGTSAEGLDLTRASYAFIL-EPYWNHDQERQALGRVL-----RAGQCAQT 957

Query: 166 FVYYLIAQNTIDELVLQRLR--TKSTIQ 191
            +Y L+  + I E ++Q  +   ++  Q
Sbjct: 958 HLYKLVCPDNIAERLIQCRQMGRRAATQ 985


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 77/210 (36%), Gaps = 37/210 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+  +  REL  D     +   ++A+ TV             ++K     H +K+K L  
Sbjct: 187 KEIEQLGRELLRDPADVRVAPQSTAADTV-------------DQKICFVGHSDKLKVLAE 233

Query: 62  IIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           I+++      I+         R+           KA    +T  +   T++ +  G   +
Sbjct: 234 ILKQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHV 293

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L A       GL++    + ++ F+L  + E +   I RIG  R  +AG          I
Sbjct: 294 LVA-TDVASRGLDIPEVSH-VINFNLPQEPEAY---IHRIG--RTGRAGESG-------I 339

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           A    +E  +  L+    I    +  +K E
Sbjct: 340 AITLCEEDEMDLLKEVEKILKREIPEMKTE 369


>gi|256383977|gb|ACU78547.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384809|gb|ACU79378.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455816|gb|ADH22051.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 514

 Score = 42.2 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
                +   A + A+  ++  Q++ G       K +      ++  LE ++        I
Sbjct: 306 LSYPDDKWIAGDDATFWLRTRQISIGF--QGNSKDYYWFDYSRLNKLEQLLTDKID-NYI 362

Query: 73  VAYHFNSDLARLQKAFPQGRTL----DKDPCTIQEW-----------NEGKIPLLFAHPA 117
           + Y+++ +   + K   +        + +   I  +              K  ++ A+  
Sbjct: 363 IFYNYDPEFDEIYKICKKLDYKIDIWNGNKKDITNYLEYLNLNIKDKPNSKKRVIIANYF 422

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S   G N Q     ++F      L  +   I    + R  + G K  +  Y  +  N +D
Sbjct: 423 SASTGNNWQEYDKTILF-----SLATYGYHI--QALKRNHRIGTKNTITYYLFLQDNYLD 475

Query: 178 ELVLQRLRTKS 188
           + +   ++ + 
Sbjct: 476 KSMWDSIQKRQ 486


>gi|152012467|gb|AAI50169.1| Si:ch211-278b8.3 protein [Danio rerio]
          Length = 579

 Score = 42.2 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 15/114 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA-----------RLQKAFPQG 91
             H       K++ +  ++E  +      ++       L            RL +     
Sbjct: 466 SDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTV 525

Query: 92  RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             L +    I  +   K   +        G G+ L  G N +V F   W+    
Sbjct: 526 TQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLT-GANRVVIFDPSWNPATD 578


>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
 gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus kodakarensis KOD1]
          Length = 804

 Score = 42.2 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 35/168 (20%)

Query: 55  KIKALEVIIEKANAAP----IIVAYHFNSDLARL-----------QKAFPQGRTLD---- 95
           K++ L+ ++++         IIV  ++     ++           ++   Q    D    
Sbjct: 342 KMEKLKELVKEQLGKKPSSKIIVFTNYRDTGKKIVEELRSMGITAERFIGQASRKDDRGM 401

Query: 96  ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    +  ++ G+  +L A  +    GL++    +++VF+          Q      
Sbjct: 402 SQREQKEVLDRFSRGEFNVLVA-TSVGEEGLDVPE-VDLVVFYEPVPSAIRSIQ------ 453

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             R+ + G  R   V  L+A+ T DE      R K      + +A+KK
Sbjct: 454 --RRGRTGRHRPGRVVILMAKGTRDEAYYWASRRKEKG---MFDAIKK 496


>gi|225734430|gb|ACO25198.1| NTPase/helicase [Epizootic haematopoietic necrosis virus]
          Length = 948

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 99  CTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +Q +N     +G    L         GL  +   + ++  +  W+  E  Q I R   
Sbjct: 436 KIVQRFNHEDNVDGAYVSLLLGSRVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSWR 494

Query: 154 TRQR----QAGFKRAVFVYYLIA----QNT---IDELVLQRLRTKST 189
                     G   AV V+ L+A    ++T   ID  +      K  
Sbjct: 495 AGSHDRLKARGEAAAVTVHRLVAVPRGRDTPRSIDSDMYAVSEVKDK 541


>gi|189461123|ref|ZP_03009908.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
 gi|189432213|gb|EDV01198.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
          Length = 1658

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T         + N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 1283 QFIQYAKTERARKKLFADMNSGRVRVLFGSTSMLGTGVNAQERAVAVHHLEIPWRPADME 1342

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +        V +Y    + T+D      L+TK  
Sbjct: 1343 QRNGRAVRKGNTVKLWGNNTVDVVIYG--TEKTLDAYKFNLLKTKQM 1387


>gi|219849463|ref|YP_002463896.1| helicase domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219543722|gb|ACL25460.1| helicase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 957

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           VA  F   L+ +      GR  +++   +        P +         G+NL    N  
Sbjct: 501 VARAFRHHLSGVHVTCVTGRMGEEERRAVIAAAPVDQPRVLVATDCISEGINLHERYNAA 560

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQNTIDELVLQRLRTKS 188
           + + L W+    +Q   R+      + G      V V Y    N +D +V+  L  K+
Sbjct: 561 IHYDLPWNPNRLEQREGRVD-----RYGQTAPTVVTVRYYGLNNEVDTVVIDVLLRKA 613


>gi|71908162|ref|YP_285749.1| helicase, C-terminal [Dechloromonas aromatica RCB]
 gi|71847783|gb|AAZ47279.1| Helicase, C-terminal [Dechloromonas aromatica RCB]
          Length = 1669

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG++ +L    A  G G N+Q     L      W   + +Q   RI     RQ      V
Sbjct: 1327 EGRVRVLLGSTAKMGVGTNVQTRLVALHHLDAPWRPCDVEQREGRIL----RQGNLSEEV 1382

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             ++  + Q + D    Q L TK+     ++   K
Sbjct: 1383 EIFRYVTQQSFDSYSWQTLETKARFIAQVMAGDK 1416


>gi|317968385|ref|ZP_07969775.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0205]
          Length = 524

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 67  NAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGH 121
               ++V   F +    LQ+    A   GR    D    +  +  G   LL +     G 
Sbjct: 375 EGQAVVVFTAFVAAAQLLQQRLGGALLTGRLAAADRQGVVDRFQAGHEQLLISTFGVGGL 434

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G  L    + +V     W   + +Q  +R       + G +  +  ++L      D+LV 
Sbjct: 435 GFTLHRAKH-VVLLERPWTPGDAEQAEDRC-----HRIGMQGTLECHWLQL-GVADQLVD 487

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             +  K+    LLL+  + +
Sbjct: 488 GLIADKAERIALLLSRGQAQ 507


>gi|307947066|ref|ZP_07662401.1| helicase domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307770730|gb|EFO29956.1| helicase domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 923

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHF----NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           +  IKAL+ +I+  + A  +V   +          L+KAFP+            +    +
Sbjct: 446 NALIKALKPLIK--DGANPVVFCRYLATAEHVKEGLRKAFPKLNVQAVTGELTPDERRDR 503

Query: 109 I------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +              +         G+NLQ   + ++ + L W+   HQQ   R+    Q
Sbjct: 504 VAEMAAEESAATDQRILVATDCLSEGINLQQLFDTVIHYDLSWNPTRHQQREGRVNRFGQ 563


>gi|296107886|ref|YP_003619587.1| ATP-dependent helicase HepA [Legionella pneumophila 2300/99 Alcoy]
 gi|295649788|gb|ADG25635.1| ATP-dependent helicase HepA [Legionella pneumophila 2300/99 Alcoy]
          Length = 958

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLVLFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 19/135 (14%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           +  V   E+  +     EK K L  I+ K     ++V      +  R+ +   +      
Sbjct: 211 SSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQSVLVFSRTKHNADRIVRVLSKAGIGSQ 270

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                ++ +     ++ +  GKI ++ A   A+ G  +N      +++ + L    E + 
Sbjct: 271 AIHGNKSQNARQSALENFKTGKIRVMIATDIAARGIDINELP---LVINYDLPDVPETY- 326

Query: 146 QMIERIGVTRQRQAG 160
             + RIG  R  +AG
Sbjct: 327 --VHRIG--RTGRAG 337


>gi|307611138|emb|CBX00782.1| RNA polymerase-associated protein HepA [Legionella pneumophila
           130b]
          Length = 958

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLVLFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 438 VGGACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPT 497

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 498 TSIHGDREQREREQALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPSNIDEY- 554

Query: 146 QMIERIGVTRQRQAGFK-RAVFVY 168
             + RIG  R  + G   RAV  Y
Sbjct: 555 --VHRIG--RTGRCGNTGRAVSFY 574


>gi|114564661|ref|YP_752175.1| ATP-dependent helicase HepA [Shewanella frigidimarina NCIMB 400]
 gi|122298617|sp|Q07XC8|RAPA_SHEFN RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|114335954|gb|ABI73336.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
          Length = 968

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +D   I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEDMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + L+ F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LILFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G +  + ++    ++T  E +++
Sbjct: 601 IGQQNDIQIHLPYLRDTAQERLMR 624


>gi|148664593|gb|EDK97009.1| mCG1031601 [Mus musculus]
          Length = 76

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G +  V V  L   N+++E +L+  + K  +   ++ 
Sbjct: 3   QAQDRAHRIGQQNEVQVLRLCTVNSVEEKILEAAKYKLNVDQKVIQ 48


>gi|52842509|ref|YP_096308.1| ATP-dependent helicase HepA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629620|gb|AAU28361.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 958

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLVLFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|54295138|ref|YP_127553.1| ATP-dependent helicase HepA [Legionella pneumophila str. Lens]
 gi|53754970|emb|CAH16458.1| RNA polymerase-associated protein HepA [Legionella pneumophila str.
           Lens]
          Length = 958

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLVLFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
              D K++ L  +I + N   ++V  ++      + K               +       
Sbjct: 226 VDEDRKLELLSELIGRKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+  GK  ++ A       GL++Q G   +V + + +  E++   + RIG  R  +A
Sbjct: 286 ALEEFKTGKARVMVA-TEVAARGLDIQ-GLPHVVNYDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G +
Sbjct: 339 GQQ 341


>gi|312888635|ref|ZP_07748204.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311298949|gb|EFQ76049.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 1866

 Score = 41.8 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  + P   ++ N G+I +L       G GLN+Q     L  F + W  ++  Q   R  
Sbjct: 1427 TDKQKPTLFKKMNRGEIRILLGSTEKAGTGLNVQELIVALHDFDIPWTPKDLDQRGGRGA 1486

Query: 153  VTRQRQAGFKRAVFVYYLIAQN--TIDELVLQRLRTKS 188
                + A   R   V   I  N  ++D   L  L+ K 
Sbjct: 1487 RQGNKAAKKYRDNKVKRYIYGNEKSLDNYKLNLLKNKQ 1524


>gi|54298189|ref|YP_124558.1| ATP-dependent helicase HepA [Legionella pneumophila str. Paris]
 gi|53751974|emb|CAH13400.1| RNA polymerase-associated protein HepA [Legionella pneumophila str.
           Paris]
          Length = 958

 Score = 41.8 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 530 ERDRAAAYFAEQENGAQVLVCSEIGSEGR--NFQFS-HHLVLFDLPLNPDLLEQRIGRLD 586

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++      T  E + +
Sbjct: 587 -----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score = 41.8 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 18/175 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFP-- 89
           G+   +  +  + V D +K   L  I+        ++               + + FP  
Sbjct: 425 GSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPAT 484

Query: 90  ---QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT  +    ++ +  GK P+L A  A    GL++    + ++ + L  D++++  
Sbjct: 485 SIHGDRTQRERERALELFRNGKCPILVA-TAVAARGLDIPNVTH-VINYDLPTDVDDY-- 540

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + RIG  R  +AG       ++      I   +L  L+  +      L  + +E
Sbjct: 541 -VHRIG--RTGRAGNTGIATAFFNRGNRGIVRELLDLLKEANQEVPAFLETIARE 592


>gi|213965986|ref|ZP_03394176.1| superfamily II DNA/RNA helicase, SNF2 family [Corynebacterium
           amycolatum SK46]
 gi|213951400|gb|EEB62792.1| superfamily II DNA/RNA helicase, SNF2 family [Corynebacterium
           amycolatum SK46]
          Length = 1004

 Score = 41.8 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+      L +         G+NL    + LV + + W L   QQ   RI    Q
Sbjct: 503 ELIDEFKRTDTKLRVLITGDVASEGVNLHAQCHDLVHYDIPWSLIRIQQRNGRIDRYGQ 561


>gi|117925306|ref|YP_865923.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609062|gb|ABK44517.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 948

 Score = 41.8 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   N +V + L W+   H+Q   R  V R  Q   K  V +YY    N +D  VL
Sbjct: 547 GINLQNLFNAVVHYDLTWNPTRHEQREGR--VDRFGQPSPKVRVLMYY-GENNPVDGAVL 603

Query: 182 QRLRTKST 189
           Q +  K+ 
Sbjct: 604 QVILRKAE 611


>gi|330885761|gb|EGH19910.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 752

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKALNRRVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    W++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGWNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|315223997|ref|ZP_07865838.1| probable DNA methylase [Capnocytophaga ochracea F0287]
 gi|314945968|gb|EFS97976.1| probable DNA methylase [Capnocytophaga ochracea F0287]
          Length = 1599

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +        I + NEGKI +LF      G G+N Q     +    + W   + Q
Sbjct: 1421 RFIQEAKNDKMRKQLISDTNEGKIRVLFGSTDMLGTGVNAQKKAVAVHHLDIPWRPSDLQ 1480

Query: 146  QMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R         +  A  K  V +Y    + ++D      L  K    D L
Sbjct: 1481 QRDGRAIRKGNEVAKYFADNKVDVIIY--AVEKSLDSYKFNLLFNKQLFIDQL 1531


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ ++E+    
Sbjct: 198 SATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLVEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G I +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDIDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDREDY---VHRIGRTGRAGASGHS 356


>gi|328949537|ref|YP_004366873.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328449861|gb|AEB15576.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2135

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 93   TLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T +K      E+N+ K PL +     +   G++L     ++   SL W+  E  Q   RI
Sbjct: 1432 TPEKKEKITAEFNDPKNPLKIIIGGKNTSEGIDLNGNSFVMYNCSLGWNPSETIQAEGRI 1491

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 RQ   +  V + Y +  ++ID L+ Q+   K +  + L
Sbjct: 1492 ----WRQGNMQGHVHIVYPVMTDSIDSLLYQKHDEKRSRINDL 1530


>gi|320326210|gb|EFW82265.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 752

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKALNRRVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    W++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGWNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|153002296|ref|YP_001367977.1| ATP-dependent helicase HepA [Shewanella baltica OS185]
 gi|189029429|sp|A6WSX5|RAPA_SHEB8 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|151366914|gb|ABS09914.1| SNF2-related protein [Shewanella baltica OS185]
          Length = 968

 Score = 41.8 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G K  + ++    ++T  E +++
Sbjct: 601 IGQKNDIQIHLPYLEDTAQERLMK 624


>gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 486

 Score = 41.8 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 29/165 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IEA N AS+ V             E+  +     +K K L  +I   
Sbjct: 297 LAKQWTTDPSIVEIEALNVASENV-------------EQHIYAVAGADKYKLLYNLINDN 343

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
               ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 344 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA-T 402

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
              G G+++  G + ++ F+L    +++   + RIG T R   AG
Sbjct: 403 DVAGRGIHI-DGISHVINFTLPEVPDDY---VHRIGRTGRAGAAG 443


>gi|310799699|gb|EFQ34592.1| hypothetical protein GLRG_09736 [Glomerella graminicola M1.001]
          Length = 696

 Score = 41.8 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +   +I+ + E    + +L A+     +GL+LQ       F  + W +  H Q   R+  
Sbjct: 303 ERSVSIERFTEAGSGVEVLVANTNISLNGLDLQDQCYNGAFVGVEWSINAHIQGAGRLV- 361

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               + G K  V  + L  ++T  + + + + +K
Sbjct: 362 ----RVGQKHPVIFHMLKVKHTYYDYMERNMVSK 391


>gi|154483947|ref|ZP_02026395.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560]
 gi|149734989|gb|EDM50875.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560]
          Length = 2219

 Score = 41.8 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 1836 DAKTDAQRDILFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHIDCPWKPSSIEQREG 1895

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V VY  + + T D      +  K      ++ +
Sbjct: 1896 R----GIRQGNLNEEVAVYRYVTKETFDAYSWSLVENKQRFISQVMTS 1939


>gi|119509553|ref|ZP_01628700.1| Type III restriction enzyme, res subunit [Nodularia spumigena
           CCY9414]
 gi|119465742|gb|EAW46632.1| Type III restriction enzyme, res subunit [Nodularia spumigena
           CCY9414]
          Length = 1100

 Score = 41.8 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 91  GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G   +K    +  + N     +L     S   GLNLQ+  +  + F L W   + +Q I 
Sbjct: 614 GEPREKVAENLTRFQNNPDCFILVCD-RSGEEGLNLQF-ADCFIHFDLPWSPNKLEQRIG 671

Query: 150 RIGVTRQRQAGFKRAVFVYYLI 171
           R       + G K  V  Y L+
Sbjct: 672 RFD-----RIGSKIGVQSYALL 688


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score = 41.8 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  +++       +V          +     Q     
Sbjct: 466 VGGACSDIEQLIIQVTRYSKREQLLEMLKTTGDERTMVFVETKRSADFIATFLCQEKVPT 525

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++++  + +V F L   +EE+ 
Sbjct: 526 TSIHGDREQREREKALSDFRTGKCPVLVA-TSVAARGLDIEHVQH-VVNFDLPKSIEEYV 583

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 584 HRIGRTGRCG 593


>gi|21229102|ref|NP_635024.1| DNA repair helicase [Methanosarcina mazei Go1]
 gi|20907658|gb|AAM32696.1| DNA repair helicase [Methanosarcina mazei Go1]
          Length = 474

 Score = 41.8 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCTI-QEWNE 106
            D KI+ L  I+E+     I +    N  + R+  +F       RT  K+  +I +++ E
Sbjct: 318 SDSKIEKLREILEQHRDDRIFIFTEHNRLVHRISNSFFIPAITYRTPSKERSSILEKFRE 377

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+   +         G+++    NI +  S       + Q + RI   +       +   
Sbjct: 378 GRYRAVVTS-KVLDEGIDVPE-ANIGIIASGTGSKRAYVQRLGRILRQK-----EGKEAV 430

Query: 167 VYYLIAQNTIDELVLQRLRT 186
           +Y +IA+ T +    +R + 
Sbjct: 431 LYEIIAEETTETGTAKRRKE 450


>gi|302797110|ref|XP_002980316.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
 gi|300151932|gb|EFJ18576.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
          Length = 1527

 Score = 41.8 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +E   +    + G +    V+  I +NT++E + +  + K+ +
Sbjct: 698 PAVEAQAINLVHRIGQRLKTLVHRFIIRNTVEENIYKMNQQKTNL 742


>gi|224104919|ref|XP_002333885.1| predicted protein [Populus trichocarpa]
 gi|222838888|gb|EEE77239.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score = 41.8 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P+L        +G NL    + +V      +     Q + R+      + G ++   V+
Sbjct: 37  VPVLLLLIQHGANGPNLLEAQH-VVLVEPLLNPAAEAQAVSRV-----HRIGQEKRTLVH 90

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I   TI++ V+    T   +   ++
Sbjct: 91  RFIV--TIEDTVMDNEDTVVAVARDMI 115


>gi|224136300|ref|XP_002326827.1| hypothetical protein POPTRDRAFT_781297 [Populus trichocarpa]
 gi|222835142|gb|EEE73577.1| hypothetical protein POPTRDRAFT_781297 [Populus trichocarpa]
          Length = 485

 Score = 41.8 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 35/164 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVY---------YDEEKHWKE 50
           K Y    R+    L   +  A N  S     +QL  A    Y         Y+E +H  +
Sbjct: 308 KVYTSILRKELPKLLALSSSASNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVK 367

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEW 104
               K+  L+ ++EK +     +++       L  LQ      +     LD      + +
Sbjct: 368 -ASGKLIILDQLLEKLHDSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERF 426

Query: 105 --------NEGKI---------PLLFAHPASCGHGLNLQYGGNI 131
                     G+           +      + G GLNL     +
Sbjct: 427 AAIRSFSGQSGRSGSESDQNSSFVFMISTRAGGVGLNLVAADTV 470


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 41.8 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 33/158 (20%)

Query: 55  KIKALEVII-EKANAAP---IIVAYHFNSD-------LARLQKAFP------------QG 91
           K+  ++ I+ ++ N  P   +IV  ++          L+ ++   P            +G
Sbjct: 361 KLAVVKDIVSKELNGKPDSRVIVFTNYRDTSEMVTNALSEIKDIRPVKFVGQSSKFKDKG 420

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T  +    I+++  G+  +L A  +    GL++    +++VF+          Q     
Sbjct: 421 LTQKQQVEIIEKFKAGEYNVLVA-TSVAEEGLDI-PATDLVVFYEPVPSEIRSIQ----- 473

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              R+ + G K    V  L+ + T DE        K  
Sbjct: 474 ---RKGRTGRKHEGRVVVLVTKGTRDEAYYWSCAHKEK 508


>gi|313834526|gb|EFS72240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
          Length = 552

 Score = 41.8 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|315282158|ref|ZP_07870626.1| SNF2 family protein [Listeria marthii FSL S4-120]
 gi|313614190|gb|EFR87866.1| SNF2 family protein [Listeria marthii FSL S4-120]
          Length = 399

 Score = 41.8 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E ++     +  I+   +      LQKAFP                  KI 
Sbjct: 266 LSSEKFTITESLV-AGKESTTIIFCKYKRSEEALQKAFPNV----------------KIT 308

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 309 TF----AKSSYGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D L+   +  K+     LL   KKE
Sbjct: 359 SGNVGLDSLIDTNISKKTN----LLQEFKKE 385


>gi|242310330|ref|ZP_04809485.1| superfamily protein DNA/RNA helicase [Helicobacter pullorum MIT
           98-5489]
 gi|239522728|gb|EEQ62594.1| superfamily protein DNA/RNA helicase [Helicobacter pullorum MIT
           98-5489]
          Length = 812

 Score = 41.8 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 84  LQKAFPQGRTLDKDPCTIQE----W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           L+  FP  +    D     +    W  E    +L  +P     GL+L  G   ++F+   
Sbjct: 562 LKANFPDKKINFLDSKIKADKRDVWIKENPCDVLVCNPELVKTGLDL-LGFPTIIFYETG 620

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +++   +Q   R       + G K    V +L   NT  +  L  +  K    + L
Sbjct: 621 YNVSTLKQASRRAW-----RIGQKETCKVKFLTYANTPQQTALALMSKKIKALNSL 671


>gi|154310415|ref|XP_001554539.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
 gi|150851459|gb|EDN26652.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
          Length = 2323

 Score = 41.8 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNEGKIP 110
            LE I E A               AR++ A      +D         DP    E  +    
Sbjct: 2171 LEDIKEAAAPE------------ARIRNALADDVPVDWTRVGKEAFDPEDFAENPDPTAR 2218

Query: 111  LLFAHPA-SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF--KRAVFV 167
            +LF   A     G NL    +I +F + ++  ++         + R  + G      V V
Sbjct: 2219 ILFLDIADESAAGSNLTVAQHI-IFLTPYFAEKQKYNSSMTQAMGRAIRQGQAPGSTVTV 2277

Query: 168  YYLIAQNTIDELV 180
            ++L+ Q++++  +
Sbjct: 2278 HHLLVQDSVETDI 2290


>gi|109644380|ref|YP_659410.1| SNF2 family DNA/RNA helicase [Haloquadratum walsbyi DSM 16790]
 gi|109627347|emb|CAJ51105.1| superfamily II DNA/RNA helicases, SNF2 family [Haloquadratum
           walsbyi DSM 16790]
          Length = 1227

 Score = 41.8 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 36/168 (21%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------GRTL 94
           +E  D KI  L  I+ +     ++V   + +    +  +                     
Sbjct: 745 REFRDPKIDRLVKILSENEGK-VLVFTQYRATARYIHSSLLGHSDSPTTSSNSAVVVGGD 803

Query: 95  DKDPCTIQEW------------NEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           D     I+ +            N  +  L       +   G+NLQ     +V + L W+ 
Sbjct: 804 DHKQEVIKRFAPNASGYQRQLTNSSRTELQYVVATDTLSEGVNLQD-VETVVNYDLPWNP 862

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV--LQRLRTK 187
               Q + R+      + G     +V+       I+  +  L+RL+ K
Sbjct: 863 MRIVQRVGRVD-----RIGNTDDKYVHNFYPDGDIEATIKLLKRLQAK 905


>gi|300778009|ref|ZP_07087867.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300503519|gb|EFK34659.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1811

 Score = 41.8 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T  +    I+  NEGKI +LF   +  G G+N Q     +      W   +  
Sbjct: 1407 RFIQEAKTDKQRKDLIKGMNEGKIRVLFGSTSMLGTGVNAQKRAVAVHHLDTPWRPSDLA 1466

Query: 146  QMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R         +  A  K  V +Y    + ++D      L  K    D L
Sbjct: 1467 QRDGRAIRKGNEIAKHFADNKVDVIIY--AVEKSLDSYKFNLLFNKQLFIDQL 1517


>gi|156323240|ref|XP_001618389.1| hypothetical protein NEMVEDRAFT_v1g59717 [Nematostella vectensis]
 gi|156198722|gb|EDO26289.1| predicted protein [Nematostella vectensis]
          Length = 72

 Score = 41.8 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                RL  +    +  D+        N   I +      + G G+NL     + V   +
Sbjct: 13  KHKYMRLDGS---SKISDRRDMVADFQNNKDIFVFLLSTRAGGLGINLTAADTVSVVLQI 69

Query: 138 W 138
           W
Sbjct: 70  W 70


>gi|316974660|gb|EFV58143.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 737

 Score = 41.8 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               R  + G   +V + YL+A+ T D+ +   ++ K  I
Sbjct: 629 QAEDRAHRVGQLNSVLIIYLVAKGTADDNIWTMIKKKLEI 668


>gi|319764667|ref|YP_004128604.1| dead-like helicase [Alicycliphilus denitrificans BC]
 gi|317119228|gb|ADV01717.1| DEAD-like helicase [Alicycliphilus denitrificans BC]
          Length = 759

 Score = 41.8 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLDFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K+ V V YL    T     L+ +  K  +   
Sbjct: 693 RIGQKQHVRVIYLGYAATSQMTCLELMAKKIMVSQS 728


>gi|51870029|ref|YP_073582.1| hypothetical protein LDVICp075 [Lymphocystis disease virus -
           isolate China]
 gi|51858237|gb|AAU10921.1| hypothetical protein [Lymphocystis disease virus - isolate China]
          Length = 945

 Score = 41.8 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           + A       +  P  IQ +N     +G +  L         G+ L+   +++V  +  W
Sbjct: 417 RYALLTAEQKNIQP-LIQRFNRLDNVDGDVIKLILGSRVVSEGITLKNVRDLIVL-TPHW 474

Query: 140 DLEEHQQMIERIGVTRQRQA----GFKRAVFVYYLIAQ----NTIDELVLQRLRTKS 188
           +  E  Q I R   +   Q     G + ++ V+ L+A+      +D ++ +    K 
Sbjct: 475 NYTETSQAIARGWRSNSHQDMIARGQEPSLRVHQLVAKPNNDGGVDLMMYKVSEEKD 531


>gi|148241073|ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
 gi|146411449|gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
          Length = 1748

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGA----------VYYDEEKHWKEVHDEKIKA 58
            R    DL+  + ++ N A    K   L   A           Y   +    E+       
Sbjct: 1297 RHAAIDLRLVDPDSDNEAD--NKLNLLVGNAFRIWSETAESSYTRTDGKPFELPGAAQMI 1354

Query: 59   LEVI--IEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEG 107
               +  I                +L RL          + + +     +    ++    G
Sbjct: 1355 FSDLGTISVEKRRGFSAYRWIRDELVRLGVPPGEIAFMQDYKKSEAKQRLFGDVR---AG 1411

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            K+  L     + G G+N Q     L    + W   + +Q   RI     RQ      + +
Sbjct: 1412 KVRFLIGSSDTMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIV----RQGNQHDEIDI 1467

Query: 168  YYLIAQNTIDELVLQRLRTKS 188
            +    + ++D  + Q    K+
Sbjct: 1468 FAYATEGSLDAQMWQNNERKA 1488


>gi|19387227|gb|AAL87144.1|AF479825_1 DEAD box RNA helicase Vasa [Oncorhynchus mykiss]
          Length = 396

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
             GA    E+   +     K   L  +++   +   +V          +           
Sbjct: 180 VGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNT 239

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +    R   +    + ++  G+ P+L A  +    GL+++   +I V F L  +++E+ 
Sbjct: 240 TSIHGDREQREREQALGDFRSGRCPVLVA-TSVAARGLDIKDVQHI-VNFDLPNNIDEYV 297

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 298 HRIGRTGRCG 307


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------- 85
             GA    E+   +     K   L  +++   +   +V          +           
Sbjct: 431 VGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNT 490

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +    R   +    + ++  G+ P+L A  +    GL+++   +I V F L  +++E+ 
Sbjct: 491 TSIHGDREQREREQALGDFRSGRCPVLVA-TSVAARGLDIKDVQHI-VNFDLPNNIDEYV 548

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 549 HRIGRTGRCG 558


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 35/168 (20%)

Query: 55  KIKALEVII----EKANAAPIIVAYHFNSDLARLQKAF------------------PQGR 92
           K++ L+ +I    E+   + IIV  ++     ++ +                     +G 
Sbjct: 341 KMEKLKDLIKKQLERKPDSKIIVFTNYRDTGKKIVEELRNLGVSAERFIGQASRGTDRGM 400

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  +    +  ++ G+  +L A  +    GL++    +++VF+          Q   R G
Sbjct: 401 SQKEQKEVLDRFSRGEFNVLVA-TSVGEEGLDVPE-VDLVVFYEPVPSAIRSIQ---RRG 455

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            T + + G    V +  L+A+ T DE      R K      + +A+K+
Sbjct: 456 RTGRHRPG---KVVI--LMAKGTRDEAYYWSSRRKEKG---MFDAIKR 495


>gi|219115952|ref|XP_002178771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409538|gb|EEC49469.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 67  NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPC-TIQEW-NEGKIPLLFAH 115
               I++       L  +         +     GR    +   +I  + N+ +  +    
Sbjct: 457 EGHKILIFSQMVKMLDLISEYCDLRDFRYERLDGRVRGTERQKSIDRFENDPESFIFLLS 516

Query: 116 PASCGHGLNLQYGG 129
             + G G+NL   G
Sbjct: 517 TRAGGVGINLTAAG 530


>gi|119385698|ref|YP_916753.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119376293|gb|ABL71057.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 634

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQNTIDEL 179
           GLNL +  + ++FFSL W+++   Q+I R+        + G +R + ++ ++ + + +  
Sbjct: 89  GLNLHHVADGIIFFSLPWEIDSIDQLIGRVDRLGATGERKGGRRVIDIWRILIEGSQETA 148

Query: 180 V 180
           +
Sbjct: 149 I 149


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARL---Q 85
           +  GA    E+  ++   ++K   L+ I+E+ N         + V     +D   +   +
Sbjct: 414 IVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSE 473

Query: 86  KAFPQG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +P       R   +    + ++  G++ +L A  A    GL+++   + ++ + L   
Sbjct: 474 NNYPTTSIHGDRLQRQREEALADFKSGRMSILVA-TAVAARGLDIKNVSH-VINYDLPKG 531

Query: 141 LEEHQQMIERIGVTRQR 157
           ++E+   I R G    R
Sbjct: 532 IDEYVHRIGRTGRVGNR 548


>gi|116669352|ref|YP_830285.1| helicase domain-containing protein [Arthrobacter sp. FB24]
 gi|116609461|gb|ABK02185.1| helicase domain protein [Arthrobacter sp. FB24]
          Length = 551

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDL----ARLQKAFPQGRT-LDKDPCTIQEWN 105
             + K   +E ++E+     ++V   +   L     RLQ    +G T + +       + 
Sbjct: 392 TSETKTAVVEQLVEQHRGEQLLVIGQYIDQLDELGERLQAPVIKGDTSVKERQKLFAAFR 451

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++  L          ++L      +     +   +E  Q + R+   +Q      RA 
Sbjct: 452 IGEVQTLVVS-KVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPKQ----DGRAA 506

Query: 166 FVYYLIAQNTIDELVLQRLRT 186
             Y L+A++T+D+    + + 
Sbjct: 507 RFYSLVARDTLDQDFAAKRQR 527


>gi|331250618|ref|XP_003337916.1| DNA repair protein rad5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309316906|gb|EFP93497.1| DNA repair protein rad5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 607

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +L A   + G G++L+    + +     W+    +Q ++R+      + G K
Sbjct: 559 ILLATIKTAGVGIDLRCAQKVYIM-EPTWNPAVEEQAVDRL-----YRIGQK 604


>gi|195497948|ref|XP_002096317.1| GE25128 [Drosophila yakuba]
 gi|194182418|gb|EDW96029.1| GE25128 [Drosophila yakuba]
          Length = 1259

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 13/101 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  A    +++       +  L++               
Sbjct: 1146 PDKETLITDAGKLFVLDTLLTRLKAKGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1205

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
              +      + ++     I +      + G G+NL     +
Sbjct: 1206 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTV 1246


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           D+K   L  ++E+ N   +IV         R+     +           RT  +    ++
Sbjct: 224 DQKSDLLRELLERVNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALK 283

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
            +  G+  +L A       GL++    + ++ + +    E++   I RIG T R    G 
Sbjct: 284 GFRNGRFEVLVA-TDIAARGLDIADVSH-VINYDVPQHPEDY---IHRIGRTGRAAATGD 338

Query: 162 KRAVFV 167
              + V
Sbjct: 339 AFTLMV 344


>gi|129282525|gb|ABO30254.1| SNF2 family N-terminal domain protein [Triticum aestivum]
          Length = 69

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +E     +  + G  + +     + ++T++E +LQ    K  + D
Sbjct: 1   VESQAQDQIHRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFD 45


>gi|218132347|ref|ZP_03461151.1| hypothetical protein BACPEC_00206 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992685|gb|EEC58687.1| hypothetical protein BACPEC_00206 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           + +     +E   GK  +L      CG G+N+Q     +      W     +Q   R   
Sbjct: 1   MHRGTHFFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREGR--- 57

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 58  -GIRQGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 100


>gi|118443614|ref|YP_877384.1| Snf2/Rad54 family helicase putative [Clostridium novyi NT]
 gi|118134070|gb|ABK61114.1| helicase, SNF2/RAD54 family, putative [Clostridium novyi NT]
          Length = 1041

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 28/153 (18%)

Query: 47  HWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCT 100
           +  E  D K++ L   ++       +I+   F      +          +   LD     
Sbjct: 605 NINEKKDAKLQMLINKLQWDLKGKKVIIFTEFKDTAKYIYNYIKNNINVEVAELDSSNKM 664

Query: 101 -----IQEW-----------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                +  +           NE +I +          G NLQ   NI++ + L W+  + 
Sbjct: 665 SKIKIVNRFAPKANNYELAINEKEIDV-LVSTDVLAEGQNLQD-CNIIINYDLSWNPVKI 722

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            Q   RI             +F+Y  + ++ ++
Sbjct: 723 IQREGRIDRITT----EFDKIFIYNFMPEDKLE 751


>gi|317476133|ref|ZP_07935385.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
            1_2_48FAA]
 gi|316907771|gb|EFV29473.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
            1_2_48FAA]
          Length = 1658

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T         + N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 1283 QFIQCAKTERARKKLFADMNSGRVRVLFGSTSMLGTGVNAQERAVAVHHLEIPWRPADME 1342

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +        V +Y    + T+D      L+ K  
Sbjct: 1343 QRNGRAVRKGNTVKLWGNNTVDVVIYG--TEKTLDAYKFNLLKNKQM 1387


>gi|331227997|ref|XP_003326666.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305656|gb|EFP82247.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 78

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             W+    +Q I+R+      + G +  + V      N+I+  + Q  R K+ + 
Sbjct: 3   PTWNPAVEEQAIDRL-----YRIGQQEQIQVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|302765559|ref|XP_002966200.1| hypothetical protein SELMODRAFT_407530 [Selaginella moellendorffii]
 gi|300165620|gb|EFJ32227.1| hypothetical protein SELMODRAFT_407530 [Selaginella moellendorffii]
          Length = 814

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 71  IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPAS 118
           I++A +F   L  ++               G  + +    ++ +N   G+  +      +
Sbjct: 601 IVIASNFTQTLDLIEAMCNEHSWKFVRLDGGTMISERQSLVERFNRRIGEASIFLLSSKA 660

Query: 119 CGHGLNL 125
            G GLNL
Sbjct: 661 GGTGLNL 667


>gi|320009544|gb|ADW04394.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 606

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFP-------QGRTLDKDPCTIQEWNEGKIPLLFAH 115
              A     +V   F   +  LQ            G T D++    +   +    +L ++
Sbjct: 432 ANAAAGRKTLVWTGFVRSITSLQALLAPFQPAAVHGGTPDREEELRRFREDPDCSVLISN 491

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA----VFVYYLI 171
           PA+ G G++L    +  V+    +      Q ++RI      + G        V V  L 
Sbjct: 492 PATLGEGISLHQVCHDAVYVDRDFQAGRFLQSLDRI-----HRLGLAPDTETRVTV--LT 544

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           A  ++D++V  RL  K      +L+
Sbjct: 545 AMGSVDDVVSMRLAEKLEFMGSILD 569


>gi|148656660|ref|YP_001276865.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568770|gb|ABQ90915.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 969

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQ-NTIDEL 179
           G+NLQ     +V + L W+    +Q   R+      + G     V V     + N +D  
Sbjct: 546 GVNLQSLFTAVVHYDLPWNPNRLEQREGRVD-----RYGQPAPRVRVIRFFGRDNPVDGA 600

Query: 180 VLQRLRTKSTI 190
           VL  L  K+  
Sbjct: 601 VLDVLLNKART 611


>gi|257486911|ref|ZP_05640952.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 665

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++V   +        R+++   Q               +   
Sbjct: 487 KEQALLDLCLAEKARNRKVLVYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 546

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 547 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 600

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 601 GQKQDVRV 608


>gi|325300601|ref|YP_004260518.1| helicase domain-containing protein [Bacteroides salanitronis DSM
            18170]
 gi|324320154|gb|ADY38045.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1671

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T        +  N G I +LF   +  G G+N Q     +    + W   + +
Sbjct: 1296 QFIQTAKTEKARKKIFEGMNNGTIRVLFGSTSMLGTGVNAQQRAVAVHHLEIPWRPADLE 1355

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            Q   R    G T +   G    + +Y    + T+D      LR K 
Sbjct: 1356 QRNGRAVRKGNTVKLWGGNVVDIIIYG--TEKTLDAYKFNLLRNKQ 1399


>gi|291303533|ref|YP_003514811.1| type III restriction protein res subunit [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572753|gb|ADD45718.1| type III restriction protein res subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 549

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDK-DPCTIQEWNEG 107
           D K+ A+E I+ K     ++V   +   L  L K       QG T  K        +  G
Sbjct: 394 DAKLDAVESIVGKHKGERVLVIGAYLDQLEDLSKHLDAPVVQGSTRTKQREELFAAFRSG 453

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ-RQAGFKRAVF 166
           ++  L          ++L      +     +   +E  Q + RI   +   +      V 
Sbjct: 454 ELTTLIVS-KVGNFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRILRPKSDGRGAHFYTV- 511

Query: 167 VYYLIAQNTID 177
               ++++T+D
Sbjct: 512 ----VSRDTVD 518


>gi|308068476|ref|YP_003870081.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           +K +AL  +I+  +    IV       +  L +A  +            + ++    +++
Sbjct: 226 QKFEALSRLIDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRK 285

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
           + +G I +L A       GL++  G   +V F L  D E +   + RIG T R  + G  
Sbjct: 286 FRDGSIDVLVA-TDVAARGLDV-SGVTHVVNFDLPQDPESY---VHRIGRTGRAGKEGEA 340

Query: 163 ----RAVFVYYL-----IAQNTIDEL----VLQRLRTK-STIQDLLLNALKK 200
                   + +L     + ++ I       + + L  K   I + LL A++ 
Sbjct: 341 WSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGKQRIIAERLLEAVES 392


>gi|260893204|ref|YP_003239301.1| helicase domain protein [Ammonifex degensii KC4]
 gi|260865345|gb|ACX52451.1| helicase domain protein [Ammonifex degensii KC4]
          Length = 953

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ     +V + L W+    +Q   R+    Q +A   +AV +Y     N +D  VL
Sbjct: 553 GVNLQDYFTAVVHYDLPWNPNRLEQREGRVDRFGQ-RAKKVKAVLLYG--RDNPVDGAVL 609

Query: 182 QRLRTKS 188
             L  K+
Sbjct: 610 DVLLRKA 616


>gi|307325245|ref|ZP_07604448.1| helicase domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306889049|gb|EFN20032.1| helicase domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 993

 Score = 41.8 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 25/129 (19%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP--------QGRTL------- 94
             + +K L+  I+    + A +++     + L  LQ   P        +G+T        
Sbjct: 447 FRQLVKVLKDEIKVGPGSDARVVIFSERRATLQILQDTLPSALGFAPSRGKTSGAVRQLH 506

Query: 95  -----DKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                D+   T++++     ++ +L     +   G+NL    + ++ + L W L   +Q 
Sbjct: 507 GGLSDDEQQRTVKDFGLASSELRVLLTGDIAA-EGVNLHRQCHQMIHYDLPWSLITIEQR 565

Query: 148 IERIGVTRQ 156
             RI    Q
Sbjct: 566 NGRIDRYGQ 574


>gi|167519020|ref|XP_001743850.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777812|gb|EDQ91428.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1673

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            R+  KD   I+ + +               GL+L +  +I +      D     Q+I R 
Sbjct: 1510 RSQQKDVHEIRRFRQDDQCAFLCLAQEGAVGLDLHFVTHIFLLEEPV-DKSLEAQVIARA 1568

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + G  + V V  L+   T+D+L+ +    +    +  + A + +
Sbjct: 1569 W-----RIGCNQVVHVQKLVMAETVDDLLWRINSGQDPAFEEDMAATQGD 1613


>gi|296280707|gb|ADH04649.1| unknown [Chondromyces crocatus]
          Length = 993

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER---- 150
           +      + +N    P++         GL+L      +V   L W+  + +Q + R    
Sbjct: 849 ESRERLREAFNTPLYPMILVANEVMQEGLDLHRHCRRIVHHDLAWNPAQLEQRVGRVDRI 908

Query: 151 --IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +      +    +   +Y L+ + TIDE + + ++++    + LL A
Sbjct: 909 GSLTTKLLARDPSTKLDILYPLVHR-TIDERLFRTVKSREKWLEFLLGA 956


>gi|50288805|ref|XP_446832.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526141|emb|CAG59763.1| unnamed protein product [Candida glabrata]
          Length = 718

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 26/176 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK------TVKCLQLANGAVYYDEEK------HWKE 50
           +Y K   +L  +  G  + A  + +        +K L L N  V+ D            +
Sbjct: 245 EYKKL-GQLTKEFDGVPVMALTATANDNIQEDILKILNLKNVVVFKDSLNRKNLYYEVVQ 303

Query: 51  VHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
            +   I+ +  +++   +    I+  +  +   ++ K   Q          G+T +    
Sbjct: 304 KNSRTIEYMTYLLKTEFHGQSGIIYCNSKASCEKVSKELNQANISSEFYHAGKTANSRLN 363

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           T ++W +G I ++ A  A  G G++ +     +  + +   +E + Q   R G   
Sbjct: 364 TQRKWQQGTIQVVCATIA-FGMGID-KENVRFVFHYDIPRSMEGYYQETGRAGRDG 417


>gi|314985619|gb|EFT29711.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
          Length = 552

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|221369955|ref|YP_002521051.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
 gi|221163007|gb|ACM03978.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
          Length = 990

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 35/187 (18%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFN 78
              A++     QLA  A      K  ++  D +++AL  I+     + +    I+    N
Sbjct: 325 TELAARGGTLAQLAEAA----RVKSLEDPGDSRLEALLDILSGQWCEDDERAFIIVCGDN 380

Query: 79  SDLARLQKAFPQ------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGH----- 121
             +  L+ A P+             R +  D   +   N  +I    A   S  +     
Sbjct: 381 PTIDMLRAALPRYFPSLVDGISVLRRPVATDVEGVT--NLREIQETLAPLLSGDNRLLLV 438

Query: 122 ------GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ 173
                 GLNL +  + ++FFSL W+++   Q+I R+        + G +R + ++ ++ +
Sbjct: 439 GDWVQAGLNLHHVADGIIFFSLPWEIDSIDQLIGRVDRLGATGERKGGRRVIDIWRILIE 498

Query: 174 NTIDELV 180
            + +  +
Sbjct: 499 GSQETAI 505


>gi|314980563|gb|EFT24657.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
          Length = 552

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|313806616|gb|EFS45123.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313817160|gb|EFS54874.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313821776|gb|EFS59490.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313824332|gb|EFS62046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|313826692|gb|EFS64406.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314926883|gb|EFS90714.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314961211|gb|EFT05312.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314987445|gb|EFT31536.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|314988958|gb|EFT33049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315082589|gb|EFT54565.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
 gi|315086301|gb|EFT58277.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|315087551|gb|EFT59527.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
 gi|327333533|gb|EGE75253.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
 gi|327445441|gb|EGE92095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328758685|gb|EGF72301.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 552

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|313765421|gb|EFS36785.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|313772592|gb|EFS38558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
 gi|313792945|gb|EFS41012.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313802605|gb|EFS43827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313810814|gb|EFS48528.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313814341|gb|EFS52055.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
 gi|313815175|gb|EFS52889.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313828480|gb|EFS66194.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313831933|gb|EFS69647.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313840243|gb|EFS77957.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314915936|gb|EFS79767.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314916965|gb|EFS80796.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314921485|gb|EFS85316.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314931191|gb|EFS95022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314954750|gb|EFS99156.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314958917|gb|EFT03019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314964361|gb|EFT08461.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314969460|gb|EFT13558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314974527|gb|EFT18622.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|314977279|gb|EFT21374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315078624|gb|EFT50655.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315081915|gb|EFT53891.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315097598|gb|EFT69574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315099814|gb|EFT71790.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|315101878|gb|EFT73854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
 gi|315106614|gb|EFT78590.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|315110404|gb|EFT82380.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327331551|gb|EGE73290.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327335058|gb|EGE76769.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
 gi|327447055|gb|EGE93709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327449909|gb|EGE96563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
 gi|327454752|gb|EGF01407.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
 gi|327456900|gb|EGF03555.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328755809|gb|EGF69425.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
 gi|328756588|gb|EGF70204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
 gi|328761680|gb|EGF75195.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 552

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|295130034|ref|YP_003580697.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|291376058|gb|ADD99912.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
          Length = 553

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 346 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 402

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 403 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 462

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 463 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 516

Query: 174 NTID 177
           +T+D
Sbjct: 517 DTVD 520


>gi|319426367|gb|ADV54441.1| ATP-dependent DNA helicase, RecQ family [Shewanella putrefaciens
           200]
          Length = 659

 Score = 41.5 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K      ++ + K+ ++ A  A  G G++ +     ++ + L   +E + Q I R G   
Sbjct: 279 KRQQVQHDFMQDKVQVVVATIA-FGMGID-KSNIRFVIHYDLPKSIENYSQEIGRAGRDG 336

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           Q        V +  L   NT++  V      +S I +L++  +K+E
Sbjct: 337 QH----SHCVTLANLDGMNTVENFVYGDTPERSGI-ELIIENIKQE 377


>gi|289428471|ref|ZP_06430157.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|289158443|gb|EFD06660.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
          Length = 553

 Score = 41.5 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 346 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 402

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 403 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 462

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 463 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 516

Query: 174 NTID 177
           +T+D
Sbjct: 517 DTVD 520


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 41.5 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------ 97
           W      K+ AL  I+E      IIV     +    L +           L+ D      
Sbjct: 238 WMVKGTHKLDALTRILEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKAR 297

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             TI  + +GKI +L A       GL+++   + ++ + +    E +   + RIG T R 
Sbjct: 298 ERTIDRFKKGKIDILVA-TDVAARGLDVERVSH-VINYDIPNGAESY---VHRIGRTGRA 352

Query: 157 RQAG 160
            +AG
Sbjct: 353 GRAG 356


>gi|257876564|ref|ZP_05656217.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC20]
 gi|257810730|gb|EEV39550.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC20]
          Length = 460

 Score = 41.5 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAY--------HFNSDLARLQKAFPQGRTLDKDPCT 100
            E   +K  AL   + +   A II           +       L   +  G   D+    
Sbjct: 205 VEQTTDKDAALADYLSRLGGAGIIYCSTRSKVEEVYNKLRQHYLVGYYHGGLASDQRKTL 264

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            Q++++ K+ LL A   + G G+N +     ++ + L   LE + Q I R G   ++   
Sbjct: 265 QQQFSQNKLKLLVA-TNAFGMGIN-KEDIRFVIHYDLPDSLENYSQEIGRAGRDGKQSNA 322

Query: 161 ----FKRAVFVYYLIAQNTIDELVL--QRLRTKS 188
                +    ++Y   +   +E +   + ++ K 
Sbjct: 323 ILLYQEHDEQIHYFFQRENKEERLALERMVQEKR 356


>gi|146293121|ref|YP_001183545.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
 gi|145564811|gb|ABP75746.1| ATP-dependent DNA helicase, RecQ family [Shewanella putrefaciens
           CN-32]
          Length = 659

 Score = 41.5 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K      ++ + K+ ++ A  A  G G++ +     ++ + L   +E + Q I R G   
Sbjct: 279 KRQQVQHDFMQDKVQVVVATIA-FGMGID-KSNIRFVIHYDLPKSIENYSQEIGRAGRDG 336

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           Q        V +  L   NT++  V      +S I +L++  +K+E
Sbjct: 337 QH----SHCVTLANLDGMNTVENFVYGDTPERSGI-ELIIENIKQE 377


>gi|120598802|ref|YP_963376.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
 gi|120558895|gb|ABM24822.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. W3-18-1]
          Length = 659

 Score = 41.5 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K      ++ + K+ ++ A  A  G G++ +     ++ + L   +E + Q I R G   
Sbjct: 279 KRQQVQHDFMQDKVQVVVATIA-FGMGID-KSNIRFVIHYDLPKSIENYSQEIGRAGRDG 336

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           Q        V +  L   NT++  V      +S I +L++  +K+E
Sbjct: 337 QH----SHCVTLANLDGMNTVENFVYGDTPERSGI-ELIIENIKQE 377


>gi|195158026|ref|XP_002019895.1| GL11965 [Drosophila persimilis]
 gi|194116486|gb|EDW38529.1| GL11965 [Drosophila persimilis]
          Length = 1266

 Score = 41.5 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQG 91
             +K        K+  L+ ++ +  A    +++       +  L++               
Sbjct: 1164 PDKETLITDAGKLFVLDTLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGS 1223

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              +      + ++     I +      + G G+NL     
Sbjct: 1224 SKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADT 1263


>gi|254283444|ref|ZP_04958412.1| RNA polymerase-associated protein HepA [gamma proteobacterium
           NOR51-B]
 gi|219679647|gb|EED35996.1| RNA polymerase-associated protein HepA [gamma proteobacterium
           NOR51-B]
          Length = 917

 Score = 41.5 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 27/168 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   + ELY +L  E                        D   HW E    +++  +V++
Sbjct: 419 YADHKTELYPELSTEESTWLA-----------------KDPRVHWLETTLRELRPQKVLV 461

Query: 64  EKANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCG 120
             ANA   +    +    A ++  AF +G TL +       +   EG    L        
Sbjct: 462 ICANAQTALALEQYLHLQAGIRCAAFHEGLTLVERDRAAAYFAEEEGGAQALICS-EIGS 520

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            G N Q+  + L+ F L  + +  +Q I R+      + G + AV ++
Sbjct: 521 EGRNFQF-AHHLICFDLPLNPDLVEQRIGRLD-----RIGQESAVNIH 562


>gi|134095189|ref|YP_001100264.1| putative helicase from plasmid origin [Herminiimonas
           arsenicoxydans]
 gi|133739092|emb|CAL62140.1| Conserved hypothetical protein, putative helicase [Herminiimonas
           arsenicoxydans]
          Length = 759

 Score = 41.5 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICREEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K +V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKLSVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|203454739|ref|YP_002225055.1| gp176 [Mycobacterium phage Myrna]
 gi|197311787|gb|ACH62145.1| gp176 [Mycobacterium phage Myrna]
          Length = 618

 Score = 41.5 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 33/201 (16%)

Query: 8   QRELYCDLQGENIEAFNSASK----TVKCLQLAN-------------GAVYYDEEKHWKE 50
           QRE +  +  E  +A           ++ LQ+                A    E  H  E
Sbjct: 379 QREAFEVITEEARKAVLGKGLDPGPYMRLLQMVAITPEALRVTEDQIAADIMAEHPHLAE 438

Query: 51  VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPC 99
            H  KI  L  +++   +     +   +     L  +         K +  G++      
Sbjct: 439 GHAPKIDLLNEMLDGIAEQYDQAVCFVHWTTGGLHLISPKLRVRHVKHWGTGQSRRLSQK 498

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +      + F    +   GL+ Q     ++      D +   Q  +RI        
Sbjct: 499 AVDTFKAQPNVVAFLSSDAGALGLSFQN-ARYVINIDPIRDYDLLTQRNKRIDRADSYLE 557

Query: 160 GFKRAVFVYYLIAQNTIDELV 180
           G       Y +I +++++E +
Sbjct: 558 GLTS----YVMITEDSVEERI 574


>gi|107102061|ref|ZP_01365979.1| hypothetical protein PaerPA_01003109 [Pseudomonas aeruginosa PACS2]
          Length = 759

 Score = 41.5 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICREEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K +V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKLSVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score = 41.5 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------DKDPC----TIQE 103
           +K + L  ++E    A  IV         R+     +          DK        ++ 
Sbjct: 238 DKRRLLADLLEDEAMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALES 297

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  G++  L A       G+++  G + ++ F L  + E +   + RIG  R  +AG  
Sbjct: 298 FRNGELRALVA-TDIAARGIDI-DGISHVINFDLPNEPESY---VHRIG--RTARAGTD 349


>gi|165975771|ref|YP_001651364.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|254789671|sp|B0BT63|RAPA_ACTPJ RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|165875872|gb|ABY68920.1| RNA polymerase associated protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score = 41.5 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
           G    D  + + EV   +K + L  +++       +V          +     Q      
Sbjct: 431 GGACTDVNQEFVEVTKFDKREKLLELLKTTGTDRTMVFVETKRLADFIAAFLCQEKVPTT 490

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               GR   +    + ++  GK P+L A  +    GL++    N +V F L  +++E+  
Sbjct: 491 SIHGGREQREREQALGDFRSGKCPVLVA-TSVAARGLDIPDVQN-VVNFDLPNNIDEYVH 548

Query: 147 MIERIGVTR 155
            I R G   
Sbjct: 549 RIGRTGRCG 557


>gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RT 93
           ++K ++     K + L   I + N   ++V         RL +   +           +T
Sbjct: 219 DQKSYRVDKSRKTEMLIKFIREGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKT 278

Query: 94  LDKDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     +  +  GK+ +L A   A+ G  + L      ++ + L    E++   + RIG
Sbjct: 279 QNARVKALAGFKSGKVRVLVATDIAARGLDIPLLP---YVINYELPNVPEDY---VHRIG 332

Query: 153 VT-RQRQAGF 161
            T R   +G 
Sbjct: 333 RTGRAGASGQ 342


>gi|307245128|ref|ZP_07527221.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254084|ref|ZP_07535931.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258539|ref|ZP_07540276.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854017|gb|EFM86229.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863009|gb|EFM94956.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867443|gb|EFM99294.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|294789356|ref|ZP_06754594.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
 gi|294482781|gb|EFG30470.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
          Length = 2270

 Score = 41.5 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 102  QEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + +N        ++         G+NLQ G   +    L W  +   Q   R      RQ
Sbjct: 1808 ERFNSDDEENGYVIVIANKKAEVGINLQKGCQAIHHLELNWTPDSITQRNGR----GIRQ 1863

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  V VY+  A  T D      +  KS   + +++  + E
Sbjct: 1864 GNTAEKVNVYFYEADGTFDTYRRTTIDRKSNWIESVMSKAENE 1906


>gi|229892402|gb|ACQ89838.1| helicase [Enterococcus faecalis]
          Length = 2727

 Score = 41.5 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 2378 SGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFPEV 2433

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + + T D  + Q + +K      ++ +
Sbjct: 2434 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2465


>gi|223997022|ref|XP_002288184.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975292|gb|EED93620.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2271

 Score = 41.5 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW------------DLEEHQQM 147
             + + ++ +  +L  H      GLNLQ   + L+ F+  +            D     Q 
Sbjct: 2161 DVTDEDKRRPRVLVLHFEHAA-GLNLQAECHNLILFTPLYIGDGGTTGDAVSDASTEMQA 2219

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I R+    Q     K  V VY +  +   DE  +     +       + 
Sbjct: 2220 IGRVYRPGQ----QKAQVNVYRIEVRGPADEECVDGQLIRRNTDMETIQ 2264


>gi|57506000|ref|ZP_00371924.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
 gi|57015800|gb|EAL52590.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
          Length = 1969

 Score = 41.5 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +++  G+I +L    A  G G+N+Q     L      W  + + Q   RI          
Sbjct: 1541 EKFKNGEIRILIGSTAKMGTGMNVQKRLVALHNLDCPWRPDGYIQRNGRIERQGNMFFEQ 1600

Query: 162  KRAV--FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +     +Y    + + D    Q + TK+   D +
Sbjct: 1601 DKNFKPKIYNYATEMSYDVKAYQIVETKAKAIDTI 1635


>gi|307260782|ref|ZP_07542469.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869508|gb|EFN01298.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|307249531|ref|ZP_07531518.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858386|gb|EFM90455.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|330834348|ref|YP_004409076.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
 gi|329566487|gb|AEB94592.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
          Length = 538

 Score = 41.5 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCT--IQ 102
            K +   K+  ++ I+E+     II+   +    +++ARL  A      + K      + 
Sbjct: 387 IKGLTKGKLVKIKEIVERERDKKIIIFTQYVEHANEIARLTGAKLLTGQMSKKERDLTLD 446

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           E+   K  +L         GL++    ++ +  +      ++ Q   R+G   +  +G K
Sbjct: 447 EFKNQKSGVLVL-TTVGDEGLDIPD-ASVGILVAGTSSRRQYVQ---RLGRLLRNNSGGK 501

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            AV +Y LIA+ T +E   Q    +ST  D L+
Sbjct: 502 VAV-LYELIAKGTSEE--YQSKVRRSTPFDSLI 531


>gi|14521782|ref|NP_127258.1| DNA repair protein RAD25 [Pyrococcus abyssi GE5]
 gi|5459002|emb|CAB50488.1| ERCC3/XPB TFIIH basal transcription factor complex helicase, XPB
           subunit homolog [Pyrococcus abyssi GE5]
          Length = 453

 Score = 41.5 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--- 99
           +E +        KI+ L  I+E+     II++  +N  +  + + F       K      
Sbjct: 300 EEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEER 359

Query: 100 --TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ EGK  +          G+++    ++ +  S      E  Q   R+G   + 
Sbjct: 360 VEILRKFREGKY-MAVVSSQVLDEGIDVPD-ASVGIIISGTGSPRELVQ---RLGRILRP 414

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRL 184
             G +RA  +Y LI   T +  +  R 
Sbjct: 415 APGKERA-ILYELITPGTTEVRISSRR 440


>gi|307103815|gb|EFN52072.1| hypothetical protein CHLNCDRAFT_36987 [Chlorella variabilis]
          Length = 589

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++      EW  G +P++ A  A  G G+N +     ++ +SL   LE + Q        
Sbjct: 304 EEREAVQAEWTNGDVPIIVATIA-FGMGIN-KCDVRFVLHYSLPKSLEGYLQA----SGG 357

Query: 155 RQRQAGFKRAVFVYY 169
           R  + G K +  +YY
Sbjct: 358 RAGRDGRKASCILYY 372


>gi|303252556|ref|ZP_07338719.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247307|ref|ZP_07529355.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648524|gb|EFL78717.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306856151|gb|EFM88306.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|265753913|ref|ZP_06089268.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235627|gb|EEZ21151.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 653

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +     +T         + N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 278 QFIQYAKTERARKKLFADMNSGRVRVLFGSTSMLGTGVNAQERAVAVHHLEIPWRPADME 337

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   R    G T +        V +Y    + T+D      L+TK  
Sbjct: 338 QRNGRAVRKGNTVKLWGNNTVDVVIYG--TEKTLDAYKFNLLKTKQM 382


>gi|228911643|ref|ZP_04075420.1| hypothetical protein bthur0013_57660 [Bacillus thuringiensis IBL
           200]
 gi|228847967|gb|EEM92844.1| hypothetical protein bthur0013_57660 [Bacillus thuringiensis IBL
           200]
          Length = 1096

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL-------- 94
           K K L+ I+  E +   P I+                 L ++ +  P  +          
Sbjct: 765 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVAILRTNTVK 824

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T    + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYKETFQAQMAQLIAQKNKAAEAM 919


>gi|224026703|ref|ZP_03645069.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
            18228]
 gi|224019939|gb|EEF77937.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
            18228]
          Length = 1659

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERTRKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 1390


>gi|190149588|ref|YP_001968113.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262908|ref|ZP_07544532.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|254789670|sp|B3H0F9|RAPA_ACTP7 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|189914719|gb|ACE60971.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871813|gb|EFN03533.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|154335774|ref|XP_001564123.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061157|emb|CAM38179.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 958

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +  D  +          + +    +  ++ G+  +      +C  G++L       VF 
Sbjct: 480 QWTRDHRKHAVRIDGRVPVQQRGDLLDAFHRGEARIAIIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D    +Q  +R+      + G +  V VYYL+
Sbjct: 539 ELPPDAAWMRQAEDRL-----HRPGQRDEVVVYYLL 569


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               + L  +    ++   N+ +KT          +Y  ++K       +K  AL  +++
Sbjct: 193 RNLAKGLVNNPVEISVTPRNATAKT------VEQYIYPVDQK-------QKTAALIHLVK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFA 114
           +     ++V         R+ K               ++       +  +  G++ +L A
Sbjct: 240 QNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  G+++    N +V F L    E++   + RIG T R    G 
Sbjct: 300 -TDIAARGIDIDQLPN-VVNFDLPNVPEDY---VHRIGRTGRAGANGQ 342


>gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
 gi|121791807|sp|Q2HG76|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1
 gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
          Length = 1134

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 19/197 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKE-VHDEKIKALEVI 62
             FQR +    +   +E FN   K     + L N  +   E  + +  V  E   + E I
Sbjct: 507 ESFQRMMALIERWMRMEEFNGHPKLTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEI 566

Query: 63  IEKANAAPIIVAYHF--NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +   N  P+I A  F   +D  R      +G    +   TI+++  G   +L A  +   
Sbjct: 567 VRLLNNQPLIRATVFVGQADSKR-----SEGMKQKQQIETIEKFKNGGFNVLVA-TSIGE 620

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL++    +++V +          Q + R G  R              L+ +   +E  
Sbjct: 621 EGLDIGQ-VDLIVCYDASASPIRMLQRMGRTGRKRAGNIVL--------LLMKGKEEEKF 671

Query: 181 LQRLRTKSTIQDLLLNA 197
           L+       +Q L+ N 
Sbjct: 672 LEAKDNYQKMQQLICNG 688


>gi|46143821|ref|ZP_00133947.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207798|ref|YP_001053023.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae L20]
 gi|189029406|sp|A3MZ32|RAPA_ACTP2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|126096590|gb|ABN73418.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|322514816|ref|ZP_08067835.1| RNA polymerase-associated protein RapA [Actinobacillus ureae ATCC
           25976]
 gi|322119198|gb|EFX91339.1| RNA polymerase-associated protein RapA [Actinobacillus ureae ATCC
           25976]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|307256343|ref|ZP_07538126.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865169|gb|EFM97069.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|59710877|ref|YP_203653.1| ATP-dependent helicase HepA [Vibrio fischeri ES114]
 gi|75354721|sp|Q5E881|RAPA_VIBF1 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|59478978|gb|AAW84765.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Vibrio fischeri ES114]
          Length = 952

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH----FNSDLARLQKAFPQGRTLDKDPC 99
           +   W +        LE++ E  N   +I+A         + A  ++   +G    +   
Sbjct: 482 DSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMS 541

Query: 100 TIQE--------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            I+           EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 IIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 + G KR + ++    Q T  EL+ +
Sbjct: 600 D-----RIGQKRDIEIHVPYLQGTSQELLAR 625


>gi|89098234|ref|ZP_01171119.1| hypothetical protein B14911_10747 [Bacillus sp. NRRL B-14911]
 gi|89087091|gb|EAR66207.1| hypothetical protein B14911_10747 [Bacillus sp. NRRL B-14911]
          Length = 1115

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 50/190 (26%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTI 101
           K K L+ IIE   A     IV                  + +L++   +   LD +    
Sbjct: 770 KEKKLQEIIEGEMAEGRKSIVYVRDTGSSVSERDIRPRLMQKLEEIGAKVCILDTNTTAT 829

Query: 102 Q---EWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               EW + KI      +          GL+L      L+++   W L    Q  +R   
Sbjct: 830 NTRSEWLKQKIEDEGYDVCIVSQELVKVGLDL-LCCPTLIYYQFSWSLFTINQSAKRSW- 887

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS-----------------------TI 190
               + G      ++YL  +N+  E + Q +  K+                        +
Sbjct: 888 ----RIGQTEECRLFYLAYENSFQEKMAQIIAMKNRATTAINGELSSDGLSAMLGDEGDL 943

Query: 191 QDLLLNALKK 200
           Q +L+ ++KK
Sbjct: 944 QSMLIESVKK 953


>gi|119714090|ref|YP_919232.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525999|gb|ABL79369.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 724

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 69  APIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEW----NEGKIPLL 112
             +++   +   +  L +            A  QG T  +D   I+         ++  +
Sbjct: 196 ERVVIFTEYAHTVDWLTRVLRQRGYVEDRLAVIQGSTKPEDREYIRSQFTADPAKELVRV 255

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                + G G++LQ   + LV F + ++    +Q I RI      + G      V++ +
Sbjct: 256 LLATDAAGEGIDLQTHCHRLVNFDIPFNPSRLEQRIGRID-----RYGQTDEPQVFHFV 309


>gi|119383720|ref|YP_914776.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119373487|gb|ABL69080.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 883

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWN 105
            +I+ L  I  +  AA  I+ +    +   L+KA P   T        LD+    I ++ 
Sbjct: 320 ARIEKLMEIRAEDPAAHRIIWHDLEDERRALEKAVPGIVTITGNGSQKLDRREELIGDFA 379

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++  L A P   G G NLQ      VF  +     +  Q I R+      + G     
Sbjct: 380 DGRVQELGAKPVMLGSGTNLQRHCAWHVFLGIGHKFNDFIQAIHRLL-----RFGQPADS 434

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               LI     +  + + L  K    + ++  +
Sbjct: 435 VRLDLIYTEA-EREIRRSLERKWRQHNEMVQKM 466


>gi|307694007|ref|ZP_07636244.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 1314

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
            +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 893  TLDNPLLHALEGAVPLPEQESAFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 947

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 948  KELFSKVRT-------------GQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 994

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q   RI    +RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 995  AQRKGRI----ERQGNSNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1043


>gi|303249526|ref|ZP_07335733.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251848|ref|ZP_07533749.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651600|gb|EFL81749.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860540|gb|EFM92552.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           D+      +  EG    +    +
Sbjct: 520 ALEQILREREAIRSAVFHEKMSIVER-----------DRASAYFAQMEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  N LV F+L  + +  +Q I R+      + G K  + ++
Sbjct: 567 IGSEGRNFQFASN-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIH 611


>gi|330824496|ref|YP_004387799.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329309868|gb|AEB84283.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 760

 Score = 41.5 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 582 KERELIEICKQEKAAGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 641

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 642 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 695

Query: 160 GFKRAVFVYYL 170
           G K  V V YL
Sbjct: 696 GQKLPVRVIYL 706


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score = 41.5 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
              D KI+ L  +I + N   ++V  ++      + +               R+      
Sbjct: 226 VDEDRKIELLSELIGRKNWQQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+ EGK+ +L A       GL++Q G   +V + L +  E++   + RIG  R  +A
Sbjct: 286 ALKEFKEGKLRVLVA-TDVAARGLDIQ-GLPHVVNYDLPFLAEDY---VHRIG--RTGRA 338

Query: 160 G-FKRAVF 166
           G    AV 
Sbjct: 339 GLQGHAVS 346


>gi|291514477|emb|CBK63687.1| Helicase conserved C-terminal domain [Alistipes shahii WAL 8301]
          Length = 1045

 Score = 41.5 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR- 155
                   NEGKI +LF      G G+N Q     +    + W   + +Q   R      
Sbjct: 607 RQAMFDAMNEGKIRVLFGSTQKLGTGVNAQKRIVCMHHLDIPWRPMDLEQRNGRGARKGN 666

Query: 156 ---QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +  AG K   +VY ++   T+D   L  L  K       ++ LK+  + 
Sbjct: 667 IVAKEYAGNKVKAYVYAVL--RTLDAYKLNLLHNKQ----QFIDQLKRNRLG 712


>gi|18656494|gb|AAL77795.1|AF389451_2 putative NTPase [Tiger frog virus]
          Length = 948

 Score = 41.5 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 19/108 (17%)

Query: 99  CTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +Q +N         I LL         GL  +   + ++  +  W+  E  Q I R  
Sbjct: 436 KIVQRFNHEDNVDGAYISLLLGS-RVVAEGLTFKEVRHTVIL-TPHWNYTETAQAIARSW 493

Query: 153 VTRQR----QAGFKRAVFVYYLI-------AQNTIDELVLQRLRTKST 189
                      G   AV V+ L+       A  +ID  +      K  
Sbjct: 494 RAGSHDRLKARGEAVAVTVHRLVAVPRGRDAPRSIDSDMYAVSEVKDK 541


>gi|218781622|ref|YP_002432940.1| ATP-dependent DNA helicase, RecQ family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763006|gb|ACL05472.1| ATP-dependent DNA helicase, RecQ family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 642

 Score = 41.5 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
             +K +AL+ II     AP IV         ++ +   +          G   ++     
Sbjct: 214 DSQKDQALKDIIANKPQAPTIVYATRQKTAEQVAEFLKKQGFAAKAYHAGMRNEEREAVQ 273

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+ EGK+ ++ A  A  G G++       ++ + L   LE + Q I R G   +     
Sbjct: 274 NEFMEGKVHVVAATIA-FGMGIDKSD-IRRVIHYDLPKSLEGYSQEIGRAGRDGRPALCQ 331

Query: 162 KRA 164
              
Sbjct: 332 ALP 334


>gi|154486248|ref|ZP_02027655.1| hypothetical protein BIFADO_00051 [Bifidobacterium adolescentis
           L2-32]
 gi|154084111|gb|EDN83156.1| hypothetical protein BIFADO_00051 [Bifidobacterium adolescentis
           L2-32]
          Length = 439

 Score = 41.5 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PC 99
           +  KE   +++     ++        I+    N +   L +  P    +           
Sbjct: 275 RVRKETLVDRVSRCVDLVNNEPEEQWIIWAGLNDEADMLNRLIPGSVNVKGSMSPEDKAK 334

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              ++ +G IP+L    +    GLN Q     + F  L    E + Q I R     Q++
Sbjct: 335 AFLDFADGNIPVLITKGSMASFGLNWQNCA-RMAFCGLNDSWESYYQSIRRCYRFGQKR 392


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score = 41.5 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
             GA     +  ++    +K + L  I+ ++ A   +V      +   L     +     
Sbjct: 571 VGGACSDVTQHFFQVDRQQKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPT 630

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    ++++ +GK P+L A  +    GL++    + ++ + L   ++E+ 
Sbjct: 631 TSIHGDRLQREREEALRDFKQGKAPILIA-TSVAARGLDIPNVKH-VINYDLPQSIDEYV 688

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 689 HRIGRTGRCG 698


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score = 41.5 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 471 VGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLST 530

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F L   ++E+ 
Sbjct: 531 TSIHGDREQREREKALSDFRTGQCPVLVA-TSVAARGLDIEQVQH-VVNFDLPSSIDEYV 588

Query: 146 QMIERIGVTRQRQ 158
             I R G     +
Sbjct: 589 HRIGRTGRCGNIR 601


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score = 41.5 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 460 VGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLST 519

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F L   ++E+ 
Sbjct: 520 TSIHGDREQREREKALSDFRTGQCPVLVA-TSVAARGLDIEQVQH-VVNFDLPSSIDEYV 577

Query: 146 QMIERIGVTRQRQ 158
             I R G     +
Sbjct: 578 HRIGRTGRCGNIR 590


>gi|228918899|ref|ZP_04082284.1| hypothetical protein bthur0012_60020 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228840701|gb|EEM85958.1| hypothetical protein bthur0012_60020 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1096

 Score = 41.5 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRT--------- 93
           K K L+ I+  E +   P I+                 L ++ +  P  +          
Sbjct: 765 KEKKLQEILQTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVSILRTNTVA 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      ++F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVSSGVNVIICSQELVKVGLDL-LATPTIIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T    + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYKETFQAQMAQLIAQKNKAAEAM 919


>gi|312218557|emb|CBX98502.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1047

 Score = 41.5 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 68  AAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
            A  I+   F+  L  L+ A   F  G +   +   I  +  +  +        S   GL
Sbjct: 830 GAKSIIFSQFSDFLVVLRGALRSFKIGASSIVERDGIARFKSDPSVETFLLDAKSDSSGL 889

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           NL      +       +     Q I R+      + G KRA  +Y +  +  ++
Sbjct: 890 NL-VNATYVFLCEPLINPALELQAIARV-----HRIGQKRA--IYEISVKRRLE 935


>gi|221064761|ref|ZP_03540866.1| DEAD-like helicase [Comamonas testosteroni KF-1]
 gi|220709784|gb|EED65152.1| DEAD-like helicase [Comamonas testosteroni KF-1]
          Length = 759

 Score = 41.5 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKD 97
             K + L  I   EKA    ++    +        RL+    Q               + 
Sbjct: 579 SPKERELIDICREEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR 638

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       
Sbjct: 639 EDWIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW----- 692

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + G K +V V YL    +     L+ +  K  +   
Sbjct: 693 RIGQKLSVRVMYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|116872742|ref|YP_849523.1| SNF2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741620|emb|CAK20744.1| SNF2 family domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 399

 Score = 41.5 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E +I        I+   +      LQ+AFP  +                  
Sbjct: 266 LSSEKFTITESLI-SGKEHSTIIFCKYKQSEKALQEAFPNVK------------------ 306

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ   N +++F   +D  +  Q   RI      + G  R  + + L
Sbjct: 307 --VTTFAKSSYGLNLQT-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQMRDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D ++   +  K+     LL   KKE
Sbjct: 359 SGNVGLDTIIDTNISKKTN----LLQEFKKE 385


>gi|322798230|gb|EFZ20022.1| hypothetical protein SINV_13561 [Solenopsis invicta]
          Length = 135

 Score = 41.5 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K+  +VY  +A  T++E +  R  TK ++   +++
Sbjct: 22  RFGQKKPCYVYRFLAAKTMEEKIYNRQVTKLSLSCRVVD 60


>gi|197333950|ref|YP_002155029.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio fischeri MJ11]
 gi|254789700|sp|B5FGE9|RAPA_VIBFM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|197315440|gb|ACH64887.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio fischeri MJ11]
          Length = 969

 Score = 41.5 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH----FNSDLARLQKAFPQGRTLDKDPC 99
           +   W +        LE++ E  N   +I+A         + A  ++   +G    +   
Sbjct: 482 DSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMS 541

Query: 100 TIQE--------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            I+           EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 IIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 + G KR + ++    Q T  EL+ +
Sbjct: 600 D-----RIGQKRDIEIHVPYLQGTSQELLAR 625


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score = 41.5 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFP-- 89
           G+   +  +  + V D +K   L  I+        ++               + + FP  
Sbjct: 423 GSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPAT 482

Query: 90  ---QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT  +    ++ +  GK P+L A  A    GL++    + ++ + L  D++++  
Sbjct: 483 SIHGDRTQRERERALELFRNGKCPILVA-TAVAARGLDIPNVTH-VINYDLPTDIDDY-- 538

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  +AG  
Sbjct: 539 -VHRIG--RTGRAGNT 551


>gi|319945388|ref|ZP_08019649.1| helicase domain protein [Lautropia mirabilis ATCC 51599]
 gi|319741381|gb|EFV93807.1| helicase domain protein [Lautropia mirabilis ATCC 51599]
          Length = 945

 Score = 41.1 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELV 180
           G+NLQ+    +V + L W+   H+Q   RI    Q        V    L  + N +D  V
Sbjct: 549 GINLQHLFTAVVHYDLTWNPTRHEQREGRIDRFGQ----QAEEVRCTMLYGEDNPVDGFV 604

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L  +  K+        A+++E
Sbjct: 605 LNVILRKA-------EAIRRE 618


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score = 41.1 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 38  GAVYYDEEKHWKEVH-DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
           G    D  ++  EV  D+K + L  I+ ++     +V      +   L     Q      
Sbjct: 518 GGACTDVAQYVHEVPRDQKRQKLCDILSESGTDKTLVFVEQKRNADFLATYLSQSGFPTT 577

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFA-HPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                R   +    ++++  G+ P+L A   A+ G  + L      ++ + L   ++E+ 
Sbjct: 578 SIHGDRLQQEREEALRDFKTGRAPILVATSVAARGLDIPLVK---HVINYDLPQSIDEYV 634

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 635 HRIGRTGRCG 644


>gi|254884231|ref|ZP_05256941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837024|gb|EET17333.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1658

 Score = 41.1 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T  +      + N G + +LF   +  G G+N Q     +    + W   + +
Sbjct: 1289 RFIQTAKTEQERKKLFTDMNNGTVRVLFGSTSMLGTGVNAQQRAVAVHHLEVPWRPADLE 1348

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            Q   R    G T +   G    + +Y    + T+D      LR K 
Sbjct: 1349 QRNGRAVRKGNTVKFWGGNVVDIIIYG--TEKTLDAYKFNLLRNKQ 1392


>gi|327455607|gb|EGF02262.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    +E+         + +E   S S++ +   +A      D           K K 
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESDR---MACAMAEPDVRYRMAATLPIKNKV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLF 113
           +  ++E+    P +V   +   L  L          G T       I Q++ EG+I LL 
Sbjct: 402 VRDLVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   ++           Y ++++
Sbjct: 462 VS-KIANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|296131110|ref|YP_003638360.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022925|gb|ADG76161.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 1045

 Score = 41.1 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              AR  +A    +T+ ++      +N    P + A  +    GL+     + +V ++L 
Sbjct: 852 HFAARFGRAQTDEKTVMRESTVRAAFNSPFRPFVLASTSVGQEGLDFHTYSHAVVHWNLP 911

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +  + +Q   R+   +      ++ V V +
Sbjct: 912 GNPVDLEQREGRVHRYKGHAV--RKNVAVLH 940


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score = 41.1 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 33/170 (19%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKALEVI 62
            +  + L       ++   N+A+ TVK                W      ++K   L  +
Sbjct: 193 RELAKGLVNQPVEISVTPRNAAANTVK---------------QWICPVDKNQKSALLIQL 237

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLL 112
           I++ +   ++V         RL K+  Q                    + ++  G++ +L
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
            A       GL++      +V F L    E++   + RIG T R    G 
Sbjct: 298 VA-TDIAARGLDIDQLPQ-VVNFDLPNVPEDY---VHRIGRTGRAGALGQ 342


>gi|319902431|ref|YP_004162159.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417462|gb|ADV44573.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 466

 Score = 41.1 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 12/122 (9%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLD 95
           +       +K++ L  ++        +V  ++   + R+            AF  G    
Sbjct: 234 QRVISPEKDKLETLYRLLCVLGNHSTLVFVNYRESVERVAAYLKSKKFPCDAFHGGMEQA 293

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + ++  G  P+          GL++  G + +V + L  + E       R     
Sbjct: 294 DRERALYKFRNGSCPV-LISTDLAARGLDI-PGIDNVVHYHLPVNEEAFTHRNGRTARWE 351

Query: 156 QR 157
            R
Sbjct: 352 AR 353


>gi|300710310|ref|YP_003736124.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
           B3]
 gi|299123993|gb|ADJ14332.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
           B3]
          Length = 599

 Score = 41.1 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 29/189 (15%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
           +  D++   +   N A+++         AV + E +     +  K+  +  ++E      
Sbjct: 416 MEPDVEIRYVPWRNEAAESEY-----ASAVGH-ERRQVAASNPAKLDEIRRLLEAHAGEK 469

Query: 71  IIVAYHFN----SDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            ++   +     +    L+  F  G+T   K    + E+  G   +L         G++L
Sbjct: 470 TLIFVDWIDQGEAYAEDLEIPFLSGQTRYAKRERLLSEFRHGTREVLLVS-RVGDEGIDL 528

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV---FVYYLIAQNTIDE---- 178
                 +V   L            R G  R  +    R V    VY L  + T +E    
Sbjct: 529 PAATVAIVASGLGGS--------RRQGSQRAGRT--MRPVGGAQVYMLATRGTEEEEFVR 578

Query: 179 LVLQRLRTK 187
             L+ L+ K
Sbjct: 579 DQLRHLQRK 587


>gi|282853546|ref|ZP_06262883.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282582999|gb|EFB88379.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|314982316|gb|EFT26409.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315092642|gb|EFT64618.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
 gi|315104630|gb|EFT76606.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 11/181 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y    +E+         +         +  ++A      D           K K +  
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRD 404

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
           ++E+    P +V   +   L  L          G T       I Q++ EG+I LL    
Sbjct: 405 LVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLVVS- 463

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                 ++L      +     +   +E  Q + R+   ++           Y +++++T+
Sbjct: 464 KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTV 518

Query: 177 D 177
           D
Sbjct: 519 D 519


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score = 41.1 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K  R          + A N+ + T    Q+A           +K   D K  A+  +++
Sbjct: 213 RKLGRSYLNQPVEIEVAARNATATT--ITQIA-----------YKMSSDAKRAAVVHLVK 259

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTL------DKDPCT----IQEWNEGKIPLLFA 114
                 +IV  +     ARL +   +          DK        ++ +  G + +L A
Sbjct: 260 SRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVLVA 319

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                  GL++  G   ++ + L ++ E++   + RIG  R  +AG
Sbjct: 320 -TDVAARGLDV-AGVPCVINYDLPYNAEDY---VHRIG--RTGRAG 358


>gi|314965180|gb|EFT09279.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315093939|gb|EFT65915.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|327329470|gb|EGE71230.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 11/181 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y    +E+         +         +  ++A      D           K K +  
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRD 404

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
           ++E+    P +V   +   L  L          G T       I Q++ EG+I LL    
Sbjct: 405 LVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLVVS- 463

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                 ++L      +     +   +E  Q + R+   ++           Y +++++T+
Sbjct: 464 KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTV 518

Query: 177 D 177
           D
Sbjct: 519 D 519


>gi|314922095|gb|EFS85926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 11/181 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y    +E+         +         +  ++A      D           K K +  
Sbjct: 345 KRYDAPWKEIEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRD 404

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTI-QEWNEGKIPLLFAHP 116
           ++E+    P +V   +   L  L          G T       I Q++ EG+I LL    
Sbjct: 405 LVERHRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQIDLLVVS- 463

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                 ++L      +     +   +E  Q + R+   ++           Y +++++T+
Sbjct: 464 KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTV 518

Query: 177 D 177
           D
Sbjct: 519 D 519


>gi|209524916|ref|ZP_03273461.1| type III restriction protein res subunit [Arthrospira maxima
           CS-328]
 gi|209494565|gb|EDZ94875.1| type III restriction protein res subunit [Arthrospira maxima
           CS-328]
          Length = 493

 Score = 41.1 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----CT 100
           K      D K++ L  II + +    ++    N+ + R+ + F       + P       
Sbjct: 314 KEIALCTDGKLRILADIISQNHPERTLIFTVDNTTVYRISQDFLIPAITHQTPVKERHQI 373

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + ++ +G+   L A       G+++     I +  S      E+ Q   R+G   ++ + 
Sbjct: 374 LDKFRQGEYRTLVAS-HVLNEGVDVPD-AKIAIILSGTGSEREYIQ---RLGRVLRKGSQ 428

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRT 186
             +   +Y +I +NT +E   QR R 
Sbjct: 429 TGKRAVLYEVITENTSEEQTSQRRRG 454


>gi|89266515|gb|ABD65549.1| hypothetical protein [Ictalurus punctatus]
          Length = 147

 Score = 41.1 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 22/153 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK--IKALEVIIE-- 64
           +E   +   E +E         + L++A      D E            +  +E  +E  
Sbjct: 1   KEFVTEADAEVLEHSGKIVLLFEILRMA-----EDVEDKVLVFSQSLISLDLIEDFLELA 55

Query: 65  ---KANAAPIIVAY-----HFNS-DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
              K    P    Y      F + D  RL  +     T  K      + +  +  L    
Sbjct: 56  GRAKEEGKP--SPYKGEGKWFRNIDYYRLDGST-NAITRKKWAEEFNDTSNVRGRLFLIS 112

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +   G+NL    N ++ F   W+     Q I
Sbjct: 113 TRAGSLGINL-VAANRVIIFDASWNPSYDIQSI 144


>gi|308051050|ref|YP_003914616.1| SNF2-related protein [Ferrimonas balearica DSM 9799]
 gi|307633240|gb|ADN77542.1| SNF2-related protein [Ferrimonas balearica DSM 9799]
          Length = 956

 Score = 41.1 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  +         V +   S L R                      EG   +L     
Sbjct: 508 QLEEALRSREGIMAGVFHEGMSILER------------DKAAAFFAQQEGGAQVLICS-E 554

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + L+ F L  + +  +Q I R+      + G  + V ++
Sbjct: 555 IGSEGRNFQF-AHHLIMFDLPQNPDLLEQRIGRLD-----RIGQTQDVQIH 599


>gi|225871498|ref|YP_002752856.1| hypothetical protein BCA_A0009 [Bacillus cereus 03BB102]
 gi|225785551|gb|ACO25769.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 1096

 Score = 41.1 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRT--------- 93
           K K L+ I+  E +   P I+                 L ++ +  P  +          
Sbjct: 765 KEKKLQEILQTEISEGRPTIIYVSDTGSTVKERDIQPRLQKVAEQVPGAKVSILRTNTVA 824

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 825 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T    + Q +  K+   + +
Sbjct: 881 --HWRIGQTKQCRTFYLGYKETFQAQMAQLIAQKNKAAEAM 919


>gi|332036098|gb|EGI72574.1| RNA polymerase associated protein RapA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 964

 Score = 41.1 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT 100
           D    W     + +K  +V++  A A   I       +   ++ +        +++D   
Sbjct: 484 DPRVDWLIDTLKTLKREKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERDRAA 543

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               +E     +         G N Q+  + LV F L  + +  +Q I R+      + G
Sbjct: 544 AFFADEYDNAQILLCSEIGSEGRNFQFS-HHLVLFDLPLNPDLLEQRIGRLD-----RIG 597

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + V ++    +NT  E++L+
Sbjct: 598 QTQDVNIHVPYFENTAQEVLLR 619


>gi|228924854|ref|ZP_04088009.1| hypothetical protein bthur0011_57500 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834772|gb|EEM80256.1| hypothetical protein bthur0011_57500 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1112

 Score = 41.1 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 27/161 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR---------T 93
           K K L+ I+  E +   P I+                 L ++ +  P  +         T
Sbjct: 781 KEKKLQEILHTEISEGRPTIIYVSDTGSTVKERDVQPRLQKVAEQVPGAKVSILRTNTVT 840

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++E     + ++         GL+L      L+F+ L + L    Q   R   
Sbjct: 841 PPKRSAWLKEQVNSGVNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR--- 896

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + G  +    +YL  + T    + Q +  K+   + +
Sbjct: 897 --HWRIGQTKQCRTFYLGYKETFQAQMAQLIAQKNKAAEAM 935


>gi|224371108|ref|YP_002605272.1| RapA [Desulfobacterium autotrophicum HRM2]
 gi|223693825|gb|ACN17108.1| RapA [Desulfobacterium autotrophicum HRM2]
          Length = 905

 Score = 41.1 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV------ 73
           +   ++     +C          D++     V   KI+ L+ +++      +++      
Sbjct: 396 VPKTDTTVALGRCDAPVASLSMADDD---PGVFFAKIEWLKGLLKSLKREKVLLICATSE 452

Query: 74  -AYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            A    + LA L       F Q  TL +   +   + E     L         G N Q+ 
Sbjct: 453 KAAAIETALATLITMKIARFTQDMTLVQRDRSAAWFAEPLGAELMICSEIGSEGRNFQF- 511

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + LV F L  + E  +Q I R+      + G    + ++
Sbjct: 512 AHHLVMFDLPDNPELVEQRIGRLD-----RIGQHHPIVIH 546


>gi|253572782|ref|ZP_04850182.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304382595|ref|ZP_07365089.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325858280|ref|ZP_08172557.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A]
 gi|251837682|gb|EES65773.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304336220|gb|EFM02462.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325483087|gb|EGC86071.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A]
          Length = 1946

 Score = 41.1 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1517 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1576

Query: 152  GVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETI 203
                    +  AG    V +Y    + ++D      L  K T    L + A++  TI
Sbjct: 1577 VRAGNEIAKHFAGNNVDVIIY--AVEKSLDSYKFNLLHCKQTFISQLKSGAMEARTI 1631


>gi|301155358|emb|CBW14824.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Haemophilus parainfluenzae
           T3T1]
          Length = 920

 Score = 41.1 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVA----------YHFNSDLARLQKA--FPQGRTLDKDPCT 100
           DEKI  L   ++      I+V                +   ++ A    +   +++D   
Sbjct: 443 DEKIHWLIDFLKSHRNEKILVICKTAQTAIQLEQILREKEAIRSAVFHERMSIIERDRAA 502

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               +      +    +    G N Q+  + LV F L  + +  +Q I R+      + G
Sbjct: 503 AYFADTDNGAQVLLSSSIGSEGRNFQFACH-LVLFDLPENPDLLEQCIGRLD-----RIG 556

Query: 161 FKRAVFVY 168
             R V +Y
Sbjct: 557 QTRDVQIY 564


>gi|292655877|ref|YP_003535774.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291370623|gb|ADE02850.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 470

 Score = 41.1 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYH---FNSDLAR--LQKAFPQGRTLDKDPCTI 101
                  +K+  L+ ++++ +   +IV      F  D++R  +          D+    +
Sbjct: 324 RIARTASKKLDTLDNLLKRHHDDRVIVFTANNDFAYDISREFILPCITHQTDTDERTEIL 383

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+  +L         G+++    N+ +  S      ++ Q + RI      +   
Sbjct: 384 DRFRSGEYSMLATS-QVLDEGIDV-PAANVGIILSGSASKRQYAQRLGRILRPTDDR--- 438

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRT 186
            +   +Y +I  +T++  V QR R 
Sbjct: 439 -QPARLYEIITTDTMETYVSQRRRE 462


>gi|16800416|ref|NP_470684.1| hypothetical protein lin1348 [Listeria innocua Clip11262]
 gi|16413821|emb|CAC96579.1| lin1348 [Listeria innocua Clip11262]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK   +E +I     A  I+   +      L KAFP                  KI 
Sbjct: 266 LSSEKFTIVESLI-AGKEATTIIFCKYKRSEEALIKAFPNV----------------KIT 308

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQY  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 309 TF----AKSSYGLNLQY-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D L+   +  K+     LL+  KKE
Sbjct: 359 SGNVGLDNLIDSNISKKT----SLLHEFKKE 385


>gi|46907537|ref|YP_013926.1| SNF2 family protein [Listeria monocytogenes str. 4b F2365]
 gi|47094291|ref|ZP_00231996.1| SNF2 family domain protein [Listeria monocytogenes str. 4b H7858]
 gi|254824630|ref|ZP_05229631.1| SNF2 family protein [Listeria monocytogenes FSL J1-194]
 gi|254852638|ref|ZP_05241986.1| SNF2 family protein [Listeria monocytogenes FSL R2-503]
 gi|300765449|ref|ZP_07075431.1| hypothetical protein LMHG_11489 [Listeria monocytogenes FSL N1-017]
 gi|46880805|gb|AAT04103.1| SNF2 family domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017335|gb|EAL08163.1| SNF2 family domain protein [Listeria monocytogenes str. 4b H7858]
 gi|258605954|gb|EEW18562.1| SNF2 family protein [Listeria monocytogenes FSL R2-503]
 gi|293593868|gb|EFG01629.1| SNF2 family protein [Listeria monocytogenes FSL J1-194]
 gi|300513886|gb|EFK40951.1| hypothetical protein LMHG_11489 [Listeria monocytogenes FSL N1-017]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 230 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 276 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 315 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 368

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 369 DTNISKKT----SLLQEFKKE 385


>gi|257867656|ref|ZP_05647309.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC30]
 gi|257873985|ref|ZP_05653638.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC10]
 gi|257801739|gb|EEV30642.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC30]
 gi|257808149|gb|EEV36971.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC10]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAY--------HFNSDLARLQKAFPQGRTLDKDPCT 100
            E   +K  AL   + +   A II           +       L   +  G   D+    
Sbjct: 205 VEQTTDKDAALADYLSRLGGAGIIYCSTRSKVEEVYNKLRQRYLVGYYHGGLASDQRKTL 264

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            Q++++ K+ LL A   + G G+N +     ++ + L   LE + Q I R G   ++   
Sbjct: 265 QQQFSQNKLKLLVA-TNAFGMGIN-KEDIRFVIHYDLPDSLENYSQEIGRAGRDGKQSNA 322

Query: 161 ----FKRAVFVYYLIAQNTIDELVL--QRLRTKST 189
                +    ++Y   +   +E +   + ++ K  
Sbjct: 323 ILLYQEHDEQIHYFFQRENKEERLALERMVQEKRK 357


>gi|42560912|ref|NP_975363.1| hypothetical protein MSC_0370 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492409|emb|CAE77005.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320833|gb|ADK69476.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 514

 Score = 41.1 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
                +   A + A+  ++  Q+  G       K +      ++  LE ++        I
Sbjct: 306 LSYPDDKWIAGDDATFWLRTRQIPIGF--QGNSKDYYWFDYSRLNKLEQLLTDKID-NYI 362

Query: 73  VAYHFNSDLARLQKAFPQGRTL----DKDPCTIQEW-----------NEGKIPLLFAHPA 117
           + Y+++ +   + K   +        + +   I  +           N  K  ++ A+  
Sbjct: 363 IFYNYDPEFDEIYKICKKLDYKIDIWNGNKKNITNYLEFLNLDQNNKNSSKKRVIIANYF 422

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S   G N Q     ++F      L  +   I    + R  + G K  +  Y  +  N +D
Sbjct: 423 SASTGNNWQEYDKTILF-----SLATYGYHI--QALKRNHRIGTKNTITYYLFLQDNYLD 475

Query: 178 ELVLQRLRTKS 188
           + +   ++ + 
Sbjct: 476 KSMWGSIQKRQ 486


>gi|221067005|ref|ZP_03543110.1| SNF2-related protein [Comamonas testosteroni KF-1]
 gi|220712028|gb|EED67396.1| SNF2-related protein [Comamonas testosteroni KF-1]
          Length = 797

 Score = 41.1 bits (95), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 23/155 (14%)

Query: 55  KIKALEVII--EKANAAPIIVAYHF---NSDLARLQKAFPQGRTLD-----------KDP 98
           K   L  +   EKA    ++V   +       ARL+    + R              K  
Sbjct: 618 KEAKLIELCMDEKALGRKVLVYSIYSGTRDTTARLR-MLLEARGFKVAVLRASVDAAKRE 676

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +  E  I +L  +P     GL+L      + F    +++    Q   R       +
Sbjct: 677 DWVADQVERGIDVLITNPELVKTGLDLLEFP-TIAFMQSGFNVYTMLQAARRSW-----R 730

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G K  V V +L    T     L+ +  K  +   
Sbjct: 731 IGQKHDVRVIFLGYAGTSQMECLRLMAKKIAVSQS 765


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K  + L  +    ++   N+ +K+          +Y  ++K       +K  AL  +I+
Sbjct: 193 RKLAKGLVNNPVEISVTPRNATAKS------VEQYIYMVDQK-------QKTAALIHLIK 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         R+ K               ++       +  +  G + +L A
Sbjct: 240 QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  G+++    N +V F L    E++   + RIG T R   +G 
Sbjct: 300 -TDIAARGIDIDQLPN-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 342


>gi|254992891|ref|ZP_05275081.1| SNF2 family protein [Listeria monocytogenes FSL J2-064]
          Length = 396

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 227 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 272

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 273 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 311

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 312 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 365

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 366 DTNISKKT----SLLQEFKKE 382


>gi|77361539|ref|YP_341114.1| ATP-dependent helicase HepA [Pseudoalteromonas haloplanktis TAC125]
 gi|76876450|emb|CAI87672.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 964

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT 100
           D    W     + +K  +V++  A A   I       +   ++ +        +++D   
Sbjct: 484 DPRVDWLIDTLKTLKREKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERDRAA 543

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               +E     +         G N Q+  + LV F L  + +  +Q I R+      + G
Sbjct: 544 AFFADEYDNAQILLCSEIGSEGRNFQFS-HHLVLFDLPLNPDLLEQRIGRLD-----RIG 597

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + V ++    +NT  E++L+
Sbjct: 598 QTQDVNIHVPYFENTAQEVLLR 619


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQGRTLDKD 97
           +  K++AL  ++E      +I+                    D+A L    PQ    ++ 
Sbjct: 266 NSHKLEALNRVLEAVTGEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQ----NQR 321

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T++   +G + +L A       GL+++  G +++ + + +D E +   + RIG T R 
Sbjct: 322 ERTVERLRKGTVNILVA-TDVAARGLDVERIG-LVINYDMPFDSEAY---VHRIGRTGRA 376

Query: 157 RQAGF 161
            ++G 
Sbjct: 377 GRSGE 381


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 45  EKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------- 94
           E+ + E+ D +K   L  +++  N    IV          + +A  +   +         
Sbjct: 217 EQEYIELPDMQKFDCLCRLLDMENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLS 276

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++++ EG I +L A       GL++  G   +  F +  D E +   + R G 
Sbjct: 277 QQKRDAVVRQFKEGTIDILVA-TDVAARGLDI-SGVTHVYNFDMPQDSETYVHRVGRTG- 333

Query: 154 TRQRQAGFKRAVFVYYLIAQ 173
            R  Q G      V   I Q
Sbjct: 334 -RAGQTGLAMTFVVSREIGQ 352


>gi|226223912|ref|YP_002758019.1| hypothetical protein Lm4b_01319 [Listeria monocytogenes Clip81459]
 gi|225876374|emb|CAS05083.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 401

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 232 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 277

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 278 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 316

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 317 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 370

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 371 DTNISKKT----SLLQEFKKE 387


>gi|254932374|ref|ZP_05265733.1| SNF2 family protein [Listeria monocytogenes HPB2262]
 gi|293583930|gb|EFF95962.1| SNF2 family protein [Listeria monocytogenes HPB2262]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E +I        I+   +      LQ+AFP                  KI 
Sbjct: 266 LSSEKFTITESLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KIT 308

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 309 TF----AKSSYGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 358

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D L+   +  K+     LL   KKE
Sbjct: 359 SGNVGLDSLIDTNISKKT----SLLQEFKKE 385


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
            K KAL  I+E AN    I+        + L     +              ++    ++ 
Sbjct: 228 SKTKALLPILEMANPESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRR 287

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +GKI ++ A       GL+++   + ++ F L  + E +   I RIG  R  +AG   
Sbjct: 288 FKDGKIKMIVA-TDIAARGLDVENLSH-VINFDLPDNTESY---IHRIG--RTGRAGKTG 340

Query: 164 A 164
            
Sbjct: 341 T 341


>gi|117919027|ref|YP_868219.1| ATP-dependent helicase HepA [Shewanella sp. ANA-3]
 gi|189029435|sp|A0KSP4|RAPA_SHESA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|117611359|gb|ABK46813.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 968

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVL 181
            G K  + ++    Q+T  E +L
Sbjct: 601 IGQKNDIQIHLPYLQDTAQERLL 623


>gi|119718166|ref|YP_925131.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119538827|gb|ABL83444.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 546

 Score = 41.1 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 10/138 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPC-TIQEWNEGK 108
            KI  +E ++      P +V   +   L  L  A      +G T   +       +  G+
Sbjct: 395 HKIDVVESLVAAHPGQPTLVIGQYIEQLDELALALDAPVIKGETKVAERQRLFDAFRHGE 454

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I LL          ++L      +     +   +E  Q + R+   +       R    Y
Sbjct: 455 IGLLVVS-KVANFSIDLPSAEVAIQVSGSFGSRQEEAQRLGRLLRPKT----EGRTAHFY 509

Query: 169 YLIAQNTIDELVLQRLRT 186
            +++++T+D    Q  + 
Sbjct: 510 TIVSRDTVDAEFAQNRQR 527


>gi|269137964|ref|YP_003294664.1| ATP-dependent helicase HepA [Edwardsiella tarda EIB202]
 gi|267983624|gb|ACY83453.1| ATP-dependent helicase HepA [Edwardsiella tarda EIB202]
 gi|304558012|gb|ADM40676.1| RNA polymerase associated protein RapA [Edwardsiella tarda FL6-60]
          Length = 968

 Score = 41.1 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE ++ +       V +   S + R           D+         EG   LL +   S
Sbjct: 519 LEQLLREREGIRAAVFHEGMSLIER-----------DRAAAYFASQEEGAQVLLCSEIGS 567

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G   N Q+  N LV F L ++ +  +Q I R+      + G  R + +Y    + T
Sbjct: 568 EGR--NFQF-ANRLVMFDLPFNPDLLEQRIGRLD-----RIGQARDIQIYVPCLEGT 616


>gi|167625696|ref|YP_001675990.1| ATP-dependent helicase HepA [Shewanella halifaxensis HAW-EB4]
 gi|189029431|sp|B0TVM8|RAPA_SHEHH RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|167355718|gb|ABZ78331.1| SNF2-related protein [Shewanella halifaxensis HAW-EB4]
          Length = 968

 Score = 41.1 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQ--------LANGAVYYDEEKHWKE--VHDEKIKALEVII 63
            +  + + A+  ++   K L         L+   +Y D +         D ++  L   +
Sbjct: 440 KMPEQYVTAYRVSAMMNKHLDTNAKVRQVLSPEKIYQDFDSGSASWWKFDPRVDWLIDFL 499

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--------WNEGKIP 110
           +   +  +++          L++A       Q     +    I+            G   
Sbjct: 500 KTNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQETGGAQ 559

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L         G N Q+  N LV F L  + +  +Q I R+      + G K  V ++  
Sbjct: 560 ALICS-EIGSEGRNFQFASN-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHLP 612

Query: 171 IAQNTIDELVLQ 182
              NT  E + +
Sbjct: 613 YLANTAQERLTE 624


>gi|72161129|ref|YP_288786.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914861|gb|AAZ54763.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 949

 Score = 41.1 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGK 108
           HD K++AL   ++   A+    +V   +      + +   Q    +        E    +
Sbjct: 462 HDAKLRALIATVKGLLADGCDPVVFCRYIPTAHYVAEELRQALPKNCAVEAVTSELPPRE 521

Query: 109 IPLLFAHPASC------------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                AH A+               G+NL      +V + + W+   H+Q   R+    Q
Sbjct: 522 REDRVAHLAATDRRRVLVATDCLSEGVNLHELFPAVVHYDMAWNPVRHEQREGRVDRFGQ 581

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +A   R V +Y   A N ID  V   L  K   
Sbjct: 582 -RAKRVRVVTLYG--ADNGIDGPVRDVLLRKHRT 612


>gi|118377404|ref|XP_001021881.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89303648|gb|EAS01636.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 987

 Score = 41.1 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 23/149 (15%)

Query: 57  KALEVIIEKANAAP----IIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNE- 106
             LE  ++  +  P    +IV   F+    ++ +       P    L +        N  
Sbjct: 842 SKLEKFLDDFHKIPFEDKVIVFTQFHDLTKKISQKLQKIDIPHVVLLGEPSEINIRLNTF 901

Query: 107 ---GKIPLLFAHPASCGHGLNLQYGGNILVF---FSLWW--DLEEHQQMIERIGVTRQRQ 158
               ++ +L         G+NL    +++     F + +      + Q I R       +
Sbjct: 902 KKVPEVRILIMSIEQAASGINLIEANHVIFMHPIFGVSYEKSRSTYAQCIGR-----ALR 956

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G  + V       +N+I++ +  +   K
Sbjct: 957 VGQSKPVHATLYCTKNSIEQTLSNQFTQK 985


>gi|56692697|ref|YP_164155.1| NTPase [Singapore grouper iridovirus]
 gi|42517409|gb|AAS18075.1| NTPase [Singapore grouper iridovirus]
          Length = 970

 Score = 41.1 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 101 IQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV-- 153
           ++ +N     +G    L         GL  +   N ++  +  W+  E  Q I R     
Sbjct: 456 VKRFNAEDNLDGDYIRLLLGSRVVAEGLTFKEVRNTVIL-TPHWNYTETAQAIARSWRAG 514

Query: 154 --TRQRQAGFKRAVFVYYLIA--------QNTIDELVLQRLRTKST 189
              R R  G    +FV+ L+A          +ID  + +    K  
Sbjct: 515 SHDRLRARGEDVQLFVHRLVAVPDFPAEEAPSIDLDMYKVSEGKDK 560


>gi|194335435|ref|YP_002017229.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307912|gb|ACF42612.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 915

 Score = 41.1 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ  G  L+   L W+    +Q + RI    Q +    ++V +  L 
Sbjct: 761 LVVATDAACEGLNLQTLG-TLINIDLPWNPARLEQRLGRIKRFGQAR----KSVDMLNLT 815

Query: 172 AQNTIDELVLQRLRTK 187
              T DE V  ++  +
Sbjct: 816 YHATRDEDVYAKISER 831


>gi|299531101|ref|ZP_07044514.1| helicase domain-containing protein [Comamonas testosteroni S44]
 gi|298721058|gb|EFI62002.1| helicase domain-containing protein [Comamonas testosteroni S44]
          Length = 797

 Score = 41.1 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 23/155 (14%)

Query: 55  KIKALEVII--EKANAAPIIVAYHF---NSDLARLQKAFPQGRTLD-----------KDP 98
           K   L  +   EKA    ++V   +       ARL+    + R              K  
Sbjct: 618 KEAKLIELCMDEKALGRKVLVYSIYSGTRDTTARLR-MLLEARGFKVAVLRASVDAAKRE 676

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +  E  I +L  +P     GL+L      + F    +++    Q   R       +
Sbjct: 677 DWVADQVERGIDVLITNPELVKTGLDLLEFP-TIAFMQSGFNVYTMLQAARRSW-----R 730

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G K  V V +L    T     L+ +  K  +   
Sbjct: 731 IGQKHDVRVIFLGYAGTSQMECLRLMAKKIAVSQS 765


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score = 41.1 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 40/221 (18%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y    +E           +   +  T + +Q A  A          EV+ +  K  E
Sbjct: 302 LKKYFDRLKE--------EAGSKGGSKATKRLMQDARLAGAIRVAGTADEVNPKTEKVKE 353

Query: 61  VIIEKANAAP---IIVAYHFNS-------DLARLQKAFP------------QGRTLDKDP 98
           +++E+    P   IIV  +F         +LA ++   P            +G +  K  
Sbjct: 354 IVVEQLKEKPSSRIIVFTNFRDTAEFVSRELAAVEGVKPVRFVGQASKLNDKGLSQKKQV 413

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +  G+   L A  +    GL++    ++++F+          Q   R G     +
Sbjct: 414 EILDAFRAGEFNTLIA-TSVAEEGLDI-PSTDLVIFYEPVPSEIRSIQRRGRTGRNAVGR 471

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 V V  LI++ T DE   +  + K       +N +K
Sbjct: 472 ------VIV--LISKGTRDEGTYRVSQAKEKKMYRTMNDMK 504


>gi|56418243|gb|AAV91057.1| helicase [Grouper iridovirus]
          Length = 950

 Score = 41.1 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 101 IQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV-- 153
           ++ +N     +G    L         GL  +   N ++  +  W+  E  Q I R     
Sbjct: 436 VKRFNAEDNLDGDYIRLLLGSRVVAEGLTFKEVRNTVIL-TPHWNYTETAQAIARSWRAG 494

Query: 154 --TRQRQAGFKRAVFVYYLIA--------QNTIDELVLQRLRTKST 189
              R R  G    +FV+ L+A          +ID  + +    K  
Sbjct: 495 SHDRLRARGEDVQLFVHRLVAVPDFAAEEAPSIDLDMYKVSEGKDK 540


>gi|113968919|ref|YP_732712.1| ATP-dependent helicase HepA [Shewanella sp. MR-4]
 gi|123029975|sp|Q0HMR2|RAPA_SHESM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|113883603|gb|ABI37655.1| SNF2-related protein [Shewanella sp. MR-4]
          Length = 968

 Score = 41.1 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVL 181
            G K  + ++    Q+T  E +L
Sbjct: 601 IGQKNDIQIHLPYLQDTAQERLL 623


>gi|315917407|ref|ZP_07913647.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691282|gb|EFS28117.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 2332

 Score = 41.1 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     +    + W   + +Q   RI     RQ    + V
Sbjct: 2255 KGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQRSGRIV----RQGNENKEV 2310

Query: 166  FVYYLIAQNTID 177
             +Y  + +NT D
Sbjct: 2311 SIYRYVTENTFD 2322


>gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345]
 gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 436

 Score = 41.1 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           +EK+  L  ++E+      IV  +      ++                     K    ++
Sbjct: 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G I +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTKGDIDILVA-TDVAARGLHISDVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +K      L +  VY  E K+       K + L  +I+K N   +++          L +
Sbjct: 217 AKQNSVSDLISHIVYSVESKN-------KQEFLIDMIKKKNLQQVLIFTRTKHGADHLAQ 269

Query: 87  AFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                  L           +    +  +  G I +L A       GL+++   + ++ F 
Sbjct: 270 KLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRILVA-TDVAARGLDIEELTH-VINFE 327

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFK 162
           L  + E++   + RIG  R  +AG K
Sbjct: 328 LPNNPEDY---VHRIG--RTGRAGAK 348


>gi|257466249|ref|ZP_05630560.1| helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 2324

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +L       G G N+Q     +    + W   + +Q   RI     RQ    + V
Sbjct: 2247 KGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQRSGRIV----RQGNENKEV 2302

Query: 166  FVYYLIAQNTID 177
             +Y  + +NT D
Sbjct: 2303 SIYRYVTENTFD 2314


>gi|225619690|ref|YP_002720947.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
           WA1]
 gi|225214509|gb|ACN83243.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
           WA1]
          Length = 564

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGKI 109
           K   ++ IIEK     I++   +   L  ++K         K P + ++     +  G+I
Sbjct: 409 KYTIVKKIIEKLEGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQSERDVIYKKFKTGEI 468

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L          ++L     ++     +   +E  Q   R+G   + + G  ++ F + 
Sbjct: 469 KILIVS-KVANLAVDLPDANVLIQISGTFGSRQEEAQ---RLGRVLRPKKGENKSYF-FS 523

Query: 170 LIAQNTIDEL 179
           +I  +T +E 
Sbjct: 524 IITTDTKEED 533


>gi|224500634|ref|ZP_03668983.1| hypothetical protein LmonF1_13566 [Listeria monocytogenes Finland
           1988]
 gi|224501745|ref|ZP_03670052.1| hypothetical protein LmonFR_04392 [Listeria monocytogenes FSL
           R2-561]
 gi|254828672|ref|ZP_05233359.1| SNF2 family domain-containing protein [Listeria monocytogenes FSL
           N3-165]
 gi|254829932|ref|ZP_05234587.1| hypothetical protein Lmon1_01185 [Listeria monocytogenes 10403S]
 gi|258601075|gb|EEW14400.1| SNF2 family domain-containing protein [Listeria monocytogenes FSL
           N3-165]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 230 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 276 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 315 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 368

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 369 DTNISKKT----SLLQEFKKE 385


>gi|126659499|ref|ZP_01730632.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
 gi|126619233|gb|EAZ89969.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
          Length = 493

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      + K++ L  ++ + +   +++  + N+ + R+ + F       + P     
Sbjct: 312 EAKEIAAGTEGKLRVLAELVCEHHQDSLLIFTNDNATVYRISQEFLIPAITHQTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-----LVFFSLWWDLEEHQQMIERIGV 153
             +  + EG    L        H LN   G ++      +  S      E+ Q + RI  
Sbjct: 372 DILTRFREGIYKSLVTS-----HVLN--EGVDVPEVKVAIIISGTSSAREYVQRLGRILR 424

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             +   G  +   +Y ++A++T +E + QR + 
Sbjct: 425 KGK---GKNKLATLYEIVAEDTSEERISQRRKE 454


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
           ++K++ L  +IE+      IV  +       L                     K    ++
Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G++ +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTKGELDILVA-TDVAARGLHISDVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|47096936|ref|ZP_00234513.1| SNF2 family domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254898524|ref|ZP_05258448.1| hypothetical protein LmonJ_01875 [Listeria monocytogenes J0161]
 gi|254911985|ref|ZP_05261997.1| SNF2 family domain-containing protein [Listeria monocytogenes
           J2818]
 gi|254936312|ref|ZP_05268009.1| SNF2 family domain-containing protein [Listeria monocytogenes
           F6900]
 gi|284801696|ref|YP_003413561.1| hypothetical protein LM5578_1450 [Listeria monocytogenes 08-5578]
 gi|284994838|ref|YP_003416606.1| hypothetical protein LM5923_1403 [Listeria monocytogenes 08-5923]
 gi|47014696|gb|EAL05652.1| SNF2 family domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608902|gb|EEW21510.1| SNF2 family domain-containing protein [Listeria monocytogenes
           F6900]
 gi|284057258|gb|ADB68199.1| hypothetical protein LM5578_1450 [Listeria monocytogenes 08-5578]
 gi|284060305|gb|ADB71244.1| hypothetical protein LM5923_1403 [Listeria monocytogenes 08-5923]
 gi|293589948|gb|EFF98282.1| SNF2 family domain-containing protein [Listeria monocytogenes
           J2818]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.100,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 230 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 276 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 315 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 368

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 369 DTNISKKT----SLLQEFKKE 385


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
           D+KI  L  ++        ++      +   L                 RT  +    ++
Sbjct: 434 DDKISHLLDLLSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALE 493

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+ P+L A  A    GL++    + ++ + L  D++++   + RIG  R  +AG  
Sbjct: 494 MFRTGRCPILVA-TAVAARGLDIPNVTH-VINYDLPTDIDDY---VHRIG--RTGRAGNT 546


>gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
 gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
          Length = 645

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQ 102
           D+KI  L  ++        ++      +   L                 RT  +    ++
Sbjct: 408 DDKISHLLDLLSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALE 467

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+ P+L A  A    GL++    + ++ + L  D++++   + RIG  R  +AG  
Sbjct: 468 MFRTGRCPILVA-TAVAARGLDIPNVTH-VINYDLPTDIDDY---VHRIG--RTGRAGNT 520


>gi|16803351|ref|NP_464836.1| hypothetical protein lmo1311 [Listeria monocytogenes EGD-e]
 gi|16410727|emb|CAC99389.1| lmo1311 [Listeria monocytogenes EGD-e]
          Length = 401

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 232 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 277

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 278 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 316

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 317 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 370

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 371 DTNISKKT----SLLQEFKKE 387


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ ++E+    
Sbjct: 198 SATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|288801308|ref|ZP_06406762.1| LOW QUALITY PROTEIN: DNA methylase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331691|gb|EFC70175.1| LOW QUALITY PROTEIN: DNA methylase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 650

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 1/89 (1%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +   + +T       I   NEG I +LF   +  G G+N Q     +      W   + +
Sbjct: 357 RFIQEAKTDKARKTLIAGMNEGSIRVLFGSTSMLGTGVNAQKRVVTIHHLDTPWRPSDLE 416

Query: 146 QMIERIGVTRQR-QAGFKRAVFVYYLIAQ 173
           Q   R               V  Y ++  
Sbjct: 417 QRDGRAVRKGNGNHTAQGHHVNPYRVVTA 445


>gi|209693956|ref|YP_002261884.1| ATP-dependent helicase HepA [Aliivibrio salmonicida LFI1238]
 gi|254789672|sp|B6EPV7|RAPA_ALISL RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|208007907|emb|CAQ78037.1| RNA polymerase-associated protein RapA (ATP-dependent helicase
           hepA) [Aliivibrio salmonicida LFI1238]
          Length = 969

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH----FNSDLARLQKAFPQGRTLDKDPC 99
           +   W +        LE++ E  N   +I+A         + A  ++   +G    +   
Sbjct: 482 DSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMS 541

Query: 100 TIQE--------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            I+           EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 IIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 + G KR + ++    Q T  EL+ +
Sbjct: 600 D-----RIGQKRDIDIHVPYLQGTSQELLAR 625


>gi|294776307|ref|ZP_06741790.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449847|gb|EFG18364.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1907

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I+  N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1483 KTDKARKAVIEAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1542

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1543 VRAGNEIAKHFAGNNVDVIIY 1563


>gi|186686374|ref|YP_001869570.1| helicase domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186468826|gb|ACC84627.1| helicase domain protein [Nostoc punctiforme PCC 73102]
          Length = 1103

 Score = 41.1 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 91  GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G + DK    + ++ N     +L     S   GLNLQ+  + L+ F L W   + +Q + 
Sbjct: 614 GESPDKVEEGLSKFRNNPNCFILVCD-RSGEEGLNLQF-ADWLIHFDLPWSPNQLEQRLG 671

Query: 150 RIGVTRQRQAGFKRAVFV 167
           R+     +  G +  V +
Sbjct: 672 RLDRIGSK-IGVQSCVLI 688


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score = 41.1 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 45  EKHWKEVHDE-KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
           ++ + EVH+  K +AL  +I+  +    I+       +  L +A  +            +
Sbjct: 216 DQAYIEVHERQKFEALSRLIDMESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLS 275

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    ++++ +G I +L A       GL++  G   ++ F L  D E +   + RIG 
Sbjct: 276 QNQRDNVMRKFRDGSIDVLVA-TDVAARGLDV-SGVTHVINFDLPQDPESY---VHRIG- 329

Query: 154 TRQRQAGFKRAVFVY-------YL-----IAQNTIDEL----VLQRLRTK-STIQDLLLN 196
            R  +AG +   + +       +L     + ++ I       + + +  K     + L++
Sbjct: 330 -RTGRAGKEGTAWSFVTPRETDHLHFIEKVTRHKITRKPLPSIAEAIEGKQRVTAERLID 388

Query: 197 ALKKET 202
            ++ E 
Sbjct: 389 IVQNEG 394


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score = 41.1 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
              +D+K+  L+ +IE+      IV  +       +       +             K  
Sbjct: 237 HPSNDDKMALLQTLIEEEWPERAIVFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRN 296

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ-- 156
             ++++ +GK+ +L A       GL++    + +  + L  +  ++   I R G      
Sbjct: 297 SILEQFTQGKLDILVA-TDVAARGLHI-PAVSHVFNYDLPDNCGDYVHRIGRTGRAGAEG 354

Query: 157 RQAGFKRAVFVYYLIAQNTIDELV 180
               F    ++Y L A   I+E +
Sbjct: 355 HSISFACEKYIYNLPA---IEEFI 375


>gi|91223442|ref|ZP_01258707.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
           12G01]
 gi|91191528|gb|EAS77792.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
           12G01]
          Length = 641

 Score = 41.1 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
            +K + L  II  +   P IV         R+ K+             G   D      Q
Sbjct: 216 TKKQEQLSEIIASSPKLPTIVYVTQQQTAERVAKSLIHIGINAHAYHAGMKSDVREQIQQ 275

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           ++ +G+I  + A  A  G G++       ++ F L   +E + Q I R G   QR
Sbjct: 276 QFMDGQIDCIVATIA-FGMGVDKSD-IRRVIHFDLPKSIENYAQEIGRAGRDGQR 328


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQ 90
             GA     ++  +     K + L  I+        +V      +   L     Q++FP 
Sbjct: 312 VGGATSDITQRIIEVDEFGKREKLSEILSATGVDRTLVFVETKRNADFLATYLSQESFPT 371

Query: 91  G-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    ++++  G  P+L A  +    GL++    + +V + L  ++EE+ 
Sbjct: 372 TSIHGDRFQREREEALRDFRSGLAPVLVA-TSVAARGLDIPDVKH-VVNYDLPNNIEEY- 428

Query: 146 QMIERIGVTRQRQAG 160
             + RIG  R  + G
Sbjct: 429 --VHRIG--RTGRIG 439


>gi|18978274|ref|NP_579631.1| DNA repair helicase putative [Pyrococcus furiosus DSM 3638]
 gi|18894095|gb|AAL82026.1| DNA repair helicase putative [Pyrococcus furiosus DSM 3638]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-------------NSASKTVKCLQLANGAVYYDEEKHW 48
           K Y +F+R  Y + +G    +              N A K ++ L+ A         +  
Sbjct: 260 KYYERFKR--YVEKRGIQFTSLKDFQRIVLSTANDNEAFKALRALEQA---------RKI 308

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----PCTIQE 103
                +K++ L  I+E+     II+    N  +  + + F       K         +++
Sbjct: 309 AFNSTKKLEKLREILERHRGEKIIIFTRHNDLVYLISRKFLIPAITHKTYKAERSEILRK 368

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G              G+++    ++ V  S      E  Q + RI     R A  K 
Sbjct: 369 FRKGAYK-AIVSSQVLDEGIDVPD-ASVGVIISGTGSSREFIQRLGRIL----RPAPGKE 422

Query: 164 AVFVYYLIAQNTIDELVLQRLRT 186
              +Y LI+  T +  + +R R+
Sbjct: 423 KAILYELISSGTSEVRISKRRRS 445


>gi|238490554|ref|XP_002376514.1| DNA repair helicase rad5,16, putative [Aspergillus flavus NRRL3357]
 gi|220696927|gb|EED53268.1| DNA repair helicase rad5,16, putative [Aspergillus flavus NRRL3357]
          Length = 878

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFA 114
           +    +V   F ++   +     +          G T D+    ++ + +   +  +L  
Sbjct: 683 HGEKAMVWTQFPAEQIYVAAILKEANIDAEVFHAGLTRDERMKLVERFTQKHDECMVLIC 742

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  G+NLQ     +   ++        Q I R+      + G +R  FVY    ++
Sbjct: 743 AYNVNAAGMNLQNLCRNVHILTMSLSKSVVNQAIGRVS-----RLGQERMTFVYEYRLRS 797

Query: 175 TIDELVLQRLRTKS 188
           + DE ++ R   K+
Sbjct: 798 SFDEDLVSRSERKA 811


>gi|172039355|ref|YP_001805856.1| DNA repair helicase [Cyanothece sp. ATCC 51142]
 gi|171700809|gb|ACB53790.1| probable DNA repair helicase [Cyanothece sp. ATCC 51142]
          Length = 493

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      + K++ L  ++ + +   +++  + N+ + R+ + F       + P     
Sbjct: 312 EAKEIAAGTEGKLRVLAELVCEHHQDSLLIFTNDNATVYRISQEFLIPAITHQTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-----LVFFSLWWDLEEHQQMIERIGV 153
             +  + EG    L        H LN   G ++      +  S      E+ Q + RI  
Sbjct: 372 DILTRFREGIYKSLVTS-----HVLN--EGVDVPEVKVAIIISGTSSAREYVQRLGRILR 424

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             +   G  +   +Y ++A++T +E + QR + 
Sbjct: 425 KGK---GKNKLATLYEIVAEDTSEERISQRRKE 454


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 24/124 (19%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQGRTLDKD 97
           +  K++AL  ++E      +I+                    D+A L    PQ    ++ 
Sbjct: 271 NSHKLEALNRVLEAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQ----NQR 326

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T++   +G + +L A       GL++   G +++ + + +D E +   + RIG T R 
Sbjct: 327 ERTVERLRKGTVNILVA-TDVAARGLDVDRIG-LVINYDMPFDSEAY---VHRIGRTGRA 381

Query: 157 RQAG 160
            ++G
Sbjct: 382 GRSG 385


>gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 589

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + K    G   ++    ++ +  G+  +L A  +    GL++    N+++F+        
Sbjct: 440 IGKTGEYGLRQEEQVEVVERFRAGEYSILVA-TSVGEEGLDIAE-CNLVIFYDNVPSAIR 497

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q        R+ + G +    V  L+A++TIDE      R K      +++ + +
Sbjct: 498 FVQ--------RKGRTGRRMPGKVIVLVAKDTIDEAYHWISRKKVRQVRSIVSIVNR 546


>gi|269966225|ref|ZP_06180314.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
 gi|269829140|gb|EEZ83385.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
          Length = 641

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
            +K + L  II  +   P IV         R+ K+             G   D      Q
Sbjct: 216 TKKQEQLSEIIASSPKLPTIVYVTQQQTAERVAKSLIHIGINAHAYHAGMKSDVREQIQQ 275

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           ++ +G+I  + A  A  G G++       ++ F L   +E + Q I R G   QR
Sbjct: 276 QFMDGQIDCIVATIA-FGMGVDKSD-IRRVIHFDLPKSIENYAQEIGRAGRDGQR 328


>gi|260438308|ref|ZP_05792124.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292809330|gb|EFF68535.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 2481

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2104 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2163

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2164 R----GIRQGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 2207


>gi|255072011|ref|XP_002499680.1| predicted protein [Micromonas sp. RCC299]
 gi|226514942|gb|ACO60938.1| predicted protein [Micromonas sp. RCC299]
          Length = 442

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 23/142 (16%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAA---PIIVAYH------FNSDLARL 84
           A G +  D+  H    H +  K L+ I E  K +      ++V  +      F  DL  L
Sbjct: 219 AAGDLNVDQTVHVCAEHKKGRKLLKHITELRKNDGRSKSRVLVFANRIKTVNFVGDL--L 276

Query: 85  QKAFPQGRTL------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           ++   +  TL      ++    ++++  GK P+L A     G GL++    +++ +  + 
Sbjct: 277 KRHGEKVCTLHGELKQERRDQALKDFKSGKSPVLVA-TDVAGRGLDITGLEHVVNW-DMP 334

Query: 139 WDLEEHQQMIERIGVTRQRQAG 160
             +E++   + R G  R  + G
Sbjct: 335 GSVEQYTHRVGRAG--RSGRKG 354


>gi|320103927|ref|YP_004179518.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
 gi|319751209|gb|ADV62969.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
          Length = 514

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------QGRTLDKDP 98
           ++        KI+ L  ++++ N   +++  H N+ + ++ + F       Q +T ++  
Sbjct: 365 QREIALAAPAKIQLLRRLLDRHNGDRVLIFTHDNATVYQIAREFLVPVITHQTKTKERHE 424

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++ +G  P+L         G+N+    N+ +  S    + EH Q + RI      +
Sbjct: 425 -VLTKFRQGVYPVLATS-RVLNEGVNVPE-ANVGIVLSGTGTVREHVQRLGRIL-----R 476

Query: 159 AGFKRAVFVYYLIAQNTIDE 178
               +   +Y ++ + T++E
Sbjct: 477 KAADKEAILYEVVTRGTVEE 496


>gi|317481285|ref|ZP_07940356.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
 gi|316902618|gb|EFV24501.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
          Length = 1905

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I+  N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1481 KTDKARKAVIEAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1540

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1541 VRAGNEIAKHFAGNNVDVIIY 1561


>gi|331224893|ref|XP_003325118.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309304108|gb|EFP80699.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 508

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 26/139 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKHWKEVHDEKIKALEVII 63
           GE  ++     +     Q  N  ++              D  K    V++ K+      +
Sbjct: 365 GERWDSSEFFRQLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVNNLKV--FLEGV 422

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLL 112
              N    +V   F   L  +++A  +                +D    +        +L
Sbjct: 423 RGINRTKAVVFSSFTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVL 482

Query: 113 FAHPASCGHGLNLQYGGNI 131
            A   + G G++L+   N+
Sbjct: 483 LASVQAGGVGIDLRCAQNV 501


>gi|284162865|ref|YP_003401488.1| type III restriction protein res subunit [Archaeoglobus profundus
           DSM 5631]
 gi|284012862|gb|ADB58815.1| type III restriction protein res subunit [Archaeoglobus profundus
           DSM 5631]
          Length = 450

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTI 101
           +        K+K L  ++EK     II+   +N  +  + + F       +T DK+   I
Sbjct: 307 RKIAFNSKNKLKVLRDLLEKHKGDKIIIFTRYNDLVYTISRVFLIPAITHKTSDKERKLI 366

Query: 102 QE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +  GK   +         G+++    N+ +  S      E  Q   R+G   +   G
Sbjct: 367 LDGFRRGKFKAIVTS-QVLDEGIDVPD-ANVGIIVSGTGSSREFIQ---RLGRILRPAEG 421

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTK 187
              AV +Y L++++T +  V +R   K
Sbjct: 422 KDLAV-LYELVSKDTGEVRVAKRRAKK 447


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           +  GA    E+   +     K + L  +++       +V          +     Q    
Sbjct: 179 IVGGACTDVEQTFIQVTKFSKREQLLELLKTTGMERTMVFVETKRQADFIAVFLCQEKVS 238

Query: 91  ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+
Sbjct: 239 TTSIHGDREQREREQALGDFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEY 296

Query: 145 QQMIERIGVTR 155
              I R G   
Sbjct: 297 VHRIGRTGRCG 307


>gi|291535497|emb|CBL08609.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2587

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +LF      G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 2238 SGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFPEV 2293

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + + T D  + Q + +K      ++ +
Sbjct: 2294 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2325


>gi|310658941|ref|YP_003936662.1| helicase domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308825719|emb|CBH21757.1| Helicase domain protein [Clostridium sticklandii]
          Length = 856

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 59/223 (26%)

Query: 22  AFNSASKTVKCLQL------------ANGA-------VYYDEEKHWKEVHDEKIKALEVI 62
           A N     ++ LQL            ANG        +  D + +  +    ++ AL   
Sbjct: 610 AKNKLVLIIRLLQLESNPKMLLNSIDANGEDFTDILDISGDVDDYDFKDFSSELVALINS 669

Query: 63  IEKAN---------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           ++K +                  +IV   F   + RL                  ++ E 
Sbjct: 670 VDKTHKFSACVNQVLNICAKDETVIVWCIFVDSIMRLSNELQAQGLNVGCIYGSTDFEER 729

Query: 108 KI----------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                        +L  +P +    ++L +  +  ++F   ++L    Q  +RI      
Sbjct: 730 DFLLKLFKEKKLDVLITNPHTLAESVSLHHTCHNAIYFEYSYNLVHLLQSKDRI-----H 784

Query: 158 QAG--FKRAVFVYYLIAQ--------NTIDELVLQRLRTKSTI 190
           + G    +    YYL  +         ++DE + +RL  K T 
Sbjct: 785 RLGLPQDQYTQYYYLQNEFFTIDNDAYSLDERIYERLLEKETT 827


>gi|292653988|ref|YP_003533886.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291369858|gb|ADE02086.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 13/142 (9%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------QGRTLDKDPCTIQEW 104
              +K+  L+ +I++ +    I+    N     + + F       Q +T D+    ++ +
Sbjct: 328 TATKKLDTLDNLIKRHHDDRAIIFTANNDFAYEISQEFIVPCITHQTKT-DERTEILERF 386

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+  +L         G+++    N+ +  S      ++ Q + RI      +    + 
Sbjct: 387 RTGEYSMLATS-QVLDEGIDV-PAANVGIILSGSASKRQYAQRLGRILRPTDDR----QP 440

Query: 165 VFVYYLIAQNTIDELVLQRLRT 186
             +Y +I ++T++  V QR R 
Sbjct: 441 ARLYEIITEDTMETYVSQRRRE 462


>gi|224543131|ref|ZP_03683670.1| hypothetical protein CATMIT_02331 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523918|gb|EEF93023.1| hypothetical protein CATMIT_02331 [Catenibacterium mitsuokai DSM
           15897]
          Length = 517

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++ +L       G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 168 SGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFLEV 223

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q + +K      ++ +
Sbjct: 224 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 255


>gi|71735168|ref|YP_273040.1| DNA topoisomerase III [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555721|gb|AAZ34932.1| DNA topoisomerase III [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 483

 Score = 40.7 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++V   +        R+++   Q               +   
Sbjct: 305 KEQALLDLCLAEKARNRKVLVCSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 364

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 365 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 418

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 419 GQKQDVRV 426


>gi|293369550|ref|ZP_06616128.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635254|gb|EFF53768.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1659

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 1390


>gi|297561671|ref|YP_003680645.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846119|gb|ADH68139.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1057

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNE-GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWW 139
            ++++      T +++   +    + G+ PL +     +   G++LQ   + LV + + +
Sbjct: 549 EQVKELHGGMSTEEREALRVAFQKDPGEHPLRILIATDAASEGIDLQRHCHRLVNYDIPF 608

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +  + +Q I RI      + G +    V++ +   
Sbjct: 609 NPNKLEQRIGRID-----RYGQENPPEVFHFVGTG 638


>gi|170730594|ref|YP_001776027.1| hypothetical protein Xfasm12_1481 [Xylella fastidiosa M12]
 gi|167965387|gb|ACA12397.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 45

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +A  T+DELV+ R  +K  +QDLLL A+K+ 
Sbjct: 1   MAAGTVDELVMARRESKREVQDLLLEAVKRR 31


>gi|53714149|ref|YP_100141.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|52217014|dbj|BAD49607.1| putative DNA methylase [Bacteroides fragilis YCH46]
          Length = 1659

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 1390


>gi|120597470|ref|YP_962044.1| ATP-dependent helicase HepA [Shewanella sp. W3-18-1]
 gi|189039399|sp|A1RFP5|RAPA_SHESW RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|120557563|gb|ABM23490.1| SNF2-related protein [Shewanella sp. W3-18-1]
          Length = 968

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE  +         V +   S + R           DK         EG    L      
Sbjct: 520 LEEALRTREGIQATVFHEGMSIIER-----------DKAGAYF-AQEEGGAQALICS-EI 566

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G N Q+  + LV F L  + +  +Q I R+      + G K  + ++    ++T  E
Sbjct: 567 GSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHLPYLEDTAQE 620

Query: 179 LVLQ 182
            ++Q
Sbjct: 621 RLMQ 624


>gi|225378233|ref|ZP_03755454.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
 gi|225209896|gb|EEG92250.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
          Length = 2481

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 2104 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 2163

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 2164 R----GIRQGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 2207


>gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032]
 gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032]
          Length = 421

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G I +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDIDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|196233912|ref|ZP_03132749.1| helicase domain protein [Chthoniobacter flavus Ellin428]
 gi|196221961|gb|EDY16494.1| helicase domain protein [Chthoniobacter flavus Ellin428]
          Length = 916

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 24/152 (15%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           + +E I E+      +    F+ +L  LQ+        D++     E    +I       
Sbjct: 467 ELVEEISERLQRELNVAVALFHEELTLLQR--------DRNAAFFSEEEGARI---LICS 515

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                G N Q+  + LV F L  D E  +Q I R+      + G    + ++    + T 
Sbjct: 516 EIGSEGRNFQF-AHHLVLFDLPEDPELLEQRIGRLD-----RIGQTATIQIHVPYLRGTA 569

Query: 177 DELV-------LQRLRTKSTIQDLLLNALKKE 201
            E++       L            ++ AL+K+
Sbjct: 570 SEVLARWYHEGLNAFEKNPHGASEIVRALEKD 601


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------------------PQG 91
              ++ +E  +E +  + IIV  ++      L +                        +G
Sbjct: 347 SRALEIIEDQLETSPESRIIVFTNYRDTATALLRFLQANASDAVKPVRFVGQASRENDEG 406

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  K    ++++  G+  +L A  +    G+++    ++++F+          Q   R 
Sbjct: 407 LSQRKQSEILEKFRAGEYNVLIA-TSVGEEGIDI-PSTDMVLFYEPVPSEIRSIQRKGRT 464

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G  R  +      V V  LIA+ T DE        K       L  +
Sbjct: 465 GRARTGR------VVV--LIAKGTRDEAYYWISDRKERTMRRQLQGM 503


>gi|330432060|gb|AEC17119.1| ATP-dependent helicase HepA [Gallibacterium anatis UMN179]
          Length = 972

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +       V +   S + R           D+      +  +G    +    +
Sbjct: 521 QLEKILREKEGIRSAVFHEKMSIVER-----------DRAAAYFAQQEDGAK--VLLSSS 567

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+    LV F+L  + +  +Q I R+      + G  R V +Y
Sbjct: 568 IGAEGRNFQF-ACRLVLFNLPVNPDVLEQSIGRLD-----RIGQTRDVQIY 612


>gi|265751740|ref|ZP_06087533.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236532|gb|EEZ22002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1938

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1509 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1568

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1569 VRAGNEIAKHFAGNNVDVIIY 1589


>gi|254297099|ref|ZP_04964552.1| dead/deah box helicase [Burkholderia pseudomallei 406e]
 gi|157807295|gb|EDO84465.1| dead/deah box helicase [Burkholderia pseudomallei 406e]
          Length = 755

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 64  EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPCTIQEWNEGKIP 110
           EKA    I+V   ++       RL+    Q               +    I E  +  I 
Sbjct: 588 EKAVGRKILVYSVYSGTRDTTFRLKTLLEQEGFKVAVLRASVDASRREDWIAEQLDRGID 647

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L  +P     GL+L      +VF    +++   QQ   R       + G K+ + V YL
Sbjct: 648 VLITNPDLVKTGLDLLEFP-TIVFMQSGYNVYTLQQAARRSW-----RIGQKQPIKVIYL 701

Query: 171 IAQNTIDELVLQRLRTKSTIQDL 193
              +T     L  +  K  +   
Sbjct: 702 GYADTSQMHCLTLMAKKIAVSQS 724


>gi|301308913|ref|ZP_07214863.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300833103|gb|EFK63723.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1391 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1450

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1451 VRAGNEIAKHFAGNNVDVIIY 1471


>gi|295086872|emb|CBK68395.1| Helicase conserved C-terminal domain./SNF2 family N-terminal
            domain./N-6 DNA Methylase. [Bacteroides xylanisolvens
            XB1A]
          Length = 1947

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1513 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1572

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1573 VRAGNEIAKHFAGNNVDVIIY 1593


>gi|255089767|ref|XP_002506805.1| predicted protein [Micromonas sp. RCC299]
 gi|226522078|gb|ACO68063.1| predicted protein [Micromonas sp. RCC299]
          Length = 1263

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS----------LWWDLEEHQ 145
            + P    +++  +  ++     S   GLNL    ++++                      
Sbjct: 1164 QSPSPGADFSSPR--VMCLAFGSHASGLNLHRANHVVIVHPFAAKSVCPGAPDLTPLAQA 1221

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
               ER  V R  +   ++    Y + A  T++E +  
Sbjct: 1222 AAYERQAVGRIARYPQRKTCHAYRMFAVGTVEEELYA 1258


>gi|224024415|ref|ZP_03642781.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
            18228]
 gi|224017637|gb|EEF75649.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
            18228]
          Length = 1913

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1520 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1579

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1580 VRAGNEIAKHFAGNNVDVIIY 1600


>gi|254297090|ref|ZP_04964543.1| ATP-dependent helicase HepA [Burkholderia pseudomallei 406e]
 gi|157807896|gb|EDO85066.1| ATP-dependent helicase HepA [Burkholderia pseudomallei 406e]
          Length = 931

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ   + +V + L W+   H+Q   R+      + G         LI  A N +D  
Sbjct: 531 GVNLQEHFDSVVHYDLSWNPTRHEQREGRVD-----RFGQPCPRVRATLIYGANNPVDGA 585

Query: 180 VLQRLRTKST 189
           VLQ +  K+ 
Sbjct: 586 VLQVILRKAE 595


>gi|319427743|gb|ADV55817.1| SNF2-related protein [Shewanella putrefaciens 200]
          Length = 968

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE  +         V +   S + R           DK         EG    L      
Sbjct: 520 LEEALRTREGIQATVFHEGMSIIER-----------DKAGAYF-AQEEGGAQALICS-EI 566

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G N Q+  + LV F L  + +  +Q I R+      + G K  + ++    ++T  E
Sbjct: 567 GSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHLPYLEDTAQE 620

Query: 179 LVLQ 182
            ++Q
Sbjct: 621 RLMQ 624


>gi|331222921|ref|XP_003324134.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309303124|gb|EFP79715.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 614

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKHWKEVHDEKIKALEVII 63
           GE  ++     +     Q  N  ++              D  K    V + K+      +
Sbjct: 459 GERWDSSEFFRQLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVDNLKV--FLEGV 516

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLL 112
              N    +V   F   L  +++A  +                +D    +        +L
Sbjct: 517 RGINRTKAVVFSSFTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVL 576

Query: 113 FAHPASCGHGLNLQYGGNI 131
            A   + G G++L+   N+
Sbjct: 577 LASVQAGGVGIDLRCAQNV 595


>gi|331222825|ref|XP_003324086.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309303076|gb|EFP79667.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 614

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKHWKEVHDEKIKALEVII 63
           GE  ++     +     Q  N  ++              D  K    V + K+      +
Sbjct: 459 GERWDSSEFFRQLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVDNLKV--FLEGV 516

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLL 112
              N    +V   F   L  +++A  +                +D    +        +L
Sbjct: 517 RGINRTKAVVFSSFTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVL 576

Query: 113 FAHPASCGHGLNLQYGGNI 131
            A   + G G++L+   N+
Sbjct: 577 LASVQAGGVGIDLRCAQNV 595


>gi|213972020|ref|ZP_03400116.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
 gi|213923236|gb|EEB56835.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
          Length = 752

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKAQNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 484 VGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLST 543

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F L   ++E+ 
Sbjct: 544 TSIHGDREQREREKALSDFRTGQCPVLVA-TSVAARGLDIEQVQH-VVNFDLPSSIDEYV 601

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 602 HRIGRTGRCG 611


>gi|253578091|ref|ZP_04855363.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850409|gb|EES78367.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39BFAA]
          Length = 2587

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +LF      G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 2238 SGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFPEV 2293

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY  + + T D  + Q + +K      ++ +
Sbjct: 2294 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2325


>gi|222475988|ref|YP_002564509.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454359|gb|ACM58623.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 11/145 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYH---FNSDLAR--LQKAFPQGRTLDKDPCTI 101
                 ++K+  L+ ++++ +    I+      F  D++R  +          D+    +
Sbjct: 324 RIARTAEKKLDTLDNLLKRHHDDRTIIFTANNDFAYDISREFIVPCITHQTKTDERTEIL 383

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+  +L         G+++    N+ +  S      ++ Q + RI      +   
Sbjct: 384 DRFRSGEYSMLVTS-QVLDEGIDV-PAANVGIILSGSASKRQYAQRLGRILRPTDDR--- 438

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRT 186
            +   +Y +I ++T++  V QR R 
Sbjct: 439 -QPARLYEIITEDTMETYVSQRRRE 462


>gi|242214076|ref|XP_002472863.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728069|gb|EED81971.1| predicted protein [Postia placenta Mad-698-R]
          Length = 452

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 80  DLARLQKAFPQGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI--LVFFS 136
           D   L+         D+D   T+QEW  G   ++ A  A  G G+     GN+  ++ ++
Sbjct: 255 DKYGLKARHYHAGLDDRDRTVTMQEWKRGDFKIVVATIA-LGMGI---DKGNVRFVIHYA 310

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY------YLIAQNTIDELVLQRLRTKS 188
           +   LE + Q        R  + G      +Y      + + +   +E + +  + K 
Sbjct: 311 MPSSLEGYYQ-----ETGRAGRDGKPADCILYYSGSDAHPVWRRINEESIPETEKEKQ 363


>gi|146294389|ref|YP_001184813.1| ATP-dependent helicase HepA [Shewanella putrefaciens CN-32]
 gi|189029434|sp|A4YAN1|RAPA_SHEPC RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|145566079|gb|ABP77014.1| SNF2-related protein [Shewanella putrefaciens CN-32]
          Length = 968

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE  +         V +   S + R           DK         EG    L      
Sbjct: 520 LEEALRTREGIQATVFHEGMSIIER-----------DKAGAYF-AQEEGGAQALICS-EI 566

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G N Q+  + LV F L  + +  +Q I R+      + G K  + ++    ++T  E
Sbjct: 567 GSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHLPYLEDTAQE 620

Query: 179 LVLQ 182
            ++Q
Sbjct: 621 RLMQ 624


>gi|75758617|ref|ZP_00738735.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904126|ref|ZP_04068221.1| SWF/SNF family helicase [Bacillus thuringiensis IBL 4222]
 gi|228930697|ref|ZP_04093675.1| SWF/SNF family helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493876|gb|EAO56974.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828944|gb|EEM74603.1| SWF/SNF family helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855211|gb|EEM99775.1| SWF/SNF family helicase [Bacillus thuringiensis IBL 4222]
          Length = 528

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 17/131 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
             Y D +  + E +  K+  LE ++E        +++  H+     RLQ  F        
Sbjct: 352 PTYLDSDIPFDEENVPKLDMLEELLENKIKVGEQVLIFCHYKESQRRLQDWFENRGYDTE 411

Query: 93  -------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    ++    +  + E +  +L         GLN     + L+F+S   +  +  
Sbjct: 412 ILNGDITNREERNGIVNAFKEKEYEVLITSVQK---GLNFGDVPH-LIFYSFSTNPNKMI 467

Query: 146 QMIERIGVTRQ 156
           QM  RI  +  
Sbjct: 468 QMEGRITRSFH 478


>gi|294776631|ref|ZP_06742100.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449546|gb|EFG18077.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1937

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1508 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1567

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1568 VRAGNEIAKHFAGNNVDVIIY 1588


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    E+   +     K + L   ++       +V          +     Q+  P
Sbjct: 497 IVGGACSDVEQTFVQVTKYSKREQLLDFLKTIGNERTMVFVETKRQADFIATFLCQEELP 556

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+
Sbjct: 557 TTSIHGDREQREREQALADFKAGKCPILVA-TSVAARGLDIPEVQH-VVNFDLPKNIDEY 614

Query: 145 QQMIERIGVTRQRQAGF-KRAVFVY 168
              + RIG  R  + G   RAV  Y
Sbjct: 615 ---VHRIG--RTGRCGNIGRAVSFY 634


>gi|27364844|ref|NP_760372.1| ATP-dependent helicase HepA [Vibrio vulnificus CMCP6]
 gi|41017731|sp|Q8DCG1|RAPA_VIBVU RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|27360989|gb|AAO09899.1| RNA polymerase associated protein rapA [Vibrio vulnificus CMCP6]
          Length = 969

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S L R           DK         EG   +L     
Sbjct: 520 QLEQALREREGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-E 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               G N Q+  N LV F L ++ +  +Q I R+      + G KR + ++    Q T  
Sbjct: 567 IGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQKRDIDIHVPYLQGTAQ 620

Query: 178 ELVLQ 182
           E++ +
Sbjct: 621 EVLAR 625


>gi|303235671|ref|ZP_07322278.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302484118|gb|EFL47106.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 665

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        ++  N G I ++F   +  G G+N Q 
Sbjct: 238 KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVEAMNRGDIRIIFGSTSMLGTGVNAQQ 294

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 295 RAVAIHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNL 352

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 353 LHNKQ----LFINQLKTNTLG 369


>gi|270295247|ref|ZP_06201448.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274494|gb|EFA20355.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1937

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1508 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1567

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1568 VRAGNEIAKHFAGNNVDVIIY 1588


>gi|255009084|ref|ZP_05281210.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146833|ref|ZP_07809026.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135600|gb|EFR52960.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1659

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      L+ K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLKNKQM 1390


>gi|301312460|ref|ZP_07218375.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300829549|gb|EFK60204.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1391 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1450

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1451 VRAGNEIAKHFAGNNVDVIIY 1471


>gi|255016390|ref|ZP_05288516.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|319644400|ref|ZP_07998854.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
 gi|317384120|gb|EFV65095.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
          Length = 1943

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1514 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1573

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1574 VRAGNEIAKHFAGNNVDVIIY 1594


>gi|159128561|gb|EDP53676.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 394

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + K  +L        HGLNL    + +V      ++    Q + R+      + G  
Sbjct: 224 DSKCDVLLTSYQCGAHGLNLHGQCSRVVLLEPPLNMNTLFQAVGRV-----HRLGQG 275


>gi|320155233|ref|YP_004187612.1| RNA polymerase associated protein RapA [Vibrio vulnificus MO6-24/O]
 gi|319930545|gb|ADV85409.1| RNA polymerase associated protein RapA [Vibrio vulnificus MO6-24/O]
          Length = 969

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S L R           DK         EG   +L     
Sbjct: 520 QLEQALREREGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-E 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               G N Q+  N LV F L ++ +  +Q I R+      + G KR + ++    Q T  
Sbjct: 567 IGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQKRDIDIHVPYLQGTAQ 620

Query: 178 ELVLQ 182
           E++ +
Sbjct: 621 EVLAR 625


>gi|302838767|ref|XP_002950941.1| hypothetical protein VOLCADRAFT_104918 [Volvox carteri f.
            nagariensis]
 gi|300263636|gb|EFJ47835.1| hypothetical protein VOLCADRAFT_104918 [Volvox carteri f.
            nagariensis]
          Length = 1284

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
             P +VA  F    + +    P   T  K    I  +    K  +      S   G+NL  
Sbjct: 1071 KPKLVAEGFGH--STITG-HPCDMTQKKRTEAIDSFQRNPKTCVFLLSMRSGAVGINLT- 1126

Query: 128  GGNILVFFSLWWDLEEHQQM-------IERI-------GVTRQRQAGFKRA---VFVYYL 170
              N +       +    +           R+        + R  + G +R       +  
Sbjct: 1127 AANYVFLLEPCMNPAMEEHGSHTATLKSARLPRHIVFRAIGRAWRMGQQRPVVVKRFFVK 1186

Query: 171  IAQNTIDELVLQRLRTKS 188
            ++  +++E V++ ++T+ 
Sbjct: 1187 VSPGSVEERVMEVVKTRR 1204


>gi|293371761|ref|ZP_06618171.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633213|gb|EFF51784.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1944

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1515 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1574

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1575 VRAGNEIAKHFAGNNVDVIIY 1595


>gi|218134672|ref|ZP_03463476.1| hypothetical protein BACPEC_02575 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990057|gb|EEC56068.1| hypothetical protein BACPEC_02575 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1200

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 823 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 882

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 883 R----GIRQGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 926


>gi|317475388|ref|ZP_07934652.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
            1_2_48FAA]
 gi|316908416|gb|EFV30106.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
            1_2_48FAA]
          Length = 1937

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1508 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1567

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1568 VRAGNEIAKHFAGNNVDVIIY 1588


>gi|37681109|ref|NP_935718.1| ATP-dependent helicase HepA [Vibrio vulnificus YJ016]
 gi|41017628|sp|Q7MHE6|RAPA_VIBVY RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|37199859|dbj|BAC95689.1| RNA polymerase-associated protein HepA [Vibrio vulnificus YJ016]
          Length = 969

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S L R           DK         EG   +L     
Sbjct: 520 QLEQALREREGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-E 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               G N Q+  N LV F L ++ +  +Q I R+      + G KR + ++    Q T  
Sbjct: 567 IGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQKRDIDIHVPYLQGTAQ 620

Query: 178 ELVLQ 182
           E++ +
Sbjct: 621 EVLAR 625


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
              D K + L  +I K N   ++V  ++     +L K               +       
Sbjct: 226 VDEDRKREMLSELIGKKNWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+ EGK  ++ A       GL++Q     +V + + +  E++   + RIG  R  +A
Sbjct: 286 ALEEFKEGKARVMVA-TEVAARGLDIQNLP-YVVNYDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G K
Sbjct: 339 GQK 341


>gi|223934433|ref|ZP_03626354.1| helicase domain protein [bacterium Ellin514]
 gi|223896896|gb|EEF63336.1| helicase domain protein [bacterium Ellin514]
          Length = 952

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 26/174 (14%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKAL-EVIIE--KANAAPI-----IVAYHFNSDLAR- 83
            QLAN A   +     +   D K++A  + + E  +    P+     +    +  +  R 
Sbjct: 443 RQLANFARQLESLSGAQH--DGKLEAAAKTLAEWLRDGFQPVVFCRYLATARYVGEQLRS 500

Query: 84  -LQKAFPQGRT---LDKDPCTIQEW--NE-GKIPL-LFAHPASCGHGLNLQYGGNILVFF 135
            L+  F   R      +DP  ++    N+ GK+P  L         G+NLQ     ++ +
Sbjct: 501 LLKAKFKDLRVEVVTSEDPDDVRRQRVNDLGKVPRRLLVATDCLSEGINLQESFTAVLHY 560

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQ-NTIDELVLQRLRTK 187
            L W+    +Q   R+      + G     V  Y L  + N +D LVL  +  K
Sbjct: 561 DLPWNPNRLEQREGRVD-----RFGQTAEYVKAYLLFGRDNPVDGLVLGVILEK 609


>gi|325299628|ref|YP_004259545.1| helicase domain-containing protein [Bacteroides salanitronis DSM
            18170]
 gi|324319181|gb|ADY37072.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1943

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1514 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1573

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1574 VRAGNEIAKHFAGNNVDVIIY 1594


>gi|294807381|ref|ZP_06766187.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445401|gb|EFG14062.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1938

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1509 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1568

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1569 VRAGNEIAKHFAGNNVDVIIY 1589


>gi|256840942|ref|ZP_05546450.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738214|gb|EEU51540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1943

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1514 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1573

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1574 VRAGNEIAKHFAGNNVDVIIY 1594


>gi|167762748|ref|ZP_02434875.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC 43183]
 gi|167699088|gb|EDS15667.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC 43183]
          Length = 1938

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1509 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1568

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1569 VRAGNEIAKHFAGNNVDVIIY 1589


>gi|53711433|ref|YP_097425.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154490868|ref|ZP_02030809.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC 43184]
 gi|189461180|ref|ZP_03009965.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189464476|ref|ZP_03013261.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
            17393]
 gi|198277329|ref|ZP_03209860.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|218131441|ref|ZP_03460245.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|237713347|ref|ZP_04543828.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|255012137|ref|ZP_05284263.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|262406723|ref|ZP_06083272.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298377030|ref|ZP_06986984.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298483550|ref|ZP_07001726.1| DNA methylase [Bacteroides sp. D22]
 gi|313149979|ref|ZP_07812172.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|329960031|ref|ZP_08298527.1| helicase protein [Bacteroides fluxus YIT 12057]
 gi|46242803|gb|AAS83508.1| BmhA [Bacteroides fragilis]
 gi|52214298|dbj|BAD46891.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154088616|gb|EDN87660.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC 43184]
 gi|189432094|gb|EDV01079.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189438266|gb|EDV07251.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
            17393]
 gi|198269827|gb|EDY94097.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|217986373|gb|EEC52710.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|229446586|gb|EEO52377.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355426|gb|EEZ04517.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298266014|gb|EFI07673.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298270307|gb|EFI11892.1| DNA methylase [Bacteroides sp. D22]
 gi|313138746|gb|EFR56106.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313158596|gb|EFR57990.1| helicase C-terminal domain protein [Alistipes sp. HGB5]
 gi|328533165|gb|EGF59934.1| helicase protein [Bacteroides fluxus YIT 12057]
          Length = 1938

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1509 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1568

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1569 VRAGNEIAKHFAGNNVDVIIY 1589


>gi|163855783|ref|YP_001630081.1| hypothetical protein Bpet1476 [Bordetella petrii DSM 12804]
 gi|163259511|emb|CAP41811.1| conserved plasmid related protein [Bordetella petrii]
          Length = 615

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++    +        RL+    Q               +   
Sbjct: 437 KERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRRED 496

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 497 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 550

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K  V V YL    +     L+ +  K  +   
Sbjct: 551 GQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQS 584


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 24/137 (17%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------ 89
            +  VY  +E       D K + L  +I K N   ++V  ++     +L K         
Sbjct: 219 VSHVVYPVDE-------DRKTELLSELIGKKNWRQVLVFVNYKETANQLVKELKLDGIKA 271

Query: 90  ----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +        ++E+ EGK  ++ A       GL++Q     +V + + +  E++ 
Sbjct: 272 VLCHGDKAQSARRRALEEFKEGKARVMVA-TEVAARGLDIQNLP-YVVNYDMPFLAEDY- 328

Query: 146 QMIERIGVTRQRQAGFK 162
             + RIG  R  +AG K
Sbjct: 329 --VHRIG--RTGRAGQK 341


>gi|322497195|emb|CBZ32268.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 958

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R+    P    + +    +  ++ G+  +      +C  G++L       VF  L  D  
Sbjct: 491 RIDGRVP----VQQRGDLLHAFHRGEARIAVIGITACAVGISL-APAQCAVFCELPPDAA 545

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
             +Q  +R+      + G +  V VYYL+
Sbjct: 546 WMRQAEDRL-----HRPGQRDEVVVYYLL 569


>gi|146079608|ref|XP_001463808.1| SNF2/RAD54 related DNA helicase [Leishmania infantum JPCM5]
 gi|134067896|emb|CAM66177.1| putative SNF2/RAD54 related DNA helicase [Leishmania infantum
           JPCM5]
          Length = 958

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R+    P    + +    +  ++ G+  +      +C  G++L       VF  L  D  
Sbjct: 491 RIDGRVP----VQQRGDLLHAFHRGEARIAVIGITACAVGISL-APAQCAVFCELPPDAA 545

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
             +Q  +R+      + G +  V VYYL+
Sbjct: 546 WMRQAEDRL-----HRPGQRDEVVVYYLL 569


>gi|240147471|ref|ZP_04746072.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
 gi|257200333|gb|EEU98617.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
          Length = 1446

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q   
Sbjct: 1069 DAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREG 1128

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R      RQ      V +Y  + + T D      +  K      ++ +
Sbjct: 1129 R----GIRQGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 1172


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------- 94
           E + +  + D+K+  L+ ++++      +V         R+ K   +   L         
Sbjct: 252 ELRVYTVMQDQKLAQLDKMLKEEEGT-YLVFSRTKHGADRIAKKLEKAGHLTEVIHGDRS 310

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++ +  GK  +L A       G+++ +  + +V + L    ++    + RIG 
Sbjct: 311 QSQRTAALRNFTMGKARILVA-TDVAARGIDVSHIAH-VVNYDLPNGSDDF---VHRIG- 364

Query: 154 TRQRQAGFK 162
            R  +AG K
Sbjct: 365 -RTGRAGAK 372


>gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 558

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           +  GA    E+   +     K + L  I+        +V          +     Q    
Sbjct: 388 IVGGACTDVEQSFIEMSKFSKREQLLDIVRATGMERTMVFVETKRQADFIAAHLCQENVP 447

Query: 91  ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    +  +  GK P+L A  +    GL++    + ++ F L  +++E+
Sbjct: 448 TTSIHGDREQREREMALANFRSGKCPVLVA-TSVAARGLDIPDVQH-VINFDLPNNIDEY 505

Query: 145 QQMIERIGVTRQRQAGF-KRAVFVY 168
              + RIG  R  + G   RAV  Y
Sbjct: 506 ---VHRIG--RTGRCGNVGRAVSFY 525


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQ 102
            K + LE I+ +     ++V          LQ    +            +        + 
Sbjct: 376 HKEEKLEEILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLD 435

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + + +  +L A       GL+++   +++V + +  ++E++   + RIG  R  +AG  
Sbjct: 436 RFRKDERAILVA-TDVAARGLDIKN-LDVVVNYDMPLNIEDY---VHRIG--RTGRAGKT 488

Query: 163 RAVFVYYLIAQN--TIDELVLQRLRTKSTIQDLL 194
              + +   A N  TI +L+   LR K  +   L
Sbjct: 489 GDAYSFVSSADNSKTIRDLIELLLRAKQEVSPEL 522


>gi|291541420|emb|CBL14530.1| Helicase conserved C-terminal domain [Ruminococcus bromii L2-63]
          Length = 515

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++ +LF      G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 166 SGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFPEV 221

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q + +K      ++ +
Sbjct: 222 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 253


>gi|240145260|ref|ZP_04743861.1| putative Helicase [Roseburia intestinalis L1-82]
 gi|257202614|gb|EEV00899.1| putative Helicase [Roseburia intestinalis L1-82]
          Length = 702

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++ +LF      G G N+Q     +      W   + +Q   RI    +RQ      V
Sbjct: 353 SGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQRQGRI----ERQGNMFPEV 408

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY  + + T D  + Q + +K      ++ +
Sbjct: 409 EVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 440


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 15/152 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
            ++ ++   D+K + L  +I++ +   ++V         RL K     R           
Sbjct: 224 AQRAYQVDRDKKPQLLAHLIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKS 283

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  + ++  G + +L A       GL++    + +V + L +  E++   I R G 
Sbjct: 284 QGARTHALAKFKNGSLQVLVA-TDIAARGLDISELPH-VVNYDLPYVPEDYVHRIGRTGR 341

Query: 154 TRQRQAGFKRAVF-VYYLIAQNTIDELVLQRL 184
              R           Y+L+A   I++L+ Q+L
Sbjct: 342 AGARGEAISLVCVDEYHLLAD--IEKLIQQKL 371


>gi|217964542|ref|YP_002350220.1| SNF2 family domain protein [Listeria monocytogenes HCC23]
 gi|217333812|gb|ACK39606.1| SNF2 family domain protein [Listeria monocytogenes HCC23]
 gi|307570892|emb|CAR84071.1| SNF2 family domain protein [Listeria monocytogenes L99]
          Length = 399

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 230 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++        I+   +      LQKAFP                  KI       A   
Sbjct: 276 SLV-AGKEETTIIFCKYKRSEEALQKAFPNV----------------KITTF----AKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 315 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 368

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
              +  K+     LL   KKE
Sbjct: 369 DVNISKKTN----LLQEFKKE 385


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
              D K + L  +I K N   ++V  ++     +L K               +       
Sbjct: 226 VDEDRKREMLSELIGKKNWKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+ EGK  ++ A       GL++Q     +V + + +  E++   + RIG  R  +A
Sbjct: 286 ALEEFKEGKARVMVA-TEVAARGLDIQNLP-YVVNYDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G K
Sbjct: 339 GQK 341


>gi|302327892|gb|ADL27093.1| RNA polymerase-associated protein HepA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 996

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 19/142 (13%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           Y +E+        + ++ALE ++ +       V   F+ D++ + +              
Sbjct: 493 YKNEKVLLICESIQVVQALETLLLEFLGEGAFVM--FHEDMSIMAR-----------DKA 539

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              +++     L         G N Q+  + LV F L  D    +Q I R+      + G
Sbjct: 540 AANFSKPDGANLLIASEIGSEGRNFQFS-HHLVLFDLPLDAALVEQRIGRLD-----RIG 593

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + + ++    + +  E++ +
Sbjct: 594 QDKDIIIHVPYVKGSGQEVMFR 615


>gi|227500536|ref|ZP_03930590.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
 gi|227217364|gb|EEI82693.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
          Length = 2089

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            +  T  +      +   G+I +L       G G N+Q     L    + W   + +Q   
Sbjct: 2005 EADTDKRKDELFSKVRRGEIRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSG 2064

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            RI     RQ      V ++  + +NT D
Sbjct: 2065 RIV----RQGNENDKVNIFRYVTENTFD 2088


>gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
 gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPG 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|303236311|ref|ZP_07322904.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302483523|gb|EFL46525.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 520

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 91  KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 150

Query: 152 GVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETI 203
                   +  AG    V +Y    + ++D      L  K T    L + A++  TI
Sbjct: 151 VRAGNEIAKHFAGNNVDVIIY--AVEKSLDSYKFNLLHCKQTFISQLKSGAMEARTI 205


>gi|212692132|ref|ZP_03300260.1| hypothetical protein BACDOR_01627 [Bacteroides dorei DSM 17855]
 gi|212665253|gb|EEB25825.1| hypothetical protein BACDOR_01627 [Bacteroides dorei DSM 17855]
          Length = 1718

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1289 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1348

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1349 VRAGNEIAKHFAGNNVDVIIY 1369


>gi|210616855|ref|ZP_03291258.1| hypothetical protein CLONEX_03479 [Clostridium nexile DSM 1787]
 gi|210149623|gb|EEA80632.1| hypothetical protein CLONEX_03479 [Clostridium nexile DSM 1787]
          Length = 1089

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 34/180 (18%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA-----RLQKAFPQGRTLDKDPCTI------ 101
           K +AL  I+  E        +   F  D       RL++   Q  TL +   T+      
Sbjct: 777 KEQALVNIVNKELEEKRNCFIYCEFTGDREEAISYRLKQILEQECTLRESEVTVLESANP 836

Query: 102 -----QEWNEGK----IPLLFAHPASCGHGLNLQYGGN-------ILVFFSLWWDLEEHQ 145
                +EW   K      +   +      GL+  +  +        ++F+ + +D+ +  
Sbjct: 837 PALKREEWMHQKASQGTKVFITNAKCVSTGLDFAFRYHGKDYNYPTIIFYQVGYDMIKIW 896

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           Q   R       +   K+    +YL+++ TI    +Q + TK      +      E +  
Sbjct: 897 QASRR-----HYRLNQKKECRTFYLVSECTIQIDAVQLVATKEVATSSIQGQFSAEGLST 951


>gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
 gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|254361970|ref|ZP_04978101.1| SNF2 family helicase [Mannheimia haemolytica PHL213]
 gi|153093517|gb|EDN74497.1| SNF2 family helicase [Mannheimia haemolytica PHL213]
          Length = 970

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE ++ +  A    V +   S + R           DK      +  EG    +    +
Sbjct: 520 ALEQVLREREAIRSAVFHEKMSIVER-----------DKAAAYFAQQEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + LV F+L  + +  +Q I R+      + G K  + +Y
Sbjct: 567 IGSEGRNFQFAKD-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIY 611


>gi|91784597|ref|YP_559803.1| putative, plasmid-related, DNA/RNA helicase [Burkholderia
           xenovorans LB400]
 gi|91688551|gb|ABE31751.1| Putative, plasmid-related, DNA/RNA helicase [Burkholderia
           xenovorans LB400]
          Length = 768

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++    +        RL+    Q               +   
Sbjct: 590 KERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRRED 649

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 650 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 703

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K  V V YL    +     L+ +  K  +   
Sbjct: 704 GQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQS 737


>gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
          Length = 396

 Score = 40.3 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCTIQE 103
           D+K++A+E II       +I+  +    + RL     QG             K    +Q 
Sbjct: 252 DQKLEAVERIITDTTVEKVIIFANRKDQVKRLYHKLRQGHKIVMLSGDVIQQKREKYLQR 311

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +G   +L A     G G+++    + ++ ++L    +++   + RIG  R  +AG  
Sbjct: 312 FKDGHASVLVA-TDVAGRGIHVDDVSH-VINYTLPDQPDDY---VHRIG--RTGRAGKT 363


>gi|325959290|ref|YP_004290756.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325330722|gb|ADZ09784.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 1048

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDP 98
            D K++ L+ I+++      I+   F + L  L                  +G+++    
Sbjct: 633 DDTKLEQLKEILKENPDKKCIIFTEFFATLEYLTINLKNDFSVDYVAGVNFKGQSMKPSS 692

Query: 99  CT--IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               I+ +  G              G NL    +I+V + L ++  +  Q + R   
Sbjct: 693 KDRKIKRFKAGYFQ-HLISTDVLAEGFNLPE-ADIVVNYDLPYNPVKIIQRVGRATR 747


>gi|302892967|ref|XP_003045365.1| hypothetical protein NECHADRAFT_106221 [Nectria haematococca mpVI
            77-13-4]
 gi|256726290|gb|EEU39652.1| hypothetical protein NECHADRAFT_106221 [Nectria haematococca mpVI
            77-13-4]
          Length = 1446

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             ++ A P    +      IQ +N     +  L       G G+NL    +  +      +
Sbjct: 1188 HIRSAHPMAERV----KAIQAFNNPNEDVGALITTFQLAGFGINLHGACHHGIIVEYPQN 1243

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            L      I R+      + G   +V    L  +N+ D   + R+  K  
Sbjct: 1244 LSTILHAIGRLW-----RLGQTNSVKPDILYQRNSFDAYQISRMAQKHA 1287


>gi|183221905|ref|YP_001839901.1| putative DNA repair helicase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911974|ref|YP_001963529.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776650|gb|ABZ94951.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780327|gb|ABZ98625.1| Putative DNA repair helicase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 565

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-----WNEGK 108
           EK++A+  I++K +   I+V   + + L  +   F       K P   ++     +  G+
Sbjct: 405 EKLRAISYILKKHSTNNILVIGQYINQLEEISNTFKIPLITGKTPLPERQELYQAFRTGQ 464

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I  L          ++L      +     +   +E  Q + RI   +            Y
Sbjct: 465 IKQLVVS-KVANFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKA----QDNTAIFY 519

Query: 169 YLIAQNTIDEL 179
            LI+++T +E 
Sbjct: 520 SLISRDTNEER 530


>gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4]
 gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           +EK+  L  ++E+      IV  +      ++                     K    ++
Sbjct: 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G+I +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTKGEIDILVA-TDVAARGLHIADVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 AXGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|325269958|ref|ZP_08136567.1| DNA methylase [Prevotella multiformis DSM 16608]
 gi|324987681|gb|EGC19655.1| DNA methylase [Prevotella multiformis DSM 16608]
          Length = 1954

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1520 KTDKARKGVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1579

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1580 VRAGNEIAKHFAGNNVDVIIY 1600


>gi|323701530|ref|ZP_08113203.1| ATP-dependent DNA helicase, RecQ family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533539|gb|EGB23405.1| ATP-dependent DNA helicase, RecQ family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 685

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 54  EKIKALEVIIEKANAAPII----------VAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            K++AL +++   + + II          VA    S L      +  G T ++     + 
Sbjct: 218 AKLQALTLVLAGLSGSGIIYTATRKETEEVAAFLISQLKLPAAPYHAGMTPEQRAAVQES 277

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G+ P++ A   + G G++ Q     ++ +S+   +E + Q + R       + G   
Sbjct: 278 FINGEYPVVVA-TNAFGMGIDKQD-IRFVIHYSMPASIEAYYQEVGR-----AGRDGQPA 330

Query: 164 AVF 166
              
Sbjct: 331 TCT 333


>gi|313609003|gb|EFR84742.1| SNF2 family protein [Listeria monocytogenes FSL F2-208]
          Length = 168

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 31/151 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E ++        I+   +      LQKAFP                  KI 
Sbjct: 35  LSSEKFTITESLV-AGKEETTIIFCKYKRSEEALQKAFPNV----------------KIT 77

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 78  TF----AKSSYGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 127

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +D L+   +  K+     LL   KKE
Sbjct: 128 SGNVGLDSLIDVNISKKTN----LLQEFKKE 154


>gi|261493688|ref|ZP_05990207.1| SNF2 family helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494355|ref|ZP_05990849.1| SNF2 family helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310004|gb|EEY11213.1| SNF2 family helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310688|gb|EEY11872.1| SNF2 family helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 970

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE ++ +  A    V +   S + R           DK      +  EG    +    +
Sbjct: 520 ALEQVLREREAIRSAVFHEKMSIVER-----------DKAAAYFAQQEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + LV F+L  + +  +Q I R+      + G K  + +Y
Sbjct: 567 IGSEGRNFQFAKD-LVLFNLPDNPDLLEQSIGRLD-----RIGQKNDIQIY 611


>gi|261414603|ref|YP_003248286.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371059|gb|ACX73804.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 995

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 19/142 (13%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           Y +E+        + ++ALE ++ +       V   F+ D++ + +              
Sbjct: 492 YKNEKVLLICESIQVVQALETLLLEFLGEGAFVM--FHEDMSIMAR-----------DKA 538

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              +++     L         G N Q+  + LV F L  D    +Q I R+      + G
Sbjct: 539 AANFSKPDGANLLIASEIGSEGRNFQFS-HHLVLFDLPLDAALVEQRIGRLD-----RIG 592

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + + ++    + +  E++ +
Sbjct: 593 QDKDIIIHVPYVKGSGQEVMFR 614


>gi|154493718|ref|ZP_02033038.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
 gi|154086928|gb|EDN85973.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
          Length = 436

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 18/145 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLD 95
           +  K    +K++ L  ++ +      ++  ++   + R+           + F  G    
Sbjct: 207 RVVKSPVKDKLETLYKLLGELKGGSALIFCNYRETVERVSNYLTEMGVDNEYFHGGMEQP 266

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    +  +  G   +          GL++    N ++ + L    E +     R     
Sbjct: 267 ERERALSHFRNGSATVF-ISTDLASRGLDIPEVKN-VIHYHLPVSEEAYVHRNGRTARMN 324

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELV 180
                    V    L A+ TI E +
Sbjct: 325 A------EGVAYLILNAEETIPEYI 343


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 24/125 (19%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQGRTLDKD 97
           +  K++AL  ++E      +I+                    D+A L    PQ    ++ 
Sbjct: 306 NSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQ----NQR 361

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T++   +G + +L A       GL++    ++++ + + +D E +   + RIG T R 
Sbjct: 362 ERTVERLRKGSVNILVA-TDVAARGLDV-DRISLVINYDIPFDSEAY---VHRIGRTGRA 416

Query: 157 RQAGF 161
            ++G 
Sbjct: 417 GRSGE 421


>gi|237719902|ref|ZP_04550383.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229450454|gb|EEO56245.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 651

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 278 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 337

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   R    G T +   G    + +Y    + T+D      L+ K  
Sbjct: 338 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLKNKQM 382


>gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3]
 gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 437

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           +EK+  L  ++E+      IV  +      ++                     K    ++
Sbjct: 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++  G I +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTSGDIDVLVA-TDVAARGLHIADVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 24/125 (19%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQGRTLDKD 97
           +  K++AL  ++E      +I+                    D+A L    PQ    ++ 
Sbjct: 306 NSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQ----NQR 361

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T++   +G + +L A       GL++    ++++ + + +D E +   + RIG T R 
Sbjct: 362 ERTVERLRKGSVNILVA-TDVAARGLDV-DRISLVINYDIPFDSEAY---VHRIGRTGRA 416

Query: 157 RQAGF 161
            ++G 
Sbjct: 417 GRSGE 421


>gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------ 89
            N      E   +      K + L  +I K N   ++V  +       L K         
Sbjct: 211 TNSTASTVEHVVYPVEERRKQELLSELIGKKNWQQVLVFVNMKETADELVKELNLDGIPA 270

Query: 90  ----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++       ++E+ EGK+ +L A       G+++  G   ++   L W  E++ 
Sbjct: 271 GVCHGDKSQGNRRRALREFKEGKVRVLVA-TEVAARGIDI-DGLPRVINIDLPWLAEDY- 327

Query: 146 QMIERIGVT-RQRQAGF 161
             + RIG T R  + G 
Sbjct: 328 --VHRIGRTGRAGRQGQ 342


>gi|269957110|ref|YP_003326899.1| helicase domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305791|gb|ACZ31341.1| helicase domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 1095

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 95  DKDPCTIQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           ++   T   +N       I +L A   + G G++LQ   + LV F + ++    +Q I R
Sbjct: 605 EERELTRARFNADPAKESIRVLVA-TDAAGEGIDLQAFCHRLVNFDVPFNPSRLEQRIGR 663

Query: 151 IGVTRQRQAGFKRAVFVYYLI---AQNTI--DELVLQRLRTK-STIQDLL 194
           I      + G + A  V+  +      T   D   ++R+  K + + D L
Sbjct: 664 ID-----RYGQQHAPEVFQFLPDATSGTFAGDMDFMRRIAEKVANVADDL 708


>gi|253567328|ref|ZP_04844777.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251943897|gb|EES84425.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 830

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 457 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 516

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 517 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 561


>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
 gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
          Length = 772

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 32/167 (19%)

Query: 55  KIKALEVII-EKANAAP---IIVAYHFNSDLARLQKAF------------------PQGR 92
           K+  L+ +I  +    P   IIV  ++     ++ K                     +G 
Sbjct: 344 KLDKLKELIRSQLKKKPSSKIIVFTNYRETAKKIVKELLEDHIKAVRFVGQASKENDKGL 403

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  K    +  +++G+  +L A  +    GL++    ++++F+          Q      
Sbjct: 404 SQKKQKQVLNLFSQGEFNVLVA-TSVGEEGLDVPE-VDLVIFYEPVPSAIRSIQ------ 455

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R+ + G  +   V  L+A+ T DE+     R K      +L  ++
Sbjct: 456 --RKGRTGRHKPGRVVILMAKGTRDEIYYWSSRHKEKQMISILEKVE 500


>gi|242219722|ref|XP_002475637.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725158|gb|EED79158.1| predicted protein [Postia placenta Mad-698-R]
          Length = 457

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 80  DLARLQKAFPQGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI--LVFFS 136
           D   L+         D+D   T+QEW  G   ++ A  A  G G+     GN+  ++ ++
Sbjct: 260 DKYGLKARHYHAGLDDRDRTVTMQEWKRGDFKIIVATIA-LGMGI---DKGNVRFVIHYA 315

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY------YLIAQNTIDELVLQRLRTKS 188
           +   LE + Q        R  + G      +Y      + + +   +E + +  + K 
Sbjct: 316 MPSSLEGYYQ-----ETGRAGRDGKPADCILYYSGSDAHPVWRRINEESIPETEKEKQ 368


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 30/170 (17%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKD------PCTIQE 103
            K  AL +++        +V  +    +  L +A      Q   L  D         +  
Sbjct: 209 RKTDALRLLLLAYEPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNA 268

Query: 104 WNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
           +  G+I +L A   A+ G  +N   G +++  + L  D E +   I RIG T R  ++G 
Sbjct: 269 FKSGRIGVLVATDVAARGIDVN---GIDLVFNYDLPQDNEYY---IHRIGRTGRAGKSGT 322

Query: 162 -------KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                  +R VF    IA+ T  E++ + L T++ +      A K + +H
Sbjct: 323 ALTLVSGRRQVFALRDIAKYTKAEIIQKALPTRADLA-----AKKTQQLH 367


>gi|282881655|ref|ZP_06290318.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304414|gb|EFA96511.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
          Length = 1932

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1503 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1562

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1563 VRAGNEIAKHFAGNNVDVIIY 1583


>gi|258648634|ref|ZP_05736103.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260851424|gb|EEX71293.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 1946

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1517 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1576

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1577 VRAGNEIAKHFAGNNVDVIIY 1597


>gi|255514192|gb|EET90454.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 517

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 26/151 (17%)

Query: 55  KIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCT 100
           K+  +  I+ ++  +   I+   + S + +L                   G T +    T
Sbjct: 351 KMWMIADILRQQGASKSTIIFVQYRSTIKKLVDILNGEGISAMAFVGKNNGVTQEMQSST 410

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++++  GK  +L A  +    GL++    ++++F+        + Q   R G  R  +  
Sbjct: 411 LEKFRSGKFKVLVAS-SIGEEGLDI-PSVDMVIFYEPIPSAIRNIQRKGRTGRFRFGE-- 466

Query: 161 FKRAVFVYYLIAQNTIDEL--VLQRLRTKST 189
                 V  L+ + T DE   ++ RL+ K  
Sbjct: 467 ------VMILVTRGTKDEAYLMVSRLKEKRM 491


>gi|227535801|ref|ZP_03965850.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244289|gb|EEI94304.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1811

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            A N A    K  +Q     V+ D        W    + K K +E      +  P      
Sbjct: 1354 AANIAKYYNKFNVQKGTQFVFSDLGTYKPNEWNVYSEIKRKLVED-----HGIPA----- 1403

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               ++  +Q+     +   +    I   N GKI +LF   +  G G+N Q     +    
Sbjct: 1404 --HEIRFIQE----AKNDKQRKELINGMNSGKIRVLFGSTSMLGTGVNAQKRAVAVHHLD 1457

Query: 137  LWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              W   +  Q   R         +     K  V +Y    + ++D      L  K     
Sbjct: 1458 TPWRPSDLAQRDGRAIRKGNEIAKHFNNNKVDVIIY--AVEKSLDSYKFNLLYNKQ---- 1511

Query: 193  LLLNALKKETIH 204
            L +N LK   + 
Sbjct: 1512 LFINQLKSNNLG 1523


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 15/116 (12%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEW 104
           KI  L  +I++   + ++V         R+     + +            +     + ++
Sbjct: 227 KISLLTSLIKEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDF 286

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            EGKI +L A       G+++    + +V + +    E +   I RIG T +   G
Sbjct: 287 KEGKIKVLVA-TDIAARGIDISE-LSYVVNYDIPNQAEIY---IHRIGRTGRAGLG 337


>gi|296163999|ref|ZP_06846624.1| helicase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900651|gb|EFG80032.1| helicase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 1750

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR-- 163
             G + +L       G G+N+Q     L    + W   + +Q   RI    QRQ       
Sbjct: 1328 RGDVSVLIGSTEKIGAGVNVQARAAALHHVDVPWRPRDLEQREGRI----QRQGNQNLDG 1383

Query: 164  -AVFVYYLIAQNTIDELVLQRLRTK 187
              +F+Y  + + + D ++ Q+++ K
Sbjct: 1384 IDIFIY--VTEGSYDTVMWQKVQAK 1406


>gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB
 gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli]
 gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli]
 gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli]
 gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli]
 gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli]
 gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           G5101]
 gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str.
           493-89]
 gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H
           2687]
 gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1125]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|294644985|ref|ZP_06722718.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292639676|gb|EFF57961.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 765

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 392 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 451

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 452 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 496


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 26/173 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+  +  R+   D     I +   +         A+  +    E   +    +++     
Sbjct: 300 KEVKQLARDYLTDPIQVQIGSLELS---------ASHTIKQVVEVISEFEKRDRLSKHLE 350

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCT--IQEWNEGKIPL 111
           I  +   + ++V          + +   Q            D+      ++E+  G+ P+
Sbjct: 351 IASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGRSPI 410

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           + A       G+++  G N ++ + +  ++E++   + RIG  R  +AG K  
Sbjct: 411 MVA-TDVAARGIDV-KGINYVINYDMPGNIEDY---VHRIG--RTGRAGAKGT 456


>gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197]
 gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
 gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|40019205|emb|CAE92929.1| putative DNA/RNA helicase [Pseudomonas putida]
          Length = 759

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA    ++    +        RL+    Q               +   
Sbjct: 581 KERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K  V V YL    +     L+ +  K  +   
Sbjct: 695 GQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQS 728


>gi|324574098|gb|ADY49923.1| Transcription regulatory protein SNF2 [Ascaris suum]
          Length = 68

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           + +  +      + G GLNLQ   + ++ F   W+ 
Sbjct: 20  DSEYFIFILSTRAGGLGLNLQT-ADTVIIFDSDWNP 54


>gi|256838486|ref|ZP_05543996.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739405|gb|EEU52729.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1944

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1508 KTDKARKGVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1567

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +  AG    V +Y
Sbjct: 1568 VRAGNEIAKHFAGNNVDVIIY 1588


>gi|317145448|ref|XP_001820788.2| hypothetical protein AOR_1_372144 [Aspergillus oryzae RIB40]
          Length = 583

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFA 114
           +    +V   F ++   +     +          G T D+    ++ + +   +  +L  
Sbjct: 388 HGEKAMVWTQFPAEQIYVAAILKEANIDAEVFHAGLTRDERMNLVERFTQKHDECMVLIC 447

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  G+NLQ     +   ++        Q I R+      + G +R  FVY    ++
Sbjct: 448 AYNVNAAGMNLQNLCRNVHILTMGLSKSVVNQAIGRVS-----RLGQERMTFVYEYRLRS 502

Query: 175 TIDELVLQRLRTKS 188
           + DE ++ R   K+
Sbjct: 503 SFDEDLVSRSERKA 516


>gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50]
          Length = 425

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 202 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 261

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 262 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 320

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 321 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 360


>gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
 gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
          Length = 427

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 204 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 263

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 264 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 322

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 323 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 362


>gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
 gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|83768649|dbj|BAE58786.1| unnamed protein product [Aspergillus oryzae]
          Length = 889

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFA 114
           +    +V   F ++   +     +          G T D+    ++ + +   +  +L  
Sbjct: 694 HGEKAMVWTQFPAEQIYVAAILKEANIDAEVFHAGLTRDERMNLVERFTQKHDECMVLIC 753

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  G+NLQ     +   ++        Q I R+      + G +R  FVY    ++
Sbjct: 754 AYNVNAAGMNLQNLCRNVHILTMGLSKSVVNQAIGRVS-----RLGQERMTFVYEYRLRS 808

Query: 175 TIDELVLQRLRTKS 188
           + DE ++ R   K+
Sbjct: 809 SFDEDLVSRSERKA 822


>gi|330952513|gb|EGH52773.1| DEAD/DEAH box helicase [Pseudomonas syringae Cit 7]
          Length = 752

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRIKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQNVRV 695


>gi|157865532|ref|XP_001681473.1| SNF2/RAD54 related DNA helicase [Leishmania major strain Friedlin]
 gi|68124770|emb|CAJ02339.1| putative SNF2/RAD54 related DNA helicase [Leishmania major strain
           Friedlin]
          Length = 958

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +    +  ++ G+  +      +C  G++L       VF  L  D    +Q
Sbjct: 491 CIDGRVPVQQRGDLLHAFHRGEAGIAVIGITACAVGISL-APAQCAVFCELPPDAAWMRQ 549

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLI 171
             +R+      + G +  V VYYL+
Sbjct: 550 AEDRL-----HRPGQREEVVVYYLL 569


>gi|319641273|ref|ZP_07995972.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317387146|gb|EFV68026.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1661

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKRLFEDMNSGRVRVLFGSTSMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      L+ K  
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIIIYG--TEKTLDAYKFNLLKNKQM 1390


>gi|71280630|ref|YP_271167.1| ATP-dependent helicase HepA [Colwellia psychrerythraea 34H]
 gi|71146370|gb|AAZ26843.1| RNA polymerase-associated protein HepA [Colwellia psychrerythraea
           34H]
          Length = 975

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 18/130 (13%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVA---YHFNSDLA---RLQK------AFPQGRTLDKDP 98
             D ++  L  +++      ++V         DL    R+++              ++D 
Sbjct: 493 DFDPRVDYLIDLLQSLKREKVLVICANAQTAIDLEAVLRIKEGIRSAVFHEGLSIFERDK 552

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +     L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 553 AAAYFAQDEDSAQLLLCSEIGSEGRNFQF-AHHLVLFDLPSNPDLLEQRIGRLD-----R 606

Query: 159 AGFKRAVFVY 168
            G    + ++
Sbjct: 607 IGQTEIIRIH 616


>gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|320178071|gb|EFW53051.1| ATP-dependent RNA helicase RhlB [Shigella boydii ATCC 9905]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 28/160 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +  +++  + +   I+   + ++  K  Q    A+Y+  +        +K+K L  +IE 
Sbjct: 195 ELSQKILGEFEQVTIKPEQATAE--KVEQ----AIYFVPKG-------DKVKLLVHLIET 241

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFAH 115
             A  ++V         ++ K   +           ++       + ++ +GK+ +L A 
Sbjct: 242 KEAKAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVA- 300

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 G+++    +++V + L    E +   + RIG T 
Sbjct: 301 TDIAARGIDIDD-LSLVVNYDLPNVPETY---VHRIGRTG 336


>gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026]
 gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227]
 gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
 gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           ++  +    D+K   L+ +IE       I+  +   +   L +   + +           
Sbjct: 285 DQVIYTVEADQKWPVLKSLIEDDGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVS 344

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            DK   T++ + +G+I +L A     G G+++     ++V ++L  D E++   + RIG 
Sbjct: 345 QDKRVKTLKNFKDGRIQVLVA-TDVAGRGIHV-DNIELVVNYTLPEDPEDY---VHRIG- 398

Query: 154 TRQRQAGF 161
            R  + G 
Sbjct: 399 -RTGRGGE 405


>gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
 gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
          Length = 427

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 204 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 263

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 264 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 322

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 323 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 362


>gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39]
 gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|50955355|ref|YP_062643.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951837|gb|AAT89538.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 546

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 10/157 (6%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-----FP 89
           L+  A   DE          K + +  ++E+     I+V   +   +  L +A       
Sbjct: 376 LSYAAAADDERYRLAATAPAKQEVVRRLVERHAGERILVIGQYLDQIDELAEALGAPQLT 435

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +++     QE+ EG  P+L          ++L      +     +   +E  Q + 
Sbjct: 436 GATAVEERERLYQEFREGTTPVLVVS-KVANFSVDLPEATVAIQVSGSYGSRQEEAQRLG 494

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           R+   R +++G       Y L+A++T+D+   Q  + 
Sbjct: 495 RL--LRPKESGLSAN--FYTLVARDTVDQDFAQNRQR 527


>gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301]
 gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073]
 gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T]
 gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046]
 gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89]
 gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1]
 gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739]
 gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11]
 gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1]
 gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88]
 gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a]
 gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989]
 gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606]
 gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9]
 gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B]
 gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073]
 gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1]
 gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11]
 gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82]
 gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA
           degradosome and degradosome [Escherichia coli BL21(DE3)]
 gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15]
 gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri
           2002017]
 gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034]
 gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146]
 gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T]
 gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1]
 gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431]
 gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327]
 gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B]
 gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010]
 gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68]
 gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357]
 gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1]
 gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86]
 gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           +K +AL  +I+  +    IV       +  L +A  +            + ++    +++
Sbjct: 226 QKFEALSRLIDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRK 285

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
           + +G I +L A       GL++  G   +V F L  D E +   + RIG T R  + G  
Sbjct: 286 FRDGSIDVLVA-TDVAARGLDV-SGVTHVVNFDLPQDPESY---VHRIGRTGRAGKEGEA 340

Query: 163 ----RAVFVYYL-----IAQNTIDEL----VLQRLRTK-STIQDLLLNALKK 200
                   + +L     + ++ I       + + L  K   I + LL  ++K
Sbjct: 341 WSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGKQRIIAERLLEVVEK 392


>gi|294810382|ref|ZP_06769041.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442419|gb|EFG11227.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 723

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 350 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 409

Query: 146 QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 410 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 454


>gi|170728646|ref|YP_001762672.1| ATP-dependent helicase HepA [Shewanella woodyi ATCC 51908]
 gi|254789697|sp|B1KJA5|RAPA_SHEWM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|169813993|gb|ACA88577.1| SNF2-related protein [Shewanella woodyi ATCC 51908]
          Length = 968

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 20/144 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   +++     +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIDFLKENRREKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                   G    L         G N Q+  + L+ F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQETGGAQALICS-EIGSEGRNFQF-ASQLILFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G    V ++    ++T  E ++Q
Sbjct: 601 IGQNNDVSIHVPYLEDTAQESLMQ 624


>gi|323167634|gb|EFZ53339.1| ATP-dependent RNA helicase rhlB [Shigella sonnei 53G]
 gi|323938919|gb|EGB35138.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|332089067|gb|EGI94178.1| ATP-dependent RNA helicase rhlB [Shigella boydii 3594-74]
          Length = 361

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 138 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 197

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 198 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 256

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 257 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 296


>gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
 gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|325297578|ref|YP_004257495.1| helicase domain-containing protein [Bacteroides salanitronis DSM
            18170]
 gi|324317131|gb|ADY35022.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1657

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T         + N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 1284 QFIQCAQTERARKKLFADMNSGRVRVLFGSTSMLGTGVNAQQRAVAVHHLEVPWRPADLE 1343

Query: 146  QMIERI---GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R    G T +   G    + +Y    + T+D      LR K  
Sbjct: 1344 QRNGRAVRKGNTVKLWGGNVVDIVIYG--TEKTLDAYKFNLLRNKQM 1388


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQ 90
             GA    E+   +     K   L   ++       +V          +     Q+  P 
Sbjct: 244 VGGACTDVEQTFVQVTKFSKRDQLLEFLKTTGTERTMVFVETKRQADFIALFLCQEKVPT 303

Query: 91  G-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++    + +V F L  +++E+ 
Sbjct: 304 TSIHGDREQPEREKALADFRSGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPNNIDEYV 361

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 362 HRIGRTGRCG 371


>gi|238798893|ref|ZP_04642359.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
 gi|238717247|gb|EEQ09097.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|154494255|ref|ZP_02033575.1| hypothetical protein PARMER_03605 [Parabacteroides merdae ATCC
           43184]
 gi|154086117|gb|EDN85162.1| hypothetical protein PARMER_03605 [Parabacteroides merdae ATCC
           43184]
          Length = 949

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           K       +D+    +  +      ++ A   S   G+NLQ+  ++LV + + W+ +  +
Sbjct: 476 KRISGRTIIDRKQALVDHFRT-DAEIMIA-TESGAEGINLQF-CSLLVNYDMPWNPQRIE 532

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLL 195
           Q I R       + G K  V V   + Q N  D  V + L  K  + + + 
Sbjct: 533 QRIGRC-----HRYGQKFDVVVVNFVNQLNYADCRVYELLNEKFNLFEGVF 578


>gi|113461657|ref|YP_719726.1| ATP-dependent helicase HepA [Haemophilus somnus 129PT]
 gi|123327467|sp|Q0I5G1|RAPA_HAES1 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|112823700|gb|ABI25789.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
          Length = 966

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S + R           D+      +  EG   LL +   
Sbjct: 517 QLEQALREKEGIRSAVFHENMSIIER-----------DRASAYFAQQEEGAQVLLSSSIG 565

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           S G   N Q+  + LV F L  + +  +Q I R+      + G +R + +Y
Sbjct: 566 SEGR--NFQFACH-LVLFHLPNNPDLLEQCIGRLD-----RIGQRRDIQIY 608


>gi|238794287|ref|ZP_04637900.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
 gi|238726371|gb|EEQ17912.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
          Length = 428

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|313889321|ref|ZP_07822970.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122312|gb|EFR45402.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 119

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+I +L       G G N+Q     L    + W   + +Q   RI     RQ    + V
Sbjct: 42  KGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV----RQGNENKEV 97

Query: 166 FVYYLIAQNTID 177
            +Y  + +NT D
Sbjct: 98  NIYRYVTENTFD 109


>gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25]
 gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 407

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 29/165 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IEA N AS+ V             E+  +     +K K L  ++   
Sbjct: 218 LAKQWTTDPSIVEIEALNVASENV-------------EQHIYAVAGADKYKLLYNLVNDN 264

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
               ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 265 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA-T 323

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
              G G+++  G + ++ F+L    +++   + RIG T R   AG
Sbjct: 324 DVAGRGIHI-DGISHVINFTLPEVPDDY---VHRIGRTGRAGAAG 364


>gi|37680764|ref|NP_935373.1| DNA helicase [Vibrio vulnificus YJ016]
 gi|37199513|dbj|BAC95344.1| DNA helicase [Vibrio vulnificus YJ016]
          Length = 704

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTI 101
           +++K  AL  I+++A  AP IV        +++                           
Sbjct: 279 NEDKADALLKIVQQAPNAPTIVYVTLQHTASQVATLLQDEGIRASAYHAGLDNELRSTIQ 338

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++ +G++  + A  A  G G++ +     ++ F L   +E + Q I R       + G 
Sbjct: 339 TQFMQGQLDCIVATIA-FGMGVD-KANIRRVIHFDLPKSIENYAQEIGR-----AGRDGQ 391

Query: 162 KRAVFV 167
           K    V
Sbjct: 392 KSDCIV 397


>gi|260592907|ref|ZP_05858365.1| putative DNA methylase [Prevotella veroralis F0319]
 gi|260535107|gb|EEX17724.1| putative DNA methylase [Prevotella veroralis F0319]
          Length = 500

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 64  KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 120

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
              ++      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 121 RAVVIHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNL 178

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 179 LHNKQ----LFINQLKTNTLG 195


>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
           20469]
          Length = 450

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 54  EKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
           +K + L+ +I+  + AP  ++V     S +  + K               R        +
Sbjct: 260 QKPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAGLKVDVMHADRPQKARAKAL 319

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
             +    I +L A       G+++Q G ++++ F +  D E++   + RIG T R    G
Sbjct: 320 DRFRSASIQILVA-TDVMSRGIDIQ-GIDVVINFDVPLDPEDY---VHRIGRTGRAGATG 374

Query: 161 FKRA 164
               
Sbjct: 375 QAYT 378


>gi|58266262|ref|XP_570287.1| hypothetical protein CND01470 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226520|gb|AAW42980.1| hypothetical protein CND01470 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1586

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 72   IVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            ++  +++  L  + +A          F QG+   K    + ++   + I +   H     
Sbjct: 1424 VIFSNWSDSLNIVMQALRLNGISFASFDQGK---KQKDVVDQFLRDESISVFLLHAERES 1480

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GL L    +++             Q I R+      + G ++   V+     +T++  +
Sbjct: 1481 SGLTLT-SCHVVHLLEPVLRHSFELQAIGRVD-----RLGQEKETSVFCYATMDTVESRI 1534

Query: 181  L 181
            L
Sbjct: 1535 L 1535


>gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA    E+   +     K + L  +++       IV          +     Q+  P
Sbjct: 498 IVGGACSDVEQTFIEVGKFSKREQLLDLVKTCGNERTIVFVEKKRQADFIATFLCQENVP 557

Query: 90  QG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    + ++  GK P+L A  +    GL++    + +V F L   ++E+
Sbjct: 558 TTSIHGDREQWQREQALADFKYGKCPVLVA-TSVAARGLDIPDVQH-VVNFDLPGSIDEY 615

Query: 145 QQMIERIGVTR 155
              I R G   
Sbjct: 616 VHRIGRTGRCG 626


>gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469]
 gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
 gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227]
 gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v]
 gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|170718602|ref|YP_001783804.1| ATP-dependent helicase HepA [Haemophilus somnus 2336]
 gi|189029418|sp|B0URM0|RAPA_HAES2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|168826731|gb|ACA32102.1| SNF2-related protein [Haemophilus somnus 2336]
          Length = 966

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S + R           D+      +  EG   LL +   
Sbjct: 517 QLEQALREKEGIRSAVFHENMSIIER-----------DRASAYFAQQEEGAQVLLSSSIG 565

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           S G   N Q+  + LV F L  + +  +Q I R+      + G +R + +Y
Sbjct: 566 SEGR--NFQFACH-LVLFHLPNNPDLLEQCIGRLD-----RIGQRRDIQIY 608


>gi|238591616|ref|XP_002392657.1| hypothetical protein MPER_07728 [Moniliophthora perniciosa FA553]
 gi|215459031|gb|EEB93587.1| hypothetical protein MPER_07728 [Moniliophthora perniciosa FA553]
          Length = 180

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 19/99 (19%)

Query: 59  LEVIIEKANA----APIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTI 101
           L   + ++N        ++       L  ++                  G   +K    +
Sbjct: 83  LIDTVPESNGAFSQHRCLIFCQMKQMLDIIESDLFKQHMPSVTYMRLDGGTEANKRHAIV 142

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           Q +N +  I  L       G GL L  G + ++F    W
Sbjct: 143 QTFNSDPSIDCLLLTTHVGGLGLTLT-GADTVIFVEHDW 180


>gi|150389915|ref|YP_001319964.1| helicase domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149949777|gb|ABR48305.1| helicase domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 856

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    ++ + E K+ +L  +P +    ++L    +  +++   ++L    Q  +RI   
Sbjct: 727 KERELILKLFKEKKLDVLITNPHTLAESVSLHSACHNAIYYEYSYNLVHLLQSKDRI--- 783

Query: 155 RQRQAGF--KRAVFVYYL----IAQN----TIDELVLQRLRTKSTIQDLLLNALKKETI 203
              + G    +    YYL    + ++    ++D+ + +RL  K  I    +   K E +
Sbjct: 784 --HRLGLPDNQYTQYYYLQNEFLTRDNEVFSLDKKIYERLHEKERIMLQAIENNKLEQL 840


>gi|40445356|ref|NP_954816.1| helicase [Gordonia westfalica]
 gi|40217386|emb|CAE09137.1| putative helicase; putative methylase [Gordonia westfalica]
          Length = 1630

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G+N+Q     L    + W   + +Q   RI     RQ      +
Sbjct: 1170 AGRIAVLVGSTSKMGTGMNVQGRLIGLHHMDVPWRPADLEQREGRII----RQGNQNPRI 1225

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +   +   T D ++  ++ +K+      +   K+
Sbjct: 1226 EILNYVTAGTTDTVMWSKVESKA----AFIEQAKR 1256


>gi|186687127|ref|YP_001870270.1| helicase domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186469430|gb|ACC85229.1| helicase domain protein [Nostoc punctiforme PCC 73102]
          Length = 946

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ   + ++ + L W+    +Q   RI    Q     K  +        N +D  VL
Sbjct: 555 GVNLQTHFSAVIHYDLPWNPNRLEQREGRIDRYGQTATKVKACLLYGR---DNPVDGAVL 611

Query: 182 QRLRTKS 188
             L  K+
Sbjct: 612 DVLIRKA 618


>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 487

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 29/165 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IEA N AS+ V             E+  +     +K K L  ++   
Sbjct: 298 LAKQWTTDPAIVEIEAENVASENV-------------EQHIYAVAGADKYKLLYNLVNDN 344

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
               ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 345 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA-T 403

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
              G G+++  G + ++ F+L    +++   + RIG T R   AG
Sbjct: 404 DVAGRGIHI-DGISHVINFTLPEVPDDY---VHRIGRTGRAGAAG 444


>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 418

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
           EK+  L  ++E+      IV  +      ++                     K    + +
Sbjct: 242 EKMHLLLTLMEEEWPEKAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQ 301

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +G I +L A       GL++    + +  F L  D E++   + RIG  R  +AG K
Sbjct: 302 FTDGDIDVLVA-TDVAARGLHIPKVSH-VFNFDLPDDCEDY---VHRIG--RTGRAGQK 353


>gi|78190817|gb|ABB29730.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Monosiga brevicollis]
          Length = 171

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 15/89 (16%)

Query: 67  NAAPIIVAYHFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWNE-GKIPLL 112
                ++     + L  +Q             +    G    +    + E+NE   I +L
Sbjct: 82  GRHRALIFAQQRAFLDIVQEELLDKHLPEVTYRRLDGGVPAQQRHDIVVEFNEDPSIDVL 141

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               +  G GL L  G + ++F    W+ 
Sbjct: 142 LLTTSVGGLGLTLT-GADTVIFLEHDWNP 169


>gi|262163841|ref|ZP_06031581.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus VM223]
 gi|262027821|gb|EEY46486.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus VM223]
          Length = 347

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           +D K+  L+ ++E+      I+  +      ++                     K    +
Sbjct: 151 NDHKMALLQTLVEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 210

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 211 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 265

Query: 161 FK 162
             
Sbjct: 266 HS 267


>gi|134111228|ref|XP_775756.1| hypothetical protein CNBD4850 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258420|gb|EAL21109.1| hypothetical protein CNBD4850 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1656

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 72   IVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            ++  +++  L  + +A          F QG+   K    + ++   + I +   H     
Sbjct: 1494 VIFSNWSDSLNIVMQALRLNGISFASFDQGK---KQKDVVDQFLRDESISVFLLHAERES 1550

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GL L    +++             Q I R+      + G ++   V+     +T++  +
Sbjct: 1551 SGLTLT-SCHVVHLLEPVLRHSFELQAIGRVD-----RLGQEKETSVFCYATMDTVESRI 1604

Query: 181  L 181
            L
Sbjct: 1605 L 1605


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 17/136 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    +++ +    D K+  +  +IE  N   +++         +L     +      
Sbjct: 231 NAAAVEIDQRVYAVDSDRKLALVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQ 290

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                         +Q + +G++ +L A       G+++    N ++ + L +  E++  
Sbjct: 291 AFHGDLSQGAREKVLQGFKDGEVRVLVA-TDVAARGIDIID-LNYVINYELPYKAEDY-- 346

Query: 147 MIERIGVTRQRQAGFK 162
            + RIG  R  +AG K
Sbjct: 347 -VHRIG--RTGRAGNK 359


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +D K+  L+ +IE+      I+  +       +       +             K    +
Sbjct: 240 NDHKMALLQTLIEEEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E+ +G++ +L A       GL++    + +  F L  + E++   + RIG  R  +AG 
Sbjct: 300 EEFTKGEVDILVA-TDVAARGLHIPQVTH-VFNFDLPNEAEDY---VHRIG--RTGRAGE 352

Query: 162 K 162
            
Sbjct: 353 S 353


>gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638]
 gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|332159793|ref|YP_004296370.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664023|gb|ADZ40667.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 423

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 193 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 252

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 253 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 311

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 312 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 351


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 48  WKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQ----------G 91
           W E HD K   L  +++ +N       +  +V          L++   Q           
Sbjct: 454 WVEEHD-KRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGD 512

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT  +    ++ +  GK P+L A  A    GL++ +  + ++ F L  D+EE+   + RI
Sbjct: 513 RTQREREEALRRFRAGKAPILVA-TAVAARGLDIPHVKH-VINFDLPGDVEEY---VHRI 567

Query: 152 GVTRQRQAG 160
           G  R  + G
Sbjct: 568 G--RTGRMG 574


>gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
 gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
          Length = 436

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           +D K+  L+ ++E+      I+  +      ++                     K    +
Sbjct: 240 NDHKMALLQTLVEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)

Query: 53  DEKIKALEVIIEKANAAP-----IIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
           DEK   LE+I+ + +  P     +++         R+ K   Q           ++  + 
Sbjct: 230 DEKQTLLEMILSERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQR 289

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
              + E+   K P+L A       G+++  G + ++ + L    E++   + RIG T R 
Sbjct: 290 ERALDEFKRAKTPILVA-TDVAARGIDI-PGVSHVLNYELPNVPEQY---VHRIGRTARA 344

Query: 157 RQAG 160
            + G
Sbjct: 345 GRDG 348


>gi|330996879|ref|ZP_08320747.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329572181|gb|EGG53843.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 899

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 543 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 602

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 603 VRAGNEIAKHFAGNNVDVIIY 623


>gi|318607668|emb|CBY29166.1| ATP-dependent RNA helicase RhlB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 428

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|315633347|ref|ZP_07888638.1| RNA polymerase-associated protein RapA [Aggregatibacter segnis ATCC
           33393]
 gi|315477847|gb|EFU68588.1| RNA polymerase-associated protein RapA [Aggregatibacter segnis ATCC
           33393]
          Length = 952

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 19/112 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE I+ +       V +   S + R           D+      +   G    +     
Sbjct: 502 QLEQILREKEGIRSAVFHEKMSIVER-----------DRAAAYFTQQENGAQ--VLLSSG 548

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
               G N Q+  + LV F+L  + +  +Q I R+      + G  R + +Y 
Sbjct: 549 IGSEGRNFQFACH-LVLFNLPENPDLLEQCIGRLD-----RIGQTREIQIYQ 594


>gi|238750653|ref|ZP_04612152.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
 gi|238711043|gb|EEQ03262.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
          Length = 428

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|238789356|ref|ZP_04633142.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
 gi|238722499|gb|EEQ14153.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|238784757|ref|ZP_04628760.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
 gi|238714353|gb|EEQ06362.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|322489205|emb|CBZ24460.1| putative SNF2/RAD54 related DNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 958

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R+    P    + +    +  ++ G   +      +C  G++L       VF  L  D  
Sbjct: 491 RIDGRVP----VQQRGDLLHTFHRGDARIAVIGITACAVGISL-APAQCAVFCELPPDAA 545

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
             +Q  +R+      + G +  V VYYL+
Sbjct: 546 WMRQAEDRL-----HRPGQRDEVVVYYLL 569


>gi|114048943|ref|YP_739493.1| ATP-dependent helicase HepA [Shewanella sp. MR-7]
 gi|123030280|sp|Q0HR19|RAPA_SHESR RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|113890385|gb|ABI44436.1| SNF2-related protein [Shewanella sp. MR-7]
          Length = 968

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQE--- 103
            D ++  L   ++   +  +++          L++A       Q     +    I+    
Sbjct: 488 FDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKA 547

Query: 104 -----WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  EG    L         G N Q+  + LV F L  + +  +Q I R+      +
Sbjct: 548 GAYFAQEEGGAQALICS-EIGSEGRNFQFASH-LVLFDLPLNPDLLEQRIGRLD-----R 600

Query: 159 AGFKRAVFVYYLIAQNTIDELVL 181
            G +  + ++    Q+T  E +L
Sbjct: 601 IGQQNDIQIHLPYLQDTAQERLL 623


>gi|237707887|ref|ZP_04538368.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|229458098|gb|EEO63819.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
          Length = 548

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 119 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 178

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 179 VRAGNEIAKHFAGNNVDVIIY 199


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score = 39.9 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
            +  V   ++K      + K   L  I+  A+    +V         R+ +   +     
Sbjct: 214 VSSTVDKIDQKVLFVDREHKRTLLTDILGGADVVRALVFTRTKHGANRVVELLEKAGIDA 273

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++       + ++ +GKI  L A       G+++  G   ++ F L  + E + 
Sbjct: 274 DAIHGNKSQGARQKALSDFRDGKIKALVA-TDIAARGIDV-DGITHVINFELPNEPESY- 330

Query: 146 QMIERIGVTRQRQAG 160
             + RIG  R  +AG
Sbjct: 331 --VHRIG--RTARAG 341


>gi|330447859|ref|ZP_08311507.1| ATP-dependent DNA helicase, RecQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492050|dbj|GAA06004.1| ATP-dependent DNA helicase, RecQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 638

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            DEK+  L+  +      P IV          +           +A+  G   ++     
Sbjct: 211 DDEKLDVLQHQLTAQPNVPSIVYVTLQHTAEEIADTLTRNHIPAQAYHAGMDAERRQNIQ 270

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q++  G I  + A  A  G G++       ++ F L   +E + Q I R       + G 
Sbjct: 271 QQFMAGSINCIVATIA-FGMGIDKSD-IRQVIHFDLPKSIENYSQEIGR-----AGRDGK 323

Query: 162 KRAVFV 167
           +    V
Sbjct: 324 ESTCTV 329


>gi|294634981|ref|ZP_06713498.1| RNA polymerase-associated protein RapA [Edwardsiella tarda ATCC
           23685]
 gi|291091580|gb|EFE24141.1| RNA polymerase-associated protein RapA [Edwardsiella tarda ATCC
           23685]
          Length = 968

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE ++ +       V +   S + R           D+         EG   LL +   S
Sbjct: 519 LEQLLREREGIRAAVFHEGMSLIER-----------DRAAAYFASQEEGAQVLLCSEIGS 567

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G   N Q+  N LV F L ++ +  +Q I R+      + G  R + +Y    +NT
Sbjct: 568 EGR--NFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQARDIQIYVPCLENT 616


>gi|282877653|ref|ZP_06286468.1| conserved domain protein [Prevotella buccalis ATCC 35310]
 gi|281300225|gb|EFA92579.1| conserved domain protein [Prevotella buccalis ATCC 35310]
          Length = 513

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 84  KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 143

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 144 VRAGNEIAKHFAGNNVDVIIY 164


>gi|282897538|ref|ZP_06305539.1| hypothetical protein CRD_00704 [Raphidiopsis brookii D9]
 gi|281197633|gb|EFA72528.1| hypothetical protein CRD_00704 [Raphidiopsis brookii D9]
          Length = 594

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA--QNTIDEL 179
           G+NLQ   +  + + L W+    +Q   RI      + G    +    L+    N +D  
Sbjct: 198 GINLQTHFSAAIHYDLPWNPNRLEQREGRID-----RYGQTAPIVKSCLLYGRDNPVDGA 252

Query: 180 VLQRLRTKS 188
           VL  L  K+
Sbjct: 253 VLDVLIRKA 261


>gi|302552290|ref|ZP_07304632.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469908|gb|EFL33001.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 547

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 14/152 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQ 90
           LA      +E+  +    D K K  E I+ +     I+V   +   L  L +       +
Sbjct: 375 LAYATAETEEKYRFCATTDTKRKVTEAIVRRFAGQQILVIGQYIDQLDELGEHLGAPVIK 434

Query: 91  GRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T + +       + EG+I +L          ++L      +     +   +E  Q + 
Sbjct: 435 GETSNAQREKLFDAFREGEISVLVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLG 493

Query: 150 RIGVTRQ--RQAGFKRAVFVYYLIAQNTIDEL 179
           R+   +    QA        Y ++A++TID+ 
Sbjct: 494 RVLRPKSDGHQA------HFYSVVARDTIDQD 519


>gi|238765157|ref|ZP_04626090.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
 gi|238696647|gb|EEP89431.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
          Length = 428

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|260904266|ref|ZP_05912588.1| type III restriction protein res subunit [Brevibacterium linens
           BL2]
          Length = 544

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-----IQEWN 105
             D K+  +  ++     A I+V   +   L  + +         + P +      +++ 
Sbjct: 395 TSDAKLPIVRELVADHPKAQILVIGQYLDQLEEVGRELDAPVLTGQTPESQRQELFRDFR 454

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G IP+L          ++L      +     +   +E  Q + RI   ++       + 
Sbjct: 455 SGAIPVLVVS-KVANFSVDLPAASVAIQVSGAFGSRQEEAQRLGRILRPKE----DSGSA 509

Query: 166 FVYYLIAQNTIDELVLQRLRT 186
             Y ++A +T+DE    + R 
Sbjct: 510 TFYTVVAADTVDEHFAAQRRR 530


>gi|325577154|ref|ZP_08147638.1| RNA polymerase-associated protein RapA [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160736|gb|EGC72857.1| RNA polymerase-associated protein RapA [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 920

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVA----------YHFNSDLARLQKA--FPQGRTLDKDPCT 100
           DEKI  L   ++      I+V                +   ++ A    +   +++D   
Sbjct: 443 DEKIHWLIDFLKSHRNEKILVICKTAQTAIQLEQILREKEAIRSAVFHERMSIIERDRAA 502

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               +      +    +    G N Q+  + LV F L  + +  +Q I R+      + G
Sbjct: 503 AYFADTDNGAQVLLSSSIGSEGRNFQFACH-LVLFDLPENPDLLEQCIGRLD-----RIG 556

Query: 161 FKRAVFVY 168
             R V +Y
Sbjct: 557 QMRDVQIY 564


>gi|266625815|ref|ZP_06118750.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
 gi|288862282|gb|EFC94580.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
          Length = 490

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARL 84
           +     L    GAV   E++    V+D+  + L      A   P   I   H  +   R 
Sbjct: 362 TLDNPLLHALEGAVPLPEQEPVFTVYDDIRQKLI-----AQGMPADQIAFIHEANTEVRK 416

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           ++ F + RT             G++ +L    A  G G N+Q     L      W   + 
Sbjct: 417 KELFSKVRT-------------GQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDL 463

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            Q   RI    +RQ      V VY  + + T
Sbjct: 464 AQRKGRI----ERQGNQNPLVHVYRYVTEGT 490


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKD------PCTIQE 103
           EK   L  ++ + +   ++V         R+     KA  +GR +  D         + +
Sbjct: 230 EKKDLLISLLRERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMND 289

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G+  +L A       G+++     +++ + L    E +   + RIG  R  +AG   
Sbjct: 290 FRAGRCRVLIA-TDIAARGIDISELP-LVINYDLPEVAETY---VHRIG--RTGRAGHDG 342

Query: 164 AVFVYY 169
               + 
Sbjct: 343 TAIAFC 348


>gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        +DEK++ L+ ++E+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNDEKMRLLQTLLEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|255522292|ref|ZP_05389529.1| SNF2 family protein [Listeria monocytogenes FSL J1-175]
          Length = 384

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 41/190 (21%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +KQY++ + +       +   A+      ++  Q+               +  EK    E
Sbjct: 230 LKQYYEIKEDYL-----QKAAAYTININFLEMSQVMQHCYC---------LSSEKFTITE 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I        I+   +      LQ+AFP                  KI       A   
Sbjct: 276 SLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KITTF----AKSS 314

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L     +D L+
Sbjct: 315 YGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDLSGNVGLDSLI 368

Query: 181 LQRLRTKSTI 190
              +  K+++
Sbjct: 369 DTNISKKTSL 378


>gi|158264214|gb|ABW24667.1| putative ATP-dependent RNA helicase DDX4 [Rana nigromaculata]
          Length = 398

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  I+++  +   +V          +     Q     
Sbjct: 180 VGGACSDVEQLVIEVEESGKKDKLMEILQQIGSERTMVFVKTKKKADFIATFLCQEKVPS 239

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    ++++  G+ P++ A  A+   GL+++   + ++ F +  D++E+ 
Sbjct: 240 TSIHGDREQREREMALRDFRTGQCPVIVATSAAA-RGLDIEN-VSYVINFDVPDDIDEYV 297

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 298 HRIGRTGRCG 307


>gi|68060631|ref|XP_672302.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56489255|emb|CAI03043.1| DNA helicase, putative [Plasmodium berghei]
          Length = 376

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 55  KIKALEVII----EKANAAPIIVAYHFNS-DLARLQKAFPQ----------GRTLDKDPC 99
           KI   E I     EK N     + Y F       + K   +          G T +    
Sbjct: 188 KIDKKESICDIVREKRNERKTGIIYCFKRKTCDMISKYLRENGIQSLSYHAGLTNNARKQ 247

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             ++W  G I +L A  A  G G++ +   + ++ F+L   +E + Q   R G   
Sbjct: 248 IQEKWINGTIKILVATIA-FGMGIDRKD-VSYIIHFNLPKSIENYYQESGRAGRNG 301


>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 508

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 27/162 (16%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---FPQGRTLD------------KD 97
           K+K LE I           I+   +   +  +  +    P  R +             + 
Sbjct: 341 KLKQLESIFSNYFNEEKKAIIFAQYRDTVDVICNSISNLPGVRPIKFIGQGKGGLSQKEQ 400

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+++  G   +     +    G+++  G +I +F+        + Q   R+G     
Sbjct: 401 VNIIKDFESGVYNV-LVSTSVSEEGMSI-KGVDIAIFYETIPSAIRNIQRRGRVGRFSAG 458

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                    ++ LI + T DE      + +      ++  +K
Sbjct: 459 --------SIFILITRGTNDEGYYWLSKKREKTMKNIIKNIK 492


>gi|237707892|ref|ZP_04538373.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|229458093|gb|EEO63814.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
          Length = 548

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 119 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 178

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 179 VRAGNEIAKHFAGNNVDVIIY 199


>gi|47211476|emb|CAG13358.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 894

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 17/97 (17%)

Query: 53  DEKIKALE-VIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
             K++AL   ++    +      +V   F   L  L+                    K  
Sbjct: 711 SSKVQALMGNLLRLRCEDGRIKCLVISQFTRFLTILETPLREHGFSFVRLDGSSNQKKRT 770

Query: 99  CTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNIL 132
             I+E+         ++     + G GLNL    ++ 
Sbjct: 771 EVIREFQNAAADSPTIMLLSLKAGGVGLNLTAASHVF 807


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDP- 98
           +        D+K   LE +I++     IIV         R+ KA  +      T+  D  
Sbjct: 219 DHAVAYVGMDDKRFFLERLIKENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKD 278

Query: 99  -----CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  +  + +GK  +L A   S   GL++  G + +V + L    E +   I R G 
Sbjct: 279 QKNRFQVLDNFRDGKNQILIATDISA-RGLDV-KGVDFVVNYDLPEVPENYVHRIGRTGR 336

Query: 154 TRQR 157
              R
Sbjct: 337 GTSR 340


>gi|297739574|emb|CBI29756.3| unnamed protein product [Vitis vinifera]
          Length = 1235

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 23/128 (17%)

Query: 82  ARLQKAFPQGRTLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            RLQ+   +           +     ++W++ +I ++ A  A  G G+N +     ++  
Sbjct: 674 ERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVA-FGMGIN-KPDVRFVIHH 731

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY----------YLIAQNTIDELVLQRLR 185
           SL   +E + Q   R       + G + +  +Y          ++I Q  +++  L   +
Sbjct: 732 SLPKSIEGYHQECGR-----AGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQ 786

Query: 186 TKSTIQDL 193
            +S +   
Sbjct: 787 NRSNMASS 794


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ ++E+    
Sbjct: 198 SATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDREDY---VHRIGRTGRAGASGHS 356


>gi|225448193|ref|XP_002265586.1| PREDICTED: similar to DNA Helicase [Vitis vinifera]
          Length = 1224

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 23/128 (17%)

Query: 82  ARLQKAFPQGRTLD------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            RLQ+   +           +     ++W++ +I ++ A  A  G G+N +     ++  
Sbjct: 663 ERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVA-FGMGIN-KPDVRFVIHH 720

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY----------YLIAQNTIDELVLQRLR 185
           SL   +E + Q   R       + G + +  +Y          ++I Q  +++  L   +
Sbjct: 721 SLPKSIEGYHQECGR-----AGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQ 775

Query: 186 TKSTIQDL 193
            +S +   
Sbjct: 776 NRSNMASS 783


>gi|24461733|gb|AAN62302.1|AF440524_89 conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
          Length = 757

 Score = 39.9 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EKA     +V   +        RL+    Q               +   
Sbjct: 579 KERELIEICHKEKAEGRKTLVYSVYTGTRDTTSRLKLLLEQEGFKVAVLRASVDASRRED 638

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 639 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 692

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K AV V YL    T     L  +  K  +   
Sbjct: 693 GQKLAVRVIYLGYAATSQMTCLALMARKIMVSQS 726


>gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
 gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
          Length = 428

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   ++K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R    G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDREDY---VHRIGRTGRAGANGHS 356


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
            ++ +    D K + L  +IE+     ++V         RL +   Q           ++
Sbjct: 223 AQRVFAVDQDRKRELLSHLIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKS 282

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  + E+ EGK+ +L A       G+++    + +V F L    E++   + RIG 
Sbjct: 283 QGARTRALAEFKEGKVQVLVA-TDIAARGIDISELPH-VVNFELPHVPEDY---VHRIGR 337

Query: 154 T-RQRQAGF 161
           T R    G 
Sbjct: 338 TGRAGNNGQ 346


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 24/125 (19%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQGRTLDKD 97
           +  K++AL  ++E      +I+                    D+A L    PQ    ++ 
Sbjct: 266 NSHKLEALNRVLEAVTGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQ----NQR 321

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T++   +G + +L A       GL++   G +++ + + +D E +   + RIG T R 
Sbjct: 322 ERTVERLRKGTVNILVA-TDVAARGLDVDRIG-LVINYDMPFDSEAY---VHRIGRTGRA 376

Query: 157 RQAGF 161
            ++G 
Sbjct: 377 GRSGE 381


>gi|302771451|ref|XP_002969144.1| hypothetical protein SELMODRAFT_90579 [Selaginella moellendorffii]
 gi|300163649|gb|EFJ30260.1| hypothetical protein SELMODRAFT_90579 [Selaginella moellendorffii]
          Length = 769

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 55  KIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
           K+ AL  ++  +   +A  II+   F ++   +                GRTL       
Sbjct: 344 KLHALAQLLNSSPFVDAQSIIIYVKFQNEADLVCNYLQSKGLLTDSYHAGRTLQTRREVQ 403

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNI-LVFFSLWWDLEEHQQMIERIGVTRQ 156
           +++   K+ ++    A+   G+ L       ++ +S+    E + Q I R G   +
Sbjct: 404 EKFCLNKLRVVV---ATVAFGMGLDKSDVRGVIHYSIPSSPEHYVQEIGRAGRDGK 456


>gi|302784292|ref|XP_002973918.1| hypothetical protein SELMODRAFT_100480 [Selaginella moellendorffii]
 gi|300158250|gb|EFJ24873.1| hypothetical protein SELMODRAFT_100480 [Selaginella moellendorffii]
          Length = 769

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 55  KIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
           K+ AL  ++  +   +A  II+   F ++   +                GRTL       
Sbjct: 344 KLHALAQLLNSSPFVDAQSIIIYVKFQNEADLVCNYLQSKGLLTDSYHAGRTLQTRREVQ 403

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNI-LVFFSLWWDLEEHQQMIERIGVTRQ 156
           +++   K+ ++    A+   G+ L       ++ +S+    E + Q I R G   +
Sbjct: 404 EKFCLNKLRVVV---ATVAFGMGLDKSDVRGVIHYSIPSSPEHYVQEIGRAGRDGK 456


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   ++K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R    G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDREDY---VHRIGRTGRAGANGHS 356


>gi|153835571|ref|ZP_01988238.1| RNA polymerase-associated protein RapA [Vibrio harveyi HY01]
 gi|148867846|gb|EDL67075.1| RNA polymerase-associated protein RapA [Vibrio harveyi HY01]
          Length = 969

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----------RLQKAFPQGR 92
           E+  W +        LE + EK +   +++A   ++ L            R         
Sbjct: 482 EDSSWWQFDSRVNWLLEKVKEKRSDKVLVIASRASTALQLEQALREREGIRATVFHEGMS 541

Query: 93  TLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            L++D         EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 ILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT 175
                 + G KR + ++    + T
Sbjct: 600 D-----RIGQKRDIDIHVPYLKGT 618


>gi|28899456|ref|NP_799061.1| ATP-dependent helicase HepA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839600|ref|ZP_01992267.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|260363377|ref|ZP_05776229.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus K5030]
 gi|260879311|ref|ZP_05891666.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AN-5034]
 gi|260895730|ref|ZP_05904226.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio parahaemolyticus Peru-466]
 gi|41017713|sp|Q87LD0|RAPA_VIBPA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|28807692|dbj|BAC60945.1| RNA polymerase-associated protein HepA [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746871|gb|EDM57859.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|308087403|gb|EFO37098.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio parahaemolyticus Peru-466]
 gi|308093093|gb|EFO42788.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AN-5034]
 gi|308111158|gb|EFO48698.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus K5030]
          Length = 969

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRGEKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 576 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|302306298|ref|NP_982512.2| AAL030Cp [Ashbya gossypii ATCC 10895]
 gi|299788451|gb|AAS50336.2| AAL030Cp [Ashbya gossypii ATCC 10895]
          Length = 1539

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 71   IIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN--------EGKIPLLFAHPASCGH 121
            I++   +   L  +     Q           ++ +         + +I  L         
Sbjct: 1360 IVIYSQYAELLEIVAHVLKQNSIKFLTTTKNVRNFAKVVETFKADPEITCLLLDTKRQAS 1419

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL L    ++ +   +  +  E Q +       R  + G     +V++ +  NT++  +L
Sbjct: 1420 GLTLINATHVFLLEPIVNNSTEFQAIN------RIHRIGQTSETYVWHFMLLNTVEHSIL 1473

Query: 182  Q 182
            +
Sbjct: 1474 R 1474


>gi|260900303|ref|ZP_05908698.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107586|gb|EFO45126.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus AQ4037]
 gi|328471408|gb|EGF42303.1| ATP-dependent helicase HepA [Vibrio parahaemolyticus 10329]
          Length = 969

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRGEKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 576 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
           Methanococcus jannaschii
          Length = 784

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 28/160 (17%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------------DKDP 98
           +  ++ I+EK     II+   +   + ++     Q                      +  
Sbjct: 346 VDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEGKGMSQKEQI 405

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ +   K   +    +    G+++    N ++F+          Q        R+ +
Sbjct: 406 EAIERF--KKEGSVLVSTSVSEEGIDI-PSVNYIIFYEPVPSEIRFIQ--------RRGR 454

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           A       VY LIA+ T DE   +    K      LL  +
Sbjct: 455 AMRGEGGKVYVLIAKGTADEAYYRSALYKEREMKRLLKNM 494


>gi|303237812|ref|ZP_07324370.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302482037|gb|EFL45074.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 2068

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 55/180 (30%), Gaps = 26/180 (14%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
            T K  Q     +   +   W    + K K +E              YH  S   R  +  
Sbjct: 1611 TQKGTQFVFSDLGTYKPGEWNVYSEIKRKLVED-------------YHIPSYEIRFIQEC 1657

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +        +   N G I ++F   +  G G+N Q     +      W   + +Q  
Sbjct: 1658 KNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAVHHLDTPWRPSDLEQRN 1714

Query: 149  ERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R         +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 1715 GRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 1768


>gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661]
 gi|3915469|sp|Q58900|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505
 gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 778

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 28/160 (17%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------------DKDP 98
           +  ++ I+EK     II+   +   + ++     Q                      +  
Sbjct: 340 VDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEGKGMSQKEQI 399

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ +   K   +    +    G+++    N ++F+          Q        R+ +
Sbjct: 400 EAIERF--KKEGSVLVSTSVSEEGIDI-PSVNYIIFYEPVPSEIRFIQ--------RRGR 448

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           A       VY LIA+ T DE   +    K      LL  +
Sbjct: 449 AMRGEGGKVYVLIAKGTADEAYYRSALYKEREMKRLLKNM 488


>gi|315127723|ref|YP_004069726.1| ATP-dependent helicase HepA [Pseudoalteromonas sp. SM9913]
 gi|315016237|gb|ADT69575.1| ATP-dependent helicase HepA [Pseudoalteromonas sp. SM9913]
          Length = 964

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT 100
           D    W     + +K  +V++  A A   I       +   ++ +        +++D   
Sbjct: 484 DPRVDWLIETLKTLKREKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERDRAA 543

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               +E     +         G N Q+  + LV F L  + +  +Q I R+      + G
Sbjct: 544 AFFADEYDNAQILLCSEIGSEGRNFQFS-HHLVLFDLPLNPDLLEQRIGRLD-----RIG 597

Query: 161 FKRAVFVYYLIAQNTIDELVLQ 182
             + V ++    +NT  E++L+
Sbjct: 598 QTQDVNIHVPYFENTAQEVLLR 619


>gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
 gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
          Length = 433

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           ++ K+  L+ +IE+      I+  +       +                     K    +
Sbjct: 240 NEHKMALLQTLIEEEWPERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + LL A       GL++    + +  F L  D E++   + RIG T R   +G
Sbjct: 300 EQFTKGDVDLLVA-TDVAARGLHIPQVTH-VFNFDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|121608160|ref|YP_995967.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121552800|gb|ABM56949.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 1031

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G++LQ   N+L+   + ++    +Q   RI    QR    ++ V +++ +      
Sbjct: 585 AASEGIDLQNHCNLLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWHPV-DGGHG 639

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +L+ LR         L++++ + 
Sbjct: 640 EDILRALRK--------LDSMRADM 656


>gi|38637975|ref|NP_942949.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527313|gb|AAP86063.1| putative helicase superfamily II [Ralstonia eutropha H16]
          Length = 1037

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R  DKD    + +  G    L    AS   G NL    + ++F+   W      Q + R 
Sbjct: 899 RVADKD----KRFVGGTATGLLCTKASGRAGYNLPN-ADYVLFYDRSWTWRIEYQAMRR- 952

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G  + V  ++L    ++D    Q +  K    +  L+
Sbjct: 953 -ALRWNRKGQLK-VVYFHL--PGSLDIYQDQMVAHKRDAMEAGLD 993


>gi|87122371|ref|ZP_01078252.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
 gi|86162346|gb|EAQ63630.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
          Length = 432

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---------- 93
           E+  +    D+K   LE +I++ +    IV  +   +   L +                 
Sbjct: 277 EQVIYSVEADQKWPVLESLIKEKDNQRTIVFANRRDETRDLYERLKDAGVNCAMLSGEVA 336

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            DK   T+  +  GKI +L A     G G+++  G  ++V +SL  D E++
Sbjct: 337 QDKRVKTLANFKNGKIQVLVA-TDVAGRGIHV-DGIELVVNYSLPEDPEDY 385


>gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
            ++K+  L  ++E+      IV  +      ++                    +K    +
Sbjct: 237 DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKIL 296

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++  GK+ +L A       GL++    + +  + L  D E++   + RIG  R  +AG 
Sbjct: 297 EDFTSGKLDILVA-TDVAARGLHIPMVSH-VFNYDLPDDAEDY---VHRIG--RTGRAGQ 349

Query: 162 K 162
            
Sbjct: 350 S 350


>gi|313897952|ref|ZP_07831492.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312957224|gb|EFR38852.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 1747

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 17/135 (12%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-------------EGKIPLLFAHPASCGHG 122
            +F +    ++    +G  ++ +   I ++N             +G I +LF   A  G G
Sbjct: 1364 NFQNVYVDMKNKLIKGGIIESEIAFIHDFNTEVAKDRLFKDMNDGNIRVLFGSTAKLGAG 1423

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             N+Q     +    + W   + +Q   R      RQ    + ++ +  + + + D    Q
Sbjct: 1424 TNVQKRIIAIHHVDVPWRASDIEQQNGRAF----RQGNMYKEIYEFRYVTRKSFDAYSWQ 1479

Query: 183  RLRTKSTIQDLLLNA 197
             + TKS+    LL  
Sbjct: 1480 MVETKSSYMTQLLEG 1494


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   ++K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R    G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDREDY---VHRIGRTGRAGANGHS 356


>gi|119470571|ref|ZP_01613274.1| ATP-dependent helicase HepA [Alteromonadales bacterium TW-7]
 gi|119446272|gb|EAW27549.1| ATP-dependent helicase HepA [Alteromonadales bacterium TW-7]
          Length = 964

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 19/124 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           LE I+ +  A    V +   S + R           D+      +       +L      
Sbjct: 515 LEQILREREAIKASVFHEGMSIIER-----------DRAAAFFAD-EYDNAQILLCS-EI 561

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G N Q+  + LV F L  + +  +Q I R+      + G  + V ++    +NT  E
Sbjct: 562 GSEGRNFQFS-HHLVLFDLPLNPDLLEQRIGRLD-----RIGQTQDVNIHVPYFENTAQE 615

Query: 179 LVLQ 182
           ++L+
Sbjct: 616 VLLR 619


>gi|121593951|ref|YP_985847.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606031|gb|ABM41771.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 1642

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T  +     +   EG++ +L       G G N+Q     L      W   + +Q   
Sbjct: 1284 DAETDAQKATLFKAVREGRVRVLLGSTGKMGVGTNVQTRLVALHHLDAPWRPCDVEQREG 1343

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            RI     RQ      V ++  + + + D    Q L TK+     +++  K
Sbjct: 1344 RIL----RQGNECEEVEIFRYVTEQSFDAYSWQTLETKARFIAQVMSGDK 1389


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 24/132 (18%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQ 90
           ++     +  KI+AL  ++E      +I+                    D+A L    PQ
Sbjct: 273 QRSITMQNSHKIEALNRVLEAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQ 332

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++   T+    +G + +L A       GL++   G +++ + + +D E +   + R
Sbjct: 333 ----NQRERTVDRLRKGTVNILVA-TDVAARGLDVDRIG-LVINYDMPFDSEAY---VHR 383

Query: 151 IGVT-RQRQAGF 161
           IG T R  + G 
Sbjct: 384 IGRTGRAGRTGE 395


>gi|307106391|gb|EFN54637.1| hypothetical protein CHLNCDRAFT_9749 [Chlorella variabilis]
          Length = 370

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDP 98
                    K+  L+ +++K       +++   FN  L  L+     + +   R      
Sbjct: 272 GEDIVHASGKMDVLDRLLKKLKRRGHRVVLFSQFNMQLDILEDFMNMRGYKYSRLDGTTN 331

Query: 99  C-----TIQEWNEG--KIPLLFAHPASCGHGLNLQYG 128
                  I+ +N       +   +  + G G+NLQ  
Sbjct: 332 RVQRMIDIKLFNRPGSDTFVYLLNTRAGGLGVNLQTA 368


>gi|298383505|ref|ZP_06993066.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263109|gb|EFI05972.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 816

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 387 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 446

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 447 VRAGNEIAKHFAGNNVDVIIY 467


>gi|291570834|dbj|BAI93106.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 493

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----CT 100
           K      D K++ L  I+ + +    I+    N+ + R+ + F       + P       
Sbjct: 314 KEIALCTDGKLRILGDILSQNHPERTIIFTVDNTTVYRISQDFLIPAITHQTPVKERHQI 373

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + ++ +G    L A       G+++     I +  S      E+ Q   R+G   ++ + 
Sbjct: 374 LDKFRQGDYRTLVAS-HVLNEGVDVPD-AKIAIILSGTGSEREYIQ---RLGRVLRKGSQ 428

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             +   +Y +I +NT +E   QR R     Q
Sbjct: 429 TGKRAVLYEVITENTSEEQTSQRRRGHQKPQ 459


>gi|269961316|ref|ZP_06175682.1| RNA polymerase-associated protein rapA [Vibrio harveyi 1DA3]
 gi|269833982|gb|EEZ88075.1| RNA polymerase-associated protein rapA [Vibrio harveyi 1DA3]
          Length = 969

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----------RLQKAFPQGR 92
           E+  W +        LE + EK +   +++A   ++ L            R         
Sbjct: 482 EDSSWWQFDSRVNWLLEKVKEKRSDKVLVIASRASTALQLEQALREREGIRATVFHEGMS 541

Query: 93  TLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            L++D         EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 ILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT 175
                 + G KR + ++    + T
Sbjct: 600 D-----RIGQKRDIDIHVPYLKGT 618


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 43  DEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYH-------FNSDLARLQKAFPQGRTL 94
           D  +H   V D +K + LE I++K     +++           +  L RL          
Sbjct: 293 DVTQHVSVVEDYDKQRRLEEILQKVGKQRVLIFVKTKRTADSLHHSLQRLIGGSVMAIHG 352

Query: 95  DKDPC----TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           DK+       +  +   +  +L A       GL+++   ++++ F +  ++E++   + R
Sbjct: 353 DKEQSQRDYVLDRFRRDERSVLVA-TDVAARGLDIKN-LDVVINFDMPTNIEDY---VHR 407

Query: 151 IGVTRQRQAGFK 162
           IG  R  +AG +
Sbjct: 408 IG--RTGRAGQR 417


>gi|330859827|emb|CBX70159.1| ATP-dependent RNA helicase rhlB [Yersinia enterocolitica W22703]
          Length = 382

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 152 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 211

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 212 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 270

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 271 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 310


>gi|237717838|ref|ZP_04548319.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452778|gb|EEO58569.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 873

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 444 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 503

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 504 VRAGNEIAKHFAGNNVDVIIY 524


>gi|237726536|ref|ZP_04557017.1| helicase domain-containing protein [Bacteroides sp. D4]
 gi|229435062|gb|EEO45139.1| helicase domain-containing protein [Bacteroides dorei 5_1_36/D4]
          Length = 864

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 435 KTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 494

Query: 152 GVTR----QRQAGFKRAVFVY 168
                   +  AG    V +Y
Sbjct: 495 VRAGNEIAKHFAGNNVDVIIY 515


>gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933]
 gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1044]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R    G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGANGHS 356


>gi|19387223|gb|AAL87142.1|AF479823_1 DEAD box RNA helicase Vasa [Pantodon buchholzi]
          Length = 394

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K + L  I+        +V          +     Q     
Sbjct: 180 VGGACNDVEQHVVEVSQYSKREQLVEILRTTGNERTMVFVETKRKADFIATFLCQEQIST 239

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  GK P+L A  +    GL++++  + +V F L   ++E+ 
Sbjct: 240 TSIHGDREQREREQALGDFRSGKCPVLVA-TSVAARGLDIEHVQH-VVNFDLPSTIDEYV 297

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 298 HRIGRTGRCG 307


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 16/137 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-- 93
           AN  V   E+        +K  AL  +I++     ++V         R+ +   + +   
Sbjct: 211 ANTTVDAVEQHLVTIDKSKKTTALICLIKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPS 270

Query: 94  --------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                          + ++  G I +L A       G+++     I+V   L     ++ 
Sbjct: 271 AAIHGNKSQGARTKALADFKNGDIKVLVA-TDIAARGIDISELP-IVVNLDLPNTAADY- 327

Query: 146 QMIERIGVT-RQRQAGF 161
             + RIG T R   +G 
Sbjct: 328 --VHRIGRTGRAGASGQ 342


>gi|170290226|ref|YP_001737042.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174306|gb|ACB07359.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 444

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 27/187 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-------AVYYDEEKHWKEVHD 53
           +++Y +  R+L   + G            +K +++++         + +   +       
Sbjct: 258 LREYREALRDLKLRITGMED--------FMKLIRMSSSNPTARKALLAWHRMRKIALNSR 309

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----RTLDKDPCTI-QEWNEGK 108
            K+  L+ ++E      +I+   FN     + + F       RT  K+   +   +  G 
Sbjct: 310 SKLDTLQSLLESHKDDKVIIFTEFNEMAEEISRRFLIPLITHRTDKKERKEVLDAFRVGS 369

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +  +         GL++     + +         E  Q + RI   R+     KRAV +Y
Sbjct: 370 VTKIVTS-KVLDEGLDVPD-ARVGIILGGTGSRREFVQRLGRILRKREG----KRAV-LY 422

Query: 169 YLIAQNT 175
            +I++ T
Sbjct: 423 EVISRGT 429


>gi|170110062|ref|XP_001886237.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164638821|gb|EDR03096.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 210

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-----LVFFSLWWDLEEHQQMIE 149
                  +   + +I +L  H      GLN+     +     +V  S         Q I 
Sbjct: 15  KGQSAAKKFKTDPEILVLLLHGERENAGLNVTCASRVFLLESVVHHS------FEIQAIA 68

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           RI      + G  RA  VY   A++T++  +L  
Sbjct: 69  RID-----RMGQTRATEVYCYYAEDTVERNILDL 97


>gi|123440563|ref|YP_001004557.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087524|emb|CAL10305.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 358

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYDEE-----KHWKE------VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y + E      H  +       ++EK++ L+ +IE+    
Sbjct: 128 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPD 187

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 188 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 246

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 247 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 286


>gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401]
 gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|290893576|ref|ZP_06556559.1| SNF2 family domain-containing protein [Listeria monocytogenes FSL
           J2-071]
 gi|290556921|gb|EFD90452.1| SNF2 family domain-containing protein [Listeria monocytogenes FSL
           J2-071]
          Length = 394

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 31/153 (20%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E ++ +      I+   +      LQKAFP                  KI 
Sbjct: 268 LSSEKFTITESLVAEKEET-TIIFCKYKRSEEALQKAFPNV----------------KIT 310

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 311 TF----AKSSYGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 360

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                +D L+   +  K+     LL   KKE +
Sbjct: 361 SGNVGLDSLIDINIFKKTN----LLQEFKKEAL 389


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 39/182 (21%)

Query: 47  HWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAF-------------- 88
            WKE    K+  L      I++++    IIV   +   +  +                  
Sbjct: 344 EWKEECHPKLLILPELVQSILDESPDTRIIVFATYRDTVKMVVDTLQAAGISAERFVGKA 403

Query: 89  ----PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                +G +  +   TI  + EG+  +L A  +    GL++    ++++F+         
Sbjct: 404 NKDQEKGLSQKRQIATISRFREGEFSVLVA-TSVGEEGLDI-PSTDVVIFYEPVPSEIRS 461

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE--LVLQRLRTKSTIQDLLLNALKKET 202
            Q        R+ + G      +  L+ + T DE   ++ R R K      ++  +K  T
Sbjct: 462 IQ--------RKGRTGRHNTGRIIVLVTRKTTDETFQIVSRRREK-----AMVTGMKNLT 508

Query: 203 IH 204
            H
Sbjct: 509 GH 510


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDP- 98
           E        D+K +AL  ++ +++    I+  +   D+  L K+  +       L  D  
Sbjct: 265 ETGLVIVEEDDKRRALRKLLRESDMQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLP 324

Query: 99  -----CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 T++ +  G++ +L     +   G+++  G + +  F L +  E++   + RIG 
Sbjct: 325 QSLRFSTLEAFKSGELKILVCSDIAA-RGIDI-GGLSHVFNFDLPFHAEDY---VHRIGR 379

Query: 154 T-RQRQAGF 161
           T R  + G 
Sbjct: 380 TGRAGRTGH 388


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 24/171 (14%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E++ +    D K+  +  +IE      +++         +L     +      
Sbjct: 240 NAAAVEIEQRVYAVDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQ 299

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                         +Q + +G++ +L A       G+++    N +V + L +  E++  
Sbjct: 300 AFHGDLSQGAREKVLQSFKDGEVRVLVA-TDVAARGIDIID-LNYVVNYELPYKAEDY-- 355

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR---TKSTIQDLL 194
            + RIG  R  +AG K       L+ +   DE +L+ +     K   Q  L
Sbjct: 356 -VHRIG--RTGRAGNKGVAIT--LLCRE--DEHLLEEVEVVLDKRLPQQWL 399


>gi|147815238|emb|CAN72249.1| hypothetical protein VITISV_007214 [Vitis vinifera]
          Length = 689

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 52  HDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDP 98
              KI+AL      ++E   +A  +V   F S L  +  +  +         G    ++ 
Sbjct: 606 TSTKIEALREEIRFMVETDGSAKALVFSQFVSFLDLIDYSLQKSQINCVKLVGDVAARNA 665

Query: 99  CTIQEWNEGKIPLLFAHPASCGH 121
              + +N+    +L     + G 
Sbjct: 666 LVSRFFNDSDCRILLTTSEAGGL 688


>gi|258648838|ref|ZP_05736307.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260850951|gb|EEX70820.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2321

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
               ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 1645 KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 1701

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 1702 RAVAIHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNL 1759

Query: 184  LRTKSTIQDLLLNALKKETIH 204
            L  K     L +N LK  T+ 
Sbjct: 1760 LHNKQ----LFINQLKTNTLG 1776


>gi|256810024|ref|YP_003127393.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
 gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
          Length = 767

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 25/176 (14%)

Query: 39  AVYYDEEKHWKEVHDEKI-KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           AV    E + +    EK+   ++ I+EK     IIV   +   + ++     Q       
Sbjct: 322 AVNLLMESNVEHPKLEKVVDMVKNILEKNKDERIIVFAQYRDTVEKIVNLLHQNGIKAIR 381

Query: 91  --GRTLDKDPCTIQEWNEGKIPLL------FAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             G+   +     Q+     I             +    G+++    N ++F+       
Sbjct: 382 FIGQANKEGKGMSQKQQIEAIEKFKREGSVLVSTSVSEEGIDI-PTVNYIIFYEPVPSEI 440

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              Q   R       +A        Y LIA+ T DE   +    K      LL  +
Sbjct: 441 RFIQRRGRAMRGEGGKA--------YILIAKGTTDEAYYRSALYKEREMKRLLKNM 488


>gi|162418242|ref|YP_001605106.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165926343|ref|ZP_02222175.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939710|ref|ZP_02228253.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009474|ref|ZP_02230372.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213643|ref|ZP_02239678.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402073|ref|ZP_02307552.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420915|ref|ZP_02312668.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425993|ref|ZP_02317746.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|270488784|ref|ZP_06205858.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294505532|ref|YP_003569594.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
 gi|162351057|gb|ABX85005.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165912400|gb|EDR31034.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921867|gb|EDR39064.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991396|gb|EDR43697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205316|gb|EDR49796.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961044|gb|EDR57065.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048547|gb|EDR59955.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055141|gb|EDR64940.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262363598|gb|ACY60319.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D106004]
 gi|262367526|gb|ACY64083.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D182038]
 gi|270337288|gb|EFA48065.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294355991|gb|ADE66332.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
          Length = 423

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD------EEKHWKE-----VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +           KE      ++EK++ L+ +IE+    
Sbjct: 193 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 252

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 253 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 311

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 312 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 351


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            ++K+  L  ++E+      IV  +      ++                    +K    +
Sbjct: 237 DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKIL 296

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++  GK+ +L A       GL++    + +  + L  D E++   + RIG  R  +AG 
Sbjct: 297 EDFTSGKLDILVA-TDVAARGLHIPMVSH-VFNYDLPDDAEDY---VHRIG--RTGRAGQ 349

Query: 162 K 162
            
Sbjct: 350 S 350


>gi|194336504|ref|YP_002018298.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308981|gb|ACF43681.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 958

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ     ++ + L W+    +Q   R+      + G         L+  A N ID +
Sbjct: 549 GINLQQQFTAVLHYDLPWNPNRLEQREGRVD-----RFGQPAPEVKTCLLYGADNPIDGI 603

Query: 180 VLQRLRTK 187
           VL  L  K
Sbjct: 604 VLDVLLRK 611


>gi|119944341|ref|YP_942021.1| ATP-dependent helicase HepA [Psychromonas ingrahamii 37]
 gi|119862945|gb|ABM02422.1| RNA polymerase-associated protein HepA [Psychromonas ingrahamii 37]
          Length = 970

 Score = 39.5 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------------TLDKD 97
            D +I  L  +I++     I++          L++A                     DK 
Sbjct: 488 FDPRINWLIDLIQQLKGEKILIIAAQAETALALEEALRTREAIKSAVFHEGLSLIERDKA 547

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                +  EG   ++ +   S G   N Q+  + LV F L  + +  +Q I R+      
Sbjct: 548 AAYFAQTEEGAQVMICSEIGSEGR--NFQF-AHHLVLFDLPINPDLLEQRIGRLD----- 599

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + +Y    + T  E + +
Sbjct: 600 RIGQRCDIQIYTPYLKGTSQENLQK 624


>gi|312884624|ref|ZP_07744327.1| ATP-dependent helicase HepA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367716|gb|EFP95265.1| ATP-dependent helicase HepA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 969

 Score = 39.5 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 19/144 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH----FNSDLARLQKAFPQGRTLDKDPC 99
           +E  W +        +E I EK +   +++A         + A  ++   +     +D  
Sbjct: 482 DESSWWQFDSRVNWLIEKITEKRSEKVLVIASRASTALQLEQALREREGIRATVFHEDMS 541

Query: 100 TIQE--------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            I+           EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 IIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQFS-NQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT 175
                 + G KR + +Y    + T
Sbjct: 600 D-----RIGQKRDIDIYVPYLEGT 618


>gi|300772424|ref|ZP_07082294.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300760727|gb|EFK57553.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 1810

 Score = 39.5 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 27/182 (14%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            A N A    K   Q     ++ D        W    + K K +E      +  P      
Sbjct: 1353 ADNIAKYYNKFNAQKGTQFIFSDLGTYKPNQWNIYSEIKRKLVED-----HDIPA----- 1402

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               ++  +Q+     +   +    I+  NEGKI +LF   +  G G+N Q     +    
Sbjct: 1403 --HEIRFIQE----AKNDKQRKELIKGMNEGKIRVLFGSTSMLGTGVNAQKRAVAVHHLD 1456

Query: 137  LWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              W   +  Q   R         +     K  V +Y    + ++D      L  K    D
Sbjct: 1457 TPWRPSDLAQRDGRAIRKGNEIAKHFNDNKVDVIIY--AVEKSLDSYKFNLLHNKQLFID 1514

Query: 193  LL 194
             L
Sbjct: 1515 QL 1516


>gi|254442024|ref|ZP_05055500.1| Helicase conserved C-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256332|gb|EDY80640.1| Helicase conserved C-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 959

 Score = 39.5 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTI 101
           +D K++A  ++I     N    +V   +              L+KAF             
Sbjct: 463 NDYKLEAAHMVITDWLENGYSPVVFCRYIPTANYVGEQLKPILEKAFKDITVQVVTSEDP 522

Query: 102 QEWNEGKIPLL-------FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            E    +I  +                G+NL    + ++ + L W+    +Q   R+   
Sbjct: 523 DELRRERIEAMGSSKRRVLIATDCLSEGINLHAHFSAVLHYDLPWNPNRLEQREGRVD-- 580

Query: 155 RQRQAGFKRA-VFVYYLIAQ-NTIDELVLQRLRTK 187
              + G  R  V  Y L ++ N +D +VL  +  K
Sbjct: 581 ---RFGQTRDEVKAYLLFSKDNPVDGVVLNVILRK 612


>gi|22124274|ref|NP_667697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis KIM 10]
 gi|51594521|ref|YP_068712.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806147|ref|YP_650063.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Antiqua]
 gi|108810260|ref|YP_646027.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Nepal516]
 gi|145600737|ref|YP_001164813.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Pestoides F]
 gi|153947434|ref|YP_001399175.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|153997075|ref|ZP_02022208.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|170026246|ref|YP_001722751.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis YPIII]
 gi|186893519|ref|YP_001870631.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis PB1/+]
 gi|218930872|ref|YP_002348747.1| ATP-dependent RNA helicase RhlB [Yersinia pestis CO92]
 gi|229837202|ref|ZP_04457367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229839562|ref|ZP_04459721.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900125|ref|ZP_04515262.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900428|ref|ZP_04515557.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|32363372|sp|Q8ZAD8|RHLB_YERPE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56749471|sp|Q66G19|RHLB_YERPS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122979817|sp|Q1CBQ4|RHLB_YERPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123073645|sp|Q1CNK3|RHLB_YERPN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040087|sp|A4TRC8|RHLB_YERPP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040117|sp|A7FD47|RHLB_YERP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739238|sp|B2K046|RHLB_YERPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739239|sp|B1JQ11|RHLB_YERPY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21957043|gb|AAM83948.1|AE013636_6 putative ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|51587803|emb|CAH19405.1| putative DEAD-box helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108773908|gb|ABG16427.1| DEAD-box helicase [Yersinia pestis Nepal516]
 gi|108778060|gb|ABG12118.1| putative DEAD-box helicase [Yersinia pestis Antiqua]
 gi|115349483|emb|CAL22456.1| putative DEAD-box helicase [Yersinia pestis CO92]
 gi|145212433|gb|ABP41840.1| DEAD-box helicase [Yersinia pestis Pestoides F]
 gi|149289381|gb|EDM39459.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|152958929|gb|ABS46390.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|169752780|gb|ACA70298.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696545|gb|ACC87174.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682447|gb|EEO78534.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229686905|gb|EEO78984.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695928|gb|EEO85975.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706145|gb|EEO92154.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320013530|gb|ADV97101.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score = 39.5 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD------EEKHWKE-----VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +           KE      ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 18/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFN---SDLARL--QKAFP-----QGRTLDKDPCTI 101
            DEK   L  +I        +V         +L R+  +   P       R+ ++    +
Sbjct: 392 SDEKQNTLLDLISTVEG-LTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMAL 450

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +  GK P++ A       GL++ +  + ++ + L  D++++   + RIG  R  +AG 
Sbjct: 451 RSFKSGKTPVMVA-TDVAARGLDIPHVTH-VINYDLPKDIDDY---VHRIG--RTGRAGH 503

Query: 162 K 162
           K
Sbjct: 504 K 504


>gi|237801927|ref|ZP_04590388.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024785|gb|EGI04841.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 752

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|226228127|ref|YP_002762233.1| putative helicase [Gemmatimonas aurantiaca T-27]
 gi|226091318|dbj|BAH39763.1| putative helicase [Gemmatimonas aurantiaca T-27]
          Length = 800

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ-RQAGFKRAVFVYYL 170
           L         G+NLQ  G ++V   L W      Q + R        QA     V VY L
Sbjct: 452 LLITTDLLAEGVNLQDAG-VVVHLDLPWTHALLTQRVGRCARLGSPHQA-----VHVYRL 505

Query: 171 I--AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              A  T       R+  K+++    +   + + 
Sbjct: 506 RSSAHATSALRAEARIAQKASLARRHVAGTRAQP 539


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K  + L  +    ++   N+ +K+          +Y  ++K       +K  AL  +I+
Sbjct: 206 RKLAKGLVNNPVEISVTPRNATAKS------VEQYIYMVDQK-------QKTAALIHLIK 252

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114
           + +   ++V         R+ K               ++       +  +  G + +L A
Sbjct: 253 QNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVLVA 312

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  G+++    N +V F L    E++   + RIG T R   +G 
Sbjct: 313 -TDIAARGIDIDQLPN-VVNFDLPNVPEDY---VHRIGRTGRAGASGQ 355


>gi|66044710|ref|YP_234551.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. syringae B728a]
 gi|63255417|gb|AAY36513.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 752

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|68637903|emb|CAI36108.1| superfamily II DNA/RNA helicase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 752

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 574 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 633

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 634 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 687

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 688 GQKQDVRV 695


>gi|119357113|ref|YP_911757.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354462|gb|ABL65333.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 958

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ     ++ + L W+    +Q   R+      + G         L+  A N ID +
Sbjct: 549 GINLQQQFTAVLHYDLPWNPNRLEQREGRVD-----RFGQPAPEVKTCLLYGADNPIDGI 603

Query: 180 VLQRLRTK 187
           VL  L  K
Sbjct: 604 VLDVLLRK 611


>gi|225377655|ref|ZP_03754876.1| hypothetical protein ROSEINA2194_03306 [Roseburia inulinivorans DSM
           16841]
 gi|225210519|gb|EEG92873.1| hypothetical protein ROSEINA2194_03306 [Roseburia inulinivorans DSM
           16841]
          Length = 862

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           D   I+++  +G++        +   G NL+     ++ + L ++  + +Q I+R     
Sbjct: 410 DYSVIRQFKEDGEV---LISTDNGAKGFNLEEAA-FIIHYDLPYNTLKLEQRIDRC---- 461

Query: 156 QRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLL 195
             + G +  V     I +N   D   L+ +  +  + D + 
Sbjct: 462 -HRLGQENDVLSVAFIDKNNFADVRKLELVNKRMLVTDGVF 501


>gi|227537745|ref|ZP_03967794.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242359|gb|EEI92374.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1810

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 27/182 (14%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            A N A    K   Q     ++ D        W    + K K +E      +  P      
Sbjct: 1353 ADNIAKYYNKFNAQKGTQFIFSDLGTYKPNQWNIYSEIKRKLVED-----HDIPA----- 1402

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               ++  +Q+     +   +    I+  NEGKI +LF   +  G G+N Q     +    
Sbjct: 1403 --HEIRFIQE----AKNDKQRKELIKGMNEGKIRVLFGSTSMLGTGVNAQKRAVAVHHLD 1456

Query: 137  LWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              W   +  Q   R         +     K  V +Y    + ++D      L  K    D
Sbjct: 1457 TPWRPSDLAQRDGRAIRKGNEIAKHFNDNKVDVIIY--AVEKSLDSYKFNLLHNKQLFID 1514

Query: 193  LL 194
             L
Sbjct: 1515 QL 1516


>gi|254481238|ref|ZP_05094483.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
 gi|214038401|gb|EEB79063.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
          Length = 920

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--FPQGRTLDKDPCT 100
           D    W E   + ++  +V+I  A+A+  +   H     A ++ A  +     +++D   
Sbjct: 444 DPRVDWLETTLKALRPEKVLIICAHASTAVALEHHLHMRAGIRSAAFYEALSIIERDRAA 503

Query: 101 --IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +   G   L+ +   S G   N Q+  + L+ F L  + +  +Q I R+      +
Sbjct: 504 AYFADETGGAQTLVCSEIGSEGR--NFQF-AHHLILFDLPLNPDLLEQRIGRLD-----R 555

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQ 182
            G    V ++    Q +  E +L 
Sbjct: 556 IGQDHDVEIHVPYLQGSAQETLLD 579


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 47  HWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLD 95
           H  E  + K   L  I+ E+ + + I+V     + + +L +               +   
Sbjct: 293 HIVEDAEAKYAKLMDILEEEMDGSSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQK 352

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT- 154
           +    ++E+   + P++         GL++  G  ++V       +EE+   + RIG T 
Sbjct: 353 ERDWVLEEFRAARSPIM-ISTDVASRGLDV-VGVKLVVNHDFPKSVEEY---VHRIGRTG 407

Query: 155 RQRQAGFKRAVF 166
           R  + G     F
Sbjct: 408 RAGRKGKSHTFF 419


>gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
 gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ +IE+      I+  +      ++                     K    +
Sbjct: 240 NEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|261403123|ref|YP_003247347.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 783

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 29/164 (17%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTL 94
           ++ I+ ++ I+++     II+   +   + ++     Q                  G T 
Sbjct: 337 EKVIEMVKKILKENKDERIIIFAQYRDTVEKIVNLLNQNEIKAIKFIGQASKEKGKGMTQ 396

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I+++   K   +    +    G+++    N ++F+          Q   R    
Sbjct: 397 KEQIKAIEKF--KKEGSVLVSTSVSEEGIDI-PSVNYIIFYEPVPSEIRFIQRRGRAMR- 452

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                G    VF+  LIA+ T DE   +    K      +L  +
Sbjct: 453 -----GEGGNVFI--LIAKGTTDEAYYKSALYKEKGMKQILKNM 489


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 17/135 (12%)

Query: 38  GAVYYDEEKHWKEVH-DEKIKALEVIIEKAN------AAPIIVAYHFNSDLARL---QKA 87
           G    D  +++ EV  ++K   L+ I+E+ N         + V     +D   +   +  
Sbjct: 414 GGACSDVGRNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENN 473

Query: 88  FPQG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +P       R   +    + ++  G++ +L A  A    GL+++   + ++ + L   ++
Sbjct: 474 YPTTSIHGDRLQRQREEALADFKSGRMSILVA-TAVAARGLDIKNVSH-VINYDLPKGID 531

Query: 143 EHQQMIERIGVTRQR 157
           E+   I R G    R
Sbjct: 532 EYVHRIGRTGRVGNR 546


>gi|323456469|gb|EGB12336.1| hypothetical protein AURANDRAFT_70704 [Aureococcus anophagefferens]
          Length = 3769

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 25/151 (16%)

Query: 49   KEVHDEKIKALEVIIEKA-----NAAPIIVAYHF---NSDLARLQKAFPQGRTLDKD--- 97
            +EV   KI  L   I+ A     N   ++V             L +A  +  TL +    
Sbjct: 2908 REVPSAKIARLLRDIDAAIRGKVNEKVVVVTSIKPAVRHVSLALDRAGLRHVTLSRGDSA 2967

Query: 98   ---PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  ++EW E     +   H  +   GL L    + L     +  + E  Q + R   
Sbjct: 2968 AALSAAVREWRERDDCAVFVLHAGAAAAGLTLTAAAH-LFLLEPFLSVGEEAQAMNRC-- 3024

Query: 154  TRQRQAGFKRAV--FVYYLIAQNTIDELVLQ 182
                + G +R V    YYL  + T++E +L 
Sbjct: 3025 ---HRIGQQRDVRTTAYYL--RGTVEERLLA 3050


>gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           ++ K+  L+ +IE+      I+  +       +                     K    +
Sbjct: 240 NEHKMPLLQTLIEEEWPDRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++  G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTRGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|296271247|ref|YP_003653879.1| helicase domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296094034|gb|ADG89986.1| helicase domain protein [Thermobispora bispora DSM 43833]
          Length = 551

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 20/187 (10%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKI 56
           K+Y    +E+         E IE   + ++  +           D ++ ++       K 
Sbjct: 343 KRYDAPWKEMESQGWIAPAECIEVRVTLTERERL-----AYAMADPDQRYRFCSTTPAKT 397

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKD-PCTIQEWNEGKIPL 111
           +  E ++ +     I++   +   L  L         +G T  ++     Q + +G+IP+
Sbjct: 398 RVAEALVRRHAGEQILIIGQYVDQLDELGAHLNAPVIKGETRVRERERLFQAFRDGEIPV 457

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L          ++L      +     +   +E  Q + R+   +    G +     Y ++
Sbjct: 458 LVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKPGGGGARF----YSIV 512

Query: 172 AQNTIDE 178
           +++T+D+
Sbjct: 513 SRDTVDQ 519


>gi|153819597|ref|ZP_01972264.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae NCTC 8457]
 gi|126509853|gb|EAZ72447.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae NCTC 8457]
          Length = 314

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ +IE+      I+  +      ++                     K    +
Sbjct: 116 NEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 175

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 176 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 230

Query: 161 FK 162
             
Sbjct: 231 HS 232


>gi|308809856|ref|XP_003082237.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116060705|emb|CAL57183.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 1095

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 24/189 (12%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            + +   +     +E  ++A       QL       D         D K ++L   + +  
Sbjct: 919  EAQPLLETFPGEVEWVSTARFGRVHPQL-------DVRVDDVRGDDAKFESLCDALNRHK 971

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASC 119
            A   ++  +   D   L         +         +    + ++  G + +        
Sbjct: 972  AYKTLIFANSPEDADELVGKLDARDVVALAFHGRAKERGVVLDDFIAGDLKVCVC-TDLA 1030

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN--TID 177
              G++     + +  +     +E       R G  R  + G +    V  ++  +  T+D
Sbjct: 1031 ARGIDFPD-LHHVAQYGAAPSMEMFL---HRCG--RTARTGQRGPFHVTCVVDLDAETVD 1084

Query: 178  ELVLQRLRT 186
            E V   L +
Sbjct: 1085 EDVRSELES 1093


>gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ +IE+      I+  +      ++                     K    +
Sbjct: 240 NEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|119383095|ref|YP_914151.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119372862|gb|ABL68455.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 881

 Score = 39.5 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGK 108
           +I+ L  I  +  AA  I+ +   ++ A L+K  P   T      LD+    I ++ +G+
Sbjct: 321 RIEKLMEIRAEDPAAHRIIWHDLEAERAALEKTVPGIATVYGSQDLDQREELIGDFADGR 380

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +  L A P   G G NLQ      VF  +     +  Q I R+      + G        
Sbjct: 381 VQELGAKPVMLGSGTNLQRHCAWHVFLGIGHKFNDFIQAIHRLL-----RFGQPADSVRL 435

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            LI     +  + + L  K    + ++  +
Sbjct: 436 DLIYTEA-EREIRRSLERKWRQHNEMVQKM 464


>gi|229065358|ref|ZP_04200635.1| hypothetical protein bcere0026_53960 [Bacillus cereus AH603]
 gi|228715926|gb|EEL67666.1| hypothetical protein bcere0026_53960 [Bacillus cereus AH603]
          Length = 1096

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 29/162 (17%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA-------RLQKAFPQG--------RTLDKD 97
           K + L+ I+  E +   P I+       +        RLQK   Q         RT   +
Sbjct: 765 KEEKLQEILRTEISEGRPTIIYVSDTGSIVKERDVQPRLQKVAEQVPGAKVAILRTNTVN 824

Query: 98  PCTIQEW-----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           P     W     N G + ++         GL+L      L+F+ L + L    Q   R  
Sbjct: 825 PPKRSAWLKEQVNNG-VNVIICSQELVKVGLDL-LATPTLIFYQLSFSLFTLNQAARR-- 880

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G       +YL  + T    + Q +  K+   + +
Sbjct: 881 ---HWRIGQTNQCRTFYLGYRETFQAQMAQLIAQKNKASEAM 919


>gi|156057539|ref|XP_001594693.1| hypothetical protein SS1G_04501 [Sclerotinia sclerotiorum 1980]
 gi|154702286|gb|EDO02025.1| hypothetical protein SS1G_04501 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1200

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 84   LQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            ++          +D   IQ +W  G I ++ A  A  G G++ Q     ++ + L   LE
Sbjct: 1088 IKAHHFHAHMAAEDKKDIQHQWQVGDIQVVVATIA-FGMGIDKQN-VRFVIHYCLPKTLE 1145

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-------QDLLL 195
             + Q        R  + G   + F+YY       D  + +++  K          Q  +L
Sbjct: 1146 GYYQ-----ETGRAGRDGKPASCFLYY----GFQDTQIYKKMIDKGDGSPDVKNEQRQML 1196

Query: 196  NAL 198
             A+
Sbjct: 1197 EAM 1199


>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 752

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 29/168 (17%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARL------------------QKAFPQGRTLD 95
             I+ L  II+    + +IV   F      +                   +   +G +  
Sbjct: 351 RLIELLNQIIDDDKKSKVIVFSQFRDTTKSIYENCNKNNLKALRFYGQASRENDKGLSQK 410

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K   TI  +      +     +    G+++    + ++ +          Q        R
Sbjct: 411 KQIETINAFKNEDYNI-LISTSVAEEGIDI-PSVDYVILYEPVPSEIRMIQ--------R 460

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS-TIQDLLLNALKKET 202
           + + G K +  ++ L+ + T+DE      + K   +++ + N+ KKE 
Sbjct: 461 KGRTGRKHSGEMFILMTKGTLDESYYWSSQRKEKAMRNNVYNSHKKEI 508


>gi|45442928|ref|NP_994467.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45437795|gb|AAS63344.1| putative DEAD-box helicase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 422

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD------EEKHWKE-----VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +           KE      ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 258 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|323496129|ref|ZP_08101189.1| ATP-dependent helicase HepA [Vibrio sinaloensis DSM 21326]
 gi|323318873|gb|EGA71824.1| ATP-dependent helicase HepA [Vibrio sinaloensis DSM 21326]
          Length = 969

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           + G  + A   A K +   ++        E+  W +        LE I EK +   +++A
Sbjct: 455 MLGGKMTAEARAVKNLYPEEIFQEF--EGEDSSWWQFDSRVNWLLEKITEKRSEKILVIA 512

Query: 75  YHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHG 122
              ++ L            R          L++D         EG   +L         G
Sbjct: 513 SRASTALQLEQALREREGIRATVFHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEG 571

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            N Q+  N LV F L ++ +  +Q I R+      + G  R + V+    Q T
Sbjct: 572 RNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQHRDIDVHVPYLQGT 618


>gi|319790399|ref|YP_004152032.1| helicase domain protein [Thermovibrio ammonificans HB-1]
 gi|317114901|gb|ADU97391.1| helicase domain protein [Thermovibrio ammonificans HB-1]
          Length = 1051

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 45/195 (23%)

Query: 1   MKQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
           +  Y + + EL  +++       E I      +   K  QL     Y + E+  K +   
Sbjct: 575 INVYERIE-ELLAEVEESDSFDLEKILKDGEVTVYDKN-QLTGEF-YENLERDVKAIEVL 631

Query: 52  --------HDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQ--------- 90
                    D K++ L  ++EK         I++   F      L+K   +         
Sbjct: 632 YSKWSKVKSDPKVEELLRLLEKDERLTKARKILIFTEFAETAEYLKKKLAEEFGNSVISY 691

Query: 91  -----GRTLDK-----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    DK     DP   +E  +  I +          G+NL +  N+++ + + W+
Sbjct: 692 TSTSGRSERDKILENFDPNLPKEKQKDDIRI-LITTDVLAEGINL-HRANVIINYDIPWN 749

Query: 141 LEEHQQMIERIGVTR 155
                Q + RI    
Sbjct: 750 PTRVLQRVGRINRVG 764


>gi|270158478|ref|ZP_06187135.1| RNA polymerase-associated protein RapA [Legionella longbeachae
           D-4968]
 gi|289166689|ref|YP_003456827.1| RNA polymerase-associated protein HepA [Legionella longbeachae
           NSW150]
 gi|269990503|gb|EEZ96757.1| RNA polymerase-associated protein RapA [Legionella longbeachae
           D-4968]
 gi|288859862|emb|CBJ13848.1| RNA polymerase-associated protein HepA [Legionella longbeachae
           NSW150]
          Length = 951

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 525 ERDRAAAYFAEQENGAQALVCSEIGSEGR--NFQF-AHHLVLFDLPLNPDLVEQRIGRLD 581

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G +  + ++     N++ E + +
Sbjct: 582 -----RIGQRHTIKIHVPYLLNSVQEKLFR 606


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           DEK++ L  +IE+      IV  +       +                     K    ++
Sbjct: 241 DEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ EGK+ +L A       GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 301 QFTEGKLDILVA-TDVAARGLHISDVSH-VYNYDLPDDCEDY---VHRIG--RTGRAG-K 352

Query: 163 RAVFV 167
           + V V
Sbjct: 353 KGVSV 357


>gi|67920674|ref|ZP_00514194.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67858158|gb|EAM53397.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 24/168 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPC 99
           E K      + KI+ LE ++ + +   +++  + N+ + R+ + F       +T  K+  
Sbjct: 312 EAKEIAAGTEGKIRVLEELVCEHDQDSLLIFTNDNATVYRISQEFLIPAITYQTPVKERH 371

Query: 100 TI-QEWNEGKIPLLFAHPASCGHGLNLQYGGN-----ILVFFSLWWDLEEHQQMIERIGV 153
            I  ++ EG    L        H LN   G +     + +  S      E+ Q + RI  
Sbjct: 372 DILTKFREGIYKSLVTS-----HVLN--EGVDVPEVKVAIIISGTSSAREYVQRLGRILR 424

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI----QDLLLNA 197
             +   G  +   +Y ++A++T +E   QR +  +      Q  LL++
Sbjct: 425 KGK---GKNKLATLYEIVAEDTSEERTSQRRKEGTKTPKPQQLELLDS 469


>gi|328475151|gb|EGF45935.1| hypothetical protein LM220_00915 [Listeria monocytogenes 220]
          Length = 207

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +  EK    E +I        I+   +      LQ+AFP                  KI 
Sbjct: 82  LSSEKFTITESLI-AGKEETTIIFCKYRRSEEALQQAFPNV----------------KIT 124

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                 A   +GLNLQ+  N +++F   +D  +  Q   RI      + G  +  + + L
Sbjct: 125 TF----AKSSYGLNLQF-YNQIIYFDKTFDYSQRDQSERRI-----YRTGQTQDCYYHDL 174

Query: 171 IAQNTIDELVLQRLRTKST 189
                +D L+   +  K  
Sbjct: 175 SGNVGLDSLIDTNISKKQA 193


>gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
 gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ +IE+      I+  +      ++                     K    +
Sbjct: 240 NEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619]
 gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 483

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IE  N AS+TV             E+  +     +K K L  ++ + 
Sbjct: 294 LAKQWTTDPAIVEIEPENVASETV-------------EQHVFAVAGSDKYKLLYNLVTQN 340

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
               ++V  +   ++ R+++   +               K   T++ + EG+I +L A  
Sbjct: 341 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVA-T 399

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L  D +++   + RIG  R  +AG
Sbjct: 400 DVAGRGIHI-DGISHVINFTLPEDPDDY---VHRIG--RTGRAG 437


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
              + K + L  +I K N   ++V  ++      L K   +                   
Sbjct: 226 VDQERKRELLSELIGKKNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+ EGK  ++ A       GL++Q   + +V F + +  E++   + RIG  R  +A
Sbjct: 286 ALDEFKEGKARVMVA-TEVAARGLDIQALPH-VVNFDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G K
Sbjct: 339 GLK 341


>gi|254497386|ref|ZP_05110187.1| ATP-dependent helicase HepA [Legionella drancourtii LLAP12]
 gi|254353391|gb|EET12125.1| ATP-dependent helicase HepA [Legionella drancourtii LLAP12]
          Length = 949

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D+      E   G   L+ +   S G   N Q+  + LV F L  + +  +Q I R+ 
Sbjct: 521 ERDRAAAYFAEQENGAQALICSEIGSEGR--NFQF-AHHLVLFDLPINPDLLEQRIGRLD 577

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                + G    + ++     NT  E + +
Sbjct: 578 -----RIGQAHDIEIHVPYLANTAQEKLFR 602


>gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
 gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
          Length = 488

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 316 NVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAA 375

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 376 QLSGDVPQHKRIRTLENFREGRISVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 431

Query: 147 MIERIGVTRQRQAG 160
            + RIG  R  +AG
Sbjct: 432 -VHRIG--RTGRAG 442


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPC 99
              + K + L  +I K N   ++V  ++      L K   +                   
Sbjct: 226 VDQERKRELLSELIGKKNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+ EGK  ++ A       GL++Q   + +V F + +  E++   + RIG  R  +A
Sbjct: 286 ALDEFKEGKARVMVA-TEVAARGLDIQALPH-VVNFDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G K
Sbjct: 339 GLK 341


>gi|326803719|ref|YP_004321537.1| ATP-dependent DNA helicase, RecQ family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651199|gb|AEA01382.1| ATP-dependent DNA helicase, RecQ family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 19/134 (14%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTL 94
              K    +K   L  ++E     P I+  H   +L  L +                +T 
Sbjct: 206 GQLKLNEKDKFLHLNSLLETL-PKPGIIYVHNKMELEELYQDLKASSQLKLASYHADKTS 264

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     +++ +G +  + A  ++ G G+N Q     ++ +     L ++ Q   R G  
Sbjct: 265 EERLQVQEQFQKGHLDAILA-TSAFGMGIN-QANVRFVIHYHAPQSLADYLQESGRCG-- 320

Query: 155 RQRQAGFKRAVFVY 168
              + G +  V +Y
Sbjct: 321 ---RDGQEALVLLY 331


>gi|37676486|ref|NP_936882.1| hypothetical protein VVA0828 [Vibrio vulnificus YJ016]
 gi|37201028|dbj|BAC96852.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 4392

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 50   EVHDEKIKALEVIIEKANAAPIIVAYHFN--SDL--ARLQKAFPQGR--------TLDKD 97
            E+  +K + LE  I + NA+ +     F+   DL  A ++K  P+ +        T  K 
Sbjct: 2597 EIDADKYEKLEETIRELNASTLTADTGFSVYDDLKAALIEKGIPEDQIAFIHDYNTTKKK 2656

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT--- 154
                 +  +G + +L       G G N+Q     L      W   + +Q   RI      
Sbjct: 2657 EALFDQVRDGDVRVLIGSSMKMGAGTNVQDRLVALHHMDAPWRPSDMEQREGRIVRQGNT 2716

Query: 155  ---RQRQAGFKRA--VFVYYLIAQNTIDELVLQRLRTKS 188
               R  +AG      V +     Q + D ++ Q L  K+
Sbjct: 2717 FYERAAKAGKPEDFEVELVAYTTQGSSDPVMWQILERKA 2755


>gi|294012091|ref|YP_003545551.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675421|dbj|BAI96939.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 259

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
            K    +K +AL  ++E  +    ++  +  + +  L K+  +      +          
Sbjct: 36  VKVDSRKKREALRAMLEAEDVLSAVIFCNRKTTVRELNKSLQRHGFRSGEIHGDIDQSAR 95

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ +  G + +L A   +   GL++  G + +  F   W  +++   + RIG  R  
Sbjct: 96  IAELERFRAGTVNILVASDVAA-RGLDI-KGVSHVFNFDAPWHPDDY---VHRIG--RTG 148

Query: 158 QAGFKRAVFVYYLIAQNTID--ELVLQRLRTKSTIQD 192
           +AG K     Y  +  +  +  + + + ++ K    D
Sbjct: 149 RAGAKG--VAYTFVTADDAEAIDNIQKLIKQKIETID 183


>gi|323526321|ref|YP_004228474.1| SNF2-like protein [Burkholderia sp. CCGE1001]
 gi|323383323|gb|ADX55414.1| SNF2-related protein [Burkholderia sp. CCGE1001]
          Length = 769

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 21/154 (13%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  ++  E  N    +V   +        RL+  F                +K   
Sbjct: 590 KEEELLRLVRGELLNRRRTLVYTTYTGTRDTSVRLKNLFDAVGVRASVLRASVSAEKRED 649

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +  E    ++  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 650 WVADQLERGADVIITNPELVKTGLDLLEFP-TIAFLQSGYNVYTLQQAARRSW-----RI 703

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G    V V +L  + T     L+ +  K  +   
Sbjct: 704 GQTLDVTVRFLGYEGTAQMRCLKLMAQKIAVSQS 737


>gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895]
 gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895]
          Length = 421

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|302851980|ref|XP_002957512.1| hypothetical protein VOLCADRAFT_68317 [Volvox carteri f.
           nagariensis]
 gi|300257154|gb|EFJ41406.1| hypothetical protein VOLCADRAFT_68317 [Volvox carteri f.
           nagariensis]
          Length = 544

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            G VY       + V +E  K     + + N   ++ A H+++ L+            D+
Sbjct: 262 CGIVYCQSRGECERVAEELRK-----VRQPNGR-MLNAAHYHAALSH-----------DE 304

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  W+  ++ ++ A  A  G G+N +     ++ FSL   LE + Q   R G    
Sbjct: 305 REQVQTRWSNDEVQVIVATIA-FGMGIN-KPDVRFVIHFSLPKSLEGYHQETGRGGRDGA 362

Query: 157 RQA 159
              
Sbjct: 363 EAI 365


>gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
 gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
          Length = 422

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116]
 gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +++K+  L+ +IE+      IV  +       +                     K    +
Sbjct: 240 NEDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++  G++ LL A       GL++    + +  F L  D E++   + RIG T R   +G
Sbjct: 300 EQFTRGEVDLLVA-TDVAARGLHIPQVTH-VFNFDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
 gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +++K+  L+ +IE+      IV  +       +                     K    +
Sbjct: 240 NEDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++  G++ LL A       GL++    + +  F L  D E++   + RIG T R   +G
Sbjct: 300 EQFTRGEVDLLVA-TDVAARGLHIPQVTH-VFNFDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|163846418|ref|YP_001634462.1| helicase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524187|ref|YP_002568658.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667707|gb|ABY34073.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448066|gb|ACM52332.1| helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL    N  + + L W+    +Q   R+    Q QA     V  Y L   N +D +V+
Sbjct: 550 GINLHERYNAAIHYDLPWNPNRLEQREGRVDRYGQ-QAPTVVTVRYYGL--NNEVDGVVI 606

Query: 182 QRLRTKS 188
             L  K+
Sbjct: 607 DVLLRKA 613


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQ 102
            K + +E I+ +     ++V          LQ    +            +        + 
Sbjct: 376 HKEEKMEEILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLD 435

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + + +  +L A       GL+++   +++V + +  ++E++   + RIG  R  +AG  
Sbjct: 436 RFRKDERAILVA-TDVAARGLDIKD-LDVVVNYDMPLNIEDY---VHRIG--RTGRAGKT 488

Query: 163 RAVFVYYLIAQN--TIDELVLQRLRTKSTIQDLL 194
              + +   A N  TI +L+   LR K  +   L
Sbjct: 489 GDAYSFVSSADNSKTIRDLIDLLLRAKQEVSPEL 522


>gi|238755777|ref|ZP_04617109.1| ATP-dependent RNA helicase rhlB [Yersinia ruckeri ATCC 29473]
 gi|238706004|gb|EEP98389.1| ATP-dependent RNA helicase rhlB [Yersinia ruckeri ATCC 29473]
          Length = 340

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD------EEKHWKE-----VHDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +           KE      ++EK++ L+ +IE+    
Sbjct: 109 SATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 168

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++++ +G + +L A     
Sbjct: 169 RCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA-TDVA 227

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 228 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 267


>gi|330878697|gb|EGH12846.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 39  KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 98

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  I +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 99  WILDQVDRGIDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 152

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 153 GQKQDVRV 160


>gi|265755241|ref|ZP_06090011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234383|gb|EEZ19973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1946

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +T       I   N G + +LF   +  G G+N Q     +      W   + QQ   R 
Sbjct: 1512 KTDKARKGVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDGRG 1571

Query: 152  GVTR----QRQAGFKRAVFVY 168
                    +R AG    V +Y
Sbjct: 1572 VRAGNEIAKRFAGNNVDVIIY 1592


>gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
 gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
          Length = 422

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|158335611|ref|YP_001516783.1| type III restriction enzyme, res subunit [Acaryochloris marina
           MBIC11017]
 gi|158305852|gb|ABW27469.1| type III restriction enzyme, res subunit [Acaryochloris marina
           MBIC11017]
          Length = 490

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----CTIQEWN 105
             + K++ L  ++ + +    ++    N+ + R+ + F       K P       +Q + 
Sbjct: 318 GTEGKLRILADLLAQHHPEQTLIFTDDNATVYRISQDFLIPAITHKTPVKERHDILQRFR 377

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G  P L A       G+++    +I +  S      E+ Q   R+G   ++     +  
Sbjct: 378 SGDYPTLVAS-RVLNEGVDVPE-ASIAIVLSGTGSTREYVQ---RLGRVLRKGKDPDKLA 432

Query: 166 FVYYLIAQNTIDELVLQRLR 185
            +Y +IA+NT +E   +R +
Sbjct: 433 LLYEVIAENTSEENTARRRQ 452


>gi|320335744|ref|YP_004172455.1| type III restriction protein res subunit [Deinococcus maricopensis
           DSM 21211]
 gi|319757033|gb|ADV68790.1| type III restriction protein res subunit [Deinococcus maricopensis
           DSM 21211]
          Length = 471

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E +      D K++ LE I+        ++    N+ + R+ + F       + P     
Sbjct: 307 EARALAYGTDGKLRVLEEILANHPKDRTLIFTDDNATVYRISREFLIPAITHQTPVKERH 366

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +Q++  G+  ++         G+++      +V           ++ I+R+G    RQ
Sbjct: 367 ALLQKFRSGEYRVIVTS-RVLNEGVDVPEASVAVVLSG----TATEREHIQRLGRIL-RQ 420

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           A  KRAV +Y ++ + T +E V Q+ R 
Sbjct: 421 AKDKRAV-LYEVVTEGTSEERVSQQRRG 447


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD-- 97
           ++++ + +   K + L+ ++E+      I+  H   +      RL++   +   L+ D  
Sbjct: 216 DQEYVEVLPARKYEKLKEVLEE--GFYGIIFCHTKRETRELSERLRRDGFRADALNGDMS 273

Query: 98  ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 T   + EGKI +L A       GL+++   + ++ +SL  + E++   I R G 
Sbjct: 274 QAARERTFNRFKEGKINVLVA-TDVAARGLDVREISH-VINYSLPMNPEQYIHRIGRTGR 331

Query: 154 TRQR 157
             +R
Sbjct: 332 MGKR 335


>gi|284005657|ref|YP_003391477.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283820841|gb|ADB42678.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 1674

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 17/183 (9%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
            +A++ ++  QL+      D  K  + V  +  ++   +        + V   FN      
Sbjct: 1235 AAAEILRLYQLS------DSYKGTQLVFADVYQSPANLF-ADEDERLCVGARFNLFDDLK 1287

Query: 85   QKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             K   +G             DK      +   G++ ++       G G+N+Q     L  
Sbjct: 1288 MKLVAEGIPACEVAVCPAEADKREAVFAKVRTGEVRVMLGTSERMGVGVNVQERLVGLHH 1347

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                    + +Q   RI       A +   + +       T+D     RL  K    + +
Sbjct: 1348 LDAPNRPTDFEQRNGRIIRQGNAHAAWNMPIEILTYGVDKTLDATAYGRLAIKQKFINQV 1407

Query: 195  LNA 197
            L  
Sbjct: 1408 LKG 1410


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP 89
           +  GA     +K +     +K   L  ++E   ++  +V          +     +K FP
Sbjct: 348 IVGGACSDVVQKFFSVSKFQKRNKLIELLESNGSSKCLVFVEQKRTTDFIATFLCEKNFP 407

Query: 90  -----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    ++++  GK+ +L A  +    GL+++   + +V F L   ++E+
Sbjct: 408 ATSIHGDRDQREREEALRDFKTGKMDILVA-TSVAARGLDIKNVAH-VVNFDLPKTIDEY 465

Query: 145 QQMIERIGVTRQR 157
              I R G    R
Sbjct: 466 VHRIGRTGRVGNR 478


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 24/144 (16%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +++    +     +Y  EE       + K  A+  II +     +IV  +     +RL +
Sbjct: 235 ARSNATAENVTQIIYKVEE-------EAKRDAVSFIIRERGLKQVIVFSNTKIGASRLAR 287

Query: 87  AFP----QGRTLDKDP------CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                  +   +  D         ++++  G I +L A       GL++      ++ F 
Sbjct: 288 QLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVA-TDVAARGLDIAELPC-VINFD 345

Query: 137 LWWDLEEHQQMIERIGVTRQRQAG 160
           L ++ E++   + RIG  R  +AG
Sbjct: 346 LPYNAEDY---VHRIG--RTGRAG 364


>gi|153840670|ref|ZP_01993337.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|149745658|gb|EDM56797.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
          Length = 416

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 143 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRGEKILVIASRASTALQLEQALRER 198

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 199 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 245

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 246 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 288


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
           D K   L  +++       +V         RL K   +           ++  +    + 
Sbjct: 230 DAKQALLIDLLDAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALD 289

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + EGK+ +L A       G+++  G   +  + L    E +   + RIG T  R     
Sbjct: 290 GFREGKVRVLVA-TDVAARGIDI-PGVGYVYNYELPNVPENY---VHRIGRT-ARAGADG 343

Query: 163 RAV 165
           RAV
Sbjct: 344 RAV 346


>gi|14279304|gb|AAK58563.1|AF265295_1 Rad25-like protein [Methanosarcina thermophila]
          Length = 489

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCTI-QEWNE 106
            D KI+ L  I+E+     + +    N  + R+   F       RT  K+  +I +++  
Sbjct: 318 SDSKIEKLREILEEHREDRVFIFTEHNRLVHRISNTFFIPAITYRTPSKERNSILEKFRI 377

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G    +         G+++    N+ V  S       + Q + RI      +    +   
Sbjct: 378 GSYRAVVTS-KVLDEGIDVPE-ANVGVIVSGTGSKRAYVQRLGRIL-----RKKEGKKAV 430

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +Y +IA  T +       R K  + + 
Sbjct: 431 LYEIIASETSETG--TAQRRKEALDNA 455


>gi|330960679|gb|EGH60939.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 614

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 436 KEQALLDLCLAEKALNRRVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 495

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    W +   QQ   R       + 
Sbjct: 496 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGWKVYTVQQAARRSW-----RI 549

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 550 GQKQDVRV 557


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score = 39.2 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|289770106|ref|ZP_06529484.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289700305|gb|EFD67734.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 548

 Score = 39.2 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 14/152 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQ 90
           LA      +E+  +    D K K  E I+ +     I+V   +   L  L +       +
Sbjct: 378 LAYATAETEEKYRFCATTDTKRKVTEAIVRRFAGQQILVIGQYIDQLDELGEHLGAPVIK 437

Query: 91  GRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T + +     + + +G+I +L          ++L      +     +   +E  Q + 
Sbjct: 438 GETSNAQREKLFESFRQGEISVLVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLG 496

Query: 150 RIGVTRQ--RQAGFKRAVFVYYLIAQNTIDEL 179
           R+   +    QA        Y ++A++T+D+ 
Sbjct: 497 RVLRPKADGHQA------HFYSVVARDTLDQD 522


>gi|76802558|ref|YP_327566.1| helicase-like protein [Natronomonas pharaonis DSM 2160]
 gi|76558423|emb|CAI50014.1| helicase homolog [Natronomonas pharaonis DSM 2160]
          Length = 469

 Score = 39.2 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----RTLDKDPCTI 101
                  +K+  L+ ++++      I+    N     + + F           D+    +
Sbjct: 323 EIARTATKKLDTLDNLLKRHYDDRAIIFTANNDFAYDISQEFVVPCITHQTETDERTAIL 382

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +  G+  +L         G+++    N+ +  S      ++ Q + RI      +   
Sbjct: 383 ERFRTGEYSMLVTS-QVLDEGIDV-PAANVGIILSGSASKRQYAQRLGRILRPTDGR--- 437

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRT 186
            +   +Y +IA++T++  V +R R 
Sbjct: 438 -QPARLYEIIAEDTVETYVSERRRQ 461


>gi|312374467|gb|EFR22018.1| hypothetical protein AND_15887 [Anopheles darlingi]
          Length = 606

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               +R  + G    V V YL+A  T D+++   L+ K  I
Sbjct: 471 TQAESRAHRIGQMDNVTVRYLLAHKTADDIIWAMLQRKQDI 511


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ ++E+    
Sbjct: 198 SATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|294055537|ref|YP_003549195.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614870|gb|ADE55025.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 945

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQE------ 103
           +IK L  ++ + N + +++       +  +  A       +     ++   +Q       
Sbjct: 465 RIKWLAELLRELNNSKVLLICRSKEKVEAIYSALLEEINVKAAVFHEELTLLQRDRNAAW 524

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +   +         G N Q+  + LV F L  + E  +Q I R+      + G   
Sbjct: 525 FADPEGARILLCSEIGSEGRNFQF-AHHLVLFDLPMNPELLEQRIGRLD-----RIGQTE 578

Query: 164 AVFVY 168
            + V+
Sbjct: 579 TIRVH 583


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 33/170 (19%)

Query: 50  EVHDEKIKALEVIIEK-ANAAP---IIVAYHFNSDLARL----------------QKAFP 89
           EV   K++ L+ I+       P   IIV  +F      +                Q    
Sbjct: 341 EVDHPKLEKLKEIVSSQLKEKPESRIIVFTNFRDTAEVISRELQSMGVPAVRFVGQANRE 400

Query: 90  QGRTLDKDPCT--IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             R L +      ++ +  G I +L A  +    GL++    +++VF+          Q 
Sbjct: 401 NDRGLRQREQVEIVERFRAGDIKVLVA-TSVGEEGLDIPE-VDLVVFYEAIPSEIRSIQ- 457

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL-VLQRLRTKSTIQDLLLN 196
                  R+ + G K+   +  L+ + T DE      LR +  + + L +
Sbjct: 458 -------RKGRTGRKKEGRIVVLVTKGTRDEAYFYISLRKERAMFERLRD 500


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------- 89
           G+   +  +H   V D +K  AL  ++  ++    ++          L            
Sbjct: 375 GSTSENITQHVLYVEDMDKKSALLDLLAASDDGLTLIFVETKRMADALTDFLIMQNLRAT 434

Query: 90  ---QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R+  +    +  +  GK  LL A  A    GL++    + ++ + L  D++++  
Sbjct: 435 AIHGDRSQSERERALAAFRSGKASLLVA-TAVAARGLDIPNVTH-VINYDLPNDIDDY-- 490

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLL 194
            + RIG  R  +AG       +     +N + E+V      K  + + L
Sbjct: 491 -VHRIG--RTGRAGNTGVATAFLNRGNKNVVKEMVDLLTEAKQEVPEFL 536


>gi|224090011|ref|XP_002335018.1| hypothetical protein POPTRDRAFT_588296 [Populus trichocarpa]
 gi|222832653|gb|EEE71130.1| hypothetical protein POPTRDRAFT_588296 [Populus trichocarpa]
          Length = 151

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                +     + +L        +GLNL    + +V      +  +  Q + R+      
Sbjct: 84  RTDRHQQETKSVQVLLLLIQHGANGLNLLEAQH-VVLVEPLLNPADEAQAVSRV-----H 137

Query: 158 QAGFKRAVFVYYLI 171
           + G ++   V+  I
Sbjct: 138 RFGQEKRTLVHRFI 151


>gi|88859130|ref|ZP_01133771.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas tunicata D2]
 gi|88819356|gb|EAR29170.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas tunicata D2]
          Length = 964

 Score = 39.2 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-FPQGRTLDKDPCTI 101
           D    W      ++K  +V++  A+A   +       +   ++ A F +G ++ +     
Sbjct: 484 DPRVDWLIDKLLELKREKVLVICAHAQTALTLEQELREREAIKAAVFHEGMSIIERDRAA 543

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +        +L         G N Q+  + LV F L  + +  +Q I R+      + 
Sbjct: 544 AFFASEDNAAQVLLCS-EIGSEGRNFQF-AHTLVLFDLPLNPDLLEQRIGRLD-----RI 596

Query: 160 GFKRAVFVYYLIAQNTIDELVLQ 182
           G    V ++     NT  E++ +
Sbjct: 597 GQTEDVQIHVPYFANTAQEVLYR 619


>gi|320155565|ref|YP_004187944.1| ATP-dependent DNA helicase RecQ family [Vibrio vulnificus MO6-24/O]
 gi|319930877|gb|ADV85741.1| ATP-dependent DNA helicase RecQ family [Vibrio vulnificus MO6-24/O]
          Length = 639

 Score = 39.2 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTI 101
           +++K  AL  I+++A  AP IV        +++                           
Sbjct: 214 NEDKADALLKIVQQAPNAPTIVYVTLQHTASQVATLLQDEGIRASAYHAGLDNELRSTIQ 273

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++ +G++  + A  A  G G++ +     ++ F L   +E + Q I R       + G 
Sbjct: 274 TQFMQGQLDCIVATIA-FGMGVD-KADIRRVIHFDLPKSIENYAQEIGR-----AGRDGQ 326

Query: 162 KRAVFV 167
           K    V
Sbjct: 327 KSDCIV 332


>gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 437

 Score = 39.2 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +++K+  L+ +IE+      IV  +       +                     K    +
Sbjct: 240 NEDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++  G++ LL A       GL++    + +  F L  D E++   + RIG T R   +G
Sbjct: 300 EQFTRGEVDLLVA-TDVAARGLHIPQVTH-VFNFDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|325968256|ref|YP_004244448.1| helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323707459|gb|ADY00946.1| helicase domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 1037

 Score = 39.2 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 24/177 (13%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
            ++   V   KI   + I+  E    + IIV   F      L K   +           +T
Sbjct: 856  RNIASVASAKISITKEIVKAEVGIGSKIIVFTQFIRQAEELYKVLKEELGPIITLITSKT 915

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             D+D    + +  G   ++ A       G+++      ++           +QMI+RIG 
Sbjct: 916  SDRDS-IFKAFARGAYKVIVA-TTVLDEGIDVPDADVAIILSG----TGSRRQMIQRIGR 969

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-----QDLLLNALKKETIHV 205
               R +  K    +Y ++A+NTI+E + +    K  +     +  L + +++   HV
Sbjct: 970  VV-RASDDKVEARIYEVVARNTIEEALSEERHVKGEVLEIECRRYLADEIRRLINHV 1025


>gi|269861020|ref|XP_002650226.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
 gi|220066356|gb|EED43841.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
          Length = 443

 Score = 39.2 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 53/126 (42%), Gaps = 12/126 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------DKD 97
           E++     +++K K L   ++    A +++  +  S   +L++   + R        DK 
Sbjct: 252 EQRVEIVSNNDKEKKLLYTLQDFRDARVLIFCNKKSTCDKLERFLLENRFRGVALHGDKS 311

Query: 98  PCT----IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                     + +G+ P+L A       GL+++   ++++ + L  +LE++   + R   
Sbjct: 312 QHVRDVIFDNFKKGRDPILIA-TDVAARGLDVKD-IHLVINYDLPTNLEDYVHRVGRTAR 369

Query: 154 TRQRQA 159
              ++ 
Sbjct: 370 GTAKEG 375


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQEW 104
           K + L  ++ +      +V         R+ K   Q     +D             ++++
Sbjct: 226 KAEMLIELLREKQDGATLVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDF 285

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             G   +L A       G+++   G+ +V F +    E +   I R G 
Sbjct: 286 KRGSFNILVA-TDIASRGIDVAGIGH-VVNFDMPDTAESYTHRIGRTGR 332


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
           W     +K+ AL  I+E      +++          L +                T    
Sbjct: 226 WLVQGLQKLDALTRILEAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLR 285

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T+++  +G + ++ A       GL++Q   + +V + + +D E +   + RIG T R 
Sbjct: 286 EKTVEQLKDGTLDIVVA-TDVAARGLDVQRISH-VVNYDIPYDTESY---VHRIGRTGRA 340

Query: 157 RQAGFK------RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G        R + + + I + T  ++   +L ++  +    ++  K++ I
Sbjct: 341 GRQGQAIIFVAPREMRMLHAIEKATRQQIARLQLPSRREVNQRRIDQFKEKII 393


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
           W     +K+ AL  I+E      +++          L +                T    
Sbjct: 226 WLVQGLQKLDALTRILEAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLR 285

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T+++  +G + ++ A       GL++Q   + +V + + +D E +   + RIG T R 
Sbjct: 286 EKTVEQLKDGTLDIVVA-TDVAARGLDVQRISH-VVNYDIPYDTESY---VHRIGRTGRA 340

Query: 157 RQAGFK------RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G        R + + + I + T  ++   +L ++  +    ++  K++ I
Sbjct: 341 GRQGQAIIFVAPREMRMLHAIEKATRQQIARLQLPSRREVNQRRIDQFKEKII 393


>gi|27365182|ref|NP_760710.1| ATP-dependent DNA helicase, RecQ family [Vibrio vulnificus CMCP6]
 gi|27361329|gb|AAO10237.1| ATP-dependent DNA helicase, RecQ family [Vibrio vulnificus CMCP6]
          Length = 639

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTI 101
           +++K  AL  I+++A  AP IV        +++                           
Sbjct: 214 NEDKADALLKIVQQAPNAPTIVYVTLQHTASQVATLLQDEGIRASAYHAGLDNELRSTIQ 273

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++ +G++  + A  A  G G++ +     ++ F L   +E + Q I R       + G 
Sbjct: 274 TQFMQGQLDCIVATIA-FGMGVD-KADIRRVIHFDLPKSIENYAQEIGR-----AGRDGQ 326

Query: 162 KRAVFV 167
           K    V
Sbjct: 327 KSDCIV 332


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 21/153 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPC 99
           EE       DEK + L+ ++ + N    IV  +   D+  +Q+   +       L  D  
Sbjct: 508 EEALVIVPEDEKRRTLKKLLRRENVQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLA 567

Query: 100 ------TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 T++ +  G++  L     +   G+++  G + +  + L ++ E++   + RIG 
Sbjct: 568 QSLRFSTLERFRSGELKFLVCSDVAA-RGIDI-GGLSHVFNYDLPFNAEDY---VHRIG- 621

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R  +AG +     +        D  +L+ + T
Sbjct: 622 -RTGRAGNEG----HAFSLATPRDRRLLEAIET 649


>gi|330962838|gb|EGH63098.1| SNF2-related:helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 70

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G  R V V   +A +TID+ + Q L  K  +   L++
Sbjct: 10  QAEDRAYRNGQLRLVVVKIPLADDTIDQQLWQMLMDKRALASDLID 55


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            ++K  AL  ++  ++    ++         +L                 RT  +    +
Sbjct: 374 DEDKKSALLDLLSASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERAL 433

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  GK  LL A  A    GL++    + ++ + L  D++++   + RIG  R  +AG 
Sbjct: 434 GSFKTGKADLLVA-TAVAARGLDIPNVTH-VINYDLPGDVDDY---VHRIG--RTGRAGN 486

Query: 162 K 162
            
Sbjct: 487 T 487


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
              + K + L  +I K N   ++V  ++     +L +               +       
Sbjct: 226 VDEERKREMLSELIGKKNWQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRR 285

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+ EGK  ++ A       GL++Q G   +V + + +  E++   + RIG  R  +A
Sbjct: 286 ALKEFKEGKARVMVA-TEVAARGLDIQ-GLPHVVNYDMPFLAEDY---VHRIG--RTGRA 338

Query: 160 GFK 162
           G +
Sbjct: 339 GQQ 341


>gi|256786215|ref|ZP_05524646.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 545

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 14/152 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQ 90
           LA      +E+  +    D K K  E I+ +     I+V   +   L  L +       +
Sbjct: 375 LAYATAETEEKYRFCATTDTKRKVTEAIVRRFAGQQILVIGQYIDQLDELGEHLGAPVIK 434

Query: 91  GRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T + +     + + +G+I +L          ++L      +     +   +E  Q + 
Sbjct: 435 GETSNAQREKLFESFRQGEISVLVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLG 493

Query: 150 RIGVTRQ--RQAGFKRAVFVYYLIAQNTIDEL 179
           R+   +    QA        Y ++A++T+D+ 
Sbjct: 494 RVLRPKADGHQA------HFYSVVARDTLDQD 519


>gi|254229273|ref|ZP_04922691.1| type III restriction enzyme, res subunit family [Vibrio sp. Ex25]
 gi|262393165|ref|YP_003285019.1| RNA polymerase associated protein RapA [Vibrio sp. Ex25]
 gi|151938197|gb|EDN57037.1| type III restriction enzyme, res subunit family [Vibrio sp. Ex25]
 gi|262336759|gb|ACY50554.1| RNA polymerase associated protein RapA [Vibrio sp. Ex25]
          Length = 969

 Score = 39.2 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRSEKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 576 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHIPYLKGT 618


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score = 39.2 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 18/126 (14%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFP-----QGRTLDK 96
            + + +++K + L  ++        +V         +L     Q+ FP       RT  +
Sbjct: 416 EYVQSYNDKCQMLMDLVHAVQG-LTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQE 474

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +  GK P+L A       GL++ +  + ++ F L  D++++   + RIG  R 
Sbjct: 475 REWALKSFRSGKTPILVA-TDVAARGLDIPHVTH-VINFDLPSDVDDY---VHRIG--RT 527

Query: 157 RQAGFK 162
            +AG K
Sbjct: 528 GRAGKK 533


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score = 39.2 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD------PCTIQ 102
             K++AL+ +++      +I+              L+ A  Q   L+ D        T++
Sbjct: 295 SHKLEALQRVLDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVE 354

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
               G + +L A       GL+++  G +++ + + +D E +   + RIG T R  + G 
Sbjct: 355 RLRSGSVDVLVA-TDVAARGLDVERIG-LVINYDMPFDSEAY---VHRIGRTGRAGRTGE 409


>gi|219971722|gb|ACL68521.1| vasa-like protein [Pleurodeles waltl]
          Length = 727

 Score = 39.2 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             GA    E+         K   L  I++       +V           + +    R   
Sbjct: 528 VGGACSDVEQIIIPVGQHGKKDKLVEILQGLGIERTMVFVKTKK-----RASIHGDRLQK 582

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    + ++  GK  +L A       GL+++   ++++ + L  ++EE+   I R G   
Sbjct: 583 EREEALADFRFGKCNVLVA-TNVAARGLDIENVQHVII-YDLSDNIEEYVHRIGRTGRCG 640


>gi|288801544|ref|ZP_06406991.1| DNA methylase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331521|gb|EFC70012.1| DNA methylase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 308

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 119 KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 175

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 176 RAVAVHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNL 233

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 234 LHNKQ----LFINQLKTNTLG 250


>gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
 gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
          Length = 421

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    ++E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|320321569|gb|EFW77678.1| helicase domain-containing protein [Pseudomonas syringae pv. glycinea
            str. B076]
          Length = 1592

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ--- 146
            +  T  +      E N G + +L       G G N+Q     L      W   + +Q   
Sbjct: 1206 EANTDLQKSKLFDEMNRGDVRVLLGSTTKMGAGTNVQRRLVALHHVDAPWRPSDLEQRDG 1265

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             IER G     Q      + +     + T D  + Q +  K+ 
Sbjct: 1266 RIERQGNMFYEQDPDGFEIEILRYATKQTYDSRMWQTIEYKAA 1308


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 21/148 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK---------DPCTIQE 103
            K+KAL+ I+E       I+        A L  K    G+++D+             +  
Sbjct: 228 SKLKALQPILELEAPESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYR 287

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + EGKI L+ A       GL+++   + ++ + L  + E +   I RIG  R  +AG   
Sbjct: 288 FREGKIKLVVA-TDIAARGLDVENLSH-VINYDLPDNAETY---IHRIG--RTGRAGKTG 340

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 +     ID  +++++  K   Q
Sbjct: 341 TA----ISLVEPIDRRMIKQIERKLRQQ 364


>gi|156975910|ref|YP_001446817.1| ATP-dependent helicase HepA [Vibrio harveyi ATCC BAA-1116]
 gi|189039519|sp|A7MSB2|RAPA_VIBHB RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|156527504|gb|ABU72590.1| hypothetical protein VIBHAR_03676 [Vibrio harveyi ATCC BAA-1116]
          Length = 969

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 19/144 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----------RLQKAFPQGR 92
           E+  W +        LE + EK +   +++A   ++ L            R         
Sbjct: 482 EDSSWWQFDSRVNWLLEKVKEKRSDKVLVIASRASTALQLEQALREREGIRATVFHEGMS 541

Query: 93  TLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            L++D         EG   +L         G N Q+  N LV F L ++ +  +Q I R+
Sbjct: 542 ILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRL 599

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT 175
                 + G KR + ++    ++T
Sbjct: 600 D-----RIGQKRDIDIHVPYLKDT 618


>gi|119714078|ref|YP_919220.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525987|gb|ABL79357.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 953

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 26/191 (13%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPII 72
           L  +   A    ++  + L  A  A       H     D K+ A+   ++K  A+    I
Sbjct: 433 LTDDETSAGTDTAERRRLLGFARRAADLAGPDH-----DRKLAAVTTQVKKLLADGYSPI 487

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTI-----------QEWNEGKIPLL-----FAHP 116
           V   F      +           ++P  +           +E   G++  L         
Sbjct: 488 VFCRFIDTAHYVAAHLNTALGTKRNPVHVVSVTGELPPAERERRVGELTELDGEHVLVAT 547

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
                G+NLQ   + +V + L W+   H+Q   R+    QR+    RAV +Y     N I
Sbjct: 548 DCLSEGVNLQEHFSAVVHYDLCWNPTRHEQREGRVDRYLQRKE-VVRAVTLYG--EDNGI 604

Query: 177 DELVLQRLRTK 187
           D +VL  L  +
Sbjct: 605 DGIVLDVLIRR 615


>gi|330966945|gb|EGH67205.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 378

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 200 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 259

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 260 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 313

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 314 GQKQDVRV 321


>gi|269968016|ref|ZP_06182054.1| RNA polymerase-associated protein rapA [Vibrio alginolyticus 40B]
 gi|269827373|gb|EEZ81669.1| RNA polymerase-associated protein rapA [Vibrio alginolyticus 40B]
          Length = 969

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRSEKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 576 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|330900195|gb|EGH31614.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 311

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLD----------KDPC 99
           K +AL  +   EKA    ++    +        R+++   Q               +   
Sbjct: 133 KEQALLDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARRED 192

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I +  +  + +L  +P     GL+L      + F    +++   QQ   R       + 
Sbjct: 193 WILDQVDRGVDVLITNPELVKTGLDLLDFP-TIAFMQTGYNVYTVQQAARRSW-----RI 246

Query: 160 GFKRAVFV 167
           G K+ V V
Sbjct: 247 GQKQDVRV 254


>gi|218262439|ref|ZP_03476905.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223369|gb|EEC96019.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
          Length = 436

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 18/145 (12%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLD 95
           +  K    +K++ L  ++ +      ++  ++   + R+           + F  G    
Sbjct: 207 RVVKSPVKDKLETLYKLLGELKGGSALIFCNYRETVERVSDYLTEMGVDNEYFHGGMEQP 266

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    +  +  G   +          GL++    N ++ + L    E +     R     
Sbjct: 267 ERERALSHFRNGSATVF-ISTDLASRGLDIPEVKN-VIHYHLPVSEEAYVHRNGRTARMN 324

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELV 180
                    V    L A+ T+ E +
Sbjct: 325 A------EGVAYLILNAEETVPEYI 343


>gi|34540618|ref|NP_905097.1| hypothetical protein PG0847 [Porphyromonas gingivalis W83]
 gi|34396932|gb|AAQ65996.1| conserved domain protein [Porphyromonas gingivalis W83]
          Length = 526

 Score = 39.2 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 14/130 (10%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            ++  +Q+     +        +   N G I ++F   +  G G+N Q     +      
Sbjct: 83  HEVRFIQEC----KNEKAKKAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHHLDTP 138

Query: 139 WDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           W   + +Q   R         +  A  K  V +Y    + ++D      L  K     L 
Sbjct: 139 WRPSDLEQRNGRAVRKGNMIAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LF 192

Query: 195 LNALKKETIH 204
           +N LK  T+ 
Sbjct: 193 INQLKTNTLG 202


>gi|91225597|ref|ZP_01260671.1| ATP-dependent helicase HepA [Vibrio alginolyticus 12G01]
 gi|91189717|gb|EAS75991.1| ATP-dependent helicase HepA [Vibrio alginolyticus 12G01]
          Length = 969

 Score = 39.2 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRSEKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 576 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|260590916|ref|ZP_05856374.1| putative DNA methylase [Prevotella veroralis F0319]
 gi|260536781|gb|EEX19398.1| putative DNA methylase [Prevotella veroralis F0319]
          Length = 532

 Score = 39.2 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 44/218 (20%)

Query: 9   RELYCDLQGENIEAF-----NSASKTVKCL---------QLANGAVYYDEE----KHWKE 50
           R++  DL+  +  A+     N AS   K L         Q     V+ D        W  
Sbjct: 34  RKMSLDLRMIDENAYSDHIDNKASHCAKLLNDYYQKYDAQKGTQFVFSDLGTYKPGEWNV 93

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
             + K K +E              YH  +   R  +     +        +   N G I 
Sbjct: 94  YSEIKKKLVED-------------YHIPAYEIRFIQECKNEKAKK---AMVDAMNRGDIR 137

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVF 166
           ++F   +  G G+N Q     +      W   + +Q   R         +  A  K  V 
Sbjct: 138 IIFGSTSMLGTGVNAQQRAVAVHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVI 197

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 198 IY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 229


>gi|288802618|ref|ZP_06408056.1| DNA methylase [Prevotella melaninogenica D18]
 gi|288334768|gb|EFC73205.1| DNA methylase [Prevotella melaninogenica D18]
          Length = 2067

 Score = 39.2 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR-- 155
               +   N G I ++F   +  G G+N Q     +      W   + +Q   R       
Sbjct: 1674 KAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHHLDTPWRPSDLEQRNGRAVRMGNV 1733

Query: 156  --QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 1734 IAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 1778


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score = 39.2 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 32/163 (19%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEVHDE--------KIKALEVIIEKANAA 69
           SA+ ++K  +LA    N  V  D   +EK  K + +E        K++ L  +IE+    
Sbjct: 198 SATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIEEDWPE 257

Query: 70  PIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       L                     K    ++++  G++ +L A     
Sbjct: 258 KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             GL++    + +  + L  D E++   + RIG  R  +AG K
Sbjct: 317 ARGLHISDVSH-VYNYDLPDDCEDY---VHRIG--RTGRAGNK 353


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-----FP-----QGRTLDKDPCTI 101
             +K   L   + +     I+V          L++      FP       RT  +    +
Sbjct: 387 PHDKEDYLVRFLNQVQEGLILVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAAL 446

Query: 102 QEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQA 159
             +  G+ P+L A   A+ G  +N   G   ++ F L  +++++   + RIG T R    
Sbjct: 447 NSFRSGRTPVLVATDVAARGLDIN---GVTHVINFDLPNNIDDY---VHRIGRTGRAGNL 500

Query: 160 GF 161
           G 
Sbjct: 501 GH 502


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           K +++A  A   D      +  D K K   L  ++        ++  +   D++ L K+ 
Sbjct: 203 KIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLLRVETVKNAVIFCNRKRDISTLVKSL 262

Query: 89  PQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +            T       + ++ +G++PLL A   +   GL++  G + +  F + 
Sbjct: 263 TKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLIASDVAA-RGLDI-AGLSHVFNFDVP 320

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + E++   + RIG  R  +AG     F    IA    D+  +  + +
Sbjct: 321 MNAEDY---VHRIG--RTGRAGKSGRAFT---IAAGKDDKRYISAIES 360


>gi|256825951|ref|YP_003149911.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689344|gb|ACV07146.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 550

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNE 106
            D K+  L+ I+E       +V   +   L  +           + P        + +  
Sbjct: 391 ADVKLPVLDRIVEHHAGEATLVIGQYLDQLEEIAGRLDCDIITGETPQKERGRLFEAFRS 450

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+I  L          ++L      +     +   +E  Q + R+   +       R   
Sbjct: 451 GEITRLVVS-KVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKS----DGRTAH 505

Query: 167 VYYLIAQNTID 177
            Y ++ ++T+D
Sbjct: 506 FYTVVTRDTVD 516


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
            ++  K   + K   L  +I+  N   ++V         RL +   +           ++
Sbjct: 223 AQRVIKVGRENKKDLLAHLIKSQNWHQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKS 282

Query: 94  LDKDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  + E+  G + +L A   A+ G  +++      ++ + L    E++   + RIG
Sbjct: 283 QGARTKALAEFKTGDLTVLVATDIAARGIDIDMLP---HVINYELPNVPEDY---VHRIG 336

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT--KSTIQDLLLNALKKET 202
            T  R      A+    L+  +  +E  L  +    K +I   ++   + + 
Sbjct: 337 RTG-RAGAQGEALS---LVCVD--EEGFLADIEKLIKRSIAREVVAGFEPDP 382


>gi|221133961|ref|ZP_03560266.1| ATP-dependent helicase HepA [Glaciecola sp. HTCC2999]
          Length = 944

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L   I+K     + V +   S + R           D+      +  E   PLL     
Sbjct: 503 QLAEFIKKLTGQHLPVFHENMSIIER-----------DRAAHYFSD-PENSAPLLLCS-E 549

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + L+ F L    +  +Q I R+      + G  + V ++
Sbjct: 550 IGSEGRNFQFAQH-LILFDLPAHPDLLEQRIGRLD-----RIGQSQTVNIH 594


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTI 101
           +  K++AL+ ++E      +I+     +   RL ++          L+ D        TI
Sbjct: 275 NSFKLEALKRVLETTADEGVIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTI 334

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +   +G I +L A       GL+++  G +++ + + +D E +   + RIG T R  + G
Sbjct: 335 ERLRQGGIDILVA-TDVAARGLDVERIG-LVINYDMPFDSEAY---VHRIGRTGRAGRTG 389

Query: 161 F 161
            
Sbjct: 390 E 390


>gi|331003297|ref|ZP_08326801.1| hypothetical protein HMPREF0491_01663 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412646|gb|EGG92030.1| hypothetical protein HMPREF0491_01663 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 539

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI----------- 101
           D K + LE IIEK     I+V  H      R+    P  RTL      +           
Sbjct: 225 DTKDEQLEKIIEKHKGEKILVFAH------RVYGKHPTTRTLYDKYKDVYEGVAYFDSKA 278

Query: 102 ---------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                    + +  G I ++FA  ++ G G+++     ++V + +   +E++ Q + R G
Sbjct: 279 DDKYKVQVLKSFQNGDIKIVFA-TSAFGMGVDIPD-VRVVVNYLISETVEQYYQEVGRGG 336

Query: 153 VTRQRQAG 160
              ++  G
Sbjct: 337 RDGEQAYG 344


>gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis
            DSM 14884]
 gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis
            DSM 14884]
          Length = 1673

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 54   EKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPC 99
            +K+  L  I+E    +     +IV         RL  A  +   + +             
Sbjct: 1195 QKLAKLTQILEWIDGQEPGGSVIVYVATRRMAERLAWALRRLGFVSEAYHAGLSDVIRAE 1254

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + EG+ P++ A   + G G++ +     ++ F     LE + Q   R G  R
Sbjct: 1255 VQGRFEEGETPIVVA-TNAFGMGID-KSNVRAVIHFDPPQSLEAYLQESGRAGRDR 1308


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 69/175 (39%), Gaps = 34/175 (19%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           +K +AL  +++       I+       +  L +A  +            + ++    +++
Sbjct: 207 QKFEALSRLLDMEAPELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRK 266

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G I +L A       GL++  G + ++ F L  D E +   + RIG  R  +AG + 
Sbjct: 267 FRDGSIDVLVA-TDVAARGLDV-SGVSHVINFDLPQDPESY---VHRIG--RTGRAGKEG 319

Query: 164 AVFVY-------YL-----IAQNTIDEL----VLQRLRTKST-IQDLLLNALKKE 201
             + +       +L     + ++ I       + + +  K     + +L  ++K+
Sbjct: 320 TAWTFVTPREIDHLHFIEKVTRHKISRKPLPSLAEAMEGKQKMTAERILELMEKD 374


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
           AN  V    E     + D+++ AL     K     ++V   +  +  RL     +     
Sbjct: 332 ANHDVMQIVEVLDDHLRDKRLLALLEKYHKTQRNRVLVFALYQKEAERLDGMLHRSGWNV 391

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +  ++    +  + +G  PL+ A       GL++     +++ +S     E++ 
Sbjct: 392 VSIHGNKAQEQRTKALSLFKKGSCPLMVA-TDVAARGLDVPD-VEVVINYSFPLTTEDY- 448

Query: 146 QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + RIG T R  + G     F ++   +    ELV         + D LL
Sbjct: 449 --VHRIGRTGRAGKKGVAHTFFTHH--NKGLAGELVNVLREAGQVVPDALL 495


>gi|189200787|ref|XP_001936730.1| ATP-dependent DNA helicase hus2/rqh1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983829|gb|EDU49317.1| ATP-dependent DNA helicase hus2/rqh1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1420

 Score = 39.2 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 22/178 (12%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQ 90
           C Q +      +            I ++  +I EK      I+         ++ +   +
Sbjct: 709 CRQYSQSFNRPNLSYEVLPKGRGVIDSIADLIKEKYTGKSGIIYCLSRKTCEQVAQKLSE 768

Query: 91  GRTLD----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                                ++W + +  ++ A  A  G G++ +     ++  SL   
Sbjct: 769 TGIRAYHYHAGMDSADRSDVQRKWQKNEYHVIVATIA-FGMGID-KADVRYVIHHSLPKS 826

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ----RLRTKSTIQDLL 194
           LE + Q        R  + G +   ++YYL A + I   ++         K  + D+L
Sbjct: 827 LEGYYQ-----ETGRAGRDGKRSECYLYYLYADSRILRKMIDEGEGSREQKQRLNDML 879


>gi|307565513|ref|ZP_07627995.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345782|gb|EFN91137.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 491

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 64  KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 120

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 121 RAVAVHHLDTPWRPSDLEQRNGRAVRKGNLIAKGFADNKVDVIIY--AVERSLDSYKFNL 178

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 179 LHNKQ----LFINQLKTNTLG 195


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD------PCTIQ 102
             K++AL+ +++      +I+              L+ A  Q   L+ D        T++
Sbjct: 281 SHKLEALQRVLDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVE 340

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
               G + +L A       GL+++  G +++ + + +D E +   + RIG T R  + G 
Sbjct: 341 RLRSGSVDILVA-TDVAARGLDVERIG-LVINYDMPFDSEAY---VHRIGRTGRAGRTGE 395


>gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 422

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 21/144 (14%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE 103
            K+KAL+ I+E  +    I+          L     +               +    +Q 
Sbjct: 228 SKLKALQPILEIEDPESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQR 287

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + EGKI L+ A       GL+++   + ++ F L  + E +   I RIG  R  +AG  +
Sbjct: 288 FREGKIKLVVA-TDIAARGLDVEDLSH-VINFDLPDNTETY---IHRIG--RTGRAG--K 338

Query: 164 AVFVYYLIAQNTIDELVLQRLRTK 187
                 LI    ID  +L+++  +
Sbjct: 339 TGTAISLI--EPIDRRMLRQIEHR 360


>gi|222476086|ref|YP_002564607.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454457|gb|ACM58721.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------QGRTLDKDPCT 100
                 ++K+  L+ +I++ +    I+    N     + + F       Q +T D+    
Sbjct: 324 RIARTAEKKLDTLDNLIKRHHDDRAIIFTANNDFAYDISQEFIVPCITHQTKT-DERTEI 382

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ +  G+  +L         G+++    N+ +  S      ++ Q + RI      +  
Sbjct: 383 LERFRTGEYSMLVTS-QVLDEGIDV-PAANVGIILSGSASKRQYAQRLGRILRPTDDR-- 438

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRT 186
             +   +Y +I   T++  V QR R 
Sbjct: 439 --QPARLYEIITDETMETYVSQRRRE 462


>gi|116194552|ref|XP_001223088.1| hypothetical protein CHGG_03874 [Chaetomium globosum CBS 148.51]
 gi|88179787|gb|EAQ87255.1| hypothetical protein CHGG_03874 [Chaetomium globosum CBS 148.51]
          Length = 143

 Score = 39.2 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              N +      W+    +Q I         + G  RAV +   + +N+++E
Sbjct: 95  SAANYVHIVEPQWNPSVEEQAIA-----GAVRMGQTRAVTIIRYVVKNSVEE 141


>gi|325661836|ref|ZP_08150457.1| hypothetical protein HMPREF0490_01193 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471814|gb|EGC75031.1| hypothetical protein HMPREF0490_01193 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1122

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 19/153 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
           V  D + +        +  +  + E+     I++  ++       +K             
Sbjct: 559 VIDDPDYYLDFYSTRLLTVINAVYEELFDQKIVLFTNYKGTFDAYRKILEGIFSKEEVSF 618

Query: 91  -GRTLDKDPCTI---QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            G  + KD   +   +  N+    ++     + G G N Q   + +V   L WD    +Q
Sbjct: 619 FGAGMSKDEIELNAYRFQNDRSCRIMLCDY-TGGEGRNFQC-ADYIVHIDLPWDANMIEQ 676

Query: 147 MIERIGV-TRQRQAGFKRAVFVYYLIAQNTIDE 178
            I R+    R        +V +Y L    T +E
Sbjct: 677 RIGRLDRLERDPSRPIVHSVVIYTL---ETFEE 706


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD------PCTIQE 103
            K++AL+ +++      +I+     +        L+    Q   L+ D        T++ 
Sbjct: 282 HKLEALQRVLDACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVER 341

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
              G + +L A       GL+++  G +++ + + +D E +   + RIG T R  + G 
Sbjct: 342 LRSGSVDILVA-TDVAARGLDVERIG-LVINYDMPFDSEAY---VHRIGRTGRAGRTGE 395


>gi|194468573|ref|ZP_03074557.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454937|gb|EDX43776.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 421

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1]
 gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 489

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 317 NVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAA 376

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 377 QLSGDVPQHKRIRTLESFREGRITVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 432

Query: 147 MIERIGVTRQRQAG 160
            + RIG  R  +AG
Sbjct: 433 -VHRIG--RTGRAG 443


>gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 421

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 51/156 (32%), Gaps = 33/156 (21%)

Query: 65  KANAAPIIVAYHFNSDLARL----QKAFPQGRTL-------------------DKDPCTI 101
             + + +++   +  ++  +     +  P  R +                    +    I
Sbjct: 405 SLSKSRVMIFSQYRDNVDEIVTKLNQHHPFLRVMSFIGQSSSKSGKKGKGFTQKEQLEVI 464

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++  G   +     +    GL++    +++V +          Q + R G  RQ +   
Sbjct: 465 SKFQSGNYNV-LVSTSIGEEGLDIGD-VDLIVCYDAQTSPVRMLQRMGRTGRKRQGRI-- 520

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V +   +++   +E+  +      +IQ  +++ 
Sbjct: 521 ---VVI---LSKGKEEEIHRKAQAQYKSIQRAIMDG 550


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score = 39.2 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  I+++  +   +V          +     Q     
Sbjct: 506 VGGACSDVEQMVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPS 565

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    ++++  G+ P++ A  +    GL+++   + ++ F +  D++E+ 
Sbjct: 566 TSIHGDREQKERETALRDFRTGQCPVIVA-TSVAARGLDIEN-VSYVINFDIPDDIDEYV 623

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 624 HRIGRTGRCG 633


>gi|328908278|gb|EGG28037.1| DEAD/DEAH box helicase [Propionibacterium sp. P08]
          Length = 580

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    RE+         + +E   S S++ +   +       D           K + 
Sbjct: 376 KRYDAPWREIEAQGWIAPADCVEVRVSLSESDR---MTCAMAEPDVRYRMAATLPIKNRV 432

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLF 113
           +  ++E+    P ++   +   L  L             T  +   T Q++ EG++ LL 
Sbjct: 433 VRDLVERHRGQPTLIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFREGRVDLLV 492

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   +            Y ++++
Sbjct: 493 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSR 546

Query: 174 NTID 177
           +T+D
Sbjct: 547 DTVD 550


>gi|307596489|ref|YP_003902806.1| helicase domain-containing protein [Vulcanisaeta distributa DSM
            14429]
 gi|307551690|gb|ADN51755.1| helicase domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 1035

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
            ++   +   KI   + I+  E    + IIV   F      L K   +           +T
Sbjct: 857  RNIASMASAKIGIAKEIVKAEVGIGSKIIVFTQFIRQAEELYKVLKEELGPIVALITSKT 916

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             D+D    + +  G   ++ A       G+++      ++           +QMI+R+G 
Sbjct: 917  SDRDS-IFKAFARGVYKVIVA-TTVLDEGIDVPDADVAIILSG----TGSQRQMIQRVGR 970

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-----QDLLLNALKKETIHV 205
              +   G   A  VY +I +NTI+E + +    K  +     +  L + +++   HV
Sbjct: 971  VVRASDGKVEA-RVYEVITRNTIEEALSEERHVKGEVLEVECRRYLADEVRRLISHV 1026


>gi|317132847|ref|YP_004092161.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470826|gb|ADU27430.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
          Length = 2462

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEW 104
            D ++ AL+    +A+A      Y    D   + +  P G         T  K      + 
Sbjct: 2038 DTELHALQDATPEADAPEAFSVYSDIRD-KLIARGVPAGEIAFIHDADTEVKKKELFAKV 2096

Query: 105  NEGKIPLLFAHPASCGHGLNLQY---GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              G++ +L    A  G G+N+Q      + L      W   + +Q   RI     RQ   
Sbjct: 2097 RAGQVRVLMGSTAKMGAGMNVQDLLIASHDL---DCPWRPGDLEQRSGRII----RQYNT 2149

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 ++  + + T D  + Q +  K      ++ +
Sbjct: 2150 NPEGHIFRYVTEGTFDSYLWQTVENKQKFISQIMTS 2185


>gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 433

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           ++ K+  L+ +IE+      I+  +       +                     K    +
Sbjct: 240 NEHKMSLLQTLIEEEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G++ LL A       GL++    + +  F L  D E++   + RIG T R   +G
Sbjct: 300 EQFTKGEVDLLVA-TDVAARGLHIPQVTH-VFNFDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|260753609|ref|YP_003226502.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552972|gb|ACV75918.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 894

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV-----------TRQRQA 159
           +L A       GLNL      ++     W+    +Q I R+              R    
Sbjct: 760 VLLAQSRVGREGLNLHEACRTVILLHAEWNPGIVEQQIGRVDRKNSLWLREWRKWRDHGD 819

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G    + V+ ++   T D+   Q L+ +
Sbjct: 820 GLPPRIRVHPVVVSGTYDDHNWQVLKAR 847


>gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|257067732|ref|YP_003153987.1| helicase family protein [Brachybacterium faecium DSM 4810]
 gi|256558550|gb|ACU84397.1| helicase family protein [Brachybacterium faecium DSM 4810]
          Length = 1071

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 65  KANAAPIIVAYH--FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +++ + I VA H   +   AR  +         ++      +N    P + A  +    G
Sbjct: 867 RSDGSAIEVATHKLNSHIAARFGRTLSSEEAEKREASVRDSFNSPFWPFVLASTSVGQEG 926

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           L+     + +V ++L  +  + +Q   R+   +    
Sbjct: 927 LDFHTYSHAIVHWNLPGNPVDLEQREGRVHRYKGHAI 963


>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
          Length = 395

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 19/143 (13%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
           GA   D E+ + +V    K + L  +++       +V          +     Q      
Sbjct: 181 GAACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTT 240

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    + ++  GK P++ A  +    GL++    + +V F L  +++E+  
Sbjct: 241 SIHGDREQREREQALADFRSGKCPVMVA-TSVAARGLDIPDVQH-VVNFDLPKEIDEY-- 296

Query: 147 MIERIGVTRQRQAGFK-RAVFVY 168
            + RIG  R  + G   RAV  Y
Sbjct: 297 -VHRIG--RTGRCGNTGRAVSFY 316


>gi|282878601|ref|ZP_06287377.1| conserved domain protein [Prevotella buccalis ATCC 35310]
 gi|281299272|gb|EFA91665.1| conserved domain protein [Prevotella buccalis ATCC 35310]
          Length = 506

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 64  KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 120

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 121 RAVAVHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNL 178

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 179 LHNKQ----LFINQLKTNTLG 195


>gi|255588846|ref|XP_002534737.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223524658|gb|EEF27647.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1167

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 45/189 (23%)

Query: 46  KHWKEVHDEKIKALEVIIEKA-------NAAPIIVA--YHFNSD-LARLQKAFPQGRTL- 94
           +  K   D K KA+   +          N   +I+   Y      +  +  +   G    
Sbjct: 414 QTAKNQADAKAKAILDWLTANLKTDGQWNDRRVILFTEYRTTHQWMHEILASHDFGGDRL 473

Query: 95  ---------DKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    D+       +     +  + +L A  A+   G++LQ   N L+   + ++ 
Sbjct: 474 AILHGGMAQDEREKVKAAFQTSPKDSAVRILLATDAAS-EGIDLQNHCNCLIHLEIPYNP 532

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLI-----AQNTI---DELVLQRLRTKSTIQDL 193
              +Q   RI    QRQ    + V +++ +      ++TI    + +++ LR        
Sbjct: 533 NVMEQRNGRIDRHGQRQ----KEVLIWHPVDGGEQGKSTIGGHGDDIIRALRK------- 581

Query: 194 LLNALKKET 202
            L +++ + 
Sbjct: 582 -LESMRADM 589


>gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
 gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD--- 97
           +++ + +H  K+ A+  ++E  N   IIV      +   +         Q   ++ D   
Sbjct: 350 QRYMQVMHSHKLDAMTRVLEVENYDGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQ 409

Query: 98  ---PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                T+    +G+I +L A       GL+++   +++V + +  D E +   + RIG  
Sbjct: 410 QLRERTVDALRDGRIDILVA-TDVAARGLDVER-ISLVVNYDIPHDTESY---VHRIG-- 462

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           R  +AG      ++      T  E  + R   K+T Q 
Sbjct: 463 RTGRAGRDGEAILFV-----TPREKYMLRQIEKATRQK 495


>gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|110598199|ref|ZP_01386476.1| Helicase-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340213|gb|EAT58711.1| Helicase-like [Chlorobium ferrooxidans DSM 13031]
          Length = 943

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 49/245 (20%)

Query: 2   KQYHKFQRELYCD---------LQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKH 47
           ++  + +REL+ +         L  EN         N+   + +   L+   V  ++   
Sbjct: 404 RKLDQDERELFAEQEKNPLIETLSDENDTGNTELLDNAELNSNEISALSLLCVKAEQLSG 463

Query: 48  WKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI----- 101
            +     K +A+E I          IV   + +    +      G     D   +     
Sbjct: 464 IEHDWKAK-QAIEFIKTWLKEGFNPIVFCRYIATANYIGALLKNGLPESVDVQVVTSELA 522

Query: 102 QEWNEGKIPLLFAHPASC-------GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            E    KI L+                G+NLQ     ++ + L W+    +Q   R+   
Sbjct: 523 DEQRREKINLMADSTQRVMVATDCLSEGINLQQLFTAVLHYDLPWNPNRIEQREGRVD-- 580

Query: 155 RQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTK-STIQD-------------LLLNAL 198
              + G +  +    L+    N ID +VL  L  K   IQ               +++A+
Sbjct: 581 ---RFGQQAKLVKTLLLWGDDNPIDRIVLNILIRKVRDIQKTTGVSISLGDDTTSIMDAV 637

Query: 199 KKETI 203
            ++ +
Sbjct: 638 IRDVL 642


>gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|313887008|ref|ZP_07820708.1| putative ribosomal subunit interface protein [Porphyromonas
            asaccharolytica PR426713P-I]
 gi|312923534|gb|EFR34343.1| putative ribosomal subunit interface protein [Porphyromonas
            asaccharolytica PR426713P-I]
          Length = 2056

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 67/219 (30%), Gaps = 40/219 (18%)

Query: 5    HKFQREL-YCDLQGENIEAFNSASKTVKCL---------QLANGAVYYDEE----KHWKE 50
             K   ++   DL+  +    N AS   K L         Q     V+ D        W  
Sbjct: 1543 RKMSLDMRMIDLEKYSDHIDNKASHCAKLLNNYYQKYNEQKGTQFVFSDLGTYKSGEWNV 1602

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
              + K K +E              YH  S   R  +     R        ++  N G I 
Sbjct: 1603 YSEIKRKLVEE-------------YHIPSHEIRFIQECKNERAKK---AMVEAMNRGDIR 1646

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVF 166
            ++F   +  G G+N Q     +      W   + +Q   R         +  A  K  V 
Sbjct: 1647 IIFGSTSMLGTGVNAQQRAVAIHHLDTPWRPSDLEQRNGRAIRKGNLVAKEFADNKVDVI 1706

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +Y    + ++D      L  K     L +N LK   + +
Sbjct: 1707 IY--AVERSLDSYKFNLLHNKQ----LFINQLKSNQLGM 1739


>gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score = 38.8 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 21/157 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT-- 100
            K    +K +AL  +++       ++  +  + +  L K+     +  G           
Sbjct: 222 VKVDARKKREALRALLDGQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASR 281

Query: 101 ---IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ + +G + +L A   +   GL++  G + +  F   W  +++   + RIG  R  
Sbjct: 282 IAELERFRDGTVNILVASDVAA-RGLDI-KGVSHVFNFDAPWHPDDY---VHRIG--RTG 334

Query: 158 QAGFKRAVFVYYLIAQNTID--ELVLQRLRTKSTIQD 192
           +AG K     Y  + ++  +  + + + + TK    D
Sbjct: 335 RAGAKG--VAYTFVTKDDAEAIDNIQKLIGTKIDYAD 369


>gi|261879784|ref|ZP_06006211.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333544|gb|EFA44330.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 2069

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR-- 155
               +   N G I ++F   +  G G+N Q     +      W   + +Q   R       
Sbjct: 1662 KAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHHLDTPWRPSDLEQRNGRAIRKGNL 1721

Query: 156  --QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 1722 VAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 1766


>gi|242316276|ref|ZP_04815292.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           1106b]
 gi|242139515|gb|EES25917.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           1106b]
          Length = 1064

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI------ 171
           +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +++ +      
Sbjct: 606 AASEGIDLQNHCNRLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWHPVDGGGAN 661

Query: 172 --AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             +   + E +L+ LR         L++++ + 
Sbjct: 662 GASVGGLGEDILRALRK--------LDSMRADM 686


>gi|213051685|ref|ZP_03344563.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213423865|ref|ZP_03356845.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425879|ref|ZP_03358629.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289825740|ref|ZP_06544908.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 361

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 138 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 197

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 198 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 256

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 257 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 296


>gi|302346773|ref|YP_003815071.1| helicase C-terminal domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302151224|gb|ADK97485.1| helicase C-terminal domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 55/180 (30%), Gaps = 26/180 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
           T K  Q     +   +   W    + K K +E              YH  S   R  +  
Sbjct: 37  TQKGTQFVFSDLGTYKPGEWNVYSEIKRKLVED-------------YHIPSYEIRFIQEC 83

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +        +   N G I ++F   +  G G+N Q     +      W   + +Q  
Sbjct: 84  KNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAVHHLDTPWRPSDLEQRN 140

Query: 149 ERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R         +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 141 GRAVRKGNLIAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 194


>gi|198244929|ref|YP_002217852.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226739544|sp|B5FN74|RHLB_SALDC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197939445|gb|ACH76778.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625639|gb|EGE31984.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 421

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 356


>gi|126661053|ref|ZP_01732137.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
 gi|126617664|gb|EAZ88449.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
          Length = 486

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      D K++ L  +I + +   I++  + N+ + R+ + F       + P     
Sbjct: 312 EAKEIAAGTDGKLRVLTELICEHHQDSILIFTNDNATVYRISEEFLIPAITHQTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN-----ILVFFSLWWDLEEHQQMIERIGV 153
             +  + EG    L        H LN   G +     + +  S      E+ Q   R+G 
Sbjct: 372 DILSRFREGIYKSLVTS-----HVLN--EGVDVPDVKVAIILSGTSSAREYVQ---RLGR 421

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++     +   +Y ++A++T +E      R K T 
Sbjct: 422 ILRKGTELNKLATLYEIVAEDTSEER--TSQRRKETT 456


>gi|190015965|ref|YP_001965173.1| putative helicase [Rhodococcus sp. NS1]
 gi|114796805|gb|ABI79398.1| putative helicase [Rhodococcus sp. NS1]
          Length = 1102

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 30/135 (22%)

Query: 71  IIVAYHFNSDLARLQKAFP-------------QGRTLD---------KDPCTIQEWNEGK 108
           ++V   +   +  +++                 G+T D               + +    
Sbjct: 785 VVVFTQYTDTMDYIRERLIAAGITRIGCYSGRGGQTYDPATISWQEVSKAEIKERFRNRD 844

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFV 167
           + +      S   GLNLQ  G  L+ + + W+L   +Q I R+      + G     + V
Sbjct: 845 LTV-LIGTDSMSEGLNLQTCG-RLINYDMPWNLMRVEQRIGRVD-----RIGASYEHIQV 897

Query: 168 YYLIAQNTIDELVLQ 182
                 +T+++ V +
Sbjct: 898 TNYFYADTVEQRVYE 912


>gi|325205663|gb|ADZ01116.1| sensor histidine kinase [Neisseria meningitidis M04-240196]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANIAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTERETIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|325144838|gb|EGC67126.1| sensor histidine kinase [Neisseria meningitidis M01-240013]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANIAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTERETIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|325134718|gb|EGC57357.1| sensor histidine kinase [Neisseria meningitidis M13399]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANIAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTERETIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|299141757|ref|ZP_07034892.1| DNA methylase [Prevotella oris C735]
 gi|298576608|gb|EFI48479.1| DNA methylase [Prevotella oris C735]
          Length = 513

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR-- 155
              +   N G I ++F   +  G G+N Q     +      W   + +Q   R       
Sbjct: 120 KAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHHLDTPWRPSDLEQRNGRAVRMGNV 179

Query: 156 --QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 180 IAKEFADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 224


>gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
 gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
          Length = 436

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ +IE+      I+  +      +L                     K    +
Sbjct: 240 NEHKMALLQTLIEEEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|307151422|ref|YP_003886806.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822]
 gi|306981650|gb|ADN13531.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822]
          Length = 502

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----- 98
           E K      D K++ L  +I +     +++  + N+ + R+ + F       + P     
Sbjct: 312 EAKEIASGTDGKLRVLAELIAQHYPESLLIFTNDNATVYRISQEFLIPAITHQTPVKERH 371

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  + EG+   L         G+++     + +  S      E+ Q   R+G   ++ 
Sbjct: 372 EILNLFREGQYKTLVTS-HVLNEGVDVPD-ARVAIILSGTGSAREYVQ---RLGRVLRKG 426

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +   +Y ++A++T +E   QR R 
Sbjct: 427 KQPDKLAILYEVVAEDTSEERTSQRRRG 454


>gi|11121449|emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
          Length = 1182

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            RLQ+   +           Q       W++ +I ++ A  A  G G+N +     ++  
Sbjct: 685 ERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA-FGMGIN-KPDVRFVIHH 742

Query: 136 SLWWDLEEHQQMIERIGVTRQRQA-----GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           SL   +E + Q   R G   QR +     G+   + V ++I+Q  +D+  +     +   
Sbjct: 743 SLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVAS 802

Query: 191 QDLLLN 196
              LL 
Sbjct: 803 SGRLLE 808


>gi|30681987|ref|NP_172562.2| RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic
           acid binding [Arabidopsis thaliana]
 gi|75329797|sp|Q8L840|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName:
           Full=RecQ-like protein 4A; Short=AtRecQ4A;
           Short=AtRecQl4A; AltName: Full=SGS1-like protein;
           Short=AtSGS1
 gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
 gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana]
 gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
          Length = 1188

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            RLQ+   +           Q       W++ +I ++ A  A  G G+N +     ++  
Sbjct: 691 ERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA-FGMGIN-KPDVRFVIHH 748

Query: 136 SLWWDLEEHQQMIERIGVTRQRQA-----GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           SL   +E + Q   R G   QR +     G+   + V ++I+Q  +D+  +     +   
Sbjct: 749 SLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVAS 808

Query: 191 QDLLLN 196
              LL 
Sbjct: 809 SGRLLE 814


>gi|167945982|ref|ZP_02533056.1| ATP-dependent RNA helicase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 398

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 38/181 (20%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TL 94
           +++W+     K+ AL  I+E  +   ++V          L +                  
Sbjct: 50  QRYWQVSGLHKLDALTRILECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQ 109

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +   T++ +  G++ +L A       GL+++   + ++ + + +D E +   + RIG T
Sbjct: 110 KQRERTVERFKAGRLDILVA-TDVAARGLDVERISH-VINYDIPYDTESY---VHRIGRT 164

Query: 155 -RQRQAG--------------------FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R  + G                     ++ +    + +   I+E   +  R K  I D 
Sbjct: 165 GRAGRTGDAILFVSPKERRLLRTIERATRQPIERMQMPSAGDINEK--RMQRFKDRISDA 222

Query: 194 L 194
           L
Sbjct: 223 L 223


>gi|126452260|ref|YP_001067911.1| SNF2-related:helicase, C-terminal [Burkholderia pseudomallei 1106a]
 gi|126225902|gb|ABN89442.1| SNF2-related:Helicase, C-terminal [Burkholderia pseudomallei 1106a]
          Length = 1045

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI------ 171
           +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +++ +      
Sbjct: 587 AASEGIDLQNHCNRLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWHPVDGGGAN 642

Query: 172 --AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             +   + E +L+ LR         L++++ + 
Sbjct: 643 GASVGGLGEDILRALRK--------LDSMRADM 667


>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
 gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
          Length = 821

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
            ++ +  +  + +       + +    E++    +    I+   F    +R +    +G 
Sbjct: 351 RKIVSEQLKKNPDSRVIVFTNYR-DTAEIVANALSGFSGIIPIRFVGQGSRNKN---KGL 406

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  +    + ++  G+  +L A  +    GL++    ++++F+          Q   R G
Sbjct: 407 TQKQQAEILDKFRAGEYNVLVA-TSVAEEGLDI-PATDMVLFYEPIPSEIRSIQRKGRTG 464

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                    K  V V  L+ + T DE      + K  
Sbjct: 465 R------QQKGRVIV--LVTKGTRDEAYYWSSKNKEK 493


>gi|71017581|ref|XP_759021.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
 gi|46098743|gb|EAK83976.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
          Length = 1291

 Score = 38.8 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 19/184 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKI-KALEVIIEKANAAPIIVAYHFNSD-----L 81
           K    LQL++     + E   ++    K+   +   I  ++     + Y F+ +      
Sbjct: 598 KMRNVLQLSSSFNRPNLEYQVRKKPKSKLIDEIASFILTSHKDECGIVYCFSRESCETVA 657

Query: 82  ARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             L+K              D      Q W  G+  ++ A  A  G G++ +     ++  
Sbjct: 658 DDLKKHGITAHHYHAKLGKDDRSKVQQRWKNGEYKVIVATIA-FGMGID-KPDVRFVIHH 715

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           SL   LE + Q        R  + G      +YY        E ++          D  +
Sbjct: 716 SLPKSLEGYYQ-----ETGRAGRDGLDSVCILYYSWTDVRRMENMMLSEEKSQEAIDRSI 770

Query: 196 NALK 199
           ++L+
Sbjct: 771 DSLR 774


>gi|313677313|ref|YP_004055309.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312944011|gb|ADR23201.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 437

 Score = 38.8 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLD 95
           K  K    +K++ L  +++K    P I+  +F   + R+ +           F  G    
Sbjct: 207 KIIKSPEKDKLETLGQLVQKLEGQPGIIFCNFKDSIERVSEHLGGLKIPHGCFYGGLEQK 266

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + ++  G   LL A       GL++      ++ + L    EE      R    R
Sbjct: 267 DRERALIKFRNGSYHLLLA-TDLAARGLDIPE-IKFIIHYHLPIKAEEFTHRNGR--TAR 322

Query: 156 QRQAG 160
             QAG
Sbjct: 323 MHQAG 327


>gi|242237660|ref|YP_002985841.1| ATP-dependent RNA helicase RhlB [Dickeya dadantii Ech703]
 gi|242129717|gb|ACS84019.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 428

 Score = 38.8 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             IV  +       +                     K    ++E+  G + +L A     
Sbjct: 258 RCIVFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTHGNLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             GL++      +  + L  D E++   + RIG  R  +AG
Sbjct: 317 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIG--RTGRAG 351


>gi|241664254|ref|YP_002982614.1| helicase domain-containing protein [Ralstonia pickettii 12D]
 gi|240866281|gb|ACS63942.1| helicase domain protein [Ralstonia pickettii 12D]
          Length = 949

 Score = 38.8 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQ-NTIDEL 179
           G+NLQ     +V + L W+   H+Q   R+      + G K R V    L  Q N +D  
Sbjct: 547 GINLQNLFTAVVHYDLSWNPTRHEQREGRVD-----RFGQKAREVRTTLLYGQDNPVDGA 601

Query: 180 VLQRLRTKSTI 190
           VLQ +  K+  
Sbjct: 602 VLQVILRKAES 612


>gi|75907174|ref|YP_321470.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75700899|gb|ABA20575.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 517

 Score = 38.8 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 20/153 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVA-------YHFNSDLARLQKAFPQGRTLDK 96
           E K      D K++ L  ++ K     +++        Y  + DL  L  A      + +
Sbjct: 312 EAKEIALGTDSKLRVLANLLTKHYPERVLIFTADNATVYKISQDL--LIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNL---QYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + ++ EG+   L A      H LN        +I +  S      E+ Q + RI  
Sbjct: 370 RHEILTKFREGEYNTLVAS-----HVLNEGVDVPAASIAIILSGTGSTREYIQRLGRI-- 422

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            R+      +   +Y +IA++T +E    R R 
Sbjct: 423 LRKGNI-QNKQAILYEVIAEDTSEENTSARRRG 454


>gi|325204577|gb|ADZ00031.1| sensor histidine kinase [Neisseria meningitidis M01-240355]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANLAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTERETIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|325128663|gb|EGC51531.1| sensor histidine kinase [Neisseria meningitidis N1568]
          Length = 505

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANLAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTEREAIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|309378368|emb|CBX23014.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 530

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 42/179 (23%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             I+A   + K     QL   A    E ++           L   +E   A P      F
Sbjct: 299 SEIQAEALSVKLAALGQLT--ANLAHEIRNPMSAIRHANDLLRENMEAGAADP------F 350

Query: 78  NSDLA--------RLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLLFAHPASCGH- 121
           N+ L         R+ K      +L+K   T       I  W E K   L  HP + G  
Sbjct: 351 NAKLCKIIDGNVCRIDKMLEDISSLNKRNKTERETIGLIPFWEEFKQEFLLGHPDAAGCI 410

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------------QAGFKRAVFV 167
            L++Q G ++  +F         +Q++  +     R             +   K  V +
Sbjct: 411 RLDMQ-GNHLTAYFDP----AHLRQIMWNLANNAWRHSRKQPGSISVTIRPAQKNTVCI 464


>gi|309792538|ref|ZP_07687001.1| ATP-dependent DNA helicase RecQ [Oscillochloris trichoides DG6]
 gi|308225441|gb|EFO79206.1| ATP-dependent DNA helicase RecQ [Oscillochloris trichoides DG6]
          Length = 910

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEW 104
           +EK +AL  +  + N  PIIV          L +               +     T + +
Sbjct: 455 EEKQQALISLCREING-PIIVYARARQACEELAEVLRGVGIAADYYHAQVADRATTQERF 513

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNI--LVFFSLWWDLEEHQQMIERIGVTRQ 156
             G+  +L A  A  G G+      +I  ++ ++L   +E + Q   R G   Q
Sbjct: 514 MRGETRVLVATVA-FGMGI---DKADIRAIIHYNLPQSVEAYYQEAGRAGRDGQ 563


>gi|288926524|ref|ZP_06420443.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
 gi|288336736|gb|EFC75103.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
          Length = 846

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              ++  YH  S   R  +     +        +   N G I ++F   +  G G+N Q 
Sbjct: 415 KRKLVEDYHIPSYEIRFIQECKNEKAKK---AMVDAMNRGDIRIIFGSTSMLGTGVNAQQ 471

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               +      W   + +Q   R         +  A  K  V +Y    + ++D      
Sbjct: 472 RAVAVHHLDTPWRPSDLEQRNGRAVRKGNLIAKEFANNKVDVIIY--AVERSLDSYKFNL 529

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           L  K     L +N LK  T+ 
Sbjct: 530 LHNKQ----LFINQLKTNTLG 546


>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 599

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
           ++ L  +I K      IV  +    +  + +     +            ++       + 
Sbjct: 216 LEQLIKLISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQ 275

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              I ++ A  A  G G+N +     +V F L   +E + Q   R G  
Sbjct: 276 RDDIQIVVATIA-FGMGIN-KSNVRFVVHFDLPRSIESYYQETGRAGRD 322


>gi|240142783|ref|YP_002967296.1| Helicase domain protein [Methylobacterium extorquens AM1]
 gi|240012730|gb|ACS43955.1| Helicase domain protein [Methylobacterium extorquens AM1]
          Length = 919

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL--ARLQKAFPQGRTLDKDPCTIQEWNEGKI---- 109
           IK L+ +I       +   Y   ++   A L+KAFP           + +    ++    
Sbjct: 449 IKELKPLIAAGANPVVFCRYIATAEYVAAALRKAFPGLAVESVTGLLVPDDRRDRVEGMA 508

Query: 110 ---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                L         G+NLQ   + +V + L W+   HQQ   R+      + G    + 
Sbjct: 509 EEPQRLLVATDCLSEGINLQMLFDAVVHYDLSWNPTRHQQREGRVD-----RFGQPAPLV 563

Query: 167 VYYLI--AQNTIDELVLQRLRTKST 189
              L+  + + ID  VL  +  K+ 
Sbjct: 564 KSMLLFGSDSLIDSAVLSVILRKAE 588


>gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
 gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
          Length = 483

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 18/141 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 311 NVASETVEQHVYAVAGSDKYKLLYNLVTQNRWERVMVFANRKDEVRRIEEKLVRDGINAA 370

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 371 QLSGDVPQHKRIRTLENFREGRITVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 426

Query: 147 MIERIGVTRQRQAGFKRAVFV 167
            + RIG  R  +AG    V +
Sbjct: 427 -VHRIG--RTGRAG-TNGVSI 443


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 32/175 (18%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIK 57
           C    E +    SA+ + K  +LA    N   Y +   E+K    +        +++KI 
Sbjct: 184 CPSPQERLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIP 243

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
            L  ++E+      IV  +       +                     K    ++++ +G
Sbjct: 244 LLLTLMEEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDG 303

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +L A       GL++    + +  F L  D E++   + RIG  R  +AG  
Sbjct: 304 ELDILVA-TDVAARGLHISDVTH-VFNFDLPDDREDY---VHRIG--RTGRAGES 351


>gi|116071951|ref|ZP_01469219.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116065574|gb|EAU71332.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 1029

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 28/153 (18%)

Query: 8   QRELYCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Q+ LY     + ++A  +A          +   +  Q+ N       E         +  
Sbjct: 830 QKSLYNKTVEDTLDAIATAPRGQRHGQVLALLTRLKQICNHPALAQREGAVDAEFLSRSA 889

Query: 58  ALE-----VIIEKANAAPIIVAYHFN---SDLAR-LQKAFP------QGRTLDKDPC-TI 101
            L      +          ++   F      L   +Q+ +        G T   D    +
Sbjct: 890 KLMRLEEILEEVIEAGDRALLFTQFAEWGHLLQAWMQQRWKSEVPFLHGGTRKSDRQAMV 949

Query: 102 QEWNEG--KIPLLFAHPASCGHGLNLQYGGNIL 132
             + E      L      + G GLNL    ++ 
Sbjct: 950 DRFQEDPRGPQLFLLSLKAGGVGLNLTRASHVF 982


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 48  WKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQ----------G 91
           W E HD K   L  +++ +N       +  +V          L++   Q           
Sbjct: 459 WVEEHD-KRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGD 517

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT  +    ++ +  GK P+L A  A    GL++ +  + ++ F L  D+EE+   + RI
Sbjct: 518 RTQREREDALRRFRAGKAPILVA-TAVAARGLDIPHVKH-VINFDLPGDVEEY---VHRI 572

Query: 152 GVTRQRQAG 160
           G  R  + G
Sbjct: 573 G--RTGRMG 579


>gi|330825863|ref|YP_004389166.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329311235|gb|AEB85650.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 1680

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T  +     +   EG++ +L       G G N+Q     L      W   + +Q   
Sbjct: 1322 DAETDAQKATLFKAVREGRVRVLLGSTGKMGVGTNVQTRLVALHHLDAPWRPCDVEQREG 1381

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            RI     RQ      V ++  + + + D    Q L TK+     ++   K
Sbjct: 1382 RIL----RQGNECEEVEIFRYVTEQSFDAYSWQTLETKARFIAQVMRGDK 1427


>gi|330506469|ref|YP_004382897.1| hypothetical protein MCON_0177 [Methanosaeta concilii GP-6]
 gi|328927277|gb|AEB67079.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 1111

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           K   +GR++++     Q +N    P + A  +    GL+     + +V ++L  +  + +
Sbjct: 917 KKSDEGRSVNRISQVRQAFNSPFWPFVLATTSIGQEGLDFHAYCHAIVHWNLPSNPVDLE 976

Query: 146 QMIERIGVTRQRQA 159
           Q   RI   +    
Sbjct: 977 QREGRIHRFKGHAI 990


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score = 38.8 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQE 103
            +K+ AL+ IIEK +   +IV  +    + RL                    K    + +
Sbjct: 240 SDKLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQYKVVILSGDVIQAKREKYLAQ 299

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +G   +L A     G G+++      +V ++L    +++   + RIG  R  +AG K
Sbjct: 300 FRQGDANILVA-TDVAGRGIHVDDVAC-VVNYTLPDSPDDY---VHRIG--RTGRAGNK 351


>gi|301167651|emb|CBW27234.1| RNA polymerase associated protein [Bacteriovorax marinus SJ]
          Length = 901

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 52  HDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
              K+ ALE  I E A +    V   F+SDL+ + +        D+      + N  +I 
Sbjct: 456 SKAKVLALEKFIRENATSTNTAV---FHSDLSLMAR--------DRQAAYFADNNGAQI- 503

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                      G N ++  N L+ F L  + +  +Q I R+      + G KR + ++
Sbjct: 504 --LLCTEIGSEGRNFEFASN-LILFDLPSNPDYLEQRIGRLD-----RIGQKRDIQIH 553


>gi|251797763|ref|YP_003012494.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
 gi|247545389|gb|ACT02408.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
          Length = 554

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----DKDPCTIQEWNEGKI 109
           K+  +  ++E+    P ++   +   L  +  +            ++     +++  G +
Sbjct: 409 KVPVVRQLLERHEGTPTLIIGQYLDQLHSIADSLEVPVITGELPQNERQSLYEQFKSGGV 468

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P+L          ++L      +     +   +E  Q I RI   ++ +       + Y 
Sbjct: 469 PVLAVS-KVANFAVDLPDAAVAIQISGSYGSRQEEAQRIGRILRPKEGR----NEAWFYT 523

Query: 170 LIAQNTIDELVLQRLR 185
           ++  +T +     R +
Sbjct: 524 IVTDDTSETEYAARRQ 539


>gi|153843859|ref|ZP_01993600.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|149745283|gb|EDM56534.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
          Length = 260

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V     +    +      AL  E  + + 
Sbjct: 7   EEIFQEFEGDDASWWQFDSRVNWLLE----KVKEKRGEKILVIASRASTALQLEQALRER 62

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 63  EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 109

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L ++ +  +Q I R+      + G  R + ++    + T
Sbjct: 110 F-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQNRDIDIHVPYLKGT 152


>gi|47079403|gb|AAT10146.1| ATP-dependent RNA helicase [uncultured marine group II
           euryarchaeote DeepAnt-JyKC7]
          Length = 878

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +K+   G T  +    I+E+  G   +L A  +    GL++    ++++F+         
Sbjct: 399 RKSSAGGLTPKQQVARIEEFRSGSANVLIA-TSVGEEGLDI-PTADLVIFYEPVPS---E 453

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + I+R G T + + G    V V  LIA++T DE        K       +  +++
Sbjct: 454 IRTIQRRGRTGRHRDG---DVVV--LIAEDTRDEGARAAALRKEENMHRAVQRVRR 504


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
           H  K+ A   I+E  +   +IV      +   + +                  ++   T+
Sbjct: 283 HRAKLDAFTRILEVTDYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTV 342

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
            +  +G++ +L A       GL++    + +V F +  D E +   + RIG T R  + G
Sbjct: 343 DQLKDGRLDILVA-TDVAARGLDVDRITH-VVNFDIPNDTESY---VHRIGRTGRAGRTG 397

Query: 161 F 161
            
Sbjct: 398 E 398


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 16/118 (13%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD------PCTIQEW 104
           K+ ALE ++E   +  +I+     +        L+        L+ D        TI+  
Sbjct: 275 KLAALERVLESETSEGVIIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERL 334

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
             G++ +L A       GL+++  G +++ + + +D E +   + RIG T R  ++G 
Sbjct: 335 KNGQVDVLVA-TDVAARGLDVERIG-LVINYDIPFDGEAY---VHRIGRTGRAGRSGE 387


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 469 VGGACSDVEQTIVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKIST 528

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F +   ++E+ 
Sbjct: 529 TSIHGDREQREREKALSDFRLGQCPVLVA-TSVAARGLDIEQVQH-VVNFDMPSSIDEYV 586

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 587 HRIGRTGRCG 596


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score = 38.8 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 496 VGGACSDVEQTIVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKIST 555

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F +   ++E+ 
Sbjct: 556 TSIHGDREQREREKALSDFRLGQCPVLVA-TSVAARGLDIEQVQH-VVNFDMPSSIDEYV 613

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 614 HRIGRTGRCG 623


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 24/129 (18%)

Query: 48  WKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQ----------G 91
           W E HD K   L  +++ +N       +  +V          L++               
Sbjct: 446 WVEEHD-KRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGD 504

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT  +    ++ +  GK P+L A  A    GL++ +  + ++ F L  D+EE+   + RI
Sbjct: 505 RTQREREEALRRFRAGKAPILVA-TAVAARGLDIPHVKH-VINFDLPGDVEEY---VHRI 559

Query: 152 GVTRQRQAG 160
           G  R  + G
Sbjct: 560 G--RTGRMG 566


>gi|113970284|ref|YP_734077.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
 gi|113884968|gb|ABI39020.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. MR-4]
          Length = 658

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +K     Q++ +GKI ++ A  A  G G++ +     +V + L   +E + Q I R G  
Sbjct: 275 EKRQQIQQDFMQGKIRIVVATIA-FGMGID-KSNIRFVVHYDLPKSIENYCQEIGRAGRD 332

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            Q        V +  L   NT++  V       ++I   +++ +++ET
Sbjct: 333 GQ----LSHCVTLANLDGINTVENFVYGDTPELASI-TAVIDNIREET 375


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
           E++  +     K++AL  ++E  N   II+     +    L +                 
Sbjct: 221 EQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMN 280

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  + +   GK+ +L A       GL+++  G+ ++ + + +D E +   + RIG 
Sbjct: 281 QQARERAVDQLKRGKLDILIA-TDVAARGLDVERIGH-VINYDIPYDTEAY---VHRIGR 335

Query: 154 T-RQRQAGFKRAVFVYY-LIAQNTIDE 178
           T R  + G       +  +    TI+ 
Sbjct: 336 TGRAGRTGMAILFVTHREMRMLRTIER 362


>gi|8825618|gb|AAF74278.2| vasa-like protein [Danio dangila]
          Length = 399

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
             GA    E+   +     K   L  ++        +V          +     Q     
Sbjct: 180 VGGACSDVEQTIVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKIST 239

Query: 91  -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R   +    + ++  G+ P+L A  +    GL+++   + +V F +   ++E+ 
Sbjct: 240 TSIHGDREQREREKALSDFRIGQCPVLVA-TSVAARGLDIEQVQH-VVNFDMPSSIDEYV 297

Query: 146 QMIERIGVTR 155
             I R G   
Sbjct: 298 HRIGRTGRCG 307


>gi|298705316|emb|CBJ49006.1| DNA helicase recq1, putative [Ectocarpus siliculosus]
          Length = 678

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+   +     Q W  G +P++ A  A  G G+N       +V FSL   LE + Q   R
Sbjct: 246 GQEERERSRVQQAWMRGDVPVIVATIA-FGMGIN-HLEVRFVVHFSLSKSLENYYQESGR 303

Query: 151 IGVTRQRQAGFKRAVFVYY 169
            G   +      R V  Y 
Sbjct: 304 AGRDGK----PSRCVVFYR 318


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score = 38.8 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQE 103
            ++ A+  I +       IV       +  L  A  Q   L           +    +  
Sbjct: 230 RRVDAVCRIFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSR 289

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF- 161
           +  G I +L A       GL++    + ++ F L  D E +   + RIG T R  + G  
Sbjct: 290 FRAGGISVLVA-TDVAARGLDVDD-VDTVINFDLPNDPETY---VHRIGRTGRAGRTGQA 344

Query: 162 -----KRAVFVYYLIAQNT---IDELVL 181
                 R V+    I + T   ID   +
Sbjct: 345 FSFAAGRDVYKLRDIQRVTGSRIDRRAM 372


>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 769

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 36/167 (21%)

Query: 34  QLANGAVYYDEEKHWKEVHDE-KIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKA-- 87
           Q+A G      +K  +   D  K+K L  I++K    + + II+   F   +  + +   
Sbjct: 344 QMAVGL----ADKAVENGVDHPKLKRLMQILKKELKNSNSRIIIFTQFRDSVENIYQHCM 399

Query: 88  ----------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                             +G T  K    I+ +  G+  +     +    G+++    ++
Sbjct: 400 ETNINAVKFYGQASRENEKGLTQKKQKEIIKSFKNGEYDV-LISTSVAEEGIDI-PSVDL 457

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
           +V +          Q        R+ + G K    ++ LI + T DE
Sbjct: 458 VVLYEPVPSEIRMIQ--------RRGRTGRKNRGRMFILITKGTRDE 496


>gi|289807041|ref|ZP_06537670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 339

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 116 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 175

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + E+  G + +L A     
Sbjct: 176 RAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVA-TDVA 234

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++      +  + L  D E++   + RIG T R   +G  
Sbjct: 235 ARGLHI-PAVTHVFNYDLPDDCEDY---VHRIGRTGRAGASGHS 274


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD------PCTIQE 103
            K++AL  ++E      +I+     +    + ++          L+ D        TI+ 
Sbjct: 286 HKLEALNRVLEAETGEGVIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIER 345

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
             +G I +L A       GL++    ++++ + + +D E +   + RIG T R  + G
Sbjct: 346 LRKGSINILVA-TDVAARGLDV-DRVSLVINYDIPFDSEAY---VHRIGRTGRAGRTG 398


>gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1]
          Length = 480

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 308 NVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAA 367

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 368 QLSGDVPQHKRIRTLESFREGRITVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 423

Query: 147 MIERIGVTRQRQAG 160
            + RIG  R  +AG
Sbjct: 424 -VHRIG--RTGRAG 434


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK-IKALEV 61
            Y + +R    DL                   + +G  Y  +      V  +K   +LE 
Sbjct: 543 VYDQDKRSYLLDL----------------LSSIRDGPEYSKDNLTLIFVETKKGADSLEE 586

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +           Y  N  +  +       RT  +    ++ +  G  P+L A  A    
Sbjct: 587 FL-----------YQCNHPVTSIHG----DRTQKEREEALRCFRSGDCPILVA-TAVAAR 630

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           GL++ +  + ++ F L  D+EE+   + RIG  R  + G
Sbjct: 631 GLDIPHVTH-VINFDLPTDVEEY---VHRIG--RTGRMG 663


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK-IKALEV 61
            Y + +R    DL                   + +G  Y  +      V  +K   +LE 
Sbjct: 529 VYDQDKRSYLLDL----------------LSSIRDGPEYSKDNLTLIFVETKKGADSLEE 572

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +           Y  N  +  +       RT  +    ++ +  G  P+L A  A    
Sbjct: 573 FL-----------YQCNHPVTSIHG----DRTQKEREEALRCFRSGDCPILVA-TAVAAR 616

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           GL++ +  + ++ F L  D+EE+   + RIG  R  + G
Sbjct: 617 GLDIPHVTH-VINFDLPTDVEEY---VHRIG--RTGRMG 649


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK-IKALEV 61
            Y + +R    DL                   + +G  Y  +      V  +K   +LE 
Sbjct: 532 VYDQDKRSYLLDL----------------LSSIRDGPEYSKDNLTLIFVETKKGADSLEE 575

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +           Y  N  +  +       RT  +    ++ +  G  P+L A  A    
Sbjct: 576 FL-----------YQCNHPVTSIHG----DRTQKEREEALRCFRSGDCPILVA-TAVAAR 619

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           GL++ +  + ++ F L  D+EE+   + RIG  R  + G
Sbjct: 620 GLDIPHVTH-VINFDLPTDVEEY---VHRIG--RTGRMG 652


>gi|14590364|ref|NP_142430.1| hypothetical protein PH0450 [Pyrococcus horikoshii OT3]
 gi|3256853|dbj|BAA29536.1| 449aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 449

 Score = 38.8 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 11/147 (7%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKD 97
           ++ +        KI+ L  I+E+     II+   +N  +  + + F            + 
Sbjct: 300 EKSRKIALGSKGKIEELRKILERHRGEKIIIFTRYNELVYEISRKFLIPAITHKTDKKER 359

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ +G I            G+++    ++ V  S      E  Q + RI     R
Sbjct: 360 SEILKKFRKG-IYKAVVSSQVLDEGIDVPD-ASVGVIISGTGSPRELIQRLGRIL----R 413

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRL 184
            A  K    +Y L+   T +  +  R 
Sbjct: 414 SAPGKEKAILYELVTPGTAEVRIASRR 440


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 24/129 (18%)

Query: 48  WKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFP----------QG 91
           W E HD K   L  +++ +N       +  +V          L++               
Sbjct: 451 WVEEHD-KRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGD 509

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT  +    ++ +  GK P+L A  A    GL++ +  + ++ F L  D+EE+   + RI
Sbjct: 510 RTQREREEALRRFRAGKAPILVA-TAVAARGLDIPHVKH-VINFDLPGDVEEY---VHRI 564

Query: 152 GVTRQRQAG 160
           G  R  + G
Sbjct: 565 G--RTGRMG 571


>gi|241765668|ref|ZP_04763619.1| DEAD-like helicase [Acidovorax delafieldii 2AN]
 gi|241364481|gb|EER59578.1| DEAD-like helicase [Acidovorax delafieldii 2AN]
          Length = 759

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 21/154 (13%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I ++  A    ++    +        RL+    Q               +   
Sbjct: 581 KERELIEICKEGKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRED 640

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 641 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYSLQQAARRSW-----RI 694

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G K +V V YL    T     L+ +  K  +   
Sbjct: 695 GQKLSVRVIYLGYAATSQMTCLELMAKKIMVSQS 728


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARL---Q 85
           +  GA    E+   +   ++K   L+ I+E+ N         + V     +D   +   +
Sbjct: 412 IVGGARSDVEQNFCEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSE 471

Query: 86  KAFPQG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +P       R   +    + ++  G++ +L A  A    GL+++   + ++ + L   
Sbjct: 472 NNYPTTSIHGDRLQRQREEALADFKSGRMSILVA-TAVAARGLDIKNVSH-VINYDLPKG 529

Query: 141 LEEHQQMIERIGVTRQR 157
           ++E+   I R G    R
Sbjct: 530 IDEYVHRIGRTGRVGNR 546


>gi|118577274|ref|YP_899514.1| helicase domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504779|gb|ABL01261.1| helicase domain protein [Pelobacter propionicus DSM 2379]
          Length = 1109

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 31/162 (19%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSD-----LARLQKAFPQGRTLD 95
            +  K W+   D ++ AL  +  K +A   +++   F           L++   Q   + 
Sbjct: 684 INMVKEWRPKDDRQLNALYELCTKTHAKEKLLIFTQFADTARYLAEELLKRGMTQIEGVT 743

Query: 96  KDPCTIQEWNEGKIPL---------------LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            D     +      P+               +         G NLQ   ++++ + L W 
Sbjct: 744 GDTDDPTDNARRFSPISNGVKGVAGTPQEIRVLISTDVLSEGQNLQDS-HVVLNYDLPWA 802

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +    Q   R+      + G K      +++  + + E  L+
Sbjct: 803 IIRLIQRAGRVD-----RIGQKSD----HILCYSFLPEDGLE 835


>gi|114047525|ref|YP_738075.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
 gi|113888967|gb|ABI43018.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. MR-7]
          Length = 665

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +K     Q++ +GKI ++ A  A  G G++ +     +V + L   +E + Q I R G  
Sbjct: 282 EKRQQIQQDFMQGKIRIVVATIA-FGMGID-KSNIRFVVHYDLPKSIENYCQEIGRAGRD 339

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            Q        V +  L   NT++  V       ++I   +++ +++ET
Sbjct: 340 GQ----LSHCVTLANLDGINTVENFVYGDTPELASI-TAVIDNIREET 382


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD-- 97
           E++  +     K++AL  ++E  N   II+     +    L +           L  D  
Sbjct: 221 EQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMN 280

Query: 98  ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  + +   GK+ +L A       GL+++  G+ +V + + +D E +   + RIG 
Sbjct: 281 QQARERAVDQLKSGKLDILIA-TDVAARGLDVERIGH-VVNYDIPYDTEAY---VHRIGR 335

Query: 154 T-RQRQAG 160
           T R  + G
Sbjct: 336 TGRAGRTG 343


>gi|259046870|ref|ZP_05737271.1| ATP-dependent DNA helicase [Granulicatella adiacens ATCC 49175]
 gi|259036493|gb|EEW37748.1| ATP-dependent DNA helicase [Granulicatella adiacens ATCC 49175]
          Length = 457

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
             A   + E     V   + K L  ++++    P IV      ++  L+ +  +      
Sbjct: 194 GHAFLKNREIDVISVEGLRSKMLSELLKRVE-YPCIVYASTIKEIEGLKGSLQEEGFTKI 252

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 R         Q++  G+I +L A  ++ G G+N Q     ++ F L   LE++ 
Sbjct: 253 DTFHSKRHSSDRQTIQQKFFRGEINILLA-TSAFGMGIN-QSNIRTIIHFQLPQTLEDYV 310

Query: 146 QMIERIGVTRQ 156
           Q I R G   Q
Sbjct: 311 QQIGRAGRDLQ 321


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 24/132 (18%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN--------------SDLARLQKAFPQ 90
           ++     +  KI+AL  ++E      +I+                    D+A L    PQ
Sbjct: 273 QRSITLQNAHKIEALNRVLEAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQ 332

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++   T+    +G + +L A       GL++   G +++ + + +D E +   + R
Sbjct: 333 ----NQRERTVDRLRKGTVNILVA-TDVAARGLDVDRIG-LVINYDMPFDSEAY---VHR 383

Query: 151 IGVT-RQRQAGF 161
           IG T R  + G 
Sbjct: 384 IGRTGRAGRTGE 395


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTL------DKD 97
           +     +KI  L  ++ + +A   +V  +   D  R+             +       K 
Sbjct: 234 YHVASADKIGLLLGVLRQQDATRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKR 293

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +Q + EGK+P+L A       GL++    + +V + L  + E++   + RIG  R  
Sbjct: 294 EQLLQRFQEGKLPMLVA-TDVAARGLHIPD-VSRIVNYDLPQNAEDY---VHRIG--RTA 346

Query: 158 QAG 160
           +AG
Sbjct: 347 RAG 349


>gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1]
 gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
 gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 480

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 308 NVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAA 367

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 368 QLSGDVPQHKRIRTLESFREGRITVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 423

Query: 147 MIERIGVTRQRQAG 160
            + RIG  R  +AG
Sbjct: 424 -VHRIG--RTGRAG 434


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score = 38.8 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 17/127 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RT 93
           E++        K   L  I+  A+   ++V         R+ +   +           ++
Sbjct: 223 EQRVVHVPTGAKQALLATILRDASIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKS 282

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +  +  G   +L A       G+++  G + +V F L    E +   + RIG 
Sbjct: 283 QPQRERALAAFRAGICRVLVA-TDIAARGIDV-EGVSHVVNFDLPNVPEAY---VHRIG- 336

Query: 154 TRQRQAG 160
            R  +AG
Sbjct: 337 -RTARAG 342


>gi|149190305|ref|ZP_01868579.1| ATP-dependent helicase HepA [Vibrio shilonii AK1]
 gi|148835912|gb|EDL52875.1| ATP-dependent helicase HepA [Vibrio shilonii AK1]
          Length = 969

 Score = 38.8 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            LE  + +       V +   S L R           DK         EG   +L     
Sbjct: 520 QLEQALREREGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-E 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G N Q+  N LV F L ++ +  +Q I R+      + G KR + V+    +NT
Sbjct: 567 IGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----RIGQKRDIDVHVPYLENT 618


>gi|70607390|ref|YP_256260.1| hypothetical protein Saci_1657 [Sulfolobus acidocaldarius DSM 639]
 gi|68568038|gb|AAY80967.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 443

 Score = 38.8 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 30/209 (14%)

Query: 1   MKQYHKF---QRELYCDLQGENIE-------AFNSASKTVKCLQLAN-------GAVYYD 43
           +K+Y +    ++E Y +L+G+  E         NS +   K ++LA+         + + 
Sbjct: 242 IKEYVEMTSEEKERYKELRGKLKEFLSSRGMRLNSLNDFYKLIRLASKDKKAREALLAWH 301

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT--- 100
           E          KI+ L  ++ + +   IIV          + K F       K       
Sbjct: 302 ESLRLAVNSRAKIEKLRELLREFHDRKIIVFTRDTELAYDISKEFLIPVVTYKTSKDERF 361

Query: 101 --IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++ EG   ++ A       G+++      ++           +Q I+R+G   + +
Sbjct: 362 EILSKFKEGNYRVIVAST-VFDEGVDIPDAEIAIIMGG----YGTKRQFIQRLGRILRGR 416

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               +   +  ++ + T D  + +R   K
Sbjct: 417 G---KKALLIEIVTKGTADYRLSKRREYK 442


>gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
          Length = 398

 Score = 38.8 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--- 93
           N A    E+  +     +K K L  ++ +     ++V  +   ++ R+++   +      
Sbjct: 226 NVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAA 285

Query: 94  -------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K   T++ + EG+I +L A     G G+++  G + ++ F+L  D +++  
Sbjct: 286 QLSGDVPQHKRIRTLESFREGRITVLVA-TDVAGRGIHI-DGISHVINFTLPEDPDDY-- 341

Query: 147 MIERIGVTRQRQAG 160
            + RIG  R  +AG
Sbjct: 342 -VHRIG--RTGRAG 352


>gi|270339826|ref|ZP_06006125.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333719|gb|EFA44505.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 504

 Score = 38.8 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR-- 155
              +   N G I ++F   +  G G+N Q     +      W   + +Q   R       
Sbjct: 97  KAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAVHHLDTPWRPSDLEQRNGRAVRKGNL 156

Query: 156 --QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +  A  K  V +Y    + ++D      L  K     L +N LK  T+ 
Sbjct: 157 IAKELADNKVDVIIY--AVERSLDSYKFNLLHNKQ----LFINQLKTNTLG 201


>gi|1931649|gb|AAB65484.1| DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]
          Length = 665

 Score = 38.8 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            RLQ+   +           Q       W++ +I ++ A  A  G G+N +     ++  
Sbjct: 362 ERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA-FGMGIN-KPDVRFVIHH 419

Query: 136 SLWWDLEEHQQMIERIGVTRQRQA-----GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           SL   +E + Q   R G   QR +     G+   + V ++I+Q  +D+  +     +   
Sbjct: 420 SLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVAS 479

Query: 191 QDLLLN 196
              LL 
Sbjct: 480 SGRLLE 485


>gi|323491712|ref|ZP_08096890.1| DNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323314074|gb|EGA67160.1| DNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 644

 Score = 38.8 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCT 100
           + DEK +AL  +++ A   P IV     +   ++                     +    
Sbjct: 218 LDDEKPQALLELVQSAPKLPTIVYVTLQNSADQVANLLRDSGINVSAYHAGMKNGQREHI 277

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             ++  G++  + A  A  G G++       ++ F L   +E + Q I R G   Q
Sbjct: 278 QAQFMRGELDCIVATIA-FGMGVDKSD-IRRVIHFDLPKSIENYAQEIGRAGRDGQ 331


>gi|254425494|ref|ZP_05039211.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196187917|gb|EDX82882.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 924

 Score = 38.8 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 34/176 (19%)

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVA-------YHFNSDLARLQKAFPQGRTLDKD--- 97
           E  D K++AL   +   +AN   +I+         + ++ L+ L        T++K    
Sbjct: 575 EAADTKLRALVERLNLHRANREKVIIFCERRATVVYLSNALSELMHNLSVAATIEKQADS 634

Query: 98  ---------PCTIQEW----NEGKIPL----LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       I+ +    N+    L    +F    + G G+N+Q    +++ + + W 
Sbjct: 635 FEMKESHEIEKLIEAFAPEANQADASLKSYDVFISTDAHGVGVNMQDAA-VVINYDIDWT 693

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q   RI           R V VY  +   ++D  +   L+        L++
Sbjct: 694 PIGPIQRAGRILRFWS----EARTVHVYTFVPTLSVDNPLASDLKAIQRRWHQLID 745


>gi|114330135|ref|YP_746357.1| helicase domain-containing protein [Nitrosomonas eutropha C91]
 gi|114307149|gb|ABI58392.1| helicase domain protein [Nitrosomonas eutropha C91]
          Length = 758

 Score = 38.8 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA---RLQKAFPQGRTL----------DKDPC 99
           K + L  I   EK+     +V   +        RL+    Q               +   
Sbjct: 580 KERELIDICREEKSAGRKTLVYSVYTGTRDTTSRLKILLEQEGFKVAVLRASVDASRRED 639

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I E  +  I +L  +P     GL+L      +VF    +++   QQ   R       + 
Sbjct: 640 WIAEQLDRGIDVLITNPELVKTGLDLLEFP-TIVFMQSGYNVYTLQQAARRSW-----RI 693

Query: 160 GFKRAVFVYYL 170
           G K AV V YL
Sbjct: 694 GQKLAVRVIYL 704


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score = 38.8 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           +D+K++ L  +IE+      I+  +       +                     K    +
Sbjct: 240 NDDKMRLLLTLIEEDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++  G++            GL++    + +  + L  D E++   + RIG T R    G
Sbjct: 300 EQFKAGEVD-FLVATDVAARGLHIADVTH-VFNYDLPDDAEDY---VHRIGRTGRAGATG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
 gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
          Length = 436

 Score = 38.8 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTI 101
           ++ K+  L+ ++E+      I+  +      ++                     K    +
Sbjct: 240 NEHKMALLQTLVEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAG 160
           +++ +G + +L A       GL++    + +  + L  D E++   + RIG T R   +G
Sbjct: 300 EQFTQGDVDILVA-TDVAARGLHIPQVTH-VFNYDLPDDCEDY---VHRIGRTGRAGASG 354

Query: 161 FK 162
             
Sbjct: 355 HS 356


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score = 38.8 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
           +++W     +K+ AL  I+E  N   +I+          L     Q R            
Sbjct: 223 QRYWLVSGMQKLDALTRILEAENFDGMIIFARTKLGTEELASKL-QARGFSAAAINGDIQ 281

Query: 95  -DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +   TIQ+  +GKI +L A       GL+++   + ++ + +  D E +     RIG 
Sbjct: 282 QQQRERTIQQLKDGKIDILVA-TDVAARGLDVERISH-VINYDVPHDPESY---THRIGR 336

Query: 154 T-RQRQAGF 161
           T R  ++G 
Sbjct: 337 TGRAGRSGE 345


>gi|309790713|ref|ZP_07685263.1| helicase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308227244|gb|EFO80922.1| helicase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 1054

 Score = 38.4 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 26/127 (20%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHF-------------NSDLARLQKAFPQGRTLDKDP 98
            D K+      +   + A ++V  ++               DLA  + A     T  ++ 
Sbjct: 628 ADTKLHCFLDALRSLDTAKVVVFSYYRDTAHYLAAQIAATPDLAHRRVAVLSSDTPPRER 687

Query: 99  CT-IQEW----NEGKIPL-------LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              I+ +    N  +I +       L         G NLQ  G  L+ + L W+     Q
Sbjct: 688 QALIERFAPLSNRTRIRVDAGAELDLLIATDVLSEGQNLQDAG-YLINYDLHWNPTRMIQ 746

Query: 147 MIERIGV 153
              RI  
Sbjct: 747 RNGRIDR 753


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score = 38.4 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 29/170 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             R++    +   +E  N+ +      Q     +Y  ++       + K + L  +I + 
Sbjct: 196 LARDILRKPKRIEVERANTTA------QTVAHVLYPVDQ-------ERKTELLSELIGRK 242

Query: 67  NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  ++      + K               R        ++E+  GK+ ++ A  
Sbjct: 243 NWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVA-T 301

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                GL+++   + +V + + +  E++   + RIG T  R      AV 
Sbjct: 302 DVAARGLDIEDLPH-VVNYDMPFLAEDY---VHRIGRTG-RAGKQGHAVS 346


>gi|332186964|ref|ZP_08388705.1| DNA methylase family protein [Sphingomonas sp. S17]
 gi|332012974|gb|EGI55038.1| DNA methylase family protein [Sphingomonas sp. S17]
          Length = 863

 Score = 38.4 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           L+++      +  G+  LL A P+  G G N Q+  +    F   +   +  Q + RI  
Sbjct: 365 LERNEALADGFAAGQHRLLSAKPSMLGAGRNFQHHCHRATIF-PTYKFHDFLQALHRI-- 421

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               +      V +  L+   T  E  L+ L  K      ++  +
Sbjct: 422 ---YRFMQGHEVVI-DLVYAETQAEQ-LRELMRKWDDHKAMVERM 461


>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 428

 Score = 38.4 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 25  SASKTVKCLQLA----NGAVYYD---EEKHWKEV--------HDEKIKALEVIIEKANAA 69
           SA+ + +  +LA    N A Y +   E+K    +        ++EK++ L+ +IE+    
Sbjct: 198 SATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASC 119
             I+  +       +                     K    + ++ +G + +L A     
Sbjct: 258 RAIIFANTKHRCEDIWGHLATDGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVA-TDVA 316

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFK 162
             GL++    + +  + L  D E++   + RIG T R  ++G  
Sbjct: 317 ARGLHIPLVTH-VFNYDLPDDCEDY---VHRIGRTGRAGESGHS 356


>gi|297563115|ref|YP_003682089.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847563|gb|ADH69583.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 548

 Score = 38.4 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKD-PCTIQEWNE 106
            + K   +  I+E+     ++V   +   L  L  +      +G T +K+       +  
Sbjct: 391 SETKTSVVREIVERHPDEQVLVIGSYIDQLDELGASLGAPVIKGETRNKERERLFDAFRS 450

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G +  L          ++L   G  +     +   +E  Q + R+   +       RA  
Sbjct: 451 GDLRTLVVS-KVANFSIDLPEAGVAVQVSGSFGSRQEEAQRLGRVLRPKA----DGRAAR 505

Query: 167 VYYLIAQNTIDEL 179
            Y ++A++T+D+ 
Sbjct: 506 FYAVVARDTLDQD 518


>gi|330448796|ref|ZP_08312443.1| type III restriction enzyme, res subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492987|dbj|GAA06940.1| type III restriction enzyme, res subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 972

 Score = 38.4 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            ++Y + +GE+   +N   +    L +    +  +  +    +      AL  E  + + 
Sbjct: 474 EDIYQEFEGESATWWNFDPRVNWLLDM----LKANRNEKVLVICSRAQTALTLEQALRER 529

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S + R           DK      +  +G   LL +   S G   N Q
Sbjct: 530 EGIRATVFHEGMSIIER-----------DKAAAYFAQEEDGAQVLLCSEIGSEGR--NFQ 576

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  N LV F L  + +  +Q I R+      + G KR + ++    + T
Sbjct: 577 F-ANQLVMFDLPSNPDLLEQRIGRLD-----RIGQKREIEIHVPYLEGT 619


>gi|223935786|ref|ZP_03627701.1| SNF2-related protein [bacterium Ellin514]
 gi|223895387|gb|EEF61833.1| SNF2-related protein [bacterium Ellin514]
          Length = 943

 Score = 38.4 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEG 107
           L  +++K +   +++       +  +  A           F +G TL +       + E 
Sbjct: 463 LVDLLQKLDPQKVLLICRTIEKVEAIDAALRRHVSIKTGIFHEGLTLVQRDRNAAWFAEA 522

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               L         G N Q+  + LV F L  + E  +Q I R+      + G  + + +
Sbjct: 523 DGARLLLCSEIGSEGRNFQF-AHHLVLFDLPLNPELLEQRIGRLD-----RIGQTKDIHI 576

Query: 168 Y 168
           +
Sbjct: 577 H 577


>gi|312889599|ref|ZP_07749149.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311297947|gb|EFQ75066.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 1842

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  + P   ++ N G+I +L       G GLN+Q     +    + W   E +Q   R  
Sbjct: 1428 TDKQKPELFKKMNNGQIRILIGSTEKAGTGLNVQKRVIAMHHMDIPWKPAELEQRDGRGA 1487

Query: 153  VTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                   +   G K   F+Y    + ++D      L+ K T
Sbjct: 1488 RQGNWLAKTHYGNKVRNFIY--AVEQSLDNYKFNLLKNKQT 1526


>gi|303233872|ref|ZP_07320523.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495016|gb|EFL54771.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 249

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 172 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 227

Query: 166 FVYYLIAQNTID 177
            ++  + +NT D
Sbjct: 228 NIFRYVTENTFD 239


>gi|237809105|ref|YP_002893545.1| ATP-dependent helicase HepA [Tolumonas auensis DSM 9187]
 gi|237501366|gb|ACQ93959.1| SNF2-related protein [Tolumonas auensis DSM 9187]
          Length = 959

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 26/169 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL-- 59
           K+Y   ++ ++   +G+N        +    L L    +  +  +    +  E   AL  
Sbjct: 457 KRYLYPEK-IFGQFEGDNASWTQFDPRVDWLLNL----IKTERHEKILVICSEAASALTM 511

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           E  +         V +   S L R           DK      +  +G   ++       
Sbjct: 512 ENTLRTREGVRCTVFHEGMSLLER-----------DKSAAYFAD-PDGGAQVMLCS-EIG 558

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             G N Q+  + LV F L  + +  +Q I R+      + G K  V ++
Sbjct: 559 SEGRNFQFARH-LVLFDLPLNPDLLEQRIGRLD-----RIGQKNVVQIH 601


>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 393

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------- 95
           +++ +      K K L  +++ +    +IV  +   +   L +A  +    +        
Sbjct: 235 DQRVYMVESSAKRKLLVNLLKDSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELP 294

Query: 96  --KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K   T++ +  G   +L A     G GL++  G   +V ++L  D E++   + RIG 
Sbjct: 295 QQKRLKTLERFRRGDFRVLVA-TDVAGRGLHI-DGVTHVVNYNLPDDPEDY---VHRIG- 348

Query: 154 TRQRQAG 160
            R  +AG
Sbjct: 349 -RTGRAG 354


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 16/119 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQE 103
            K + L  ++        +V         RL +               R+  +    ++ 
Sbjct: 226 AKTQLLIDLLGNHRDELALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKA 285

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
           + EG + +L A       G+++      +  F L    E     + RIG T R  + G 
Sbjct: 286 FREGTLKVLVA-TDVAARGIDIPD-VRFVYNFDLPNVPENF---VHRIGRTARAGRDGQ 339


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score = 38.4 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKD------PCTIQE 103
            K++AL+ +++      +I+     +        L+    Q   L+ D        T++ 
Sbjct: 270 HKLEALQRVLDACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVER 329

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
              G + +L A       GL++   G +++ + + +D E +   + RIG T R  + G 
Sbjct: 330 LRSGSVDILVA-TDVAARGLDVDRIG-LVINYDMPFDSEAY---VHRIGRTGRAGRTGE 383


>gi|317126192|ref|YP_004100304.1| helicase [Intrasporangium calvum DSM 43043]
 gi|315590280|gb|ADU49577.1| helicase domain protein [Intrasporangium calvum DSM 43043]
          Length = 1046

 Score = 38.4 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 39/104 (37%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +  +  +  ++ A  +      N    R  +   + +++ ++    Q +N    P + + 
Sbjct: 832 VNKVSDLSVRSGALKLESFSLRNHFAVRFGRGVTEDQSIAREGQVRQAFNSPFWPFVLSS 891

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +    GL+     + +V ++L  +  + +Q   R+   +    
Sbjct: 892 TSVGQEGLDFHQYSHAIVHWNLPSNPVDLEQREGRVHRYKGHAV 935


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score = 38.4 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           ++KIK L  +IE+      IV  +       +                     K    + 
Sbjct: 233 EDKIKLLLTLIEEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILA 292

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ--RQAG 160
           ++++G++            GL++    + +  F L  D E++   I R            
Sbjct: 293 QFSKGELD-FLVATDVAARGLHIPEVSH-VFNFDLPDDCEDYVHRIGRTARAGASGHAIS 350

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           F    + Y L   + I+E +   +      +  LL+ L K TIH
Sbjct: 351 FACEQYAYNL---HEIEEYIEHSIPLSHYDKSALLDDLTKPTIH 391


>gi|313835461|gb|EFS73175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314928522|gb|EFS92353.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|314970456|gb|EFT14554.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 549

 Score = 38.4 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K+Y    RE+         + +E   S S++ +   +       D           K + 
Sbjct: 345 KRYDAPWREIEAQGWIAPADCVEVRVSLSESDR---MTCAMAEPDVRYRMAATLPIKNRV 401

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLF 113
           +  ++E+    P ++   +   L  L             T  +   T Q++ EG++ LL 
Sbjct: 402 VRDLVERHRGQPTLIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFREGRVDLLV 461

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                    ++L      +     +   +E  Q + R+   +            Y ++++
Sbjct: 462 VS-KVANFSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSR 515

Query: 174 NTID 177
           +T+D
Sbjct: 516 DTVD 519


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score = 38.4 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TL 94
           ++ W     +K+ AL  I+E  +   +I+          L                    
Sbjct: 224 QRVWIMAGVQKLDALTRILETEDYDGVIIFVRTRIATQELADKLAARGFATAALNGDIAQ 283

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++   T+  +  G++ LL A       GL++    + ++ + +  D E +   I RIG T
Sbjct: 284 NQREKTVDSFKRGQLDLLVA-TDVAARGLDV-DRVSHVINYDIPNDPEAY---IHRIGRT 338

Query: 155 -RQRQAGF 161
            R  + G 
Sbjct: 339 GRAGRTGE 346


>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
 gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
          Length = 807

 Score = 38.4 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 35/168 (20%)

Query: 55  KIKALEVII-EKANAAP---IIVAYHFNSDLARLQKAFPQ------------GRTLDK-- 96
           K++ L+ +I ++    P   IIV  ++     ++ +   +             R  D+  
Sbjct: 355 KMEKLKELIRKQLQKKPDSKIIVFTNYRDTGKKIVEELQEMGISAERFIGQASRGRDRGM 414

Query: 97  ----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                   +  ++ G+  +L A  +    GL++    +++VF+          Q   R G
Sbjct: 415 SQREQKEVLDRFSRGEFNVLVA-TSVGEEGLDVPE-VDLVVFYEPVPSAIRSIQ---RRG 469

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            T + + G    V +  L+A+ T DE      R K      +  A++K
Sbjct: 470 RTGRHRPG---KVVI--LMAKGTRDEAYYWSSRRKEKG---MFEAIRK 509


>gi|222481309|ref|YP_002567545.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454685|gb|ACM58948.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 1124

 Score = 38.4 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 25/125 (20%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-AFPQGRTLDKD 97
             YY++   W        + LE II + +    +  Y       R+   +    +     
Sbjct: 689 FSYYEDTVDWIY------EYLEEIISEDDE---LSCYE-----GRIAAVSGDGSKYRVTR 734

Query: 98  PCTIQEW--NEGKIPL-------LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +  N G  P        +         G+NLQ     ++ + L W+     Q  
Sbjct: 735 ERAVHGFAPNSGDAPPDATDDFDILISTDVLAQGVNLQE-ARTVINYDLPWNPMRVVQRN 793

Query: 149 ERIGV 153
            RI  
Sbjct: 794 GRIDR 798


>gi|328948587|ref|YP_004365924.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328448911|gb|AEB14627.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2901

 Score = 38.4 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 93   TLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T +K       +N+ K P  +     +   G++L     ++   SL W+  E  Q   RI
Sbjct: 1996 TPEKKEKITSCFNDEKNPCKIIIGGKNTSEGIDLNGNSFVMYNCSLGWNPSETIQAEGRI 2055

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 RQ   +  V + Y +  ++ID ++ Q+   K +  + L N  K ++++V
Sbjct: 2056 ----WRQGNLQGNVHIVYPVMNDSIDSVLYQKHDEKRSRINELWN-YKGDSLNV 2104


>gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score = 38.4 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 69/175 (39%), Gaps = 34/175 (19%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQE 103
           +K +AL  +++       I+       +  L +A  +            + ++    +++
Sbjct: 141 QKFEALSRLLDMEAPELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRK 200

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G I +L A       GL++  G + ++ F L  D E +   + RIG  R  +AG + 
Sbjct: 201 FRDGSIDVLVA-TDVAARGLDV-SGVSHVINFDLPQDPESY---VHRIG--RTGRAGKEG 253

Query: 164 AVFVY-------YL-----IAQNTIDEL----VLQRLRTKST-IQDLLLNALKKE 201
             + +       +L     + ++ I       + + +  K     + +L  ++K+
Sbjct: 254 TAWTFVTPREIDHLHFIEKVTRHKISRKPLPSLAEAMEGKQKMTAERILELMEKD 308


>gi|193210307|ref|NP_001024706.2| hypothetical protein F53H4.6 [Caenorhabditis elegans]
 gi|154147305|emb|CAD89731.2| C. elegans protein F53H4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 933

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 82  ARLQKA-FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R+    F + +        +  + N   + +L A       G+ L+   N ++ F   W
Sbjct: 578 KRIAYCSFLKAKNAYDRENVVNYFENTTDVQILLAPSIMFKLGMQLKK-ANKVIIFDPEW 636

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + +   +    +    ++       V V  L+++ T+++    +   +S +   LL+  K
Sbjct: 637 NPDSDVKHTREMSFLTKK----VEDVTVVRLVSEGTVEDSSYFKKLWESGLASRLLSDPK 692

Query: 200 KET 202
            E 
Sbjct: 693 FEP 695


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
           W     +K+ AL  I+E      +++          L +                T    
Sbjct: 226 WLVQGLQKLDALTRILEAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLR 285

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQ 156
             T+++  +G + ++ A       GL++Q   + +V + + +D E +   + RIG T R 
Sbjct: 286 EKTVEQLKDGTLDIVVA-TDVAARGLDVQRISH-VVNYDIPYDTESY---VHRIGRTGRA 340

Query: 157 RQAGFK------RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G        R + + + I + T  ++   +L ++  +    ++  K++ I
Sbjct: 341 GRQGQAIIFVAPREMRMLHAIEKATRQQISRLQLPSRREVNQRRIDQFKEKII 393


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP------- 89
           + ++  D++  +    D K+ AL  + +K    PI++          L +          
Sbjct: 457 SASINVDQKLLFVGKEDGKLLALRQLFQKGLEPPILIFVQSKERATELFQELIFDNINVD 516

Query: 90  ---QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                RT  +    +Q +  GKI +L         G++   G N ++ F     +  +  
Sbjct: 517 VIHSDRTQQQRDTIVQRFRSGKIWVLIC-TELMARGMDF-KGVNYVINFDFPNTIASY-- 572

Query: 147 MIERIGVTRQRQAGFKRAVFVY 168
            + RIG T  R     +A+ +Y
Sbjct: 573 -VHRIGRTG-RAGRQGKAITLY 592


>gi|315179044|gb|ADT85958.1| RNA polymerase-associated protein HepA [Vibrio furnissii NCTC
           11218]
          Length = 969

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V          +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKAKRSDKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  + LV F L ++ +  +Q I R+      + G K  + ++    + T
Sbjct: 576 F-ASQLVMFDLPFNPDLLEQRIGRLD-----RIGQKNDIDIHVPYLKGT 618


>gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
 gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
          Length = 496

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++   D     IEA N AS  V             E+  +     +K K L  ++   
Sbjct: 305 LAKQWTTDPAIVEIEAENVASANV-------------EQHIYAVAGADKYKLLYNLVTDN 351

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHP 116
               ++V  +   ++ R+++   +               K   T++ + EGKI +L A  
Sbjct: 352 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA-T 410

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              G G+++  G + ++ F+L    +++   + RIG  R  +AG
Sbjct: 411 DVAGRGIHI-DGISHVINFTLPEVPDDY---VHRIG--RTGRAG 448


>gi|73670114|ref|YP_306129.1| DNA repair helicase RAD25 [Methanosarcina barkeri str. Fusaro]
 gi|72397276|gb|AAZ71549.1| DNA repair helicase RAD25 [Methanosarcina barkeri str. Fusaro]
          Length = 491

 Score = 38.4 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNE 106
            + KI+ L+ I+       I +    N  + R+ + F       + P       ++++ E
Sbjct: 318 TESKIEKLKEILNTHREDRIFIFTEHNRLVHRISREFLIPAITYRTPAKERNSILEKFKE 377

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK   +         G+++    NI +  S       + Q + RI      +    +   
Sbjct: 378 GKYRAVVTS-KVLDEGIDVPE-ANIGIIASGTGSKLAYIQRLGRIL-----RKKEGKEAI 430

Query: 167 VYYLIAQNTIDELVLQRLRT 186
           +Y +I + T +    +R + 
Sbjct: 431 LYEIITEETTEAGTARRRKK 450


>gi|260770998|ref|ZP_05879927.1| RNA polymerase associated protein RapA [Vibrio furnissii CIP
           102972]
 gi|260614235|gb|EEX39425.1| RNA polymerase associated protein RapA [Vibrio furnissii CIP
           102972]
          Length = 969

 Score = 38.4 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--EVIIEKA 66
            E++ + +G++   +   S+    L+     V          +      AL  E  + + 
Sbjct: 473 EEIFQEFEGDDASWWQFDSRVNWLLE----KVKAKRSDKILVIASRASTALQLEQALRER 528

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                 V +   S L R           DK         EG   +L         G N Q
Sbjct: 529 EGIRATVFHEGMSILER-----------DKAAAYF-AQEEGGAQVLICS-EIGSEGRNFQ 575

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           +  + LV F L ++ +  +Q I R+      + G K  + ++    + T
Sbjct: 576 F-ASQLVMFDLPFNPDLLEQRIGRLD-----RIGQKNDIDIHVPYLKGT 618


>gi|83590752|ref|YP_430761.1| DEAD/DEAH box helicase-like [Moorella thermoacetica ATCC 39073]
 gi|83573666|gb|ABC20218.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC
           39073]
          Length = 602

 Score = 38.4 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTI-QEWNEGKI 109
           K   +E II++     ++V   +   L RL +        G+T +++   + Q + EG +
Sbjct: 410 KEAVVENIIKRHEGEQVLVIGQYLEQLERLARRLGVPMITGQTSNRERERLYQAFREGTL 469

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L          ++L      +     +   +E  Q + RI   ++           Y 
Sbjct: 470 KCLVVS-KVANFAIDLPEASVAVQVSGAFGSRQEEAQRLGRILRPKKGGL----PASFYT 524

Query: 170 LIAQNTIDE 178
           L+ + T+++
Sbjct: 525 LVTRETVEQ 533


>gi|307067514|ref|YP_003876480.1| DNA methylase [Streptococcus pneumoniae AP200]
 gi|306409051|gb|ADM84478.1| DNA methylase [Streptococcus pneumoniae AP200]
          Length = 2098

 Score = 38.4 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L    + W   + +Q   RI     RQ      V
Sbjct: 2021 RGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQRSGRIV----RQGNENDKV 2076

Query: 166  FVYYLIAQNTID 177
             ++  + +NT D
Sbjct: 2077 NIFRYVTENTFD 2088


>gi|163849725|ref|YP_001637768.1| helicase domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661330|gb|ABY28697.1| helicase domain protein [Methylobacterium extorquens PA1]
          Length = 919

 Score = 38.4 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI--AQNTIDEL 179
           G+NLQ   + +V + L W+   HQQ   R+      + G    +    L+  + + ID  
Sbjct: 524 GINLQMLFDAVVHYDLSWNPTRHQQREGRVD-----RFGQPAPLVKSMLLFGSDSLIDSA 578

Query: 180 VLQRLRTKST 189
           VL  +  K+ 
Sbjct: 579 VLSVILRKAE 588


>gi|124028136|ref|YP_001013456.1| superfamily II DNA/RNA helicase [Hyperthermus butylicus DSM 5456]
 gi|123978830|gb|ABM81111.1| DNA or RNA helicases of superfamily II [Hyperthermus butylicus DSM
           5456]
          Length = 540

 Score = 38.4 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 25/197 (12%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K+Y K + E        +  E   +AS    +  K LQL +        +    +   K+
Sbjct: 350 KKYEKLKNEYKVLSAGRKVEELVKAASAGDERAKKALQLLSQM------RLLVALSRAKL 403

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-----IQEWNEGKI 109
              + I++   A  + I+V   +     R+ K         K          + +  G+ 
Sbjct: 404 AEAKRIVDSELAKGSKILVFTQYIEQAERVGKILGAPVITSKTDKARRALAFELFKRGRY 463

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L         G+++      L+           +Q I+R+G   + Q G  +   +YY
Sbjct: 464 RVLVL-TTVGDEGIDVPDANVGLILSG----TSSRRQFIQRLGRLLRPQPG--KVSKLYY 516

Query: 170 LIAQNTIDELVLQRLRT 186
           +  + T ++ +L+++  
Sbjct: 517 IAVRGTAEQAILKKIAE 533


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score = 38.4 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +++    +   +E  N+ +      Q     +Y  ++       + K + L  +I + 
Sbjct: 196 LAKDILRKPKRIEVERANTTA------QTVAHVLYPVDQ-------ERKTELLSELIGRK 242

Query: 67  NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  ++      + K               R        ++E+  GK  ++ A  
Sbjct: 243 NWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVA-T 301

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                GL+++   + +V + + +  E++   + RIG T  R      AV 
Sbjct: 302 DVAARGLDIEDLPH-VVNYDMPFLAEDY---VHRIGRTG-RAGKQGHAVS 346


>gi|320589905|gb|EFX02361.1| DNA/RNA helicase [Grosmannia clavigera kw1407]
          Length = 1186

 Score = 38.4 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G   LL A  A  G GLNLQ   N  V  +         +  E     R  + G + +V
Sbjct: 1094 SGSCRLLIATFAIAGTGLNLQ-AANYQVLTAP-----LRHRADEEQCFRRTNRGGQQLSV 1147

Query: 166  FVYYLIAQNTIDELVLQRLRT 186
              Y L+++++  + ++   ++
Sbjct: 1148 HHYLLLSEDSPYDRLMVAAQS 1168


>gi|312128987|ref|YP_003996327.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
 gi|311905533|gb|ADQ15974.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
          Length = 1805

 Score = 38.4 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            K  K  Q     +   +   W    + K K +E      +  P         ++  +Q+ 
Sbjct: 1359 KAQKGTQFVFSDLGTYKPGEWNVYSEIKRKLVED-----HGVPA-------HEVRFIQE- 1405

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +   +    I   NEGKI +LF   +  G G+N Q     +      W   +  Q 
Sbjct: 1406 ---AKNDKQRKELINGMNEGKIRVLFGSTSMLGTGVNAQKRAVAVHHLDTPWRPSDLAQR 1462

Query: 148  IER 150
              R
Sbjct: 1463 DGR 1465


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score = 38.4 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           + K + L  +I   N   ++V         RL+K   +           +T       ++
Sbjct: 230 EYKRELLSYLIGSNNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALE 289

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++  GK+ +L A       GL++    + +V F +    E++   I RIG  R  +AG
Sbjct: 290 QFKTGKVSVLVA-TDIAARGLDIDDLPH-VVNFDVPQVPEDY---IHRIG--RTGRAG 340


>gi|240948985|ref|ZP_04753339.1| ATP-dependent helicase HepA [Actinobacillus minor NM305]
 gi|240296572|gb|EER47190.1| ATP-dependent helicase HepA [Actinobacillus minor NM305]
          Length = 969

 Score = 38.4 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           DK      +  EG    +    +
Sbjct: 520 ALEQILREKEAIRAAVFHERMSIVER-----------DKASAYFAQQEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + LV F+L    +  +Q I R+      + G K  + +Y
Sbjct: 567 IGSEGRNFQFASD-LVLFNLPDHPDVLEQSIGRLD-----RIGQKNDIKIY 611


>gi|332140107|ref|YP_004425845.1| ATP-dependent helicase HepA [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550129|gb|AEA96847.1| ATP-dependent helicase HepA [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 947

 Score = 38.4 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 17/165 (10%)

Query: 13  CDLQGENIEAFNSASKTV-----KCLQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEK 65
             L     +A +    T      +   + N    +D    W        K + + +I   
Sbjct: 440 LALPEVYADAVSGGDLTYSLYPERMANVVNSWTKHDPRVEWLLDFMQSVKPEKILLICAS 499

Query: 66  ANAAPII--VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           A  A  +  V    +     +          DK      +  EG   LL +   S G   
Sbjct: 500 ARTAQELGEVIRTQSGIRHSVFHEGMSIVERDKAAHYFADEEEGAQILLCSEIGSEGR-- 557

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           N Q+  + LV F L    +  +Q I R+      + G  + V ++
Sbjct: 558 NFQF-AHHLVLFDLPITPDLLEQRIGRLD-----RIGQTQTVQIH 596


>gi|288925574|ref|ZP_06419506.1| DNA methylase [Prevotella buccae D17]
 gi|288337512|gb|EFC75866.1| DNA methylase [Prevotella buccae D17]
          Length = 1830

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T       I   NEG I +LF   +  G G+N Q     +      W   + +
Sbjct: 1381 RFIQEAKTDKARKTLIAGMNEGSIRVLFGSTSMLGTGVNAQKRAVAIHHLDTPWRPSDLE 1440

Query: 146  QMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R         +  A  K  V +Y    + ++D      L  K    + L
Sbjct: 1441 QRDGRAVRKGNEVAKFHADNKVDVIIY--AVEKSLDSYKFNLLHNKQLFIEQL 1491


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
              K  AL  I+ + +    IV         R+     +           ++      ++
Sbjct: 229 SSSKRAALLDILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSL 288

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+I +L A       G+++  G + +V + L    E +   + RIG  R  +AG 
Sbjct: 289 DGFKNGRIKILVA-TDIAARGIDI-DGVSHVVNYELPNVPEAY---VHRIG--RTARAGK 341

Query: 162 K 162
            
Sbjct: 342 S 342


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--- 91
           +  GA    E+   +    +K + L  I+  +    ++V      +   L     Q    
Sbjct: 183 IVGGACTDVEQTFLEVDRVQKREYLCDILNTSGTNRVLVFVGQKRNADFLASYLSQSGYP 242

Query: 92  -------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  R   +    ++++  GK P+L A       GL++    + +V + L  D++E+
Sbjct: 243 TTTIHGDRLQREREEALRDFKSGKSPVLIA-TNVAARGLDIPDVTH-VVNYDLPMDIDEY 300

Query: 145 QQMIERIGVTR 155
              I R G   
Sbjct: 301 VHRIGRTGRCG 311


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           K  + +  + +   I+  N A+      QL  G              D K +    +I  
Sbjct: 197 KMSKNILVEPKMVEIDEKNKAA--DDVEQLVYG-----------VDADRKRELTSFLIGS 243

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAH 115
            N   ++V          L K   +                    + E+ EGK+      
Sbjct: 244 RNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVR-ALIA 302

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGFKRAVFVYYLIAQN 174
                 G+++  G + ++ + L ++ E++   + RIG T R   +G   +     L++  
Sbjct: 303 TDVAARGIDI-KGLSHVINYELPYNAEDY---VHRIGRTARAGNSGLAVS-----LVSPG 353

Query: 175 TIDELVLQRLRTKSTIQ 191
             +E +L  +     IQ
Sbjct: 354 --EEWLLTAIEELLDIQ 368


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL- 94
           AN A +  E+       D K + L  ++ K +   ++V         +L +A  + +   
Sbjct: 212 ANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQVLVFTRTKHGANKLSEALVKDKITS 271

Query: 95  ---------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                          + ++  GK+ +L A       G++++   + +V F L    E++ 
Sbjct: 272 AAIHGNKSQGARTKALDDFKNGKVRVLVA-TDIAARGIDIEQLPH-VVNFELPNVAEDY- 328

Query: 146 QMIERIGVTRQRQAGFK 162
             + RIG  R  +AG  
Sbjct: 329 --VHRIG--RTGRAGNN 341


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
           E K +  + D+K+  L  ++ +      +V         R+ K   +           R+
Sbjct: 284 ELKVFTVMQDQKLGLLNQMLNEHEGT-FLVFSRTKHGADRISKKLEKLGHVADVIHGDRS 342

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++ ++ G+  +L A       G++++   + +V + L    E+    + RIG 
Sbjct: 343 QSQRTSALKGFSTGRHRILVA-TDVAARGIDVRDIAH-VVNYDLPGTTEDF---VHRIG- 396

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R  +AG K     + +  + +    + + L+ K
Sbjct: 397 -RTGRAGKKGVATTFVMPQERSDARKMERELKIK 429


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 13/157 (8%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +D K+  L+ +IE+      I+  +       +       +             K    +
Sbjct: 240 NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E+ +G + +L A       GL++    + +  F L  + E++   I R G         
Sbjct: 300 EEFTQGNVDILVA-TDVAARGLHIPQVTH-VFNFDLPNEAEDYVHRIGRTGRAGASGNSI 357

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             A   Y  I    I+E +   +         LL  L
Sbjct: 358 SFACEEY-AINLPAIEEYIEHSIPQSDYDASALLEDL 393


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 13/157 (8%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTI 101
           +D K+  L+ +IE+      I+  +       +       +             K    +
Sbjct: 240 NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERIL 299

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E+ +G + +L A       GL++    + +  F L  + E++   I R G         
Sbjct: 300 EEFTQGNVDILVA-TDVAARGLHIPQVTH-VFNFDLPNEAEDYVHRIGRTGRAGASGNSI 357

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             A   Y  I    I+E +   +         LL  L
Sbjct: 358 SFACEEY-AINLPAIEEYIEHSIPQSDYDASALLEDL 393


>gi|89147697|gb|ABD62707.1| vasa protein [Acanthopagrus schlegelii]
          Length = 260

 Score = 38.4 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 38  GAVYYDEEKHWKEVHD-EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
           GA   D E+ + +V    K + L  +++       +V          +     Q      
Sbjct: 133 GAACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTT 192

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   +    + ++  GK P++ A  +    GL++    + +V F L  +++E+  
Sbjct: 193 SIHGDREQREREQALADFRSGKCPVMVA-TSVAARGLDIPDVQH-VVNFDLPKEIDEYVH 250

Query: 147 MIERIGVTR 155
            I R G   
Sbjct: 251 RIGRTGRCG 259


>gi|297746282|emb|CBI16338.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score = 38.4 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 28/165 (16%)

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNS--------------DLARLQ------KAFPQG 91
               K++ L+ +I +     + V   F S              D  R +      +    G
Sbjct: 977  ASGKLQLLDRMISEIKNRGLRVLILFQSIGGSGRDSIGDILDDFLRQRFGQDSYERVDGG 1036

Query: 92   RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +    + ++N  +    +      +C   + L    + ++ F   W+     + + 
Sbjct: 1037 GVPSRKQAALNKFNNKESGRFVFLLEIRACLSSIKL-SSVDTIIIFDSDWNPVNDLRALN 1095

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +I +           + ++ L +  T++E  L   +    +   L
Sbjct: 1096 KITIDS-----QFEKIKLFRLYSPFTVEEKSLILAKHDMALDSNL 1135


>gi|227539388|ref|ZP_03969437.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240701|gb|EEI90716.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1748

 Score = 38.4 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 23/180 (12%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            A N A    +   Q     V+ D        W    + K K +E      +  P      
Sbjct: 1357 AVNIAKYYNQFNAQKGTQFVFSDLGTYKPGEWNVYSEIKRKLVED-----HGIPA----- 1406

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               ++  +Q+     +   +    I   NEGKI +LF   +  G G+N Q     +    
Sbjct: 1407 --HEVRFIQE----AKNDKQRKELINGMNEGKIRVLFGSTSMLGTGVNAQKRAVAVHHLD 1460

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGF--KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              W   +  Q   R        A F     V V     + ++D      L  K    D L
Sbjct: 1461 TPWRPSDLAQRDGRAIRKGNEIAKFFADNKVAVIIYAVEKSLDSYKFNLLYNKQLFIDQL 1520


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score = 38.4 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +++    +   +E  N+ +      Q     +Y  ++       + K + L  +I + 
Sbjct: 196 LAKDILRKPKRIEVERANTTA------QTVAHVLYPVDQ-------ERKTELLSELIGRK 242

Query: 67  NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           N   ++V  ++      + K               R        ++E+  GK  ++ A  
Sbjct: 243 NWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVA-T 301

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                GL+++   + +V + + +  E++   + RIG T  R      AV 
Sbjct: 302 DVAARGLDIEDLPH-VVNYDMPFLAEDY---VHRIGRTG-RAGKQGHAVS 346


>gi|223042060|ref|ZP_03612236.1| ATP-dependent helicase HepA [Actinobacillus minor 202]
 gi|223017135|gb|EEF15571.1| ATP-dependent helicase HepA [Actinobacillus minor 202]
          Length = 969

 Score = 38.4 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ALE I+ +  A    V +   S + R           DK      +  EG    +    +
Sbjct: 520 ALEQILREKEAIRAAVFHERMSIVER-----------DKASAYFAQQEEGAQ--VLISSS 566

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
               G N Q+  + LV F+L    +  +Q I R+      + G K  + +Y
Sbjct: 567 IGSEGRNFQFASD-LVLFNLPDHPDVLEQSIGRLD-----RIGQKNDIKIY 611


>gi|229495719|ref|ZP_04389447.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
            35406]
 gi|229317293|gb|EEN83198.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
            35406]
          Length = 1828

 Score = 38.4 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +   + +T       I   NEG I +LF   +  G G+N Q     +      W   + +
Sbjct: 1379 RFIQEAKTDKARKTLIAGMNEGSIRVLFGSTSMLGTGVNAQKRAVAIHHLDTPWRPSDLE 1438

Query: 146  QMIERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R         +  A  K  V +Y    + ++D      L  K    + L
Sbjct: 1439 QRDGRAVRKGNEVAKFHADNKVDVIIY--AVEKSLDSYKFNLLHNKQLFIEQL 1489


>gi|302544484|ref|ZP_07296826.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462102|gb|EFL25195.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 565

 Score = 38.4 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----Q 90
           LA      +E+  +      K +  E ++ K      +V   +   L  L +       +
Sbjct: 375 LAYATAETEEKYRYCATTASKQRITEALVAKHKGQQTLVIGQYIDQLDELGEHLDAPVIK 434

Query: 91  GRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G T + +       + +G++ +L          ++L      +     +   +E  Q + 
Sbjct: 435 GETTNAQREKLFDAFRQGELSVLVVS-KVANFSIDLPEATVAIQVSGTFGSRQEEAQRLG 493

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           R+   +            Y ++A++TID+ 
Sbjct: 494 RVLRPKA----DGHPAVFYSVVARDTIDQD 519


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score = 38.4 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 29/168 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +F  ++    +   ++  NS + T          VY  EE+        K + L  +I 
Sbjct: 193 KQFASKVLKQPEIVRVDQTNSTAST------VQHVVYPVEER-------RKQELLSELIG 239

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114
           K N   ++V  +       L K               ++       ++E+ EGK+ +L A
Sbjct: 240 KKNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQAGF 161
                  G+++  G   ++   L W  E++   + RIG T R    G 
Sbjct: 300 -TEVAARGIDI-DGLPRVINIDLPWLAEDY---VHRIGRTGRAGNQGQ 342


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score = 38.4 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 24/129 (18%)

Query: 48  WKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFP----------QG 91
           W E HD K   L  +++ +N       +  +V          L++               
Sbjct: 407 WVEEHD-KRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGD 465

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           RT  +    ++ +  GK P+L A  A    GL++ +  + ++ F L  D+EE+   + RI
Sbjct: 466 RTQREREDALRRFRAGKAPILVA-TAVAARGLDIPHVKH-VINFDLPGDVEEY---VHRI 520

Query: 152 GVTRQRQAG 160
           G  R  + G
Sbjct: 521 G--RTGRMG 527


>gi|82793376|ref|XP_728014.1| ATP-dependent DNA helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484151|gb|EAA19579.1| ATP-dependent DNA helicase-related [Plasmodium yoelii yoelii]
          Length = 629

 Score = 38.4 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 55  KIKALEVII----EKANAAPIIVAYHFNS-DLARLQKAFPQ----------GRTLDKDPC 99
           KI   E I     EK N     + Y F       + K   +          G T +    
Sbjct: 274 KIDKKESICDIVREKRNEGKTGIIYCFKRKTCDMISKYLRENGIQSLSYHAGLTNNARKQ 333

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             ++W  G I +L A  A  G G++ +   + ++ F+L   +E + Q   R G   
Sbjct: 334 IQEKWINGTIKILVATIA-FGMGIDRKD-VSYIIHFNLPKSIENYYQESGRAGRNG 387


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score = 38.4 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKD--- 97
           +++ + +H  K+ A+  ++E  N   IIV      +   +         Q   ++ D   
Sbjct: 326 QRYMQVMHSHKLDAMTRVLEVENYDGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQ 385

Query: 98  ---PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                T+    +G+I +L A       GL+++   +++V + +  D E +   + RIG  
Sbjct: 386 QLRERTVDALRDGRIDILVA-TDVAARGLDVER-ISLVVNYDIPHDTESY---VHRIG-- 438

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           R  +AG      ++      T  E  + R   K+T Q 
Sbjct: 439 RTGRAGRDGEAILFV-----TPREKYMLRQIEKATRQK 471


>gi|68069317|ref|XP_676569.1| iswi protein [Plasmodium berghei strain ANKA]
 gi|56496328|emb|CAI04933.1| iswi protein homologue, putative [Plasmodium berghei]
          Length = 1164

 Score = 38.4 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 65   KANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPC-----TIQEWNEGK--IPLL 112
            +A    +++   F   L  L+     + +   R             I+E+N       + 
Sbjct: 1087 EAKMHKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIY 1146

Query: 113  FAHPASCGHGLNLQYGGN 130
                 + G G+NL    +
Sbjct: 1147 LISTRAGGLGINLTAANH 1164


>gi|227486086|ref|ZP_03916402.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235933|gb|EEI85948.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 252

 Score = 38.4 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G N Q     +    + W   +  Q   RI     RQ    + V ++  + +NT D  
Sbjct: 2   GAGTNAQDKLIAIHDLDIPWRPADLSQRAGRIV----RQGNENKEVHIFRYVTENTFDAY 57

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + Q L  K      ++ +
Sbjct: 58  LFQTLENKQKYISQIMTS 75


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.146    0.408 

Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,876,399
Number of Sequences: 13984884
Number of extensions: 165958579
Number of successful extensions: 494435
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 8502
Number of HSP's successfully gapped in prelim test: 4595
Number of HSP's that attempted gapping in prelim test: 466056
Number of HSP's gapped (non-prelim): 14093
length of query: 205
length of database: 4,792,584,752
effective HSP length: 132
effective length of query: 73
effective length of database: 2,946,580,064
effective search space: 215100344672
effective search space used: 215100344672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 78 (34.5 bits)